Query 027740
Match_columns 219
No_of_seqs 133 out of 1085
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 14:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03033 2-dehydro-3-deoxyphos 100.0 4E-64 8.8E-69 443.0 22.3 219 1-219 72-290 (290)
2 TIGR01362 KDO8P_synth 3-deoxy- 100.0 1.8E-59 3.8E-64 409.5 22.0 200 1-205 58-257 (258)
3 PRK05198 2-dehydro-3-deoxyphos 100.0 3.7E-59 8E-64 408.6 21.6 198 1-203 66-263 (264)
4 PRK12457 2-dehydro-3-deoxyphos 100.0 2.3E-58 5.1E-63 406.2 22.7 201 1-206 72-274 (281)
5 PRK08673 3-deoxy-7-phosphohept 100.0 5.9E-57 1.3E-61 409.5 21.9 189 2-206 143-334 (335)
6 TIGR01361 DAHP_synth_Bsub phos 100.0 6.7E-57 1.4E-61 397.1 21.2 182 2-199 75-259 (260)
7 PRK13396 3-deoxy-7-phosphohept 100.0 7.6E-57 1.6E-61 410.4 22.0 191 2-208 151-345 (352)
8 PRK13398 3-deoxy-7-phosphohept 100.0 6.2E-56 1.3E-60 392.1 20.5 187 2-204 77-266 (266)
9 PRK13397 3-deoxy-7-phosphohept 100.0 3E-55 6.6E-60 383.9 20.5 182 2-199 65-249 (250)
10 PRK12595 bifunctional 3-deoxy- 100.0 2.9E-54 6.4E-59 395.5 22.1 188 2-205 168-358 (360)
11 TIGR03569 NeuB_NnaB N-acetylne 100.0 5.3E-54 1.1E-58 389.6 21.5 183 2-209 75-263 (329)
12 TIGR03586 PseI pseudaminic aci 100.0 2E-53 4.3E-58 385.5 20.8 180 5-209 79-262 (327)
13 PF03102 NeuB: NeuB family; I 100.0 1.6E-53 3.4E-58 372.1 17.1 181 4-209 57-241 (241)
14 COG2876 AroA 3-deoxy-D-arabino 100.0 2.1E-52 4.5E-57 365.0 19.2 188 2-205 95-285 (286)
15 COG2877 KdsA 3-deoxy-D-manno-o 100.0 1.2E-50 2.6E-55 349.1 18.6 205 1-210 73-277 (279)
16 COG2089 SpsE Sialic acid synth 100.0 4.3E-50 9.3E-55 359.0 17.5 181 5-210 92-276 (347)
17 PF00793 DAHP_synth_1: DAHP sy 100.0 2.7E-41 5.8E-46 299.4 11.8 192 2-204 74-269 (270)
18 PRK09261 phospho-2-dehydro-3-d 100.0 1.1E-29 2.4E-34 231.0 13.2 165 1-187 119-315 (349)
19 TIGR00034 aroFGH phospho-2-deh 99.9 4.3E-26 9.4E-31 207.1 18.0 179 2-198 115-337 (344)
20 PRK12755 phospho-2-dehydro-3-d 99.9 1.7E-26 3.7E-31 210.2 13.5 162 2-174 121-309 (353)
21 PRK12822 phospho-2-dehydro-3-d 99.9 1.6E-21 3.5E-26 177.2 11.6 165 1-177 119-310 (356)
22 PRK12756 phospho-2-dehydro-3-d 99.8 3E-19 6.5E-24 162.2 11.5 164 2-177 119-309 (348)
23 COG0722 AroG 3-deoxy-D-arabino 99.5 4.2E-14 9.1E-19 127.2 8.3 162 2-175 120-309 (351)
24 cd04732 HisA HisA. Phosphorib 97.6 0.0025 5.4E-08 54.5 14.1 144 5-172 62-222 (234)
25 TIGR00007 phosphoribosylformim 97.1 0.023 5E-07 48.6 14.1 143 5-171 61-220 (230)
26 PRK13585 1-(5-phosphoribosyl)- 97.1 0.026 5.7E-07 48.6 14.2 144 5-172 65-225 (241)
27 PRK14024 phosphoribosyl isomer 97.0 0.021 4.6E-07 49.7 13.5 118 5-124 64-196 (241)
28 TIGR03572 WbuZ glycosyl amidat 97.0 0.023 5E-07 48.8 13.5 143 5-170 63-228 (232)
29 PF01408 GFO_IDH_MocA: Oxidore 96.9 0.0079 1.7E-07 45.6 8.8 77 6-88 37-115 (120)
30 cd04740 DHOD_1B_like Dihydroor 96.9 0.12 2.5E-06 46.0 17.2 167 4-205 77-285 (296)
31 PRK00748 1-(5-phosphoribosyl)- 96.9 0.045 9.7E-07 46.7 13.9 139 5-170 63-221 (233)
32 PRK11320 prpB 2-methylisocitra 96.8 0.018 3.9E-07 52.1 11.5 139 6-205 7-147 (292)
33 PRK09140 2-dehydro-3-deoxy-6-p 96.7 0.076 1.7E-06 45.5 14.2 148 3-199 47-201 (206)
34 cd04731 HisF The cyclase subun 96.7 0.074 1.6E-06 45.9 14.2 118 5-124 60-199 (243)
35 cd04729 NanE N-acetylmannosami 96.6 0.099 2.1E-06 44.6 14.0 138 5-171 49-208 (219)
36 PRK11613 folP dihydropteroate 96.5 0.17 3.7E-06 45.6 15.7 166 5-201 79-273 (282)
37 PRK01033 imidazole glycerol ph 96.5 0.098 2.1E-06 46.1 13.8 147 5-175 63-234 (258)
38 PRK02083 imidazole glycerol ph 96.5 0.099 2.2E-06 45.6 13.6 158 5-195 63-245 (253)
39 TIGR00735 hisF imidazoleglycer 96.4 0.1 2.2E-06 45.8 13.4 159 5-195 63-247 (254)
40 cd02810 DHOD_DHPD_FMN Dihydroo 96.4 0.12 2.7E-06 45.6 13.8 142 5-168 86-271 (289)
41 PRK00043 thiE thiamine-phospha 96.4 0.29 6.3E-06 40.8 15.4 132 4-173 53-192 (212)
42 PRK07259 dihydroorotate dehydr 96.3 0.25 5.5E-06 44.1 15.4 166 5-205 80-288 (301)
43 cd00452 KDPG_aldolase KDPG and 96.2 0.26 5.5E-06 41.3 14.3 129 4-173 42-175 (190)
44 PRK10550 tRNA-dihydrouridine s 96.2 0.066 1.4E-06 48.7 11.4 111 42-175 109-230 (312)
45 TIGR02317 prpB methylisocitrat 96.2 0.064 1.4E-06 48.4 11.1 137 7-205 4-142 (285)
46 TIGR00736 nifR3_rel_arch TIM-b 96.2 0.081 1.7E-06 46.4 11.4 104 41-170 112-221 (231)
47 TIGR01037 pyrD_sub1_fam dihydr 96.2 0.38 8.2E-06 42.9 16.0 167 4-205 78-288 (300)
48 TIGR03151 enACPred_II putative 96.1 0.092 2E-06 47.6 11.8 124 16-171 66-192 (307)
49 cd02940 DHPD_FMN Dihydropyrimi 96.1 0.26 5.5E-06 44.3 14.5 139 8-170 90-282 (299)
50 PRK01130 N-acetylmannosamine-6 96.1 0.33 7.1E-06 41.4 14.6 137 5-171 45-204 (221)
51 COG0673 MviM Predicted dehydro 96.1 0.041 8.9E-07 49.0 9.3 75 6-85 41-117 (342)
52 cd04726 KGPDC_HPS 3-Keto-L-gul 96.0 0.61 1.3E-05 38.7 15.5 142 3-174 39-191 (202)
53 PRK07565 dihydroorotate dehydr 95.9 0.41 9E-06 43.6 15.2 165 5-203 90-292 (334)
54 cd02911 arch_FMN Archeal FMN-b 95.9 0.091 2E-06 45.8 10.3 100 42-170 118-221 (233)
55 cd00564 TMP_TenI Thiamine mono 95.9 0.64 1.4E-05 37.7 14.7 130 5-172 45-181 (196)
56 cd04730 NPD_like 2-Nitropropan 95.9 0.96 2.1E-05 38.4 17.7 154 6-197 43-207 (236)
57 TIGR02319 CPEP_Pphonmut carbox 95.8 0.28 6.1E-06 44.5 13.5 71 117-206 76-147 (294)
58 PF01207 Dus: Dihydrouridine s 95.7 0.049 1.1E-06 49.3 8.2 110 40-172 98-216 (309)
59 cd00377 ICL_PEPM Members of th 95.7 0.14 3E-06 44.9 10.8 134 11-203 4-139 (243)
60 PRK13587 1-(5-phosphoribosyl)- 95.6 0.41 8.9E-06 41.7 13.0 142 5-170 65-222 (234)
61 PRK10415 tRNA-dihydrouridine s 95.5 0.2 4.3E-06 45.7 11.4 107 42-172 111-227 (321)
62 KOG2335 tRNA-dihydrouridine sy 95.4 0.22 4.8E-06 46.3 11.2 111 39-170 116-234 (358)
63 cd07944 DRE_TIM_HOA_like 4-hyd 95.4 0.25 5.5E-06 43.8 11.3 135 15-173 72-217 (266)
64 cd03174 DRE_TIM_metallolyase D 95.3 0.48 1E-05 40.8 12.7 143 7-173 56-224 (265)
65 cd04722 TIM_phosphate_binding 95.3 0.84 1.8E-05 36.3 13.3 134 7-168 48-198 (200)
66 COG0352 ThiE Thiamine monophos 95.3 0.83 1.8E-05 39.6 13.8 131 5-173 54-190 (211)
67 cd04736 MDH_FMN Mandelate dehy 95.2 0.25 5.5E-06 46.1 11.2 128 49-207 225-354 (361)
68 COG0042 tRNA-dihydrouridine sy 95.2 0.16 3.5E-06 46.4 9.7 108 40-170 111-229 (323)
69 TIGR02708 L_lactate_ox L-lacta 95.2 0.26 5.6E-06 46.1 11.2 128 50-208 218-349 (367)
70 TIGR00737 nifR3_yhdG putative 95.2 0.31 6.6E-06 44.1 11.4 108 42-173 109-226 (319)
71 PRK06552 keto-hydroxyglutarate 95.2 1.9 4.1E-05 37.2 16.5 129 4-173 51-187 (213)
72 TIGR02321 Pphn_pyruv_hyd phosp 95.2 0.84 1.8E-05 41.3 14.1 136 7-204 6-145 (290)
73 TIGR02320 PEP_mutase phosphoen 95.1 0.37 8E-06 43.5 11.7 162 8-198 1-206 (285)
74 TIGR01304 IMP_DH_rel_2 IMP deh 95.0 0.58 1.2E-05 43.8 13.0 113 30-170 149-285 (369)
75 PRK01130 N-acetylmannosamine-6 95.0 0.16 3.5E-06 43.3 8.5 75 5-80 107-193 (221)
76 TIGR00742 yjbN tRNA dihydrouri 94.9 0.4 8.8E-06 43.8 11.4 108 42-173 101-227 (318)
77 cd04723 HisA_HisF Phosphoribos 94.8 1.2 2.5E-05 38.7 13.6 138 5-171 67-220 (233)
78 cd07939 DRE_TIM_NifV Streptomy 94.8 0.61 1.3E-05 40.9 11.9 134 15-172 60-215 (259)
79 cd04738 DHOD_2_like Dihydrooro 94.8 0.67 1.5E-05 42.2 12.5 64 60-123 203-285 (327)
80 KOG2741 Dimeric dihydrodiol de 94.8 0.16 3.4E-06 47.2 8.3 85 5-95 43-129 (351)
81 PRK14041 oxaloacetate decarbox 94.7 1.2 2.6E-05 43.0 14.5 152 29-204 101-276 (467)
82 TIGR01182 eda Entner-Doudoroff 94.7 2.6 5.5E-05 36.3 16.0 135 4-179 46-186 (204)
83 cd02809 alpha_hydroxyacid_oxid 94.7 1.7 3.6E-05 39.0 14.6 128 49-207 161-292 (299)
84 cd07943 DRE_TIM_HOA 4-hydroxy- 94.6 0.33 7.1E-06 42.7 9.8 127 23-173 85-219 (263)
85 TIGR03217 4OH_2_O_val_ald 4-hy 94.6 0.46 1E-05 43.7 11.0 123 25-172 89-221 (333)
86 cd00958 DhnA Class I fructose- 94.6 0.44 9.5E-06 40.8 10.3 85 4-90 110-211 (235)
87 cd04739 DHOD_like Dihydroorota 94.5 2.2 4.7E-05 38.9 15.2 89 5-96 88-198 (325)
88 cd04737 LOX_like_FMN L-Lactate 94.5 0.54 1.2E-05 43.7 11.3 130 49-209 210-343 (351)
89 PRK09427 bifunctional indole-3 94.4 1.4 3.1E-05 42.3 14.2 149 3-197 146-305 (454)
90 cd03332 LMO_FMN L-Lactate 2-mo 94.3 0.57 1.2E-05 44.1 11.0 129 49-208 242-374 (383)
91 PRK14042 pyruvate carboxylase 94.2 4.6 0.0001 40.2 17.8 145 36-204 110-277 (596)
92 PRK09875 putative hydrolase; P 94.2 0.69 1.5E-05 41.8 11.1 110 5-124 63-209 (292)
93 cd02801 DUS_like_FMN Dihydrour 94.2 0.55 1.2E-05 39.7 10.0 135 13-171 51-215 (231)
94 PRK04165 acetyl-CoA decarbonyl 94.2 0.56 1.2E-05 45.0 11.0 150 6-179 145-306 (450)
95 cd06557 KPHMT-like Ketopantoat 94.2 0.42 9E-06 42.5 9.5 149 6-171 2-180 (254)
96 TIGR00284 dihydropteroate synt 94.2 3.5 7.5E-05 40.2 16.5 183 8-214 200-388 (499)
97 PF00977 His_biosynth: Histidi 94.2 0.18 3.8E-06 43.7 7.0 141 5-169 62-220 (229)
98 cd03174 DRE_TIM_metallolyase D 94.1 0.96 2.1E-05 38.9 11.5 142 29-200 25-187 (265)
99 cd07937 DRE_TIM_PC_TC_5S Pyruv 94.0 2.4 5.2E-05 37.7 14.1 153 26-203 94-271 (275)
100 PRK02615 thiamine-phosphate py 94.0 1.8 3.9E-05 40.2 13.6 134 5-173 190-326 (347)
101 PRK05286 dihydroorotate dehydr 93.9 0.93 2E-05 41.6 11.6 119 50-201 196-340 (344)
102 PRK00311 panB 3-methyl-2-oxobu 93.8 1.4 3.1E-05 39.3 12.2 150 5-171 4-183 (264)
103 PRK06512 thiamine-phosphate py 93.8 2.6 5.6E-05 36.5 13.5 135 5-173 60-196 (221)
104 PRK07535 methyltetrahydrofolat 93.7 4.7 0.0001 35.8 15.4 167 8-207 61-248 (261)
105 TIGR01919 hisA-trpF 1-(5-phosp 93.7 2.6 5.5E-05 37.0 13.5 117 5-123 63-198 (243)
106 cd00381 IMPDH IMPDH: The catal 93.7 1.2 2.6E-05 40.7 11.9 114 27-168 97-225 (325)
107 PRK04302 triosephosphate isome 93.7 2.5 5.4E-05 36.2 13.1 150 5-197 45-218 (223)
108 PRK00278 trpC indole-3-glycero 93.6 0.44 9.6E-06 42.2 8.5 84 3-91 147-238 (260)
109 PRK09282 pyruvate carboxylase 93.5 1.6 3.5E-05 43.2 13.1 152 29-204 102-277 (592)
110 cd00331 IGPS Indole-3-glycerol 93.5 0.71 1.5E-05 39.1 9.3 85 4-93 109-201 (217)
111 TIGR01768 GGGP-family geranylg 93.4 2.9 6.4E-05 36.5 13.2 137 5-171 44-210 (223)
112 PF13714 PEP_mutase: Phosphoen 93.3 1.7 3.6E-05 38.3 11.6 67 117-206 68-135 (238)
113 PRK00915 2-isopropylmalate syn 93.3 2.9 6.2E-05 40.6 14.3 144 31-199 34-189 (513)
114 PRK08649 inosine 5-monophospha 93.3 1.7 3.7E-05 40.6 12.3 118 27-173 145-289 (368)
115 TIGR03128 RuMP_HxlA 3-hexulose 93.2 3.6 7.8E-05 34.3 13.2 140 3-172 38-189 (206)
116 cd04739 DHOD_like Dihydroorota 93.1 1.8 3.8E-05 39.5 12.0 92 57-170 97-196 (325)
117 PF00682 HMGL-like: HMGL-like 93.1 0.85 1.8E-05 39.0 9.4 98 50-171 112-213 (237)
118 PRK08195 4-hyroxy-2-oxovalerat 93.1 0.73 1.6E-05 42.4 9.4 124 25-173 90-223 (337)
119 TIGR00734 hisAF_rel hisA/hisF 93.0 3.2 7E-05 35.8 12.8 136 5-170 68-214 (221)
120 PRK08999 hypothetical protein; 93.0 3.4 7.4E-05 36.8 13.4 128 4-168 176-307 (312)
121 COG0134 TrpC Indole-3-glycerol 92.9 0.49 1.1E-05 42.2 7.7 83 3-90 143-233 (254)
122 PLN03228 methylthioalkylmalate 92.9 1.5 3.2E-05 42.7 11.6 144 30-199 113-279 (503)
123 cd07940 DRE_TIM_IPMS 2-isoprop 92.8 1.2 2.5E-05 39.3 9.9 101 50-174 118-224 (268)
124 TIGR01769 GGGP geranylgeranylg 92.8 5.1 0.00011 34.5 13.6 132 8-168 45-204 (205)
125 TIGR01108 oadA oxaloacetate de 92.7 2.5 5.5E-05 41.8 13.1 151 30-204 98-272 (582)
126 cd04740 DHOD_1B_like Dihydroor 92.7 0.74 1.6E-05 40.9 8.7 89 58-168 88-185 (296)
127 cd04729 NanE N-acetylmannosami 92.7 0.75 1.6E-05 39.2 8.4 75 5-80 111-197 (219)
128 PRK12331 oxaloacetate decarbox 92.6 7.5 0.00016 37.3 15.9 151 30-204 103-277 (448)
129 PRK00278 trpC indole-3-glycero 92.5 4.6 0.0001 35.7 13.4 137 4-173 99-244 (260)
130 PRK14040 oxaloacetate decarbox 92.5 12 0.00026 37.2 18.1 153 29-205 103-279 (593)
131 PF02581 TMP-TENI: Thiamine mo 92.4 5.1 0.00011 33.0 12.9 107 3-123 43-154 (180)
132 cd06556 ICL_KPHMT Members of t 92.4 0.72 1.6E-05 40.6 8.0 155 8-203 4-168 (240)
133 PRK09875 putative hydrolase; P 92.3 4.4 9.6E-05 36.6 13.2 80 46-128 60-159 (292)
134 cd00423 Pterin_binding Pterin 92.3 5.5 0.00012 35.0 13.6 115 7-123 67-204 (258)
135 cd00405 PRAI Phosphoribosylant 92.1 4.3 9.3E-05 34.0 12.2 156 5-196 40-202 (203)
136 TIGR00693 thiE thiamine-phosph 92.1 6 0.00013 32.6 14.0 132 4-173 45-184 (196)
137 PTZ00314 inosine-5'-monophosph 92.0 0.73 1.6E-05 44.6 8.3 118 24-173 241-377 (495)
138 PF00113 Enolase_C: Enolase, C 91.9 0.6 1.3E-05 42.4 7.1 92 5-97 139-238 (295)
139 PRK12581 oxaloacetate decarbox 91.9 4.4 9.6E-05 39.2 13.3 177 4-204 74-286 (468)
140 PRK06801 hypothetical protein; 91.9 3.1 6.6E-05 37.6 11.6 108 36-205 15-128 (286)
141 PRK07259 dihydroorotate dehydr 91.8 1 2.2E-05 40.2 8.5 91 57-168 89-188 (301)
142 PRK14114 1-(5-phosphoribosyl)- 91.7 5.1 0.00011 35.2 12.6 113 5-123 63-193 (241)
143 COG0399 WecE Predicted pyridox 91.6 2.6 5.7E-05 39.6 11.2 154 10-199 42-210 (374)
144 COG5016 Pyruvate/oxaloacetate 91.5 9.6 0.00021 36.5 14.7 136 44-204 122-279 (472)
145 PRK07565 dihydroorotate dehydr 91.5 1.4 3E-05 40.2 9.1 91 57-168 99-196 (334)
146 PRK13957 indole-3-glycerol-pho 91.4 0.65 1.4E-05 41.2 6.7 76 4-80 139-222 (247)
147 PLN02274 inosine-5'-monophosph 91.4 2 4.4E-05 41.7 10.7 126 21-174 245-385 (505)
148 cd02922 FCB2_FMN Flavocytochro 91.4 10 0.00022 35.1 14.9 129 48-207 201-336 (344)
149 PLN02495 oxidoreductase, actin 91.4 1 2.3E-05 42.3 8.4 87 59-169 113-214 (385)
150 PRK08318 dihydropyrimidine deh 91.2 13 0.00028 34.9 16.4 142 6-171 88-284 (420)
151 PLN02826 dihydroorotate dehydr 91.2 4.5 9.8E-05 38.4 12.5 115 58-205 261-396 (409)
152 TIGR01496 DHPS dihydropteroate 91.2 6 0.00013 35.0 12.6 117 5-123 63-201 (257)
153 cd07939 DRE_TIM_NifV Streptomy 91.2 4.1 8.9E-05 35.6 11.5 141 30-200 27-180 (259)
154 cd02812 PcrB_like PcrB_like pr 91.1 4.9 0.00011 35.0 11.8 134 5-172 45-207 (219)
155 PLN02321 2-isopropylmalate syn 91.1 3.7 7.9E-05 41.2 12.3 143 31-199 116-280 (632)
156 PRK13399 fructose-1,6-bisphosp 91.1 4 8.6E-05 38.0 11.8 115 36-205 15-136 (347)
157 PLN02493 probable peroxisomal 91.1 8.7 0.00019 36.0 14.1 30 49-78 90-119 (367)
158 PRK05437 isopentenyl pyrophosp 91.0 9.6 0.00021 35.2 14.2 126 50-207 176-326 (352)
159 PLN02746 hydroxymethylglutaryl 90.8 3.3 7.1E-05 38.5 10.9 133 16-173 114-275 (347)
160 KOG0538 Glycolate oxidase [Ene 90.8 3.9 8.5E-05 37.8 11.1 31 49-79 88-118 (363)
161 TIGR01521 FruBisAldo_II_B fruc 90.8 4.2 9.1E-05 37.9 11.6 115 36-205 13-134 (347)
162 PRK07028 bifunctional hexulose 90.7 7 0.00015 36.8 13.3 140 3-173 43-194 (430)
163 PRK11815 tRNA-dihydrouridine s 90.7 3.6 7.7E-05 37.7 11.1 108 42-173 111-237 (333)
164 PF00218 IGPS: Indole-3-glycer 90.7 0.76 1.6E-05 40.9 6.4 82 4-91 146-236 (254)
165 PTZ00081 enolase; Provisional 90.7 2.2 4.7E-05 40.9 9.9 91 5-96 287-385 (439)
166 TIGR02090 LEU1_arch isopropylm 90.6 2.7 5.8E-05 39.0 10.2 126 25-174 73-219 (363)
167 PRK07455 keto-hydroxyglutarate 90.6 9.3 0.0002 32.1 14.4 128 4-171 50-182 (187)
168 PRK11858 aksA trans-homoaconit 90.6 2.8 6.1E-05 39.0 10.4 136 15-174 64-223 (378)
169 cd00331 IGPS Indole-3-glycerol 90.6 9.6 0.00021 32.2 14.1 137 4-173 60-205 (217)
170 cd00945 Aldolase_Class_I Class 90.5 7.9 0.00017 31.2 13.4 93 49-168 100-200 (201)
171 cd02809 alpha_hydroxyacid_oxid 90.5 12 0.00027 33.4 14.8 87 60-172 116-203 (299)
172 CHL00200 trpA tryptophan synth 90.4 12 0.00027 33.3 13.9 162 3-198 78-258 (263)
173 PRK08227 autoinducer 2 aldolas 90.3 2.7 5.9E-05 37.6 9.6 82 4-90 128-223 (264)
174 PRK12290 thiE thiamine-phospha 90.3 7.8 0.00017 37.2 13.2 131 5-173 250-396 (437)
175 PRK08185 hypothetical protein; 90.2 5.2 0.00011 36.2 11.4 108 36-205 10-122 (283)
176 cd00739 DHPS DHPS subgroup of 90.2 13 0.00028 32.9 14.5 148 8-171 68-244 (257)
177 PRK06843 inosine 5-monophospha 90.2 1.6 3.5E-05 41.4 8.5 119 26-174 155-290 (404)
178 PRK05692 hydroxymethylglutaryl 90.1 5.2 0.00011 35.9 11.4 98 51-173 125-233 (287)
179 COG1830 FbaB DhnA-type fructos 90.1 2.4 5.1E-05 38.1 9.0 84 4-88 131-232 (265)
180 cd04737 LOX_like_FMN L-Lactate 89.9 13 0.00028 34.6 14.1 101 49-172 92-252 (351)
181 PRK10206 putative oxidoreducta 89.8 0.96 2.1E-05 41.3 6.5 60 28-87 55-116 (344)
182 cd07940 DRE_TIM_IPMS 2-isoprop 89.8 8.6 0.00019 33.8 12.4 146 30-200 27-184 (268)
183 PRK09196 fructose-1,6-bisphosp 89.8 6.1 0.00013 36.8 11.8 115 36-205 15-136 (347)
184 TIGR01305 GMP_reduct_1 guanosi 89.6 3.9 8.4E-05 38.0 10.3 118 22-170 105-242 (343)
185 PLN02591 tryptophan synthase 89.5 8.5 0.00018 34.1 12.1 164 3-198 65-246 (250)
186 TIGR00973 leuA_bact 2-isopropy 89.3 8.7 0.00019 37.2 13.0 143 31-199 31-186 (494)
187 TIGR02660 nifV_homocitr homoci 89.3 9.1 0.0002 35.4 12.7 140 30-199 30-182 (365)
188 PRK09517 multifunctional thiam 89.3 23 0.0005 36.1 16.5 136 5-173 52-198 (755)
189 cd07941 DRE_TIM_LeuA3 Desulfob 89.2 4.3 9.3E-05 36.0 10.1 99 50-173 123-229 (273)
190 PLN00191 enolase 89.2 3.3 7.2E-05 39.8 9.9 85 3-87 299-389 (457)
191 TIGR00736 nifR3_rel_arch TIM-b 89.2 2.3 5.1E-05 37.3 8.2 91 58-168 66-167 (231)
192 PRK12858 tagatose 1,6-diphosph 89.2 2.9 6.4E-05 38.7 9.2 93 4-97 144-279 (340)
193 TIGR02708 L_lactate_ox L-lacta 89.1 11 0.00025 35.3 13.1 102 48-172 99-259 (367)
194 PLN02424 ketopantoate hydroxym 89.0 8.6 0.00019 35.6 12.1 151 5-171 24-204 (332)
195 cd03332 LMO_FMN L-Lactate 2-mo 89.0 6.2 0.00013 37.2 11.4 31 48-78 104-134 (383)
196 TIGR01060 eno phosphopyruvate 89.0 4 8.7E-05 38.7 10.2 91 4-95 267-365 (425)
197 PLN02979 glycolate oxidase 88.9 17 0.00036 34.2 14.0 31 49-79 89-119 (366)
198 PF00682 HMGL-like: HMGL-like 88.9 1.8 3.8E-05 37.0 7.2 105 71-200 65-178 (237)
199 PRK13125 trpA tryptophan synth 88.8 15 0.00033 31.9 13.6 159 6-199 64-238 (244)
200 cd04728 ThiG Thiazole synthase 88.7 2.7 5.8E-05 37.4 8.2 85 5-95 109-205 (248)
201 cd07948 DRE_TIM_HCS Saccharomy 88.7 3.6 7.9E-05 36.5 9.2 141 30-200 29-182 (262)
202 PRK00077 eno enolase; Provisio 88.7 4.5 9.8E-05 38.3 10.4 91 5-96 267-365 (425)
203 PRK07226 fructose-bisphosphate 88.7 4.3 9.4E-05 35.8 9.7 83 4-88 127-226 (267)
204 COG0134 TrpC Indole-3-glycerol 88.6 9.3 0.0002 34.1 11.6 135 5-171 96-238 (254)
205 PLN02460 indole-3-glycerol-pho 88.6 2.4 5.3E-05 39.3 8.2 87 3-94 217-318 (338)
206 TIGR01302 IMP_dehydrog inosine 88.6 2.5 5.5E-05 40.3 8.6 118 24-173 224-360 (450)
207 PRK06806 fructose-bisphosphate 88.6 9.5 0.00021 34.3 11.9 110 36-206 15-129 (281)
208 TIGR00262 trpA tryptophan synt 88.5 17 0.00037 32.1 15.0 144 2-173 72-231 (256)
209 COG0106 HisA Phosphoribosylfor 88.5 16 0.00035 32.4 13.0 142 5-171 64-223 (241)
210 PF04131 NanE: Putative N-acet 88.5 2.4 5.1E-05 36.4 7.5 83 5-92 81-172 (192)
211 TIGR02090 LEU1_arch isopropylm 88.4 7.6 0.00016 36.0 11.5 140 31-199 30-181 (363)
212 cd03313 enolase Enolase: Enola 88.3 4.6 9.9E-05 38.1 10.1 92 3-95 265-364 (408)
213 PF00218 IGPS: Indole-3-glycer 88.3 11 0.00024 33.5 12.0 135 4-171 97-240 (254)
214 PF03060 NMO: Nitronate monoox 88.1 11 0.00023 34.4 12.1 94 49-173 126-223 (330)
215 COG2513 PrpB PEP phosphonomuta 88.1 18 0.00039 33.0 13.3 71 117-206 77-148 (289)
216 PRK12330 oxaloacetate decarbox 88.1 17 0.00037 35.5 14.0 152 29-204 103-280 (499)
217 PF02879 PGM_PMM_II: Phosphogl 88.1 2 4.4E-05 32.0 6.2 67 112-200 15-82 (104)
218 cd02940 DHPD_FMN Dihydropyrimi 88.0 3.4 7.4E-05 37.0 8.7 90 59-168 99-199 (299)
219 cd02810 DHOD_DHPD_FMN Dihydroo 88.0 7.8 0.00017 34.1 10.9 95 58-173 97-198 (289)
220 TIGR01037 pyrD_sub1_fam dihydr 87.9 5.4 0.00012 35.5 9.9 91 58-168 89-188 (300)
221 TIGR00284 dihydropteroate synt 87.9 7.1 0.00015 38.0 11.3 132 8-169 74-233 (499)
222 TIGR02320 PEP_mutase phosphoen 87.8 3.7 8.1E-05 37.0 8.8 67 117-200 77-147 (285)
223 PRK11579 putative oxidoreducta 87.7 1.7 3.8E-05 39.3 6.7 59 28-86 55-115 (346)
224 cd02811 IDI-2_FMN Isopentenyl- 87.7 22 0.00047 32.5 14.1 129 50-207 168-319 (326)
225 PRK00208 thiG thiazole synthas 87.6 3.9 8.4E-05 36.5 8.5 87 5-97 109-207 (250)
226 cd07948 DRE_TIM_HCS Saccharomy 87.5 5.9 0.00013 35.1 9.8 127 22-172 70-217 (262)
227 PRK07315 fructose-bisphosphate 87.5 13 0.00029 33.6 12.1 109 36-205 15-130 (293)
228 TIGR01303 IMP_DH_rel_1 IMP deh 87.4 6.2 0.00013 38.1 10.6 119 26-172 227-360 (475)
229 TIGR00381 cdhD CO dehydrogenas 87.3 20 0.00043 34.0 13.4 160 3-171 175-359 (389)
230 PF01053 Cys_Met_Meta_PP: Cys/ 86.8 2 4.3E-05 40.3 6.6 71 49-128 108-181 (386)
231 TIGR01761 thiaz-red thiazoliny 86.6 2.3 5E-05 39.3 6.9 75 5-87 38-116 (343)
232 COG0148 Eno Enolase [Carbohydr 86.6 5.5 0.00012 37.8 9.3 111 4-122 265-384 (423)
233 TIGR01302 IMP_dehydrog inosine 86.6 3.5 7.7E-05 39.3 8.3 81 5-90 253-353 (450)
234 PRK13802 bifunctional indole-3 86.3 3.8 8.3E-05 41.5 8.7 76 3-80 147-231 (695)
235 PTZ00314 inosine-5'-monophosph 86.3 3.1 6.8E-05 40.3 7.9 75 5-80 270-364 (495)
236 cd04741 DHOD_1A_like Dihydroor 85.9 14 0.0003 33.1 11.4 118 51-200 148-293 (294)
237 cd07945 DRE_TIM_CMS Leptospira 85.8 7.4 0.00016 34.8 9.6 99 51-173 120-225 (280)
238 PRK11858 aksA trans-homoaconit 85.8 9.5 0.00021 35.5 10.6 141 30-200 33-186 (378)
239 PLN02535 glycolate oxidase 85.8 31 0.00067 32.3 13.9 31 49-79 92-122 (364)
240 PRK05567 inosine 5'-monophosph 85.8 5 0.00011 38.6 9.0 121 23-173 227-364 (486)
241 PRK04169 geranylgeranylglycery 85.3 25 0.00054 30.9 13.4 140 5-173 49-217 (232)
242 COG0191 Fba Fructose/tagatose 85.3 2.6 5.6E-05 38.3 6.4 34 36-69 15-52 (286)
243 PRK12999 pyruvate carboxylase; 85.3 45 0.00097 35.9 16.4 112 70-205 688-815 (1146)
244 PRK11197 lldD L-lactate dehydr 85.3 9.7 0.00021 35.9 10.4 126 52-208 237-366 (381)
245 TIGR01949 AroFGH_arch predicte 85.2 8.5 0.00018 33.7 9.5 83 4-88 124-222 (258)
246 PRK06852 aldolase; Validated 85.1 7.6 0.00017 35.5 9.4 87 4-90 155-262 (304)
247 TIGR00343 pyridoxal 5'-phospha 85.1 30 0.00065 31.5 13.3 138 4-173 55-232 (287)
248 COG2022 ThiG Uncharacterized e 85.0 4.4 9.6E-05 36.0 7.4 79 71-171 115-213 (262)
249 TIGR01306 GMP_reduct_2 guanosi 85.0 8.1 0.00018 35.6 9.5 107 37-172 110-230 (321)
250 cd04727 pdxS PdxS is a subunit 84.9 30 0.00066 31.4 13.3 141 3-173 52-229 (283)
251 PRK08195 4-hyroxy-2-oxovalerat 84.8 27 0.00059 32.1 13.0 117 47-199 63-184 (337)
252 TIGR03151 enACPred_II putative 84.6 5 0.00011 36.4 8.0 80 8-92 101-189 (307)
253 KOG0538 Glycolate oxidase [Ene 84.5 9.2 0.0002 35.4 9.5 93 49-173 215-311 (363)
254 TIGR02660 nifV_homocitr homoci 84.5 9.2 0.0002 35.4 9.8 100 50-173 117-219 (365)
255 PRK02227 hypothetical protein; 84.3 2.7 6E-05 37.1 5.9 160 18-202 2-181 (238)
256 cd02801 DUS_like_FMN Dihydrour 84.0 14 0.00031 31.0 10.2 133 7-171 14-158 (231)
257 PRK08649 inosine 5-monophospha 83.8 4.2 9.2E-05 38.0 7.3 75 5-80 176-276 (368)
258 TIGR01858 tag_bisphos_ald clas 83.8 19 0.00041 32.5 11.3 109 36-205 13-126 (282)
259 PRK07998 gatY putative fructos 83.6 34 0.00074 31.0 13.3 108 36-205 15-128 (283)
260 PRK00915 2-isopropylmalate syn 83.5 10 0.00022 36.9 10.1 100 50-173 124-230 (513)
261 COG0167 PyrD Dihydroorotate de 83.3 5.6 0.00012 36.5 7.7 88 60-169 97-193 (310)
262 cd02922 FCB2_FMN Flavocytochro 83.3 30 0.00065 32.0 12.6 30 49-78 84-113 (344)
263 PRK15063 isocitrate lyase; Pro 83.3 29 0.00063 33.3 12.7 165 4-206 51-220 (428)
264 PRK13957 indole-3-glycerol-pho 83.1 29 0.00063 30.8 12.0 111 50-199 31-149 (247)
265 PRK12344 putative alpha-isopro 83.1 10 0.00022 37.1 9.9 101 50-174 130-236 (524)
266 cd02803 OYE_like_FMN_family Ol 83.0 25 0.00054 31.4 11.8 100 50-172 196-314 (327)
267 COG1456 CdhE CO dehydrogenase/ 83.0 10 0.00022 35.8 9.3 91 5-98 148-241 (467)
268 PF01070 FMN_dh: FMN-dependent 82.9 8.6 0.00019 35.7 8.9 131 46-208 212-346 (356)
269 PRK09195 gatY tagatose-bisphos 82.6 21 0.00045 32.3 11.0 109 36-205 15-128 (284)
270 PF05690 ThiG: Thiazole biosyn 82.6 6 0.00013 35.2 7.3 145 5-171 21-206 (247)
271 PLN02623 pyruvate kinase 82.3 9.9 0.00022 37.8 9.5 88 4-93 305-417 (581)
272 cd07941 DRE_TIM_LeuA3 Desulfob 82.3 25 0.00054 31.1 11.4 147 31-199 28-191 (273)
273 KOG4201 Anthranilate synthase 82.3 5.7 0.00012 35.2 7.0 87 4-96 174-269 (289)
274 PRK04180 pyridoxal biosynthesi 82.2 19 0.0004 32.9 10.5 47 105-173 189-238 (293)
275 TIGR00977 LeuA_rel 2-isopropyl 82.2 11 0.00024 36.9 9.7 147 31-199 31-194 (526)
276 PRK13586 1-(5-phosphoribosyl)- 82.2 33 0.00072 29.8 13.4 142 5-171 62-220 (232)
277 PRK12344 putative alpha-isopro 82.1 17 0.00037 35.5 11.0 148 31-200 35-199 (524)
278 cd07938 DRE_TIM_HMGL 3-hydroxy 82.0 14 0.0003 32.9 9.7 98 51-173 119-227 (274)
279 KOG0053 Cystathionine beta-lya 82.0 5.4 0.00012 38.0 7.3 104 72-206 149-256 (409)
280 PRK05458 guanosine 5'-monophos 81.9 13 0.00028 34.3 9.6 120 25-173 98-234 (326)
281 PF04481 DUF561: Protein of un 81.8 36 0.00079 30.1 13.5 164 7-206 52-239 (242)
282 TIGR00222 panB 3-methyl-2-oxob 81.8 24 0.00051 31.7 11.0 153 5-171 4-182 (263)
283 PRK06552 keto-hydroxyglutarate 81.8 17 0.00036 31.4 9.8 112 48-194 3-126 (213)
284 PRK07695 transcriptional regul 81.8 29 0.00063 28.9 13.2 134 6-173 44-181 (201)
285 TIGR01496 DHPS dihydropteroate 81.6 12 0.00027 33.0 9.1 77 67-169 17-100 (257)
286 TIGR03470 HpnH hopanoid biosyn 81.6 41 0.00088 30.4 13.7 145 36-200 73-228 (318)
287 CHL00162 thiG thiamin biosynth 81.5 30 0.00065 31.2 11.4 82 70-173 121-222 (267)
288 cd04730 NPD_like 2-Nitropropan 81.5 12 0.00026 31.7 8.7 81 7-92 93-184 (236)
289 TIGR01306 GMP_reduct_2 guanosi 81.3 37 0.0008 31.3 12.3 92 51-171 74-167 (321)
290 TIGR01358 DAHP_synth_II 3-deox 81.3 6.7 0.00015 37.6 7.6 89 36-129 255-350 (443)
291 cd07943 DRE_TIM_HOA 4-hydroxy- 81.0 33 0.00071 30.0 11.6 117 48-199 61-181 (263)
292 cd07944 DRE_TIM_HOA_like 4-hyd 81.0 39 0.00084 29.9 12.6 117 49-199 58-178 (266)
293 PRK09389 (R)-citramalate synth 80.9 14 0.00031 35.8 9.9 100 51-174 119-221 (488)
294 cd00452 KDPG_aldolase KDPG and 80.9 9.7 0.00021 31.7 7.8 70 6-77 87-159 (190)
295 PRK13802 bifunctional indole-3 80.8 41 0.00089 34.3 13.4 102 4-116 99-206 (695)
296 cd00429 RPE Ribulose-5-phospha 80.7 30 0.00065 28.4 14.4 139 5-173 46-198 (211)
297 PRK05458 guanosine 5'-monophos 80.7 10 0.00022 35.0 8.5 75 5-80 128-221 (326)
298 TIGR03217 4OH_2_O_val_ald 4-hy 80.6 47 0.001 30.5 13.4 115 47-199 62-183 (333)
299 PRK05567 inosine 5'-monophosph 80.5 8.3 0.00018 37.1 8.2 75 5-80 257-351 (486)
300 PLN02898 HMP-P kinase/thiamin- 80.5 43 0.00094 32.2 13.1 135 4-173 339-479 (502)
301 PLN02291 phospho-2-dehydro-3-d 80.3 6.3 0.00014 38.1 7.2 89 36-129 275-370 (474)
302 PRK09389 (R)-citramalate synth 80.0 33 0.00072 33.2 12.1 139 31-199 32-183 (488)
303 TIGR01235 pyruv_carbox pyruvat 79.9 63 0.0014 34.8 15.0 111 71-205 687-813 (1143)
304 PRK06498 isocitrate lyase; Pro 79.9 9 0.00019 37.4 8.0 73 119-207 179-253 (531)
305 PRK03512 thiamine-phosphate py 79.5 38 0.00083 28.9 14.0 132 5-172 52-189 (211)
306 TIGR03531 selenium_SpcS O-phos 79.4 24 0.00052 33.8 10.9 80 47-129 160-246 (444)
307 PF01474 DAHP_synth_2: Class-I 79.4 5.1 0.00011 38.4 6.2 87 37-129 259-353 (439)
308 COG0119 LeuA Isopropylmalate/h 79.3 34 0.00074 32.5 11.7 145 30-200 31-187 (409)
309 PRK09250 fructose-bisphosphate 79.3 16 0.00035 34.1 9.3 87 4-90 180-315 (348)
310 PLN02229 alpha-galactosidase 79.1 2.5 5.5E-05 40.4 4.1 72 3-75 128-225 (427)
311 PLN02692 alpha-galactosidase 79.1 2.2 4.7E-05 40.6 3.6 64 3-66 121-208 (412)
312 TIGR00977 LeuA_rel 2-isopropyl 78.9 19 0.0004 35.3 10.1 99 51-173 127-232 (526)
313 PRK09140 2-dehydro-3-deoxy-6-p 78.8 41 0.00088 28.7 13.2 140 8-197 3-148 (206)
314 cd04732 HisA HisA. Phosphorib 78.8 20 0.00044 30.2 9.3 72 73-168 29-101 (234)
315 cd06282 PBP1_GntR_like_2 Ligan 78.7 25 0.00055 29.1 9.8 90 5-94 18-123 (266)
316 TIGR03128 RuMP_HxlA 3-hexulose 78.7 37 0.00079 28.2 12.0 97 19-124 4-108 (206)
317 PRK12737 gatY tagatose-bisphos 78.6 35 0.00076 30.8 11.1 85 36-169 15-104 (284)
318 cd04731 HisF The cyclase subun 78.4 18 0.00039 31.1 8.9 72 74-169 28-100 (243)
319 cd07945 DRE_TIM_CMS Leptospira 78.4 9.3 0.0002 34.2 7.3 100 78-199 79-187 (280)
320 PF03599 CdhD: CO dehydrogenas 78.3 12 0.00025 35.5 8.1 93 3-98 85-180 (386)
321 TIGR01163 rpe ribulose-phospha 78.0 37 0.00081 27.9 13.4 141 3-173 43-197 (210)
322 cd04728 ThiG Thiazole synthase 78.0 37 0.0008 30.3 10.8 46 106-173 162-208 (248)
323 PRK10014 DNA-binding transcrip 77.7 25 0.00055 30.8 9.9 90 5-94 83-189 (342)
324 PF01116 F_bP_aldolase: Fructo 77.7 13 0.00029 33.5 8.1 85 36-169 14-103 (287)
325 COG2159 Predicted metal-depend 77.6 4.8 0.0001 36.2 5.3 97 6-102 87-207 (293)
326 cd06285 PBP1_LacI_like_7 Ligan 77.5 32 0.0007 28.7 10.1 88 5-94 18-121 (265)
327 PRK08318 dihydropyrimidine deh 77.3 20 0.00044 33.6 9.6 85 59-168 99-199 (420)
328 PLN02858 fructose-bisphosphate 77.3 1E+02 0.0023 33.8 15.9 128 16-169 1071-1199(1378)
329 COG1456 CdhE CO dehydrogenase/ 77.1 48 0.001 31.5 11.6 126 50-217 150-278 (467)
330 cd00381 IMPDH IMPDH: The catal 76.7 14 0.0003 33.8 8.1 82 5-91 123-224 (325)
331 PLN02274 inosine-5'-monophosph 76.7 12 0.00026 36.5 8.0 74 6-80 278-371 (505)
332 PRK13209 L-xylulose 5-phosphat 76.7 22 0.00049 30.8 9.2 94 4-97 58-189 (283)
333 PRK07998 gatY putative fructos 76.7 8.5 0.00018 34.8 6.6 75 5-79 117-219 (283)
334 PRK07107 inosine 5-monophospha 76.6 41 0.00089 32.8 11.7 116 27-172 245-384 (502)
335 TIGR00970 leuA_yeast 2-isoprop 76.4 45 0.00098 33.0 12.0 147 30-199 55-230 (564)
336 cd04722 TIM_phosphate_binding 76.1 21 0.00046 28.1 8.2 74 6-80 103-190 (200)
337 PRK11840 bifunctional sulfur c 76.0 46 0.00099 30.9 11.2 45 106-172 236-281 (326)
338 PRK13585 1-(5-phosphoribosyl)- 76.0 17 0.00036 31.1 8.1 73 74-170 33-106 (241)
339 PRK02083 imidazole glycerol ph 75.8 22 0.00049 30.8 8.9 70 43-121 180-251 (253)
340 PRK07428 nicotinate-nucleotide 75.8 25 0.00054 31.8 9.4 66 45-121 202-267 (288)
341 PRK06702 O-acetylhomoserine am 75.7 19 0.00042 34.2 9.0 65 56-128 122-187 (432)
342 PRK15452 putative protease; Pr 75.4 16 0.00035 35.0 8.4 85 3-90 46-138 (443)
343 COG0107 HisF Imidazoleglycerol 75.4 60 0.0013 29.0 13.3 111 5-123 63-204 (256)
344 PRK07084 fructose-bisphosphate 75.3 33 0.00071 31.7 10.1 111 36-205 21-139 (321)
345 PLN03231 putative alpha-galact 75.1 4.8 0.0001 37.6 4.6 39 29-67 169-215 (357)
346 PRK12857 fructose-1,6-bisphosp 75.0 51 0.0011 29.8 11.1 85 36-169 15-104 (284)
347 PF10087 DUF2325: Uncharacteri 75.0 31 0.00067 25.5 8.5 75 5-81 12-95 (97)
348 cd01545 PBP1_SalR Ligand-bindi 74.9 35 0.00076 28.4 9.6 91 5-95 18-126 (270)
349 TIGR01859 fruc_bis_ald_ fructo 74.8 64 0.0014 29.0 14.3 142 7-170 64-231 (282)
350 PRK00208 thiG thiazole synthas 74.7 51 0.0011 29.4 10.8 46 106-173 162-208 (250)
351 PRK06015 keto-hydroxyglutarate 74.7 54 0.0012 28.1 16.3 60 48-122 86-148 (201)
352 cd06267 PBP1_LacI_sugar_bindin 74.6 42 0.00091 27.4 9.9 91 5-96 18-125 (264)
353 PLN02460 indole-3-glycerol-pho 74.6 74 0.0016 29.6 12.6 103 4-116 168-277 (338)
354 cd06303 PBP1_LuxPQ_Quorum_Sens 74.5 36 0.00078 29.0 9.8 90 4-94 18-138 (280)
355 cd06289 PBP1_MalI_like Ligand- 74.4 40 0.00087 27.9 9.8 91 5-95 18-125 (268)
356 PLN02808 alpha-galactosidase 74.4 4 8.6E-05 38.5 4.0 72 3-75 97-195 (386)
357 PRK11613 folP dihydropteroate 74.2 23 0.0005 32.0 8.7 75 67-168 32-114 (282)
358 cd00739 DHPS DHPS subgroup of 74.0 18 0.00039 32.0 7.9 62 67-128 18-86 (257)
359 COG1609 PurR Transcriptional r 74.0 30 0.00065 31.3 9.5 93 4-97 76-185 (333)
360 PRK06256 biotin synthase; Vali 74.0 34 0.00073 30.8 9.9 75 14-90 138-233 (336)
361 PRK07114 keto-hydroxyglutarate 73.7 34 0.00074 29.8 9.4 114 46-194 3-129 (222)
362 TIGR00433 bioB biotin syntheta 73.4 13 0.00027 32.7 6.8 82 5-88 100-202 (296)
363 TIGR03572 WbuZ glycosyl amidat 73.4 30 0.00066 29.4 9.0 49 74-124 31-80 (232)
364 cd00947 TBP_aldolase_IIB Tagat 72.8 70 0.0015 28.8 11.4 85 36-169 10-99 (276)
365 COG0119 LeuA Isopropylmalate/h 72.7 34 0.00074 32.5 9.8 100 50-173 121-225 (409)
366 PRK08610 fructose-bisphosphate 72.7 74 0.0016 28.8 12.1 34 36-69 15-52 (286)
367 cd08209 RLP_DK-MTP-1-P-enolase 72.5 56 0.0012 31.0 11.2 169 4-200 111-308 (391)
368 PRK05835 fructose-bisphosphate 72.5 60 0.0013 29.8 11.0 85 36-169 14-104 (307)
369 cd00945 Aldolase_Class_I Class 72.5 16 0.00035 29.4 6.7 75 5-80 100-192 (201)
370 TIGR01304 IMP_DH_rel_2 IMP deh 72.3 18 0.00039 33.9 7.8 74 6-80 178-275 (369)
371 TIGR00737 nifR3_yhdG putative 72.2 70 0.0015 28.8 11.4 77 7-97 22-98 (319)
372 cd01575 PBP1_GntR Ligand-bindi 71.9 43 0.00093 27.8 9.4 89 5-94 18-123 (268)
373 cd04734 OYE_like_3_FMN Old yel 71.9 62 0.0013 29.7 11.1 102 50-173 196-319 (343)
374 PRK11303 DNA-binding transcrip 71.8 51 0.0011 28.7 10.2 90 5-94 80-186 (328)
375 cd00377 ICL_PEPM Members of th 71.6 68 0.0015 28.0 10.9 100 58-171 68-182 (243)
376 cd00288 Pyruvate_Kinase Pyruva 71.4 32 0.00069 33.4 9.4 99 3-102 200-322 (480)
377 PRK07114 keto-hydroxyglutarate 71.3 15 0.00033 32.0 6.6 64 6-69 102-168 (222)
378 PRK09206 pyruvate kinase; Prov 71.2 36 0.00079 33.0 9.8 98 4-102 199-321 (470)
379 TIGR02814 pfaD_fam PfaD family 71.1 46 0.00099 32.1 10.3 20 152-171 236-255 (444)
380 PRK06843 inosine 5-monophospha 70.8 25 0.00055 33.4 8.5 75 5-80 182-276 (404)
381 TIGR01346 isocit_lyase isocitr 70.6 26 0.00056 34.5 8.6 72 119-206 151-224 (527)
382 PF03437 BtpA: BtpA family; I 70.0 50 0.0011 29.4 9.7 161 8-199 72-254 (254)
383 TIGR02151 IPP_isom_2 isopenten 69.9 31 0.00067 31.6 8.7 41 5-45 168-213 (333)
384 TIGR00973 leuA_bact 2-isopropy 69.9 39 0.00084 32.8 9.7 101 50-174 121-228 (494)
385 cd04736 MDH_FMN Mandelate dehy 69.8 21 0.00045 33.4 7.6 84 7-96 227-320 (361)
386 cd05564 PTS_IIB_chitobiose_lic 69.6 8.1 0.00018 28.9 4.0 60 5-64 16-76 (96)
387 cd04741 DHOD_1A_like Dihydroor 69.2 52 0.0011 29.4 9.8 26 58-85 90-115 (294)
388 COG0800 Eda 2-keto-3-deoxy-6-p 69.2 22 0.00048 31.0 7.1 53 22-80 71-124 (211)
389 cd06281 PBP1_LacI_like_5 Ligan 69.1 56 0.0012 27.4 9.6 90 5-94 18-123 (269)
390 TIGR00853 pts-lac PTS system, 69.0 8 0.00017 29.1 3.9 61 5-65 20-81 (95)
391 cd04726 KGPDC_HPS 3-Keto-L-gul 69.0 27 0.00059 28.7 7.5 65 5-69 92-168 (202)
392 TIGR03855 NAD_NadX aspartate d 68.8 22 0.00048 30.9 7.2 76 6-87 13-90 (229)
393 COG2099 CobK Precorrin-6x redu 68.8 89 0.0019 28.1 13.4 141 5-171 55-231 (257)
394 cd00956 Transaldolase_FSA Tran 68.7 75 0.0016 27.2 12.9 114 25-173 5-131 (211)
395 PF04131 NanE: Putative N-acet 68.5 36 0.00079 29.2 8.1 134 4-170 20-174 (192)
396 PRK07709 fructose-bisphosphate 68.4 92 0.002 28.2 11.6 34 36-69 15-52 (285)
397 cd00958 DhnA Class I fructose- 68.2 74 0.0016 27.0 12.5 90 56-171 119-216 (235)
398 PRK07094 biotin synthase; Prov 68.1 89 0.0019 27.9 15.9 48 153-200 264-314 (323)
399 cd06292 PBP1_LacI_like_10 Liga 68.0 71 0.0015 26.7 10.5 90 5-94 18-129 (273)
400 PF01791 DeoC: DeoC/LacD famil 67.9 6.8 0.00015 33.7 3.7 76 3-81 112-213 (236)
401 cd06295 PBP1_CelR Ligand bindi 67.9 60 0.0013 27.2 9.6 88 5-94 29-132 (275)
402 PF04909 Amidohydro_2: Amidohy 67.8 9.2 0.0002 32.2 4.5 49 50-98 121-175 (273)
403 PRK05718 keto-hydroxyglutarate 67.6 81 0.0018 27.2 15.4 83 22-122 73-159 (212)
404 cd08205 RuBisCO_IV_RLP Ribulos 67.5 31 0.00067 32.2 8.3 101 51-170 121-231 (367)
405 cd08205 RuBisCO_IV_RLP Ribulos 67.5 1.1E+02 0.0023 28.6 15.8 167 4-199 117-310 (367)
406 COG3598 RepA RecA-family ATPas 67.3 17 0.00037 34.1 6.3 119 2-129 114-242 (402)
407 cd06277 PBP1_LacI_like_1 Ligan 67.3 68 0.0015 26.8 9.8 88 5-94 21-125 (268)
408 cd04724 Tryptophan_synthase_al 67.2 84 0.0018 27.2 14.6 143 3-173 63-219 (242)
409 PRK13523 NADPH dehydrogenase N 67.2 68 0.0015 29.5 10.3 99 50-171 197-307 (337)
410 cd01292 metallo-dependent_hydr 67.0 70 0.0015 26.2 11.2 114 4-128 67-206 (275)
411 PRK12738 kbaY tagatose-bisphos 66.9 68 0.0015 29.0 10.1 115 30-169 8-132 (286)
412 PRK13753 dihydropteroate synth 66.9 99 0.0022 27.9 14.6 153 6-171 67-248 (279)
413 PF01070 FMN_dh: FMN-dependent 66.8 13 0.00027 34.6 5.5 85 6-96 215-311 (356)
414 cd06287 PBP1_LacI_like_8 Ligan 66.7 68 0.0015 27.4 9.8 89 4-94 25-125 (269)
415 TIGR03551 F420_cofH 7,8-dideme 66.7 1E+02 0.0022 28.0 13.7 44 153-197 285-331 (343)
416 cd06284 PBP1_LacI_like_6 Ligan 66.6 60 0.0013 26.8 9.2 89 5-95 18-123 (267)
417 cd01537 PBP1_Repressors_Sugar_ 66.5 69 0.0015 26.0 10.0 92 5-96 18-127 (264)
418 PLN03228 methylthioalkylmalate 66.4 59 0.0013 31.8 10.2 99 50-173 213-320 (503)
419 cd04733 OYE_like_2_FMN Old yel 66.4 89 0.0019 28.4 10.9 99 50-171 204-324 (338)
420 PRK15447 putative protease; Pr 66.3 49 0.0011 29.8 9.1 99 3-115 48-150 (301)
421 cd06309 PBP1_YtfQ_like Peripla 66.2 68 0.0015 26.9 9.6 92 4-95 17-132 (273)
422 PF04476 DUF556: Protein of un 66.2 15 0.00032 32.5 5.5 161 18-202 2-181 (235)
423 PTZ00066 pyruvate kinase; Prov 66.1 52 0.0011 32.3 9.7 99 3-102 236-358 (513)
424 cd04743 NPD_PKS 2-Nitropropane 66.0 89 0.0019 28.8 10.8 55 26-90 72-127 (320)
425 TIGR00674 dapA dihydrodipicoli 65.9 73 0.0016 28.1 10.0 80 71-168 17-99 (285)
426 cd06279 PBP1_LacI_like_3 Ligan 65.9 59 0.0013 27.7 9.2 89 5-94 23-123 (283)
427 PRK08645 bifunctional homocyst 65.6 56 0.0012 32.5 10.1 71 50-126 155-232 (612)
428 PTZ00378 hypothetical protein; 65.6 36 0.00078 33.5 8.4 92 5-96 332-436 (518)
429 PLN02334 ribulose-phosphate 3- 65.5 86 0.0019 26.7 13.4 136 6-173 58-206 (229)
430 cd01541 PBP1_AraR Ligand-bindi 65.4 64 0.0014 27.0 9.2 90 5-94 18-128 (273)
431 cd01544 PBP1_GalR Ligand-bindi 65.4 74 0.0016 26.8 9.7 88 5-95 23-120 (270)
432 cd06298 PBP1_CcpA_like Ligand- 65.3 72 0.0016 26.4 9.5 89 5-95 18-124 (268)
433 PRK14847 hypothetical protein; 65.3 95 0.0021 28.8 10.9 145 30-199 61-233 (333)
434 cd04742 NPD_FabD 2-Nitropropan 65.2 1.3E+02 0.0029 28.8 12.5 20 152-171 231-250 (418)
435 cd05565 PTS_IIB_lactose PTS_II 65.2 23 0.00049 27.0 5.8 62 5-66 17-79 (99)
436 PLN02417 dihydrodipicolinate s 65.1 78 0.0017 28.0 10.1 101 70-199 19-124 (280)
437 KOG2670 Enolase [Carbohydrate 65.0 42 0.00091 31.5 8.3 90 7-97 281-376 (433)
438 PRK03170 dihydrodipicolinate s 65.0 80 0.0017 27.9 10.1 81 70-168 19-102 (292)
439 cd08206 RuBisCO_large_I_II_III 64.9 1.1E+02 0.0025 29.1 11.6 168 4-200 119-317 (414)
440 PRK12399 tagatose 1,6-diphosph 64.9 56 0.0012 30.3 9.2 91 5-97 144-278 (324)
441 PLN02979 glycolate oxidase 64.7 35 0.00076 32.1 8.0 71 8-79 215-297 (366)
442 TIGR02417 fruct_sucro_rep D-fr 64.6 96 0.0021 27.0 10.9 90 5-94 79-185 (327)
443 PLN02762 pyruvate kinase compl 64.5 61 0.0013 31.8 9.8 99 3-102 229-353 (509)
444 PRK13210 putative L-xylulose 5 64.2 51 0.0011 28.4 8.6 94 4-97 53-184 (284)
445 TIGR00007 phosphoribosylformim 64.1 58 0.0013 27.5 8.8 71 74-168 29-100 (230)
446 COG0854 PdxJ Pyridoxal phospha 64.1 1.1E+02 0.0023 27.3 11.5 106 44-180 48-161 (243)
447 cd06343 PBP1_ABC_ligand_bindin 63.9 1E+02 0.0023 27.2 10.7 37 61-98 118-155 (362)
448 cd02811 IDI-2_FMN Isopentenyl- 63.8 43 0.00093 30.5 8.3 75 5-80 167-275 (326)
449 PRK06739 pyruvate kinase; Vali 63.8 71 0.0015 29.8 9.8 107 4-116 192-323 (352)
450 PRK06247 pyruvate kinase; Prov 63.8 44 0.00096 32.5 8.7 98 3-102 199-318 (476)
451 TIGR01232 lacD tagatose 1,6-di 63.7 35 0.00076 31.6 7.6 91 5-97 145-279 (325)
452 PRK14987 gluconate operon tran 63.6 1E+02 0.0022 26.9 10.7 88 5-93 82-186 (331)
453 PF05853 DUF849: Prokaryotic p 63.5 6.3 0.00014 35.2 2.7 134 3-164 126-259 (272)
454 TIGR01949 AroFGH_arch predicte 63.3 1E+02 0.0022 26.8 10.7 81 57-168 134-226 (258)
455 PRK07315 fructose-bisphosphate 63.2 47 0.001 30.0 8.4 74 6-79 120-222 (293)
456 PF00224 PK: Pyruvate kinase, 63.1 13 0.00029 34.3 4.9 106 4-115 203-332 (348)
457 PRK07812 O-acetylhomoserine am 63.0 22 0.00048 33.7 6.5 52 71-129 144-196 (436)
458 TIGR02151 IPP_isom_2 isopenten 63.0 1.2E+02 0.0027 27.6 12.0 88 57-168 111-209 (333)
459 TIGR01303 IMP_DH_rel_1 IMP deh 62.9 37 0.0008 32.9 8.0 74 6-80 255-348 (475)
460 COG0167 PyrD Dihydroorotate de 62.8 1.3E+02 0.0027 27.7 14.1 113 58-205 160-296 (310)
461 COG3010 NanE Putative N-acetyl 62.8 1.1E+02 0.0024 27.0 12.7 137 3-168 53-208 (229)
462 cd02808 GltS_FMN Glutamate syn 62.6 1.4E+02 0.003 28.0 11.7 32 49-80 202-235 (392)
463 PF00448 SRP54: SRP54-type pro 62.5 91 0.002 26.2 9.6 112 3-123 43-172 (196)
464 PRK00507 deoxyribose-phosphate 62.5 83 0.0018 27.2 9.5 76 61-164 125-203 (221)
465 COG0329 DapA Dihydrodipicolina 62.4 77 0.0017 28.6 9.6 41 52-93 66-106 (299)
466 PF02126 PTE: Phosphotriestera 62.4 14 0.00029 33.8 4.8 113 5-126 67-215 (308)
467 TIGR00167 cbbA ketose-bisphosp 62.4 1.2E+02 0.0026 27.4 11.4 34 36-69 15-52 (288)
468 cd00423 Pterin_binding Pterin 62.2 31 0.00068 30.2 6.9 60 68-128 19-86 (258)
469 TIGR01064 pyruv_kin pyruvate k 62.2 44 0.00095 32.3 8.4 99 3-102 197-320 (473)
470 PF01729 QRPTase_C: Quinolinat 62.1 51 0.0011 27.4 7.8 65 45-121 86-151 (169)
471 TIGR01481 ccpA catabolite cont 61.8 83 0.0018 27.3 9.6 89 5-94 78-183 (329)
472 PRK04128 1-(5-phosphoribosyl)- 61.5 23 0.00051 30.6 5.9 59 5-65 62-124 (228)
473 PLN02495 oxidoreductase, actin 61.4 55 0.0012 30.9 8.7 91 5-97 101-218 (385)
474 cd06273 PBP1_GntR_like_1 This 61.3 94 0.002 25.8 9.7 90 5-95 18-124 (268)
475 cd08208 RLP_Photo Ribulose bis 61.1 1.6E+02 0.0034 28.3 14.7 167 4-199 147-340 (424)
476 PRK07226 fructose-bisphosphate 61.1 1.2E+02 0.0025 26.7 11.0 84 55-168 135-230 (267)
477 PRK08883 ribulose-phosphate 3- 61.0 1.1E+02 0.0024 26.4 14.1 139 4-172 45-198 (220)
478 PTZ00300 pyruvate kinase; Prov 60.9 61 0.0013 31.3 9.1 98 4-102 174-295 (454)
479 cd00959 DeoC 2-deoxyribose-5-p 60.5 1E+02 0.0022 25.9 9.7 86 52-164 110-198 (203)
480 TIGR00735 hisF imidazoleglycer 60.5 56 0.0012 28.4 8.2 74 74-171 31-105 (254)
481 PRK00748 1-(5-phosphoribosyl)- 60.4 72 0.0016 26.9 8.7 72 74-169 31-103 (233)
482 PLN02535 glycolate oxidase 60.4 41 0.00088 31.5 7.6 73 7-80 214-298 (364)
483 cd00954 NAL N-Acetylneuraminic 60.3 1.2E+02 0.0027 26.8 10.5 25 71-95 19-44 (288)
484 PRK06015 keto-hydroxyglutarate 60.1 25 0.00053 30.2 5.7 74 6-84 87-164 (201)
485 cd06296 PBP1_CatR_like Ligand- 60.1 1E+02 0.0022 25.7 9.5 88 5-94 18-124 (270)
486 PRK13753 dihydropteroate synth 60.0 51 0.0011 29.8 7.9 72 67-164 19-98 (279)
487 PRK09427 bifunctional indole-3 59.8 1.7E+02 0.0036 28.3 11.9 102 4-116 98-205 (454)
488 PRK06801 hypothetical protein; 59.7 1.4E+02 0.0029 27.1 16.5 175 5-196 6-201 (286)
489 cd02932 OYE_YqiM_FMN Old yello 59.5 1.4E+02 0.003 27.1 11.9 98 49-169 208-320 (336)
490 PF04263 TPK_catalytic: Thiami 59.5 57 0.0012 25.6 7.3 82 36-123 36-120 (123)
491 PRK12656 fructose-6-phosphate 59.3 99 0.0021 27.0 9.4 109 25-169 6-131 (222)
492 PLN02493 probable peroxisomal 59.3 49 0.0011 31.1 8.0 71 9-80 217-299 (367)
493 PRK09485 mmuM homocysteine met 59.3 1.4E+02 0.0029 26.9 11.1 70 51-126 171-248 (304)
494 PRK06354 pyruvate kinase; Prov 59.2 70 0.0015 32.0 9.4 106 4-115 205-335 (590)
495 PF00532 Peripla_BP_1: Peripla 59.1 1.2E+02 0.0026 26.4 10.1 90 5-95 20-127 (279)
496 PRK05613 O-acetylhomoserine am 59.1 43 0.00094 31.8 7.7 68 53-129 127-196 (437)
497 PRK05437 isopentenyl pyrophosp 59.0 50 0.0011 30.5 7.9 75 5-80 175-281 (352)
498 TIGR01329 cysta_beta_ly_E cyst 59.0 83 0.0018 29.0 9.4 52 71-129 120-172 (378)
499 cd06320 PBP1_allose_binding Pe 59.0 1.1E+02 0.0023 25.7 9.9 90 5-94 18-129 (275)
500 PRK08114 cystathionine beta-ly 58.7 45 0.00097 31.4 7.7 66 55-129 122-190 (395)
No 1
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=100.00 E-value=4e-64 Score=443.04 Aligned_cols=219 Identities=91% Similarity=1.427 Sum_probs=216.1
Q ss_pred ChhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 027740 1 MVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 1 ~~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e 80 (219)
|++||+||+++++++|++++|+++++++++.+++++|++|||+|+|+|++||+++|++||||+||+|++++++||..|+|
T Consensus 72 ~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~~DilQIgAr~~rqtdLL~a~~~tgkpV~lKkGq~~t~~e~~~aae 151 (290)
T PLN03033 72 MAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCAPSVMRNSAE 151 (290)
T ss_pred HHHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhhCcEEeeCcHHHHHHHHHHHHHccCCeEEeCCCCCCCHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH
Q 027740 81 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA 160 (219)
Q Consensus 81 ~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAva 160 (219)
+|.+.||++|+|||||++|+|.+..+|+++++.||++|+||++|+||++|+|++.+++++|+.++|+|++++.+++||+|
T Consensus 152 ki~~~GN~~viLcERG~tFgy~~lv~D~r~ip~mk~~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA 231 (290)
T PLN03033 152 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVA 231 (290)
T ss_pred HHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCccccccCCCCCC
Q 027740 161 VGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDLTPFRD 219 (219)
Q Consensus 161 lGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~~~~~~~~~~~~~~ 219 (219)
+||||+|||+|++|++||+|++++++|++|++|+++++++++++++++|..||+||.||
T Consensus 232 ~GaDGlfiEvHpdP~~AlsDg~q~l~~~~l~~ll~~l~~i~~~~~~~~~~~~~~~~~~~ 290 (290)
T PLN03033 232 VGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEELLEELIAIARVTKGKQRFQIDLTPYRD 290 (290)
T ss_pred hCCCEEEEEecCCccccCCCcccCcCHHHHHHHHHHHHHHHHHHhccccCccCcccCCC
Confidence 99999999999999999999999999999999999999999999999999999999997
No 2
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=100.00 E-value=1.8e-59 Score=409.53 Aligned_cols=200 Identities=63% Similarity=1.004 Sum_probs=194.7
Q ss_pred ChhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 027740 1 MVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 1 ~~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e 80 (219)
+++||+||+++++++|++++|+++++.+++.+++++|++|||+|+|+|++||+++|+++|||+||+|+++|++||+.|+|
T Consensus 58 ~eeGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aae 137 (258)
T TIGR01362 58 LEEGLKILQKVKEEFGVPILTDVHESSQCEPVAEVVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVE 137 (258)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhhCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH
Q 027740 81 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA 160 (219)
Q Consensus 81 ~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAva 160 (219)
+|.+.||++|+|||||++|+|.+..+|+++++.||++++||++|+||++|+|++ +|..++|+|++++.+++||+|
T Consensus 138 yi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~~~~PVi~DpSHsvq~pg~-----~g~~s~G~r~~v~~la~AAvA 212 (258)
T TIGR01362 138 KVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMRELGCPVIFDATHSVQQPGG-----LGGASGGLREFVPTLARAAVA 212 (258)
T ss_pred HHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCC-----CCCCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999989999999999999999999999999999985 588899999999999999999
Q ss_pred cCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 027740 161 VGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSK 205 (219)
Q Consensus 161 lGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg 205 (219)
+||||+|||+|++|++||+|++++++|++|++|+++++++++++.
T Consensus 213 ~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l~~i~~~~~ 257 (258)
T TIGR01362 213 VGIDGLFMETHPDPKNAKSDGPNMLPLSELEGLLEKLLAIDALTK 257 (258)
T ss_pred hCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998764
No 3
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=100.00 E-value=3.7e-59 Score=408.63 Aligned_cols=198 Identities=59% Similarity=0.931 Sum_probs=192.9
Q ss_pred ChhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 027740 1 MVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 1 ~~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e 80 (219)
+++||+||+++++++|++++|+++++++++.+.+++|++|||+|+|+|++||+++|++||||+||+|+++|++||+.|+|
T Consensus 66 ~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aae 145 (264)
T PRK05198 66 LEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEVVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVD 145 (264)
T ss_pred hHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhhCcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH
Q 027740 81 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA 160 (219)
Q Consensus 81 ~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAva 160 (219)
+|.+.||++|+|||||++|+|.++.+|+++++.||++++||++|+||++|+|++ ++..++|+|++++.+++||+|
T Consensus 146 yi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k~~~lPVi~DpSHsvq~pg~-----~~~~s~G~r~~v~~la~AAvA 220 (264)
T PRK05198 146 KVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMRETGAPVIFDATHSVQLPGG-----QGGSSGGQREFVPVLARAAVA 220 (264)
T ss_pred HHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHhhCCCCEEEeCCccccCCCC-----CCCCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999779999999999999985 588899999999999999999
Q ss_pred cCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 027740 161 VGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKV 203 (219)
Q Consensus 161 lGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~ 203 (219)
+||||+|||+|++|++||+|++++++|++|++|++++++++++
T Consensus 221 ~GadGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l~~i~~~ 263 (264)
T PRK05198 221 VGVAGLFIETHPDPDNALSDGPNMLPLDKLEPLLEQLKAIDDL 263 (264)
T ss_pred cCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999875
No 4
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=100.00 E-value=2.3e-58 Score=406.23 Aligned_cols=201 Identities=48% Similarity=0.769 Sum_probs=195.7
Q ss_pred ChhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 027740 1 MVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 1 ~~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e 80 (219)
+++||+||+++++++|++++|+++|+++++.+.+++|++|||+|+|+|++||+++|++||||+||+|++++++||..|+|
T Consensus 72 ~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae 151 (281)
T PRK12457 72 LDEGLRIFEEVKARFGVPVITDVHEVEQAAPVAEVADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVS 151 (281)
T ss_pred HHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhhCeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhc--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 81 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREA--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 81 ~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
+|.+.||++|+|||||++|+|.+..+|+++|+.||++ |+||++|+||++|+|++ ++..++|+|++++.+++||
T Consensus 152 ~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~-----~g~~s~G~re~v~~larAA 226 (281)
T PRK12457 152 KCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDP-----LGAASGGRRRQVLDLARAG 226 (281)
T ss_pred HHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCC-----CCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999993 99999999999999985 5888899999999999999
Q ss_pred HHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 027740 159 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 206 (219)
Q Consensus 159 valGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~ 206 (219)
+|+||||+|||+|++|++||||++++|++++|++|+++++.++++++.
T Consensus 227 vA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~l~~~l~~i~~~~~~ 274 (281)
T PRK12457 227 MAVGLAGLFLEAHPDPDRARCDGPSALPLDQLEPFLSQVKALDDLVKS 274 (281)
T ss_pred HHhCCCEEEEEecCCccccCCCcccccCHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999876
No 5
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=100.00 E-value=5.9e-57 Score=409.45 Aligned_cols=189 Identities=35% Similarity=0.529 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 027740 2 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 2 ~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~ 81 (219)
++||++|+++|+++|++|+||+||+.+++++.+++|++||||++|+|++||+++|+++|||+|||||++|++||+.|+++
T Consensus 143 ~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~ 222 (335)
T PRK08673 143 EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEYVDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEY 222 (335)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEeecC-CC-CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 82 VRLAGNPNVMVCERGT-MF-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 82 i~~~Gn~~i~L~~cgs-~~-~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
|.+.||++++|||||+ +| +|+++++||++|+.||+ |++||++||||+. |.|++++.+++||
T Consensus 223 i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~----------------G~~~~v~~~a~AA 286 (335)
T PRK08673 223 ILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHAT----------------GKRDLVEPLALAA 286 (335)
T ss_pred HHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCC----------------ccccchHHHHHHH
Confidence 9999999999999977 68 88889999999999999 9999999999995 8899999999999
Q ss_pred HHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 027740 159 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 206 (219)
Q Consensus 159 valGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~ 206 (219)
+|+||||+|||+|||||++++||++|++|++|++|++++|.+++++|.
T Consensus 287 vA~GAdGliIE~H~~pd~alsD~~~sl~p~e~~~lv~~i~~i~~~~g~ 334 (335)
T PRK08673 287 VAAGADGLIVEVHPDPEKALSDGPQSLTPEEFEELMKKLRAIAEALGR 334 (335)
T ss_pred HHhCCCEEEEEecCCcccCCCcchhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999986
No 6
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=100.00 E-value=6.7e-57 Score=397.08 Aligned_cols=182 Identities=34% Similarity=0.501 Sum_probs=176.9
Q ss_pred hhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 027740 2 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 2 ~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~ 81 (219)
++||++|+++|+++||+|+|||||+.+++++.+++|++||||++++|++||+++|++||||+|||||++|++||+.|+++
T Consensus 75 ~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~ 154 (260)
T TIGR01361 75 EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEYADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEY 154 (260)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEeecC-CC-CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 82 VRLAGNPNVMVCERGT-MF-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 82 i~~~Gn~~i~L~~cgs-~~-~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
|++.||++++|||||+ +| ||+++++||++|+.||+ |++||||||||+. |.|+++..++++|
T Consensus 155 i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~----------------G~r~~~~~~~~aA 218 (260)
T TIGR01361 155 ILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAA----------------GRRDLVIPLAKAA 218 (260)
T ss_pred HHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCC----------------CccchHHHHHHHH
Confidence 9999999999999966 68 99999999999999999 9999999999995 8899999999999
Q ss_pred HHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 159 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 159 valGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
+++||+|+|||+||||||+++||++|++|++|++|++++|+
T Consensus 219 va~Ga~gl~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i~~ 259 (260)
T TIGR01361 219 IAAGADGLMIEVHPDPEKALSDSKQQLTPEEFKRLVKELRA 259 (260)
T ss_pred HHcCCCEEEEEeCCCccccCCcchhcCCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999986
No 7
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=100.00 E-value=7.6e-57 Score=410.36 Aligned_cols=191 Identities=31% Similarity=0.495 Sum_probs=185.1
Q ss_pred hhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 027740 2 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 2 ~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~ 81 (219)
++||++|+++++++||+|+|||||+.+++++.+++|++|||||+|+|++||+++|++||||+|||||++|++||+.|+|+
T Consensus 151 ~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~ 230 (352)
T PRK13396 151 ESALELLAAAREATGLGIITEVMDAADLEKIAEVADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEY 230 (352)
T ss_pred HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhhCCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEeecC-CC--CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 027740 82 VRLAGNPNVMVCERGT-MF--GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 157 (219)
Q Consensus 82 i~~~Gn~~i~L~~cgs-~~--~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~a 157 (219)
|.+.||++++|||||+ +| +|+++++||++|+.||+ ||+||++|+||+. |.+++++.+++|
T Consensus 231 i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~----------------G~sd~~~~~a~A 294 (352)
T PRK13396 231 ILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGT----------------GKSEYVPSMAMA 294 (352)
T ss_pred HHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccC----------------CcHHHHHHHHHH
Confidence 9999999999999998 46 68889999999999999 8999999999996 899999999999
Q ss_pred HHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCc
Q 027740 158 AIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQ 208 (219)
Q Consensus 158 AvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~~~ 208 (219)
|+|+||||+|||+|||||++++||++|++|++|++|++++|.+++++|+..
T Consensus 295 Ava~GAdGliIE~H~~pd~AlsD~~qsl~p~~~~~l~~~i~~i~~~~g~~~ 345 (352)
T PRK13396 295 AIAAGTDSLMIEVHPNPAKALSDGPQSLTPDRFDRLMQELAVIGKTVGRWP 345 (352)
T ss_pred HHhhCCCeEEEEecCCcccCCChhhhcCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999999999999999999854
No 8
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=100.00 E-value=6.2e-56 Score=392.14 Aligned_cols=187 Identities=36% Similarity=0.560 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 027740 2 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 2 ~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~ 81 (219)
++||++|+++|+++||+|+|||||+.+++++.+++|++||||++++|++||+++|++||||+|||||++|++||+.|+++
T Consensus 77 ~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~ 156 (266)
T PRK13398 77 EEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEY 156 (266)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEeecC-CC-CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 82 VRLAGNPNVMVCERGT-MF-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 82 i~~~Gn~~i~L~~cgs-~~-~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
|++.||++++|||||+ ++ +|+++++|+++|+.||+ +++||++||||++ |.|+++..++++|
T Consensus 157 i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~----------------G~~~~v~~~~~aA 220 (266)
T PRK13398 157 IMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHAT----------------GRRELVIPMAKAA 220 (266)
T ss_pred HHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcc----------------cchhhHHHHHHHH
Confidence 9999999999999998 35 68888999999999999 8999999999996 8899999999999
Q ss_pred HHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 159 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 159 valGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
+++||+|+|||+||||||+++||++|++|+||++|++.+|.+++++
T Consensus 221 va~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i~~~~~~~ 266 (266)
T PRK13398 221 IAAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDELKPMAKAL 266 (266)
T ss_pred HHcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999998764
No 9
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=100.00 E-value=3e-55 Score=383.93 Aligned_cols=182 Identities=28% Similarity=0.445 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 027740 2 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 2 ~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~ 81 (219)
++||++|+++|+++||+|+|||||+.+++++.+++|++||||++++|++||+++|++||||+||||+++|++||+.|+|+
T Consensus 65 ~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~ 144 (250)
T PRK13397 65 LQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYDYLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSY 144 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHhcCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999977799999999999
Q ss_pred HHHcCCCcEEEEeecC-CCCCC-CCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 82 VRLAGNPNVMVCERGT-MFGYN-DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 82 i~~~Gn~~i~L~~cgs-~~~~~-~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
|++.||++++|||||+ .||.+ ++.+||++|+.||+ |++||++|+||+. |.|++++.+++||
T Consensus 145 i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~----------------G~r~~v~~~a~AA 208 (250)
T PRK13397 145 LQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHST----------------GRRDLLLPAAKIA 208 (250)
T ss_pred HHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCC----------------cccchHHHHHHHH
Confidence 9999999999999555 56433 34899999999999 9999999999994 8999999999999
Q ss_pred HHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 159 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 159 valGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
+|+||+|+|||+||+||+|++|+++||+|++|++|++++|.
T Consensus 209 vA~GAdGl~IE~H~~P~~A~sD~~q~l~~~~l~~l~~~~~~ 249 (250)
T PRK13397 209 KAVGANGIMMEVHPDPDHALSDAAQQIDYKQLEQLGQELWQ 249 (250)
T ss_pred HHhCCCEEEEEecCCcccccCchhhhCCHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999874
No 10
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=100.00 E-value=2.9e-54 Score=395.48 Aligned_cols=188 Identities=31% Similarity=0.473 Sum_probs=178.8
Q ss_pred hhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 027740 2 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 2 ~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~ 81 (219)
.+|+++|+++|+++||+|+|||||+.+++++.+++|+|||||++++|++||+++|++||||+|||||++|++||+.|+++
T Consensus 168 ~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~ 247 (360)
T PRK12595 168 VEGLKILKQVADEYGLAVISEIVNPADVEVALDYVDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEY 247 (360)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHhCCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999997799999999999
Q ss_pred HHHcCCCcEEEEe-ecCCCCCC-CCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 82 VRLAGNPNVMVCE-RGTMFGYN-DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 82 i~~~Gn~~i~L~~-cgs~~~~~-~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
|.+.||++|+||| |+++||.+ .+++||++|+.||+ |++||||||||+. |+|++++.+++||
T Consensus 248 i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~----------------G~r~~~~~~a~aA 311 (360)
T PRK12595 248 IMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHST----------------GRRDLLLPTAKAA 311 (360)
T ss_pred HHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCC----------------cchhhHHHHHHHH
Confidence 9999999999999 66678644 67799999999999 9999999999994 8899999999999
Q ss_pred HHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 027740 159 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSK 205 (219)
Q Consensus 159 valGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg 205 (219)
+|+||||+|||+||+|+++++||++|++|++|++|++.+|.+.+.+.
T Consensus 312 va~GAdg~~iE~H~dp~~a~~D~~~sl~p~el~~l~~~i~~~~~~~~ 358 (360)
T PRK12595 312 LAIGADGVMAEVHPDPAVALSDSAQQMDIPEFDRFLDELKPLANKLN 358 (360)
T ss_pred HHcCCCeEEEEecCCCCCCCCchhhhCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999988753
No 11
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=100.00 E-value=5.3e-54 Score=389.57 Aligned_cols=183 Identities=18% Similarity=0.184 Sum_probs=176.0
Q ss_pred hhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 027740 2 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 2 ~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e 80 (219)
.+++++|+++|+++||+|+|||||.++++++.++ +++|||||++++|+|||+++|++||||||||||+ |++||+.|++
T Consensus 75 ~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGma-tl~Ei~~Av~ 153 (329)
T TIGR03569 75 EEDHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGMA-TLEEIEAAVG 153 (329)
T ss_pred HHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHH
Confidence 4789999999999999999999999999999999 9999999999999999999999999999999998 9999999999
Q ss_pred HHHHcCCC--cEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 027740 81 KVRLAGNP--NVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 157 (219)
Q Consensus 81 ~i~~~Gn~--~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~a 157 (219)
++++.||+ +++||||+|.||++++++||++|++||+ |++|||| |||+. | ..++++
T Consensus 154 ~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~-SdHt~----------------G-----~~~~~a 211 (329)
T TIGR03569 154 VLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGY-SDHTL----------------G-----IEAPIA 211 (329)
T ss_pred HHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEE-CCCCc----------------c-----HHHHHH
Confidence 99999998 5999999999999999999999999999 9999998 99995 6 688999
Q ss_pred HHHcCCcEEEEeeecCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 027740 158 AIAVGVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKGKQR 209 (219)
Q Consensus 158 AvalGA~GlvIEkH~t~d~a~--~D~~~sl~p~el~~lv~~ir~i~~~lg~~~~ 209 (219)
|+|+||+ ||||||||||++ +||++|++|+||++||+.+|.++.++|+.++
T Consensus 212 AvalGA~--iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~~~~lG~~~k 263 (329)
T TIGR03569 212 AVALGAT--VIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNVEKALGDGVK 263 (329)
T ss_pred HHHcCCC--EEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 9999998 999999999999 6999999999999999999999999998654
No 12
>TIGR03586 PseI pseudaminic acid synthase.
Probab=100.00 E-value=2e-53 Score=385.55 Aligned_cols=180 Identities=19% Similarity=0.164 Sum_probs=173.4
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
+..|++||+++||+|+|||||.++++++.++ ++++||||++++|+|||+++|++||||+|||||+ |++||+.|+++|.
T Consensus 79 ~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~-t~~Ei~~Av~~i~ 157 (327)
T TIGR03586 79 HKELFERAKELGLTIFSSPFDETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIA-TLEEIQEAVEACR 157 (327)
T ss_pred HHHHHHHHHHhCCcEEEccCCHHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCC-CHHHHHHHHHHHH
Confidence 4679999999999999999999999999999 9999999999999999999999999999999998 9999999999999
Q ss_pred HcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 027740 84 LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 162 (219)
Q Consensus 84 ~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalG 162 (219)
+.||++++||||++.||++++++||++|++||+ |++|||| |||+. | ..+++||+|+|
T Consensus 158 ~~g~~~i~LlhC~s~YP~~~~~~nL~~i~~lk~~f~~pVG~-SDHt~----------------G-----~~~~~aAva~G 215 (327)
T TIGR03586 158 EAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGL-SDHTL----------------G-----ILAPVAAVALG 215 (327)
T ss_pred HCCCCcEEEEecCCCCCCCcccCCHHHHHHHHHHhCCCEEe-eCCCC----------------c-----hHHHHHHHHcC
Confidence 999999999999999999999999999999999 9999999 89994 7 68899999999
Q ss_pred CcEEEEeeecCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 027740 163 VDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKGKQR 209 (219)
Q Consensus 163 A~GlvIEkH~t~d~a~--~D~~~sl~p~el~~lv~~ir~i~~~lg~~~~ 209 (219)
|+ |||||||||+++ +||++|++|+||++|++.+|.++.++|+.++
T Consensus 216 A~--iIEkH~tld~~l~G~D~~~Sl~p~e~~~lv~~ir~~~~~lg~~~k 262 (327)
T TIGR03586 216 AC--VIEKHFTLDRSDGGVDSAFSLEPDEFKALVKEVRNAWLALGEVNY 262 (327)
T ss_pred CC--EEEeCCChhhcCCCCChhccCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 98 999999999999 6999999999999999999999999999655
No 13
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=100.00 E-value=1.6e-53 Score=372.06 Aligned_cols=181 Identities=18% Similarity=0.150 Sum_probs=152.0
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 82 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i 82 (219)
-.+.|+++|++.||.|++||||+++++++.++ +++|||+|++++|++||+++|++||||||||||+ |++|++.|++.+
T Consensus 57 ~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~s-tl~EI~~Av~~~ 135 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMS-TLEEIERAVEVL 135 (241)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCC-CHHHHHHHHHHH
Confidence 46889999999999999999999999999999 9999999999999999999999999999999999 999999999999
Q ss_pred HHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 027740 83 RLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 161 (219)
Q Consensus 83 ~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAval 161 (219)
+..||.+++|+||+|.||.+.+++||++|++||+ |++|||| |||+. | ..++.+|+++
T Consensus 136 ~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~~~vG~-SDHt~----------------g-----~~~~~~Aval 193 (241)
T PF03102_consen 136 REAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFGVPVGY-SDHTD----------------G-----IEAPIAAVAL 193 (241)
T ss_dssp HHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHSTSEEEE-EE-SS----------------S-----SHHHHHHHHT
T ss_pred HhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcCCCEEe-CCCCC----------------C-----cHHHHHHHHc
Confidence 9999999999999999999999999999999999 9999999 99995 6 6789999999
Q ss_pred CCcEEEEeeecCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCCCcc
Q 027740 162 GVDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKGKQR 209 (219)
Q Consensus 162 GA~GlvIEkH~t~d~a~--~D~~~sl~p~el~~lv~~ir~i~~~lg~~~~ 209 (219)
||. |||||||+||++ +||.+|++|+||++||+.+|+++.++|+.+|
T Consensus 194 GA~--vIEKHfTldr~~~g~Dh~~Sl~p~el~~lv~~ir~~~~alG~~~K 241 (241)
T PF03102_consen 194 GAR--VIEKHFTLDRNLKGPDHKFSLEPDELKQLVRDIREVEKALGSGEK 241 (241)
T ss_dssp T-S--EEEEEB-S-TTSCSTTGCCCB-HHHHHHHHHHHHHHHHHCSHTT-
T ss_pred CCe--EEEEEEECCCCCCCCChhhcCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 998 999999999998 4999999999999999999999999998764
No 14
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-52 Score=364.97 Aligned_cols=188 Identities=33% Similarity=0.498 Sum_probs=182.0
Q ss_pred hhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 027740 2 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 2 ~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~ 81 (219)
++||++|++.++++|++++|+++|+++++...+++|++|||+|+|+|++||+++|+.+|||+||+|++.|++||+.|+||
T Consensus 95 e~gL~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEY 174 (286)
T COG2876 95 EEGLKLLKRAADETGLPVVTEVMDVRDVEAAAEYADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEY 174 (286)
T ss_pred HHHHHHHHHHHHHcCCeeEEEecCHHHHHHHHhhhhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCcEEEEeecCC-C-CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 82 VRLAGNPNVMVCERGTM-F-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 82 i~~~Gn~~i~L~~cgs~-~-~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
|.+.||++++||+||.. | .+.++.+|+.+++.+|+ +|+||++|+||+. |+|+++..++.||
T Consensus 175 I~s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLPVivDpSH~~----------------Grr~lv~pla~AA 238 (286)
T COG2876 175 ILSHGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLPVIVDPSHAT----------------GRRDLVEPLAKAA 238 (286)
T ss_pred HHhCCCCcEEEEecccccccccccceechHHHHHHHhhcCCCEEECCCCcc----------------cchhhHHHHHHHH
Confidence 99999999999999996 6 66778999999999999 9999999999995 9999999999999
Q ss_pred HHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 027740 159 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSK 205 (219)
Q Consensus 159 valGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg 205 (219)
+|+||||+|||+|++|++|+||.+||++|++|+++++.++.+..++|
T Consensus 239 ~AaGAdglmiEVHp~P~~AlsD~~Qql~~~~f~~l~~~~~~~~~~~~ 285 (286)
T COG2876 239 IAAGADGLMIEVHPDPEKALSDAKQQLTPEEFEELVKELRALADALG 285 (286)
T ss_pred HhccCCeeEEEecCCcccccCcccccCCHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999988765
No 15
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.2e-50 Score=349.15 Aligned_cols=205 Identities=56% Similarity=0.880 Sum_probs=198.9
Q ss_pred ChhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 027740 1 MVEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 1 ~~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e 80 (219)
|++||++|+++.+++|++++|++|++.++..+++.||++|||+|.++|++||.++|+||++|++|+|+++++.|+.+.++
T Consensus 73 Leeglki~~~vK~efgv~ilTDVHe~~q~~~vA~VvDilQiPAFLcRQTDLl~A~AkTg~~vNiKKgQFLaPwdMknvv~ 152 (279)
T COG2877 73 LEEGLKILQEVKEEFGVPILTDVHEPSQAQPVAEVVDVLQIPAFLCRQTDLLVAAAKTGAVVNVKKGQFLAPWDMKNIVE 152 (279)
T ss_pred HHHHHHHHHHHHHHcCCceeeccCChhhcchHHhhhhhhcchHHHhhhHHHHHHHHHhCCeEeeccccccChhHhhhHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH
Q 027740 81 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA 160 (219)
Q Consensus 81 ~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAva 160 (219)
++.+.||++++||+||++|+|++..+|+|+++.||++++||+||.+||+|+|++ .|..++|+|++++..++||+|
T Consensus 153 K~~~~gn~~v~lcERG~sFGYnnLV~DMrsl~iM~~~~~PViFDaTHSvQ~pgg-----~g~~SGG~refv~~LaRAa~A 227 (279)
T COG2877 153 KFLETGNNKVILCERGASFGYNNLVVDMRSLPIMKEFGAPVIFDATHSVQQPGG-----QGGSSGGRREFVPTLARAAVA 227 (279)
T ss_pred HHHhcCCCcEEEEeccCccCcchhHHHhhhhHHHHHcCCCeEEecccceeCCCC-----CCCCCCCcchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999975 599999999999999999999
Q ss_pred cCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCccc
Q 027740 161 VGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRM 210 (219)
Q Consensus 161 lGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~~~~~ 210 (219)
.|++|+|||.|++|++|++|++.++++++|+.+++.+.++.+...++..+
T Consensus 228 vGvaGlF~EtHpdP~~A~sDgp~mlpL~~le~ll~~l~~~d~l~k~~~~~ 277 (279)
T COG2877 228 VGVAGLFIETHPDPDNAKSDGPNMLPLDKLEALLEQLKAIDDLVKSFPEL 277 (279)
T ss_pred hccceEEEeccCCcccCCCCCccccCHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999988776544
No 16
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.3e-50 Score=359.05 Aligned_cols=181 Identities=16% Similarity=0.158 Sum_probs=174.3
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
...|+++|++.||.|+|||||..++++|.++ +++|||||++++|+|||+++|+++|||||||||+ +++|+..|++.++
T Consensus 92 ~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma-~~~ei~~av~~~r 170 (347)
T COG2089 92 HAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMA-TIEEIEEAVAILR 170 (347)
T ss_pred HHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccc-cHHHHHHHHHHHH
Confidence 5689999999999999999999999999999 9999999999999999999999999999999999 9999999999999
Q ss_pred HcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 027740 84 LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 162 (219)
Q Consensus 84 ~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalG 162 (219)
+.||++++|+||+|.||.|.+++||++|+.|++ |+++||+ ||||. | ..++++|+|+|
T Consensus 171 ~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGl-SDHT~----------------g-----~~a~l~AvALG 228 (347)
T COG2089 171 ENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGL-SDHTL----------------G-----ILAPLAAVALG 228 (347)
T ss_pred hcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCcccc-ccCcc----------------c-----hhHHHHHHHhc
Confidence 999999999999999999989999999999999 9999999 99996 6 68899999999
Q ss_pred CcEEEEeeecCCCCCC--CCCCCCCChHHHHHHHHHHHHHHHHhCCCccc
Q 027740 163 VDGVFMEVHDDPLNAP--VDGPTQWPLRNLEELLEELVAIAKVSKGKQRM 210 (219)
Q Consensus 163 A~GlvIEkH~t~d~a~--~D~~~sl~p~el~~lv~~ir~i~~~lg~~~~~ 210 (219)
|+ +||||||+||++ +||.+||+|++|++||+.+|+++.++|+.++.
T Consensus 229 A~--viEKHFtldk~~~GpD~~fSldP~efk~mv~~ir~~~~alG~~~k~ 276 (347)
T COG2089 229 AS--VIEKHFTLDKSREGPDHAFSLDPDEFKEMVDAIRQVEKALGDGEKE 276 (347)
T ss_pred cc--ceeeeeeecCCCCCCCcceecCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 97 999999999999 59999999999999999999999999985543
No 17
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=100.00 E-value=2.7e-41 Score=299.43 Aligned_cols=192 Identities=38% Similarity=0.557 Sum_probs=176.5
Q ss_pred hhHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 027740 2 VEGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 2 ~~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~ 81 (219)
+.||++|.++++++|++++||++|+.+++++++++||+|||+|+++|++||+++|++++||+||+|++.+++||..|+++
T Consensus 74 d~~L~~l~~v~~~~glpv~tEv~~~~~~~~~~d~vd~lqIgAr~~~n~~ll~~as~~~~pV~~K~g~~~ai~~~~~Aae~ 153 (270)
T PF00793_consen 74 DPGLDILSEVKEGLGLPVATEVLDPEQAEYVADLVDWLQIGARLMENQDLLEAASGTGKPVGFKNGTFAAIDEWLAAAEK 153 (270)
T ss_dssp HHHHHHHHHHHHHHT-EEEEEESSGGGHHHHHTTESEEEE-GGGTTCHHHHHHHHCTSSEEEEEE-TTSHGGGHHHHHHH
T ss_pred CccchhHHHHHhhhCCeeeEEecCcccHHHHHhcCcEEEECcchhcCHHHHHHhccCCCeEEeccCCccCHHHHHHHHhh
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC-CCcEEEEeecCCCCC--CCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 027740 82 VRLAG-NPNVMVCERGTMFGY--NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 157 (219)
Q Consensus 82 i~~~G-n~~i~L~~cgs~~~~--~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~a 157 (219)
+...| |+++++||||.++++ ++..+|+++++.+++ +++||++|+||+++.++ +|++.++...+++
T Consensus 154 ~~~~G~n~~~~l~erglr~g~~~n~~~~di~~~~~~~~~~~lpVivD~SH~~~~~~-----------~~~q~~V~~~a~a 222 (270)
T PF00793_consen 154 HLFLGINSGNILCERGLRGGYGPNYNVLDIAAVPIMKKKTHLPVIVDPSHANSRKD-----------GGRQELVPPLARA 222 (270)
T ss_dssp HHHTTECSSEEEEEEEEEESSSSSSEEHHTTHHHHHHHHTSSEEEEEHHHHTTTCG-----------GGGHCGHHHHHHH
T ss_pred hhhhcCCCCCeeeeeeeeccccccccchhHHHHHHHHHhcCCCEEECchhhhcccc-----------CCchhhHHHHHHH
Confidence 99999 899999999998544 556789999999998 88999999999986654 4667799999999
Q ss_pred HHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 158 AIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 158 AvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
+++.|++|+|||+|++|+++++|.+++++++++..++..+.++.+.+
T Consensus 223 aia~GidGlmiEsH~~p~~a~~d~~~~l~~~~~~~~~~~~~~~~~~v 269 (270)
T PF00793_consen 223 AIAAGIDGLMIESHPDPGKALSDGPQQLTYGQSITLLCILWEITEIV 269 (270)
T ss_dssp HHHHTESEEEEEEESSGGGTSSSGGGSEEGGGHHHHHHHHHHHHHHH
T ss_pred HHhhcCCEEEEeecCCcccCCCCCccCCCcchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998887754
No 18
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=99.96 E-value=1.1e-29 Score=231.04 Aligned_cols=165 Identities=20% Similarity=0.226 Sum_probs=144.6
Q ss_pred ChhHHHHHHHH---HHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 027740 1 MVEGLKILEKV---KIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 1 ~~~gl~~L~~~---~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~ 77 (219)
+++||++++++ ..++|+|+.||+.|+.++++++++++|++||+|+++|+.+++.++++++||.+|+|+++++++|.+
T Consensus 119 i~~GL~~~R~ll~~~~e~GlpvatE~ld~~~~~y~~dlvs~~~IGARt~esq~hr~~asg~~~PVg~Kng~~g~i~~~l~ 198 (349)
T PRK09261 119 INDGLRIARKLLLDINELGLPAATEFLDPITPQYIADLISWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNIKVAID 198 (349)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEecccccHHHHHhhcceeeeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHh
Confidence 37899999999 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH------------------HHHHHcCCCcEEEEeecC-CC-CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCc
Q 027740 78 SA------------------EKVRLAGNPNVMVCERGT-MF-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKK 136 (219)
Q Consensus 78 A~------------------e~i~~~Gn~~i~L~~cgs-~~-~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~ 136 (219)
|+ +++.+.||++.+||+||. ++ +|..++++..+.+..+. .+.||++||||.+
T Consensus 199 Ai~aa~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~~pNy~~~~i~~~~~~l~k~~l~~~v~VD~SH~n------- 271 (349)
T PRK09261 199 AIIAASAPHHFLGITKDGRSAIVSTTGNPDCHVILRGGNKGPNYDAESVAEAKERLEKAGLPPRIMIDCSHAN------- 271 (349)
T ss_pred HHHHHhCCceeeecCCCCcEEEEECCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCCCEEEECCCcc-------
Confidence 98 678999999999999998 45 67778888877777776 7899999999997
Q ss_pred cCCCCccCCCCcccHH-----HHHHHHHHcCCc---EEEEeeecCCCCCCCCCCCCCCh
Q 027740 137 LDGGGVASGGLRELIP-----CIARTAIAVGVD---GVFMEVHDDPLNAPVDGPTQWPL 187 (219)
Q Consensus 137 ~~~~~~~~~G~~~~~~-----~~~~aAvalGA~---GlvIEkH~t~d~a~~D~~~sl~p 187 (219)
+.+++.. ...+++++.|++ |+|||+| +.|+.|++++
T Consensus 272 ---------s~k~~~~Q~~V~~~v~~qi~~G~~~I~GvMiES~------l~~G~Q~~~~ 315 (349)
T PRK09261 272 ---------SGKDHKRQPEVARDVAAQIAAGNKAIIGVMIESH------LVEGNQDLPP 315 (349)
T ss_pred ---------cCcchhhhHHHHHHHHHHHHcCCccceEEEEEEe------cCcCCcCCCC
Confidence 2233323 334577999999 9999999 6667776654
No 19
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=99.94 E-value=4.3e-26 Score=207.08 Aligned_cols=179 Identities=21% Similarity=0.219 Sum_probs=148.7
Q ss_pred hhHHHHHHHHH---HhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 027740 2 VEGLKILEKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 2 ~~gl~~L~~~~---~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A 78 (219)
++||++++++. .++|+|+.||+.|+.+.+|+.++++|.+||||+++|+.+++.++++++||.+|+|++++++++..|
T Consensus 115 ~~GL~~~R~ll~~i~~~GlPvatE~ld~~~~~y~~Dlisw~aIGARt~esq~hRelaSgl~~PVgfKngt~g~i~~al~A 194 (344)
T TIGR00034 115 NHGLRIARKLLLDLVNLGLPIAGEFLDMISPQYLADLFSWGAIGARTTESQVHRELASGLSCPVGFKNGTDGNLQVAIDA 194 (344)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEecCcCcHHHHHHHHhhccccCccccCHHHHHHHhCCCCceEecCCCCCCHHHHHHH
Confidence 68999999998 999999999999999999999999999999999999988777778999999999999999999987
Q ss_pred H---H---------------HHHHcCCCcEEEEeecCCC-CCCCCCccchhHHHHHh-cCCC--EEEcCCCCCCCCCCCc
Q 027740 79 A---E---------------KVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMRE-ANCP--VVADVTHSLQQPAGKK 136 (219)
Q Consensus 79 ~---e---------------~i~~~Gn~~i~L~~cgs~~-~~~~~~~nl~~i~~lk~-~~~p--V~~ds~Hs~~~~~~~~ 136 (219)
+ + ++.+.||++++||+||... +|.. .|+..++.+.+ .++| |++||||.+
T Consensus 195 i~aA~~~H~fl~~~~~G~~~~i~t~GN~~~hlilRGg~~pNy~~--~di~~~~~~l~~~~lp~~vmVD~SH~n------- 265 (344)
T TIGR00034 195 IRAAAAPHYFLSVTKDGQMAIVQTSGNPDGHIILRGGKKPNYSA--ADVAAAKKQLEKAGLPPHLMIDFSHGN------- 265 (344)
T ss_pred HHHHhCCceeeecCCCCcEEEEECCCCCCEEEEecCCCCCCCCH--HHHHHHHHHHHHcCCCCeEEEeCCCcc-------
Confidence 5 4 3778999999999999874 3433 57888887766 8999 999999996
Q ss_pred cCCCCccCCCCcccHHHHHHH-----HHHcCCc---EEEEeeecCCCCCCCCCCC-----------CCChHHHHHHHHHH
Q 027740 137 LDGGGVASGGLRELIPCIART-----AIAVGVD---GVFMEVHDDPLNAPVDGPT-----------QWPLRNLEELLEEL 197 (219)
Q Consensus 137 ~~~~~~~~~G~~~~~~~~~~a-----AvalGA~---GlvIEkH~t~d~a~~D~~~-----------sl~p~el~~lv~~i 197 (219)
+.++++..+.++ .++.|++ |+|||+|+.+.+...+..+ ++.-++-+.+++.+
T Consensus 266 ---------s~k~~~~q~~va~~v~~qi~~G~~~I~GvMiES~l~~G~Q~~~~~~~l~yG~SITD~Ci~W~~T~~ll~~l 336 (344)
T TIGR00034 266 ---------SNKDHRRQPDVAEDVCEQIANGSKAIIGVMIESNLVEGNQSIPGGQPLKYGQSITDACIGWEDTEALLRQL 336 (344)
T ss_pred ---------cccchhhhHHHHHHHHHHHHcCCccceEEEEEecCCcCCCCCCCCCcCcCCCcCccccCChHHHHHHHHHH
Confidence 456666666666 6889997 9999999999988753322 34445555555544
Q ss_pred H
Q 027740 198 V 198 (219)
Q Consensus 198 r 198 (219)
.
T Consensus 337 a 337 (344)
T TIGR00034 337 A 337 (344)
T ss_pred H
Confidence 3
No 20
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=99.94 E-value=1.7e-26 Score=210.18 Aligned_cols=162 Identities=20% Similarity=0.237 Sum_probs=135.5
Q ss_pred hhHHHHHHHH---HHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 027740 2 VEGLKILEKV---KIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 2 ~~gl~~L~~~---~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A 78 (219)
++||+++++. ..++|+|+.||+.|+..++|+.++++|++||||+++|+.+++.++++++||.+|+|+++++++|.+|
T Consensus 121 ~~GL~~~R~ll~~~~e~Glp~atE~ld~~~~~y~~Dlvs~~aIGARt~esq~hre~aSgl~~PVgfKngt~g~i~~al~A 200 (353)
T PRK12755 121 EEGLRIARKLLLDLVELGLPLATEALDPISPQYLGDLISWGAIGARTTESQTHREMASGLSMPVGFKNGTDGSLKVAINA 200 (353)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHhhhhheeeccchhcCHHHHHHhcCCCCeeEecCCCCCCHHHHHHH
Confidence 6899997777 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH-------------H-----HHHcCCCcEEEEeecC-CC-CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCcc
Q 027740 79 AE-------------K-----VRLAGNPNVMVCERGT-MF-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKL 137 (219)
Q Consensus 79 ~e-------------~-----i~~~Gn~~i~L~~cgs-~~-~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~ 137 (219)
+. . +.+.||++.+||+||. ++ +|..++++..+....+. ...||++||||.+.
T Consensus 201 i~aa~~~H~fl~~~~~G~~~iv~t~GN~~~hliLRGg~~~pNy~~~~i~~a~~~l~k~~l~~~vmVD~SH~Ns------- 273 (353)
T PRK12755 201 IRAAAQPHRFLGINQEGQVALLETRGNPDGHVILRGGKKGPNYDAASVAACEAQLEKAGLRPRLMIDCSHANS------- 273 (353)
T ss_pred HHHHhCCCeeeeeCCCCcEEEEECCCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCCcEEecCCcccc-------
Confidence 73 3 7889999999999999 45 67777788666665555 67899999999971
Q ss_pred CCCCccCCCCcccHHHHHHHHHHcCC---cEEEEeeecCC
Q 027740 138 DGGGVASGGLRELIPCIARTAIAVGV---DGVFMEVHDDP 174 (219)
Q Consensus 138 ~~~~~~~~G~~~~~~~~~~aAvalGA---~GlvIEkH~t~ 174 (219)
++..-.+. .|.....+.++.|+ +|+|||+|...
T Consensus 274 ---~K~~~~Q~-~V~~~v~~qi~~G~~~I~GvMiES~l~~ 309 (353)
T PRK12755 274 ---GKDYRRQP-AVAEDVVAQIAAGNRSIIGVMIESHLEE 309 (353)
T ss_pred ---ccchhhhH-HHHHHHHHHHHcCCCceEEEEEEEeccc
Confidence 22222211 13344567788998 99999999543
No 21
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=99.86 E-value=1.6e-21 Score=177.24 Aligned_cols=165 Identities=13% Similarity=0.130 Sum_probs=133.8
Q ss_pred ChhHHHHHHHH---HHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 027740 1 MVEGLKILEKV---KIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 1 ~~~gl~~L~~~---~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~ 77 (219)
+++||+++++. ..++|+|+.||+.|+.+++|+.++++|.+||||+++|+.+++.++++++||.+|+|++++++...+
T Consensus 119 i~~GL~i~R~ll~~~~~~GlPvatE~ld~~~~qy~~Dlisw~aIGARt~esq~hrelaSgls~PVgfKngt~g~i~~Aid 198 (356)
T PRK12822 119 IEKGLRLARQLLLSINTLGLATATEFLDTTSFPYIADLICWGAIGARTTESQVHRQLASALPCPVGFKNGTDGNIRIAID 198 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEeecccccHHHHHHHHHhhhhccchhcCHHHHHHHhCCCCceEecCCCCCCHHHHHH
Confidence 36899999988 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH------------------HHHcCCCcEEEEeecCCC-CCCCCCccchhHHHHHhcCC--CEEEcCCCCCCCCCCCc
Q 027740 78 SAEK------------------VRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMREANC--PVVADVTHSLQQPAGKK 136 (219)
Q Consensus 78 A~e~------------------i~~~Gn~~i~L~~cgs~~-~~~~~~~nl~~i~~lk~~~~--pV~~ds~Hs~~~~~~~~ 136 (219)
|+.. +.+.||++.++..||... +|..++++ .+...|++.++ .|++||||.+.
T Consensus 199 Ai~aa~~pH~Fl~i~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~-~a~~~l~~~~l~~~vmVDcSH~NS------ 271 (356)
T PRK12822 199 AILAARSPHLVTVPGLTGCISTLLSDGNPHGHIILRGGREPNYGLSDVT-KASKLLHDEGLNHRLIIDCSHGNS------ 271 (356)
T ss_pred HHHHHcCCCeEEecCCCCcEEEEEcCCCCCceEEEeCCCCCCCCHHHHH-HHHHHHHHCCCCCcEEEECCCccC------
Confidence 9873 567899999999999874 56555554 55666776555 38999999972
Q ss_pred cCCCCccCCCCcccHHHHHHHHHHcC---CcEEEEeeecCCCCC
Q 027740 137 LDGGGVASGGLRELIPCIARTAIAVG---VDGVFMEVHDDPLNA 177 (219)
Q Consensus 137 ~~~~~~~~~G~~~~~~~~~~aAvalG---A~GlvIEkH~t~d~a 177 (219)
+|.+.-+..++..++.. ++.| +.|+|||+|...-+.
T Consensus 272 ----~K~~~~Q~~V~~~v~~q-~~~g~~~I~GvMiES~L~~G~Q 310 (356)
T PRK12822 272 ----QKVAKNQISVARELCDQ-LKEGEGAIAGVMVESFLQGGSQ 310 (356)
T ss_pred ----CCCHHHHHHHHHHHHHH-HHCCCCeEEEEEEeecccccCC
Confidence 34434433344443322 3344 889999999876544
No 22
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=99.80 E-value=3e-19 Score=162.24 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=130.7
Q ss_pred hhHHHHHHHHH---HhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 027740 2 VEGLKILEKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 2 ~~gl~~L~~~~---~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A 78 (219)
++||+++++.. .++|+|+.||+.|+...+|+.+++.|-+||||+++|+.+++.++.+++||.+|+|++++++.+.+|
T Consensus 119 ~~GL~~~R~ll~~i~~~GlP~atE~ld~~~~qY~~DliSwgaIGARt~esq~hre~ASgls~PVgfKN~t~g~i~~aidA 198 (348)
T PRK12756 119 NHGLELARKLLLQINELGLPTATEFLDMVTGQYIADLISWGAIGARTTESQIHREMASALSCPVGFKNGTDGNTRIAIDA 198 (348)
T ss_pred HHHHHHHHHHHHHHHHcCCceeehhcccccHHHHHHHHhhhhhccccccCHHHHHHHhcCCCceEecCCCCCCHHHHHHH
Confidence 57888877766 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH------------------HHHcCCCcEEEEeecCCC-CCCCCCccchhHHHHHhcCC--CEEEcCCCCCCCCCCCcc
Q 027740 79 AEK------------------VRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMREANC--PVVADVTHSLQQPAGKKL 137 (219)
Q Consensus 79 ~e~------------------i~~~Gn~~i~L~~cgs~~-~~~~~~~nl~~i~~lk~~~~--pV~~ds~Hs~~~~~~~~~ 137 (219)
+.. +.+.||++.++..||... +|+.+.+. .+...|++.++ .|++||||.+.
T Consensus 199 i~aa~~~H~Fl~~~~~G~~aiv~T~GN~~~HvILRGg~~PNY~~~~v~-~a~~~l~~~~l~~~imVDcSH~NS------- 270 (348)
T PRK12756 199 IRAARASHMFLSPDKDGQMTIYQTSGNPYGHIIMRGGKKPNYHAEDIA-AACDTLREFDLPEHLVVDFSHGNC------- 270 (348)
T ss_pred HHHHhCCCeeEeeCCCCcEEEEEcCCCCCeEEEeeCCCCCCCCHHHHH-HHHHHHHHCCCCCcEEEECCCccc-------
Confidence 884 567899999999999874 56655554 55666776554 48999999972
Q ss_pred CCCCccCCCCcccHHHHHHHHHHc---CCcEEEEeeecCCCCC
Q 027740 138 DGGGVASGGLRELIPCIARTAIAV---GVDGVFMEVHDDPLNA 177 (219)
Q Consensus 138 ~~~~~~~~G~~~~~~~~~~aAval---GA~GlvIEkH~t~d~a 177 (219)
+|.+.-+..++..++.. ++. .+.|+|||+|...-+.
T Consensus 271 ---~K~~~~Q~~V~~~v~~q-i~~g~~~I~GvMiES~L~~G~Q 309 (348)
T PRK12756 271 ---QKQHRRQLDVAEDICQQ-IRNGSTAIAGIMAESFLREGTQ 309 (348)
T ss_pred ---CCCHHHHHHHHHHHHHH-HHcCCCeEEEEEEeecccccCC
Confidence 33333333334333322 233 4789999999765544
No 23
>COG0722 AroG 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=99.51 E-value=4.2e-14 Score=127.18 Aligned_cols=162 Identities=21% Similarity=0.237 Sum_probs=125.7
Q ss_pred hhHHHHHHHHH---HhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 027740 2 VEGLKILEKVK---IAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 2 ~~gl~~L~~~~---~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A 78 (219)
.+||++-++.- .++|+|..||..|+.+.+|+++++.|.-||+|...++-..+.++.++.||.+|+|..+++.-..+|
T Consensus 120 ~~GL~~aR~Ll~~v~e~Glp~AtE~Ld~ispqy~aDLiSwgAIGARTtESQ~HRe~ASGLs~PvGFKNgTdGnl~vAidA 199 (351)
T COG0722 120 NKGLRIARKLLLDVNELGLPTATEFLDPISPQYLADLISWGAIGARTTESQIHRELASGLSCPVGFKNGTDGNLKVAIDA 199 (351)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHhccCcHHHHHHHHHHhhccccchhhHHHHHHhhccCCCccccCCCCccHHHHHHH
Confidence 46777666554 789999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHH------------------HHHcCCCcEEEEeecCC--CCCCCCCccchhHHHHHhcCCC--EEEcCCCCCCCCCCCc
Q 027740 79 AEK------------------VRLAGNPNVMVCERGTM--FGYNDLIVDPRNLEWMREANCP--VVADVTHSLQQPAGKK 136 (219)
Q Consensus 79 ~e~------------------i~~~Gn~~i~L~~cgs~--~~~~~~~~nl~~i~~lk~~~~p--V~~ds~Hs~~~~~~~~ 136 (219)
+.. +...||++-++..||.. .+|+...+. .+...|++++++ +++|+||.+.
T Consensus 200 i~AA~~~H~Fl~~~k~G~~aiv~T~GNp~~HvILRGG~~~PNYda~~v~-~~~~~l~~~gl~~~lmID~SH~NS------ 272 (351)
T COG0722 200 IRAAAHPHHFLSVTKDGQVAIVETSGNPDGHVILRGGKKGPNYDAASVA-AACEQLEKAGLPPRLMIDCSHANS------ 272 (351)
T ss_pred HHHhhCCceeeecCCCCceEEEEccCCCCceEEecCCCCCCCCCHHHHH-HHHHHHHHcCCCCeEEEeccCCcc------
Confidence 874 45679999999999984 466654443 556677777764 8889999972
Q ss_pred cCCCCccCCCCcccHHHHHHHHHHcC---CcEEEEeeecCCC
Q 027740 137 LDGGGVASGGLRELIPCIARTAIAVG---VDGVFMEVHDDPL 175 (219)
Q Consensus 137 ~~~~~~~~~G~~~~~~~~~~aAvalG---A~GlvIEkH~t~d 175 (219)
+|+..-+..++..++ .=++.| +.|+|||+|..--
T Consensus 273 ----~K~~~~Q~~V~~~v~-~Qi~~G~~~I~GvMiES~L~eG 309 (351)
T COG0722 273 ----GKDYRRQPKVARDVC-QQIAAGERAIRGVMIESHLVEG 309 (351)
T ss_pred ----ccChhhhHHHHHHHH-HHHhcCCceeEEEEehhhhhhc
Confidence 344333333333322 224445 6799999996543
No 24
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.61 E-value=0.0025 Score=54.47 Aligned_cols=144 Identities=15% Similarity=0.163 Sum_probs=98.3
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-CC-eEEEeCC----C-------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-GK-IINIKKG----Q------- 68 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-gk-PVilstG----~------- 68 (219)
+..+++.++..++++.. -+.++++++.+.+. +|.+-||+..+.|.++++++.+. ++ +|+++-. .
T Consensus 62 ~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~ 141 (234)
T cd04732 62 LELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWL 141 (234)
T ss_pred HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCe
Confidence 56778888888888887 78899999988877 99999999999999988888775 55 6666621 0
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCC
Q 027740 69 FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGL 147 (219)
Q Consensus 69 ~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~ 147 (219)
..+..+....++.+...|...+++.++... ++. .-.|+..+..+++ .++||.+.. |.
T Consensus 142 ~~~~~~~~~~~~~~~~~ga~~iii~~~~~~-g~~-~g~~~~~i~~i~~~~~ipvi~~G--------------------Gi 199 (234)
T cd04732 142 ETSEVSLEELAKRFEELGVKAIIYTDISRD-GTL-SGPNFELYKELAAATGIPVIASG--------------------GV 199 (234)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEEeecCC-Ccc-CCCCHHHHHHHHHhcCCCEEEec--------------------CC
Confidence 001223334455566778887877666432 111 1257888888888 789998732 22
Q ss_pred cccHHHHHHHHHHcCCcEEEEeeec
Q 027740 148 RELIPCIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 148 ~~~~~~~~~aAvalGA~GlvIEkH~ 172 (219)
+. ..-...+...||+|+++=+-+
T Consensus 200 ~~--~~di~~~~~~Ga~gv~vg~~~ 222 (234)
T cd04732 200 SS--LDDIKALKELGVAGVIVGKAL 222 (234)
T ss_pred CC--HHHHHHHHHCCCCEEEEeHHH
Confidence 21 222345566799999986543
No 25
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.09 E-value=0.023 Score=48.58 Aligned_cols=143 Identities=17% Similarity=0.224 Sum_probs=95.6
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-C-CeEEEe----------CCCC
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-G-KIINIK----------KGQF 69 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-g-kPVils----------tG~~ 69 (219)
+..+++.++..++++.. -+.+.++++.+.+. ++.+-+|+..+.|.+++.++++. | .+|+++ .|-.
T Consensus 61 ~~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~ 140 (230)
T TIGR00007 61 LPVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWL 140 (230)
T ss_pred HHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCc
Confidence 46788888888988888 67788899988888 99999999999998888887774 4 556653 2211
Q ss_pred C-CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCC
Q 027740 70 C-ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGL 147 (219)
Q Consensus 70 ~-t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~ 147 (219)
- +..+....++.+.+.|...+++..+... +.. ...|+..+..+++ .+.||.+.. |.
T Consensus 141 ~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~-g~~-~g~~~~~i~~i~~~~~ipvia~G--------------------Gi 198 (230)
T TIGR00007 141 EKSEVSLEELAKRLEELGLEGIIYTDISRD-GTL-SGPNFELTKELVKAVNVPVIASG--------------------GV 198 (230)
T ss_pred ccCCCCHHHHHHHHHhCCCCEEEEEeecCC-CCc-CCCCHHHHHHHHHhCCCCEEEeC--------------------CC
Confidence 0 1112233445566778877777655433 111 1357888888887 789998732 22
Q ss_pred cccHHHHHHHHHHcCCcEEEEeee
Q 027740 148 RELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 148 ~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
+.. ..+ ..+...||+|++|=+.
T Consensus 199 ~~~-~di-~~~~~~Gadgv~ig~a 220 (230)
T TIGR00007 199 SSI-DDL-IALKKLGVYGVIVGKA 220 (230)
T ss_pred CCH-HHH-HHHHHCCCCEEEEeHH
Confidence 221 222 3455799999998554
No 26
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.06 E-value=0.026 Score=48.56 Aligned_cols=144 Identities=15% Similarity=0.227 Sum_probs=96.4
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-C-CeEEEe----------CCCC
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-G-KIINIK----------KGQF 69 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-g-kPVils----------tG~~ 69 (219)
...+++.|+++++++.- -+.+.++++.+.+. ++..-||+..+.+.+++.++.+. + .-++++ +|..
T Consensus 65 ~~~i~~i~~~~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~ 144 (241)
T PRK13585 65 AEAIEKIIEAVGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWT 144 (241)
T ss_pred HHHHHHHHHHcCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCc
Confidence 56889999999998887 57888999998888 99999999999999988888776 3 223332 1211
Q ss_pred CCH-HHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCC
Q 027740 70 CAS-SVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGL 147 (219)
Q Consensus 70 ~t~-~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~ 147 (219)
-+. .+....++.+...|...+++..+... +.. .-.|+..+..+++ .++||.+. +|.
T Consensus 145 ~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~-g~~-~g~~~~~i~~i~~~~~iPvia~--------------------GGI 202 (241)
T PRK13585 145 EKTGYTPVEAAKRFEELGAGSILFTNVDVE-GLL-EGVNTEPVKELVDSVDIPVIAS--------------------GGV 202 (241)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEEeecCC-CCc-CCCCHHHHHHHHHhCCCCEEEe--------------------CCC
Confidence 011 12333444556778888887766332 111 2257788888887 78999873 122
Q ss_pred cccHHHHHHHHHHcCCcEEEEeeec
Q 027740 148 RELIPCIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 148 ~~~~~~~~~aAvalGA~GlvIEkH~ 172 (219)
+. ..-.......||+|+++=+-+
T Consensus 203 ~~--~~di~~~~~~Ga~gv~vgsa~ 225 (241)
T PRK13585 203 TT--LDDLRALKEAGAAGVVVGSAL 225 (241)
T ss_pred CC--HHHHHHHHHcCCCEEEEEHHH
Confidence 21 122334677899999886543
No 27
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.03 E-value=0.021 Score=49.73 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-CCeEEE----eCCC------CC
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-GKIINI----KKGQ------FC 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-gkPVil----stG~------~~ 70 (219)
+..+++.+++.++++.. =+.+.++++.+-+. ++..-+||..+.|.++++++++. +.-|++ +.|. .-
T Consensus 64 ~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~ 143 (241)
T PRK14024 64 RELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTR 143 (241)
T ss_pred HHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeee
Confidence 57888999999988876 78999999999888 99999999999999999998864 322333 2221 10
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEc
Q 027740 71 ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVAD 124 (219)
Q Consensus 71 t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~d 124 (219)
+..+....++.+.+.|...+++..+...-.+. -.|+..+..+++ .++||++.
T Consensus 144 ~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~--G~d~~~i~~i~~~~~ipvias 196 (241)
T PRK14024 144 DGGDLWEVLERLDSAGCSRYVVTDVTKDGTLT--GPNLELLREVCARTDAPVVAS 196 (241)
T ss_pred cCccHHHHHHHHHhcCCCEEEEEeecCCCCcc--CCCHHHHHHHHhhCCCCEEEe
Confidence 22344556666778898888777765431122 137888888888 78999884
No 28
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.02 E-value=0.023 Score=48.78 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-CCe-EEEe----CCC-------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-GKI-INIK----KGQ------- 68 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-gkP-Vils----tG~------- 68 (219)
+..+++.+++.++++.. .+.+.++++.+.+. ++.+-+|+..+.|.++++++.+. +.. ++++ .|.
T Consensus 63 ~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v 142 (232)
T TIGR03572 63 FELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKV 142 (232)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEE
Confidence 56788899999988777 88899998888777 99999999999999999998874 333 4433 220
Q ss_pred ------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCC
Q 027740 69 ------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGG 141 (219)
Q Consensus 69 ------~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~ 141 (219)
..+..+....++.+.+.|...+++...... +.. .-.|+..+..+++ .++||++....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~-g~~-~g~~~~~~~~i~~~~~ipvia~GGi-------------- 206 (232)
T TIGR03572 143 YSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRD-GTM-KGYDLELIKTVSDAVSIPVIALGGA-------------- 206 (232)
T ss_pred EECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCcc-CCc-CCCCHHHHHHHHhhCCCCEEEECCC--------------
Confidence 002233456667777888877776664322 111 2257888888887 78999873222
Q ss_pred ccCCCCcccHHHHHHHHHHcCCcEEEEee
Q 027740 142 VASGGLRELIPCIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 142 ~~~~G~~~~~~~~~~aAvalGA~GlvIEk 170 (219)
+. ...+.......||+|+++=+
T Consensus 207 ------~s-~~di~~~l~~~gadgV~vg~ 228 (232)
T TIGR03572 207 ------GS-LDDLVEVALEAGASAVAAAS 228 (232)
T ss_pred ------CC-HHHHHHHHHHcCCCEEEEeh
Confidence 11 13344446678999998854
No 29
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.93 E-value=0.0079 Score=45.63 Aligned_cols=77 Identities=21% Similarity=0.225 Sum_probs=65.9
Q ss_pred HHHHHHHHhcCCCeEeeeCCcccHHH-Hhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 6 KILEKVKIAYDIPIVTDVHETVQCEE-VGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~~d~~~~~~-l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
....+.++++|+++.++ ++. +.+- +|+.-|.+.+-.+.++..++.+.|++|++.+.++.+++|....++..+
T Consensus 37 ~~~~~~~~~~~~~~~~~------~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 37 ERAEAFAEKYGIPVYTD------LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp HHHHHHHHHTTSEEESS------HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchhH------HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHH
Confidence 34566788999996655 444 4444 999999999999999999999999999999999999999999999999
Q ss_pred HcCCC
Q 027740 84 LAGNP 88 (219)
Q Consensus 84 ~~Gn~ 88 (219)
+.|..
T Consensus 111 ~~~~~ 115 (120)
T PF01408_consen 111 EKGVK 115 (120)
T ss_dssp HHTSC
T ss_pred HhCCE
Confidence 88864
No 30
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.88 E-value=0.12 Score=46.01 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcc--c----HHHHhhh-cccccc----------CCCCCCCHH----HHHHHHhc-CCe
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETV--Q----CEEVGKV-ADIIQI----------PAFLCRQTD----LLVAAAKT-GKI 61 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~--~----~~~l~~~-vd~~kI----------~S~~~~n~~----LL~~~a~~-gkP 61 (219)
-++.+.+..++.+.+++..++-.. + +..+.+. +|++-| |+....+.. +++++-+. ++|
T Consensus 77 ~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~P 156 (296)
T cd04740 77 FLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVP 156 (296)
T ss_pred HHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCC
Confidence 345555655667899999886532 2 1223334 566555 233334444 45555554 899
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC------------------C-CCCCCCccchhHHHHHh-cCCCE
Q 027740 62 INIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM------------------F-GYNDLIVDPRNLEWMRE-ANCPV 121 (219)
Q Consensus 62 VilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~------------------~-~~~~~~~nl~~i~~lk~-~~~pV 121 (219)
|.+|-+. +.+|+...++.+.+.|..-+.+..+... | +.......++.+..+++ .++||
T Consensus 157 v~vKl~~--~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipi 234 (296)
T cd04740 157 VIVKLTP--NVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPI 234 (296)
T ss_pred EEEEeCC--CchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCE
Confidence 9999764 5678888888888889876766543211 0 11111235567777777 78999
Q ss_pred EEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 027740 122 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIA 201 (219)
Q Consensus 122 ~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~ 201 (219)
+....-. . ..-+..++..|||+++|=+-+ -.+|.-++++.+.+.+.-
T Consensus 235 i~~GGI~--------------------~--~~da~~~l~~GAd~V~igra~-----------l~~p~~~~~i~~~l~~~~ 281 (296)
T cd04740 235 IGVGGIA--------------------S--GEDALEFLMAGASAVQVGTAN-----------FVDPEAFKEIIEGLEAYL 281 (296)
T ss_pred EEECCCC--------------------C--HHHHHHHHHcCCCEEEEchhh-----------hcChHHHHHHHHHHHHHH
Confidence 8742211 1 345667788999977664331 125677888887777655
Q ss_pred HHhC
Q 027740 202 KVSK 205 (219)
Q Consensus 202 ~~lg 205 (219)
+..|
T Consensus 282 ~~~g 285 (296)
T cd04740 282 DEEG 285 (296)
T ss_pred HHcC
Confidence 5444
No 31
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=96.87 E-value=0.045 Score=46.73 Aligned_cols=139 Identities=18% Similarity=0.182 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-CCeEEEe----------CCC--
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-GKIINIK----------KGQ-- 68 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-gkPVils----------tG~-- 68 (219)
+..+++.+++.++|+.. =+-+.++++.+.+. ++..-+|+..+.+.++++++.+. +..++++ .|-
T Consensus 63 ~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~ 142 (233)
T PRK00748 63 LELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLE 142 (233)
T ss_pred HHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCee
Confidence 56788888889999877 67788888888887 99999999999999888888775 2223332 111
Q ss_pred --CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCC
Q 027740 69 --FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASG 145 (219)
Q Consensus 69 --~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~ 145 (219)
..++.| .++.+...|...+++..+... +... -.|+..+..+++ .++||++...-.
T Consensus 143 ~~~~~~~e---~~~~~~~~g~~~ii~~~~~~~-g~~~-G~d~~~i~~l~~~~~ipvia~GGi~----------------- 200 (233)
T PRK00748 143 TSGVTAED---LAKRFEDAGVKAIIYTDISRD-GTLS-GPNVEATRELAAAVPIPVIASGGVS----------------- 200 (233)
T ss_pred cCCCCHHH---HHHHHHhcCCCEEEEeeecCc-CCcC-CCCHHHHHHHHHhCCCCEEEeCCCC-----------------
Confidence 223344 444555667766655555432 1111 258888888888 789998732221
Q ss_pred CCcccHHHHHHHHHHcC-CcEEEEee
Q 027740 146 GLRELIPCIARTAIAVG-VDGVFMEV 170 (219)
Q Consensus 146 G~~~~~~~~~~aAvalG-A~GlvIEk 170 (219)
. ..-.......| |+|+++=+
T Consensus 201 ~-----~~di~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 201 S-----LDDIKALKGLGAVEGVIVGR 221 (233)
T ss_pred C-----HHHHHHHHHcCCccEEEEEH
Confidence 1 22244566677 99998854
No 32
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=96.81 E-value=0.018 Score=52.12 Aligned_cols=139 Identities=11% Similarity=0.067 Sum_probs=96.3
Q ss_pred HHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 027740 6 KILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRL 84 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~ 84 (219)
..|++.-+..+.-++-.+||.-+...+++. .+.+.++|+-+.+ +..|.| ..|.. |++|+...++.|..
T Consensus 7 ~~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~-------~~lG~P---D~g~l-~~~e~~~~~~~I~~ 75 (292)
T PRK11320 7 ARFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAA-------ASLGLP---DLGIT-TLDDVLIDVRRITD 75 (292)
T ss_pred HHHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHh-------HhcCCC---CCCCC-CHHHHHHHHHHHHh
Confidence 356777676778888899999999988888 8888888875542 345777 44654 88888888776621
Q ss_pred cCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCc
Q 027740 85 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 164 (219)
Q Consensus 85 ~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~ 164 (219)
..++||.+|.|..- |...-+....+.-..+||.
T Consensus 76 -------------------------------~~~iPviaD~d~Gy----------------G~~~~v~r~V~~~~~aGaa 108 (292)
T PRK11320 76 -------------------------------ACDLPLLVDIDTGF----------------GGAFNIARTVKSMIKAGAA 108 (292)
T ss_pred -------------------------------ccCCCEEEECCCCC----------------CCHHHHHHHHHHHHHcCCe
Confidence 14689999999874 3333345556777999999
Q ss_pred EEEEeeecCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhC
Q 027740 165 GVFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSK 205 (219)
Q Consensus 165 GlvIEkH~t~d~a~-~D~~~sl~p~el~~lv~~ir~i~~~lg 205 (219)
|+.||-...|.+.- .+.+.-.+++ ++++.|+.+..+..
T Consensus 109 gi~IEDq~~pK~cg~~~~~~lv~~e---e~~~kI~Aa~~a~~ 147 (292)
T PRK11320 109 AVHIEDQVGAKRCGHRPNKEIVSQE---EMVDRIKAAVDART 147 (292)
T ss_pred EEEEecCCCccccCCCCCCcccCHH---HHHHHHHHHHHhcc
Confidence 99999988776653 2333334555 45556666555543
No 33
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=96.73 E-value=0.076 Score=45.54 Aligned_cols=148 Identities=17% Similarity=0.231 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHhcCC--CeEe-eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 027740 3 EGLKILEKVKIAYDI--PIVT-DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi--~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A 78 (219)
.+++.+++.+++++- .+-+ |+++.++++...+. .+++-.|. .+.++++++...+.|++.. . .|++|+..|
T Consensus 47 ~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~---~~~~v~~~~~~~~~~~~~G--~-~t~~E~~~A 120 (206)
T PRK09140 47 DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPN---TDPEVIRRAVALGMVVMPG--V-ATPTEAFAA 120 (206)
T ss_pred cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHHCCCcEEcc--c-CCHHHHHHH
Confidence 357788889999874 3333 89999999998888 88888876 4568888888889998887 3 399999888
Q ss_pred HHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 027740 79 AEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 155 (219)
Q Consensus 79 ~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~ 155 (219)
.+ .|.+.+.+ ||.+ .+.+..+..++. + ++|++. +||.. ..-.
T Consensus 121 ~~----~Gad~vk~------Fpa~--~~G~~~l~~l~~~~~~~ipvva--------------------iGGI~---~~n~ 165 (206)
T PRK09140 121 LR----AGAQALKL------FPAS--QLGPAGIKALRAVLPPDVPVFA--------------------VGGVT---PENL 165 (206)
T ss_pred HH----cCCCEEEE------CCCC--CCCHHHHHHHHhhcCCCCeEEE--------------------ECCCC---HHHH
Confidence 65 57765554 5443 356778888887 6 488865 13421 2223
Q ss_pred HHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 156 RTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 156 ~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
..-.+.||+|+.+=+-++.... +.+++++..+.+++
T Consensus 166 ~~~~~aGa~~vav~s~l~~~~~--------~~~~i~~~a~~~~~ 201 (206)
T PRK09140 166 APYLAAGAAGFGLGSALYRPGQ--------SAEEVAERARAFVA 201 (206)
T ss_pred HHHHHCCCeEEEEehHhccccc--------ChHHHHHHHHHHHH
Confidence 3557789998876555433111 23456666555543
No 34
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=96.71 E-value=0.074 Score=45.95 Aligned_cols=118 Identities=20% Similarity=0.243 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-C--C---eEEEeCC--------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-G--K---IINIKKG-------- 67 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-g--k---PVilstG-------- 67 (219)
++.+++.+++.++|++. -+.+.++++.+.+. ++...+|+..+.|..++..+.+. + + ++=++.+
T Consensus 60 ~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~ 139 (243)
T cd04731 60 LDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVY 139 (243)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEE
Confidence 56788888999999888 68899998888777 99999999999999988888763 2 2 1112211
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEc
Q 027740 68 ----QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVAD 124 (219)
Q Consensus 68 ----~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~d 124 (219)
...+..+...-++.+...|...+++..+... +.. .-.|+..+..+++ .++||++.
T Consensus 140 ~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~-g~~-~g~~~~~i~~i~~~~~~pvia~ 199 (243)
T cd04731 140 THGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRD-GTK-KGYDLELIRAVSSAVNIPVIAS 199 (243)
T ss_pred EcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCC-CCC-CCCCHHHHHHHHhhCCCCEEEe
Confidence 1112334444555667778876666554332 111 2247777888887 78999874
No 35
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=96.59 E-value=0.099 Score=44.58 Aligned_cols=138 Identities=18% Similarity=0.171 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCCeEe---eeCC---------cccHHHHhhh-ccccccCCCCC------CCHHHHHHHHhcC-CeEEE
Q 027740 5 LKILEKVKIAYDIPIVT---DVHE---------TVQCEEVGKV-ADIIQIPAFLC------RQTDLLVAAAKTG-KIINI 64 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t---t~~d---------~~~~~~l~~~-vd~~kI~S~~~------~n~~LL~~~a~~g-kPVil 64 (219)
+..+++..+..++|++. .-|+ .++++.+.+. ++++-+..... ...++++++.+.+ +|+++
T Consensus 49 ~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv 128 (219)
T cd04729 49 VEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMA 128 (219)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEE
Confidence 34556666667888863 2221 1256666666 77776655443 4567888888887 88887
Q ss_pred eCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC-CCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCc
Q 027740 65 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG-YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGV 142 (219)
Q Consensus 65 stG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~-~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~ 142 (219)
.. . |.+|...+. +.|..-+.+.++|.... ......++..+..+++ +++||+..+
T Consensus 129 ~v--~-t~~ea~~a~----~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~G----------------- 184 (219)
T cd04729 129 DI--S-TLEEALNAA----KLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEG----------------- 184 (219)
T ss_pred EC--C-CHHHHHHHH----HcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeC-----------------
Confidence 43 4 888875543 45765443334442210 1112246678888887 889998732
Q ss_pred cCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 143 ASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 143 ~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
|.+. ..-+..+.++||||+++=+-
T Consensus 185 ---GI~~--~~~~~~~l~~GadgV~vGsa 208 (219)
T cd04729 185 ---RINS--PEQAAKALELGADAVVVGSA 208 (219)
T ss_pred ---CCCC--HHHHHHHHHCCCCEEEEchH
Confidence 2211 34456778899999887544
No 36
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=96.54 E-value=0.17 Score=45.65 Aligned_cols=166 Identities=22% Similarity=0.281 Sum_probs=100.0
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-cccc-ccCCCCCCCHHHHHHHHhcCCeEEEe--CCCCCC---------
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADII-QIPAFLCRQTDLLVAAAKTGKIINIK--KGQFCA--------- 71 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~-kI~S~~~~n~~LL~~~a~~gkPVils--tG~~~t--------- 71 (219)
++.++...++.++++.-+-++++-++..-+. ++++ -|.+. +.-.+++.+++.+.|+++- +|...+
T Consensus 79 ~pvI~~l~~~~~~~ISIDT~~~~va~~AL~~GadiINDI~g~--~d~~~~~~~a~~~~~vVlmh~~g~p~~~~~~~~y~d 156 (282)
T PRK11613 79 IPVVEAIAQRFEVWISVDTSKPEVIRESAKAGAHIINDIRSL--SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDD 156 (282)
T ss_pred HHHHHHHHhcCCCeEEEECCCHHHHHHHHHcCCCEEEECCCC--CCHHHHHHHHHcCCCEEEEcCCCCCCccccCCCccc
Confidence 3455666667799998899999988887776 7775 33343 3556788889999999884 332212
Q ss_pred -----HHHHHHHHHHHHHcCCC-cEEEEeecCCCCCCCCCccch---hHHHHHhcCCCEEEcCC------CCCCCCCCCc
Q 027740 72 -----SSVMVNSAEKVRLAGNP-NVMVCERGTMFGYNDLIVDPR---NLEWMREANCPVVADVT------HSLQQPAGKK 136 (219)
Q Consensus 72 -----~~ei~~A~e~i~~~Gn~-~i~L~~cgs~~~~~~~~~nl~---~i~~lk~~~~pV~~ds~------Hs~~~~~~~~ 136 (219)
.+.+.+.++.+.+.|-+ +=+++.-|.-|+-. ..-|+. .+..++++++||.+-.| +..+
T Consensus 157 v~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~-~~~n~~ll~~l~~l~~lg~Pilvg~SRKsfig~~~~------ 229 (282)
T PRK11613 157 VFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKN-LSHNYQLLARLAEFHHFNLPLLVGMSRKSMIGQLLN------ 229 (282)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCC-HHHHHHHHHHHHHHHhCCCCEEEEecccHHHHhhcC------
Confidence 13456677778888865 34466777655222 123444 44455557899866333 1111
Q ss_pred cCCCCccCCCCcccH-HHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 027740 137 LDGGGVASGGLRELI-PCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIA 201 (219)
Q Consensus 137 ~~~~~~~~~G~~~~~-~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~ 201 (219)
. ....|..- ..++..|+..||+ +|=.| +..+.++.++-.+.++
T Consensus 230 -----~-~~~~r~~~T~a~~~~a~~~ga~--iiRvH--------------dV~~~~~a~~~~~~~~ 273 (282)
T PRK11613 230 -----V-GPSERLSGSLACAVIAAMQGAQ--IIRVH--------------DVKETVEAMRVVEATL 273 (282)
T ss_pred -----C-ChhhhhHHHHHHHHHHHHCCCC--EEEcC--------------CHHHHHHHHHHHHHHH
Confidence 0 11223221 1223356777998 99999 5555555555555444
No 37
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.50 E-value=0.098 Score=46.10 Aligned_cols=147 Identities=17% Similarity=0.187 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-C---CeEE--EeCC--------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-G---KIIN--IKKG-------- 67 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-g---kPVi--lstG-------- 67 (219)
++.+++.+++.++++.. -+.+.+++..+.+. ++.+-||+....|..+++++++. + .++- ++.|
T Consensus 63 ~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~ 142 (258)
T PRK01033 63 YELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVY 142 (258)
T ss_pred HHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEE
Confidence 67889999989998766 57788888887777 88999999999999999988763 1 2222 2233
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCc
Q 027740 68 ----QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGV 142 (219)
Q Consensus 68 ----~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~ 142 (219)
...+-.+....++.+.+.|...+++..+...=.+. -.|+..+..+++ .++||++..
T Consensus 143 ~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~--G~d~~~i~~~~~~~~ipvIasG----------------- 203 (258)
T PRK01033 143 THNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMK--GYDLELLKSFRNALKIPLIALG----------------- 203 (258)
T ss_pred EcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcC--CCCHHHHHHHHhhCCCCEEEeC-----------------
Confidence 01122223445556667788777665333210111 138888888888 889998832
Q ss_pred cCCCCcccHHHHHHHHH-HcCCcEEEEee--ecCCC
Q 027740 143 ASGGLRELIPCIARTAI-AVGVDGVFMEV--HDDPL 175 (219)
Q Consensus 143 ~~~G~~~~~~~~~~aAv-alGA~GlvIEk--H~t~d 175 (219)
|.+.. ..+ ..+. ..|++|+++=+ ||+-|
T Consensus 204 ---Gv~s~-eD~-~~l~~~~GvdgVivg~a~~~~~~ 234 (258)
T PRK01033 204 ---GAGSL-DDI-VEAILNLGADAAAAGSLFVFKGV 234 (258)
T ss_pred ---CCCCH-HHH-HHHHHHCCCCEEEEcceeeeCcc
Confidence 21111 222 2334 68999999874 66533
No 38
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.49 E-value=0.099 Score=45.60 Aligned_cols=158 Identities=18% Similarity=0.186 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-C-CeEEEeCCC-----------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-G-KIINIKKGQ----------- 68 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-g-kPVilstG~----------- 68 (219)
+..+++++++.++|++. -+.+.++++.+.+. ++...||+..+.|..+++++.+. | --++++-..
T Consensus 63 ~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v 142 (253)
T PRK02083 63 LDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEV 142 (253)
T ss_pred HHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEE
Confidence 67788899999999888 78999999988878 99999999999999999998875 1 112332210
Q ss_pred ------CCCHHHHHHHHHHHHHcCCCcEEE--EeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCC
Q 027740 69 ------FCASSVMVNSAEKVRLAGNPNVMV--CERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDG 139 (219)
Q Consensus 69 ------~~t~~ei~~A~e~i~~~Gn~~i~L--~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~ 139 (219)
..+-......++.+...|...+++ +++..+. .-.|+..+..+++ .++||++...-+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~----~g~d~~~i~~~~~~~~ipvia~GGv~----------- 207 (253)
T PRK02083 143 YTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTK----NGYDLELTRAVSDAVNVPVIASGGAG----------- 207 (253)
T ss_pred EEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCC----CCcCHHHHHHHHhhCCCCEEEECCCC-----------
Confidence 001112333444556778887877 4452221 1237788888887 789998842222
Q ss_pred CCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHH
Q 027740 140 GGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLE 195 (219)
Q Consensus 140 ~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~ 195 (219)
. . ..+..+.-..|++|+++=+- .|.-.++++++++.++
T Consensus 208 ------s---~-~d~~~~~~~~G~~gvivg~a--------l~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 208 ------N---L-EHFVEAFTEGGADAALAASI--------FHFGEITIGELKAYLA 245 (253)
T ss_pred ------C---H-HHHHHHHHhCCccEEeEhHH--------HHcCCCCHHHHHHHHH
Confidence 1 0 23333223369999887432 2334677777766664
No 39
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.45 E-value=0.1 Score=45.77 Aligned_cols=159 Identities=17% Similarity=0.193 Sum_probs=105.9
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-C-CeEEEeC----C--------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-G-KIINIKK----G-------- 67 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-g-kPVilst----G-------- 67 (219)
+..+++.+++.++++.. -+.+.++++.+.+. ++.+.||+..++|.++++++.+. | .-|+++- |
T Consensus 63 ~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~ 142 (254)
T TIGR00735 63 IDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWY 142 (254)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccE
Confidence 56788899999998888 79999999998888 99999999999999999998763 2 1233322 2
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCC
Q 027740 68 -------QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDG 139 (219)
Q Consensus 68 -------~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~ 139 (219)
...+..+....++.+...|...+++ +....-++. .-.|+..+..+++ .++||++..
T Consensus 143 ~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iiv-t~i~~~g~~-~g~~~~~~~~i~~~~~ipvia~G-------------- 206 (254)
T TIGR00735 143 EVYIYGGRESTGLDAVEWAKEVEKLGAGEILL-TSMDKDGTK-SGYDLELTKAVSEAVKIPVIASG-------------- 206 (254)
T ss_pred EEEEeCCcccCCCCHHHHHHHHHHcCCCEEEE-eCcCcccCC-CCCCHHHHHHHHHhCCCCEEEeC--------------
Confidence 1112345566667777888876655 443332332 2357778888887 789998732
Q ss_pred CCccCCCCcccHHHHHHHHHHcC-CcEEEEeeecCCCCCCCCCCCCCChHHHHHHHH
Q 027740 140 GGVASGGLRELIPCIARTAIAVG-VDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLE 195 (219)
Q Consensus 140 ~~~~~~G~~~~~~~~~~aAvalG-A~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~ 195 (219)
|.+. ..-...+...| ++|+++=+- .|.-.++++++++.++
T Consensus 207 ------Gi~s--~~di~~~~~~g~~dgv~~g~a--------~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 207 ------GAGK--PEHFYEAFTKGKADAALAASV--------FHYREITIGEVKEYLA 247 (254)
T ss_pred ------CCCC--HHHHHHHHHcCCcceeeEhHH--------HhCCCCCHHHHHHHHH
Confidence 2221 23344566667 998766332 2333466777666655
No 40
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.39 E-value=0.12 Score=45.59 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=84.5
Q ss_pred HHHHHHHHHh-cCCCeEeeeCC--cccH----HHHhhh-ccccccC--CC-------CCCCHH----HHHHHHhc-CCeE
Q 027740 5 LKILEKVKIA-YDIPIVTDVHE--TVQC----EEVGKV-ADIIQIP--AF-------LCRQTD----LLVAAAKT-GKII 62 (219)
Q Consensus 5 l~~L~~~~~~-~Gi~~~tt~~d--~~~~----~~l~~~-vd~~kI~--S~-------~~~n~~----LL~~~a~~-gkPV 62 (219)
++.+.+..+. .+.+++..++- +++. +.+.+. +|++-|- +- ..++.. +++++.+. ++||
T Consensus 86 ~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv 165 (289)
T cd02810 86 LQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPL 165 (289)
T ss_pred HHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCE
Confidence 3445555454 58899988864 3332 233334 5555542 11 123333 45555543 8999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-------------------CCCCCCccchhHHHHHh-c--CCC
Q 027740 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-------------------GYNDLIVDPRNLEWMRE-A--NCP 120 (219)
Q Consensus 63 ilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-------------------~~~~~~~nl~~i~~lk~-~--~~p 120 (219)
++|-+...+.+|+...++.+.+.|..-+++..+.... +++....+++.+..+++ . ++|
T Consensus 166 ~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ip 245 (289)
T cd02810 166 LVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIP 245 (289)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCC
Confidence 9998888788899999999999998666554432210 00001124566777777 6 899
Q ss_pred EEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 121 V~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
|+... |... ..-+...+++||+++++
T Consensus 246 iia~G--------------------GI~~--~~da~~~l~~GAd~V~v 271 (289)
T cd02810 246 IIGVG--------------------GIDS--GEDVLEMLMAGASAVQV 271 (289)
T ss_pred EEEEC--------------------CCCC--HHHHHHHHHcCccHheE
Confidence 98731 2211 23455667789997665
No 41
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=96.38 E-value=0.29 Score=40.80 Aligned_cols=132 Identities=19% Similarity=0.187 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 82 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i 82 (219)
.++.+.+.|+.+|++++.. +.++.+.++ ++.+-+++.+.. ...++..-..++.+.+++. |.+|+..|.+
T Consensus 53 ~~~~~~~~~~~~~~~l~~~----~~~~~a~~~gad~vh~~~~~~~-~~~~~~~~~~~~~~g~~~~---t~~e~~~a~~-- 122 (212)
T PRK00043 53 LARALKELCRRYGVPLIVN----DRVDLALAVGADGVHLGQDDLP-VADARALLGPDAIIGLSTH---TLEEAAAALA-- 122 (212)
T ss_pred HHHHHHHHHHHhCCeEEEe----ChHHHHHHcCCCEEecCcccCC-HHHHHHHcCCCCEEEEeCC---CHHHHHHHhH--
Confidence 4666778888999998874 567777787 888888776432 2333444345667777775 7888877753
Q ss_pred HHcCCCcEEEEeecCCCCCCC-----CCccchhHHHHHh-cC-CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 027740 83 RLAGNPNVMVCERGTMFGYND-----LIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 155 (219)
Q Consensus 83 ~~~Gn~~i~L~~cgs~~~~~~-----~~~nl~~i~~lk~-~~-~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~ 155 (219)
.|.. ++.+.. .|+... ....+..+..+++ ++ +||..+ ||.. ..-.
T Consensus 123 --~gaD-~v~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~--------------------GGI~---~~~i 174 (212)
T PRK00043 123 --AGAD-YVGVGP--IFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAI--------------------GGIT---PENA 174 (212)
T ss_pred --cCCC-EEEECC--ccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEE--------------------CCcC---HHHH
Confidence 4554 444431 122110 1123677888877 66 999874 2322 2345
Q ss_pred HHHHHcCCcEEEEeeecC
Q 027740 156 RTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 156 ~aAvalGA~GlvIEkH~t 173 (219)
..+.+.||+|+++-.-+.
T Consensus 175 ~~~~~~Ga~gv~~gs~i~ 192 (212)
T PRK00043 175 PEVLEAGADGVAVVSAIT 192 (212)
T ss_pred HHHHHcCCCEEEEeHHhh
Confidence 578899999999887754
No 42
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.30 E-value=0.25 Score=44.10 Aligned_cols=166 Identities=15% Similarity=0.125 Sum_probs=98.9
Q ss_pred HHHHHHHHHhcCCCeEeeeCCc--ccHHH----Hhhh--cccccc----------CCCCCCCHH----HHHHHHhc-CCe
Q 027740 5 LKILEKVKIAYDIPIVTDVHET--VQCEE----VGKV--ADIIQI----------PAFLCRQTD----LLVAAAKT-GKI 61 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~--~~~~~----l~~~--vd~~kI----------~S~~~~n~~----LL~~~a~~-gkP 61 (219)
++.+.+..++++++++.++.-. ++... +.+. +|.+.| |+....+.. +++++-+. ++|
T Consensus 80 ~~~~~~~~~~~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~p 159 (301)
T PRK07259 80 IEEELPWLEEFDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVP 159 (301)
T ss_pred HHHHHHHHhccCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCC
Confidence 3344444556789999988643 32222 2233 566655 333444444 44444443 899
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-------------------CCCCCCccchhHHHHHh-cCCCE
Q 027740 62 INIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-------------------GYNDLIVDPRNLEWMRE-ANCPV 121 (219)
Q Consensus 62 VilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-------------------~~~~~~~nl~~i~~lk~-~~~pV 121 (219)
|.+|-+. +.+|+...++.+.+.|..-+++..+...+ +.......++.+..+++ .++||
T Consensus 160 v~vKl~~--~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipv 237 (301)
T PRK07259 160 VIVKLTP--NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPI 237 (301)
T ss_pred EEEEcCC--CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCE
Confidence 9999874 56788888888888898767665432211 00011235677777777 78999
Q ss_pred EEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 027740 122 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIA 201 (219)
Q Consensus 122 ~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~ 201 (219)
+....=. . ..-+...++.|||+++|=+- .-.+|.-++++.+.+...-
T Consensus 238 i~~GGI~----------------~------~~da~~~l~aGAd~V~igr~-----------ll~~P~~~~~i~~~l~~~~ 284 (301)
T PRK07259 238 IGMGGIS----------------S------AEDAIEFIMAGASAVQVGTA-----------NFYDPYAFPKIIEGLEAYL 284 (301)
T ss_pred EEECCCC----------------C------HHHHHHHHHcCCCceeEcHH-----------HhcCcHHHHHHHHHHHHHH
Confidence 8742211 1 34455667889996665332 1115777888887776655
Q ss_pred HHhC
Q 027740 202 KVSK 205 (219)
Q Consensus 202 ~~lg 205 (219)
...|
T Consensus 285 ~~~g 288 (301)
T PRK07259 285 DKYG 288 (301)
T ss_pred HHcC
Confidence 5444
No 43
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=96.24 E-value=0.26 Score=41.27 Aligned_cols=129 Identities=19% Similarity=0.214 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcC-CCeEe-eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 027740 4 GLKILEKVKIAYD-IPIVT-DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 4 gl~~L~~~~~~~G-i~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e 80 (219)
.++.+++++++++ +.+-. ++++.++++.+.+. .+++-.|.. +.++++++-+.+.|+++ |.+ |++|+..|.+
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~---~~~~~~~~~~~~~~~i~--gv~-t~~e~~~A~~ 115 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGL---DPEVVKAANRAGIPLLP--GVA-TPTEIMQALE 115 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCC---CHHHHHHHHHcCCcEEC--CcC-CHHHHHHHHH
Confidence 4567777777776 44443 88999999999888 888876654 57888888888999887 888 9999988864
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 81 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 81 ~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
.|..-+-+ ||.+. .-...+..++. + ++|++. . ||.. ..-....
T Consensus 116 ----~Gad~i~~------~p~~~--~g~~~~~~l~~~~~~~p~~a--~------------------GGI~---~~n~~~~ 160 (190)
T cd00452 116 ----LGADIVKL------FPAEA--VGPAYIKALKGPFPQVRFMP--T------------------GGVS---LDNAAEW 160 (190)
T ss_pred ----CCCCEEEE------cCCcc--cCHHHHHHHHhhCCCCeEEE--e------------------CCCC---HHHHHHH
Confidence 57755544 33332 24566777776 5 688865 1 2321 2334466
Q ss_pred HHcCCcEEEEeeecC
Q 027740 159 IAVGVDGVFMEVHDD 173 (219)
Q Consensus 159 valGA~GlvIEkH~t 173 (219)
.+.|++|+.+=.=++
T Consensus 161 ~~~G~~~v~v~s~i~ 175 (190)
T cd00452 161 LAAGVVAVGGGSLLP 175 (190)
T ss_pred HHCCCEEEEEchhcc
Confidence 788999877654443
No 44
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.23 E-value=0.066 Score=48.74 Aligned_cols=111 Identities=20% Similarity=0.193 Sum_probs=72.4
Q ss_pred CCCCCCCHHHHHHHHh-----c--CCeEEEeCCCCC-CHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCccchhHH
Q 027740 42 PAFLCRQTDLLVAAAK-----T--GKIINIKKGQFC-ASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLE 112 (219)
Q Consensus 42 ~S~~~~n~~LL~~~a~-----~--gkPVilstG~~~-t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~~~~nl~~i~ 112 (219)
||..+.+.+++.++-+ + ++||-+|...+. +.++....++.+.+.|..-+ -+|..+.. +|....+|...+.
T Consensus 109 Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i-~Vh~Rt~~~~y~g~~~~~~~i~ 187 (312)
T PRK10550 109 GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATEL-VVHGRTKEDGYRAEHINWQAIG 187 (312)
T ss_pred chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEE-EECCCCCccCCCCCcccHHHHH
Confidence 4457788777666532 3 489999964432 45678888888888887555 55665542 3432235888899
Q ss_pred HHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH-HcCCcEEEEeeecCCC
Q 027740 113 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI-AVGVDGVFMEVHDDPL 175 (219)
Q Consensus 113 ~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAv-alGA~GlvIEkH~t~d 175 (219)
.+|+ .++||+++.+=. . +.-+.... .-|+||+||=+-+--+
T Consensus 188 ~ik~~~~iPVi~nGdI~-----------------t-----~~da~~~l~~~g~DgVmiGRg~l~n 230 (312)
T PRK10550 188 EIRQRLTIPVIANGEIW-----------------D-----WQSAQQCMAITGCDAVMIGRGALNI 230 (312)
T ss_pred HHHhhcCCcEEEeCCcC-----------------C-----HHHHHHHHhccCCCEEEEcHHhHhC
Confidence 9998 889999864432 1 23344444 4689999987654333
No 45
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=96.22 E-value=0.064 Score=48.42 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=91.7
Q ss_pred HHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 027740 7 ILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 85 (219)
Q Consensus 7 ~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~ 85 (219)
.|++.-++.+.-++-.+||.-+...+++. .+.+.++|.-+.. ..|.| ..|.- |++|+...+..|...
T Consensus 4 ~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~--------~lG~p---D~g~l-t~~e~~~~~~~I~~~ 71 (285)
T TIGR02317 4 AFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAA--------SLGLP---DLGIT-TLDEVAEDARRITRV 71 (285)
T ss_pred HHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH--------hCCCC---CCCCC-CHHHHHHHHHHHHhc
Confidence 45666666677778899999999888887 8888888765432 34666 34544 788887776655311
Q ss_pred CCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcE
Q 027740 86 GNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 165 (219)
Q Consensus 86 Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~G 165 (219)
.++||.+|.+..- |...-+....+.-..+|+.|
T Consensus 72 -------------------------------~~iPviaD~d~Gy----------------G~~~~v~~tv~~~~~aG~ag 104 (285)
T TIGR02317 72 -------------------------------TDLPLLVDADTGF----------------GEAFNVARTVREMEDAGAAA 104 (285)
T ss_pred -------------------------------cCCCEEEECCCCC----------------CCHHHHHHHHHHHHHcCCeE
Confidence 4689999998764 33333445566779999999
Q ss_pred EEEeeecCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhC
Q 027740 166 VFMEVHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKVSK 205 (219)
Q Consensus 166 lvIEkH~t~d~a~-~D~~~sl~p~el~~lv~~ir~i~~~lg 205 (219)
+.||-...|.+.- ..++.-.+++ ++++.|+.+..+..
T Consensus 105 i~IEDq~~pK~cgh~~g~~lv~~e---e~~~kI~Aa~~a~~ 142 (285)
T TIGR02317 105 VHIEDQVLPKRCGHLPGKELVSRE---EMVDKIAAAVDAKR 142 (285)
T ss_pred EEEecCCCccccCCCCCccccCHH---HHHHHHHHHHHhcc
Confidence 9999987776653 2333344544 55556666655554
No 46
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=96.21 E-value=0.081 Score=46.40 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=71.1
Q ss_pred cCCCCCCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh
Q 027740 41 IPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 116 (219)
Q Consensus 41 I~S~~~~n~~LL~~----~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~ 116 (219)
-|+..+++.+++.. +.+.++||.+|.-...+-.+....++.+.+.|..-|++ |+... +.+ ..|++.|..+++
T Consensus 112 ~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V-d~~~~-g~~--~a~~~~I~~i~~ 187 (231)
T TIGR00736 112 IGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV-DAMYP-GKP--YADMDLLKILSE 187 (231)
T ss_pred CchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE-eeCCC-CCc--hhhHHHHHHHHH
Confidence 46667888766544 44468999999987645556778888889999988877 54321 111 268999999998
Q ss_pred -c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEee
Q 027740 117 -A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 117 -~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEk 170 (219)
. ++||+.+-+=. . ..-++.....||+|++|=+
T Consensus 188 ~~~~ipIIgNGgI~-----------------s-----~eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 188 EFNDKIIIGNNSID-----------------D-----IESAKEMLKAGADFVSVAR 221 (231)
T ss_pred hcCCCcEEEECCcC-----------------C-----HHHHHHHHHhCCCeEEEcH
Confidence 6 49998753322 1 2334444557999998743
No 47
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=96.20 E-value=0.38 Score=42.87 Aligned_cols=167 Identities=15% Similarity=0.142 Sum_probs=96.9
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCc--ccHHHHhhh-------cccccc--C--------CCCCCCHHH----HHHHHh-cC
Q 027740 4 GLKILEKVKIAYDIPIVTDVHET--VQCEEVGKV-------ADIIQI--P--------AFLCRQTDL----LVAAAK-TG 59 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~--~~~~~l~~~-------vd~~kI--~--------S~~~~n~~L----L~~~a~-~g 59 (219)
-++.+.+..++++.+++..++-. +++..+++. +|++-| + +....+.++ ++++-+ ++
T Consensus 78 ~~~~~~~~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~ 157 (300)
T TIGR01037 78 FLEELKPVREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD 157 (300)
T ss_pred HHHHHHHHhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence 35566666788888999888543 332222221 222222 2 233445544 444443 58
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----------------CCC---CCCccchhHHHHHh-cCC
Q 027740 60 KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----------------GYN---DLIVDPRNLEWMRE-ANC 119 (219)
Q Consensus 60 kPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~----------------~~~---~~~~nl~~i~~lk~-~~~ 119 (219)
+||.+|... +.+|+...++.+.+.|..-+++..+...+ ++. ...+.++.+..+++ .++
T Consensus 158 ~pv~vKi~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~i 235 (300)
T TIGR01037 158 VPVFAKLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDI 235 (300)
T ss_pred CCEEEECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCC
Confidence 999999873 57888888888888898666553221100 000 01123466667777 789
Q ss_pred CEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 120 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 120 pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
||+....-. . ..-+...+..|||+++|=+-+ -.+|.-+.++.+.+++
T Consensus 236 pvi~~GGI~--------------------s--~~da~~~l~~GAd~V~igr~~-----------l~~p~~~~~i~~~l~~ 282 (300)
T TIGR01037 236 PIIGVGGIT--------------------S--FEDALEFLMAGASAVQVGTAV-----------YYRGFAFKKIIEGLIA 282 (300)
T ss_pred CEEEECCCC--------------------C--HHHHHHHHHcCCCceeecHHH-----------hcCchHHHHHHHHHHH
Confidence 998742221 1 344666778999987764432 1245677777777776
Q ss_pred HHHHhC
Q 027740 200 IAKVSK 205 (219)
Q Consensus 200 i~~~lg 205 (219)
.-+..|
T Consensus 283 ~~~~~g 288 (300)
T TIGR01037 283 FLKAEG 288 (300)
T ss_pred HHHHcC
Confidence 665555
No 48
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=96.13 E-value=0.092 Score=47.63 Aligned_cols=124 Identities=14% Similarity=0.058 Sum_probs=74.6
Q ss_pred CCCeEe-eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE
Q 027740 16 DIPIVT-DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC 93 (219)
Q Consensus 16 Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~ 93 (219)
|+-++. +++..+.++.+.+. ++++-++... ..++++++-+.|..|+...+ |+++.+.+. +.|..-| ++
T Consensus 66 gvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~--p~~~i~~lk~~g~~v~~~v~---s~~~a~~a~----~~GaD~I-vv 135 (307)
T TIGR03151 66 GVNIMLLSPFVDELVDLVIEEKVPVVTTGAGN--PGKYIPRLKENGVKVIPVVA---SVALAKRME----KAGADAV-IA 135 (307)
T ss_pred EEeeecCCCCHHHHHHHHHhCCCCEEEEcCCC--cHHHHHHHHHcCCEEEEEcC---CHHHHHHHH----HcCCCEE-EE
Confidence 343433 44555666766666 8877665432 34688888888998886443 777766554 3576544 44
Q ss_pred eecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 94 ERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 94 ~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
|..-.-++.....++..++.+++ .++||+....=. + ..-..++.++||+|+++=.-
T Consensus 136 ~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~--------------------~--~~~~~~al~~GA~gV~iGt~ 192 (307)
T TIGR03151 136 EGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIA--------------------D--GRGMAAAFALGAEAVQMGTR 192 (307)
T ss_pred ECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCC--------------------C--HHHHHHHHHcCCCEeecchH
Confidence 43211122111235777888877 789998742211 1 23355778899999988653
No 49
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.12 E-value=0.26 Score=44.29 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=80.0
Q ss_pred HHHHHHhc-CCCeEeeeCCc---ccHH----HHhhh-cccccc-------------CCCCCCCHHHH----HHHH-hcCC
Q 027740 8 LEKVKIAY-DIPIVTDVHET---VQCE----EVGKV-ADIIQI-------------PAFLCRQTDLL----VAAA-KTGK 60 (219)
Q Consensus 8 L~~~~~~~-Gi~~~tt~~d~---~~~~----~l~~~-vd~~kI-------------~S~~~~n~~LL----~~~a-~~gk 60 (219)
+.+..+.. +.+++..++-. ++.- .+++. +|++-| |+..+.+.+++ +++- .+++
T Consensus 90 ~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~ 169 (299)
T cd02940 90 IRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKI 169 (299)
T ss_pred HHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCC
Confidence 34444444 58888888554 2222 22222 444433 22333454444 4443 3579
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec--------------------CCC-CC---CCCCccchhHHHHHh
Q 027740 61 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG--------------------TMF-GY---NDLIVDPRNLEWMRE 116 (219)
Q Consensus 61 PVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cg--------------------s~~-~~---~~~~~nl~~i~~lk~ 116 (219)
||.+|-.. ..+++.+.++.+.+.|..-|++..+. +.+ +| ....+.++.+..+++
T Consensus 170 Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~ 247 (299)
T cd02940 170 PVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIAR 247 (299)
T ss_pred CeEEECCC--CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHH
Confidence 99999764 45678888888888898877754322 111 11 112234788888887
Q ss_pred -c--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEee
Q 027740 117 -A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 117 -~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEk 170 (219)
. ++||+.+..=. . ..-+.....+||++++|=+
T Consensus 248 ~~~~~ipIig~GGI~----------------~------~~da~~~l~aGA~~V~i~t 282 (299)
T cd02940 248 APEPGLPISGIGGIE----------------S------WEDAAEFLLLGASVVQVCT 282 (299)
T ss_pred hcCCCCcEEEECCCC----------------C------HHHHHHHHHcCCChheEce
Confidence 7 79998743321 1 2334566779999777643
No 50
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=96.12 E-value=0.33 Score=41.36 Aligned_cols=137 Identities=19% Similarity=0.252 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCCCeEee---------eC---CcccHHHHhhh-ccccccCCCC------CCCHHHHHHHHh-cCCeEEE
Q 027740 5 LKILEKVKIAYDIPIVTD---------VH---ETVQCEEVGKV-ADIIQIPAFL------CRQTDLLVAAAK-TGKIINI 64 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt---------~~---d~~~~~~l~~~-vd~~kI~S~~------~~n~~LL~~~a~-~gkPVil 64 (219)
+..+++..+..++||+-- +| +.++++.+.+. +|++-+.... -+..++++++-+ .+.|++.
T Consensus 45 ~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~ 124 (221)
T PRK01130 45 VEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA 124 (221)
T ss_pred HHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE
Confidence 456777777788888611 22 12356667676 8877765543 334678888888 7889886
Q ss_pred eCCCCCCHHHHHHHHHHHHHcCCCcEEEE-eecCCC-CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCC
Q 027740 65 KKGQFCASSVMVNSAEKVRLAGNPNVMVC-ERGTMF-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGG 141 (219)
Q Consensus 65 stG~~~t~~ei~~A~e~i~~~Gn~~i~L~-~cgs~~-~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~ 141 (219)
.. . |.+|+..+ ...|.. ++.+ .++..- .......++..+..+++ +++||+..
T Consensus 125 ~v--~-t~ee~~~a----~~~G~d-~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~----------------- 179 (221)
T PRK01130 125 DC--S-TLEEGLAA----QKLGFD-FIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAE----------------- 179 (221)
T ss_pred eC--C-CHHHHHHH----HHcCCC-EEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEE-----------------
Confidence 54 3 88887543 445754 3333 222211 11112345677888887 78999863
Q ss_pred ccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 142 VASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 142 ~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
+|.+. ..-+..+.++||+|++|=..
T Consensus 180 ---GGI~t--~~~~~~~l~~GadgV~iGsa 204 (221)
T PRK01130 180 ---GRINT--PEQAKKALELGAHAVVVGGA 204 (221)
T ss_pred ---CCCCC--HHHHHHHHHCCCCEEEEchH
Confidence 13211 23455678899999988654
No 51
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.11 E-value=0.041 Score=48.95 Aligned_cols=75 Identities=20% Similarity=0.122 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCCCeEeeeCCcccHHHHhh-h-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 6 KILEKVKIAYDIPIVTDVHETVQCEEVGK-V-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~-~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
..++++++++|++ ....+.+.+.+ - +|++-|++-+-.+.++..++-+.||+|++.+.++.|++|.+.-++..+
T Consensus 41 ~~a~~~a~~~~~~-----~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~ 115 (342)
T COG0673 41 ERAEAFAEEFGIA-----KAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELAR 115 (342)
T ss_pred HHHHHHHHHcCCC-----cccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHH
Confidence 4577888999998 33334555443 3 999999999999999999999999999999999999999998888766
Q ss_pred Hc
Q 027740 84 LA 85 (219)
Q Consensus 84 ~~ 85 (219)
+.
T Consensus 116 ~~ 117 (342)
T COG0673 116 KA 117 (342)
T ss_pred Hc
Confidence 65
No 52
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.02 E-value=0.61 Score=38.70 Aligned_cols=142 Identities=20% Similarity=0.173 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHh-cCCCeEe--eeCCcc--cHHHHhhh-ccccccCCCCCC--CHHHHHHHHhcCCeEEEe-CCCCCCHH
Q 027740 3 EGLKILEKVKIA-YDIPIVT--DVHETV--QCEEVGKV-ADIIQIPAFLCR--QTDLLVAAAKTGKIINIK-KGQFCASS 73 (219)
Q Consensus 3 ~gl~~L~~~~~~-~Gi~~~t--t~~d~~--~~~~l~~~-vd~~kI~S~~~~--n~~LL~~~a~~gkPVils-tG~~~t~~ 73 (219)
.|++.++...+. .+++++. .+.++. .++.+.+. ++++-+...... ...+++++-+.|+++++. -+.. |.+
T Consensus 39 ~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~-t~~ 117 (202)
T cd04726 39 EGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVE-DPE 117 (202)
T ss_pred hCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCC-CHH
Confidence 467777777765 4777776 566664 45666676 888887665432 356788888889999986 5555 888
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccH
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELI 151 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~ 151 (219)
|+..+. +.|.. +++++-+..- ... .......+..+++ .++||..+ +|.+
T Consensus 118 e~~~~~----~~~~d-~v~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~i~~~--------------------GGI~--- 168 (202)
T cd04726 118 KRAKLL----KLGVD-IVILHRGIDAQAAG-GWWPEDDLKKVKKLLGVKVAVA--------------------GGIT--- 168 (202)
T ss_pred HHHHHH----HCCCC-EEEEcCcccccccC-CCCCHHHHHHHHhhcCCCEEEE--------------------CCcC---
Confidence 887633 34554 5555432110 010 1134566666666 68899875 2432
Q ss_pred HHHHHHHHHcCCcEEEEeeecCC
Q 027740 152 PCIARTAIAVGVDGVFMEVHDDP 174 (219)
Q Consensus 152 ~~~~~aAvalGA~GlvIEkH~t~ 174 (219)
..-...+...||+|+++=+.++-
T Consensus 169 ~~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 169 PDTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHHHHHHhcCCCEEEEeehhcC
Confidence 34455778899999999988763
No 53
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=95.94 E-value=0.41 Score=43.60 Aligned_cols=165 Identities=16% Similarity=0.199 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHH------HHhhh-ccccccC-----CC-CCC-------CHHHHHHHHh-cCCeEE
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCE------EVGKV-ADIIQIP-----AF-LCR-------QTDLLVAAAK-TGKIIN 63 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~------~l~~~-vd~~kI~-----S~-~~~-------n~~LL~~~a~-~gkPVi 63 (219)
++.+.+..++.+++++..++-...-+ .+++. +|++.|- .. ... -.++++++.+ +++||+
T Consensus 90 ~~~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~ 169 (334)
T PRK07565 90 LELIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVA 169 (334)
T ss_pred HHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEE
Confidence 45555566777899999887644333 22334 6676661 11 000 1356677765 579999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC----------------CccchhHHHHHh-cCCCEEEcCC
Q 027740 64 IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL----------------IVDPRNLEWMRE-ANCPVVADVT 126 (219)
Q Consensus 64 lstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~----------------~~nl~~i~~lk~-~~~pV~~ds~ 126 (219)
+|-+.. .+++...++.+.+.|..-|++..+......+.. ...++.+..+++ .++||+...
T Consensus 170 vKl~p~--~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~G- 246 (334)
T PRK07565 170 VKLSPY--FSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATT- 246 (334)
T ss_pred EEeCCC--chhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEEC-
Confidence 995543 457777888888899887877666422111100 012344555555 678987632
Q ss_pred CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Q 027740 127 HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKV 203 (219)
Q Consensus 127 Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~ 203 (219)
|.+. ..-+...+.+||+++.|=+-+- -++ |+-++++.++++..-..
T Consensus 247 -------------------GI~s--~~Da~e~l~aGA~~V~v~t~~~-----~~g-----~~~~~~i~~~L~~~l~~ 292 (334)
T PRK07565 247 -------------------GVHD--AEDVIKMLLAGADVVMIASALL-----RHG-----PDYIGTILRGLEDWMER 292 (334)
T ss_pred -------------------CCCC--HHHHHHHHHcCCCceeeehHHh-----hhC-----cHHHHHHHHHHHHHHHH
Confidence 2221 2334556679999776653311 121 45666677766665443
No 54
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.91 E-value=0.091 Score=45.81 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=66.7
Q ss_pred CCCCCCCHHH----HHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhc
Q 027740 42 PAFLCRQTDL----LVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREA 117 (219)
Q Consensus 42 ~S~~~~n~~L----L~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~ 117 (219)
|+..+.|.++ ++++.+.++||.+|.....+ ++....++.+.+.|..-+ |--+.| +...+|++.|..++ .
T Consensus 118 G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~-~~~~~la~~l~~aG~d~i---hv~~~~--~g~~ad~~~I~~i~-~ 190 (233)
T cd02911 118 GEALLKDPERLSEFIKALKETGVPVSVKIRAGVD-VDDEELARLIEKAGADII---HVDAMD--PGNHADLKKIRDIS-T 190 (233)
T ss_pred chHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC-cCHHHHHHHHHHhCCCEE---EECcCC--CCCCCcHHHHHHhc-C
Confidence 5667777644 45555678999999987755 677778888888898643 322333 21246777777665 5
Q ss_pred CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEee
Q 027740 118 NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 118 ~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEk 170 (219)
++||+.+.+=. . ..-+...+..||||++|=+
T Consensus 191 ~ipVIgnGgI~-----------------s-----~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 191 ELFIIGNNSVT-----------------T-----IESAKEMFSYGADMVSVAR 221 (233)
T ss_pred CCEEEEECCcC-----------------C-----HHHHHHHHHcCCCEEEEcC
Confidence 78998753322 1 3445566778999988743
No 55
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=95.87 E-value=0.64 Score=37.68 Aligned_cols=130 Identities=22% Similarity=0.213 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
++.+.++|..+|+.++.. ..++...++ ++.+-.+..+..... ++.+-..++.+.++. . |.+|+..+.+
T Consensus 45 ~~~i~~~~~~~~~~l~~~----~~~~~a~~~g~~~vh~~~~~~~~~~-~~~~~~~~~~~g~~~--~-t~~~~~~~~~--- 113 (196)
T cd00564 45 ARALRELCRKYGVPLIIN----DRVDLALAVGADGVHLGQDDLPVAE-ARALLGPDLIIGVST--H-SLEEALRAEE--- 113 (196)
T ss_pred HHHHHHHHHHhCCeEEEe----ChHHHHHHcCCCEEecCcccCCHHH-HHHHcCCCCEEEeeC--C-CHHHHHHHhh---
Confidence 456777888889999874 246666677 888877765543333 444444567777776 3 7777766543
Q ss_pred HcCCCcEEEEeecCCCCCC---C--CCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 027740 84 LAGNPNVMVCERGTMFGYN---D--LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 157 (219)
Q Consensus 84 ~~Gn~~i~L~~cgs~~~~~---~--~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~a 157 (219)
.|..-+.+... |+.. . ....+..+..+++ .++||..+ ||.. ..-...
T Consensus 114 -~g~d~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~--------------------GGi~---~~~i~~ 166 (196)
T cd00564 114 -LGADYVGFGPV---FPTPTKPGAGPPLGLELLREIAELVEIPVVAI--------------------GGIT---PENAAE 166 (196)
T ss_pred -cCCCEEEECCc---cCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE--------------------CCCC---HHHHHH
Confidence 46544444322 2111 0 1245667777777 78999874 2322 233456
Q ss_pred HHHcCCcEEEEeeec
Q 027740 158 AIAVGVDGVFMEVHD 172 (219)
Q Consensus 158 AvalGA~GlvIEkH~ 172 (219)
....||+|+++=.-+
T Consensus 167 ~~~~Ga~~i~~g~~i 181 (196)
T cd00564 167 VLAAGADGVAVISAI 181 (196)
T ss_pred HHHcCCCEEEEehHh
Confidence 678899998887654
No 56
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.86 E-value=0.96 Score=38.43 Aligned_cols=154 Identities=15% Similarity=0.108 Sum_probs=88.7
Q ss_pred HHHHHHHHhcCCCeEeeeCCc-------ccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 027740 6 KILEKVKIAYDIPIVTDVHET-------VQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~~d~-------~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~ 77 (219)
+.+++..+..+.++..-++-. +.++.+.+. +|.+.++.. ....+++++.+.++|++.+. . +.+++..
T Consensus 43 ~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~--~~~~~~~~~~~~~i~~i~~v--~-~~~~~~~ 117 (236)
T cd04730 43 AEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG--PPAEVVERLKAAGIKVIPTV--T-SVEEARK 117 (236)
T ss_pred HHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC--CCHHHHHHHHHcCCEEEEeC--C-CHHHHHH
Confidence 445555554444443333322 245666667 899999876 56788898888899998874 2 6666554
Q ss_pred HHHHHHHcCCCcEEEEeecCC--CCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHH
Q 027740 78 SAEKVRLAGNPNVMVCERGTM--FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCI 154 (219)
Q Consensus 78 A~e~i~~~Gn~~i~L~~cgs~--~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~ 154 (219)
+. +.|. +.++++.... ...+.....+..+..+++ +++||+.. +|.+. ..-
T Consensus 118 ~~----~~ga-d~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~--------------------GGI~~--~~~ 170 (236)
T cd04730 118 AE----AAGA-DALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAA--------------------GGIAD--GRG 170 (236)
T ss_pred HH----HcCC-CEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEE--------------------CCCCC--HHH
Confidence 43 3454 4555554221 111111124566777777 78999873 23221 233
Q ss_pred HHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHH
Q 027740 155 ARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEEL 197 (219)
Q Consensus 155 ~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~i 197 (219)
...+.+.||+|+++=+=+. .+..+-...+.++++.+.
T Consensus 171 v~~~l~~GadgV~vgS~l~------~~~e~~~~~~~~~~~~~~ 207 (236)
T cd04730 171 IAAALALGADGVQMGTRFL------ATEESGASPAYKQALLAA 207 (236)
T ss_pred HHHHHHcCCcEEEEchhhh------cCcccCCCHHHHHHHHcC
Confidence 4456679999998865432 222333445666666543
No 57
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=95.84 E-value=0.28 Score=44.55 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=46.2
Q ss_pred cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCC-CCCCCCCChHHHHHHHH
Q 027740 117 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP-VDGPTQWPLRNLEELLE 195 (219)
Q Consensus 117 ~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~-~D~~~sl~p~el~~lv~ 195 (219)
.++||.+|.+..- |...-+....+....+|+.|+.||-...|.+.- .+.+.-.+++ ++++
T Consensus 76 ~~lPv~aD~dtGy----------------G~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~e---e~~~ 136 (294)
T TIGR02319 76 VDVPVIMDADAGY----------------GNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTE---EMTG 136 (294)
T ss_pred cCCCEEEECCCCC----------------CCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHH---HHHH
Confidence 5789999999764 322223445667789999999999887775543 2444444555 5556
Q ss_pred HHHHHHHHhCC
Q 027740 196 ELVAIAKVSKG 206 (219)
Q Consensus 196 ~ir~i~~~lg~ 206 (219)
.||.+..+..+
T Consensus 137 kI~Aa~~A~~~ 147 (294)
T TIGR02319 137 KIEAAVEARED 147 (294)
T ss_pred HHHHHHHhccC
Confidence 66666555443
No 58
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=95.74 E-value=0.049 Score=49.31 Aligned_cols=110 Identities=22% Similarity=0.201 Sum_probs=67.6
Q ss_pred ccCCCCCCCHHHHHHHHh-----cCCeEEEeCCCCCC--HHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHH
Q 027740 40 QIPAFLCRQTDLLVAAAK-----TGKIINIKKGQFCA--SSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLE 112 (219)
Q Consensus 40 kI~S~~~~n~~LL~~~a~-----~gkPVilstG~~~t--~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~ 112 (219)
.-||..+.|.+++..+-+ ++.||=+|.=.+.. .++..+.+..+.+.|...|++--|+..-.|.. .+|...|.
T Consensus 98 g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~-~a~w~~i~ 176 (309)
T PF01207_consen 98 GAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQRYKG-PADWEAIA 176 (309)
T ss_dssp T-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS----HHHHH
T ss_pred CcChhhhcChHHhhHHHHhhhcccccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhhcCCc-ccchHHHH
Confidence 368889999876655432 57899998766544 78889999999999987666555543323433 57999999
Q ss_pred HHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH-cCCcEEEEeeec
Q 027740 113 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA-VGVDGVFMEVHD 172 (219)
Q Consensus 113 ~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAva-lGA~GlvIEkH~ 172 (219)
.+++ .++||+++.|=. . ..-+..... .|++|+||=.-.
T Consensus 177 ~i~~~~~ipvi~NGdI~-----------------s-----~~d~~~~~~~tg~dgvMigRga 216 (309)
T PF01207_consen 177 EIKEALPIPVIANGDIF-----------------S-----PEDAERMLEQTGADGVMIGRGA 216 (309)
T ss_dssp HCHHC-TSEEEEESS-------------------S-----HHHHHHHCCCH-SSEEEESHHH
T ss_pred HHhhcccceeEEcCccC-----------------C-----HHHHHHHHHhcCCcEEEEchhh
Confidence 9998 889999975532 1 222223323 399999996543
No 59
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=95.72 E-value=0.14 Score=44.90 Aligned_cols=134 Identities=12% Similarity=0.141 Sum_probs=83.8
Q ss_pred HHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCc
Q 027740 11 VKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPN 89 (219)
Q Consensus 11 ~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~ 89 (219)
.-++-+..++.++||.-+...+++. ++.+.++|..+.. ..|.| .++.. +++|+...++.|...
T Consensus 4 l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~--------s~G~p---D~~~~-~~~e~~~~~~~I~~~---- 67 (243)
T cd00377 4 LLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAA--------SLGLP---DGGLL-TLDEVLAAVRRIARA---- 67 (243)
T ss_pred HHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHH--------hcCCC---CCCcC-CHHHHHHHHHHHHhh----
Confidence 3344456666677777777777776 7777776653321 11444 34444 666666666555421
Q ss_pred EEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 90 VMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 90 i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
..+||..|-+..- |..+-+....+..+..|++|+.||
T Consensus 68 ---------------------------~~~Pv~~D~~~G~----------------g~~~~~~~~v~~~~~~G~~gv~iE 104 (243)
T cd00377 68 ---------------------------VDLPVIADADTGY----------------GNALNVARTVRELEEAGAAGIHIE 104 (243)
T ss_pred ---------------------------ccCCEEEEcCCCC----------------CCHHHHHHHHHHHHHcCCEEEEEe
Confidence 2567777766542 222222333455577999999999
Q ss_pred eecCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHH
Q 027740 170 VHDDPLNAP-VDGPTQWPLRNLEELLEELVAIAKV 203 (219)
Q Consensus 170 kH~t~d~a~-~D~~~sl~p~el~~lv~~ir~i~~~ 203 (219)
-...|.+.- ...+..++++|+.+.++.+++....
T Consensus 105 D~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~ 139 (243)
T cd00377 105 DQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDD 139 (243)
T ss_pred cCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhc
Confidence 887766653 3667778999988888887777654
No 60
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.55 E-value=0.41 Score=41.71 Aligned_cols=142 Identities=11% Similarity=0.050 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-CCeEEEeCCCCC----------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-GKIINIKKGQFC---------- 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-gkPVilstG~~~---------- 70 (219)
+..+++.+++.++++.. =+.+.++++.+-+. ++..-|||...+|.++++++++. +--|++|--.-.
T Consensus 65 ~~~I~~i~~~~~~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~ 144 (234)
T PRK13587 65 FDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEE 144 (234)
T ss_pred HHHHHHHHhhcCCeEEEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcc
Confidence 67889999999988777 78999999998888 99999999999999999999875 222555422110
Q ss_pred -CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCc
Q 027740 71 -ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLR 148 (219)
Q Consensus 71 -t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~ 148 (219)
+--+....++.+...|...+++.+-... ++. .-.|+..+..+.+ .++||.+ +- |.+
T Consensus 145 ~~~~~~~~~~~~~~~~g~~~ii~tdi~~d-Gt~-~G~~~~li~~l~~~~~ipvi~-~G-------------------Gi~ 202 (234)
T PRK13587 145 DTELNLFSFVRQLSDIPLGGIIYTDIAKD-GKM-SGPNFELTGQLVKATTIPVIA-SG-------------------GIR 202 (234)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEecccCc-CCC-CccCHHHHHHHHHhCCCCEEE-eC-------------------CCC
Confidence 1111244455566677777766554221 111 2257788888877 7899987 22 222
Q ss_pred ccHHHHHHHHHHcCCcEEEEee
Q 027740 149 ELIPCIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 149 ~~~~~~~~aAvalGA~GlvIEk 170 (219)
. ..-...+..+|++|+++=+
T Consensus 203 s--~edi~~l~~~G~~~vivG~ 222 (234)
T PRK13587 203 H--QQDIQRLASLNVHAAIIGK 222 (234)
T ss_pred C--HHHHHHHHHcCCCEEEEhH
Confidence 2 2223345578999988743
No 61
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=95.54 E-value=0.2 Score=45.69 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHh-----cCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCccchhHHH
Q 027740 42 PAFLCRQTDLLVAAAK-----TGKIINIKKGQ--FCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEW 113 (219)
Q Consensus 42 ~S~~~~n~~LL~~~a~-----~gkPVilstG~--~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~~~~nl~~i~~ 113 (219)
||..+.|.+++.++.+ ++.||.+|... ..+..++...++.+.+.|..-+ .+|..+.- .|. ...|+..+..
T Consensus 111 Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i-~vh~rt~~~~~~-G~a~~~~i~~ 188 (321)
T PRK10415 111 GSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQAL-TIHGRTRACLFN-GEAEYDSIRA 188 (321)
T ss_pred ccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEE-EEecCccccccC-CCcChHHHHH
Confidence 6778888888766554 46799988743 3233467777777788887655 45655431 121 1357888888
Q ss_pred HHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH-cCCcEEEEeeec
Q 027740 114 MRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA-VGVDGVFMEVHD 172 (219)
Q Consensus 114 lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAva-lGA~GlvIEkH~ 172 (219)
+++ .++||+.+.+=. . ..-+..... .||||+||=+-.
T Consensus 189 ik~~~~iPVI~nGgI~-----------------s-----~~da~~~l~~~gadgVmiGR~~ 227 (321)
T PRK10415 189 VKQKVSIPVIANGDIT-----------------D-----PLKARAVLDYTGADALMIGRAA 227 (321)
T ss_pred HHHhcCCcEEEeCCCC-----------------C-----HHHHHHHHhccCCCEEEEChHh
Confidence 888 899998853322 1 333445554 699999987543
No 62
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.40 E-value=0.22 Score=46.33 Aligned_cols=111 Identities=23% Similarity=0.193 Sum_probs=82.4
Q ss_pred cccCCCCCCCHHHHHHH-----HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCccchhHH
Q 027740 39 IQIPAFLCRQTDLLVAA-----AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLE 112 (219)
Q Consensus 39 ~kI~S~~~~n~~LL~~~-----a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~~~~nl~~i~ 112 (219)
-..||+.+.|.+|+..+ ++++.||-+|-=.+.++++-.+=+..+...|.+.+++--|+-.- +....-+|..+|.
T Consensus 116 g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~ 195 (358)
T KOG2335|consen 116 GGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIK 195 (358)
T ss_pred CCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHH
Confidence 45799999999988765 44789999998888888888888888899999877776665432 2112237999999
Q ss_pred HHHh-cC-CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEee
Q 027740 113 WMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 113 ~lk~-~~-~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEk 170 (219)
.+|+ .. +||+.+.+=. .+..+-+....-||+|+|.=.
T Consensus 196 ~v~~~~~~ipviaNGnI~---------------------~~~d~~~~~~~tG~dGVM~ar 234 (358)
T KOG2335|consen 196 AVRENVPDIPVIANGNIL---------------------SLEDVERCLKYTGADGVMSAR 234 (358)
T ss_pred HHHHhCcCCcEEeeCCcC---------------------cHHHHHHHHHHhCCceEEecc
Confidence 9998 65 9998853321 113556666779999999754
No 63
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=95.37 E-value=0.25 Score=43.81 Aligned_cols=135 Identities=14% Similarity=0.107 Sum_probs=85.3
Q ss_pred cCCCeEeeeC--CcccHHHHhhh-ccccccCC--CCCCC-HHHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcC
Q 027740 15 YDIPIVTDVH--ETVQCEEVGKV-ADIIQIPA--FLCRQ-TDLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAG 86 (219)
Q Consensus 15 ~Gi~~~tt~~--d~~~~~~l~~~-vd~~kI~S--~~~~n-~~LL~~~a~~gkPVils--tG~~~t~~ei~~A~e~i~~~G 86 (219)
.-+..++.+. +...++...+. ++++.|.- .++.+ .+.++++.+.|.-|.+. .-...+.+.+...++.+.+.|
T Consensus 72 ~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g 151 (266)
T cd07944 72 TKIAVMVDYGNDDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIK 151 (266)
T ss_pred CEEEEEECCCCCCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCC
Confidence 3444455443 34556666565 77766653 23332 34566666678766665 222248899999998888889
Q ss_pred CCcEEEEeecCCCCCCCCCccchhHHHHHh-cC--CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCC
Q 027740 87 NPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN--CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGV 163 (219)
Q Consensus 87 n~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~--~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA 163 (219)
...+.|+...... +| +++- +-+..+|+ ++ +|+++ +.|-. .| +-..-+++|+.+||
T Consensus 152 ~~~i~l~DT~G~~-~P-~~v~-~lv~~l~~~~~~~~~i~~-H~Hn~---------------~G---la~AN~laA~~aGa 209 (266)
T cd07944 152 PDVFYIVDSFGSM-YP-EDIK-RIISLLRSNLDKDIKLGF-HAHNN---------------LQ---LALANTLEAIELGV 209 (266)
T ss_pred CCEEEEecCCCCC-CH-HHHH-HHHHHHHHhcCCCceEEE-EeCCC---------------cc---HHHHHHHHHHHcCC
Confidence 8888888876542 22 2221 44556676 66 89999 88863 13 22556789999999
Q ss_pred cEEEEeeecC
Q 027740 164 DGVFMEVHDD 173 (219)
Q Consensus 164 ~GlvIEkH~t 173 (219)
+ .|+.-+.
T Consensus 210 ~--~vd~s~~ 217 (266)
T cd07944 210 E--IIDATVY 217 (266)
T ss_pred C--EEEEecc
Confidence 8 7776544
No 64
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.32 E-value=0.48 Score=40.79 Aligned_cols=143 Identities=16% Similarity=0.187 Sum_probs=89.2
Q ss_pred HHHHHHHhc-CCCeEeeeCC-cccHHHHhhh-ccccccCCCCC----------------CC-HHHHHHHHhcCCeEEEeC
Q 027740 7 ILEKVKIAY-DIPIVTDVHE-TVQCEEVGKV-ADIIQIPAFLC----------------RQ-TDLLVAAAKTGKIINIKK 66 (219)
Q Consensus 7 ~L~~~~~~~-Gi~~~tt~~d-~~~~~~l~~~-vd~~kI~S~~~----------------~n-~~LL~~~a~~gkPVilst 66 (219)
.+++..+.. ++.+.+-... .+.++.+.+. ++.+.|.-.-. .+ .+.++.+.+.|.+|.++.
T Consensus 56 ~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 56 VLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred HHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 344443333 3555432333 6677777776 67666654322 11 255666677888888776
Q ss_pred -CCC---CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cC-CCEEEcCCCCCCCCCCCccCCC
Q 027740 67 -GQF---CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGG 140 (219)
Q Consensus 67 -G~~---~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~-~pV~~ds~Hs~~~~~~~~~~~~ 140 (219)
..+ .+++++...++.+.+.|...+.|+.-... -+|. ++ ..-+..+++ +. +|+++ +.|-.
T Consensus 136 ~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~-~~P~-~v-~~li~~l~~~~~~~~~~~-H~Hn~----------- 200 (265)
T cd03174 136 EDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGL-ATPE-EV-AELVKALREALPDVPLGL-HTHNT----------- 200 (265)
T ss_pred EeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCC-cCHH-HH-HHHHHHHHHhCCCCeEEE-EeCCC-----------
Confidence 222 47889999999998899887777665432 1232 22 244666777 55 89998 78863
Q ss_pred CccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 141 GVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 141 ~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
-| +...-+++|+.+||+ .|+.-+.
T Consensus 201 ----~g---la~an~laA~~aG~~--~id~s~~ 224 (265)
T cd03174 201 ----LG---LAVANSLAALEAGAD--RVDGSVN 224 (265)
T ss_pred ----CC---hHHHHHHHHHHcCCC--EEEeccc
Confidence 12 335668899999998 7776543
No 65
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.32 E-value=0.84 Score=36.35 Aligned_cols=134 Identities=20% Similarity=0.252 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCCeEeeeCCcccHH-------HHhhh-ccccccCCCCCC----CHHHHHHHHhc--CCeEEEeCCCCCCH
Q 027740 7 ILEKVKIAYDIPIVTDVHETVQCE-------EVGKV-ADIIQIPAFLCR----QTDLLVAAAKT--GKIINIKKGQFCAS 72 (219)
Q Consensus 7 ~L~~~~~~~Gi~~~tt~~d~~~~~-------~l~~~-vd~~kI~S~~~~----n~~LL~~~a~~--gkPVilstG~~~t~ 72 (219)
.+...+++.+++++...+.....+ .+.+. +|++.|...... -..+++++.+. +.||+++.......
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~ 127 (200)
T cd04722 48 VLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGEL 127 (200)
T ss_pred HHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCcc
Confidence 467777888999888765433222 55566 899999988864 35677777776 89999998765232
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCC-ccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcc
Q 027740 73 SVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLI-VDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 149 (219)
Q Consensus 73 ~ei~~A~e~i~~~Gn~~i~L~~cgs~-~~~~~~~-~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~ 149 (219)
.+.. +...|. +.+.++.+.. ....... .....+..++. .++||..+. |...
T Consensus 128 ~~~~-----~~~~g~-d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~G--------------------Gi~~ 181 (200)
T cd04722 128 AAAA-----AEEAGV-DEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGG--------------------GIND 181 (200)
T ss_pred chhh-----HHHcCC-CEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEEC--------------------CCCC
Confidence 2211 334454 4555554432 1111110 01233444455 789998742 2211
Q ss_pred cHHHHHHHHHHcCCcEEEE
Q 027740 150 LIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 150 ~~~~~~~aAvalGA~GlvI 168 (219)
+.-...+...||||+++
T Consensus 182 --~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 182 --PEDAAEALALGADGVIV 198 (200)
T ss_pred --HHHHHHHHHhCCCEEEe
Confidence 23344566679998765
No 66
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=95.27 E-value=0.83 Score=39.57 Aligned_cols=131 Identities=21% Similarity=0.209 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
-+.+++.|+++|++|+-- ..++...++ +|-+-+|..++......+.. .-++.|.+|+. +++|.+.|.+
T Consensus 54 a~~~~~lc~~~~v~liIN----d~~dlA~~~~AdGVHlGq~D~~~~~ar~~~-~~~~iIG~S~h---~~eea~~A~~--- 122 (211)
T COG0352 54 AEKLRALCQKYGVPLIIN----DRVDLALAVGADGVHLGQDDMPLAEARELL-GPGLIIGLSTH---DLEEALEAEE--- 122 (211)
T ss_pred HHHHHHHHHHhCCeEEec----CcHHHHHhCCCCEEEcCCcccchHHHHHhc-CCCCEEEeecC---CHHHHHHHHh---
Confidence 467899999999999863 345655667 99999999998877755544 33678888887 7999988754
Q ss_pred HcCCCcEEEEeecCCCCCCC----CCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 84 LAGNPNVMVCERGTMFGYND----LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 84 ~~Gn~~i~L~~cgs~~~~~~----~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
.|...+.+-+. ||++. .-.-+..+.++++ ..+|++. .||.. ..-....
T Consensus 123 -~g~DYv~~Gpi---fpT~tK~~~~~~G~~~l~~~~~~~~iP~vA--------------------IGGi~---~~nv~~v 175 (211)
T COG0352 123 -LGADYVGLGPI---FPTSTKPDAPPLGLEGLREIRELVNIPVVA--------------------IGGIN---LENVPEV 175 (211)
T ss_pred -cCCCEEEECCc---CCCCCCCCCCccCHHHHHHHHHhCCCCEEE--------------------EcCCC---HHHHHHH
Confidence 45444444333 43332 2234555666666 5688754 13432 4556688
Q ss_pred HHcCCcEEEEeeecC
Q 027740 159 IAVGVDGVFMEVHDD 173 (219)
Q Consensus 159 valGA~GlvIEkH~t 173 (219)
...||+|+-+=+-++
T Consensus 176 ~~~Ga~gVAvvsai~ 190 (211)
T COG0352 176 LEAGADGVAVVSAIT 190 (211)
T ss_pred HHhCCCeEEehhHhh
Confidence 999999876644433
No 67
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=95.22 E-value=0.25 Score=46.06 Aligned_cols=128 Identities=19% Similarity=0.100 Sum_probs=77.4
Q ss_pred HHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCC
Q 027740 49 TDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVT 126 (219)
Q Consensus 49 ~~LL~~~a~-~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~ 126 (219)
.+.++.+-+ ++.||++| |.. +.++...+++ .|..-|++...|..- .+.....+.+++.+++ +++||++|+-
T Consensus 225 w~~i~~ir~~~~~pviiK-gV~-~~eda~~a~~----~G~d~I~VSnhGGrq-ld~~~~~~~~L~ei~~~~~~~vi~dGG 297 (361)
T cd04736 225 WQDLRWLRDLWPHKLLVK-GIV-TAEDAKRCIE----LGADGVILSNHGGRQ-LDDAIAPIEALAEIVAATYKPVLIDSG 297 (361)
T ss_pred HHHHHHHHHhCCCCEEEe-cCC-CHHHHHHHHH----CCcCEEEECCCCcCC-CcCCccHHHHHHHHHHHhCCeEEEeCC
Confidence 345666655 67899999 776 9999888765 588777776655431 1111124667777777 7899988632
Q ss_pred CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 027740 127 HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 206 (219)
Q Consensus 127 Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~ 206 (219)
-. .| .. ..-|.++||+.++|-..|----+. ++ ..--..-++.|.++++..=.++|-
T Consensus 298 Ir----------------~g-----~D-v~KALaLGA~aV~iGr~~l~~la~-~G-~~gv~~~l~~l~~el~~~m~l~G~ 353 (361)
T cd04736 298 IR----------------RG-----SD-IVKALALGANAVLLGRATLYGLAA-RG-EAGVSEVLRLLKEEIDRTLALIGC 353 (361)
T ss_pred CC----------------CH-----HH-HHHHHHcCCCEEEECHHHHHHHHh-cC-HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 21 13 22 347899999999998875311110 11 111122455556666666656665
Q ss_pred C
Q 027740 207 K 207 (219)
Q Consensus 207 ~ 207 (219)
.
T Consensus 354 ~ 354 (361)
T cd04736 354 P 354 (361)
T ss_pred C
Confidence 3
No 68
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.20 E-value=0.16 Score=46.45 Aligned_cols=108 Identities=22% Similarity=0.225 Sum_probs=73.9
Q ss_pred ccCCCCCCCHHHHHHHHh-----cC-CeEEEeCCCCCCHHH--HHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 40 QIPAFLCRQTDLLVAAAK-----TG-KIINIKKGQFCASSV--MVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 40 kI~S~~~~n~~LL~~~a~-----~g-kPVilstG~~~t~~e--i~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
..||..+.|.+|+..+=+ .+ +||=+|.=.+-+-.+ ....+..+...|...+++--|+..-.|.. ..|...|
T Consensus 111 g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~~y~~-~ad~~~I 189 (323)
T COG0042 111 GAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLG-PADWDYI 189 (323)
T ss_pred CcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHhcCCC-ccCHHHH
Confidence 458889999887765433 33 899999888765665 66677778888887776655554312321 2799999
Q ss_pred HHHHh-cC-CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH-cCCcEEEEee
Q 027740 112 EWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA-VGVDGVFMEV 170 (219)
Q Consensus 112 ~~lk~-~~-~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAva-lGA~GlvIEk 170 (219)
..+|+ .. +||+.+.|=. . ..-++.... .|+||+||=.
T Consensus 190 ~~vk~~~~~ipvi~NGdI~-----------------s-----~~~a~~~l~~tg~DgVMigR 229 (323)
T COG0042 190 KELKEAVPSIPVIANGDIK-----------------S-----LEDAKEMLEYTGADGVMIGR 229 (323)
T ss_pred HHHHHhCCCCeEEeCCCcC-----------------C-----HHHHHHHHHhhCCCEEEEcH
Confidence 99998 66 9999865521 1 233444444 5799999854
No 69
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=95.19 E-value=0.26 Score=46.08 Aligned_cols=128 Identities=20% Similarity=0.113 Sum_probs=76.0
Q ss_pred HHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c--CCCEEEcC
Q 027740 50 DLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADV 125 (219)
Q Consensus 50 ~LL~~~a~-~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~--~~pV~~ds 125 (219)
+-|+.+.+ ++.||++| |.. +.++...++ +.|..-|.+.-.|-+-.+. -..++..|+.+++ . .+||++|+
T Consensus 218 ~~i~~l~~~~~~PvivK-Gv~-~~eda~~a~----~~Gvd~I~VS~HGGrq~~~-~~a~~~~L~ei~~av~~~i~vi~dG 290 (367)
T TIGR02708 218 RDIEEIAGYSGLPVYVK-GPQ-CPEDADRAL----KAGASGIWVTNHGGRQLDG-GPAAFDSLQEVAEAVDKRVPIVFDS 290 (367)
T ss_pred HHHHHHHHhcCCCEEEe-CCC-CHHHHHHHH----HcCcCEEEECCcCccCCCC-CCcHHHHHHHHHHHhCCCCcEEeeC
Confidence 44665555 68999999 777 777666554 4788777666555431111 1135677888876 4 48999874
Q ss_pred CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhC
Q 027740 126 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSK 205 (219)
Q Consensus 126 ~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg 205 (219)
.=. .| .. ..-|.++||++++|=..+----+. ++ +.--..-++.|.++++..-.++|
T Consensus 291 GIr----------------~g-----~D-v~KaLalGAd~V~igR~~l~~la~-~G-~~gv~~~l~~l~~El~~~M~l~G 346 (367)
T TIGR02708 291 GVR----------------RG-----QH-VFKALASGADLVALGRPVIYGLAL-GG-SQGARQVFEYLNKELKRVMQLTG 346 (367)
T ss_pred CcC----------------CH-----HH-HHHHHHcCCCEEEEcHHHHHHHHh-cC-HHHHHHHHHHHHHHHHHHHHHhC
Confidence 432 13 23 346677999999998764322111 11 00112245566667777777777
Q ss_pred CCc
Q 027740 206 GKQ 208 (219)
Q Consensus 206 ~~~ 208 (219)
...
T Consensus 347 ~~~ 349 (367)
T TIGR02708 347 TQT 349 (367)
T ss_pred CCC
Confidence 643
No 70
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.18 E-value=0.31 Score=44.08 Aligned_cols=108 Identities=21% Similarity=0.191 Sum_probs=65.8
Q ss_pred CCCCCCCHHHHHHHHh-----cCCeEEEeCC--CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCccchhHHH
Q 027740 42 PAFLCRQTDLLVAAAK-----TGKIINIKKG--QFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEW 113 (219)
Q Consensus 42 ~S~~~~n~~LL~~~a~-----~gkPVilstG--~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~~~~nl~~i~~ 113 (219)
||..+.|.+++.++-+ ++.||.+|.- ..-+..++...++.+.+.|..-+++ |..+.. .|. ...|+..+..
T Consensus 109 Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~v-h~r~~~~~~~-~~~~~~~i~~ 186 (319)
T TIGR00737 109 GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTL-HGRTRAQGYS-GEANWDIIAR 186 (319)
T ss_pred cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEE-EcccccccCC-CchhHHHHHH
Confidence 4445667665544433 5799999963 2212234556666777788765544 543322 232 1357888888
Q ss_pred HHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH-HcCCcEEEEeeecC
Q 027740 114 MRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI-AVGVDGVFMEVHDD 173 (219)
Q Consensus 114 lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAv-alGA~GlvIEkH~t 173 (219)
+++ .++||+.+.+=. . ..-+..+. ..||||+||=+-+-
T Consensus 187 i~~~~~ipvi~nGgI~-----------------~-----~~da~~~l~~~gad~VmigR~~l 226 (319)
T TIGR00737 187 VKQAVRIPVIGNGDIF-----------------S-----PEDAKAMLETTGCDGVMIGRGAL 226 (319)
T ss_pred HHHcCCCcEEEeCCCC-----------------C-----HHHHHHHHHhhCCCEEEEChhhh
Confidence 888 889998753321 1 33455565 57999999965443
No 71
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.17 E-value=1.9 Score=37.24 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcC----CCeEe-eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 027740 4 GLKILEKVKIAYD----IPIVT-DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 4 gl~~L~~~~~~~G----i~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~ 77 (219)
+++.+++.+++++ +.+-+ |+.++++++...+. .+|+--| ..|.++++++-+.+.|++- |.. |++|+..
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP---~~~~~v~~~~~~~~i~~iP--G~~-T~~E~~~ 124 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSP---SFNRETAKICNLYQIPYLP--GCM-TVTEIVT 124 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECC---CCCHHHHHHHHHcCCCEEC--CcC-CHHHHHH
Confidence 4556666666663 44444 77777777766666 6665533 4467777777777777775 655 8888887
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 027740 78 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 155 (219)
Q Consensus 78 A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~ 155 (219)
|.+ .|..-+-+ ||.+. +-+..+..++. + ++|++. + ||.. ..-.
T Consensus 125 A~~----~Gad~vkl------FPa~~--~G~~~ik~l~~~~p~ip~~a--t------------------GGI~---~~N~ 169 (213)
T PRK06552 125 ALE----AGSEIVKL------FPGST--LGPSFIKAIKGPLPQVNVMV--T------------------GGVN---LDNV 169 (213)
T ss_pred HHH----cCCCEEEE------CCccc--CCHHHHHHHhhhCCCCEEEE--E------------------CCCC---HHHH
Confidence 754 67765554 44432 44566777777 5 477753 2 2421 2334
Q ss_pred HHHHHcCCcEEEEeeecC
Q 027740 156 RTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 156 ~aAvalGA~GlvIEkH~t 173 (219)
..-.+.|++|+.+=.-++
T Consensus 170 ~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 170 KDWFAAGADAVGIGGELN 187 (213)
T ss_pred HHHHHCCCcEEEEchHHh
Confidence 455788988877765543
No 72
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=95.15 E-value=0.84 Score=41.32 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=81.1
Q ss_pred HHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 027740 7 ILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLA 85 (219)
Q Consensus 7 ~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~ 85 (219)
.|++..++-++.++-.+||.-+...+++. .+.+.++|.-+. ++.|.| ..|.. +++|+...++.|..
T Consensus 6 ~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va--------~slG~p---D~g~l-~~~e~~~~~~~I~~- 72 (290)
T TIGR02321 6 ALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELS--------ASYAVP---DANIL-SMSTHLEMMRAIAS- 72 (290)
T ss_pred HHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHH--------HHCCCC---CcccC-CHHHHHHHHHHHHh-
Confidence 46666666676667777777777766665 666666554321 124554 23333 56665555544421
Q ss_pred CCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcE
Q 027740 86 GNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 165 (219)
Q Consensus 86 Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~G 165 (219)
..++||.+|.+..- |...-+....+....+|+.|
T Consensus 73 ------------------------------~~~lPv~aD~d~Gy----------------G~~~~v~~tV~~~~~aGvag 106 (290)
T TIGR02321 73 ------------------------------TVSIPLIADIDTGF----------------GNAVNVHYVVPQYEAAGASA 106 (290)
T ss_pred ------------------------------ccCCCEEEECCCCC----------------CCcHHHHHHHHHHHHcCCeE
Confidence 14689999988764 32222445566778999999
Q ss_pred EEEeeecCCCCCC--CCCCCCC-ChHHHHHHHHHHHHHHHHh
Q 027740 166 VFMEVHDDPLNAP--VDGPTQW-PLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 166 lvIEkH~t~d~a~--~D~~~sl-~p~el~~lv~~ir~i~~~l 204 (219)
+.||-...|.+.- .+++..+ ++++ +++.|+.+..+.
T Consensus 107 i~IEDq~~pk~cg~~~~g~~~l~~~ee---~~~kI~Aa~~a~ 145 (290)
T TIGR02321 107 IVMEDKTFPKDTSLRTDGRQELVRIEE---FQGKIAAATAAR 145 (290)
T ss_pred EEEeCCCCCcccccccCCCccccCHHH---HHHHHHHHHHhC
Confidence 9999877666631 2443443 5554 555555555553
No 73
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=95.14 E-value=0.37 Score=43.50 Aligned_cols=162 Identities=14% Similarity=0.140 Sum_probs=95.4
Q ss_pred HHHHHHhcCCCeEeeeCCcccHHHHhhh----------ccccccCCC---------C---CCCHHHHHHHHh----cCCe
Q 027740 8 LEKVKIAYDIPIVTDVHETVQCEEVGKV----------ADIIQIPAF---------L---CRQTDLLVAAAK----TGKI 61 (219)
Q Consensus 8 L~~~~~~~Gi~~~tt~~d~~~~~~l~~~----------vd~~kI~S~---------~---~~n~~LL~~~a~----~gkP 61 (219)
|++..++.+.-++-.+||.-+...+++. .+.+.++|. | ++..+++..+.+ +..|
T Consensus 1 lr~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~P 80 (285)
T TIGR02320 1 LRQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKP 80 (285)
T ss_pred ChHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCC
Confidence 3556677788888999999998887776 566665554 2 334455554432 5789
Q ss_pred EEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEE------EeecCCCCCC--CCCcc----chhHHHHHh----cCCCEEE
Q 027740 62 INIK--KGQFCASSVMVNSAEKVRLAGNPNVMV------CERGTMFGYN--DLIVD----PRNLEWMRE----ANCPVVA 123 (219)
Q Consensus 62 Vils--tG~~~t~~ei~~A~e~i~~~Gn~~i~L------~~cgs~~~~~--~~~~n----l~~i~~lk~----~~~pV~~ 123 (219)
|++. +| +++..+...++.+.+.|..-|.+ -+||- ++.. ...+. ...|...++ .+++|..
T Consensus 81 v~~D~d~G--g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~-~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiA 157 (285)
T TIGR02320 81 IILDGDTG--GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSL-FGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIA 157 (285)
T ss_pred EEEecCCC--CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccc-cCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEE
Confidence 6655 66 59999999999999999866655 12221 1110 00011 122333332 2456655
Q ss_pred cCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHH
Q 027740 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELV 198 (219)
Q Consensus 124 ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir 198 (219)
=.|..+. ..|..+. ..-+++...+|||++|+|.. ..++++++++++.++
T Consensus 158 RTDa~~~-------------~~~~~eA-i~Ra~ay~eAGAD~ifv~~~------------~~~~~ei~~~~~~~~ 206 (285)
T TIGR02320 158 RVESLIL-------------GKGMEDA-LKRAEAYAEAGADGIMIHSR------------KKDPDEILEFARRFR 206 (285)
T ss_pred ecccccc-------------cCCHHHH-HHHHHHHHHcCCCEEEecCC------------CCCHHHHHHHHHHhh
Confidence 2222110 0122222 33467889999999999831 124567777777665
No 74
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=95.03 E-value=0.58 Score=43.80 Aligned_cols=113 Identities=19% Similarity=0.118 Sum_probs=64.7
Q ss_pred HHHhhh-ccccccCC---------CCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC
Q 027740 30 EEVGKV-ADIIQIPA---------FLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF 99 (219)
Q Consensus 30 ~~l~~~-vd~~kI~S---------~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~ 99 (219)
+.+.+. +|++-|-. ..-...++.+.+.+.+.||+. .+. .|.++...+.+ .|..-|++-+.++.+
T Consensus 149 ~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~-G~V-~t~e~A~~~~~----aGaDgV~~G~gg~~~ 222 (369)
T TIGR01304 149 PIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA-GGV-NDYTTALHLMR----TGAAGVIVGPGGANT 222 (369)
T ss_pred HHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE-eCC-CCHHHHHHHHH----cCCCEEEECCCCCcc
Confidence 444555 88888742 233355667777788999997 334 48888776653 587766655555432
Q ss_pred CCCCC---CccchhHHHH--------HhcC---CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcE
Q 027740 100 GYNDL---IVDPRNLEWM--------REAN---CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 165 (219)
Q Consensus 100 ~~~~~---~~nl~~i~~l--------k~~~---~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~G 165 (219)
..... .-...+|... ++++ +||+.|..=. .| .-...|+++||||
T Consensus 223 ~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~----------------tg------~di~kAlAlGAda 280 (369)
T TIGR01304 223 TRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIE----------------TS------GDLVKAIACGADA 280 (369)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCC----------------CH------HHHHHHHHcCCCE
Confidence 11000 0112244332 2233 8998763211 12 2245788999999
Q ss_pred EEEee
Q 027740 166 VFMEV 170 (219)
Q Consensus 166 lvIEk 170 (219)
++|=.
T Consensus 281 V~iGt 285 (369)
T TIGR01304 281 VVLGS 285 (369)
T ss_pred eeeHH
Confidence 99854
No 75
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=94.97 E-value=0.16 Score=43.26 Aligned_cols=75 Identities=16% Similarity=-0.010 Sum_probs=60.1
Q ss_pred HHHHHHHHHh-cCCCeEeeeCCcccHHHHhhh-ccccccCCC---------CCCCHHHHHHHHh-cCCeEEEeCCCCCCH
Q 027740 5 LKILEKVKIA-YDIPIVTDVHETVQCEEVGKV-ADIIQIPAF---------LCRQTDLLVAAAK-TGKIINIKKGQFCAS 72 (219)
Q Consensus 5 l~~L~~~~~~-~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~---------~~~n~~LL~~~a~-~gkPVilstG~~~t~ 72 (219)
+..+.+.+++ .|++++.++++.+.+..+.+. +|++.+.++ .-.+..+++++.+ +++||+..-|.. |.
T Consensus 107 ~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~-t~ 185 (221)
T PRK01130 107 LAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRIN-TP 185 (221)
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCC-CH
Confidence 4567788888 999999999999999888888 999887532 2235778888876 489999999998 99
Q ss_pred HHHHHHHH
Q 027740 73 SVMVNSAE 80 (219)
Q Consensus 73 ~ei~~A~e 80 (219)
+++..+.+
T Consensus 186 ~~~~~~l~ 193 (221)
T PRK01130 186 EQAKKALE 193 (221)
T ss_pred HHHHHHHH
Confidence 99887644
No 76
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=94.90 E-value=0.4 Score=43.77 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=67.9
Q ss_pred CCCCCCCHHHHHHHHh-----cCCeEEEeCCCCC----CHHHHHHHHHHHHHcCCCcEEEEeecCC--CCCCC------C
Q 027740 42 PAFLCRQTDLLVAAAK-----TGKIINIKKGQFC----ASSVMVNSAEKVRLAGNPNVMVCERGTM--FGYND------L 104 (219)
Q Consensus 42 ~S~~~~n~~LL~~~a~-----~gkPVilstG~~~----t~~ei~~A~e~i~~~Gn~~i~L~~cgs~--~~~~~------~ 104 (219)
||..+.+.+++..+-+ .++||-+|.-.+. +.++....++.+.+.|..-| -+|..+. -+|.. .
T Consensus 101 Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~i-tvHgRt~~~qg~sg~~~~~~~ 179 (318)
T TIGR00742 101 GACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNF-IVHARKAWLSGLSPKENREIP 179 (318)
T ss_pred ehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEE-EEeCCchhhcCCCccccccCC
Confidence 7788888776655433 4899999995532 33566666777888887554 5566552 12321 1
Q ss_pred CccchhHHHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 105 IVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 105 ~~nl~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
.+|+..+..+++ + ++||+.+.|=.. ..-+..... |+||+||=.-.-
T Consensus 180 ~~~~~~i~~vk~~~~~ipVi~NGdI~s----------------------~~da~~~l~-g~dgVMigRgal 227 (318)
T TIGR00742 180 PLRYERVYQLKKDFPHLTIEINGGIKN----------------------SEQIKQHLS-HVDGVMVGREAY 227 (318)
T ss_pred chhHHHHHHHHHhCCCCcEEEECCcCC----------------------HHHHHHHHh-CCCEEEECHHHH
Confidence 247778888887 6 899988644221 122223333 999999976543
No 77
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=94.81 E-value=1.2 Score=38.70 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-CC-eEEEe----CC------CC
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-GK-IINIK----KG------QF 69 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-gk-PVils----tG------~~ 69 (219)
+..+++.+++.++++.. -+.+.++++.+-+. ++..-||+...+| ++++++++. +. -+++| .| ..
T Consensus 67 ~~~i~~i~~~~~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~ 145 (233)
T cd04723 67 DEAIRELAAAWPLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDF 145 (233)
T ss_pred HHHHHHHHHhCCCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCc
Confidence 66788888888777665 67788888888777 8888999999999 999887774 44 35544 23 22
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCc
Q 027740 70 CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLR 148 (219)
Q Consensus 70 ~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~ 148 (219)
.++.|+ ++.+.+. ...+++...... +.. .-.|+..+..+.+ .++||.+ +- |.+
T Consensus 146 ~~~~~~---~~~~~~~-~~~li~~di~~~-G~~-~g~~~~~~~~i~~~~~ipvi~-~G-------------------Gi~ 199 (233)
T cd04723 146 IGPEEL---LRRLAKW-PEELIVLDIDRV-GSG-QGPDLELLERLAARADIPVIA-AG-------------------GVR 199 (233)
T ss_pred CCHHHH---HHHHHHh-CCeEEEEEcCcc-ccC-CCcCHHHHHHHHHhcCCCEEE-eC-------------------CCC
Confidence 245554 4555555 667888777543 111 2357777877777 7899987 22 322
Q ss_pred ccHHHHHHHHHHcCCcEEEEeee
Q 027740 149 ELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 149 ~~~~~~~~aAvalGA~GlvIEkH 171 (219)
. ..-...+..+|++|+++=+-
T Consensus 200 s--~edi~~l~~~G~~~vivGsa 220 (233)
T cd04723 200 S--VEDLELLKKLGASGALVASA 220 (233)
T ss_pred C--HHHHHHHHHcCCCEEEEehH
Confidence 2 23344667789999988654
No 78
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=94.77 E-value=0.61 Score=40.90 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=83.9
Q ss_pred cCCCeEeee-CCcccHHHHhhh-ccccccCC--CCCCC---------------HHHHHHHHhcCCeEEEeCCCC--CCHH
Q 027740 15 YDIPIVTDV-HETVQCEEVGKV-ADIIQIPA--FLCRQ---------------TDLLVAAAKTGKIINIKKGQF--CASS 73 (219)
Q Consensus 15 ~Gi~~~tt~-~d~~~~~~l~~~-vd~~kI~S--~~~~n---------------~~LL~~~a~~gkPVilstG~~--~t~~ 73 (219)
.+..+.+-. .++.+++...+. ++++.+.- .+..+ .+.++++-+.|..|.+.--.+ .+++
T Consensus 60 ~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~ 139 (259)
T cd07939 60 LPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPD 139 (259)
T ss_pred CCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHH
Confidence 344444433 466677776665 77666542 12111 145556666787766544322 3689
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHH
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIP 152 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~ 152 (219)
.+...++.+.+.|...|.|+...... +|. ++- .-+..+++ +++|+++ +.|-. .| +-.
T Consensus 140 ~~~~~~~~~~~~G~~~i~l~DT~G~~-~P~-~v~-~lv~~l~~~~~~~l~~-H~Hn~---------------~G---la~ 197 (259)
T cd07939 140 FLIEFAEVAQEAGADRLRFADTVGIL-DPF-TTY-ELIRRLRAATDLPLEF-HAHND---------------LG---LAT 197 (259)
T ss_pred HHHHHHHHHHHCCCCEEEeCCCCCCC-CHH-HHH-HHHHHHHHhcCCeEEE-EecCC---------------CC---hHH
Confidence 99999998888999888888865432 232 222 34556777 7799999 77753 13 225
Q ss_pred HHHHHHHHcCCcEEEEeeec
Q 027740 153 CIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 153 ~~~~aAvalGA~GlvIEkH~ 172 (219)
.-+.+|+..|++ +|+.-+
T Consensus 198 An~laAi~aG~~--~vd~s~ 215 (259)
T cd07939 198 ANTLAAVRAGAT--HVSVTV 215 (259)
T ss_pred HHHHHHHHhCCC--EEEEec
Confidence 567899999998 777653
No 79
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=94.76 E-value=0.67 Score=42.19 Aligned_cols=64 Identities=9% Similarity=0.040 Sum_probs=45.4
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-------------CC---CCCCccchhHHHHHh-c--CCC
Q 027740 60 KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-------------GY---NDLIVDPRNLEWMRE-A--NCP 120 (219)
Q Consensus 60 kPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-------------~~---~~~~~nl~~i~~lk~-~--~~p 120 (219)
+||.+|-....+.+++...++.+...|..-|++..+.... ++ ......++.+..+++ . ++|
T Consensus 203 ~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ip 282 (327)
T cd04738 203 VPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIP 282 (327)
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCc
Confidence 8999999987777899999999988898777766653211 01 111134677778877 5 689
Q ss_pred EEE
Q 027740 121 VVA 123 (219)
Q Consensus 121 V~~ 123 (219)
|+.
T Consensus 283 Ii~ 285 (327)
T cd04738 283 IIG 285 (327)
T ss_pred EEE
Confidence 876
No 80
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.76 E-value=0.16 Score=47.18 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh--ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV--ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 82 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~--vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i 82 (219)
+..-++.+++++++ -..+|. +.+.|++- ||++.|++-+.+++...--+...||+|++.+..+++.+|.++.+|..
T Consensus 43 ~~~A~~fAq~~~~~-~~k~y~--syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA 119 (351)
T KOG2741|consen 43 LERAKEFAQRHNIP-NPKAYG--SYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAA 119 (351)
T ss_pred HHHHHHHHHhcCCC-CCcccc--CHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHH
Confidence 44567788999998 444444 55666653 99999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcEEEEee
Q 027740 83 RLAGNPNVMVCER 95 (219)
Q Consensus 83 ~~~Gn~~i~L~~c 95 (219)
+++| +.+++-
T Consensus 120 ~~rg---v~~meg 129 (351)
T KOG2741|consen 120 EARG---VFFMEG 129 (351)
T ss_pred HHcC---cEEEee
Confidence 9877 555554
No 81
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=94.70 E-value=1.2 Score=42.98 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=95.1
Q ss_pred HHHHhhh-ccccccC--CCCCCCH-HHHHHHHhcCCeEE--Ee--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 027740 29 CEEVGKV-ADIIQIP--AFLCRQT-DLLVAAAKTGKIIN--IK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG 100 (219)
Q Consensus 29 ~~~l~~~-vd~~kI~--S~~~~n~-~LL~~~a~~gkPVi--ls--tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~ 100 (219)
++...+. +|++.|. ..+..|. ..++++-+.|+-|. ++ .+.-.+++-+.+.++.+.+.|...|.|+.-....
T Consensus 101 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l- 179 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLL- 179 (467)
T ss_pred HHHHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCc-
Confidence 4444444 6665554 3344453 34555556787665 22 1223378889999999999999888888865542
Q ss_pred CCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC--
Q 027740 101 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA-- 177 (219)
Q Consensus 101 ~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a-- 177 (219)
.| ..+ ..-+..+|+ +++||.+ +.|-. .|. -..-+++|+.+||+ +|+.-..|=-.
T Consensus 180 ~P-~~v-~~Lv~~lk~~~~vpI~~-H~Hnt---------------~Gl---A~AN~laAieaGad--~vD~sv~~~g~ga 236 (467)
T PRK14041 180 TP-KRA-YELVKALKKKFGVPVEV-HSHCT---------------TGL---ASLAYLAAVEAGAD--MFDTAISPFSMGT 236 (467)
T ss_pred CH-HHH-HHHHHHHHHhcCCceEE-EecCC---------------CCc---HHHHHHHHHHhCCC--EEEeeccccCCCC
Confidence 22 112 244666777 8899999 88874 242 25567899999999 88877664211
Q ss_pred -----------C--CCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 178 -----------P--VDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 178 -----------~--~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
+ .....-++++.|.++.+.++++++-.
T Consensus 237 gN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~~y 276 (467)
T PRK14041 237 SQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVREKY 276 (467)
T ss_pred CChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 1 13345577777766666666665544
No 82
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=94.68 E-value=2.6 Score=36.35 Aligned_cols=135 Identities=16% Similarity=0.092 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcC-CCeEe-eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 027740 4 GLKILEKVKIAYD-IPIVT-DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 4 gl~~L~~~~~~~G-i~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e 80 (219)
.++.+++.+++++ +.+-+ |+.++++++.+.+. .+|+--|.. |.++++++-+.+.|++= |.. |+.|+..|.+
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~FivsP~~---~~~v~~~~~~~~i~~iP--G~~-TptEi~~A~~ 119 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVSPGL---TPELAKHAQDHGIPIIP--GVA-TPSEIMLALE 119 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEECCCC---CHHHHHHHHHcCCcEEC--CCC-CHHHHHHHHH
Confidence 4555666666654 44444 77777777777776 777744432 77778877777777775 766 8888887754
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCcc-chhHHHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 027740 81 KVRLAGNPNVMVCERGTMFGYNDLIVD-PRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 157 (219)
Q Consensus 81 ~i~~~Gn~~i~L~~cgs~~~~~~~~~n-l~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~a 157 (219)
.|.+-+=+... ..+. .+-+..|+. | ++|++ ++ +|.. ..-...
T Consensus 120 ----~Ga~~vKlFPA--------~~~GG~~yikal~~plp~i~~~--pt------------------GGV~---~~N~~~ 164 (204)
T TIGR01182 120 ----LGITALKLFPA--------EVSGGVKMLKALAGPFPQVRFC--PT------------------GGIN---LANVRD 164 (204)
T ss_pred ----CCCCEEEECCc--------hhcCCHHHHHHHhccCCCCcEE--ec------------------CCCC---HHHHHH
Confidence 56654444332 2233 566677776 4 66664 33 2311 122223
Q ss_pred HHHcCCcEEEEeeecCCCCCCC
Q 027740 158 AIAVGVDGVFMEVHDDPLNAPV 179 (219)
Q Consensus 158 AvalGA~GlvIEkH~t~d~a~~ 179 (219)
=.+.|+.++.+=....+.....
T Consensus 165 ~l~aGa~~vg~Gs~L~~~~~~~ 186 (204)
T TIGR01182 165 YLAAPNVACGGGSWLVPKDLIA 186 (204)
T ss_pred HHhCCCEEEEEChhhcCchhhc
Confidence 4778888888877776655443
No 83
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.65 E-value=1.7 Score=39.04 Aligned_cols=128 Identities=18% Similarity=0.051 Sum_probs=76.0
Q ss_pred HHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c--CCCEEEc
Q 027740 49 TDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVAD 124 (219)
Q Consensus 49 ~~LL~~~a~-~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~--~~pV~~d 124 (219)
.+.++++.+ ++.||++|. .. +.++...+ .+.|..-|++-.+|-. .......++..+..+++ . ++||+.+
T Consensus 161 ~~~i~~l~~~~~~pvivK~-v~-s~~~a~~a----~~~G~d~I~v~~~gG~-~~~~g~~~~~~l~~i~~~~~~~ipvia~ 233 (299)
T cd02809 161 WDDLAWLRSQWKGPLILKG-IL-TPEDALRA----VDAGADGIVVSNHGGR-QLDGAPATIDALPEIVAAVGGRIEVLLD 233 (299)
T ss_pred HHHHHHHHHhcCCCEEEee-cC-CHHHHHHH----HHCCCCEEEEcCCCCC-CCCCCcCHHHHHHHHHHHhcCCCeEEEe
Confidence 467777776 489999994 33 67775544 4578876766655432 11111236777888866 4 5999875
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 125 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 125 s~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
..=. .| .-...+.++||+|++|=.-|-..-. .++. .--.+.++.+.++++.+-...
T Consensus 234 GGI~----------------~~------~d~~kal~lGAd~V~ig~~~l~~~~-~~g~-~~v~~~i~~l~~el~~~m~~~ 289 (299)
T cd02809 234 GGIR----------------RG------TDVLKALALGADAVLIGRPFLYGLA-AGGE-AGVAHVLEILRDELERAMALL 289 (299)
T ss_pred CCCC----------------CH------HHHHHHHHcCCCEEEEcHHHHHHHH-hcCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3322 12 3345677899999999874332111 1111 111346667777777777777
Q ss_pred CCC
Q 027740 205 KGK 207 (219)
Q Consensus 205 g~~ 207 (219)
|..
T Consensus 290 G~~ 292 (299)
T cd02809 290 GCA 292 (299)
T ss_pred CCC
Confidence 753
No 84
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=94.63 E-value=0.33 Score=42.69 Aligned_cols=127 Identities=16% Similarity=0.148 Sum_probs=82.9
Q ss_pred eCCcccHHHHhhh-ccccccCCCC--CCC-HHHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 027740 23 VHETVQCEEVGKV-ADIIQIPAFL--CRQ-TDLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 23 ~~d~~~~~~l~~~-vd~~kI~S~~--~~n-~~LL~~~a~~gkPVils--tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cg 96 (219)
..+..+++...+. ++++.|.... ..+ .+.++++-+.|.-|.+. .....+++++.+.++.+.+.|...|.|+...
T Consensus 85 ~~~~~~i~~a~~~g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~ 164 (263)
T cd07943 85 IGTVDDLKMAADLGVDVVRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDSA 164 (263)
T ss_pred ccCHHHHHHHHHcCCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3456777776666 8877764322 222 34566666678766544 2444489999999999999998888777765
Q ss_pred CCCCCCCCCccchhHHHHHh-cCC-CEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 97 TMFGYNDLIVDPRNLEWMRE-ANC-PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 97 s~~~~~~~~~nl~~i~~lk~-~~~-pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
... +|. ++. +-+..+|+ ++. |+++ +.|-. .| +-..-+++|+..||+ .|+.-+.
T Consensus 165 G~~-~P~-~v~-~lv~~l~~~~~~~~l~~-H~Hn~---------------~G---lA~AN~laAi~aGa~--~vd~s~~ 219 (263)
T cd07943 165 GAM-LPD-DVR-ERVRALREALDPTPVGF-HGHNN---------------LG---LAVANSLAAVEAGAT--RIDGSLA 219 (263)
T ss_pred CCc-CHH-HHH-HHHHHHHHhCCCceEEE-EecCC---------------cc---hHHHHHHHHHHhCCC--EEEeecc
Confidence 432 222 222 44556677 776 9999 88864 13 224567899999998 7776543
No 85
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=94.58 E-value=0.46 Score=43.66 Aligned_cols=123 Identities=11% Similarity=0.045 Sum_probs=81.5
Q ss_pred CcccHHHHhhh-ccccccCCCCCCC---HHHHHHHHhcCCeEE--E-eCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 027740 25 ETVQCEEVGKV-ADIIQIPAFLCRQ---TDLLVAAAKTGKIIN--I-KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 97 (219)
Q Consensus 25 d~~~~~~l~~~-vd~~kI~S~~~~n---~~LL~~~a~~gkPVi--l-stG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs 97 (219)
+.++++...+. ++++-|+...-.. .+.++.+-+.|.-|. + ...+. +++++.+.++.+.+.|...|.++....
T Consensus 89 ~~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~-~~e~l~~~a~~~~~~Ga~~i~i~DT~G 167 (333)
T TIGR03217 89 TVHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMT-PPEKLAEQAKLMESYGADCVYIVDSAG 167 (333)
T ss_pred CHHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCC-CHHHHHHHHHHHHhcCCCEEEEccCCC
Confidence 56677777776 8888877542221 345555666777653 3 33444 899999999999999998888877655
Q ss_pred CCCCCCCCccchhHHHHHh-cC--CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeec
Q 027740 98 MFGYNDLIVDPRNLEWMRE-AN--CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 98 ~~~~~~~~~nl~~i~~lk~-~~--~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~ 172 (219)
.. +| .++- +-+..+|+ .+ +||++ +.|-+ .| +-..-+.+|+..||+ .|+.-.
T Consensus 168 ~~-~P-~~v~-~~v~~l~~~l~~~i~ig~-H~Hnn---------------lG---la~ANslaAi~aGa~--~iD~Sl 221 (333)
T TIGR03217 168 AM-LP-DDVR-DRVRALKAVLKPETQVGF-HAHHN---------------LS---LAVANSIAAIEAGAT--RIDASL 221 (333)
T ss_pred CC-CH-HHHH-HHHHHHHHhCCCCceEEE-EeCCC---------------Cc---hHHHHHHHHHHhCCC--EEEeec
Confidence 32 22 2222 44556676 55 89999 77864 13 225567899999998 676653
No 86
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=94.57 E-value=0.44 Score=40.83 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCCeEeeeCC----------cccHHH----Hhhh-ccccccCCCCCCCHHHHHHHHh-cCCeEEEeCC
Q 027740 4 GLKILEKVKIAYDIPIVTDVHE----------TVQCEE----VGKV-ADIIQIPAFLCRQTDLLVAAAK-TGKIINIKKG 67 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d----------~~~~~~----l~~~-vd~~kI~S~~~~n~~LL~~~a~-~gkPVilstG 67 (219)
-+..+.+.|+++|++++-+.+- ++.+.. ..+. +|++|++ ...+.+.++++.+ .+.||+++=|
T Consensus 110 ~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~--~~~~~~~~~~i~~~~~~pvv~~GG 187 (235)
T cd00958 110 ELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK--YTGDAESFKEVVEGCPVPVVIAGG 187 (235)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec--CCCCHHHHHHHHhcCCCCEEEeCC
Confidence 4677888889999999998754 344444 4455 8999995 2346777887774 5689999877
Q ss_pred CC-CCHHHHHHHHHHHHHcCCCcE
Q 027740 68 QF-CASSVMVNSAEKVRLAGNPNV 90 (219)
Q Consensus 68 ~~-~t~~ei~~A~e~i~~~Gn~~i 90 (219)
.. .|.++..+-++.+...|..-+
T Consensus 188 ~~~~~~~~~l~~~~~~~~~Ga~gv 211 (235)
T cd00958 188 PKKDSEEEFLKMVYDAMEAGAAGV 211 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEE
Confidence 43 378887777777777887644
No 87
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=94.52 E-value=2.2 Score=38.93 Aligned_cols=89 Identities=19% Similarity=0.337 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHH-------Hhhh-ccccccCCC------CCCC-------HHHHHHHHh-cCCeE
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEE-------VGKV-ADIIQIPAF------LCRQ-------TDLLVAAAK-TGKII 62 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~-------l~~~-vd~~kI~S~------~~~n-------~~LL~~~a~-~gkPV 62 (219)
++.+.+..++.+.+++.+++-.. .+. ++++ +|++.|--. .... .++++++.+ +++||
T Consensus 88 ~~~i~~~~~~~~~pvi~si~g~~-~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv 166 (325)
T cd04739 88 LELIRRAKRAVSIPVIASLNGVS-AGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPV 166 (325)
T ss_pred HHHHHHHHhccCCeEEEEeCCCC-HHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCE
Confidence 34444554556899999886432 222 2233 555554221 1111 356677755 58999
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 027740 63 NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 63 ilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cg 96 (219)
++|-... ++++...++.+.+.|..-|++..+.
T Consensus 167 ~vKl~p~--~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 167 AVKLSPF--FSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred EEEcCCC--ccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 9997654 5577888888888898888777765
No 88
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.48 E-value=0.54 Score=43.66 Aligned_cols=130 Identities=19% Similarity=0.075 Sum_probs=76.7
Q ss_pred HHHHHHHH-hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c--CCCEEEc
Q 027740 49 TDLLVAAA-KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVAD 124 (219)
Q Consensus 49 ~~LL~~~a-~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~--~~pV~~d 124 (219)
.+.|+.+- .+++||++| |.. +.++...++ ..|..-|++...|-..-+ .....+..++.+++ . .+||+.|
T Consensus 210 ~~~l~~lr~~~~~PvivK-gv~-~~~dA~~a~----~~G~d~I~vsnhGGr~ld-~~~~~~~~l~~i~~a~~~~i~vi~d 282 (351)
T cd04737 210 PADIEFIAKISGLPVIVK-GIQ-SPEDADVAI----NAGADGIWVSNHGGRQLD-GGPASFDSLPEIAEAVNHRVPIIFD 282 (351)
T ss_pred HHHHHHHHHHhCCcEEEe-cCC-CHHHHHHHH----HcCCCEEEEeCCCCccCC-CCchHHHHHHHHHHHhCCCCeEEEE
Confidence 34455555 478999999 655 787776655 468877777644433101 11134567777776 4 5899987
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 125 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 125 s~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
..=. .| .-...|.++||+|++|-.-+--.-+. ++.. --..-++.+.++++..-..+
T Consensus 283 GGIr----------------~g------~Di~kaLalGA~~V~iGr~~l~~la~-~G~~-gv~~~l~~l~~El~~~m~l~ 338 (351)
T cd04737 283 SGVR----------------RG------EHVFKALASGADAVAVGRPVLYGLAL-GGAQ-GVASVLEHLNKELKIVMQLA 338 (351)
T ss_pred CCCC----------------CH------HHHHHHHHcCCCEEEECHHHHHHHhh-chHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4322 13 22346778999999998753321111 1100 11235666777777777777
Q ss_pred CCCcc
Q 027740 205 KGKQR 209 (219)
Q Consensus 205 g~~~~ 209 (219)
|....
T Consensus 339 G~~~i 343 (351)
T cd04737 339 GTRTI 343 (351)
T ss_pred CCCCH
Confidence 76443
No 89
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=94.39 E-value=1.4 Score=42.30 Aligned_cols=149 Identities=16% Similarity=0.166 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCH--------HHHHHHHhcCCeEEEeCCCCCCHH
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQT--------DLLVAAAKTGKIINIKKGQFCASS 73 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~--------~LL~~~a~~gkPVilstG~~~t~~ 73 (219)
+-|..|.++|+++|+..+.|+|+.++++...+. .+++-|-.||+..+ .|+..+- .+..++-..|.. |.+
T Consensus 146 ~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL~t~~vd~~~~~~l~~~ip-~~~~~vseSGI~-t~~ 223 (454)
T PRK09427 146 EQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNLRDLSIDLNRTRELAPLIP-ADVIVISESGIY-THA 223 (454)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCC-CCcEEEEeCCCC-CHH
Confidence 358999999999999999999999999998887 99999999988743 3333332 355667779999 999
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCccc-hhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccH
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDP-RNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELI 151 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~~~~nl-~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~ 151 (219)
|+... + .|. +-+|+ |++. ..+ |+ ..+..|....+.|+. =+ .
T Consensus 224 d~~~~----~-~~~-davLi--G~~lm~~~----d~~~~~~~L~~~~vKICG---it-----------------~----- 266 (454)
T PRK09427 224 QVREL----S-PFA-NGFLI--GSSLMAED----DLELAVRKLILGENKVCG---LT-----------------R----- 266 (454)
T ss_pred HHHHH----H-hcC-CEEEE--CHHHcCCC----CHHHHHHHHhccccccCC---CC-----------------C-----
Confidence 98874 2 243 34443 3322 122 22 223333222344532 22 1
Q ss_pred HHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHH
Q 027740 152 PCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEEL 197 (219)
Q Consensus 152 ~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~i 197 (219)
..-+.+|+.+||| +|=.-|.+ ..+-.+++++.+++.+.+
T Consensus 267 ~eda~~a~~~GaD--~lGfIf~~-----~SpR~V~~~~a~~i~~~l 305 (454)
T PRK09427 267 PQDAKAAYDAGAV--YGGLIFVE-----KSPRYVSLEQAQEIIAAA 305 (454)
T ss_pred HHHHHHHHhCCCC--EEeeEeCC-----CCCCCCCHHHHHHHHHhC
Confidence 4567889999998 55444333 344456677777766544
No 90
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=94.26 E-value=0.57 Score=44.08 Aligned_cols=129 Identities=22% Similarity=0.144 Sum_probs=75.4
Q ss_pred HHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c--CCCEEEc
Q 027740 49 TDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVAD 124 (219)
Q Consensus 49 ~~LL~~~a~-~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~--~~pV~~d 124 (219)
.+-|+.+.+ ++.||++| |.. +.++.+.|++ .|..-|++-..|..- .+.-..-+.+|+.+++ . .+||++|
T Consensus 242 W~~i~~lr~~~~~pvivK-gV~-~~~dA~~a~~----~G~d~I~vsnhGGr~-~d~~~~t~~~L~ei~~~~~~~~~vi~d 314 (383)
T cd03332 242 WEDLAFLREWTDLPIVLK-GIL-HPDDARRAVE----AGVDGVVVSNHGGRQ-VDGSIAALDALPEIVEAVGDRLTVLFD 314 (383)
T ss_pred HHHHHHHHHhcCCCEEEe-cCC-CHHHHHHHHH----CCCCEEEEcCCCCcC-CCCCcCHHHHHHHHHHHhcCCCeEEEe
Confidence 344555554 58999999 665 8888887765 587777776665431 1111112456666665 4 4899886
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 125 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 125 s~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
.-=. .| .-...|.++||++++|-.-|----+ .++ ..---.-++.+.++++..-..+
T Consensus 315 GGIr----------------~G------~Dv~KALaLGA~~v~iGr~~l~~l~-~~G-~~gv~~~l~~l~~El~~~m~l~ 370 (383)
T cd03332 315 SGVR----------------TG------ADIMKALALGAKAVLIGRPYAYGLA-LGG-EDGVEHVLRNLLAELDLTMGLA 370 (383)
T ss_pred CCcC----------------cH------HHHHHHHHcCCCEEEEcHHHHHHHH-hcc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3222 13 2234789999999999776431100 011 0011224566667777777777
Q ss_pred CCCc
Q 027740 205 KGKQ 208 (219)
Q Consensus 205 g~~~ 208 (219)
|...
T Consensus 371 G~~~ 374 (383)
T cd03332 371 GIRS 374 (383)
T ss_pred CCCC
Confidence 7643
No 91
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=94.25 E-value=4.6 Score=40.17 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=92.6
Q ss_pred ccccccCCC--CCCCH-HHHHHHHhcCCeEEEe----CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccc
Q 027740 36 ADIIQIPAF--LCRQT-DLLVAAAKTGKIINIK----KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP 108 (219)
Q Consensus 36 vd~~kI~S~--~~~n~-~LL~~~a~~gkPVils----tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl 108 (219)
+|++-|... ++.|. .-++++-+.|+-+.-. ...-.|++.+.+-++.+.+.|...|.|+.-.... .| ..+ .
T Consensus 110 idv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l-~P-~~v-~ 186 (596)
T PRK14042 110 VDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDMAGLL-TP-TVT-V 186 (596)
T ss_pred CCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCcccCC-CH-HHH-H
Confidence 666666543 33342 3456666677744332 3334499999999999999999888888765432 12 112 2
Q ss_pred hhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC----------
Q 027740 109 RNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA---------- 177 (219)
Q Consensus 109 ~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a---------- 177 (219)
.-+..+|+ +++||.+ ++|.. .|. -....++|+.+||+ +|+.-..+=-.
T Consensus 187 ~lv~alk~~~~ipi~~-H~Hnt---------------~Gl---a~an~laAieaGad--~iD~ai~glGg~tGn~~tE~l 245 (596)
T PRK14042 187 ELYAGLKQATGLPVHL-HSHST---------------SGL---ASICHYEAVLAGCN--HIDTAISSFSGGASHPPTEAL 245 (596)
T ss_pred HHHHHHHhhcCCEEEE-EeCCC---------------CCc---HHHHHHHHHHhCCC--EEEeccccccCCCCcHhHHHH
Confidence 44566777 8899999 88874 242 14557899999999 88876553211
Q ss_pred ---C--CCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 178 ---P--VDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 178 ---~--~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
+ .....-++++.+.++-+.++++++..
T Consensus 246 v~~L~~~g~~tgidl~~l~~~~~~~~~vr~~y 277 (596)
T PRK14042 246 VAALTDTPYDTELDLNILLEIDDYFKAVRKKY 277 (596)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 14455677777777766666665544
No 92
>PRK09875 putative hydrolase; Provisional
Probab=94.21 E-value=0.69 Score=41.83 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCCeEe-eeCCc----------ccHHHHhhh-c--------------ccc-ccCCCC--CCC--HHHHH
Q 027740 5 LKILEKVKIAYDIPIVT-DVHET----------VQCEEVGKV-A--------------DII-QIPAFL--CRQ--TDLLV 53 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t-t~~d~----------~~~~~l~~~-v--------------d~~-kI~S~~--~~n--~~LL~ 53 (219)
...|++..++.|+.+++ |=|.. .+++.+++. + -++ +||+.. ++. ...++
T Consensus 63 ~~~l~~is~~tgv~Iv~~TG~y~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~kvl~ 142 (292)
T PRK09875 63 AQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEKVFI 142 (292)
T ss_pred HHHHHHHHHHhCCcEEEcCcCCCCccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCCCCHHHHHHHH
Confidence 46789999999999887 44333 244444432 2 245 888765 453 34555
Q ss_pred HHH----hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC--CcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEc
Q 027740 54 AAA----KTGKIINIKKGQFCASSVMVNSAEKVRLAGN--PNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVAD 124 (219)
Q Consensus 54 ~~a----~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn--~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~d 124 (219)
++| .||.||++-|+.. + +-..-++.+.+.|- .+++++|+... .|+.-+..+.+.++-|.||
T Consensus 143 Aaa~a~~~TG~pi~~Ht~~~-~--~g~e~l~il~e~Gvd~~rvvi~H~d~~-------~d~~~~~~l~~~G~~l~fD 209 (292)
T PRK09875 143 AAALAHNQTGRPISTHTSFS-T--MGLEQLALLQAHGVDLSRVTVGHCDLK-------DNLDNILKMIDLGAYVQFD 209 (292)
T ss_pred HHHHHHHHHCCcEEEcCCCc-c--chHHHHHHHHHcCcCcceEEEeCCCCC-------CCHHHHHHHHHcCCEEEec
Confidence 544 4799999998775 3 33334677888897 78999998642 3666666666688999986
No 93
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=94.21 E-value=0.55 Score=39.74 Aligned_cols=135 Identities=19% Similarity=0.171 Sum_probs=79.9
Q ss_pred HhcCCCeEeeeCC--ccc----HHHHhhh-ccccccC--------------CCCCCCHH----HHHHHHh-cCCeEEEeC
Q 027740 13 IAYDIPIVTDVHE--TVQ----CEEVGKV-ADIIQIP--------------AFLCRQTD----LLVAAAK-TGKIINIKK 66 (219)
Q Consensus 13 ~~~Gi~~~tt~~d--~~~----~~~l~~~-vd~~kI~--------------S~~~~n~~----LL~~~a~-~gkPVilst 66 (219)
.+.+.+++..+.. +++ +..+.+. +|.++|- +....+.. +++++.+ .+.||.+|.
T Consensus 51 ~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~ 130 (231)
T cd02801 51 NPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKI 130 (231)
T ss_pred CccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4567777777653 332 2233343 5666652 23334544 4444433 357999986
Q ss_pred CCCCCHH-HHHHHHHHHHHcCCCcEEEEeecCCCC-CCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCcc
Q 027740 67 GQFCASS-VMVNSAEKVRLAGNPNVMVCERGTMFG-YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVA 143 (219)
Q Consensus 67 G~~~t~~-ei~~A~e~i~~~Gn~~i~L~~cgs~~~-~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~ 143 (219)
..+.+.+ +....++.+.+.|..-+ .+|..+... +. ...|+..+..+++ .++||+++.+=.
T Consensus 131 r~~~~~~~~~~~~~~~l~~~Gvd~i-~v~~~~~~~~~~-~~~~~~~~~~i~~~~~ipvi~~Ggi~--------------- 193 (231)
T cd02801 131 RLGWDDEEETLELAKALEDAGASAL-TVHGRTREQRYS-GPADWDYIAEIKEAVSIPVIANGDIF--------------- 193 (231)
T ss_pred eeccCCchHHHHHHHHHHHhCCCEE-EECCCCHHHcCC-CCCCHHHHHHHHhCCCCeEEEeCCCC---------------
Confidence 5554444 88888888888887544 455554211 21 1257788888888 789998853221
Q ss_pred CCCCcccHHHHHHHHHHc-CCcEEEEeee
Q 027740 144 SGGLRELIPCIARTAIAV-GVDGVFMEVH 171 (219)
Q Consensus 144 ~~G~~~~~~~~~~aAval-GA~GlvIEkH 171 (219)
. ..-+..++.. ||||+++=+-
T Consensus 194 -----~--~~d~~~~l~~~gad~V~igr~ 215 (231)
T cd02801 194 -----S--LEDALRCLEQTGVDGVMIGRG 215 (231)
T ss_pred -----C--HHHHHHHHHhcCCCEEEEcHH
Confidence 1 2334455666 8999988654
No 94
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=94.19 E-value=0.56 Score=45.02 Aligned_cols=150 Identities=18% Similarity=0.123 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCCCeEeeeCCcccHHHHhhh-cc-ccccCCCCCCCHHHH-HHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 027740 6 KILEKVKIAYDIPIVTDVHETVQCEEVGKV-AD-IIQIPAFLCRQTDLL-VAAAKTGKIINIKKGQFCASSVMVNSAEKV 82 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd-~~kI~S~~~~n~~LL-~~~a~~gkPVilstG~~~t~~ei~~A~e~i 82 (219)
+.++.+.+..++++.-+-+|++.++...+. .+ .--|.|.+..|++-+ ..+.+.|.||+++-. .++...+.++.+
T Consensus 145 ~~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pvVv~~~---dl~~L~~lv~~~ 221 (450)
T PRK04165 145 KAVKKVAETTDLPLILCSEDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPLVVKAP---NLEELKELVEKL 221 (450)
T ss_pred HHHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcEEEEch---hHHHHHHHHHHH
Confidence 344455555899999999999988887766 34 234455555677744 445667999999543 388888999999
Q ss_pred HHcCCCcEEEEeecCC-CCCCCCCccchhHHHH---H---hcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 027740 83 RLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWM---R---EANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 155 (219)
Q Consensus 83 ~~~Gn~~i~L~~cgs~-~~~~~~~~nl~~i~~l---k---~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~ 155 (219)
.+.|..++ ++.-+.. |.+.. -|+..+..+ + .+++|++..++... . +.....+.
T Consensus 222 ~~~GI~dI-ILDPg~ggf~ksl--~~~~~iRr~Al~~~~~~lgyPil~~~s~k~---------------~--~~~~~E~~ 281 (450)
T PRK04165 222 QAAGIKDL-VLDPGTENIKETL--DDFVQIRRAAIKKGDRPLGYPIIAFPIEAW---------------M--SDPMKEAA 281 (450)
T ss_pred HHcCCCcE-EECCCCchhhhhH--HHHHHHHhhhhhcccccCCCCEEEcchhhc---------------c--cchHHHHH
Confidence 99999776 4555543 43321 233333333 2 26889887666431 0 11112333
Q ss_pred H--HHHHcCCcEEEEeeecCCCCCCC
Q 027740 156 R--TAIAVGVDGVFMEVHDDPLNAPV 179 (219)
Q Consensus 156 ~--aAvalGA~GlvIEkH~t~d~a~~ 179 (219)
. .-++.||+ +||=.|+++...+|
T Consensus 282 ~As~~~~kya~-i~Vl~~~~~~~~~p 306 (450)
T PRK04165 282 IASTLIAKYAD-ILVLHDIEPWELLP 306 (450)
T ss_pred HHHHHHHhCCc-EEEEcCCCHHHHhh
Confidence 3 33678888 77778877766553
No 95
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=94.18 E-value=0.42 Score=42.51 Aligned_cols=149 Identities=16% Similarity=0.128 Sum_probs=83.6
Q ss_pred HHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCC------------CCCHHHHH---HHHh-cCCe-EEEeCC
Q 027740 6 KILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFL------------CRQTDLLV---AAAK-TGKI-INIKKG 67 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~------------~~n~~LL~---~~a~-~gkP-VilstG 67 (219)
+.|++..++-...++-++||..+...+++. +|++-+|+.. ++-.+++. .+.+ ++.| |+.-.+
T Consensus 2 ~~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~ 81 (254)
T cd06557 2 PDLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMP 81 (254)
T ss_pred hhHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCC
Confidence 346666666667788899999999999998 9988888442 12223333 3333 4678 666565
Q ss_pred CC---CCHHH-HHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEE----EcCCCCCCCCCCCccCC
Q 027740 68 QF---CASSV-MVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV----ADVTHSLQQPAGKKLDG 139 (219)
Q Consensus 68 ~~---~t~~e-i~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~----~ds~Hs~~~~~~~~~~~ 139 (219)
.. -++++ +.++++.+.+.|.. -+=+|-+. --...|..+.+.++||+ +.|-+.++..
T Consensus 82 fg~y~~~~~~av~~a~r~~~~aGa~-aVkiEd~~--------~~~~~I~al~~agipV~gHiGL~pq~~~~~g------- 145 (254)
T cd06557 82 FGSYQTSPEQALRNAARLMKEAGAD-AVKLEGGA--------EVAETIRALVDAGIPVMGHIGLTPQSVNQLG------- 145 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHhCCe-EEEEcCcH--------HHHHHHHHHHHcCCCeeccccccceeeeccC-------
Confidence 33 12444 45556666667763 34444431 12244555555678876 2222221100
Q ss_pred CCccCCCCc----ccHHHHHHHHHHcCCcEEEEeee
Q 027740 140 GGVASGGLR----ELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 140 ~~~~~~G~~----~~~~~~~~aAvalGA~GlvIEkH 171 (219)
+-...|+. +-+..-+++-..+||+++++|-=
T Consensus 146 -g~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v 180 (254)
T cd06557 146 -GYKVQGKTEEEAERLLEDALALEEAGAFALVLECV 180 (254)
T ss_pred -CceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 00001211 12234456678999999999964
No 96
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=94.17 E-value=3.5 Score=40.19 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=102.3
Q ss_pred HHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCC-CCCHHHHHHHHHHHHHc
Q 027740 8 LEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQ-FCASSVMVNSAEKVRLA 85 (219)
Q Consensus 8 L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~-~~t~~ei~~A~e~i~~~ 85 (219)
++...+..++++.-+-++++.++...+. +|++-=-+.. +.-.++..+++.|.|+++-... ....+.+...++...+.
T Consensus 200 V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiINsVs~~-~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~ 278 (499)
T TIGR00284 200 VKTALDALDSPVIADTPTLDELYEALKAGASGVIMPDVE-NAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTS 278 (499)
T ss_pred HHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEEECCcc-chhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHC
Confidence 3334444589998899999988887776 6764422332 2235666677888877775433 33468888899999999
Q ss_pred CCCcEEEEeecCCCCCCCCCccchhHHHH---Hh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 027740 86 GNPNVMVCERGTMFGYNDLIVDPRNLEWM---RE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 161 (219)
Q Consensus 86 Gn~~i~L~~cgs~~~~~~~~~nl~~i~~l---k~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAval 161 (219)
|-++ +++..+..+ .+.. -++.|..+ |+ +++|+.+-.+...... ...+.|. -...+..|...
T Consensus 279 Gi~~-IIlDPglg~--~~~~-l~~sL~~l~~~r~~~~~Pil~GvSNvtel~--------daDs~g~---naal~~~a~e~ 343 (499)
T TIGR00284 279 GYSK-VAADPSLSP--PLLG-LLESIIRFRRASRLLNVPLVFGAANVTELV--------DADSHGV---NALLAAIALEA 343 (499)
T ss_pred CCCc-EEEeCCCCc--chHH-HHHHHHHHHHHHHhcCCcEEEeeccccCCC--------ccchhHH---HHHHHHHHHHc
Confidence 9876 577777653 1111 23444444 44 7899765333221000 0112230 02223466888
Q ss_pred CCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCCccccccC
Q 027740 162 GVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGKQRMNIDL 214 (219)
Q Consensus 162 GA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~~~~~~~~~ 214 (219)
||+ ++=.|-.=+| .-....|+++.++-...+...-..-|.+-++|
T Consensus 344 Ga~--ilrvhd~S~k------~r~sV~E~~~A~~m~~~~~~~~~~PKdlg~~L 388 (499)
T TIGR00284 344 GAS--ILYVVEDSYK------SYRSTAEAAEAAKMASAARKLNSLPKDIGTRL 388 (499)
T ss_pred CCC--EEEEcCCccc------ccccHHHHHHHHHHHHHHHhcCCCCCCCCccc
Confidence 998 8878832222 23345566655555444443222233444433
No 97
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=94.17 E-value=0.18 Score=43.68 Aligned_cols=141 Identities=23% Similarity=0.285 Sum_probs=90.0
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-CC-------------eEEEeCC
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-GK-------------IINIKKG 67 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-gk-------------PVilstG 67 (219)
+..+++.+++.++++.- =+.+.++++.+-+. ++.+-|++...+|.++++++++. |. .|..+-+
T Consensus 62 ~~~i~~i~~~~~~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw 141 (229)
T PF00977_consen 62 LELIKEIAKETGIPIQVGGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARDGYKVATNGW 141 (229)
T ss_dssp HHHHHHHHHHSSSEEEEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTT
T ss_pred HHHHHHHHhcCCccEEEeCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCc
Confidence 56788999998888776 68899999998888 99999999999999998888774 32 2222222
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCC
Q 027740 68 QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGG 146 (219)
Q Consensus 68 ~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G 146 (219)
...+--+..+.++.+.+.|...+ |+.+...=+.. .=.|+..+..+++ ++.||++. +|
T Consensus 142 ~~~~~~~~~~~~~~~~~~g~~~i-i~tdi~~dGt~-~G~d~~~~~~l~~~~~~~vias--------------------GG 199 (229)
T PF00977_consen 142 QESSGIDLEEFAKRLEELGAGEI-ILTDIDRDGTM-QGPDLELLKQLAEAVNIPVIAS--------------------GG 199 (229)
T ss_dssp TEEEEEEHHHHHHHHHHTT-SEE-EEEETTTTTTS-SS--HHHHHHHHHHHSSEEEEE--------------------SS
T ss_pred cccCCcCHHHHHHHHHhcCCcEE-EEeeccccCCc-CCCCHHHHHHHHHHcCCCEEEe--------------------cC
Confidence 32112234455566778888777 55555432222 1257788888887 89999872 23
Q ss_pred CcccHHHHHHHHHHcCCcEEEEe
Q 027740 147 LRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 147 ~~~~~~~~~~aAvalGA~GlvIE 169 (219)
.+.. ..+ ..+...|++|+++=
T Consensus 200 v~~~-~Dl-~~l~~~G~~gvivg 220 (229)
T PF00977_consen 200 VRSL-EDL-RELKKAGIDGVIVG 220 (229)
T ss_dssp --SH-HHH-HHHHHTTECEEEES
T ss_pred CCCH-HHH-HHHHHCCCcEEEEe
Confidence 2221 222 24448999998764
No 98
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=94.09 E-value=0.96 Score=38.92 Aligned_cols=142 Identities=17% Similarity=0.139 Sum_probs=86.2
Q ss_pred HHHHhhh-ccccccCCCCCC--------CHHHHHHHHhcC--CeE-EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 027740 29 CEEVGKV-ADIIQIPAFLCR--------QTDLLVAAAKTG--KII-NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 29 ~~~l~~~-vd~~kI~S~~~~--------n~~LL~~~a~~g--kPV-ilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cg 96 (219)
++.+.+. ++.+-+|++... ..++++++.+.+ .++ .+.+.. .++ ++.....|...+.+.-.+
T Consensus 25 ~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~---~~~----i~~a~~~g~~~i~i~~~~ 97 (265)
T cd03174 25 AEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNR---EKG----IERALEAGVDEVRIFDSA 97 (265)
T ss_pred HHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCc---hhh----HHHHHhCCcCEEEEEEec
Confidence 3445555 777777777643 367788888876 444 555542 333 444455677777777765
Q ss_pred CCC----CCCC-----CCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEE
Q 027740 97 TMF----GYND-----LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 167 (219)
Q Consensus 97 s~~----~~~~-----~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~Glv 167 (219)
+.. .+.. .+--+.++...|+.++.|.++...+.. | .-..+.+......+..+|++.+.
T Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~-~------------~~~~~~l~~~~~~~~~~g~~~i~ 164 (265)
T cd03174 98 SETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFG-C------------KTDPEYVLEVAKALEEAGADEIS 164 (265)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecC-C------------CCCHHHHHHHHHHHHHcCCCEEE
Confidence 520 0000 011224444555567887775544320 0 01245567788889999998432
Q ss_pred EeeecCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 027740 168 MEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 168 IEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i 200 (219)
++|..-.++|++++++++.+++.
T Consensus 165 ----------l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 165 ----------LKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred ----------echhcCCcCHHHHHHHHHHHHHh
Confidence 45777889999999999988864
No 99
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=94.02 E-value=2.4 Score=37.71 Aligned_cols=153 Identities=21% Similarity=0.227 Sum_probs=93.8
Q ss_pred cccHHHHhhh-ccccccCCC--CCCC-HHHHHHHHhcCCeEE--EeC---CCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 027740 26 TVQCEEVGKV-ADIIQIPAF--LCRQ-TDLLVAAAKTGKIIN--IKK---GQFCASSVMVNSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 26 ~~~~~~l~~~-vd~~kI~S~--~~~n-~~LL~~~a~~gkPVi--lst---G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cg 96 (219)
...++...+. ++++-|.-. ++.| .+.++.+-+.|+-|. ++. +.. +++.+.+.++.+.+.|...|.|+...
T Consensus 94 ~~di~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~-~~~~~~~~~~~~~~~Ga~~i~l~DT~ 172 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVH-TLEYYVKLAKELEDMGADSICIKDMA 172 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCC-CHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 4455555555 777666322 2222 234555556687655 342 444 89999999999999999888888865
Q ss_pred CCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCC
Q 027740 97 TMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPL 175 (219)
Q Consensus 97 s~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d 175 (219)
... +| .++ ..-+..+|+ +++|+++ +.|-. .| +-..-+++|+..||+ .|+.-+..=
T Consensus 173 G~~-~P-~~v-~~lv~~l~~~~~~~l~~-H~Hnd---------------~G---lA~aN~laA~~aGa~--~vd~sv~Gl 228 (275)
T cd07937 173 GLL-TP-YAA-YELVKALKKEVGLPIHL-HTHDT---------------SG---LAVATYLAAAEAGVD--IVDTAISPL 228 (275)
T ss_pred CCC-CH-HHH-HHHHHHHHHhCCCeEEE-EecCC---------------CC---hHHHHHHHHHHhCCC--EEEEecccc
Confidence 542 22 222 244566777 7799998 88863 24 224557899999998 888654321
Q ss_pred --CC-----------C--CCCCCCCChHHHHHHHHHHHHHHHH
Q 027740 176 --NA-----------P--VDGPTQWPLRNLEELLEELVAIAKV 203 (219)
Q Consensus 176 --~a-----------~--~D~~~sl~p~el~~lv~~ir~i~~~ 203 (219)
++ + ......++++.+..+-+.++++.+-
T Consensus 229 G~~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~~~ 271 (275)
T cd07937 229 SGGTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVRKK 271 (275)
T ss_pred cCCcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 11 0 1334456666666666666555543
No 100
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.97 E-value=1.8 Score=40.18 Aligned_cols=134 Identities=15% Similarity=0.041 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
.+.|.+.|+++|+.|+-.- .++....+ +|-+-+|..++.-....+.. ..++-|..|+ . |++|+..|.+
T Consensus 190 a~~L~~l~~~~~~~lIIND----~vdlAl~~~aDGVHLgq~dl~~~~aR~ll-g~~~iIG~S~--H-s~~e~~~A~~--- 258 (347)
T PRK02615 190 AKKLKELCHRYGALFIVND----RVDIALAVDADGVHLGQEDLPLAVARQLL-GPEKIIGRST--T-NPEEMAKAIA--- 258 (347)
T ss_pred HHHHHHHHHHhCCeEEEeC----hHHHHHHcCCCEEEeChhhcCHHHHHHhc-CCCCEEEEec--C-CHHHHHHHHH---
Confidence 4678899999999988762 46666666 88888887776422222222 2244455555 4 8999888753
Q ss_pred HcCCCcEEEEeecCCC-CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 027740 84 LAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 161 (219)
Q Consensus 84 ~~Gn~~i~L~~cgs~~-~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAval 161 (219)
.|...+.+-+...+- ........+..+..+++ +.+||.. .||.. ..-.....+.
T Consensus 259 -~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~A--------------------iGGI~---~~ni~~l~~~ 314 (347)
T PRK02615 259 -EGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFA--------------------IGGID---KSNIPEVLQA 314 (347)
T ss_pred -cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEE--------------------ECCCC---HHHHHHHHHc
Confidence 577766665543221 00112355666777776 7899865 13432 2233456788
Q ss_pred CCcEEEEeeecC
Q 027740 162 GVDGVFMEVHDD 173 (219)
Q Consensus 162 GA~GlvIEkH~t 173 (219)
||+|+.+-.-+.
T Consensus 315 Ga~gVAvisaI~ 326 (347)
T PRK02615 315 GAKRVAVVRAIM 326 (347)
T ss_pred CCcEEEEeHHHh
Confidence 999999887765
No 101
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.90 E-value=0.93 Score=41.64 Aligned_cols=119 Identities=14% Similarity=0.117 Sum_probs=72.7
Q ss_pred HHHHHHHh-cC-----CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-------------CC---CCCCcc
Q 027740 50 DLLVAAAK-TG-----KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-------------GY---NDLIVD 107 (219)
Q Consensus 50 ~LL~~~a~-~g-----kPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-------------~~---~~~~~n 107 (219)
++++++-+ ++ +||++|-....+.+|+...++.+.+.|-.-|++..+.... ++ +...+.
T Consensus 196 eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~ 275 (344)
T PRK05286 196 ELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERS 275 (344)
T ss_pred HHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHH
Confidence 45555554 34 8999999988788899999999998898767666554211 01 011235
Q ss_pred chhHHHHHh-c--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCC
Q 027740 108 PRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQ 184 (219)
Q Consensus 108 l~~i~~lk~-~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~s 184 (219)
++.+..+++ . ++||+.. ||.+. ..-+...+..||++++|=+- ..
T Consensus 276 l~~v~~l~~~~~~~ipIig~--------------------GGI~s--~eda~e~l~aGAd~V~v~~~-----------~~ 322 (344)
T PRK05286 276 TEVIRRLYKELGGRLPIIGV--------------------GGIDS--AEDAYEKIRAGASLVQIYSG-----------LI 322 (344)
T ss_pred HHHHHHHHHHhCCCCCEEEE--------------------CCCCC--HHHHHHHHHcCCCHHHHHHH-----------HH
Confidence 667777776 5 6898762 12221 23445666789984333221 22
Q ss_pred C-ChHHHHHHHHHHHHHH
Q 027740 185 W-PLRNLEELLEELVAIA 201 (219)
Q Consensus 185 l-~p~el~~lv~~ir~i~ 201 (219)
. .|.-++++.+.+++.-
T Consensus 323 ~~gP~~~~~i~~~L~~~l 340 (344)
T PRK05286 323 YEGPGLVKEIVRGLARLL 340 (344)
T ss_pred HhCchHHHHHHHHHHHHH
Confidence 2 2666777766665543
No 102
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=93.82 E-value=1.4 Score=39.35 Aligned_cols=150 Identities=16% Similarity=0.144 Sum_probs=87.4
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCC------------CCCHHHH---HHHHh-cCCe-EEEeC
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFL------------CRQTDLL---VAAAK-TGKI-INIKK 66 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~------------~~n~~LL---~~~a~-~gkP-Vilst 66 (219)
+..|++..++-...++-++||..+...+++. +|++-+|+.. ++-.+++ +.+++ ++.| |+.-.
T Consensus 4 ~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~ 83 (264)
T PRK00311 4 ISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADM 83 (264)
T ss_pred HHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeC
Confidence 4566776666667778899999999999999 9999888441 2222333 33343 3554 77666
Q ss_pred CCC---CCHHH-HHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEE----EcCCCCCCCCCCCccC
Q 027740 67 GQF---CASSV-MVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV----ADVTHSLQQPAGKKLD 138 (219)
Q Consensus 67 G~~---~t~~e-i~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~----~ds~Hs~~~~~~~~~~ 138 (219)
+.. .++++ +.++++.+++.|.. -+=+|-+. --...|..+.+.++||+ +.|-+.+..
T Consensus 84 pfg~y~~~~~~av~~a~r~~~~aGa~-aVkiEdg~--------~~~~~I~al~~agIpV~gHiGL~pq~~~~~------- 147 (264)
T PRK00311 84 PFGSYQASPEQALRNAGRLMKEAGAH-AVKLEGGE--------EVAETIKRLVERGIPVMGHLGLTPQSVNVL------- 147 (264)
T ss_pred CCCCccCCHHHHHHHHHHHHHHhCCe-EEEEcCcH--------HHHHHHHHHHHCCCCEeeeecccceeeccc-------
Confidence 533 24466 67777777767763 44455431 11244555555788985 322222100
Q ss_pred CCCccCCCCcc----cHHHHHHHHHHcCCcEEEEeee
Q 027740 139 GGGVASGGLRE----LIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 139 ~~~~~~~G~~~----~~~~~~~aAvalGA~GlvIEkH 171 (219)
++=+. -|+.+ -+..-+++-..+||+++++|-=
T Consensus 148 gg~~i-~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v 183 (264)
T PRK00311 148 GGYKV-QGRDEEAAEKLLEDAKALEEAGAFALVLECV 183 (264)
T ss_pred CCeee-ecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 00000 12111 2233455668899999999953
No 103
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.77 E-value=2.6 Score=36.50 Aligned_cols=135 Identities=15% Similarity=0.071 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
.+.+++.|+++|++++-. | .++...++ +|-+-+|..++.=....+..+ .++-|-+|+. .+.++..+|.
T Consensus 60 a~~l~~l~~~~gv~liIN--d--~~dlA~~~~adGVHLg~~d~~~~~~r~~~~-~~~iiG~s~~--~s~~~a~~A~---- 128 (221)
T PRK06512 60 AEKLVPVIQEAGAAALIA--G--DSRIAGRVKADGLHIEGNLAALAEAIEKHA-PKMIVGFGNL--RDRHGAMEIG---- 128 (221)
T ss_pred HHHHHHHHHHhCCEEEEe--C--HHHHHHHhCCCEEEECccccCHHHHHHhcC-CCCEEEecCC--CCHHHHHHhh----
Confidence 467888999999999865 2 36776677 888999988754233232222 3455555533 2577766653
Q ss_pred HcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 027740 84 LAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 162 (219)
Q Consensus 84 ~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalG 162 (219)
+.|...+.+-+--++-..+..-..+..+.++++ +++||.. .||.. ..-...+...|
T Consensus 129 ~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvA--------------------IGGI~---~~n~~~~~~~G 185 (221)
T PRK06512 129 ELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIV--------------------QAGSD---LASAVEVAETG 185 (221)
T ss_pred hcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEE--------------------EeCCC---HHHHHHHHHhC
Confidence 357766666554221111111234556666777 8999865 13421 23344678899
Q ss_pred CcEEEEeeecC
Q 027740 163 VDGVFMEVHDD 173 (219)
Q Consensus 163 A~GlvIEkH~t 173 (219)
|+|+-+-+-+.
T Consensus 186 A~giAvisai~ 196 (221)
T PRK06512 186 AEFVALERAVF 196 (221)
T ss_pred CCEEEEhHHhh
Confidence 99998887754
No 104
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=93.74 E-value=4.7 Score=35.80 Aligned_cols=167 Identities=18% Similarity=0.179 Sum_probs=97.5
Q ss_pred HHHHHHhcCCCeEeeeCCcccHHHHhhh---cccc-ccCCCCCCCHHHHHHHHhcCCeEEEe----CCCCCCH----HHH
Q 027740 8 LEKVKIAYDIPIVTDVHETVQCEEVGKV---ADII-QIPAFLCRQTDLLVAAAKTGKIINIK----KGQFCAS----SVM 75 (219)
Q Consensus 8 L~~~~~~~Gi~~~tt~~d~~~~~~l~~~---vd~~-kI~S~~~~n~~LL~~~a~~gkPVils----tG~~~t~----~ei 75 (219)
++...+..++++.-+-++++-++...+. .+++ -|...+-....++..+++.|.|+++- +|+.-|. +.+
T Consensus 61 v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iINsIs~~~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l 140 (261)
T PRK07535 61 VETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLINSVSAEGEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVA 140 (261)
T ss_pred HHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEEeCCCCCccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHH
Confidence 3444455699998888888777765553 2322 22222222345677788899999973 4544455 445
Q ss_pred HHHHHHHHHcCCC-cEEEEeecCCC-CCCCCCcc---chhHHHHHh-c-CCCEEEcCC-CCCCCCCCCccCCCCccCCCC
Q 027740 76 VNSAEKVRLAGNP-NVMVCERGTMF-GYNDLIVD---PRNLEWMRE-A-NCPVVADVT-HSLQQPAGKKLDGGGVASGGL 147 (219)
Q Consensus 76 ~~A~e~i~~~Gn~-~i~L~~cgs~~-~~~~~~~n---l~~i~~lk~-~-~~pV~~ds~-Hs~~~~~~~~~~~~~~~~~G~ 147 (219)
...++.+.+.|.+ +=+++..+..+ +... .-+ |+++..+++ + ++|+.+-.| =|.+.| .
T Consensus 141 ~~~v~~a~~~GI~~~~IilDPgi~~~~~~~-~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp--------------~ 205 (261)
T PRK07535 141 KELVEKADEYGIPPEDIYIDPLVLPLSAAQ-DAGPEVLETIRRIKELYPKVHTTCGLSNISFGLP--------------N 205 (261)
T ss_pred HHHHHHHHHcCCCHhHEEEeCCCCcccCCh-HHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCc--------------c
Confidence 5566677888874 34577888763 3321 124 677777787 5 899776222 222112 1
Q ss_pred cccHHHH-HHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC
Q 027740 148 RELIPCI-ARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGK 207 (219)
Q Consensus 148 ~~~~~~~-~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~~ 207 (219)
|..+... ...|+.+|.|.-++... | +.|++.++..+..+|..
T Consensus 206 r~~in~~fl~~a~~~Gl~~aI~np~--------~----------~~~~~~~~~~~~l~g~d 248 (261)
T PRK07535 206 RKLINRAFLVMAMGAGMDSAILDPL--------D----------RDLMGAIAAAEALLGQD 248 (261)
T ss_pred hHHHHHHHHHHHHHcCCCEEeeCCC--------C----------HHHHHHHHHHHHHhCCC
Confidence 3333332 34678889986555432 1 34566777777777653
No 105
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=93.72 E-value=2.6 Score=37.02 Aligned_cols=117 Identities=13% Similarity=0.005 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-CCeEEEe-----CC--------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-GKIINIK-----KG-------- 67 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-gkPVils-----tG-------- 67 (219)
+..+++.+++..+++-. =+.+.++++.+-+. ++.+-|||...+|.++++++++. +--|++| .|
T Consensus 63 ~~~i~~i~~~~~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~ 142 (243)
T TIGR01919 63 EMMLEEVVKLLVVVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNR 142 (243)
T ss_pred HHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECC
Confidence 56788888888776544 78899999988887 99999999999999999999874 3225552 22
Q ss_pred -CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEE
Q 027740 68 -QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVA 123 (219)
Q Consensus 68 -~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ 123 (219)
---+-.++...++.+...|...+++.. ...=+.- .=.|+..+..+++ .++||++
T Consensus 143 Gw~~~~~~~~~~~~~~~~~g~~~ii~td-I~~dGt~-~G~d~~l~~~l~~~~~~pvia 198 (243)
T TIGR01919 143 GWSDGGGDLEVLERLLDSGGCSRVVVTD-SKKDGLS-GGPNELLLEVVAARTDAIVAA 198 (243)
T ss_pred CeecCCCcHHHHHHHHHhCCCCEEEEEe-cCCcccC-CCcCHHHHHHHHhhCCCCEEE
Confidence 111333556667777888887775544 3321221 2257888888887 7899987
No 106
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.72 E-value=1.2 Score=40.70 Aligned_cols=114 Identities=19% Similarity=0.178 Sum_probs=61.2
Q ss_pred ccHHHHhhh-ccccccCCCCCC---CHHHHHHHHhcC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-----ee
Q 027740 27 VQCEEVGKV-ADIIQIPAFLCR---QTDLLVAAAKTG--KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-----ER 95 (219)
Q Consensus 27 ~~~~~l~~~-vd~~kI~S~~~~---n~~LL~~~a~~g--kPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~-----~c 95 (219)
+.++.+.+. ++++-|....-. ..++++++-+.. .||+. |.-.|.++...+.+ .|..-|.+. +|
T Consensus 97 ~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~--G~v~t~~~A~~l~~----aGaD~I~vg~g~G~~~ 170 (325)
T cd00381 97 ERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA--GNVVTAEAARDLID----AGADGVKVGIGPGSIC 170 (325)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEE--CCCCCHHHHHHHHh----cCCCEEEECCCCCcCc
Confidence 344444444 676665433222 256677776655 78887 44446777666543 576544441 13
Q ss_pred cCCCCCCCCCccchhHHHHHh----cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 96 GTMFGYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 96 gs~~~~~~~~~nl~~i~~lk~----~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
.+..-......++.++....+ +++||+.|. |.+. ..-...|.++||+|+||
T Consensus 171 ~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA~G--------------------GI~~--~~di~kAla~GA~~Vmi 225 (325)
T cd00381 171 TTRIVTGVGVPQATAVADVAAAARDYGVPVIADG--------------------GIRT--SGDIVKALAAGADAVML 225 (325)
T ss_pred ccceeCCCCCCHHHHHHHHHHHHhhcCCcEEecC--------------------CCCC--HHHHHHHHHcCCCEEEe
Confidence 222100001124555555543 479998642 2111 23345778899999999
No 107
>PRK04302 triosephosphate isomerase; Provisional
Probab=93.66 E-value=2.5 Score=36.25 Aligned_cols=150 Identities=19% Similarity=0.157 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcc---------cHHHHhhh-ccccccCCCCCCC-----HHHHHHHHhcCCeEEEeCCCC
Q 027740 5 LKILEKVKIAYDIPIVTDVHETV---------QCEEVGKV-ADIIQIPAFLCRQ-----TDLLVAAAKTGKIINIKKGQF 69 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~---------~~~~l~~~-vd~~kI~S~~~~n-----~~LL~~~a~~gkPVilstG~~ 69 (219)
...|..++++.++++.+--++.. .++++.++ ++++-|+-.+-+. ..+++++-+.|..+++..|
T Consensus 45 ~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~-- 122 (223)
T PRK04302 45 ALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVN-- 122 (223)
T ss_pred HHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcC--
Confidence 45667777778888887444432 37778888 8888888642221 2567777778988888887
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeec----CCC---CCCCCCccchhHHHHHh-c-CCCEEEcCCCCCCCCCCCccCCC
Q 027740 70 CASSVMVNSAEKVRLAGNPNVMVCERG----TMF---GYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGG 140 (219)
Q Consensus 70 ~t~~ei~~A~e~i~~~Gn~~i~L~~cg----s~~---~~~~~~~nl~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~ 140 (219)
+.+++..+ ...|. .++-++-. +.. .+.++.+ -+.+..+|+ . ++||++-..=+
T Consensus 123 -~~~~~~~~----~~~~~-~~I~~~p~~~igt~~~~~~~~~~~i-~~~~~~ir~~~~~~pvi~GggI~------------ 183 (223)
T PRK04302 123 -NPETSAAA----AALGP-DYVAVEPPELIGTGIPVSKAKPEVV-EDAVEAVKKVNPDVKVLCGAGIS------------ 183 (223)
T ss_pred -CHHHHHHH----hcCCC-CEEEEeCccccccCCCCCcCCHHHH-HHHHHHHHhccCCCEEEEECCCC------------
Confidence 46666543 33343 34443321 110 1111111 133445665 3 68998732211
Q ss_pred CccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHH
Q 027740 141 GVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEEL 197 (219)
Q Consensus 141 ~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~i 197 (219)
. ......+...||||+++ +..++..+.+..+++.+
T Consensus 184 -----~-----~e~~~~~~~~gadGvlV------------Gsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 184 -----T-----GEDVKAALELGADGVLL------------ASGVVKAKDPEAALRDL 218 (223)
T ss_pred -----C-----HHHHHHHHcCCCCEEEE------------ehHHhCCcCHHHHHHHH
Confidence 1 34455667899999988 44555555666665544
No 108
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=93.58 E-value=0.44 Score=42.16 Aligned_cols=84 Identities=21% Similarity=0.262 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCC----CHHHHHHHHhc---CCeEEEeCCCCCCHHH
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCR----QTDLLVAAAKT---GKIINIKKGQFCASSV 74 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~----n~~LL~~~a~~---gkPVilstG~~~t~~e 74 (219)
+-|+.|.++|+++|+.++.++++.++++...++ ++++-+.+++.. ++.+...+.+. ..|++--.|.. |.++
T Consensus 147 ~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~-t~ed 225 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIF-TPED 225 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCC-CHHH
Confidence 358889999999999999999999999998888 999999887664 35556666554 34888888888 8999
Q ss_pred HHHHHHHHHHcCCCcEE
Q 027740 75 MVNSAEKVRLAGNPNVM 91 (219)
Q Consensus 75 i~~A~e~i~~~Gn~~i~ 91 (219)
+..+.+ .|..-++
T Consensus 226 ~~~~~~----~Gad~vl 238 (260)
T PRK00278 226 LKRLAK----AGADAVL 238 (260)
T ss_pred HHHHHH----cCCCEEE
Confidence 887644 4654343
No 109
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=93.47 E-value=1.6 Score=43.24 Aligned_cols=152 Identities=21% Similarity=0.228 Sum_probs=92.8
Q ss_pred HHHHhhh-ccccccCCC--CCCCH-HHHHHHHhcCCeEE--Ee--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 027740 29 CEEVGKV-ADIIQIPAF--LCRQT-DLLVAAAKTGKIIN--IK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG 100 (219)
Q Consensus 29 ~~~l~~~-vd~~kI~S~--~~~n~-~LL~~~a~~gkPVi--ls--tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~ 100 (219)
++...+. +|++.|... +..|. ..++++-+.|+-+. ++ .+...|++.+...++.+.+.|...|.||.-....
T Consensus 102 v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~- 180 (592)
T PRK09282 102 VEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLL- 180 (592)
T ss_pred HHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCc-
Confidence 3444444 666555422 33443 34555556777654 32 2333478999999999999999888888765431
Q ss_pred CCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC--
Q 027740 101 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA-- 177 (219)
Q Consensus 101 ~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a-- 177 (219)
.| ..+ ..-+..+|+ +++||++ +.|.. .|. .....++|+.+||+ +|+.-+.+=-.
T Consensus 181 ~P-~~~-~~lv~~lk~~~~~pi~~-H~Hnt---------------~Gl---a~An~laAv~aGad--~vD~ai~g~g~~a 237 (592)
T PRK09282 181 TP-YAA-YELVKALKEEVDLPVQL-HSHCT---------------SGL---APMTYLKAVEAGVD--IIDTAISPLAFGT 237 (592)
T ss_pred CH-HHH-HHHHHHHHHhCCCeEEE-EEcCC---------------CCc---HHHHHHHHHHhCCC--EEEeeccccCCCc
Confidence 12 112 244566777 8899999 88874 242 25567899999999 88876654211
Q ss_pred -----------C--CCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 178 -----------P--VDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 178 -----------~--~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
+ ......++++.|.++-+.++++.+..
T Consensus 238 gn~~~e~vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y 277 (592)
T PRK09282 238 SQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKY 277 (592)
T ss_pred CCHhHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHh
Confidence 1 13334566677666655555555443
No 110
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=93.45 E-value=0.71 Score=39.12 Aligned_cols=85 Identities=21% Similarity=0.200 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCC----CHHHHHHHHhc---CCeEEEeCCCCCCHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCR----QTDLLVAAAKT---GKIINIKKGQFCASSVM 75 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~----n~~LL~~~a~~---gkPVilstG~~~t~~ei 75 (219)
-++.+.+.+..+|+..+.++++.+++..+.+. ++++-+.+++.+ +.++++.+.+. +.||+..-|.. +++++
T Consensus 109 ~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~~~~pvia~gGI~-s~edi 187 (217)
T cd00331 109 QLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIPKDVILVSESGIS-TPEDV 187 (217)
T ss_pred HHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCccccCcCHHHHHHHHHhCCCCCEEEEEcCCC-CHHHH
Confidence 45677777899999999999999999888888 888877766543 56778888764 68999999999 99998
Q ss_pred HHHHHHHHHcCCCcEEEE
Q 027740 76 VNSAEKVRLAGNPNVMVC 93 (219)
Q Consensus 76 ~~A~e~i~~~Gn~~i~L~ 93 (219)
....+ .|..-+++.
T Consensus 188 ~~~~~----~Ga~gvivG 201 (217)
T cd00331 188 KRLAE----AGADAVLIG 201 (217)
T ss_pred HHHHH----cCCCEEEEC
Confidence 87654 466545443
No 111
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=93.39 E-value=2.9 Score=36.53 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCC-CCCCH--------HHHHHHHhcCCeEEEeCCC-------
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAF-LCRQT--------DLLVAAAKTGKIINIKKGQ------- 68 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~-~~~n~--------~LL~~~a~~gkPVilstG~------- 68 (219)
+..+.+..+++.+|++-.|-++.++-. ..|.+-++|= +.+|. .-+..+.+.+ .=++.+|-
T Consensus 44 ~~~~v~~ik~~~lPvilfp~~~~~i~~---~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~-~e~ip~gYiv~~~~~ 119 (223)
T TIGR01768 44 TDTLIEALRRYGLPIILFPSNPTNVSR---DADALFFPSVLNSDDPYWIIGAQIEAAPKFKKIG-EEIIPEGYIIVNPGG 119 (223)
T ss_pred HHHHHHHHhccCCCEEEeCCCccccCc---CCCEEEEEEeecCCCchHHHhHHHHHHHHHhhhc-ceecceEEEEECCCc
Confidence 445555566788999999988776653 4666666552 22232 2223333333 22233222
Q ss_pred C-----------CCHHHHHHHHHHHHH-cCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c-CCCEEEcCCCCCCCCCC
Q 027740 69 F-----------CASSVMVNSAEKVRL-AGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAG 134 (219)
Q Consensus 69 ~-----------~t~~ei~~A~e~i~~-~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~-~~pV~~ds~Hs~~~~~~ 134 (219)
. .+.+|+..++..-.+ -|. +++-++-|+.|+-+ +|...+..+|+ . ++|+.+-
T Consensus 120 ~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~-~~vYlE~gs~~g~~---v~~e~i~~v~~~~~~~pl~vG---------- 185 (223)
T TIGR01768 120 AAARVTKAKPIPYDKEDLAAYAAMAEEMLGM-PIIYLEAGSGAPEP---VPPELVAEVKKVLDKARLFVG---------- 185 (223)
T ss_pred ceeecccccccCCCcHHHHHHHHHHHHHcCC-cEEEEEecCCCCCC---cCHHHHHHHHHHcCCCCEEEe----------
Confidence 0 144555544433222 244 58899988875433 68888999988 6 8898761
Q ss_pred CccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 135 KKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 135 ~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
+|.|. ...+..+..+|||++++=..
T Consensus 186 ----------GGIrs--~e~a~~l~~aGAD~VVVGs~ 210 (223)
T TIGR01768 186 ----------GGIRS--VEKAREMAEAGADTIVTGNV 210 (223)
T ss_pred ----------cCCCC--HHHHHHHHHcCCCEEEECcH
Confidence 24443 45566777889999887554
No 112
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=93.31 E-value=1.7 Score=38.26 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=41.0
Q ss_pred cCCCEEEcCCCCCCCCCCCccCCCCccCCCC-cccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHH
Q 027740 117 ANCPVVADVTHSLQQPAGKKLDGGGVASGGL-RELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLE 195 (219)
Q Consensus 117 ~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~-~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~ 195 (219)
.++||.+|.+..- |. ..-+....+.-..+|+.|+.||-. ... .++++-+++ +++++
T Consensus 68 ~~iPv~vD~d~Gy----------------G~~~~~v~~tv~~~~~aG~agi~IEDq---~~~-~~~~~l~~~---ee~~~ 124 (238)
T PF13714_consen 68 VSIPVIVDADTGY----------------GNDPENVARTVRELERAGAAGINIEDQ---RCG-HGGKQLVSP---EEMVA 124 (238)
T ss_dssp SSSEEEEE-TTTS----------------SSSHHHHHHHHHHHHHCT-SEEEEESB---STT-TSTT-B--H---HHHHH
T ss_pred hcCcEEEEccccc----------------CchhHHHHHHHHHHHHcCCcEEEeecc---ccC-CCCCceeCH---HHHHH
Confidence 5799999998764 43 334556667779999999999976 111 134444444 55666
Q ss_pred HHHHHHHHhCC
Q 027740 196 ELVAIAKVSKG 206 (219)
Q Consensus 196 ~ir~i~~~lg~ 206 (219)
.||.+.++..+
T Consensus 125 kI~Aa~~a~~~ 135 (238)
T PF13714_consen 125 KIRAAVDARRD 135 (238)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHhccC
Confidence 66766666654
No 113
>PRK00915 2-isopropylmalate synthase; Validated
Probab=93.31 E-value=2.9 Score=40.64 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=92.6
Q ss_pred HHhhh-ccccccCCCCCC--CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------CC
Q 027740 31 EVGKV-ADIIQIPAFLCR--QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------GY 101 (219)
Q Consensus 31 ~l~~~-vd~~kI~S~~~~--n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~------~~ 101 (219)
.|.++ ++.+-+|+.-+. ....++++++..+..-+..-..+..++++.+++.+...|...+.+.-.+|.. +.
T Consensus 34 ~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~~~~~~i~a~~r~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~ 113 (513)
T PRK00915 34 QLERLGVDVIEAGFPASSPGDFEAVKRIARTVKNSTVCGLARAVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKM 113 (513)
T ss_pred HHHHcCCCEEEEcCCCCChHHHHHHHHHHhhCCCCEEEEEccCCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCC
Confidence 44555 777777764443 2556677766554333332222378999999999988888888887766531 11
Q ss_pred CC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCC
Q 027740 102 ND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP 178 (219)
Q Consensus 102 ~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~ 178 (219)
.. +.++ ...+..+|+.+..|.|++-.+. --..+++..++.++..+||+-+ .+
T Consensus 114 s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~---------------r~d~~~l~~~~~~~~~~Ga~~i----------~l 168 (513)
T PRK00915 114 SREEVLEMAVEAVKYARSYTDDVEFSAEDAT---------------RTDLDFLCRVVEAAIDAGATTI----------NI 168 (513)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEeCCCC---------------CCCHHHHHHHHHHHHHcCCCEE----------EE
Confidence 11 1111 1334445556777888654431 0134667788889999999832 25
Q ss_pred CCCCCCCChHHHHHHHHHHHH
Q 027740 179 VDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 179 ~D~~~sl~p~el~~lv~~ir~ 199 (219)
+|---.++|+++.++++.+++
T Consensus 169 ~DTvG~~~P~~~~~~i~~l~~ 189 (513)
T PRK00915 169 PDTVGYTTPEEFGELIKTLRE 189 (513)
T ss_pred ccCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999998875
No 114
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.30 E-value=1.7 Score=40.63 Aligned_cols=118 Identities=16% Similarity=0.139 Sum_probs=64.7
Q ss_pred ccHHHHhhh-ccccccCCCC--------C-CCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 027740 27 VQCEEVGKV-ADIIQIPAFL--------C-RQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 27 ~~~~~l~~~-vd~~kI~S~~--------~-~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cg 96 (219)
+-++.+.+. +|++.|-.+. - ...++.+.+.+.+.||+. |.-.|.++.+.+.+ .|..-| ..-+|
T Consensus 145 e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa--G~V~t~e~A~~l~~----aGAD~V-~VG~G 217 (368)
T PRK08649 145 ELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV--GGCVTYTTALHLMR----TGAAGV-LVGIG 217 (368)
T ss_pred HHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE--eCCCCHHHHHHHHH----cCCCEE-EECCC
Confidence 444555566 8999995542 1 234566666667999998 33347887666553 577544 33443
Q ss_pred CCCCCC-C--CCcc---chhHHHHH----hc-------CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH
Q 027740 97 TMFGYN-D--LIVD---PRNLEWMR----EA-------NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI 159 (219)
Q Consensus 97 s~~~~~-~--~~~n---l~~i~~lk----~~-------~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAv 159 (219)
...... + ..+. +.++.... ++ ++||+.|. |.+. ..-...|.
T Consensus 218 ~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdG--------------------GI~~--~~diakAl 275 (368)
T PRK08649 218 PGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADG--------------------GIGT--SGDIAKAI 275 (368)
T ss_pred CCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeC--------------------CCCC--HHHHHHHH
Confidence 210011 1 0011 22333221 12 58998752 2211 12244788
Q ss_pred HcCCcEEEEeeecC
Q 027740 160 AVGVDGVFMEVHDD 173 (219)
Q Consensus 160 alGA~GlvIEkH~t 173 (219)
++||+|+|+=.=|.
T Consensus 276 alGAd~Vm~Gs~fa 289 (368)
T PRK08649 276 ACGADAVMLGSPLA 289 (368)
T ss_pred HcCCCeecccchhc
Confidence 99999999876554
No 115
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=93.24 E-value=3.6 Score=34.32 Aligned_cols=140 Identities=19% Similarity=0.179 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHhc-CCCeEee--eCCcc--cHHHHhhh-ccccccCCCCCC--CHHHHHHHHhcCCeEEEe-CCCCCCHH
Q 027740 3 EGLKILEKVKIAY-DIPIVTD--VHETV--QCEEVGKV-ADIIQIPAFLCR--QTDLLVAAAKTGKIINIK-KGQFCASS 73 (219)
Q Consensus 3 ~gl~~L~~~~~~~-Gi~~~tt--~~d~~--~~~~l~~~-vd~~kI~S~~~~--n~~LL~~~a~~gkPVils-tG~~~t~~ 73 (219)
.|++.+++.++.+ +..++.+ ++|+. +++.+.+. +|++-+....-. ...+++++-+.|+++++. -+..-..+
T Consensus 38 ~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~ 117 (206)
T TIGR03128 38 EGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVK 117 (206)
T ss_pred hCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHH
Confidence 4788888888875 5556655 45776 67777777 888877765432 257888888899999985 24441346
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCccchhHHHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCccc
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 150 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~~~~nl~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~ 150 (219)
++..+.+ .|-. ++-++-+..- .+. ...+..+..+++ . .+++.++ ||..
T Consensus 118 ~~~~~~~----~g~d-~v~~~pg~~~~~~~--~~~~~~i~~l~~~~~~~~i~v~--------------------GGI~-- 168 (206)
T TIGR03128 118 RAKELKE----LGAD-YIGVHTGLDEQAKG--QNPFEDLQTILKLVKEARVAVA--------------------GGIN-- 168 (206)
T ss_pred HHHHHHH----cCCC-EEEEcCCcCcccCC--CCCHHHHHHHHHhcCCCcEEEE--------------------CCcC--
Confidence 6665533 3554 5544433210 011 123455666665 3 4555443 2321
Q ss_pred HHHHHHHHHHcCCcEEEEeeec
Q 027740 151 IPCIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 151 ~~~~~~aAvalGA~GlvIEkH~ 172 (219)
..-.......||+++++=+-+
T Consensus 169 -~~n~~~~~~~Ga~~v~vGsai 189 (206)
T TIGR03128 169 -LDTIPDVIKLGPDIVIVGGAI 189 (206)
T ss_pred -HHHHHHHHHcCCCEEEEeehh
Confidence 233446678999998886543
No 116
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=93.14 E-value=1.8 Score=39.50 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=58.3
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCC--Ccc-----chhHHHHHh-cCCCEEEcCCCC
Q 027740 57 KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDL--IVD-----PRNLEWMRE-ANCPVVADVTHS 128 (219)
Q Consensus 57 ~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~--~~n-----l~~i~~lk~-~~~pV~~ds~Hs 128 (219)
+.++||++|-.-. +.+||..+++.+...|. +.+=+++++. +.+.. ..+ .+.+..+++ .++||.+=-+
T Consensus 97 ~~~~pvi~si~g~-~~~~~~~~a~~~~~~ga-d~iElN~s~~-~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~-- 171 (325)
T cd04739 97 AVSIPVIASLNGV-SAGGWVDYARQIEEAGA-DALELNIYAL-PTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLS-- 171 (325)
T ss_pred ccCCeEEEEeCCC-CHHHHHHHHHHHHhcCC-CEEEEeCCCC-CCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcC--
Confidence 3478999999666 89999999999988884 5555665431 11110 001 134555666 6889987211
Q ss_pred CCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEee
Q 027740 129 LQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEk 170 (219)
| . -.-+..++.++...||+|+.+--
T Consensus 172 ---p-------------~-~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 172 ---P-------------F-FSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred ---C-------------C-ccCHHHHHHHHHHcCCCeEEEEc
Confidence 0 1 11235678888999999877643
No 117
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=93.13 E-value=0.85 Score=38.97 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=64.6
Q ss_pred HHHHHHHhcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cC-CCEEEcC
Q 027740 50 DLLVAAAKTGKIINIKKGQ--FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADV 125 (219)
Q Consensus 50 ~LL~~~a~~gkPVilstG~--~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~-~pV~~ds 125 (219)
..++.+-+.|..|-+..-. ..+++++.+.++.+...|-..|.|+...... +| .++. .-+..+++ +. +|+++ +
T Consensus 112 ~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~-~P-~~v~-~lv~~~~~~~~~~~l~~-H 187 (237)
T PF00682_consen 112 EAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGIM-TP-EDVA-ELVRALREALPDIPLGF-H 187 (237)
T ss_dssp HHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S--H-HHHH-HHHHHHHHHSTTSEEEE-E
T ss_pred HHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCc-CH-HHHH-HHHHHHHHhccCCeEEE-E
Confidence 4455555678877776432 2388999999999999999888888765532 22 2222 45666777 65 89999 7
Q ss_pred CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 126 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 126 ~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
.|-. .| +...-+++|+.+||+ .|+.-
T Consensus 188 ~Hnd---------------~G---la~An~laA~~aGa~--~id~t 213 (237)
T PF00682_consen 188 AHND---------------LG---LAVANALAALEAGAD--RIDGT 213 (237)
T ss_dssp EBBT---------------TS----HHHHHHHHHHTT-S--EEEEB
T ss_pred ecCC---------------cc---chhHHHHHHHHcCCC--EEEcc
Confidence 7763 13 225668899999999 66654
No 118
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=93.07 E-value=0.73 Score=42.39 Aligned_cols=124 Identities=11% Similarity=0.028 Sum_probs=82.0
Q ss_pred CcccHHHHhhh-ccccccCCCCCCC---HHHHHHHHhcCCeEEE---eCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 027740 25 ETVQCEEVGKV-ADIIQIPAFLCRQ---TDLLVAAAKTGKIINI---KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 97 (219)
Q Consensus 25 d~~~~~~l~~~-vd~~kI~S~~~~n---~~LL~~~a~~gkPVil---stG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs 97 (219)
+.++++...+. ++++.|+...-.. .+.++.+-+.|+-|.+ ..++. +++++...++.+.+.|...+.++....
T Consensus 90 ~~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~-~~e~l~~~a~~~~~~Ga~~i~i~DT~G 168 (337)
T PRK08195 90 TVDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMA-PPEKLAEQAKLMESYGAQCVYVVDSAG 168 (337)
T ss_pred cHHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCC-CHHHHHHHHHHHHhCCCCEEEeCCCCC
Confidence 56677777776 8888877532222 3445555556765443 34455 899999999999999998888877655
Q ss_pred CCCCCCCCccchhHHHHHh-c--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 98 MFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 98 ~~~~~~~~~nl~~i~~lk~-~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
.. +| .++- +-+..+++ + ++||++ +.|-+ .| +-..-+++|+..||+ .|+.-+.
T Consensus 169 ~~-~P-~~v~-~~v~~l~~~l~~~i~ig~-H~Hnn---------------lG---la~ANslaAi~aGa~--~iD~Sl~ 223 (337)
T PRK08195 169 AL-LP-EDVR-DRVRALRAALKPDTQVGF-HGHNN---------------LG---LGVANSLAAVEAGAT--RIDGSLA 223 (337)
T ss_pred CC-CH-HHHH-HHHHHHHHhcCCCCeEEE-EeCCC---------------cc---hHHHHHHHHHHhCCC--EEEecCh
Confidence 32 22 2222 44566676 6 689999 88864 13 225567899999998 7776543
No 119
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=93.00 E-value=3.2 Score=35.80 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhh---hccccccCCCCCCCHHHHHHHHh-------cCCeEEEeCCCCCCHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGK---VADIIQIPAFLCRQTDLLVAAAK-------TGKIINIKKGQFCASSV 74 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~---~vd~~kI~S~~~~n~~LL~~~a~-------~gkPVilstG~~~t~~e 74 (219)
+..+++.+++.-+.+--=+.+.++++.+.. .++..-||+..++|.+++++++. -+++ ...|-. +.
T Consensus 68 ~~~i~~i~~~~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~p~~l~~~~~vvslD~~~g~v--~~~g~~---~~ 142 (221)
T TIGR00734 68 FSLLSKLSKRVELIADCGVRSPEDLETLPFTLEFASRVVVATETLDITELLRECYTVVSLDFKEKFL--DASGLF---ES 142 (221)
T ss_pred HHHHHHHHhhCcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCCHHHHHHhhhEEEEEeECCcc--cccccc---cc
Confidence 577888888754445556777777776633 37888899999999999998872 1111 112222 23
Q ss_pred HHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHH
Q 027740 75 MVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPC 153 (219)
Q Consensus 75 i~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~ 153 (219)
.....+.+...|. .+++... ++-+.. .-.|+..+..+++ .++||++. ||.+.. ..
T Consensus 143 ~~~~~~~~~~~g~-~ii~tdI-~~dGt~-~G~d~eli~~i~~~~~~pvia~--------------------GGi~s~-ed 198 (221)
T TIGR00734 143 LEEVRDFLNSFDY-GLIVLDI-HSVGTM-KGPNLELLTKTLELSEHPVMLG--------------------GGISGV-ED 198 (221)
T ss_pred HHHHHHHHHhcCC-EEEEEEC-CccccC-CCCCHHHHHHHHhhCCCCEEEe--------------------CCCCCH-HH
Confidence 3344555566676 5555433 332332 2368888888887 78999871 232221 22
Q ss_pred HHHHHHHcCCcEEEEee
Q 027740 154 IARTAIAVGVDGVFMEV 170 (219)
Q Consensus 154 ~~~aAvalGA~GlvIEk 170 (219)
+ ..+...||+|+++=+
T Consensus 199 ~-~~l~~~Ga~~vivgs 214 (221)
T TIGR00734 199 L-ELLKEMGVSAVLVAT 214 (221)
T ss_pred H-HHHHHCCCCEEEEhH
Confidence 2 345668999988744
No 120
>PRK08999 hypothetical protein; Provisional
Probab=92.97 E-value=3.4 Score=36.78 Aligned_cols=128 Identities=12% Similarity=0.053 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 82 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i 82 (219)
=.+.+++.|+++|++++.. ..++...++ +|-+-+|..++..... +.. ..++.|.+|+ . +.+|+..|.+
T Consensus 176 ~~~~l~~~~~~~~~~liin----d~~~la~~~~~~GvHl~~~d~~~~~~-r~~-~~~~~ig~S~--h-~~~~~~~a~~-- 244 (312)
T PRK08999 176 LARAALGLCRRAGAQLLLN----GDPELAEDLGADGVHLTSAQLAALAA-RPL-PAGRWVAASC--H-DAEELARAQR-- 244 (312)
T ss_pred HHHHHHHHHHHhCCEEEEE----CcHHHHHhcCCCEEEcChhhcChHhh-ccC-CCCCEEEEec--C-CHHHHHHHHh--
Confidence 3567888899999998876 346777777 8889899888754443 222 2245666776 3 8899877643
Q ss_pred HHcCCCcEEEEeecCCCCCC--CCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH
Q 027740 83 RLAGNPNVMVCERGTMFGYN--DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI 159 (219)
Q Consensus 83 ~~~Gn~~i~L~~cgs~~~~~--~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAv 159 (219)
.|...+.+-+.-.+ ++. ...+.+..+..+++ +++||..= ||.. ..-.....
T Consensus 245 --~~~dyi~~gpvf~t-~tk~~~~~~g~~~~~~~~~~~~~Pv~Ai--------------------GGI~---~~~~~~~~ 298 (312)
T PRK08999 245 --LGVDFAVLSPVQPT-ASHPGAAPLGWEGFAALIAGVPLPVYAL--------------------GGLG---PGDLEEAR 298 (312)
T ss_pred --cCCCEEEECCCcCC-CCCCCCCCCCHHHHHHHHHhCCCCEEEE--------------------CCCC---HHHHHHHH
Confidence 46655555553221 111 12345666777776 78998751 3431 23344567
Q ss_pred HcCCcEEEE
Q 027740 160 AVGVDGVFM 168 (219)
Q Consensus 160 alGA~GlvI 168 (219)
+.||+|+.+
T Consensus 299 ~~g~~gva~ 307 (312)
T PRK08999 299 EHGAQGIAG 307 (312)
T ss_pred HhCCCEEEE
Confidence 889998754
No 121
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=92.94 E-value=0.49 Score=42.21 Aligned_cols=83 Identities=19% Similarity=0.131 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHH----HHHHHH---hcCCeEEEeCCCCCCHHH
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTD----LLVAAA---KTGKIINIKKGQFCASSV 74 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~----LL~~~a---~~gkPVilstG~~~t~~e 74 (219)
+-|+.|.++++++|+.++++++|.+.++...+. .+++-|-.||++.+. --..++ ..+..++-..|.. |.+|
T Consensus 143 ~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~-~~~d 221 (254)
T COG0134 143 EQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGIS-TPED 221 (254)
T ss_pred HHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCcchheecHHHHHHHHhhCCCCcEEEecCCCC-CHHH
Confidence 348999999999999999999999999998888 999999999887532 112222 2356788889999 9999
Q ss_pred HHHHHHHHHHcCCCcE
Q 027740 75 MVNSAEKVRLAGNPNV 90 (219)
Q Consensus 75 i~~A~e~i~~~Gn~~i 90 (219)
+... ...|-+-+
T Consensus 222 v~~l----~~~ga~a~ 233 (254)
T COG0134 222 VRRL----AKAGADAF 233 (254)
T ss_pred HHHH----HHcCCCEE
Confidence 8864 44554433
No 122
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=92.92 E-value=1.5 Score=42.75 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=93.2
Q ss_pred HHHhhh-ccccccCCCCCCCHH--HHHHHHhcC----------CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeec
Q 027740 30 EEVGKV-ADIIQIPAFLCRQTD--LLVAAAKTG----------KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 30 ~~l~~~-vd~~kI~S~~~~n~~--LL~~~a~~g----------kPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cg 96 (219)
+.|.++ ++.+.+|+.-....+ .++++++.. .|.+..-+.. ..++++.|++.+...|.+.+.+.-.+
T Consensus 113 ~~L~~~GVd~IEvG~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~-~~~dId~a~~a~~~a~~~~V~i~i~~ 191 (503)
T PLN03228 113 RQLAKLRVDIMEVGFPGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARC-KKRDIEAAWEALKYAKRPRILAFTST 191 (503)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhcccccccccccceEEeeeccc-CHhhHHHHHHhhcccCCCEEEEEecC
Confidence 345566 888888886666544 377777653 2666666666 77899999998877788878777655
Q ss_pred CCC------CCCC-CCcc--chhHHHHHhcCCC-EEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEE
Q 027740 97 TMF------GYND-LIVD--PRNLEWMREANCP-VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGV 166 (219)
Q Consensus 97 s~~------~~~~-~~~n--l~~i~~lk~~~~p-V~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~Gl 166 (219)
|.+ +... +.++ ...+...|+.++. |.|.+-.+- . -..+++..++.+|..+||+.+
T Consensus 192 Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~--R-------------td~efl~~~~~~a~~~Gad~I 256 (503)
T PLN03228 192 SDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGG--R-------------SDKEFLCKILGEAIKAGATSV 256 (503)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecccccc--c-------------cCHHHHHHHHHHHHhcCCCEE
Confidence 531 1111 1111 1233344444554 666442220 0 124567778889999999832
Q ss_pred EEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 167 FMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 167 vIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
.++|.--.++|.++.++++.+++
T Consensus 257 ----------~l~DTvG~~tP~~v~~lV~~l~~ 279 (503)
T PLN03228 257 ----------GIADTVGINMPHEFGELVTYVKA 279 (503)
T ss_pred ----------EEecCCCCCCHHHHHHHHHHHHH
Confidence 25899999999999999999875
No 123
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=92.77 E-value=1.2 Score=39.33 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cC---CCEEE
Q 027740 50 DLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN---CPVVA 123 (219)
Q Consensus 50 ~LL~~~a~~gkPVils--tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~---~pV~~ 123 (219)
+.++++.+.|..|.+. -+...+++.+...++.+...|...|.|+...... +|. ++ ..-+..+|+ ++ +|+++
T Consensus 118 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~-~P~-~v-~~lv~~l~~~~~~~~i~l~~ 194 (268)
T cd07940 118 EAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYL-TPE-EF-GELIKKLKENVPNIKVPISV 194 (268)
T ss_pred HHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC-CHH-HH-HHHHHHHHHhCCCCceeEEE
Confidence 4666777778888775 3333489999999999999999888888875542 232 22 244666777 65 89998
Q ss_pred cCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCC
Q 027740 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 174 (219)
Q Consensus 124 ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~ 174 (219)
+.|-. .| +-..-+++|+..||+ .|+.-+..
T Consensus 195 -H~Hn~---------------~G---lA~An~laAi~aG~~--~iD~s~~G 224 (268)
T cd07940 195 -HCHND---------------LG---LAVANSLAAVEAGAR--QVECTING 224 (268)
T ss_pred -EecCC---------------cc---hHHHHHHHHHHhCCC--EEEEEeec
Confidence 78863 13 224557899999998 88876443
No 124
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=92.76 E-value=5.1 Score=34.53 Aligned_cols=132 Identities=18% Similarity=0.299 Sum_probs=78.3
Q ss_pred HHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCC----CCCCCH--HHHHHH---HhcCC---e---EEEeCC-----
Q 027740 8 LEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPA----FLCRQT--DLLVAA---AKTGK---I---INIKKG----- 67 (219)
Q Consensus 8 L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S----~~~~n~--~LL~~~---a~~gk---P---VilstG----- 67 (219)
++..++...+|++-+|-+..++-. ..|.+-++| ++-.+. ...+.+ .+.|. | +++--|
T Consensus 45 v~~ik~~~~lPvilfp~~~~~i~~---~aD~~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~ 121 (205)
T TIGR01769 45 VKKIKKITNLPVILFPGNVNGLSR---YADAVFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGY 121 (205)
T ss_pred HHHHHhhcCCCEEEECCCccccCc---CCCEEEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceee
Confidence 344445589999999888876653 466666655 333321 112222 23332 2 122111
Q ss_pred -------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCC
Q 027740 68 -------QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDG 139 (219)
Q Consensus 68 -------~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~ 139 (219)
....++|...-+......|.+.+.| +.++-+.++ +|...+..+|+ .++|+.+-
T Consensus 122 v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~L-e~~sGa~~~---v~~e~i~~Vk~~~~~Pv~vG--------------- 182 (205)
T TIGR01769 122 VGKAREIPYNKPEIAAAYCLAAKYFGMKWVYL-EAGSGASYP---VNPETISLVKKASGIPLIVG--------------- 182 (205)
T ss_pred ecCcccCCCCCHHHHHHHHHHHHHcCCCEEEE-EcCCCCCCC---CCHHHHHHHHHhhCCCEEEe---------------
Confidence 1136777777666677778876665 554443333 67888888888 78998871
Q ss_pred CCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 140 GGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 140 ~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
+|.|. ...+..+...||||+++
T Consensus 183 -----GGIrs--~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 183 -----GGIRS--PEIAYEIVLAGADAIVT 204 (205)
T ss_pred -----CCCCC--HHHHHHHHHcCCCEEEe
Confidence 24433 34556667789998775
No 125
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=92.73 E-value=2.5 Score=41.83 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=93.3
Q ss_pred HHHhhh-ccccccC--CCCCCCH-HHHHHHHhcCCeEEEe----CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 027740 30 EEVGKV-ADIIQIP--AFLCRQT-DLLVAAAKTGKIINIK----KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 101 (219)
Q Consensus 30 ~~l~~~-vd~~kI~--S~~~~n~-~LL~~~a~~gkPVils----tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~ 101 (219)
+...+. +|++.|. ..+..|. ..++++-+.|+-|... .....+++.+...++.+.+.|...|.||.-.... .
T Consensus 98 ~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~-~ 176 (582)
T TIGR01108 98 KKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIKDMAGIL-T 176 (582)
T ss_pred HHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCc-C
Confidence 444444 6655443 2234453 3445555678877753 1111378999999999999999888888765432 2
Q ss_pred CCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC---
Q 027740 102 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA--- 177 (219)
Q Consensus 102 ~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a--- 177 (219)
| ..+ ..-+..+|+ +++||++ +.|.. .|. -..-+++|+.+||+ +|+.-+..=-.
T Consensus 177 P-~~v-~~lv~~lk~~~~~pi~~-H~Hnt---------------~Gl---a~An~laAveaGa~--~vd~ai~GlG~~tG 233 (582)
T TIGR01108 177 P-KAA-YELVSALKKRFGLPVHL-HSHAT---------------TGM---AEMALLKAIEAGAD--GIDTAISSMSGGTS 233 (582)
T ss_pred H-HHH-HHHHHHHHHhCCCceEE-EecCC---------------CCc---HHHHHHHHHHhCCC--EEEecccccccccc
Confidence 2 112 245666777 8899999 88874 242 25567899999999 88875543211
Q ss_pred ----------C--CCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 178 ----------P--VDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 178 ----------~--~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
+ .....-++++.|.++-+.++++.+..
T Consensus 234 n~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~~~Y 272 (582)
T TIGR01108 234 HPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVRKKY 272 (582)
T ss_pred ChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHh
Confidence 1 13334577887777766666665533
No 126
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.70 E-value=0.74 Score=40.86 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=57.1
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC----CCccc----hhHHHHHh-cCCCEEEcCCCC
Q 027740 58 TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND----LIVDP----RNLEWMRE-ANCPVVADVTHS 128 (219)
Q Consensus 58 ~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~----~~~nl----~~i~~lk~-~~~pV~~ds~Hs 128 (219)
.++|++++=+.. +.+++..+++.+...|.. .+=+++++-. ++. .--+. ..+..+|+ .++||.+-- +
T Consensus 88 ~~~p~ivsi~g~-~~~~~~~~a~~~~~~G~d-~iElN~~cP~-~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl--~ 162 (296)
T cd04740 88 FGTPVIASIAGS-TVEEFVEVAEKLADAGAD-AIELNISCPN-VKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKL--T 162 (296)
T ss_pred CCCcEEEEEecC-CHHHHHHHHHHHHHcCCC-EEEEECCCCC-CCCCcccccCCHHHHHHHHHHHHhccCCCEEEEe--C
Confidence 578999999877 899999999999988764 5556655421 110 00122 34556676 589988621 1
Q ss_pred CCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 129 LQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
| +..+ ...++..+.+.||||+.+
T Consensus 163 ---~-------------~~~~-~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 163 ---P-------------NVTD-IVEIARAAEEAGADGLTL 185 (296)
T ss_pred ---C-------------Cchh-HHHHHHHHHHcCCCEEEE
Confidence 0 1011 245677889999997655
No 127
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=92.69 E-value=0.75 Score=39.15 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcC-CCeEeeeCCcccHHHHhhh-ccccccCCC---------CCCCHHHHHHHHh-cCCeEEEeCCCCCCH
Q 027740 5 LKILEKVKIAYD-IPIVTDVHETVQCEEVGKV-ADIIQIPAF---------LCRQTDLLVAAAK-TGKIINIKKGQFCAS 72 (219)
Q Consensus 5 l~~L~~~~~~~G-i~~~tt~~d~~~~~~l~~~-vd~~kI~S~---------~~~n~~LL~~~a~-~gkPVilstG~~~t~ 72 (219)
+..+.+.+++.| ++++..+++++++..+.+. +|++.+... ...+.++++++.+ ++.||+..-|.. +.
T Consensus 111 ~~~~i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~-~~ 189 (219)
T cd04729 111 LAELIKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRIN-SP 189 (219)
T ss_pred HHHHHHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCC-CH
Confidence 455666667777 9999999999998888888 999876432 1235677888775 489999999988 89
Q ss_pred HHHHHHHH
Q 027740 73 SVMVNSAE 80 (219)
Q Consensus 73 ~ei~~A~e 80 (219)
+++..+.+
T Consensus 190 ~~~~~~l~ 197 (219)
T cd04729 190 EQAAKALE 197 (219)
T ss_pred HHHHHHHH
Confidence 88887654
No 128
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=92.64 E-value=7.5 Score=37.33 Aligned_cols=151 Identities=18% Similarity=0.218 Sum_probs=93.2
Q ss_pred HHHhhh-ccccccC--CCCCCCH-HHHHHHHhcCCeEEE--e--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC
Q 027740 30 EEVGKV-ADIIQIP--AFLCRQT-DLLVAAAKTGKIINI--K--KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY 101 (219)
Q Consensus 30 ~~l~~~-vd~~kI~--S~~~~n~-~LL~~~a~~gkPVil--s--tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~ 101 (219)
+...+. +|++.|. ..+..|. ..++.+-+.|+-+.+ + .+...+++-+..-++.+.+.|...|.|+.-.... .
T Consensus 103 ~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l-~ 181 (448)
T PRK12331 103 QKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGIL-T 181 (448)
T ss_pred HHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC-C
Confidence 444444 6655544 2234453 355666667876542 2 2333478888888888999999888888765432 2
Q ss_pred CCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC---
Q 027740 102 NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA--- 177 (219)
Q Consensus 102 ~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a--- 177 (219)
|. .+ ..-+..+|+ +++||.+ +.|.. .|. -..-+++|+.+||+ +|+.-..+=-.
T Consensus 182 P~-~v-~~lv~alk~~~~~pi~~-H~Hnt---------------~Gl---A~AN~laAieaGad--~vD~sv~glg~gaG 238 (448)
T PRK12331 182 PY-VA-YELVKRIKEAVTVPLEV-HTHAT---------------SGI---AEMTYLKAIEAGAD--IIDTAISPFAGGTS 238 (448)
T ss_pred HH-HH-HHHHHHHHHhcCCeEEE-EecCC---------------CCc---HHHHHHHHHHcCCC--EEEeeccccCCCcC
Confidence 21 12 245666777 8899999 88864 242 25567899999999 88887664311
Q ss_pred ----------C--CCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 178 ----------P--VDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 178 ----------~--~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
+ .....-++.+.|.++.+.++++++-.
T Consensus 239 N~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~r~~y 277 (448)
T PRK12331 239 QPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIRDHY 277 (448)
T ss_pred CHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 13334577777766655555554443
No 129
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=92.54 E-value=4.6 Score=35.69 Aligned_cols=137 Identities=18% Similarity=0.202 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhcCCCeEee--eCCcccHHHHhhh-ccccccCCCCCCC---HHHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTD--VHETVQCEEVGKV-ADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt--~~d~~~~~~l~~~-vd~~kI~S~~~~n---~~LL~~~a~~gkPVilstG~~~t~~ei~~ 77 (219)
++..++.+++...+|++.- +.++.+++...+. +|++-+....+.. ..|++++-+.|+-+++... +.+|+..
T Consensus 99 ~~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh---~~~E~~~ 175 (260)
T PRK00278 99 SLEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVH---DEEELER 175 (260)
T ss_pred CHHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHH
Confidence 4677888888899999973 3456677777777 8988888777664 4677888888999999886 8889877
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHH
Q 027740 78 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCI 154 (219)
Q Consensus 78 A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~ 154 (219)
|.+ .|..-|.+-+|. ......|+.....+.. . ..+++. -+.-. . +.-
T Consensus 176 A~~----~gadiIgin~rd----l~~~~~d~~~~~~l~~~~p~~~~vIa-egGI~----------------t-----~ed 225 (260)
T PRK00278 176 ALK----LGAPLIGINNRN----LKTFEVDLETTERLAPLIPSDRLVVS-ESGIF----------------T-----PED 225 (260)
T ss_pred HHH----cCCCEEEECCCC----cccccCCHHHHHHHHHhCCCCCEEEE-EeCCC----------------C-----HHH
Confidence 653 466533332221 1123356666666655 3 235443 11110 1 344
Q ss_pred HHHHHHcCCcEEEEeeecC
Q 027740 155 ARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 155 ~~aAvalGA~GlvIEkH~t 173 (219)
...+..+||+|++|=.-++
T Consensus 226 ~~~~~~~Gad~vlVGsaI~ 244 (260)
T PRK00278 226 LKRLAKAGADAVLVGESLM 244 (260)
T ss_pred HHHHHHcCCCEEEECHHHc
Confidence 5677788999998876654
No 130
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=92.54 E-value=12 Score=37.20 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=95.7
Q ss_pred HHHHhhh-ccccccCCC--CCCCH-HHHHHHHhcCCeE--EEe--CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 027740 29 CEEVGKV-ADIIQIPAF--LCRQT-DLLVAAAKTGKII--NIK--KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG 100 (219)
Q Consensus 29 ~~~l~~~-vd~~kI~S~--~~~n~-~LL~~~a~~gkPV--ils--tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~ 100 (219)
++...+. +|++-|... ++.|. ..++++-+.|+-+ .++ ...-.|++.+.+.++.+.+.|...|.|+.-....
T Consensus 103 v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l- 181 (593)
T PRK14040 103 VERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLL- 181 (593)
T ss_pred HHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCc-
Confidence 5555555 777766632 23332 3566666678863 233 2233388999999999999999888888765432
Q ss_pred CCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC--
Q 027740 101 YNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA-- 177 (219)
Q Consensus 101 ~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a-- 177 (219)
.| ..+ ..-+..+|+ +++||++ ++|.. .|. -..-.++|+.+||+ +|..-...=-.
T Consensus 182 ~P-~~~-~~lv~~lk~~~~~pi~~-H~Hnt---------------~Gl---A~An~laAieAGa~--~vD~ai~glG~~~ 238 (593)
T PRK14040 182 KP-YAA-YELVSRIKKRVDVPLHL-HCHAT---------------TGL---STATLLKAIEAGID--GVDTAISSMSMTY 238 (593)
T ss_pred CH-HHH-HHHHHHHHHhcCCeEEE-EECCC---------------Cch---HHHHHHHHHHcCCC--EEEeccccccccc
Confidence 12 112 245666777 8999999 88874 242 24557899999999 88775543211
Q ss_pred -----------C--CCCCCCCChHHHHHHHHHHHHHHHHhC
Q 027740 178 -----------P--VDGPTQWPLRNLEELLEELVAIAKVSK 205 (219)
Q Consensus 178 -----------~--~D~~~sl~p~el~~lv~~ir~i~~~lg 205 (219)
+ .+...-++++.|.++-+.++++.+...
T Consensus 239 Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~~~Y~ 279 (593)
T PRK14040 239 GHSATETLVATLEGTERDTGLDILKLEEIAAYFREVRKKYA 279 (593)
T ss_pred cchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence 1 133345777777776666666655443
No 131
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=92.43 E-value=5.1 Score=33.03 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~ 81 (219)
+-.+.+.+.|++++++++-.- ..+...++ +|-+-++..++.-... +..-..++.|..|.. +.+|+..|.
T Consensus 43 ~~a~~l~~~~~~~~~~liin~----~~~la~~~~~dGvHl~~~~~~~~~~-r~~~~~~~~ig~S~h---~~~e~~~a~-- 112 (180)
T PF02581_consen 43 ELARRLAELCQKYGVPLIIND----RVDLALELGADGVHLGQSDLPPAEA-RKLLGPDKIIGASCH---SLEEAREAE-- 112 (180)
T ss_dssp HHHHHHHHHHHHTTGCEEEES-----HHHHHHCT-SEEEEBTTSSSHHHH-HHHHTTTSEEEEEES---SHHHHHHHH--
T ss_pred HHHHHHHHHhhcceEEEEecC----CHHHHHhcCCCEEEecccccchHHh-hhhcccceEEEeecC---cHHHHHHhh--
Confidence 346788899999999887643 56666777 9999999988854443 333334666666654 889976654
Q ss_pred HHHcCCCcEEEEeecCC---CCCCCCCccchhHHHHHh-cCCCEEE
Q 027740 82 VRLAGNPNVMVCERGTM---FGYNDLIVDPRNLEWMRE-ANCPVVA 123 (219)
Q Consensus 82 i~~~Gn~~i~L~~cgs~---~~~~~~~~nl~~i~~lk~-~~~pV~~ 123 (219)
+.|...+.+-+.=.+ .++ ....+..+.++++ +.+||..
T Consensus 113 --~~g~dYv~~gpvf~T~sk~~~--~~~g~~~l~~~~~~~~~pv~A 154 (180)
T PF02581_consen 113 --ELGADYVFLGPVFPTSSKPGA--PPLGLDGLREIARASPIPVYA 154 (180)
T ss_dssp --HCTTSEEEEETSS--SSSSS---TTCHHHHHHHHHHHTSSCEEE
T ss_pred --hcCCCEEEECCccCCCCCccc--cccCHHHHHHHHHhCCCCEEE
Confidence 467766666554111 111 2345666777776 7899865
No 132
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=92.37 E-value=0.72 Score=40.61 Aligned_cols=155 Identities=14% Similarity=0.056 Sum_probs=92.5
Q ss_pred HHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 027740 8 LEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 86 (219)
Q Consensus 8 L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~G 86 (219)
|.+..++....++.++||..+...+++. +|.+.+++.... +..|.| +++.- |++|+...++.|.. +
T Consensus 4 ~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a--------~~~G~p---D~~~v-tl~em~~~~~~I~r-~ 70 (240)
T cd06556 4 LQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGM--------TVAGYD---DTLPY-PVNDVPYHVRAVRR-G 70 (240)
T ss_pred HHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHH--------HhcCCC---CCCCc-CHHHHHHHHHHHHh-h
Confidence 4444444566777799999999999998 999999996432 334777 55655 99999999998875 3
Q ss_pred CCc-EEEEeecCCCCCCCCCccchhHHHHHh---cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 027740 87 NPN-VMVCERGTMFGYNDLIVDPRNLEWMRE---ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 162 (219)
Q Consensus 87 n~~-i~L~~cgs~~~~~~~~~nl~~i~~lk~---~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalG 162 (219)
.+. .++...=+-| .. ....++...++ .+.- ++ |- | |..+++. ...++++.|
T Consensus 71 ~~~~pviaD~~~G~--g~--~~~~~~~~~~~l~~aGa~-gv---~i---------E-------D~~~~~~-~i~ai~~a~ 125 (240)
T cd06556 71 APLALIVADLPFGA--YG--APTAAFELAKTFMRAGAA-GV---KI---------E-------GGEWHIE-TLQMLTAAA 125 (240)
T ss_pred CCCCCEEEeCCCCC--Cc--CHHHHHHHHHHHHHcCCc-EE---EE---------c-------CcHHHHH-HHHHHHHcC
Confidence 432 4455543332 21 11233333333 3431 11 11 1 2222222 234556666
Q ss_pred CcEEEEeeecCCCCC----CC-CCCCCCChHHHHHHHHHHHHHHHH
Q 027740 163 VDGVFMEVHDDPLNA----PV-DGPTQWPLRNLEELLEELVAIAKV 203 (219)
Q Consensus 163 A~GlvIEkH~t~d~a----~~-D~~~sl~p~el~~lv~~ir~i~~~ 203 (219)
. +|=-|.+.... +. +..+-.+.+++++.++..+..+++
T Consensus 126 i---~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~A 168 (240)
T cd06556 126 V---PVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAPA 168 (240)
T ss_pred C---eEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHHc
Confidence 4 44478665321 11 333444677899999998888775
No 133
>PRK09875 putative hydrolase; Provisional
Probab=92.31 E-value=4.4 Score=36.63 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHh-cCCeEEEeCCCCC-----------CHHHHHHHH-H----HHHHcCCCcEEEEeecCCCC--CCCCCc
Q 027740 46 CRQTDLLVAAAK-TGKIINIKKGQFC-----------ASSVMVNSA-E----KVRLAGNPNVMVCERGTMFG--YNDLIV 106 (219)
Q Consensus 46 ~~n~~LL~~~a~-~gkPVilstG~~~-----------t~~ei~~A~-e----~i~~~Gn~~i~L~~cgs~~~--~~~~~~ 106 (219)
=+|..+|+++++ +|..|+.+||..- +.+|+..-+ + .|...|.+.-++-++|++++ .+.+.-
T Consensus 60 GRd~~~l~~is~~tgv~Iv~~TG~y~~~~~p~~~~~~~~e~la~~~i~ei~~Gi~gt~ikaGvIGeiG~~~~~it~~E~k 139 (292)
T PRK09875 60 GRNAQFMLDVMRETGINVVACTGYYQDAFFPEHVATRSVQELAQEMVDEIEQGIDGTELKAGIIAEIGSSEGKITPLEEK 139 (292)
T ss_pred CcCHHHHHHHHHHhCCcEEEcCcCCCCccCCHHHhcCCHHHHHHHHHHHHHHhhccCCCcccEEEEEecCCCCCCHHHHH
Confidence 357888998887 7999999999652 223322111 1 12223344455669999864 332222
Q ss_pred cchhHHHHHh-cCCCEEEcCCCC
Q 027740 107 DPRNLEWMRE-ANCPVVADVTHS 128 (219)
Q Consensus 107 nl~~i~~lk~-~~~pV~~ds~Hs 128 (219)
=+++...... +++||. .|+
T Consensus 140 vl~Aaa~a~~~TG~pi~---~Ht 159 (292)
T PRK09875 140 VFIAAALAHNQTGRPIS---THT 159 (292)
T ss_pred HHHHHHHHHHHHCCcEE---EcC
Confidence 2344444444 899995 565
No 134
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=92.31 E-value=5.5 Score=34.98 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeC--CCCC----------C--
Q 027740 7 ILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKK--GQFC----------A-- 71 (219)
Q Consensus 7 ~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilst--G~~~----------t-- 71 (219)
.++.+.++.++++.-+-++++-++...+. ++++-=-+..-.+-.+++-+++.|.|+++-. |... +
T Consensus 67 ~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~ 146 (258)
T cd00423 67 VLRALAGEPDVPISVDTFNAEVAEAALKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVD 146 (258)
T ss_pred HHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHH
Confidence 34444455599998899999888886666 6654333333223577888888999999864 3221 1
Q ss_pred --HHHHHHHHHHHHHcC--CCcEEEEeecCCCCCCCCCcc---chhHHHHHhc-CCCEEE
Q 027740 72 --SSVMVNSAEKVRLAG--NPNVMVCERGTMFGYNDLIVD---PRNLEWMREA-NCPVVA 123 (219)
Q Consensus 72 --~~ei~~A~e~i~~~G--n~~i~L~~cgs~~~~~~~~~n---l~~i~~lk~~-~~pV~~ 123 (219)
++.+...++.+.+.| .++| ++..|..|.. ...-| ++.+..++++ ++|+.+
T Consensus 147 ~~~~~~~~~i~~~~~~Gi~~~~I-ilDPg~g~~k-~~~~~~~~l~~i~~~~~~~g~Pil~ 204 (258)
T cd00423 147 EVVEFLEERVEAATEAGIPPEDI-ILDPGIGFGK-TEEHNLELLRRLDAFRELPGLPLLL 204 (258)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHE-EEeCCCCccC-CHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 355556666778888 4455 6777776532 11123 3455555666 899765
No 135
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=92.06 E-value=4.3 Score=34.03 Aligned_cols=156 Identities=13% Similarity=0.062 Sum_probs=85.7
Q ss_pred HHHHHHHHHh--cCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHH
Q 027740 5 LKILEKVKIA--YDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 5 l~~L~~~~~~--~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~-~gkPVilstG~~~t~~ei~~A~e 80 (219)
.+.|.+.+.. .++.++....-.+-.+.+.++ +|++|+++.+ ..+.++++-+ .+.+++..-|.+ +-.+... ..
T Consensus 40 a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e--~~~~~~~l~~~~~~~~i~~i~~~-~~~~~~~-~~ 115 (203)
T cd00405 40 AREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE--SPEYCAQLRARLGLPVIKAIRVK-DEEDLEK-AA 115 (203)
T ss_pred HHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC--CHHHHHHHHhhcCCcEEEEEecC-ChhhHHH-hh
Confidence 3456666666 566665444322222445566 8999999876 3445555544 477888555555 4434322 11
Q ss_pred HHHHcCCCcEEEEeecCC--CCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 81 KVRLAGNPNVMVCERGTM--FGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 81 ~i~~~Gn~~i~L~~cgs~--~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
.. ..| -+.+|+...+. ++-.....|+..+..++ ..+||+.- ||.. +.-...+
T Consensus 116 ~~-~~~-aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~-~~~Pvila--------------------GGI~---~~Nv~~~ 169 (203)
T cd00405 116 AY-AGE-VDAILLDSKSGGGGGGTGKTFDWSLLRGLA-SRKPVILA--------------------GGLT---PDNVAEA 169 (203)
T ss_pred hc-ccc-CCEEEEcCCCCCCCCCCcceEChHHhhccc-cCCCEEEE--------------------CCCC---hHHHHHH
Confidence 11 123 35677776543 11012346666655544 57898772 2321 2223455
Q ss_pred HHcC-CcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHH
Q 027740 159 IAVG-VDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEE 196 (219)
Q Consensus 159 valG-A~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ 196 (219)
++.| ++|+-+=+.+.-. +-.-+++.++++++.
T Consensus 170 i~~~~~~gvdv~S~ie~~------pg~kd~~ki~~~~~~ 202 (203)
T cd00405 170 IRLVRPYGVDVSSGVETS------PGIKDPEKIRAFIEA 202 (203)
T ss_pred HHhcCCCEEEcCCcccCC------CCCcCHHHHHHHHHh
Confidence 6667 8887776664422 333677888888764
No 136
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=92.05 E-value=6 Score=32.62 Aligned_cols=132 Identities=18% Similarity=0.175 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 82 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i 82 (219)
-+..+.+.|+++|++++-.- .++.+.++ ++-+-++..++.-.. .+..-..++.|.+| .. |.+|...|.+
T Consensus 45 ~~~~l~~~~~~~~~~l~i~~----~~~la~~~g~~GvHl~~~~~~~~~-~r~~~~~~~~ig~s--~h-~~~e~~~a~~-- 114 (196)
T TIGR00693 45 LAEKLQELCRRYGVPFIVND----RVDLALALGADGVHLGQDDLPASE-ARALLGPDKIIGVS--TH-NLEELAEAEA-- 114 (196)
T ss_pred HHHHHHHHHHHhCCeEEEEC----HHHHHHHcCCCEEecCcccCCHHH-HHHhcCCCCEEEEe--CC-CHHHHHHHhH--
Confidence 46778889999999988843 46666677 787888876654333 23222334555555 44 8888776543
Q ss_pred HHcCCCcEEEEeecCCCCCC---C--CCccchhHHHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHH
Q 027740 83 RLAGNPNVMVCERGTMFGYN---D--LIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIA 155 (219)
Q Consensus 83 ~~~Gn~~i~L~~cgs~~~~~---~--~~~nl~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~ 155 (219)
.|..-+.+-+- |+.. . ...++..+..+++ + ++||..- ||.. ..-.
T Consensus 115 --~g~dyi~~~~v---~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~--------------------GGI~---~~~~ 166 (196)
T TIGR00693 115 --EGADYIGFGPI---FPTPTKKDPAPPAGVELLREIAATSIDIPIVAI--------------------GGIT---LENA 166 (196)
T ss_pred --cCCCEEEECCc---cCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEE--------------------CCcC---HHHH
Confidence 46554443221 2211 1 1235667777765 4 5888661 2432 2334
Q ss_pred HHHHHcCCcEEEEeeecC
Q 027740 156 RTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 156 ~aAvalGA~GlvIEkH~t 173 (219)
..+...|++|+.+-.-++
T Consensus 167 ~~~~~~G~~gva~~~~i~ 184 (196)
T TIGR00693 167 AEVLAAGADGVAVVSAIM 184 (196)
T ss_pred HHHHHcCCCEEEEhHHhh
Confidence 466788999999877655
No 137
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.98 E-value=0.73 Score=44.59 Aligned_cols=118 Identities=17% Similarity=0.177 Sum_probs=68.7
Q ss_pred CCcccHHHHhhh-ccccccCCCC---CCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE-----
Q 027740 24 HETVQCEEVGKV-ADIIQIPAFL---CRQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV----- 92 (219)
Q Consensus 24 ~d~~~~~~l~~~-vd~~kI~S~~---~~n~~LL~~~a~~--gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L----- 92 (219)
.+.+.++.+.+. +|++-|-+.+ ....+.++++-+. +.||+..+. .|.++...+++ .|..-|.+
T Consensus 241 ~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V--~t~~~a~~~~~----aGad~I~vg~g~G 314 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNV--VTADQAKNLID----AGADGLRIGMGSG 314 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCc--CCHHHHHHHHH----cCCCEEEECCcCC
Confidence 334555556666 7887776632 2235678888775 578777444 46888777654 57764433
Q ss_pred EeecCC----CCCCCCCccchhHHHH----HhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCc
Q 027740 93 CERGTM----FGYNDLIVDPRNLEWM----REANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 164 (219)
Q Consensus 93 ~~cgs~----~~~~~~~~nl~~i~~l----k~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~ 164 (219)
..|.+. .+.| .+.++... +++++||+.|. |.+. +.-..-|.++||+
T Consensus 315 s~~~t~~~~~~g~p----~~~ai~~~~~~~~~~~v~vIadG--------------------Gi~~--~~di~kAla~GA~ 368 (495)
T PTZ00314 315 SICITQEVCAVGRP----QASAVYHVARYARERGVPCIADG--------------------GIKN--SGDICKALALGAD 368 (495)
T ss_pred cccccchhccCCCC----hHHHHHHHHHHHhhcCCeEEecC--------------------CCCC--HHHHHHHHHcCCC
Confidence 123332 1223 23444333 23689998752 2111 2334578999999
Q ss_pred EEEEeeecC
Q 027740 165 GVFMEVHDD 173 (219)
Q Consensus 165 GlvIEkH~t 173 (219)
++|+=.=|+
T Consensus 369 ~Vm~G~~~a 377 (495)
T PTZ00314 369 CVMLGSLLA 377 (495)
T ss_pred EEEECchhc
Confidence 999876554
No 138
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=91.90 E-value=0.6 Score=42.44 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh---cc-ccccCCCCC--CCHHHHHHHHhcC--CeEEEeCCCCCCHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV---AD-IIQIPAFLC--RQTDLLVAAAKTG--KIINIKKGQFCASSVMV 76 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~---vd-~~kI~S~~~--~n~~LL~~~a~~g--kPVilstG~~~t~~ei~ 76 (219)
+....+.++++.|..+=+||++++.+-..++ +. -.||-+.|+ +|...++..-+.+ --++||-.+.+|+.|..
T Consensus 139 id~y~~li~~YPIvsIEDpf~edD~e~w~~lt~~~g~~~~iVGDDl~vTn~~ri~~~i~~~~~na~llK~NQigTvte~l 218 (295)
T PF00113_consen 139 IDYYKDLIKKYPIVSIEDPFDEDDWEGWAKLTKRLGDKIQIVGDDLFVTNPKRIKKGIEKKACNALLLKPNQIGTVTETL 218 (295)
T ss_dssp HHHHHHHHHHS-EEEEESSS-TT-HHHHHHHHHHHTTTSEEEESTTTTT-HHHHHHHHHCT--SEEEE-HHHHSSHHHHH
T ss_pred HHHHHHHHHhcCeEEEEccccccchHHHHHHHHhhhcceeeecccccccchhhhhccchhhhccchhhhhhhhHHHHHHH
Confidence 5678888999999889999999998877766 32 344444444 5888888876544 48999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEeecC
Q 027740 77 NSAEKVRLAGNPNVMVCERGT 97 (219)
Q Consensus 77 ~A~e~i~~~Gn~~i~L~~cgs 97 (219)
++++..++.|- .+++.||..
T Consensus 219 ea~~~a~~~g~-~~vvS~rsg 238 (295)
T PF00113_consen 219 EAVKLAKSAGW-GVVVSHRSG 238 (295)
T ss_dssp HHHHHHHHTT--EEEEE--SS
T ss_pred HHHHHHHHCCc-eeeccCCCC
Confidence 99999998885 588889854
No 139
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=91.89 E-value=4.4 Score=39.19 Aligned_cols=177 Identities=15% Similarity=0.125 Sum_probs=107.8
Q ss_pred HHHHHHHHHHhcCCCeEe-------eeCCccc-----HHHHhhh-ccccccCCC--CCCC-HHHHHHHHhcCCeEEEeCC
Q 027740 4 GLKILEKVKIAYDIPIVT-------DVHETVQ-----CEEVGKV-ADIIQIPAF--LCRQ-TDLLVAAAKTGKIINIKKG 67 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~t-------t~~d~~~-----~~~l~~~-vd~~kI~S~--~~~n-~~LL~~~a~~gkPVilstG 67 (219)
-|+.+++...+..+..+. ....+++ ++...+. +|++-|... ++.| ...++++.+.|+-+.+.-+
T Consensus 74 rlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~ 153 (468)
T PRK12581 74 RLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIA 153 (468)
T ss_pred HHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEE
Confidence 355555555444443333 3344455 5555555 888877764 2334 2445666667876544333
Q ss_pred CC----CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCc
Q 027740 68 QF----CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGV 142 (219)
Q Consensus 68 ~~----~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~ 142 (219)
.. .|++=+...++.+.+.|...|.|+.-.... .|. .+ -.-+..+|+ .++||++ +.|..
T Consensus 154 yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l-~P~-~v-~~Lv~alk~~~~~pi~~-H~Hnt------------- 216 (468)
T PRK12581 154 YTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGIL-TPK-AA-KELVSGIKAMTNLPLIV-HTHAT------------- 216 (468)
T ss_pred EEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCc-CHH-HH-HHHHHHHHhccCCeEEE-EeCCC-------------
Confidence 32 256667888888888999888888765532 221 12 244556677 7899999 88874
Q ss_pred cCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC-------------C--CCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 143 ASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA-------------P--VDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 143 ~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a-------------~--~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
.|. -..-.++|+.+||+ +|+.-..+=-. + .+...-++++.|.++-+.++++++..
T Consensus 217 --~Gl---A~An~laAieAGad--~vD~ai~g~g~gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~y 286 (468)
T PRK12581 217 --SGI---SQMTYLAAVEAGAD--RIDTALSPFSEGTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQKY 286 (468)
T ss_pred --Ccc---HHHHHHHHHHcCCC--EEEeeccccCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHh
Confidence 242 24557899999999 88876654211 1 14455677887777766666665554
No 140
>PRK06801 hypothetical protein; Provisional
Probab=91.85 E-value=3.1 Score=37.65 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=67.8
Q ss_pred ccccccCCCCCCCHHHHH----HHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCccchh
Q 027740 36 ADIIQIPAFLCRQTDLLV----AAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRN 110 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL~----~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~~~~nl~~ 110 (219)
-.-|-||++++.|++.++ ++-+++.||||..... ... | +++ .=...
T Consensus 15 ~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~-~~~-------------------------~~~~~---~~~~~ 65 (286)
T PRK06801 15 KHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEV-HFK-------------------------YISLE---SLVEA 65 (286)
T ss_pred HCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcc-hhh-------------------------cCCHH---HHHHH
Confidence 456788999999976554 4445688888877665 210 1 111 01122
Q ss_pred HHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHH
Q 027740 111 LEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRN 189 (219)
Q Consensus 111 i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~e 189 (219)
+..+.+ ..+||.+-=||.. . ......|+..|++.+|+ |++ .++++|
T Consensus 66 ~~~~a~~~~vpV~lHlDH~~----------------~-----~e~i~~Ai~~GftSVm~-----------D~S-~l~~ee 112 (286)
T PRK06801 66 VKFEAARHDIPVVLNLDHGL----------------H-----FEAVVRALRLGFSSVMF-----------DGS-TLEYEE 112 (286)
T ss_pred HHHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHhCCcEEEE-----------cCC-CCCHHH
Confidence 333444 7899999889973 2 45677899999998888 332 245566
Q ss_pred HHHHHHHHHHHHHHhC
Q 027740 190 LEELLEELVAIAKVSK 205 (219)
Q Consensus 190 l~~lv~~ir~i~~~lg 205 (219)
.-++.+++.++....|
T Consensus 113 Ni~~t~~v~~~a~~~g 128 (286)
T PRK06801 113 NVRQTREVVKMCHAVG 128 (286)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 6556666666555554
No 141
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=91.80 E-value=1 Score=40.22 Aligned_cols=91 Identities=20% Similarity=0.206 Sum_probs=56.3
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHcC-CCcEEEEeecCC---C-CCC---CCCccchhHHHHHh-cCCCEEEcCCC
Q 027740 57 KTGKIINIKKGQFCASSVMVNSAEKVRLAG-NPNVMVCERGTM---F-GYN---DLIVDPRNLEWMRE-ANCPVVADVTH 127 (219)
Q Consensus 57 ~~gkPVilstG~~~t~~ei~~A~e~i~~~G-n~~i~L~~cgs~---~-~~~---~~~~nl~~i~~lk~-~~~pV~~ds~H 127 (219)
+.++||++|-+.. +.++|..+++.+...| .. .+=+.+++- . ++. +.+.-...+..+|+ .++||.+--+-
T Consensus 89 ~~~~p~i~si~g~-~~~~~~~~a~~~~~aG~~D-~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 166 (301)
T PRK07259 89 EFDTPIIANVAGS-TEEEYAEVAEKLSKAPNVD-AIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP 166 (301)
T ss_pred ccCCcEEEEeccC-CHHHHHHHHHHHhccCCcC-EEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4579999999877 8999999999999888 54 443333221 1 010 01112234555676 68898873221
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 128 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 128 s~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
+. .+ ...++..+.+.|+||+.+
T Consensus 167 ~~------------------~~-~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 167 NV------------------TD-IVEIAKAAEEAGADGLSL 188 (301)
T ss_pred Cc------------------hh-HHHHHHHHHHcCCCEEEE
Confidence 11 11 145677889999997654
No 142
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=91.69 E-value=5.1 Score=35.18 Aligned_cols=113 Identities=14% Similarity=0.025 Sum_probs=75.4
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEe----CC----------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIK----KG---------- 67 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVils----tG---------- 67 (219)
+..+++.+++. +++.. =+.+.++++.+-+. ++..-|||.-++|.++++++++.+.-+++| .|
T Consensus 63 ~~~i~~i~~~~-~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~ 141 (241)
T PRK14114 63 LPVLEKLSEFA-EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAE 141 (241)
T ss_pred HHHHHHHHhhc-CcEEEecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeec
Confidence 45677777765 44433 67888888888888 998899999999999999997765335553 22
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEE
Q 027740 68 QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVA 123 (219)
Q Consensus 68 ~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ 123 (219)
...++.| .++.+...|...+++..=..- +.- .=.|+..+..+++ .++||++
T Consensus 142 ~~~~~~e---~~~~~~~~g~~~ii~tdI~rd-Gt~-~G~d~el~~~l~~~~~~pvia 193 (241)
T PRK14114 142 EEIDPVS---LLKRLKEYGLEEIVHTEIEKD-GTL-QEHDFSLTRKIAIEAEVKVFA 193 (241)
T ss_pred CCCCHHH---HHHHHHhcCCCEEEEEeechh-hcC-CCcCHHHHHHHHHHCCCCEEE
Confidence 1223333 445566778877766532211 111 1247778888887 8999987
No 143
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=91.63 E-value=2.6 Score=39.57 Aligned_cols=154 Identities=12% Similarity=0.046 Sum_probs=99.0
Q ss_pred HHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCC------CCCHHHHHHHHhcC-CeEEEe----CCCCCCHHHHHHH
Q 027740 10 KVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFL------CRQTDLLVAAAKTG-KIINIK----KGQFCASSVMVNS 78 (219)
Q Consensus 10 ~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~------~~n~~LL~~~a~~g-kPVils----tG~~~t~~ei~~A 78 (219)
++++=.|......+-+-.+.-.++ ...+.|+.+| .+...=...+...| +||++- |.+. +++.++.|
T Consensus 42 ~~ae~~G~k~ava~~sgT~AL~la--L~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~ni-d~~~ie~a 118 (374)
T COG0399 42 AFAEYLGVKYAVAVSSGTAALHLA--LLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNI-DPDLIEAA 118 (374)
T ss_pred HHHHHhCCCeEEEecChHHHHHHH--HHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCC-CHHHHHHH
Confidence 455667888888887777665544 2222377775 33444455555666 899985 4554 88888887
Q ss_pred HHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHH
Q 027740 79 AEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIART 157 (219)
Q Consensus 79 ~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~a 157 (219)
+.-- -+=|+..|= |+.+ +|+.+|..+.+ ++++|+-|+.|+. |- ...
T Consensus 119 It~~----tKAIipVhl---~G~~---~dm~~i~~la~~~~l~vIEDaAqa~----------------Ga-------~y~ 165 (374)
T COG0399 119 ITPR----TKAIIPVHL---AGQP---CDMDAIMALAKRHGLPVIEDAAQAH----------------GA-------TYK 165 (374)
T ss_pred cccC----CeEEEEehh---ccCC---CCHHHHHHHHHHcCCeEEEEcchhc----------------cC-------eec
Confidence 6522 334666663 3333 69999999987 9999999999996 21 112
Q ss_pred HHHcCCcEEEEeeecCCCCCCC--C-CCCCCChHHHHHHHHHHHH
Q 027740 158 AIAVGVDGVFMEVHDDPLNAPV--D-GPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 158 AvalGA~GlvIEkH~t~d~a~~--D-~~~sl~p~el~~lv~~ir~ 199 (219)
....|.-|-+--.-|.+.|++. + +..-.+-++|.+.++.+|.
T Consensus 166 gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~ 210 (374)
T COG0399 166 GKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRN 210 (374)
T ss_pred CcccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHH
Confidence 2255666668888999999984 3 3333344566555555443
No 144
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=91.49 E-value=9.6 Score=36.53 Aligned_cols=136 Identities=21% Similarity=0.205 Sum_probs=93.0
Q ss_pred CCCCCHHH-HHHHHhcCCeEE----EeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCCccchhHHHHHh-
Q 027740 44 FLCRQTDL-LVAAAKTGKIIN----IKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMRE- 116 (219)
Q Consensus 44 ~~~~n~~L-L~~~a~~gkPVi----lstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~-~~~~~~~~nl~~i~~lk~- 116 (219)
.|.+|... ++++.+.|.-+. .-+....|++-|..-++.+.+-|...|++=.-... -|+. -..-+..+|+
T Consensus 122 ND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~----ayelVk~iK~~ 197 (472)
T COG5016 122 NDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYE----AYELVKAIKKE 197 (472)
T ss_pred cchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHH----HHHHHHHHHHh
Confidence 35666543 556666776443 34556669999999999999999988877664332 1332 3455777888
Q ss_pred cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCC-------------CC--CCC
Q 027740 117 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN-------------AP--VDG 181 (219)
Q Consensus 117 ~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~-------------a~--~D~ 181 (219)
+++||-+ ++|.. +|.. ...-++|+.+|+| +|..-..|=. ++ .+.
T Consensus 198 ~~~pv~l-HtH~T---------------sG~a---~m~ylkAvEAGvD--~iDTAisp~S~gtsqP~tEtmv~aL~gt~y 256 (472)
T COG5016 198 LPVPVEL-HTHAT---------------SGMA---EMTYLKAVEAGVD--GIDTAISPLSGGTSQPATETMVAALRGTGY 256 (472)
T ss_pred cCCeeEE-ecccc---------------cchH---HHHHHHHHHhCcc--hhhhhhccccCCCCCCcHHHHHHHhcCCCC
Confidence 9999998 89984 4632 3345689999999 7776544432 12 155
Q ss_pred CCCCChHHHHHHHHHHHHHHHHh
Q 027740 182 PTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 182 ~~sl~p~el~~lv~~ir~i~~~l 204 (219)
..-++.+.+++..+..+++++-.
T Consensus 257 Dtgld~~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 257 DTGLDLELLEEIAEYFREVRKKY 279 (472)
T ss_pred CccccHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888777654
No 145
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=91.48 E-value=1.4 Score=40.19 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=56.3
Q ss_pred hcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------CCCCCCccchhHHHHHh-cCCCEEEcCCCCC
Q 027740 57 KTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------GYNDLIVDPRNLEWMRE-ANCPVVADVTHSL 129 (219)
Q Consensus 57 ~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~------~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~ 129 (219)
+.++||+++-+.. +.+||..+++.+...|.. .+-++++... +....+.-...+..+++ .++||.+--+
T Consensus 99 ~~~~pvi~sI~g~-~~~e~~~~a~~~~~agad-~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~--- 173 (334)
T PRK07565 99 AVDIPVIASLNGS-SAGGWVDYARQIEQAGAD-ALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLS--- 173 (334)
T ss_pred hcCCcEEEEeccC-CHHHHHHHHHHHHHcCCC-EEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeC---
Confidence 3478999999887 999999999999888854 4444443210 00000001234555666 6899987311
Q ss_pred CCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 130 QQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
| +. .-+..++.++...|+||+++
T Consensus 174 --p-------------~~-~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 174 --P-------------YF-SNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred --C-------------Cc-hhHHHHHHHHHHcCCCeEEE
Confidence 0 10 11246677888999998655
No 146
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=91.45 E-value=0.65 Score=41.21 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCH----HHHHHHHh---cCCeEEEeCCCCCCHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQT----DLLVAAAK---TGKIINIKKGQFCASSVM 75 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~----~LL~~~a~---~gkPVilstG~~~t~~ei 75 (219)
-|+.|.++|+++|+.++.|+|+.++++...+. .+++-|-.||+..+ .--..++. .+..++-..|.. |.+|+
T Consensus 139 ~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~~~L~~~ip~~~~~IsESGI~-t~~d~ 217 (247)
T PRK13957 139 QIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLVEEVAAFLPPNIVKVGESGIE-SRSDL 217 (247)
T ss_pred HHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHHHHHHhhCCCCcEEEEcCCCC-CHHHH
Confidence 48899999999999999999999999998888 99999999988742 21222222 355666679999 99998
Q ss_pred HHHHH
Q 027740 76 VNSAE 80 (219)
Q Consensus 76 ~~A~e 80 (219)
....+
T Consensus 218 ~~l~~ 222 (247)
T PRK13957 218 DKFRK 222 (247)
T ss_pred HHHHH
Confidence 87543
No 147
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=91.45 E-value=2 Score=41.73 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=77.4
Q ss_pred eeeCCcccHHHHhhh-ccccccCCCCCCCH---HHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-e
Q 027740 21 TDVHETVQCEEVGKV-ADIIQIPAFLCRQT---DLLVAAAKT-GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-E 94 (219)
Q Consensus 21 tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~---~LL~~~a~~-gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~-~ 94 (219)
+.+.+.+-++.|.+. +|++-|-+.+=.+. ++++++-+. ....++..+.. |.++.+.+++ .|..-|.+. |
T Consensus 245 ~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~-t~e~a~~a~~----aGaD~i~vg~g 319 (505)
T PLN02274 245 TRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVV-TMYQAQNLIQ----AGVDGLRVGMG 319 (505)
T ss_pred CCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCC-CHHHHHHHHH----cCcCEEEECCC
Confidence 345667788888887 99998887654443 577777764 22333444556 8999887765 677655442 3
Q ss_pred ec----CCC----CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcE
Q 027740 95 RG----TMF----GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 165 (219)
Q Consensus 95 cg----s~~----~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~G 165 (219)
.| +.. +++.. -++..++.+.+ +++||+.|.- .+. ..-...|.++||++
T Consensus 320 ~G~~~~t~~~~~~g~~~~-~~i~~~~~~~~~~~vpVIadGG--------------------I~~--~~di~kAla~GA~~ 376 (505)
T PLN02274 320 SGSICTTQEVCAVGRGQA-TAVYKVASIAAQHGVPVIADGG--------------------ISN--SGHIVKALTLGAST 376 (505)
T ss_pred CCccccCccccccCCCcc-cHHHHHHHHHHhcCCeEEEeCC--------------------CCC--HHHHHHHHHcCCCE
Confidence 33 221 12211 12333555555 7899998632 211 23456889999999
Q ss_pred EEEeeecCC
Q 027740 166 VFMEVHDDP 174 (219)
Q Consensus 166 lvIEkH~t~ 174 (219)
+|+=.-|+-
T Consensus 377 V~vGs~~~~ 385 (505)
T PLN02274 377 VMMGSFLAG 385 (505)
T ss_pred EEEchhhcc
Confidence 999887764
No 148
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=91.44 E-value=10 Score=35.05 Aligned_cols=129 Identities=16% Similarity=0.056 Sum_probs=70.2
Q ss_pred CHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh------cCCC
Q 027740 48 QTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE------ANCP 120 (219)
Q Consensus 48 n~~LL~~~a~-~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~------~~~p 120 (219)
..+.++.+.+ ++.||++| |.. +.++...+ .+.|..-|++-..|... .+...--..+++.++. -.+|
T Consensus 201 ~~~~i~~l~~~~~~PvivK-gv~-~~~dA~~a----~~~G~d~I~vsnhgG~~-~d~~~~~~~~L~~i~~~~~~~~~~~~ 273 (344)
T cd02922 201 TWDDIKWLRKHTKLPIVLK-GVQ-TVEDAVLA----AEYGVDGIVLSNHGGRQ-LDTAPAPIEVLLEIRKHCPEVFDKIE 273 (344)
T ss_pred CHHHHHHHHHhcCCcEEEE-cCC-CHHHHHHH----HHcCCCEEEEECCCccc-CCCCCCHHHHHHHHHHHHHHhCCCce
Confidence 4455666655 67999999 555 77776655 45788777766554331 1100001223443332 1488
Q ss_pred EEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 027740 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 121 V~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i 200 (219)
|+.|. |.|. ..-...|+++||+++.|=.-|--.-. ..+ ..---.-+..+.++++.+
T Consensus 274 vi~~G--------------------GIr~--G~Dv~kalaLGA~aV~iG~~~l~~l~-~~G-~~gv~~~l~~l~~EL~~~ 329 (344)
T cd02922 274 VYVDG--------------------GVRR--GTDVLKALCLGAKAVGLGRPFLYALS-AYG-EEGVEKAIQILKDEIETT 329 (344)
T ss_pred EEEeC--------------------CCCC--HHHHHHHHHcCCCEEEECHHHHHHHh-hcc-HHHHHHHHHHHHHHHHHH
Confidence 88862 3222 12345789999998888754322111 011 111112456666777777
Q ss_pred HHHhCCC
Q 027740 201 AKVSKGK 207 (219)
Q Consensus 201 ~~~lg~~ 207 (219)
-..+|..
T Consensus 330 m~l~G~~ 336 (344)
T cd02922 330 MRLLGVT 336 (344)
T ss_pred HHHhCCC
Confidence 7777753
No 149
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=91.36 E-value=1 Score=42.31 Aligned_cols=87 Identities=21% Similarity=0.158 Sum_probs=54.6
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE-EeecCCCCCCCC-------CccchhH----HHHHh-cCCCEEE--
Q 027740 59 GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV-CERGTMFGYNDL-------IVDPRNL----EWMRE-ANCPVVA-- 123 (219)
Q Consensus 59 gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L-~~cgs~~~~~~~-------~~nl~~i----~~lk~-~~~pV~~-- 123 (219)
.+|||.|-....+.+||...++.+.+.|..-+-| +-| .+.+.+ .-|...+ .++|+ ..+||.+
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSC---Pn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSC---PHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCC---CCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEe
Confidence 4799999954238999999999998887543333 111 111100 0133333 44566 6889876
Q ss_pred cCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 124 ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
.|+.+ + +..++.+|...||||+++=
T Consensus 190 sPn~t--------------------~-i~~ia~aa~~~Gadgi~li 214 (385)
T PLN02495 190 TPNIT--------------------D-ITQPARVALKSGCEGVAAI 214 (385)
T ss_pred CCChh--------------------h-HHHHHHHHHHhCCCEEEEe
Confidence 22211 1 3678889999999998764
No 150
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=91.25 E-value=13 Score=34.85 Aligned_cols=142 Identities=14% Similarity=0.092 Sum_probs=79.0
Q ss_pred HHHHHHHHhc-CCCeEeeeCCcccHHHHhh-------h-cccccc-------------CCCCCCCHHH----HHHHHh-c
Q 027740 6 KILEKVKIAY-DIPIVTDVHETVQCEEVGK-------V-ADIIQI-------------PAFLCRQTDL----LVAAAK-T 58 (219)
Q Consensus 6 ~~L~~~~~~~-Gi~~~tt~~d~~~~~~l~~-------~-vd~~kI-------------~S~~~~n~~L----L~~~a~-~ 58 (219)
+.+++..+.. +.+++..++-..+.+.+.+ . +|++-| |+....+.++ ++++.+ +
T Consensus 88 ~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~ 167 (420)
T PRK08318 88 REIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS 167 (420)
T ss_pred HHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc
Confidence 3444544444 4778888776523332222 2 333332 1223355444 444433 5
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC--------------------C---C-CCCCCCccchhHHHH
Q 027740 59 GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT--------------------M---F-GYNDLIVDPRNLEWM 114 (219)
Q Consensus 59 gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs--------------------~---~-~~~~~~~nl~~i~~l 114 (219)
.+||++|-... ..++...++.+.+.|-.-+++..+.. . | +.....+.++.+..+
T Consensus 168 ~~Pv~vKl~p~--~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~ 245 (420)
T PRK08318 168 RLPVIVKLTPN--ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEI 245 (420)
T ss_pred CCcEEEEcCCC--cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHH
Confidence 79999999854 55677777777788877777532221 1 1 111123467888888
Q ss_pred Hh-c---CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 115 RE-A---NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 115 k~-~---~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
++ . ++||+.... ...+ .-+...+.+||++++|=+-
T Consensus 246 ~~~~~~~~ipIig~GG----------------I~s~------~da~e~i~aGA~~Vqi~ta 284 (420)
T PRK08318 246 ARDPETRGLPISGIGG----------------IETW------RDAAEFILLGAGTVQVCTA 284 (420)
T ss_pred HhccccCCCCEEeecC----------------cCCH------HHHHHHHHhCCChheeeee
Confidence 77 5 688876321 1112 2344556799998777554
No 151
>PLN02826 dihydroorotate dehydrogenase
Probab=91.23 E-value=4.5 Score=38.36 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=73.5
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-----------------CCCCCCccchhHHHHHh-c--
Q 027740 58 TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-----------------GYNDLIVDPRNLEWMRE-A-- 117 (219)
Q Consensus 58 ~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-----------------~~~~~~~nl~~i~~lk~-~-- 117 (219)
..+||++|=+...+.+++...++.+.+.|..-|++....... +.+-...-++.+..+++ .
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 368999999988888899999999999998888888754311 11111223555666655 4
Q ss_pred CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCC-ChHHHHHHHHH
Q 027740 118 NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQW-PLRNLEELLEE 196 (219)
Q Consensus 118 ~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl-~p~el~~lv~~ 196 (219)
.+||+.+ |+...| .-+...+.+||+ .+...- .... .|.-++++.++
T Consensus 341 ~ipIIgv----------------GGI~sg------~Da~e~i~AGAs--~VQv~T---------a~~~~Gp~~i~~I~~e 387 (409)
T PLN02826 341 KIPLVGC----------------GGVSSG------EDAYKKIRAGAS--LVQLYT---------AFAYEGPALIPRIKAE 387 (409)
T ss_pred CCcEEEE----------------CCCCCH------HHHHHHHHhCCC--eeeecH---------HHHhcCHHHHHHHHHH
Confidence 6888763 112222 346678899999 565541 1112 36677778777
Q ss_pred HHHHHHHhC
Q 027740 197 LVAIAKVSK 205 (219)
Q Consensus 197 ir~i~~~lg 205 (219)
+.+.-+..|
T Consensus 388 L~~~l~~~G 396 (409)
T PLN02826 388 LAACLERDG 396 (409)
T ss_pred HHHHHHHcC
Confidence 776544434
No 152
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=91.22 E-value=6 Score=34.98 Aligned_cols=117 Identities=21% Similarity=0.186 Sum_probs=69.7
Q ss_pred HHHHHHHHHh-cCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeC--CCCCC---------
Q 027740 5 LKILEKVKIA-YDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKK--GQFCA--------- 71 (219)
Q Consensus 5 l~~L~~~~~~-~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilst--G~~~t--------- 71 (219)
+.++-+..++ .++++.-+-++++.++...+. ++++-=.+..- .-.++..+++.|.|+++-. |...+
T Consensus 63 l~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~iINsis~~~-~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~ 141 (257)
T TIGR01496 63 VVPVIKALRDQPDVPISVDTYRAEVARAALEAGADIINDVSGGQ-DPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYED 141 (257)
T ss_pred HHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCC-CchhHHHHHHcCCcEEEEeCCCCCcccccCCCccc
Confidence 4444444444 499999999999999987776 66644333331 4457777889999998832 43223
Q ss_pred -HH----HHHHHHHHHHHcCCC-cEEEEeecCCCCCCCCCccc---hhHHHHHhcCCCEEE
Q 027740 72 -SS----VMVNSAEKVRLAGNP-NVMVCERGTMFGYNDLIVDP---RNLEWMREANCPVVA 123 (219)
Q Consensus 72 -~~----ei~~A~e~i~~~Gn~-~i~L~~cgs~~~~~~~~~nl---~~i~~lk~~~~pV~~ 123 (219)
.+ .+...++.+.+.|-+ +=+++..|.-|.- ..+-++ +++..+|++++|+.+
T Consensus 142 ~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~k-s~~~~~~~l~~i~~l~~~~~p~l~ 201 (257)
T TIGR01496 142 VVEEVLRFLEARAEELVAAGVAAERIILDPGIGFGK-TPEHNLELLKHLEEFVALGYPLLV 201 (257)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCccc-CHHHHHHHHHHHHHHHhCCCcEEE
Confidence 22 244555667778863 2335565665421 111233 445555556788765
No 153
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=91.18 E-value=4.1 Score=35.64 Aligned_cols=141 Identities=12% Similarity=0.018 Sum_probs=83.7
Q ss_pred HHHhhh-ccccccCCCCCCC--HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCc
Q 027740 30 EEVGKV-ADIIQIPAFLCRQ--TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIV 106 (219)
Q Consensus 30 ~~l~~~-vd~~kI~S~~~~n--~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~ 106 (219)
+.|.+. ++.+-+|...+.. .+.++.+.+.+.++-+..-.....++++.|. ..|.+.+.++-..|.+... ..+
T Consensus 27 ~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~----~~g~~~i~i~~~~s~~~~~-~~~ 101 (259)
T cd07939 27 RALDEAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAAL----RCGVTAVHISIPVSDIHLA-HKL 101 (259)
T ss_pred HHHHHcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHH----hCCcCEEEEEEecCHHHHH-HHh
Confidence 344445 6666666554543 3578888775554444333323677776654 4577777777766532000 001
Q ss_pred c------c----hhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCC
Q 027740 107 D------P----RNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 176 (219)
Q Consensus 107 n------l----~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~ 176 (219)
| + ..+...|+.++.|.+.+..+. .-..+++...+..+..+|++.+
T Consensus 102 ~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~---------------~~~~~~~~~~~~~~~~~G~~~i---------- 156 (259)
T cd07939 102 GKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDAS---------------RADPDFLIEFAEVAQEAGADRL---------- 156 (259)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCC---------------CCCHHHHHHHHHHHHHCCCCEE----------
Confidence 1 1 223333445666766444431 0123456677778889999832
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHH
Q 027740 177 APVDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 177 a~~D~~~sl~p~el~~lv~~ir~i 200 (219)
.++|..-.+.|+++.++++.+++.
T Consensus 157 ~l~DT~G~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 157 RFADTVGILDPFTTYELIRRLRAA 180 (259)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHh
Confidence 257999999999999999998863
No 154
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=91.15 E-value=4.9 Score=35.02 Aligned_cols=134 Identities=16% Similarity=0.198 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCC-CCCCHHH-----HHHHHhcCC----eEEEeCCC------
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAF-LCRQTDL-----LVAAAKTGK----IINIKKGQ------ 68 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~-~~~n~~L-----L~~~a~~gk----PVilstG~------ 68 (219)
+..++++++ .+|++-+|-++.++ ....|.+-++|= +.+|... .+.+...++ .=++.+|-
T Consensus 45 ~~~ik~~~~--~~Pvilfp~~~~~i---~~~aDa~l~~svlns~n~~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~ 119 (219)
T cd02812 45 VRLIKRIRR--PVPVILFPSNPEAV---SPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPD 119 (219)
T ss_pred HHHHHHhcC--CCCEEEeCCCcccc---CcCCCEEEEEeeecCCCchHHHHHHHHHHHHhccccccccccceEEEEECCC
Confidence 344555443 69999999999887 345777777763 2224333 334433333 21222221
Q ss_pred -----------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c-CCCEEEcCCCCCCCCCCC
Q 027740 69 -----------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGK 135 (219)
Q Consensus 69 -----------~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~ 135 (219)
..+++++..-+..-..-| -+++-++ +|. .. .|...+..+++ . ++|+.+.
T Consensus 120 ~~v~~v~~a~~~~~~e~~~ayA~aae~~g-~~ivyLe-~SG--~~---~~~e~I~~v~~~~~~~pl~vG----------- 181 (219)
T cd02812 120 STVARVTGAKTDLKPEDAAAYALAAEYLG-MPIVYLE-YSG--AY---GPPEVVRAVKKVLGDTPLIVG----------- 181 (219)
T ss_pred CceeeeeccCcCCCHHHHHHHHHHHHHcC-CeEEEeC-CCC--Cc---CCHHHHHHHHHhcCCCCEEEe-----------
Confidence 235667666555555567 6788888 542 21 68888999988 7 8998872
Q ss_pred ccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeec
Q 027740 136 KLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 136 ~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~ 172 (219)
+|.|. ...+..+..+|||++++=.-+
T Consensus 182 ---------GGIrs--~e~a~~l~~aGAD~VVVGsai 207 (219)
T cd02812 182 ---------GGIRS--GEQAKEMAEAGADTIVVGNIV 207 (219)
T ss_pred ---------CCCCC--HHHHHHHHHcCCCEEEECchh
Confidence 24443 456777888899998886553
No 155
>PLN02321 2-isopropylmalate synthase
Probab=91.11 E-value=3.7 Score=41.16 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=91.4
Q ss_pred HHhhh-ccccccCCCCCC--CHHHHHHHHhcCC---------eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC
Q 027740 31 EVGKV-ADIIQIPAFLCR--QTDLLVAAAKTGK---------IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM 98 (219)
Q Consensus 31 ~l~~~-vd~~kI~S~~~~--n~~LL~~~a~~gk---------PVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~ 98 (219)
.|.++ ++.+-+|+.-+. ..+.++.+++..+ |++..-+.+ ..++++.|++.+.....+.+.+.-.+|.
T Consensus 116 ~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra-~~~dId~A~~al~~a~~~~I~i~~stSd 194 (632)
T PLN02321 116 QLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRC-NKKDIDAAWEAVKHAKRPRIHTFIATSE 194 (632)
T ss_pred HHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhc-cHHhHHHHHHHhcCCCCCEEEEEEcCCH
Confidence 44555 777777764342 4556777766422 778778887 8999999999876555566777766553
Q ss_pred C------CCCC-CCcc--chhHHHHHhcCC-CEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 99 F------GYND-LIVD--PRNLEWMREANC-PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 99 ~------~~~~-~~~n--l~~i~~lk~~~~-pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
. +... +.++ ...+...|+.++ .|.|++--.- --..+++..++.++..+||+- |
T Consensus 195 ~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~---------------rtd~d~l~~~~~~a~~aGa~~--I 257 (632)
T PLN02321 195 IHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG---------------RSDPEFLYRILGEVIKAGATT--L 257 (632)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC---------------CCCHHHHHHHHHHHHHcCCCE--E
Confidence 1 1111 1111 122333344556 4777553220 012567778889999999982 1
Q ss_pred eeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 169 EVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 169 EkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
+++|---.++|.++.++++.+++
T Consensus 258 --------~L~DTvG~~~P~~v~~li~~l~~ 280 (632)
T PLN02321 258 --------NIPDTVGYTLPSEFGQLIADIKA 280 (632)
T ss_pred --------EecccccCCCHHHHHHHHHHHHH
Confidence 36898899999999999999874
No 156
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=91.11 E-value=4 Score=38.04 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=72.5
Q ss_pred ccccccCCCCCCCHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL----~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|++.+ +++-+.+.||||..... +. .+ + +.+ .=...+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~-~~-------~~-------------~----g~~---~~~~~v 66 (347)
T PRK13399 15 ENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRG-AR-------KY-------------A----GDA---MLRHMV 66 (347)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcc-hh-------hh-------------C----CHH---HHHHHH
Confidence 45678899999997654 44555788888877655 11 00 0 111 001223
Q ss_pred HHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe-eecCCCCCCCCCCCCCChH
Q 027740 112 EWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHDDPLNAPVDGPTQWPLR 188 (219)
Q Consensus 112 ~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE-kH~t~d~a~~D~~~sl~p~ 188 (219)
..+.+ + .+||.+--||.. . ......|+.+|.+.+||. +| ++|++..++.+
T Consensus 67 ~~~ae~~~~VPVaLHLDHg~----------------~-----~e~i~~Ai~~GFtSVMiDgS~------l~~~~~~~~~e 119 (347)
T PRK13399 67 LAAAEMYPDIPICLHQDHGN----------------S-----PATCQSAIRSGFTSVMMDGSL------LADGKTPASYD 119 (347)
T ss_pred HHHHHhcCCCcEEEECCCCC----------------C-----HHHHHHHHhcCCCEEEEeCCC------CCCCCCccCHH
Confidence 33444 5 599999889973 2 556789999999999998 45 45666677666
Q ss_pred HHHHHHHHHHHHHHHhC
Q 027740 189 NLEELLEELVAIAKVSK 205 (219)
Q Consensus 189 el~~lv~~ir~i~~~lg 205 (219)
|==++.+++-+.....|
T Consensus 120 eNI~~Trevve~Ah~~G 136 (347)
T PRK13399 120 YNVDVTRRVTEMAHAVG 136 (347)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 65555555555544444
No 157
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=91.09 E-value=8.7 Score=36.04 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 027740 49 TDLLVAAAKTGKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 49 ~~LL~~~a~~gkPVilstG~~~t~~ei~~A 78 (219)
..+-+++++.|.|.++||-.+.+++|+..+
T Consensus 90 ~a~AraA~~~gi~~~lSt~ss~slEeva~~ 119 (367)
T PLN02493 90 YATARAASAAGTIMTLSSWATSSVEEVAST 119 (367)
T ss_pred HHHHHHHHHcCCCeeecCcccCCHHHHHhc
Confidence 478899999999999999999999999765
No 158
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=90.97 E-value=9.6 Score=35.24 Aligned_cols=126 Identities=21% Similarity=0.195 Sum_probs=67.3
Q ss_pred HHHHHHHhc-CCeEEEe-CCCCCCHHHHHHHHHHHHHcCCCcEEEEeec-CCC-CCC--C----------CCccc---hh
Q 027740 50 DLLVAAAKT-GKIINIK-KGQFCASSVMVNSAEKVRLAGNPNVMVCERG-TMF-GYN--D----------LIVDP---RN 110 (219)
Q Consensus 50 ~LL~~~a~~-gkPVils-tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cg-s~~-~~~--~----------~~~nl---~~ 110 (219)
+.++++-+. +.||++| .|...+.+++ +.+.+.|..-|.+--+| +++ .-+ + .+..+ ..
T Consensus 176 e~i~~i~~~~~vPVivK~~g~g~s~~~a----~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~ 251 (352)
T PRK05437 176 DNIAEIVSALPVPVIVKEVGFGISKETA----KRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQS 251 (352)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCcHHHH----HHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHH
Confidence 456666664 8999999 5555454444 34555687655552222 111 000 0 01122 23
Q ss_pred HHHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChH
Q 027740 111 LEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLR 188 (219)
Q Consensus 111 i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~ 188 (219)
|...++ . ++||+.+ +|.+. ..-...++++||+++.+=+-|-- ++.+ --++
T Consensus 252 l~~i~~~~~~ipvia~--------------------GGI~~--~~dv~k~l~~GAd~v~ig~~~l~--~~~~----~g~~ 303 (352)
T PRK05437 252 LLEARSLLPDLPIIAS--------------------GGIRN--GLDIAKALALGADAVGMAGPFLK--AALE----GGEE 303 (352)
T ss_pred HHHHHHhcCCCeEEEE--------------------CCCCC--HHHHHHHHHcCCCEEEEhHHHHH--HHHh----ccHH
Confidence 444444 3 6888774 23322 23345778899997766554321 1111 1133
Q ss_pred ----HHHHHHHHHHHHHHHhCCC
Q 027740 189 ----NLEELLEELVAIAKVSKGK 207 (219)
Q Consensus 189 ----el~~lv~~ir~i~~~lg~~ 207 (219)
-++.+.++++.+-..+|..
T Consensus 304 ~v~~~i~~~~~eL~~~m~~~G~~ 326 (352)
T PRK05437 304 AVIELIEQWIEELKIAMFLTGAK 326 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC
Confidence 6777788888887777764
No 159
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=90.78 E-value=3.3 Score=38.51 Aligned_cols=133 Identities=13% Similarity=0.042 Sum_probs=82.9
Q ss_pred CCCeEeeeCCcccHHHHhhh-ccccccC--CCC--------CCCH-------HHHHHHHhcCCeEE--EeC-------CC
Q 027740 16 DIPIVTDVHETVQCEEVGKV-ADIIQIP--AFL--------CRQT-------DLLVAAAKTGKIIN--IKK-------GQ 68 (219)
Q Consensus 16 Gi~~~tt~~d~~~~~~l~~~-vd~~kI~--S~~--------~~n~-------~LL~~~a~~gkPVi--lst-------G~ 68 (219)
+..+..-..+..+++...+. ++.+.|. +.+ ++-. +.++++-+.|+.|. +++ |.
T Consensus 114 ~~~~~~l~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r 193 (347)
T PLN02746 114 GARFPVLTPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP 193 (347)
T ss_pred CCceeEEcCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC
Confidence 44443334577888887776 7765444 211 1111 45555556687775 554 44
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cC-CCEEEcCCCCCCCCCCCccCCCCccCCC
Q 027740 69 FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGG 146 (219)
Q Consensus 69 ~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~-~pV~~ds~Hs~~~~~~~~~~~~~~~~~G 146 (219)
. +++.+.+.++.+.+.|...|.|+.-.... .|. ++ .+-+..+++ +. .|+.+ +.|-. .|
T Consensus 194 ~-~~~~l~~~~~~~~~~Gad~I~l~DT~G~a-~P~-~v-~~lv~~l~~~~~~~~i~~-H~Hnd---------------~G 253 (347)
T PLN02746 194 V-PPSKVAYVAKELYDMGCYEISLGDTIGVG-TPG-TV-VPMLEAVMAVVPVDKLAV-HFHDT---------------YG 253 (347)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEecCCcCCc-CHH-HH-HHHHHHHHHhCCCCeEEE-EECCC---------------CC
Confidence 4 78888888888888898888888765431 221 12 134555666 66 47888 77753 23
Q ss_pred CcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 147 LRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 147 ~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
+-..-+++|+..||+ .++.-+.
T Consensus 254 ---lA~AN~lAA~~aGa~--~vd~sv~ 275 (347)
T PLN02746 254 ---QALANILVSLQMGIS--TVDSSVA 275 (347)
T ss_pred ---hHHHHHHHHHHhCCC--EEEEecc
Confidence 224557899999999 8887655
No 160
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=90.77 E-value=3.9 Score=37.77 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH
Q 027740 49 TDLLVAAAKTGKIINIKKGQFCASSVMVNSA 79 (219)
Q Consensus 49 ~~LL~~~a~~gkPVilstG~~~t~~ei~~A~ 79 (219)
..--+++++.|.|.++|+=.+.|+||+..|+
T Consensus 88 ~~taraa~~~~~~~i~Ss~at~S~EdI~~aa 118 (363)
T KOG0538|consen 88 LATARAAQAAGTIMILSSWATCSVEDIASAA 118 (363)
T ss_pred HHHHHHHHhcCCcEEEechhcCCHHHHHhhC
Confidence 3457888999999999999999999999988
No 161
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=90.75 E-value=4.2 Score=37.87 Aligned_cols=115 Identities=23% Similarity=0.196 Sum_probs=73.6
Q ss_pred ccccccCCCCCCCHHHHH----HHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLLV----AAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL~----~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|++.++ ++-+++.||||..... +.. ++ +.+ .=...+
T Consensus 13 ~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~-~~~--------------------~~----g~~---~~~~~~ 64 (347)
T TIGR01521 13 EFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRG-ARS--------------------YA----GAP---FLRHLI 64 (347)
T ss_pred HcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcc-hhh--------------------hC----CHH---HHHHHH
Confidence 456789999999976554 4455788888887665 210 00 111 111233
Q ss_pred HHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe-eecCCCCCCCCCCCCCChH
Q 027740 112 EWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHDDPLNAPVDGPTQWPLR 188 (219)
Q Consensus 112 ~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE-kH~t~d~a~~D~~~sl~p~ 188 (219)
..+.+ + .+||.+-=||.. . ....+.|+.+|.+.+||. +| ++|....++.+
T Consensus 65 ~~~ae~~~~VPValHLDHg~----------------~-----~e~i~~Ai~~GFtSVMiDgS~------l~~~~~~~p~e 117 (347)
T TIGR01521 65 LAAIEEYPHIPVVMHQDHGN----------------S-----PATCQRAIQLGFTSVMMDGSL------REDAKTPADYD 117 (347)
T ss_pred HHHHHhCCCCcEEEECCCCC----------------C-----HHHHHHHHHcCCCEEeecCcC------CcccCCCCCHH
Confidence 33444 5 499999889973 2 566788999999999988 33 34556667777
Q ss_pred HHHHHHHHHHHHHHHhC
Q 027740 189 NLEELLEELVAIAKVSK 205 (219)
Q Consensus 189 el~~lv~~ir~i~~~lg 205 (219)
|==++.+++-++....|
T Consensus 118 ENI~~Tkevve~Ah~~G 134 (347)
T TIGR01521 118 YNVRVTAEVVAFAHAVG 134 (347)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 66666666666555533
No 162
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=90.71 E-value=7 Score=36.82 Aligned_cols=140 Identities=21% Similarity=0.185 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHhcCCCeEe-eeCC----cccHHHHhhh-ccccccCCC-CCCC-HHHHHHHHhcCCeEEEe--CCCCCCH
Q 027740 3 EGLKILEKVKIAYDIPIVT-DVHE----TVQCEEVGKV-ADIIQIPAF-LCRQ-TDLLVAAAKTGKIINIK--KGQFCAS 72 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~t-t~~d----~~~~~~l~~~-vd~~kI~S~-~~~n-~~LL~~~a~~gkPVils--tG~~~t~ 72 (219)
.|.+.+++.++.++.+++. +.+- ...++.+.+. ++.+-+.+. +..+ ...++++-+.|+++++- +... +.
T Consensus 43 ~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t-~~ 121 (430)
T PRK07028 43 EGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPD-PV 121 (430)
T ss_pred hhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCC-HH
Confidence 4678888888887755443 3111 2267777777 888776433 2112 35677777889998872 2112 23
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCccc
Q 027740 73 SVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 150 (219)
Q Consensus 73 ~ei~~A~e~i~~~Gn~~i~L~~cgs~-~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~ 150 (219)
+.+.. ..+.|...+.+ +.+.. -.++. .-+..+..+++ +++||..+. |..
T Consensus 122 e~~~~----a~~~GaD~I~~-~pg~~~~~~~~--~~~~~l~~l~~~~~iPI~a~G--------------------GI~-- 172 (430)
T PRK07028 122 KRAVE----LEELGVDYINV-HVGIDQQMLGK--DPLELLKEVSEEVSIPIAVAG--------------------GLD-- 172 (430)
T ss_pred HHHHH----HHhcCCCEEEE-EeccchhhcCC--ChHHHHHHHHhhCCCcEEEEC--------------------CCC--
Confidence 43333 33457765543 43321 01111 12345666666 789998742 321
Q ss_pred HHHHHHHHHHcCCcEEEEeeecC
Q 027740 151 IPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 151 ~~~~~~aAvalGA~GlvIEkH~t 173 (219)
..-...+++.||+|+++=+-+.
T Consensus 173 -~~n~~~~l~aGAdgv~vGsaI~ 194 (430)
T PRK07028 173 -AETAAKAVAAGADIVIVGGNII 194 (430)
T ss_pred -HHHHHHHHHcCCCEEEEChHHc
Confidence 3345577899999988876554
No 163
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=90.71 E-value=3.6 Score=37.67 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=64.5
Q ss_pred CCCCCCCHHHHHHHH----h-cCCeEEEeC--CCC--CCHHHHHHHHHHHHHcCCCcEEEEeecCC-C-CCCC------C
Q 027740 42 PAFLCRQTDLLVAAA----K-TGKIINIKK--GQF--CASSVMVNSAEKVRLAGNPNVMVCERGTM-F-GYND------L 104 (219)
Q Consensus 42 ~S~~~~n~~LL~~~a----~-~gkPVilst--G~~--~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~-~-~~~~------~ 104 (219)
||..+.+.+++.++- + .+.||-+|. |.. -|.++....+..+.+.|...++ +|..+. . +|.. .
T Consensus 111 Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~-vh~Rt~~~~g~~~~~~~~~~ 189 (333)
T PRK11815 111 GACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFI-VHARKAWLKGLSPKENREIP 189 (333)
T ss_pred eeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEE-EcCCchhhcCCCccccccCC
Confidence 666777865555443 3 479999985 322 1345666777778888886554 554321 0 1210 2
Q ss_pred CccchhHHHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 105 IVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 105 ~~nl~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
.+|+..+..+++ + ++||+.+.+-. . ..-+....+ |+||+||=+-.-
T Consensus 190 ~~~~~~i~~v~~~~~~iPVI~nGgI~--------------------s--~eda~~~l~-~aDgVmIGRa~l 237 (333)
T PRK11815 190 PLDYDRVYRLKRDFPHLTIEINGGIK--------------------T--LEEAKEHLQ-HVDGVMIGRAAY 237 (333)
T ss_pred CcCHHHHHHHHHhCCCCeEEEECCcC--------------------C--HHHHHHHHh-cCCEEEEcHHHH
Confidence 357778888887 5 89998854422 1 222333333 799999876543
No 164
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=90.68 E-value=0.76 Score=40.89 Aligned_cols=82 Identities=20% Similarity=0.161 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCH--------HHHHHHHhcCCeEEEeCCCCCCHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQT--------DLLVAAAKTGKIINIKKGQFCASSV 74 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~--------~LL~~~a~~gkPVilstG~~~t~~e 74 (219)
-|+.|.++|+++|+.++.|+++.++++...+. .+++-|-.||+..+ .|...+- ....++-..|.. |.++
T Consensus 146 ~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRdL~tf~vd~~~~~~l~~~ip-~~~~~iseSGI~-~~~d 223 (254)
T PF00218_consen 146 QLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRDLKTFEVDLNRTEELAPLIP-KDVIVISESGIK-TPED 223 (254)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBCTTTCCBHTHHHHHHHCHSH-TTSEEEEESS-S-SHHH
T ss_pred HHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCccccCcccChHHHHHHHhhCc-cceeEEeecCCC-CHHH
Confidence 46899999999999999999999999998888 99999999988753 2222222 246777788888 9999
Q ss_pred HHHHHHHHHHcCCCcEE
Q 027740 75 MVNSAEKVRLAGNPNVM 91 (219)
Q Consensus 75 i~~A~e~i~~~Gn~~i~ 91 (219)
+... ...|-+-+.
T Consensus 224 ~~~l----~~~G~davL 236 (254)
T PF00218_consen 224 ARRL----ARAGADAVL 236 (254)
T ss_dssp HHHH----CTTT-SEEE
T ss_pred HHHH----HHCCCCEEE
Confidence 8754 445654443
No 165
>PTZ00081 enolase; Provisional
Probab=90.65 E-value=2.2 Score=40.87 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=68.0
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhhcc----ccccCCCC--CCCHHHHHHHHhcC--CeEEEeCCCCCCHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVAD----IIQIPAFL--CRQTDLLVAAAKTG--KIINIKKGQFCASSVMV 76 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd----~~kI~S~~--~~n~~LL~~~a~~g--kPVilstG~~~t~~ei~ 76 (219)
+..+.+.++++++.++=+|+.+++.+-+.++.. -.+|...+ ++|..-++..-+.+ --+++|-++.+++.|..
T Consensus 287 i~~~~~~l~~y~I~~IEDPl~~~D~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGITe~l 366 (439)
T PTZ00081 287 VELYLDLVKKYPIVSIEDPFDQDDWEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVTEAI 366 (439)
T ss_pred HHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHHHHH
Confidence 455667889999999999999998888877722 24566665 36776666665544 47888888888899999
Q ss_pred HHHHHHHHcCCCcEEEEeec
Q 027740 77 NSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 77 ~A~e~i~~~Gn~~i~L~~cg 96 (219)
++++..++.|- .+++-||.
T Consensus 367 ~~a~lA~~~Gi-~~iishrs 385 (439)
T PTZ00081 367 EAAKLAQKNGW-GVMVSHRS 385 (439)
T ss_pred HHHHHHHHcCC-cEEEeCCC
Confidence 98888888775 46777774
No 166
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=90.60 E-value=2.7 Score=38.98 Aligned_cols=126 Identities=11% Similarity=0.133 Sum_probs=82.4
Q ss_pred CcccHHHHhhh-cccccc--CCCCCCC---------------HHHHHHHHhcCCeEEEe--CCCCCCHHHHHHHHHHHHH
Q 027740 25 ETVQCEEVGKV-ADIIQI--PAFLCRQ---------------TDLLVAAAKTGKIINIK--KGQFCASSVMVNSAEKVRL 84 (219)
Q Consensus 25 d~~~~~~l~~~-vd~~kI--~S~~~~n---------------~~LL~~~a~~gkPVils--tG~~~t~~ei~~A~e~i~~ 84 (219)
...+++.+.+. ++.+.| ++.+..+ .+.++++.+.|..|.++ .....+++.+...++.+.+
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~ 152 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEE 152 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHh
Confidence 45666666665 666555 4332211 24566777778877766 3333478999999999999
Q ss_pred cCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCC
Q 027740 85 AGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGV 163 (219)
Q Consensus 85 ~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA 163 (219)
.|...|.|+..... -+|. ++ .+-+..+++ +++|+++ +.|-. .| +-..-+++|+..||
T Consensus 153 ~g~~~i~l~DT~G~-~~P~-~v-~~li~~l~~~~~~~l~~-H~Hnd---------------~G---lA~AN~laA~~aGa 210 (363)
T TIGR02090 153 AGADRINIADTVGV-LTPQ-KM-EELIKKLKENVKLPISV-HCHND---------------FG---LATANSIAGVKAGA 210 (363)
T ss_pred CCCCEEEEeCCCCc-cCHH-HH-HHHHHHHhcccCceEEE-EecCC---------------CC---hHHHHHHHHHHCCC
Confidence 99998888886543 1232 22 244566676 7789998 77753 13 22456789999999
Q ss_pred cEEEEeeecCC
Q 027740 164 DGVFMEVHDDP 174 (219)
Q Consensus 164 ~GlvIEkH~t~ 174 (219)
+ .|+.-+..
T Consensus 211 ~--~vd~s~~G 219 (363)
T TIGR02090 211 E--QVHVTVNG 219 (363)
T ss_pred C--EEEEEeec
Confidence 8 88876554
No 167
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.58 E-value=9.3 Score=32.06 Aligned_cols=128 Identities=19% Similarity=0.192 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCCe--EeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 027740 4 GLKILEKVKIAYDIPI--VTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~--~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e 80 (219)
..+.++...+.+.+.. ..+++..++++...+. ++++-+|..+ .+.++.....+.+.++ |. .|++|+..|.+
T Consensus 50 ~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~~---~~~~~~~~~~~~~~i~--G~-~t~~e~~~A~~ 123 (187)
T PRK07455 50 PAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHVD---PELIEAAVAQDIPIIP--GA-LTPTEIVTAWQ 123 (187)
T ss_pred HHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCCC---HHHHHHHHHcCCCEEc--Cc-CCHHHHHHHHH
Confidence 3455555555555432 3488888999988887 8888777755 5666666677788665 54 49999988864
Q ss_pred HHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 81 KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 81 ~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
.|.+.+-+ ||++. ..-+..+..++. + ++|++. . ||.. ..-...-
T Consensus 124 ----~Gadyv~~------Fpt~~-~~G~~~l~~~~~~~~~ipvva--i------------------GGI~---~~n~~~~ 169 (187)
T PRK07455 124 ----AGASCVKV------FPVQA-VGGADYIKSLQGPLGHIPLIP--T------------------GGVT---LENAQAF 169 (187)
T ss_pred ----CCCCEEEE------CcCCc-ccCHHHHHHHHhhCCCCcEEE--e------------------CCCC---HHHHHHH
Confidence 67766665 55432 235677777777 6 689864 1 3421 2223345
Q ss_pred HHcCCcEEEEeee
Q 027740 159 IAVGVDGVFMEVH 171 (219)
Q Consensus 159 valGA~GlvIEkH 171 (219)
.+.||+|+-+=+-
T Consensus 170 l~aGa~~vav~s~ 182 (187)
T PRK07455 170 IQAGAIAVGLSGQ 182 (187)
T ss_pred HHCCCeEEEEehh
Confidence 7789988765443
No 168
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=90.56 E-value=2.8 Score=39.02 Aligned_cols=136 Identities=12% Similarity=0.087 Sum_probs=88.4
Q ss_pred cCCCeEeeeCC---cccHHHHhhh-ccccccC--CCCC--------------CC-HHHHHHHHhcCCeEEEe--CCCCCC
Q 027740 15 YDIPIVTDVHE---TVQCEEVGKV-ADIIQIP--AFLC--------------RQ-TDLLVAAAKTGKIINIK--KGQFCA 71 (219)
Q Consensus 15 ~Gi~~~tt~~d---~~~~~~l~~~-vd~~kI~--S~~~--------------~n-~~LL~~~a~~gkPVils--tG~~~t 71 (219)
.|+......|. ..+++.+.+. ++++.|. ..+. .+ .+.++++-+.|..|.++ -+.-.+
T Consensus 64 ~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~ 143 (378)
T PRK11858 64 LGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTD 143 (378)
T ss_pred cCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCC
Confidence 56655445555 5566666665 6665442 3332 11 23566777788888876 333347
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCccc
Q 027740 72 SSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 150 (219)
Q Consensus 72 ~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~ 150 (219)
++.+...++.+.+.|...|.||..+.. -+|. ++ ...+..+++ +++|+++ +.|-. .| +
T Consensus 144 ~~~l~~~~~~~~~~Ga~~I~l~DT~G~-~~P~-~v-~~lv~~l~~~~~~~l~~-H~Hnd---------------~G---l 201 (378)
T PRK11858 144 LDFLIEFAKAAEEAGADRVRFCDTVGI-LDPF-TM-YELVKELVEAVDIPIEV-HCHND---------------FG---M 201 (378)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeccCCC-CCHH-HH-HHHHHHHHHhcCCeEEE-EecCC---------------cC---H
Confidence 899999999999999998888886543 1232 12 244556776 7899999 77752 13 2
Q ss_pred HHHHHHHHHHcCCcEEEEeeecCC
Q 027740 151 IPCIARTAIAVGVDGVFMEVHDDP 174 (219)
Q Consensus 151 ~~~~~~aAvalGA~GlvIEkH~t~ 174 (219)
...-+++|+..||+ .|+.-+..
T Consensus 202 A~AN~laAv~aGa~--~vd~tv~G 223 (378)
T PRK11858 202 ATANALAGIEAGAK--QVHTTVNG 223 (378)
T ss_pred HHHHHHHHHHcCCC--EEEEeecc
Confidence 24557899999998 88876554
No 169
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=90.56 E-value=9.6 Score=32.15 Aligned_cols=137 Identities=16% Similarity=0.172 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCCeEee--eCCcccHHHHhhh-ccccccCCCCCCC---HHHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTD--VHETVQCEEVGKV-ADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt--~~d~~~~~~l~~~-vd~~kI~S~~~~n---~~LL~~~a~~gkPVilstG~~~t~~ei~~ 77 (219)
.++.+...++..++|++.- +.++.+++.+.+. +|.+-++..++.. .++++++...|.-+++... +.+|+..
T Consensus 60 ~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~ 136 (217)
T cd00331 60 SLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVH---DEEELER 136 (217)
T ss_pred CHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEEC---CHHHHHH
Confidence 4566677777778888852 3455578888888 9999988887764 4556666667887766663 7888766
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHH
Q 027740 78 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCI 154 (219)
Q Consensus 78 A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~ 154 (219)
+.+ .|...+ .++ +.. . .....|+..+..+++ + ++||+. . +|... ..-
T Consensus 137 ~~~----~g~~~i-~~t-~~~-~-~~~~~~~~~~~~l~~~~~~~~pvia-~-------------------gGI~s--~ed 186 (217)
T cd00331 137 ALA----LGAKII-GIN-NRD-L-KTFEVDLNTTERLAPLIPKDVILVS-E-------------------SGIST--PED 186 (217)
T ss_pred HHH----cCCCEE-EEe-CCC-c-cccCcCHHHHHHHHHhCCCCCEEEE-E-------------------cCCCC--HHH
Confidence 544 465444 433 111 1 112356677777765 3 578865 1 12111 234
Q ss_pred HHHHHHcCCcEEEEeeecC
Q 027740 155 ARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 155 ~~aAvalGA~GlvIEkH~t 173 (219)
...+..+||+|+++=+.++
T Consensus 187 i~~~~~~Ga~gvivGsai~ 205 (217)
T cd00331 187 VKRLAEAGADAVLIGESLM 205 (217)
T ss_pred HHHHHHcCCCEEEECHHHc
Confidence 5567788999999987754
No 170
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=90.54 E-value=7.9 Score=31.17 Aligned_cols=93 Identities=17% Similarity=0.109 Sum_probs=53.4
Q ss_pred HHHHHHHHhc---CCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c--CCC
Q 027740 49 TDLLVAAAKT---GKIINIKKGQF--CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCP 120 (219)
Q Consensus 49 ~~LL~~~a~~---gkPVilstG~~--~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~--~~p 120 (219)
.+.++++++. ++||++..-.. .+++++...++.....|- ..+.-.+. +.....|+..+..+++ + ++|
T Consensus 100 ~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~---~~iK~~~~--~~~~~~~~~~~~~i~~~~~~~~~ 174 (201)
T cd00945 100 LEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGA---DFIKTSTG--FGGGGATVEDVKLMKEAVGGRVG 174 (201)
T ss_pred HHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCC---CEEEeCCC--CCCCCCCHHHHHHHHHhcccCCc
Confidence 3455556654 89999876422 267888877766655443 23322111 1112246777777776 5 567
Q ss_pred EEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 121 V~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
|...+... . ......+..+||+|+++
T Consensus 175 v~~~gg~~-----------------~-----~~~~~~~~~~Ga~g~~~ 200 (201)
T cd00945 175 VKAAGGIK-----------------T-----LEDALAAIEAGADGIGT 200 (201)
T ss_pred EEEECCCC-----------------C-----HHHHHHHHHhccceeec
Confidence 76532221 1 34566778889999764
No 171
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=90.51 E-value=12 Score=33.39 Aligned_cols=87 Identities=17% Similarity=0.164 Sum_probs=56.8
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccC
Q 027740 60 KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLD 138 (219)
Q Consensus 60 kPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~ 138 (219)
.|+.+---...+.+++..+++.+...|. +.+.++.+... +........+.++++ +++||++=--.
T Consensus 116 ~~~~~ql~~~~~~~~~~~~i~~~~~~g~-~~i~l~~~~p~--~~~~~~~~~i~~l~~~~~~pvivK~v~----------- 181 (299)
T cd02809 116 GPRWFQLYVPRDREITEDLLRRAEAAGY-KALVLTVDTPV--LGRRLTWDDLAWLRSQWKGPLILKGIL----------- 181 (299)
T ss_pred CCeEEEEeecCCHHHHHHHHHHHHHcCC-CEEEEecCCCC--CCCCCCHHHHHHHHHhcCCCEEEeecC-----------
Confidence 5655543222267888888888877776 56667766531 111134567888888 78999872111
Q ss_pred CCCccCCCCcccHHHHHHHHHHcCCcEEEEeeec
Q 027740 139 GGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 139 ~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~ 172 (219)
. ...++.+..+|+|++.+.-|-
T Consensus 182 -------s-----~~~a~~a~~~G~d~I~v~~~g 203 (299)
T cd02809 182 -------T-----PEDALRAVDAGADGIVVSNHG 203 (299)
T ss_pred -------C-----HHHHHHHHHCCCCEEEEcCCC
Confidence 1 456889999999988887663
No 172
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=90.42 E-value=12 Score=33.28 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHhcCCCeE-eeeCCcc---c----HHHHhhh-ccccccCCCCCCC-HHHHHHHHhcCC-eEEEeCCCCCC
Q 027740 3 EGLKILEKVKIAYDIPIV-TDVHETV---Q----CEEVGKV-ADIIQIPAFLCRQ-TDLLVAAAKTGK-IINIKKGQFCA 71 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~-tt~~d~~---~----~~~l~~~-vd~~kI~S~~~~n-~~LL~~~a~~gk-PVilstG~~~t 71 (219)
..|.++++..++..+|++ =+-+++- . ++.+.+. +|-+-|+---... .++++.+.+.|+ ||.+=+... +
T Consensus 78 ~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT-~ 156 (263)
T CHL00200 78 KILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTS-S 156 (263)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCC-C
Confidence 457888888877788733 3444431 1 2233334 6666666555543 466777777785 666666665 5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC--CCc--cc-hhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCC
Q 027740 72 SSVMVNSAEKVRLAGNPNVMVCERGTMFGYND--LIV--DP-RNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASG 145 (219)
Q Consensus 72 ~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~--~~~--nl-~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~ 145 (219)
.+.+...++.. .| .+. |.|..+..- ..+ ++ ..+..+|+ +++||.++ -
T Consensus 157 ~eri~~i~~~a--~g---FIY--~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vG--F------------------ 209 (263)
T CHL00200 157 KSRIQKIARAA--PG---CIY--LVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILG--F------------------ 209 (263)
T ss_pred HHHHHHHHHhC--CC---cEE--EEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEE--C------------------
Confidence 66665544421 12 222 333322211 111 12 33556677 78898763 1
Q ss_pred CCcccHHHHHHHHHHcCCcEEEEeeecC--CCCCCCCCCCCCChHHHHHHHHHHH
Q 027740 146 GLRELIPCIARTAIAVGVDGVFMEVHDD--PLNAPVDGPTQWPLRNLEELLEELV 198 (219)
Q Consensus 146 G~~~~~~~~~~aAvalGA~GlvIEkH~t--~d~a~~D~~~sl~p~el~~lv~~ir 198 (219)
|.+. +..+......||||+++=+.+- .+++ + ..-..++++++++.++
T Consensus 210 GI~~--~e~~~~~~~~GADGvVVGSalv~~i~~~--~--~~~~~~~~~~~~~~~~ 258 (263)
T CHL00200 210 GIST--SEQIKQIKGWNINGIVIGSACVQILLGS--S--PEKGLDQLSEFCKVAK 258 (263)
T ss_pred CcCC--HHHHHHHHhcCCCEEEECHHHHHHHHhc--C--hhhHHHHHHHHHHHHH
Confidence 2111 3456677889999999887752 1111 0 0112456777776665
No 173
>PRK08227 autoinducer 2 aldolase; Validated
Probab=90.33 E-value=2.7 Score=37.63 Aligned_cols=82 Identities=17% Similarity=0.157 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCccc-------------HHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCC
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQ-------------CEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF 69 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~-------------~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~ 69 (219)
-|..+.+.|+++|+|++. ++ +.. +...+++ .|++|+.--. ..|-+.++....||++.=|..
T Consensus 128 ~l~~v~~ea~~~G~Plla-~~-prG~~~~~~~~~ia~aaRiaaELGADiVK~~y~~---~~f~~vv~a~~vPVviaGG~k 202 (264)
T PRK08227 128 NIIQLVDAGLRYGMPVMA-VT-AVGKDMVRDARYFSLATRIAAEMGAQIIKTYYVE---EGFERITAGCPVPIVIAGGKK 202 (264)
T ss_pred HHHHHHHHHHHhCCcEEE-Ee-cCCCCcCchHHHHHHHHHHHHHHcCCEEecCCCH---HHHHHHHHcCCCcEEEeCCCC
Confidence 366778899999999998 22 211 2234467 8999988653 456666667789999999998
Q ss_pred CCHHHHHHHHHHHHHcCCCcE
Q 027740 70 CASSVMVNSAEKVRLAGNPNV 90 (219)
Q Consensus 70 ~t~~ei~~A~e~i~~~Gn~~i 90 (219)
.+.+|+++-++-....|..-+
T Consensus 203 ~~~~~~L~~v~~ai~aGa~Gv 223 (264)
T PRK08227 203 LPERDALEMCYQAIDEGASGV 223 (264)
T ss_pred CCHHHHHHHHHHHHHcCCcee
Confidence 777888877776666776433
No 174
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=90.27 E-value=7.8 Score=37.22 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
.+.+.+.|+++|++++-.= .++...++ ++-+-+|..++.... ++.+...++-|.+|+. +.+|+..|.+
T Consensus 250 a~~l~~l~~~~gv~LiIND----~~dlAl~~gAdGVHLGQeDL~~~~-aR~ilg~~~iIGvStH---s~eEl~~A~~--- 318 (437)
T PRK12290 250 IIRAIALGREYNAQVFIND----YWQLAIKHQAYGVHLGQEDLEEAN-LAQLTDAGIRLGLSTH---GYYELLRIVQ--- 318 (437)
T ss_pred HHHHHHHHHHhCCEEEEEC----HHHHHHHcCCCEEEcChHHcchhh-hhhhcCCCCEEEEecC---CHHHHHHHhh---
Confidence 5678889999999988752 36666666 788889998887655 4444445778888875 8899887754
Q ss_pred HcCCCcEEEEeecCCCCCCCCC-----ccchhHHHHHh-c---------CCCEEEcCCCCCCCCCCCccCCCCccCCCCc
Q 027740 84 LAGNPNVMVCERGTMFGYNDLI-----VDPRNLEWMRE-A---------NCPVVADVTHSLQQPAGKKLDGGGVASGGLR 148 (219)
Q Consensus 84 ~~Gn~~i~L~~cgs~~~~~~~~-----~nl~~i~~lk~-~---------~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~ 148 (219)
.|-..|.+-+- |++..+. .-+..+..+++ . ++||+. .||..
T Consensus 319 -~gaDYI~lGPI---FpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVA--------------------IGGI~ 374 (437)
T PRK12290 319 -IQPSYIALGHI---FPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVA--------------------IGGID 374 (437)
T ss_pred -cCCCEEEECCc---cCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEE--------------------ECCcC
Confidence 46555655543 4333221 33444444343 3 678764 23532
Q ss_pred ccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 149 ELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 149 ~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
..-.....+.||+|+-+=+-++
T Consensus 375 ---~~Ni~~vl~aGa~GVAVVSAI~ 396 (437)
T PRK12290 375 ---QSNAEQVWQCGVSSLAVVRAIT 396 (437)
T ss_pred ---HHHHHHHHHcCCCEEEEehHhh
Confidence 2233466788999988877665
No 175
>PRK08185 hypothetical protein; Provisional
Probab=90.21 E-value=5.2 Score=36.17 Aligned_cols=108 Identities=18% Similarity=0.127 Sum_probs=69.5
Q ss_pred ccccccCCCCCCCHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL----~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|++.+ +++-+.+.||||..... +.. | .+ .. -...+
T Consensus 10 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~-~~~-------------------------~-~~-~~-~~~~~ 60 (283)
T PRK08185 10 EHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPN-ELD-------------------------F-LG-DN-FFAYV 60 (283)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcc-hhh-------------------------h-cc-HH-HHHHH
Confidence 45678899999997654 45556789999988776 221 1 00 00 01223
Q ss_pred HHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHH
Q 027740 112 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNL 190 (219)
Q Consensus 112 ~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el 190 (219)
..+.+ +.+||.+-=||.. . ....+.|+..|.+.+|+. .+ .++.+|.
T Consensus 61 ~~~a~~~~vPV~lHLDHg~----------------~-----~e~i~~ai~~Gf~SVM~D-----------~S-~l~~eeN 107 (283)
T PRK08185 61 RERAKRSPVPFVIHLDHGA----------------T-----IEDVMRAIRCGFTSVMID-----------GS-LLPYEEN 107 (283)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCEEEEe-----------CC-CCCHHHH
Confidence 33444 7899999888973 2 456678889998877664 22 2566777
Q ss_pred HHHHHHHHHHHHHhC
Q 027740 191 EELLEELVAIAKVSK 205 (219)
Q Consensus 191 ~~lv~~ir~i~~~lg 205 (219)
-++.+++.++....|
T Consensus 108 i~~t~~vv~~a~~~g 122 (283)
T PRK08185 108 VALTKEVVELAHKVG 122 (283)
T ss_pred HHHHHHHHHHHHHcC
Confidence 777777766666544
No 176
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=90.15 E-value=13 Score=32.94 Aligned_cols=148 Identities=22% Similarity=0.250 Sum_probs=86.6
Q ss_pred HHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccc-cCCCCCCCHHHHHHHHhcCCeEEEeC--CCCCC----------HH
Q 027740 8 LEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQ-IPAFLCRQTDLLVAAAKTGKIINIKK--GQFCA----------SS 73 (219)
Q Consensus 8 L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~k-I~S~~~~n~~LL~~~a~~gkPVilst--G~~~t----------~~ 73 (219)
++...+..++++.-+-++++-++...+. ++++- |..+.-. -.++.-+++.|.|+++-. |.-.+ ++
T Consensus 68 v~~i~~~~~~plSIDT~~~~v~e~al~~G~~iINdisg~~~~-~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~ 146 (257)
T cd00739 68 LEALRGELDVLISVDTFRAEVARAALEAGADIINDVSGGSDD-PAMLEVAAEYGAPLVLMHMRGTPKTMQENPYYEDVVD 146 (257)
T ss_pred HHHHHhcCCCcEEEeCCCHHHHHHHHHhCCCEEEeCCCCCCC-hHHHHHHHHcCCCEEEECCCCCCcccccCCCcccHHH
Confidence 4455555699998899999999987776 77765 5444322 567888889999999943 22111 22
Q ss_pred H----HHHHHHHHHHcCCC-cEEEEeecCCCCCCCCCcc---chhHHHHHhcCCCEEEcCC------CCCCCCCCCccCC
Q 027740 74 V----MVNSAEKVRLAGNP-NVMVCERGTMFGYNDLIVD---PRNLEWMREANCPVVADVT------HSLQQPAGKKLDG 139 (219)
Q Consensus 74 e----i~~A~e~i~~~Gn~-~i~L~~cgs~~~~~~~~~n---l~~i~~lk~~~~pV~~ds~------Hs~~~~~~~~~~~ 139 (219)
+ +...++.+...|-+ +=+++..|.-|... .+-| ++++..+|++++|+.+-.| +....+
T Consensus 147 ~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks-~~~~~~~l~~i~~l~~~~~pil~G~SrkSfig~~~~~~------- 218 (257)
T cd00739 147 EVLSFLEARLEAAESAGVARNRIILDPGIGFGKT-PEHNLELLRRLDELKQLGLPVLVGASRKSFIGALLGRE------- 218 (257)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHEEEecCCCcccC-HHHHHHHHHHHHHHHhCCCcEEEEecccHHHHHhcCCC-------
Confidence 3 34445567778864 23355666544211 1112 4556666667889765321 111101
Q ss_pred CCccCCCCcccH-HHHHHHHHHcCCcEEEEeee
Q 027740 140 GGVASGGLRELI-PCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 140 ~~~~~~G~~~~~-~~~~~aAvalGA~GlvIEkH 171 (219)
...|... ..++..|+..||+ +|=.|
T Consensus 219 -----~~~r~~~t~~~~~~~~~~Ga~--iiRvH 244 (257)
T cd00739 219 -----PKDRDWGTLALSALAAANGAD--IVRVH 244 (257)
T ss_pred -----ccccchhHHHHHHHHHHcCCC--EEEeC
Confidence 1112221 2233456888998 99888
No 177
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.15 E-value=1.6 Score=41.36 Aligned_cols=119 Identities=18% Similarity=0.113 Sum_probs=69.3
Q ss_pred cccHHHHhhh-ccccccCCCCCCC---HHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEe-----
Q 027740 26 TVQCEEVGKV-ADIIQIPAFLCRQ---TDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCE----- 94 (219)
Q Consensus 26 ~~~~~~l~~~-vd~~kI~S~~~~n---~~LL~~~a~~--gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~----- 94 (219)
.+.++.|.+. +|++-|-+.+=.+ .++++++.+. +.+|+...- + |.++.+.+++ .|..-|.+.-
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V-~-T~e~a~~l~~----aGaD~I~vG~g~Gs~ 228 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNI-V-TKEAALDLIS----VGADCLKVGIGPGSI 228 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEec-C-CHHHHHHHHH----cCCCEEEECCCCCcC
Confidence 3677777777 9998865544323 3566666554 355655544 3 7888887765 4665444321
Q ss_pred ecCCC--CCCCCCccchhHHHHHh----cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 95 RGTMF--GYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 95 cgs~~--~~~~~~~nl~~i~~lk~----~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
|++.. +.. ..++.++..+++ +++||+.|.- .+. +.-...|.++||+++||
T Consensus 229 c~tr~~~g~g--~p~ltai~~v~~~~~~~~vpVIAdGG--------------------I~~--~~Di~KALalGA~aVmv 284 (404)
T PRK06843 229 CTTRIVAGVG--VPQITAICDVYEVCKNTNICIIADGG--------------------IRF--SGDVVKAIAAGADSVMI 284 (404)
T ss_pred CcceeecCCC--CChHHHHHHHHHHHhhcCCeEEEeCC--------------------CCC--HHHHHHHHHcCCCEEEE
Confidence 22211 110 124555544333 5899988632 211 33355889999999998
Q ss_pred eeecCC
Q 027740 169 EVHDDP 174 (219)
Q Consensus 169 EkH~t~ 174 (219)
=.=|+-
T Consensus 285 Gs~~ag 290 (404)
T PRK06843 285 GNLFAG 290 (404)
T ss_pred cceeee
Confidence 776654
No 178
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=90.14 E-value=5.2 Score=35.95 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=61.5
Q ss_pred HHHHHHhcCCeEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cC-C
Q 027740 51 LLVAAAKTGKIIN--IK-------KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-C 119 (219)
Q Consensus 51 LL~~~a~~gkPVi--ls-------tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~-~ 119 (219)
.++++-+.|+-|. ++ -|.. +++.+...++.+.+.|...|.|+..+... .| .++ .+-+..+|+ ++ +
T Consensus 125 ~v~~ak~~g~~v~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~G~d~i~l~DT~G~~-~P-~~v-~~lv~~l~~~~~~~ 200 (287)
T PRK05692 125 VAEAAKQAGVRVRGYVSCVLGCPYEGEV-PPEAVADVAERLFALGCYEISLGDTIGVG-TP-GQV-RAVLEAVLAEFPAE 200 (287)
T ss_pred HHHHHHHcCCEEEEEEEEEecCCCCCCC-CHHHHHHHHHHHHHcCCcEEEeccccCcc-CH-HHH-HHHHHHHHHhCCCC
Confidence 4455555676654 22 2333 77888888888888888777777765431 22 112 134556676 65 8
Q ss_pred CEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 120 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 120 pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
|+++ +.|-. .| +-..-+++|+.+||+ .|+.-..
T Consensus 201 ~i~~-H~Hn~---------------~G---la~AN~laA~~aG~~--~id~s~~ 233 (287)
T PRK05692 201 RLAG-HFHDT---------------YG---QALANIYASLEEGIT--VFDASVG 233 (287)
T ss_pred eEEE-EecCC---------------CC---cHHHHHHHHHHhCCC--EEEEEcc
Confidence 9988 77863 23 224557899999999 7876654
No 179
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=90.10 E-value=2.4 Score=38.12 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCCCeEeee------------CCcccHH----HHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeC
Q 027740 4 GLKILEKVKIAYDIPIVTDV------------HETVQCE----EVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKK 66 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~------------~d~~~~~----~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilst 66 (219)
-+..+.+.|+++|+|++..+ +|++-+- .-+++ .|++|+.--... ..|-+.+...+.||+++=
T Consensus 131 ~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~~ytg~~-e~F~~vv~~~~vpVviaG 209 (265)
T COG1830 131 NISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKTKYTGDP-ESFRRVVAACGVPVVIAG 209 (265)
T ss_pred HHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEeecCCCCh-HHHHHHHHhCCCCEEEeC
Confidence 46677889999999999833 2222222 22356 889888644333 566777777889999999
Q ss_pred CCCC-CHHHHHHHHHHHHHcCCC
Q 027740 67 GQFC-ASSVMVNSAEKVRLAGNP 88 (219)
Q Consensus 67 G~~~-t~~ei~~A~e~i~~~Gn~ 88 (219)
|... +.+|+++-++-...+|-.
T Consensus 210 G~k~~~~~~~l~~~~~ai~aGa~ 232 (265)
T COG1830 210 GPKTETEREFLEMVTAAIEAGAM 232 (265)
T ss_pred CCCCCChHHHHHHHHHHHHccCc
Confidence 9998 889999888877777754
No 180
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=89.93 E-value=13 Score=34.63 Aligned_cols=101 Identities=19% Similarity=0.383 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH-H---------------------HHHHcCCCcEEEEeecCC--------
Q 027740 49 TDLLVAAAKTGKIINIKKGQFCASSVMVNSA-E---------------------KVRLAGNPNVMVCERGTM-------- 98 (219)
Q Consensus 49 ~~LL~~~a~~gkPVilstG~~~t~~ei~~A~-e---------------------~i~~~Gn~~i~L~~cgs~-------- 98 (219)
..+-+++++.|.|.++|+..+.+++|+..+. . ...+.|.+-++|.--...
T Consensus 92 ~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~~~~~~wfQlY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~ 171 (351)
T cd04737 92 VATARGMAEVGSLFSISTYSNTSLEEIAKASNGGPKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADI 171 (351)
T ss_pred HHHHHHHHHcCCCEEecCCCCCCHHHHHHhcCCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHH
Confidence 7788999999999999999999999998775 1 234556665655442100
Q ss_pred ---CCCC--------------------------CCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCc
Q 027740 99 ---FGYN--------------------------DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLR 148 (219)
Q Consensus 99 ---~~~~--------------------------~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~ 148 (219)
|..| ...++...|.++|+ .++||++=--. .
T Consensus 172 r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~PvivKgv~------------------~-- 231 (351)
T cd04737 172 RNKFQFPFGMPNLNHFSEGTGKGKGISEIYAAAKQKLSPADIEFIAKISGLPVIVKGIQ------------------S-- 231 (351)
T ss_pred HhcCCCCcccchhhhhccccccCcchhhhhhhccCCCCHHHHHHHHHHhCCcEEEecCC------------------C--
Confidence 0000 01234455667887 78898872100 1
Q ss_pred ccHHHHHHHHHHcCCcEEEEeeec
Q 027740 149 ELIPCIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 149 ~~~~~~~~aAvalGA~GlvIEkH~ 172 (219)
+.-+..++..|+||+++--|-
T Consensus 232 ---~~dA~~a~~~G~d~I~vsnhG 252 (351)
T cd04737 232 ---PEDADVAINAGADGIWVSNHG 252 (351)
T ss_pred ---HHHHHHHHHcCCCEEEEeCCC
Confidence 466789999999999998884
No 181
>PRK10206 putative oxidoreductase; Provisional
Probab=89.79 E-value=0.96 Score=41.30 Aligned_cols=60 Identities=10% Similarity=0.043 Sum_probs=51.0
Q ss_pred cHHH-Hhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 027740 28 QCEE-VGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN 87 (219)
Q Consensus 28 ~~~~-l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn 87 (219)
+.+. +++- +|++-|.+-.-.+.++..++.+.||+|++.+.++.|++|.+.-++..++.|.
T Consensus 55 ~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~ 116 (344)
T PRK10206 55 DLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGL 116 (344)
T ss_pred CHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCC
Confidence 3444 4444 9999999999999999999999999999999999999999998887766553
No 182
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=89.79 E-value=8.6 Score=33.80 Aligned_cols=146 Identities=11% Similarity=0.063 Sum_probs=83.4
Q ss_pred HHHhhh-ccccccCCCCCC--CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC------CC
Q 027740 30 EEVGKV-ADIIQIPAFLCR--QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM------FG 100 (219)
Q Consensus 30 ~~l~~~-vd~~kI~S~~~~--n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~------~~ 100 (219)
+.|.+. ++.+-+|++-.. ....++.+.+....+-+..-.-+...+++.|++.-...|...+.++-..|. ++
T Consensus 27 ~~L~~~Gv~~iEvg~~~~~~~~~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~ 106 (268)
T cd07940 27 RQLDELGVDVIEAGFPAASPGDFEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLK 106 (268)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhC
Confidence 334445 667777765543 245566666643333333222136788888777544444666666654432 11
Q ss_pred CCC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC
Q 027740 101 YND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 177 (219)
Q Consensus 101 ~~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a 177 (219)
... +.++ ...+...|+.++.|.|.+.++. .-..+++..++..+..+|++.+.
T Consensus 107 ~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~---------------~~~~~~~~~~~~~~~~~G~~~i~---------- 161 (268)
T cd07940 107 KTREEVLERAVEAVEYAKSHGLDVEFSAEDAT---------------RTDLDFLIEVVEAAIEAGATTIN---------- 161 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC---------------CCCHHHHHHHHHHHHHcCCCEEE----------
Confidence 110 1111 1123333445677777555541 01245566777788999998422
Q ss_pred CCCCCCCCChHHHHHHHHHHHHH
Q 027740 178 PVDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 178 ~~D~~~sl~p~el~~lv~~ir~i 200 (219)
++|..-.++|+++.++++.+|+.
T Consensus 162 l~DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 162 IPDTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999863
No 183
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=89.76 E-value=6.1 Score=36.82 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=73.7
Q ss_pred ccccccCCCCCCCHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL----~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|++.+ +++-+.+.||||..... +.. ++ +.+ .=...+
T Consensus 15 ~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~-~~~--------------------~~----g~~---~~~~~~ 66 (347)
T PRK09196 15 EHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAG-ARK--------------------YA----GEP---FLRHLI 66 (347)
T ss_pred HcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCcc-Hhh--------------------hC----CHH---HHHHHH
Confidence 45688999999997654 44555788999887665 210 00 111 001223
Q ss_pred HHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe-eecCCCCCCCCCCCCCChH
Q 027740 112 EWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME-VHDDPLNAPVDGPTQWPLR 188 (219)
Q Consensus 112 ~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE-kH~t~d~a~~D~~~sl~p~ 188 (219)
..+.+ + .+||.+-=||.. . ......|+.+|.+.+||. +| ++|+...++.+
T Consensus 67 ~~~a~~~~~VPValHLDHg~----------------~-----~e~i~~ai~~GftSVMiDgS~------l~~~~~~~p~e 119 (347)
T PRK09196 67 LAAVEEYPHIPVVMHQDHGN----------------S-----PATCQRAIQLGFTSVMMDGSL------KADGKTPASYE 119 (347)
T ss_pred HHHHHhCCCCcEEEECCCCC----------------C-----HHHHHHHHHcCCCEEEecCCC------CcccCCCCCHH
Confidence 33444 5 489999889973 2 456778999999999998 44 45666677777
Q ss_pred HHHHHHHHHHHHHHHhC
Q 027740 189 NLEELLEELVAIAKVSK 205 (219)
Q Consensus 189 el~~lv~~ir~i~~~lg 205 (219)
|==++.+++.+.....|
T Consensus 120 ENI~~Tkevve~Ah~~G 136 (347)
T PRK09196 120 YNVDVTRKVVEMAHACG 136 (347)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 66666666555555444
No 184
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=89.64 E-value=3.9 Score=38.04 Aligned_cols=118 Identities=12% Similarity=0.072 Sum_probs=72.8
Q ss_pred eeCCcccHHHHhhh---ccccccCCCCCCCH---HHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-
Q 027740 22 DVHETVQCEEVGKV---ADIIQIPAFLCRQT---DLLVAAAKT-GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC- 93 (219)
Q Consensus 22 t~~d~~~~~~l~~~---vd~~kI~S~~~~n~---~LL~~~a~~-gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~- 93 (219)
.+.|.+-++.|.+. +|++.|-+.+=.+. +.++++-+. ..+.+++=... |.+..+.+++ .|..-+.+.
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~-T~e~a~~Li~----aGAD~ikVgi 179 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVV-TGEMVEELIL----SGADIVKVGI 179 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEeccc-CHHHHHHHHH----cCCCEEEEcc
Confidence 44455555555554 68888877766654 444455443 34556655566 8988877654 587766666
Q ss_pred ----eecCCC----CCCCCCccchhHHHHHh----cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 027740 94 ----ERGTMF----GYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 161 (219)
Q Consensus 94 ----~cgs~~----~~~~~~~nl~~i~~lk~----~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAval 161 (219)
-|++.- ++| -+.++....+ +++||+.|.--- .+| .++ -|+|+
T Consensus 180 GpGSicttR~~~Gvg~p----qltAv~~~a~aa~~~~v~VIaDGGIr---------------~~g------DI~-KALA~ 233 (343)
T TIGR01305 180 GPGSVCTTRTKTGVGYP----QLSAVIECADAAHGLKGHIISDGGCT---------------CPG------DVA-KAFGA 233 (343)
T ss_pred cCCCcccCceeCCCCcC----HHHHHHHHHHHhccCCCeEEEcCCcC---------------chh------HHH-HHHHc
Confidence 688762 333 4667766543 478998873321 112 333 67889
Q ss_pred CCcEEEEee
Q 027740 162 GVDGVFMEV 170 (219)
Q Consensus 162 GA~GlvIEk 170 (219)
||+.+||=.
T Consensus 234 GAd~VMlG~ 242 (343)
T TIGR01305 234 GADFVMLGG 242 (343)
T ss_pred CCCEEEECH
Confidence 999988853
No 185
>PLN02591 tryptophan synthase
Probab=89.53 E-value=8.5 Score=34.10 Aligned_cols=164 Identities=21% Similarity=0.236 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHhcCCCeE-eeeCCcc---c----HHHHhhh-ccccccCCCCCC-CHHHHHHHHhcCC-eEEEeCCCCCC
Q 027740 3 EGLKILEKVKIAYDIPIV-TDVHETV---Q----CEEVGKV-ADIIQIPAFLCR-QTDLLVAAAKTGK-IINIKKGQFCA 71 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~-tt~~d~~---~----~~~l~~~-vd~~kI~S~~~~-n~~LL~~~a~~gk-PVilstG~~~t 71 (219)
..++++++..++..+|++ =+-+++- . ++.+.+. ++-+-|+---.. ..++.+++.+.|. +|.+-+... +
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt-~ 143 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTT-P 143 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCC-C
Confidence 568888888877777733 3444431 1 2222333 555555532222 4577777778886 455555554 5
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEeecCCC---CCC-CCCccchh-HHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCC
Q 027740 72 SSVMVNSAEKVRLAGNPNVMVCERGTMF---GYN-DLIVDPRN-LEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASG 145 (219)
Q Consensus 72 ~~ei~~A~e~i~~~Gn~~i~L~~cgs~~---~~~-~~~~nl~~-i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~ 145 (219)
.+-+...++. +.| -| .|++.. +.. ....++.. +..+|+ +++||++- .
T Consensus 144 ~~ri~~ia~~--~~g--FI---Y~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vG-F------------------- 196 (250)
T PLN02591 144 TERMKAIAEA--SEG--FV---YLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVG-F------------------- 196 (250)
T ss_pred HHHHHHHHHh--CCC--cE---EEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEe-C-------------------
Confidence 5555554442 222 23 343332 211 11223333 777888 89998762 1
Q ss_pred CCcccHHHHHHHHHHcCCcEEEEeeecC-CCCCCCCCCCCCChHHHHHHHHHHH
Q 027740 146 GLRELIPCIARTAIAVGVDGVFMEVHDD-PLNAPVDGPTQWPLRNLEELLEELV 198 (219)
Q Consensus 146 G~~~~~~~~~~aAvalGA~GlvIEkH~t-~d~a~~D~~~sl~p~el~~lv~~ir 198 (219)
|.+. +.-+.....+||||+++=+++- ......+.. --.++++++++.++
T Consensus 197 GI~~--~e~v~~~~~~GADGvIVGSalVk~i~~~~~~~--~~~~~~~~~~~~l~ 246 (250)
T PLN02591 197 GISK--PEHAKQIAGWGADGVIVGSAMVKALGEAKSPE--EGLKRLEKLAKSLK 246 (250)
T ss_pred CCCC--HHHHHHHHhcCCCEEEECHHHHHhhhhccChh--HHHHHHHHHHHHHH
Confidence 2110 3445578899999999998863 111111100 01356666666655
No 186
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=89.34 E-value=8.7 Score=37.21 Aligned_cols=143 Identities=12% Similarity=0.049 Sum_probs=92.2
Q ss_pred HHhhh-ccccccCCCCCCC--HHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------C
Q 027740 31 EVGKV-ADIIQIPAFLCRQ--TDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------G 100 (219)
Q Consensus 31 ~l~~~-vd~~kI~S~~~~n--~~LL~~~a~~gk-PVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~------~ 100 (219)
.|.++ ++.+-+|..-... .+.++.+++..+ |-+..-... ..++++.+++.+...+.+.+.++-.+|.. +
T Consensus 31 ~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~~~~~~~i~al~r~-~~~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~ 109 (494)
T TIGR00973 31 ALERLGVDIIEAGFPVSSPGDFEAVQRIARTVKNPRVCGLARC-VEKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLK 109 (494)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEcCC-CHHhHHHHHHhccccCCCEEEEEEccCHHHHHHHhC
Confidence 34555 7777776655443 556677755433 555555555 78999999998877777778777766531 1
Q ss_pred CCC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC
Q 027740 101 YND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 177 (219)
Q Consensus 101 ~~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a 177 (219)
... +.++ ...+...|+.+..|.|++-... .-..+++..+..++..+||+-+ .
T Consensus 110 ~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~---------------r~d~~~l~~~~~~~~~~Ga~~i----------~ 164 (494)
T TIGR00973 110 MTRDEVLERAVGMVKYAKNFTDDVEFSCEDAG---------------RTEIPFLARIVEAAINAGATTI----------N 164 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCC---------------CCCHHHHHHHHHHHHHcCCCEE----------E
Confidence 111 1111 1233344445677888544331 0134677788889999999721 2
Q ss_pred CCCCCCCCChHHHHHHHHHHHH
Q 027740 178 PVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 178 ~~D~~~sl~p~el~~lv~~ir~ 199 (219)
++|---.++|+++.++++.+++
T Consensus 165 l~DTvG~~~P~~~~~~i~~l~~ 186 (494)
T TIGR00973 165 IPDTVGYALPAEYGNLIKGLRE 186 (494)
T ss_pred eCCCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999875
No 187
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=89.29 E-value=9.1 Score=35.38 Aligned_cols=140 Identities=12% Similarity=0.040 Sum_probs=86.7
Q ss_pred HHHhhh-ccccccCCCCCCC--HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------C
Q 027740 30 EEVGKV-ADIIQIPAFLCRQ--TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------G 100 (219)
Q Consensus 30 ~~l~~~-vd~~kI~S~~~~n--~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~------~ 100 (219)
+.|.++ ++.+-+|...+.. .+.++.+.+.+.+.-+..-.....++++.|++ .|...+.++-..|.+ +
T Consensus 30 ~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~----~g~~~i~i~~~~Sd~~~~~~~~ 105 (365)
T TIGR02660 30 RALDEAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRARDADIEAAAR----CGVDAVHISIPVSDLQIEAKLR 105 (365)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHc----CCcCEEEEEEccCHHHHHHHhC
Confidence 344555 7777776655554 46688888775433333322237788776654 577777777765531 1
Q ss_pred CCCCCccc----hhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCC
Q 027740 101 YNDLIVDP----RNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 176 (219)
Q Consensus 101 ~~~~~~nl----~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~ 176 (219)
...+ -.+ ..+...|+.++.|.|.+-.+. --..+++..++.++..+||+. |
T Consensus 106 ~s~~-e~l~~~~~~i~~ak~~g~~v~~~~ed~~---------------r~~~~~l~~~~~~~~~~Ga~~--i-------- 159 (365)
T TIGR02660 106 KDRA-WVLERLARLVSFARDRGLFVSVGGEDAS---------------RADPDFLVELAEVAAEAGADR--F-------- 159 (365)
T ss_pred cCHH-HHHHHHHHHHHHHHhCCCEEEEeecCCC---------------CCCHHHHHHHHHHHHHcCcCE--E--------
Confidence 1111 012 233333445777777544431 012467778888999999983 2
Q ss_pred CCCCCCCCCChHHHHHHHHHHHH
Q 027740 177 APVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 177 a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
.++|---.++|+++.++++.+++
T Consensus 160 ~l~DT~G~~~P~~v~~lv~~l~~ 182 (365)
T TIGR02660 160 RFADTVGILDPFSTYELVRALRQ 182 (365)
T ss_pred EEcccCCCCCHHHHHHHHHHHHH
Confidence 26899999999999999999875
No 188
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=89.29 E-value=23 Score=36.10 Aligned_cols=136 Identities=12% Similarity=0.018 Sum_probs=82.8
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
.+.+.+.|+++|+.++-.- .++...++ +| +-+|..++.-.. .+..-..++-|.+|.. +.+|+..+...-.
T Consensus 52 a~~l~~l~~~~~~~liind----~~~la~~~~~d-VHlg~~dl~~~~-~r~~~~~~~~iG~S~h---~~~e~~~~~~~~~ 122 (755)
T PRK09517 52 AKELKELCDARGVALVVND----RLDVAVELGLH-VHIGQGDTPYTQ-ARRLLPAHLELGLTIE---TLDQLEAVIAQCA 122 (755)
T ss_pred HHHHHHHHHHhCCeEEEeC----hHHHHHHcCCC-eecCCCcCCHHH-HHHhcCCCCEEEEeCC---CHHHHHHHHhhhc
Confidence 5678888999999888753 36766677 88 889988864222 3322223556677654 8888866533211
Q ss_pred Hc---CCCcEEEEeecCCCCCCC---CCccchhHHHHHh-cC---CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHH
Q 027740 84 LA---GNPNVMVCERGTMFGYND---LIVDPRNLEWMRE-AN---CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPC 153 (219)
Q Consensus 84 ~~---Gn~~i~L~~cgs~~~~~~---~~~nl~~i~~lk~-~~---~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~ 153 (219)
.. |-..+.+-+.-.+ .+.+ ..+.+..+.++++ .. +||..= ||.. ..
T Consensus 123 ~~g~~gaDYi~~Gpvf~T-~tK~~~~~~lG~~~l~~~~~~~~~~~iPv~Ai--------------------GGI~---~~ 178 (755)
T PRK09517 123 ETGVALPDVIGIGPVAST-ATKPDAPPALGVDGIAEIAAVAQDHGIASVAI--------------------GGVG---LR 178 (755)
T ss_pred cCCCCCCCEEEECCcccc-CCCCCCCCCCCHHHHHHHHHhcCcCCCCEEEE--------------------CCCC---HH
Confidence 12 3555555543211 1111 1246677777776 65 898751 3422 23
Q ss_pred HHHHHHHcCCcEEEEeeecC
Q 027740 154 IARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 154 ~~~aAvalGA~GlvIEkH~t 173 (219)
-...+.+.||+|+.+-.-+.
T Consensus 179 ~~~~~~~~Ga~giAvisai~ 198 (755)
T PRK09517 179 NAAELAATGIDGLCVVSAIM 198 (755)
T ss_pred HHHHHHHcCCCEEEEehHhh
Confidence 34467789999999887764
No 189
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=89.24 E-value=4.3 Score=35.99 Aligned_cols=99 Identities=13% Similarity=0.167 Sum_probs=66.4
Q ss_pred HHHHHHHhcCCeEEEeCCC------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cC-CCE
Q 027740 50 DLLVAAAKTGKIINIKKGQ------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPV 121 (219)
Q Consensus 50 ~LL~~~a~~gkPVilstG~------~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~-~pV 121 (219)
++++.+-+.|..|.+. .+ ..+++.+...++.+...|...|.|+..... .+|. ++ -+-+..+|+ ++ +|+
T Consensus 123 ~~i~~ak~~G~~v~~~-~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~-~~P~-~v-~~lv~~l~~~~~~~~l 198 (273)
T cd07941 123 DSVAYLKSHGREVIFD-AEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGG-TLPH-EI-AEIVKEVRERLPGVPL 198 (273)
T ss_pred HHHHHHHHcCCeEEEe-EEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-CCHH-HH-HHHHHHHHHhCCCCee
Confidence 4666666779888773 22 226777788888888889988887776543 1232 22 244566776 55 899
Q ss_pred EEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 122 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 122 ~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
++ +.|-. .| +-..-+.+|+..||+ .|+.-+.
T Consensus 199 ~~-H~Hnd---------------~G---la~An~laA~~aGa~--~id~s~~ 229 (273)
T cd07941 199 GI-HAHND---------------SG---LAVANSLAAVEAGAT--QVQGTIN 229 (273)
T ss_pred EE-EecCC---------------CC---cHHHHHHHHHHcCCC--EEEEecc
Confidence 98 88863 13 225567899999998 7886644
No 190
>PLN00191 enolase
Probab=89.20 E-value=3.3 Score=39.84 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh--ccccccCCCCC--CCHHHHHHHHhcC--CeEEEeCCCCCCHHHHH
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV--ADIIQIPAFLC--RQTDLLVAAAKTG--KIINIKKGQFCASSVMV 76 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~--vd~~kI~S~~~--~n~~LL~~~a~~g--kPVilstG~~~t~~ei~ 76 (219)
+-++.+++.+++++|.++=+|+.+++.+-+.++ -.-.+|...+. +|..-++.+-+.+ --|++|-++.+++.|..
T Consensus 299 e~i~~~~~L~~~y~I~~IEDPl~~~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~ 378 (457)
T PLN00191 299 ELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESI 378 (457)
T ss_pred HHHHHHHHHhhcCCcEEEECCCCcccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHH
Confidence 346777888888999999999999888877765 22234455443 5666555555543 36777777777777777
Q ss_pred HHHHHHHHcCC
Q 027740 77 NSAEKVRLAGN 87 (219)
Q Consensus 77 ~A~e~i~~~Gn 87 (219)
.+++..+..|-
T Consensus 379 ~~a~lA~~~G~ 389 (457)
T PLN00191 379 EAVKMSKAAGW 389 (457)
T ss_pred HHHHHHHHCCC
Confidence 77776666554
No 191
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=89.18 E-value=2.3 Score=37.26 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=53.0
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE-EeecCC----CCCCC-CCccc----hhHHHHHhcCCCEEEcCCC
Q 027740 58 TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV-CERGTM----FGYND-LIVDP----RNLEWMREANCPVVADVTH 127 (219)
Q Consensus 58 ~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L-~~cgs~----~~~~~-~~~nl----~~i~~lk~~~~pV~~ds~H 127 (219)
.+.|++++-+.+ |++|+..+++.+.. +..-|=| |||-.. -++.. .--|. ..+..+++.++||.+=
T Consensus 66 ~~~~vivnv~~~-~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvK--- 140 (231)
T TIGR00736 66 SRALVSVNVRFV-DLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVK--- 140 (231)
T ss_pred hcCCEEEEEecC-CHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEE---
Confidence 466999999999 99999999999865 4433333 444110 01111 00122 2233344457787651
Q ss_pred CCCCCCCCccCCCCccCCCCc-ccHHHHHHHHHHcCCcEEEE
Q 027740 128 SLQQPAGKKLDGGGVASGGLR-ELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 128 s~~~~~~~~~~~~~~~~~G~~-~~~~~~~~aAvalGA~GlvI 168 (219)
+- .|.. .-...+++++...||+|+.|
T Consensus 141 ---------iR------~~~~~~~~~~~a~~l~~aGad~i~V 167 (231)
T TIGR00736 141 ---------IR------GNCIPLDELIDALNLVDDGFDGIHV 167 (231)
T ss_pred ---------eC------CCCCcchHHHHHHHHHHcCCCEEEE
Confidence 11 0111 11247788999999998877
No 192
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=89.16 E-value=2.9 Score=38.69 Aligned_cols=93 Identities=17% Similarity=0.153 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCCeEeee--CCc------------c-------cHHHHh--hh-ccccccCCC-CC------------
Q 027740 4 GLKILEKVKIAYDIPIVTDV--HET------------V-------QCEEVG--KV-ADIIQIPAF-LC------------ 46 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~--~d~------------~-------~~~~l~--~~-vd~~kI~S~-~~------------ 46 (219)
=|..+.+.|+++|+||+.++ +.. . .+.... ++ +|++|+.-- ++
T Consensus 144 ~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~ 223 (340)
T PRK12858 144 FVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEA 223 (340)
T ss_pred HHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCccccccccccccc
Confidence 36778899999999999984 332 1 122333 37 899999543 22
Q ss_pred -CC----HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC-cEEEEeecC
Q 027740 47 -RQ----TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNP-NVMVCERGT 97 (219)
Q Consensus 47 -~n----~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~-~i~L~~cgs 97 (219)
+. ..+-+.+..+++|+++-.|-. +.+++.+.++.....|.+ +=++|=|.+
T Consensus 224 ~~~~~~~~~f~~~~~a~~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRni 279 (340)
T PRK12858 224 YTQEEAFKLFREQSDATDLPFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRAT 279 (340)
T ss_pred ccHHHHHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHH
Confidence 11 224444555799999955555 789999999888877763 455665544
No 193
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=89.08 E-value=11 Score=35.26 Aligned_cols=102 Identities=17% Similarity=0.276 Sum_probs=69.4
Q ss_pred CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH-H---------------------HHHHcCCCcEEEEeecCC-------
Q 027740 48 QTDLLVAAAKTGKIINIKKGQFCASSVMVNSA-E---------------------KVRLAGNPNVMVCERGTM------- 98 (219)
Q Consensus 48 n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~-e---------------------~i~~~Gn~~i~L~~cgs~------- 98 (219)
...+-+++++.|.|.++||..+.+++|+..+. . ...+.|.+-++|.=-...
T Consensus 99 E~~~ArAA~~~g~~~~lSt~ss~slEev~~~~~~~~~wfQlY~~~dr~~~~~li~RA~~aG~~alvlTvD~p~~g~R~~d 178 (367)
T TIGR02708 99 EVATARGVSEFGSIYTTSSYSTADLPEISEALNGTPHWFQFYMSKDDGINRDIMDRVKADGAKAIVLTADATVGGNREVD 178 (367)
T ss_pred HHHHHHHHHHcCCCeeecccccCCHHHHHhhcCCCceEEEEeccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchhh
Confidence 46788999999999999999999999998763 1 123456654554321100
Q ss_pred ----C--C-----------------C------CCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCc
Q 027740 99 ----F--G-----------------Y------NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLR 148 (219)
Q Consensus 99 ----~--~-----------------~------~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~ 148 (219)
| | + ....++...|.++++ .++||++= .+ +.
T Consensus 179 ~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~i~~l~~~~~~PvivK---Gv----------------~~- 238 (367)
T TIGR02708 179 VRNGFVFPVGMPIVQEYLPTGAGKSMDNVYKSAKQKLSPRDIEEIAGYSGLPVYVK---GP----------------QC- 238 (367)
T ss_pred hhcCCCCCCccchhhhhcccCCccchhhhccccCCCCCHHHHHHHHHhcCCCEEEe---CC----------------CC-
Confidence 0 0 0 011244567888888 78999872 11 11
Q ss_pred ccHHHHHHHHHHcCCcEEEEeeec
Q 027740 149 ELIPCIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 149 ~~~~~~~~aAvalGA~GlvIEkH~ 172 (219)
...+..++..|++|+++--|-
T Consensus 239 ---~eda~~a~~~Gvd~I~VS~HG 259 (367)
T TIGR02708 239 ---PEDADRALKAGASGIWVTNHG 259 (367)
T ss_pred ---HHHHHHHHHcCcCEEEECCcC
Confidence 567888999999999999996
No 194
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=89.02 E-value=8.6 Score=35.64 Aligned_cols=151 Identities=15% Similarity=0.097 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCC------------CCH---HHHHHHHh-cCCeEEE---
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLC------------RQT---DLLVAAAK-TGKIINI--- 64 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~------------~n~---~LL~~~a~-~gkPVil--- 64 (219)
+..|++..++-.-.++.|.||..+...+++. +|++-+|+... +=- ...+++.+ ...|+++
T Consensus 24 i~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDm 103 (332)
T PLN02424 24 LRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDL 103 (332)
T ss_pred HHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCC
Confidence 4456665444456677799999999999999 99999998842 111 33444444 4678887
Q ss_pred eCCCC-CCHHHHHHHHHHH-HHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEE----EcCCCCCCCCCCCccC
Q 027740 65 KKGQF-CASSVMVNSAEKV-RLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVV----ADVTHSLQQPAGKKLD 138 (219)
Q Consensus 65 stG~~-~t~~ei~~A~e~i-~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~----~ds~Hs~~~~~~~~~~ 138 (219)
.-|.. .|+++....+..+ ++.|. +-+=+|.|+. -....|..|-+.++||+ +.|-+.+..
T Consensus 104 PfgSY~~s~e~av~nA~rl~~eaGa-~aVKlEGg~~-------~~~~~I~~l~~~GIPV~gHiGLtPQs~~~l------- 168 (332)
T PLN02424 104 PFGSYESSTDQAVESAVRMLKEGGM-DAVKLEGGSP-------SRVTAAKAIVEAGIAVMGHVGLTPQAISVL------- 168 (332)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhCC-cEEEECCCcH-------HHHHHHHHHHHcCCCEEEeecccceeehhh-------
Confidence 34422 3676665555545 66665 4666776531 01344555555789997 433322110
Q ss_pred CCCccCCCCc----ccHHHHHHHHHHcCCcEEEEeee
Q 027740 139 GGGVASGGLR----ELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 139 ~~~~~~~G~~----~~~~~~~~aAvalGA~GlvIEkH 171 (219)
||-+.- |+. .-+..-+++--++||.++++|.=
T Consensus 169 GGykvq-Gr~~~~a~~li~dA~ale~AGAf~ivLE~V 204 (332)
T PLN02424 169 GGFRPQ-GRTAESAVKVVETALALQEAGCFAVVLECV 204 (332)
T ss_pred cCcccc-CCCHHHHHHHHHHHHHHHHcCCcEEEEcCC
Confidence 110111 111 12334566778899999999973
No 195
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=89.01 E-value=6.2 Score=37.18 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=27.6
Q ss_pred CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 027740 48 QTDLLVAAAKTGKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 48 n~~LL~~~a~~gkPVilstG~~~t~~ei~~A 78 (219)
...+-+++++.|.|.++||-.+.+++|+..+
T Consensus 104 E~a~ArAA~~~gi~~~lSt~ss~slEeIa~~ 134 (383)
T cd03332 104 ELATARAAAELGVPYILSTASSSSIEDVAAA 134 (383)
T ss_pred HHHHHHHHHHcCCCeeecCCCCCCHHHHHhh
Confidence 4678899999999999999988899999876
No 196
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=88.97 E-value=4 Score=38.68 Aligned_cols=91 Identities=19% Similarity=0.213 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhcc----ccccCCCCC--CCHHHHHHHHhcC--CeEEEeCCCCCCHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVAD----IIQIPAFLC--RQTDLLVAAAKTG--KIINIKKGQFCASSVM 75 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd----~~kI~S~~~--~n~~LL~~~a~~g--kPVilstG~~~t~~ei 75 (219)
.++.+++.++++++.++=+|+.+++.+-+.++-. -..|...+. +|..-++.+-..+ --|++|-...+++.|.
T Consensus 267 ai~~~~~lle~~~i~~iEdPl~~~D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGItea 346 (425)
T TIGR01060 267 MIEYYKELVEKYPIVSIEDGLSEEDWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLTET 346 (425)
T ss_pred HHHHHHHHHhcCCcEEEEcCCCcccHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHHHH
Confidence 4556666778899999999999988887766511 244544443 3554444443332 3566666666666666
Q ss_pred HHHHHHHHHcCCCcEEEEee
Q 027740 76 VNSAEKVRLAGNPNVMVCER 95 (219)
Q Consensus 76 ~~A~e~i~~~Gn~~i~L~~c 95 (219)
.++++..+..|- .+++.||
T Consensus 347 ~~ia~lA~~~Gi-~~vv~h~ 365 (425)
T TIGR01060 347 LDAVELAKKAGY-TAVISHR 365 (425)
T ss_pred HHHHHHHHHcCC-cEEEecC
Confidence 666666665543 2445555
No 197
>PLN02979 glycolate oxidase
Probab=88.90 E-value=17 Score=34.19 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH
Q 027740 49 TDLLVAAAKTGKIINIKKGQFCASSVMVNSA 79 (219)
Q Consensus 49 ~~LL~~~a~~gkPVilstG~~~t~~ei~~A~ 79 (219)
..+-+++++.|.|.++||-.+.+++|+..+.
T Consensus 89 ~a~ARAA~~agi~~~lSt~ss~slEeIa~a~ 119 (366)
T PLN02979 89 YATARAASAAGTIMTLSSWATSSVEEVASTG 119 (366)
T ss_pred HHHHHHHHHcCCCeeeccCcCCCHHHHHhcc
Confidence 4788999999999999999999999998663
No 198
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=88.85 E-value=1.8 Score=37.00 Aligned_cols=105 Identities=12% Similarity=0.109 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCC------CCCC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCC
Q 027740 71 ASSVMVNSAEKVRLAGNPNVMVCERGTMF------GYND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGG 141 (219)
Q Consensus 71 t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~------~~~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~ 141 (219)
..++++.+++.+...|...+.++-..|.+ +... +.++ ...+...|+.+..|.+...++.
T Consensus 65 ~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~------------ 132 (237)
T PF00682_consen 65 NEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS------------ 132 (237)
T ss_dssp CHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG------------
T ss_pred hHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc------------
Confidence 78999999998889999888888766631 1100 0010 1223333446777777666652
Q ss_pred ccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 027740 142 VASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 142 ~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i 200 (219)
.-..+.+...+..+..+|++.+. ++|..-.++|+++.++++.+++.
T Consensus 133 ---~~~~~~~~~~~~~~~~~g~~~i~----------l~Dt~G~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 133 ---RTDPEELLELAEALAEAGADIIY----------LADTVGIMTPEDVAELVRALREA 178 (237)
T ss_dssp ---GSSHHHHHHHHHHHHHHT-SEEE----------EEETTS-S-HHHHHHHHHHHHHH
T ss_pred ---cccHHHHHHHHHHHHHcCCeEEE----------eeCccCCcCHHHHHHHHHHHHHh
Confidence 01234566778888999998332 47889999999999999988864
No 199
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=88.82 E-value=15 Score=31.92 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=90.1
Q ss_pred HHHHHHHHhcCCCeEe----e--eCCccc-HHHHhhh-ccccccCC--CCC--CCHHHHHHHHhcCCeEEEeCCCCCCHH
Q 027740 6 KILEKVKIAYDIPIVT----D--VHETVQ-CEEVGKV-ADIIQIPA--FLC--RQTDLLVAAAKTGKIINIKKGQFCASS 73 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~t----t--~~d~~~-~~~l~~~-vd~~kI~S--~~~--~n~~LL~~~a~~gkPVilstG~~~t~~ 73 (219)
++++++++...+|+.- . ..+++. ++.+.+. ++.+-|.. .+. .-..+++.+-+.|+..++--...-+.+
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e 143 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDL 143 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence 6788888778888742 2 223443 4455555 77777764 221 234788888889976666666652466
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCC-CCCccc-hhHHHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcc
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERGTMFGYN-DLIVDP-RNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 149 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~-~~~~nl-~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~ 149 (219)
++...++. .+.++++ +++.++. ....++ ..+..+|+ . +.||.+|.-=+ .
T Consensus 144 ~l~~~~~~-----~~~~l~m--sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI~-----------------~--- 196 (244)
T PRK13125 144 LIHRLSKL-----SPLFIYY--GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGLD-----------------S--- 196 (244)
T ss_pred HHHHHHHh-----CCCEEEE--EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCcC-----------------C---
Confidence 66665542 2346555 3331111 111232 35667777 5 57887652211 1
Q ss_pred cHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 150 LIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 150 ~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
..-...+...||||+++=+.+- +.+.+. +.+++.++++.++.
T Consensus 197 --~e~i~~~~~~gaD~vvvGSai~--~~~~~~----~~~~~~~~~~~~~~ 238 (244)
T PRK13125 197 --PEDARDALSAGADGVVVGTAFI--EELEKN----GVESALNLLKKIRG 238 (244)
T ss_pred --HHHHHHHHHcCCCEEEECHHHH--HHHHhc----CHHHHHHHHHHHHH
Confidence 3445567799999999987753 100011 15566666655543
No 200
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=88.74 E-value=2.7 Score=37.45 Aligned_cols=85 Identities=8% Similarity=-0.038 Sum_probs=66.2
Q ss_pred HHHHHHHHHhc---CCCeE-eeeCCcccHHHHhhh-cccccc-----CCC-CCCCHHHHHHHHh-cCCeEEEeCCCCCCH
Q 027740 5 LKILEKVKIAY---DIPIV-TDVHETVQCEEVGKV-ADIIQI-----PAF-LCRQTDLLVAAAK-TGKIINIKKGQFCAS 72 (219)
Q Consensus 5 l~~L~~~~~~~---Gi~~~-tt~~d~~~~~~l~~~-vd~~kI-----~S~-~~~n~~LL~~~a~-~gkPVilstG~~~t~ 72 (219)
+..+-+.|+++ |+.++ -..-|+..+..++++ ++++-. ||+ -+.|.++++.+.+ .+.|||.--|.. |+
T Consensus 109 ~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~-tp 187 (248)
T cd04728 109 PIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIG-TP 187 (248)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCC-CH
Confidence 45667788888 99999 788899999999998 777643 444 3448999999988 578999999999 99
Q ss_pred HHHHHHHHHHHHcCCCcEEEEee
Q 027740 73 SVMVNSAEKVRLAGNPNVMVCER 95 (219)
Q Consensus 73 ~ei~~A~e~i~~~Gn~~i~L~~c 95 (219)
+|...|.| .|.. -+++-.
T Consensus 188 eda~~Ame----lGAd-gVlV~S 205 (248)
T cd04728 188 SDAAQAME----LGAD-AVLLNT 205 (248)
T ss_pred HHHHHHHH----cCCC-EEEECh
Confidence 99998877 5664 334433
No 201
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=88.70 E-value=3.6 Score=36.47 Aligned_cols=141 Identities=17% Similarity=0.116 Sum_probs=84.8
Q ss_pred HHHhhh-ccccccCCCCCCC--HHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------
Q 027740 30 EEVGKV-ADIIQIPAFLCRQ--TDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------ 99 (219)
Q Consensus 30 ~~l~~~-vd~~kI~S~~~~n--~~LL~~~a~~gk-PVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~------ 99 (219)
+.|.+. ++.+.+|+.-... .+-.+.+++.++ +-+..-... ..++++.|++ .|.+.|.++-++|.+
T Consensus 29 ~~L~~~Gv~~IEvG~P~~~~~~~~~~~~l~~~~~~~~v~~~~r~-~~~di~~a~~----~g~~~i~i~~~~S~~~~~~~~ 103 (262)
T cd07948 29 KALDAFGVDYIELTSPAASPQSRADCEAIAKLGLKAKILTHIRC-HMDDARIAVE----TGVDGVDLVFGTSPFLREASH 103 (262)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHHHhCCCCCcEEEEecC-CHHHHHHHHH----cCcCEEEEEEecCHHHHHHHh
Confidence 344555 7777776644332 233455555444 333333333 8888888866 588888888877641
Q ss_pred CCCC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCC
Q 027740 100 GYND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 176 (219)
Q Consensus 100 ~~~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~ 176 (219)
+... +.++ ...+...|..++.|.+....+.. -..+.+..+...+..+|++.+
T Consensus 104 ~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r---------------~~~~~l~~~~~~~~~~g~~~i---------- 158 (262)
T cd07948 104 GKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFR---------------SDLVDLLRVYRAVDKLGVNRV---------- 158 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCC---------------CCHHHHHHHHHHHHHcCCCEE----------
Confidence 1111 1111 11223334457888775544421 113456677788899999832
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHH
Q 027740 177 APVDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 177 a~~D~~~sl~p~el~~lv~~ir~i 200 (219)
.++|..-.++|++..++++.+++.
T Consensus 159 ~l~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 159 GIADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred EECCcCCCCCHHHHHHHHHHHHHh
Confidence 257999999999999999998863
No 202
>PRK00077 eno enolase; Provisional
Probab=88.67 E-value=4.5 Score=38.31 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=62.3
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhhcc----ccccCCCCC--CCHHHHHHHHhcC--CeEEEeCCCCCCHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVAD----IIQIPAFLC--RQTDLLVAAAKTG--KIINIKKGQFCASSVMV 76 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd----~~kI~S~~~--~n~~LL~~~a~~g--kPVilstG~~~t~~ei~ 76 (219)
...+.+.++++++.++=+|+++++.+-+.++.. -..|...+. +|..-++.+-+.+ --|++|-+..+++.|..
T Consensus 267 ~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~~~GGitea~ 346 (425)
T PRK00077 267 IDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVNQIGTLTETL 346 (425)
T ss_pred HHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCccccCCHHHHH
Confidence 566677788899999999999988887777622 256666663 4665555554433 36777777777888888
Q ss_pred HHHHHHHHcCCCcEEEEeec
Q 027740 77 NSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 77 ~A~e~i~~~Gn~~i~L~~cg 96 (219)
.++...+..|- .+++-||.
T Consensus 347 ~ia~lA~~~gi-~~~vsh~s 365 (425)
T PRK00077 347 DAIELAKRAGY-TAVVSHRS 365 (425)
T ss_pred HHHHHHHHcCC-eEEEeCCC
Confidence 87777776654 24444653
No 203
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=88.66 E-value=4.3 Score=35.79 Aligned_cols=83 Identities=11% Similarity=0.133 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCCCeEeee----------CCccc----HHHHhhh-ccccccCCCCCCCHHHHHHHHh-cCCeEEEeCC
Q 027740 4 GLKILEKVKIAYDIPIVTDV----------HETVQ----CEEVGKV-ADIIQIPAFLCRQTDLLVAAAK-TGKIINIKKG 67 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~----------~d~~~----~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~-~gkPVilstG 67 (219)
=+..+.+.|+++|++++.-. ++++. +....++ +|++|.... ....+++++.+ ...||..+=|
T Consensus 127 ~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~--~~~~~l~~~~~~~~ipV~a~GG 204 (267)
T PRK07226 127 DLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYT--GDPESFREVVEGCPVPVVIAGG 204 (267)
T ss_pred HHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCC--CCHHHHHHHHHhCCCCEEEEeC
Confidence 35677888999999998742 22222 3334456 899999732 35677877775 5899999999
Q ss_pred CCC-CHHHHHHHHHHHHHcCCC
Q 027740 68 QFC-ASSVMVNSAEKVRLAGNP 88 (219)
Q Consensus 68 ~~~-t~~ei~~A~e~i~~~Gn~ 88 (219)
... |.++...-++.+.+.|..
T Consensus 205 i~~~~~~~~l~~v~~~~~aGA~ 226 (267)
T PRK07226 205 PKTDTDREFLEMVRDAMEAGAA 226 (267)
T ss_pred CCCCCHHHHHHHHHHHHHcCCc
Confidence 885 577777777777778876
No 204
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=88.62 E-value=9.3 Score=34.14 Aligned_cols=135 Identities=18% Similarity=0.223 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCC---HHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n---~~LL~~~a~~gkPVilstG~~~t~~ei~~A 78 (219)
++.|++.++...+|++. =+.|+.|++....+ .|++.+-..-+.+ ..|+..+.++|+-+++... +.+|+..|
T Consensus 96 ~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh---~~eEl~rA 172 (254)
T COG0134 96 FEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVH---NEEELERA 172 (254)
T ss_pred HHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEEC---CHHHHHHH
Confidence 67788899999999999 46789999988877 8876666555554 4788888889999999987 88999998
Q ss_pred HHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh--cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHH
Q 027740 79 AEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIAR 156 (219)
Q Consensus 79 ~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~--~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 156 (219)
++ .|.+=|-+=.| +.....+|+.....|.. ..-.+.+ +-| |... +.-.+
T Consensus 173 l~----~ga~iIGINnR----dL~tf~vdl~~t~~la~~~p~~~~~I--sES-----------------GI~~--~~dv~ 223 (254)
T COG0134 173 LK----LGAKIIGINNR----DLTTLEVDLETTEKLAPLIPKDVILI--SES-----------------GIST--PEDVR 223 (254)
T ss_pred Hh----CCCCEEEEeCC----CcchheecHHHHHHHHhhCCCCcEEE--ecC-----------------CCCC--HHHHH
Confidence 76 35432222233 34456688888777754 1212222 222 2211 33345
Q ss_pred HHHHcCCcEEEEeee
Q 027740 157 TAIAVGVDGVFMEVH 171 (219)
Q Consensus 157 aAvalGA~GlvIEkH 171 (219)
-....||+|++|=..
T Consensus 224 ~l~~~ga~a~LVG~s 238 (254)
T COG0134 224 RLAKAGADAFLVGEA 238 (254)
T ss_pred HHHHcCCCEEEecHH
Confidence 667789999888544
No 205
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=88.61 E-value=2.4 Score=39.30 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh--ccccccCCCCCCCH----HHHHHHHh---------cCCeEEEeCC
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV--ADIIQIPAFLCRQT----DLLVAAAK---------TGKIINIKKG 67 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~--vd~~kI~S~~~~n~----~LL~~~a~---------~gkPVilstG 67 (219)
+-|..|.++|+++|+.++.|+|+.++++...++ ++++-|-.||+..+ .--..+.. .+.-++-..|
T Consensus 217 ~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRdL~Tf~vDl~~t~~L~~~~~~~~i~~~~~~~VsESG 296 (338)
T PLN02460 217 LDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRSLETFEVDISNTKKLLEGERGEQIREKGIIVVGESG 296 (338)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCcceECHHHHHHHhhhccccccCCCCeEEEECCC
Confidence 358999999999999999999999999988775 88999999988632 21222222 2333455588
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 68 QFCASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 68 ~~~t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
.. |.+|+.. +++.|..-+.+-+
T Consensus 297 I~-t~~Dv~~----l~~~GadAvLVGE 318 (338)
T PLN02460 297 LF-TPDDVAY----VQNAGVKAVLVGE 318 (338)
T ss_pred CC-CHHHHHH----HHHCCCCEEEECH
Confidence 88 9999875 4557765554444
No 206
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=88.58 E-value=2.5 Score=40.26 Aligned_cols=118 Identities=21% Similarity=0.198 Sum_probs=70.3
Q ss_pred CCcccHHHHhhh-ccccccCCCC---CCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-eec
Q 027740 24 HETVQCEEVGKV-ADIIQIPAFL---CRQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-ERG 96 (219)
Q Consensus 24 ~d~~~~~~l~~~-vd~~kI~S~~---~~n~~LL~~~a~~--gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~-~cg 96 (219)
.+.+.++.+.+. +|++-|-+.+ ....+.++++.+. +.||+..+. .|.++...+++ .|..-|.+. +.|
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v--~t~~~a~~l~~----aGad~i~vg~g~G 297 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNV--ATAEQAKALID----AGADGLRVGIGPG 297 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHH----hCCCEEEECCCCC
Confidence 444556666666 8888877632 2335667777665 689999665 46888887765 576544433 333
Q ss_pred CC--------CCCCCCCccchhHHHH----HhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCc
Q 027740 97 TM--------FGYNDLIVDPRNLEWM----REANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 164 (219)
Q Consensus 97 s~--------~~~~~~~~nl~~i~~l----k~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~ 164 (219)
+. .++| .+.++... +++++||+.|. |.+. +.-..-|.++||+
T Consensus 298 ~~~~t~~~~~~g~p----~~~~i~~~~~~~~~~~vpviadG--------------------Gi~~--~~di~kAla~GA~ 351 (450)
T TIGR01302 298 SICTTRIVAGVGVP----QITAVYDVAEYAAQSGIPVIADG--------------------GIRY--SGDIVKALAAGAD 351 (450)
T ss_pred cCCccceecCCCcc----HHHHHHHHHHHHhhcCCeEEEeC--------------------CCCC--HHHHHHHHHcCCC
Confidence 21 0222 23444433 23689998752 2221 2234578999999
Q ss_pred EEEEeeecC
Q 027740 165 GVFMEVHDD 173 (219)
Q Consensus 165 GlvIEkH~t 173 (219)
.+|+=.-|+
T Consensus 352 ~V~~G~~~a 360 (450)
T TIGR01302 352 AVMLGSLLA 360 (450)
T ss_pred EEEECchhh
Confidence 998876554
No 207
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=88.57 E-value=9.5 Score=34.31 Aligned_cols=110 Identities=17% Similarity=0.245 Sum_probs=68.5
Q ss_pred ccccccCCCCCCCHHHHH----HHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLLV----AAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL~----~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|++.++ ++-+++.||||..... +.+ ++ +.+ .-...+
T Consensus 15 ~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~-~~~--------------------~~----~~~---~~~~~~ 66 (281)
T PRK06806 15 QENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEV-RLN--------------------HS----PLH---LIGPLM 66 (281)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcc-hhc--------------------cC----ChH---HHHHHH
Confidence 456889999999976554 4555788998887654 110 01 111 001222
Q ss_pred HHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHH
Q 027740 112 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNL 190 (219)
Q Consensus 112 ~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el 190 (219)
..+.+ +.+||.+--||.. . ......|+..|++-+++- .+ +++.+|.
T Consensus 67 ~~~a~~~~vpv~lHlDH~~----------------~-----~e~i~~Al~~G~tsVm~d-----------~s-~~~~~en 113 (281)
T PRK06806 67 VAAAKQAKVPVAVHFDHGM----------------T-----FEKIKEALEIGFTSVMFD-----------GS-HLPLEEN 113 (281)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCEEEEc-----------CC-CCCHHHH
Confidence 23333 7899999889973 2 566778999999865553 22 2456677
Q ss_pred HHHHHHHHHHHHHhCC
Q 027740 191 EELLEELVAIAKVSKG 206 (219)
Q Consensus 191 ~~lv~~ir~i~~~lg~ 206 (219)
-++.++++++-...|-
T Consensus 114 i~~t~~v~~~a~~~gv 129 (281)
T PRK06806 114 IQKTKEIVELAKQYGA 129 (281)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7777777776665543
No 208
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.49 E-value=17 Score=32.10 Aligned_cols=144 Identities=22% Similarity=0.259 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHh-cCCCeE-eeeCCc-------ccHHHHhhh-ccccccCCCCCCC-HHHHHHHHhcCC-eEEEeCCCC
Q 027740 2 VEGLKILEKVKIA-YDIPIV-TDVHET-------VQCEEVGKV-ADIIQIPAFLCRQ-TDLLVAAAKTGK-IINIKKGQF 69 (219)
Q Consensus 2 ~~gl~~L~~~~~~-~Gi~~~-tt~~d~-------~~~~~l~~~-vd~~kI~S~~~~n-~~LL~~~a~~gk-PVilstG~~ 69 (219)
...|..+++.+++ .+++++ =+.+++ .-++.+.+. ++.+-|+---... .++++.+-+.|. ++++=+...
T Consensus 72 ~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T 151 (256)
T TIGR00262 72 EKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNA 151 (256)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 3567888888876 678844 355665 224445555 6666666433332 467777777885 566777766
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEee-cCCCCCC--CCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCC
Q 027740 70 CASSVMVNSAEKVRLAGNPNVMVCER-GTMFGYN--DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASG 145 (219)
Q Consensus 70 ~t~~ei~~A~e~i~~~Gn~~i~L~~c-gs~~~~~--~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~ 145 (219)
+.+.+...++. ...-+.++-. |.+ +.. ...-....+..+|+ ++.||.++-
T Consensus 152 -~~eri~~i~~~----~~gfiy~vs~~G~T-G~~~~~~~~~~~~i~~lr~~~~~pi~vgf-------------------- 205 (256)
T TIGR00262 152 -DDERLKQIAEK----SQGFVYLVSRAGVT-GARNRAASALNELVKRLKAYSAKPVLVGF-------------------- 205 (256)
T ss_pred -CHHHHHHHHHh----CCCCEEEEECCCCC-CCcccCChhHHHHHHHHHhhcCCCEEEeC--------------------
Confidence 77777665542 2222332221 111 111 01113456777777 788987742
Q ss_pred CCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 146 GLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 146 G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
|.+. +..+..+...||||+++=+.+.
T Consensus 206 GI~~--~e~~~~~~~~GADgvVvGSaiv 231 (256)
T TIGR00262 206 GISK--PEQVKQAIDAGADGVIVGSAIV 231 (256)
T ss_pred CCCC--HHHHHHHHHcCCCEEEECHHHH
Confidence 2110 3456678999999999988764
No 209
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=88.48 E-value=16 Score=32.40 Aligned_cols=142 Identities=19% Similarity=0.265 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-CCeEEEeC----CCCCCHH---
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-GKIINIKK----GQFCASS--- 73 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-gkPVilst----G~~~t~~--- 73 (219)
+..+++.+++..+++=. =+.+.++++.+-+. ++..-+|+.-+.|.++++++.+. |--|+++- |.. ..+
T Consensus 64 ~~~i~~i~~~~~~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~v-av~GW~ 142 (241)
T COG0106 64 LEAIKEILEATDVPVQVGGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKV-AVSGWQ 142 (241)
T ss_pred HHHHHHHHHhCCCCEEeeCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcc-cccccc
Confidence 56788888888766544 78999999999888 99999999999999999998885 44444431 111 111
Q ss_pred -----HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCC
Q 027740 74 -----VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGL 147 (219)
Q Consensus 74 -----ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~ 147 (219)
+....++.+.+.|...+ ||+-.+.=+.- .=+|...+..+.+ +++||.+. +|.
T Consensus 143 e~s~~~~~~l~~~~~~~g~~~i-i~TdI~~DGtl-~G~n~~l~~~l~~~~~ipviaS--------------------GGv 200 (241)
T COG0106 143 EDSGVELEELAKRLEEVGLAHI-LYTDISRDGTL-SGPNVDLVKELAEAVDIPVIAS--------------------GGV 200 (241)
T ss_pred ccccCCHHHHHHHHHhcCCCeE-EEEeccccccc-CCCCHHHHHHHHHHhCcCEEEe--------------------cCc
Confidence 33445567788888655 56555542211 2257777888877 89999872 343
Q ss_pred cccHHHHHHHHHHc-CCcEEEEeee
Q 027740 148 RELIPCIARTAIAV-GVDGVFMEVH 171 (219)
Q Consensus 148 ~~~~~~~~~aAval-GA~GlvIEkH 171 (219)
+++-. -+++..+ |+.|+++=+-
T Consensus 201 ~s~~D--i~~l~~~~G~~GvIvG~A 223 (241)
T COG0106 201 SSLDD--IKALKELSGVEGVIVGRA 223 (241)
T ss_pred CCHHH--HHHHHhcCCCcEEEEehH
Confidence 33212 2344555 8999988664
No 210
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=88.45 E-value=2.4 Score=36.41 Aligned_cols=83 Identities=13% Similarity=0.064 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccC--------CCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIP--------AFLCRQTDLLVAAAKTGKIINIKKGQFCASSVM 75 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~--------S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei 75 (219)
|..|.+..++.+..+|+++-+.++.....++ +|++-.- ..+--|++|++++.+.+.|||-.=+.. |+++.
T Consensus 81 l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~-tpe~a 159 (192)
T PF04131_consen 81 LEELIREIKEKYQLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIH-TPEQA 159 (192)
T ss_dssp HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS---SHHHH
T ss_pred HHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCC-CHHHH
Confidence 5667777777789999999999999999888 8865321 113447999999999999999998888 99998
Q ss_pred HHHHHHHHHcCCCcEEE
Q 027740 76 VNSAEKVRLAGNPNVMV 92 (219)
Q Consensus 76 ~~A~e~i~~~Gn~~i~L 92 (219)
.++.+ .|..-+++
T Consensus 160 ~~al~----~GA~aVVV 172 (192)
T PF04131_consen 160 AKALE----LGAHAVVV 172 (192)
T ss_dssp HHHHH----TT-SEEEE
T ss_pred HHHHh----cCCeEEEE
Confidence 88765 56554544
No 211
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=88.39 E-value=7.6 Score=35.97 Aligned_cols=140 Identities=11% Similarity=0.122 Sum_probs=84.5
Q ss_pred HHhhh-ccccccCCCCCCC--HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------CC
Q 027740 31 EVGKV-ADIIQIPAFLCRQ--TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------GY 101 (219)
Q Consensus 31 ~l~~~-vd~~kI~S~~~~n--~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~------~~ 101 (219)
.|.++ ++.+-+|+.-... ++.++.+.+.+.+.-+..-.-...++++.|++ .|.+.+.++-..|.. +.
T Consensus 30 ~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~----~g~~~i~i~~~~Sd~~~~~~~~~ 105 (363)
T TIGR02090 30 KLDELGVDVIEAGFPIASEGEFEAIKKISQEGLNAEICSLARALKKDIDKAID----CGVDSIHTFIATSPIHLKYKLKK 105 (363)
T ss_pred HHHHcCCCEEEEeCCCCChHHHHHHHHHHhcCCCcEEEEEcccCHHHHHHHHH----cCcCEEEEEEcCCHHHHHHHhCC
Confidence 34455 7777777665543 44577777766544444333337788777654 577777777666531 11
Q ss_pred CC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCC
Q 027740 102 ND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP 178 (219)
Q Consensus 102 ~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~ 178 (219)
.. +.++ ...+...|+.++.|.+....+. .-..+++..++.++..+|++.+. +
T Consensus 106 ~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~---------------r~~~~~l~~~~~~~~~~g~~~i~----------l 160 (363)
T TIGR02090 106 SRDEVLEKAVEAVEYAKEHGLIVEFSAEDAT---------------RTDIDFLIKVFKRAEEAGADRIN----------I 160 (363)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEeecC---------------CCCHHHHHHHHHHHHhCCCCEEE----------E
Confidence 10 0011 1233334445777766433321 01245667778889999998422 4
Q ss_pred CCCCCCCChHHHHHHHHHHHH
Q 027740 179 VDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 179 ~D~~~sl~p~el~~lv~~ir~ 199 (219)
+|..-.++|+++.++++.+++
T Consensus 161 ~DT~G~~~P~~v~~li~~l~~ 181 (363)
T TIGR02090 161 ADTVGVLTPQKMEELIKKLKE 181 (363)
T ss_pred eCCCCccCHHHHHHHHHHHhc
Confidence 688889999999999999875
No 212
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=88.30 E-value=4.6 Score=38.08 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh---c-cccccCCCCC--CCHHHHHHHHhcC--CeEEEeCCCCCCHHH
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---A-DIIQIPAFLC--RQTDLLVAAAKTG--KIINIKKGQFCASSV 74 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~---v-d~~kI~S~~~--~n~~LL~~~a~~g--kPVilstG~~~t~~e 74 (219)
+.++.+++.+++++|.++=+|+.+++.+-+.++ + .-..|...+. +|..-++.+-+.+ --|++|-...+++.|
T Consensus 265 eai~~~~~l~e~~~i~~iEdPl~~~D~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite 344 (408)
T cd03313 265 ELIDYYKELVKKYPIVSIEDPFDEDDWEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTE 344 (408)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCCCcCHHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHH
Confidence 446667778888999999999999888877776 2 2356656663 4666666555544 478888888889999
Q ss_pred HHHHHHHHHHcCCCcEEEEee
Q 027740 75 MVNSAEKVRLAGNPNVMVCER 95 (219)
Q Consensus 75 i~~A~e~i~~~Gn~~i~L~~c 95 (219)
+.+++...++.|- .+++-||
T Consensus 345 ~~~ia~lA~~~G~-~~~~sh~ 364 (408)
T cd03313 345 TIEAIKLAKKNGY-GVVVSHR 364 (408)
T ss_pred HHHHHHHHHHcCC-eEEccCC
Confidence 9999988888776 4555577
No 213
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=88.28 E-value=11 Score=33.51 Aligned_cols=135 Identities=24% Similarity=0.304 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-cccc-ccCCCCCCCH--HHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADII-QIPAFLCRQT--DLLVAAAKTGKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~-kI~S~~~~n~--~LL~~~a~~gkPVilstG~~~t~~ei~~ 77 (219)
.+.-|.++++..++|++. =+.|+.|+.....+ .|.+ -|.+..-... .|++.+-++|+-+++... +.+|++.
T Consensus 97 s~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh---~~~El~~ 173 (254)
T PF00218_consen 97 SLEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVH---NEEELER 173 (254)
T ss_dssp HHHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEES---SHHHHHH
T ss_pred CHHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEEC---CHHHHHH
Confidence 477889999999999999 46688888887777 8874 4444444444 889999999999999987 8999998
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHH
Q 027740 78 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCI 154 (219)
Q Consensus 78 A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~ 154 (219)
|++ .|..=|.+=.| +.....+|+.....|.. . ++.++.- | |... +.-
T Consensus 174 al~----~~a~iiGINnR----dL~tf~vd~~~~~~l~~~ip~~~~~ise---S-----------------GI~~--~~d 223 (254)
T PF00218_consen 174 ALE----AGADIIGINNR----DLKTFEVDLNRTEELAPLIPKDVIVISE---S-----------------GIKT--PED 223 (254)
T ss_dssp HHH----TT-SEEEEESB----CTTTCCBHTHHHHHHHCHSHTTSEEEEE---S-----------------S-SS--HHH
T ss_pred HHH----cCCCEEEEeCc----cccCcccChHHHHHHHhhCccceeEEee---c-----------------CCCC--HHH
Confidence 864 46554444444 23445678877777764 2 3323221 1 2111 344
Q ss_pred HHHHHHcCCcEEEEeee
Q 027740 155 ARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 155 ~~aAvalGA~GlvIEkH 171 (219)
.......|+||++|=..
T Consensus 224 ~~~l~~~G~davLVGe~ 240 (254)
T PF00218_consen 224 ARRLARAGADAVLVGEA 240 (254)
T ss_dssp HHHHCTTT-SEEEESHH
T ss_pred HHHHHHCCCCEEEECHH
Confidence 55667889999998655
No 214
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=88.15 E-value=11 Score=34.41 Aligned_cols=94 Identities=23% Similarity=0.271 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCcc--chhHHHHHh-cCCCEEEc
Q 027740 49 TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVD--PRNLEWMRE-ANCPVVAD 124 (219)
Q Consensus 49 ~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~~~~n--l~~i~~lk~-~~~pV~~d 124 (219)
.++++.+-..|..|+..-+ |+++.+.++ +.| -+.++++ |..- +.....+. +.-++.++. .++||+.-
T Consensus 126 ~~~i~~l~~~gi~v~~~v~---s~~~A~~a~----~~G-~D~iv~q-G~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaA 196 (330)
T PF03060_consen 126 PEVIERLHAAGIKVIPQVT---SVREARKAA----KAG-ADAIVAQ-GPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAA 196 (330)
T ss_dssp HHHHHHHHHTT-EEEEEES---SHHHHHHHH----HTT--SEEEEE--TTSSEE---SSG-HHHHHHHHHHH-SS-EEEE
T ss_pred HHHHHHHHHcCCccccccC---CHHHHHHhh----hcC-CCEEEEe-ccccCCCCCccccceeeHHHHHhhhcCCcEEEe
Confidence 5667777778888887665 777766543 345 4676766 3321 11111222 333555666 78999871
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 125 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 125 s~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
|+...| .-..+|.++||+|+.+=.-|-
T Consensus 197 ----------------GGI~dg------~~iaaal~lGA~gV~~GTrFl 223 (330)
T PF03060_consen 197 ----------------GGIADG------RGIAAALALGADGVQMGTRFL 223 (330)
T ss_dssp ----------------SS--SH------HHHHHHHHCT-SEEEESHHHH
T ss_pred ----------------cCcCCH------HHHHHHHHcCCCEeecCCeEE
Confidence 222222 234588999999999877654
No 215
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=88.14 E-value=18 Score=32.95 Aligned_cols=71 Identities=17% Similarity=0.321 Sum_probs=46.2
Q ss_pred cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCC-CCCCCCChHHHHHHHH
Q 027740 117 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV-DGPTQWPLRNLEELLE 195 (219)
Q Consensus 117 ~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~-D~~~sl~p~el~~lv~ 195 (219)
.++||.+|.|+.. |...-+....+.....|+.|+=||-+.-|.|.=- +++.=. .+.++++
T Consensus 77 ~~lPv~vD~dtGf----------------G~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~---~~~e~v~ 137 (289)
T COG2513 77 VDLPVLVDIDTGF----------------GEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELV---SIDEMVD 137 (289)
T ss_pred cCCceEEeccCCC----------------CcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcC---CHHHHHH
Confidence 5799999999875 4322234445567899999999998877654321 333333 3455667
Q ss_pred HHHHHHHHhCC
Q 027740 196 ELVAIAKVSKG 206 (219)
Q Consensus 196 ~ir~i~~~lg~ 206 (219)
.|+.+.++..+
T Consensus 138 rIkAa~~a~~~ 148 (289)
T COG2513 138 RIKAAVEARRD 148 (289)
T ss_pred HHHHHHHhccC
Confidence 77777666543
No 216
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=88.11 E-value=17 Score=35.50 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=91.1
Q ss_pred HHHHhhh-ccccccCC--CCCCCH-HHHHHHHhcCCeE--EE--eCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 027740 29 CEEVGKV-ADIIQIPA--FLCRQT-DLLVAAAKTGKII--NI--KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG 100 (219)
Q Consensus 29 ~~~l~~~-vd~~kI~S--~~~~n~-~LL~~~a~~gkPV--il--stG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~ 100 (219)
++...+. +|++-|.- .++.|. ..++++-+.|+-+ .| ..+.-.|++.+.+.++.+.+.|...|.|+.-....
T Consensus 103 v~~a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll- 181 (499)
T PRK12330 103 VEKSAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICIKDMAALL- 181 (499)
T ss_pred HHHHHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEeCCCccCC-
Confidence 3333333 55544432 244443 3344555566633 22 22334499999999999999999888888765431
Q ss_pred CCCCCccchhHHHHHh-c--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCC--
Q 027740 101 YNDLIVDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPL-- 175 (219)
Q Consensus 101 ~~~~~~nl~~i~~lk~-~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d-- 175 (219)
.| ..+ ..-+..+|+ + ++||.+ +.|.. .|. -..-.++|+.+||+ +|+.-..+=
T Consensus 182 ~P-~~~-~~LV~~Lk~~~~~~ipI~~-H~Hnt---------------~Gl---A~An~laAieAGad--~vDtai~Glg~ 238 (499)
T PRK12330 182 KP-QPA-YDIVKGIKEACGEDTRINL-HCHST---------------TGV---TLVSLMKAIEAGVD--VVDTAISSMSL 238 (499)
T ss_pred CH-HHH-HHHHHHHHHhCCCCCeEEE-EeCCC---------------CCc---HHHHHHHHHHcCCC--EEEeecccccc
Confidence 22 112 244666777 6 699999 88874 242 24557899999999 888765542
Q ss_pred CC-----------C--CCCCCCCChHHHHHHHHHHHHHHHHh
Q 027740 176 NA-----------P--VDGPTQWPLRNLEELLEELVAIAKVS 204 (219)
Q Consensus 176 ~a-----------~--~D~~~sl~p~el~~lv~~ir~i~~~l 204 (219)
++ + .....-++.+.|.++-+.+++++...
T Consensus 239 ~aGn~atE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~~y 280 (499)
T PRK12330 239 GPGHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRPKY 280 (499)
T ss_pred cccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 11 0 13344567777766666555555444
No 217
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=88.07 E-value=2 Score=32.04 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=42.8
Q ss_pred HHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCC-CCCCCChHHH
Q 027740 112 EWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD-GPTQWPLRNL 190 (219)
Q Consensus 112 ~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D-~~~sl~p~el 190 (219)
..++..++.|++|+.|.+ ++ ..+....-.+|++ +++.|..+|...+. +..--..+.+
T Consensus 15 ~~~~~~~~kivvD~~~G~---------------~~-----~~~~~ll~~lg~~--~~~~n~~~d~~f~~~~~p~p~~~~l 72 (104)
T PF02879_consen 15 EAIKKSGLKIVVDCMNGA---------------GS-----DILPRLLERLGCD--VIELNCDPDPDFPNQHAPNPEEESL 72 (104)
T ss_dssp HHHHHTTCEEEEE-TTST---------------TH-----HHHHHHHHHTTCE--EEEESSS-STTGTTTSTSSTSTTTT
T ss_pred hhcccCCCEEEEECCCCH---------------HH-----HHHHHHHHHcCCc--EEEEecccccccccccccccccchh
Confidence 344556789999999985 23 5566777889998 88899988887764 2222122456
Q ss_pred HHHHHHHHHH
Q 027740 191 EELLEELVAI 200 (219)
Q Consensus 191 ~~lv~~ir~i 200 (219)
+.+.+.+++.
T Consensus 73 ~~~~~~v~~~ 82 (104)
T PF02879_consen 73 QRLIKIVRES 82 (104)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHhhcc
Confidence 6665555544
No 218
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=88.05 E-value=3.4 Score=37.01 Aligned_cols=90 Identities=28% Similarity=0.295 Sum_probs=52.1
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-----CCCC-CCccc----hhHHHHHh-cCCCEEEcCCC
Q 027740 59 GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-----GYND-LIVDP----RNLEWMRE-ANCPVVADVTH 127 (219)
Q Consensus 59 gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-----~~~~-~~~nl----~~i~~lk~-~~~pV~~ds~H 127 (219)
++|++.+.-...+.+||..+++.+.+.|.. .+=+-+++-- ++.. ..-|. ..+..+|+ .++||.+= -
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad-~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vK--l 175 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGAD-ALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAK--L 175 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCC-EEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEE--C
Confidence 589999984433899999999999876754 3333333210 0000 00111 22445566 67898772 1
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 128 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 128 s~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
+ | +. .-+..++.++...||+|+++
T Consensus 176 ~---~-------------~~-~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 176 T---P-------------NI-TDIREIARAAKEGGADGVSA 199 (299)
T ss_pred C---C-------------Cc-hhHHHHHHHHHHcCCCEEEE
Confidence 1 0 11 11256788889999999874
No 219
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=87.98 E-value=7.8 Score=34.08 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=59.2
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCC-Cccc----hhHHHHHh-cCCCEEEcCCCCCC
Q 027740 58 TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDL-IVDP----RNLEWMRE-ANCPVVADVTHSLQ 130 (219)
Q Consensus 58 ~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~~-~~nl----~~i~~lk~-~~~pV~~ds~Hs~~ 130 (219)
.++|++++-+.. +.++|.++++.+...|. +.+=+++++-. +.... .-|. ..+..+|+ .++||.+--+-..
T Consensus 97 ~~~pvi~si~g~-~~~~~~~~a~~~~~~G~-d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~- 173 (289)
T cd02810 97 PGQPLIASVGGS-SKEDYVELARKIERAGA-KALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF- 173 (289)
T ss_pred CCCeEEEEeccC-CHHHHHHHHHHHHHhCC-CEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC-
Confidence 479999999888 89999999999998876 46666765521 11000 0122 23556676 6888877322110
Q ss_pred CCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 131 QPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
. .+-...++.++...|||+ |..|-+
T Consensus 174 ---------------~-~~~~~~~a~~l~~~Gad~--i~~~~~ 198 (289)
T cd02810 174 ---------------D-LEDIVELAKAAERAGADG--LTAINT 198 (289)
T ss_pred ---------------C-HHHHHHHHHHHHHcCCCE--EEEEcc
Confidence 1 111245677888999994 555533
No 220
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=87.91 E-value=5.4 Score=35.48 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=56.0
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCC--CCCC---C--CccchhHHHHHh-cCCCEEEcCCCC
Q 027740 58 TGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMF--GYND---L--IVDPRNLEWMRE-ANCPVVADVTHS 128 (219)
Q Consensus 58 ~gkPVilstG~~~t~~ei~~A~e~i~~~Gn-~~i~L~~cgs~~--~~~~---~--~~nl~~i~~lk~-~~~pV~~ds~Hs 128 (219)
.+.|++++-... +++||..+++.+.+.+. -+.+-+-+++-. ++.. . +.=...+..+|+ .++||.+--+..
T Consensus 89 ~~~pl~~qi~g~-~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~ 167 (300)
T TIGR01037 89 FPTPLIASVYGS-SVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPN 167 (300)
T ss_pred CCCcEEEEeecC-CHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 467999998666 89999999999987542 455566565421 1111 0 111234556676 688998743211
Q ss_pred CCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 129 LQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
..+ ...++..+...|+|++.+
T Consensus 168 ------------------~~~-~~~~a~~l~~~G~d~i~v 188 (300)
T TIGR01037 168 ------------------VTD-ITEIAKAAEEAGADGLTL 188 (300)
T ss_pred ------------------hhh-HHHHHHHHHHcCCCEEEE
Confidence 111 245677788999995543
No 221
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=87.87 E-value=7.1 Score=38.04 Aligned_cols=132 Identities=13% Similarity=0.120 Sum_probs=74.6
Q ss_pred HHHHHHhcCCCeEeeeCCcccHHHHhhhccc-cccCCCCCCCHHHHHH-------------------HHhc---CC--eE
Q 027740 8 LEKVKIAYDIPIVTDVHETVQCEEVGKVADI-IQIPAFLCRQTDLLVA-------------------AAKT---GK--II 62 (219)
Q Consensus 8 L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~-~kI~S~~~~n~~LL~~-------------------~a~~---gk--PV 62 (219)
+.+.-+++|+++.--|-+..++..+-+..+- ++.... .---.++.. ++.. +. |+
T Consensus 74 ~~~i~~~~Gi~~~kGp~~~~Dlp~~l~~~~~g~~lS~~-~pAd~~~~~~~~~~~~~~~~e~~~~~~~i~~~~i~~~~p~~ 152 (499)
T TIGR00284 74 AKVVEEVTGRPVFKGTVEAVDIPDIIEILRSGIKLSTE-EPADEVVLEIKKLEEYTSKIEEREADFRIGSLKIPLKPPPL 152 (499)
T ss_pred HHHHHHHhCCCEEECCcCHHHHHHHHHhhcccccCCCC-CcHHHHHHHHHHHHHHHHHhhhcchhhhccCcCCCCCCCCe
Confidence 4566788999999999998888876655443 222211 000111111 0010 11 12
Q ss_pred --EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCC
Q 027740 63 --NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDG 139 (219)
Q Consensus 63 --ilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~ 139 (219)
+-.---+..++++..-++...+.|- +++=+-+++.-|.+ ..+ ...+..++. +++||.+|+.+
T Consensus 153 ~v~aEI~~a~~l~~i~~~A~~~~~~GA-DIIDIG~~st~p~~-~~v-~~~V~~l~~~~~~pISIDT~~------------ 217 (499)
T TIGR00284 153 RVVAEIPPTVAEDGIEGLAARMERDGA-DMVALGTGSFDDDP-DVV-KEKVKTALDALDSPVIADTPT------------ 217 (499)
T ss_pred EEEEEEcCCcchHHHHHHHHHHHHCCC-CEEEECCCcCCCcH-HHH-HHHHHHHHhhCCCcEEEeCCC------------
Confidence 2222123346777777777778886 46666666642211 112 245566666 68999999665
Q ss_pred CCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 140 GGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 140 ~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
+..+.+|+.+||+ +|-
T Consensus 218 ------------~~v~eaAL~aGAd--iIN 233 (499)
T TIGR00284 218 ------------LDELYEALKAGAS--GVI 233 (499)
T ss_pred ------------HHHHHHHHHcCCC--EEE
Confidence 4567788888998 554
No 222
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=87.76 E-value=3.7 Score=37.03 Aligned_cols=67 Identities=15% Similarity=0.093 Sum_probs=43.7
Q ss_pred cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCC-CCCC---CCCChHHHHH
Q 027740 117 ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAP-VDGP---TQWPLRNLEE 192 (219)
Q Consensus 117 ~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~-~D~~---~sl~p~el~~ 192 (219)
..+||.+|.+.. |...-+....+.....|+.|+.||-...|.+.- ..+. ..++++|+.+
T Consensus 77 ~~~Pv~~D~d~G-----------------g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~ 139 (285)
T TIGR02320 77 TTKPIILDGDTG-----------------GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCG 139 (285)
T ss_pred cCCCEEEecCCC-----------------CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHH
Confidence 578999998865 223334445566788999999999887777642 2222 3456766665
Q ss_pred HHHHHHHH
Q 027740 193 LLEELVAI 200 (219)
Q Consensus 193 lv~~ir~i 200 (219)
-++.++..
T Consensus 140 kI~Aa~~a 147 (285)
T TIGR02320 140 KIRAGKDA 147 (285)
T ss_pred HHHHHHHh
Confidence 55554444
No 223
>PRK11579 putative oxidoreductase; Provisional
Probab=87.74 E-value=1.7 Score=39.31 Aligned_cols=59 Identities=22% Similarity=0.166 Sum_probs=48.6
Q ss_pred cHHHH-hhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 027740 28 QCEEV-GKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 86 (219)
Q Consensus 28 ~~~~l-~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~G 86 (219)
+.+.+ ++- +|++-|++-.-.+.++..++.+.||+|++.+.++.|++|...-++..++.|
T Consensus 55 ~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g 115 (346)
T PRK11579 55 EPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAG 115 (346)
T ss_pred CHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 34444 433 899999999999999999999999999999999999998888777655443
No 224
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=87.72 E-value=22 Score=32.45 Aligned_cols=129 Identities=21% Similarity=0.244 Sum_probs=67.9
Q ss_pred HHHHHHHhc-CCeEEEeC-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecC-CC-------CCC------C--CCcc---c
Q 027740 50 DLLVAAAKT-GKIINIKK-GQFCASSVMVNSAEKVRLAGNPNVMVCERGT-MF-------GYN------D--LIVD---P 108 (219)
Q Consensus 50 ~LL~~~a~~-gkPVilst-G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs-~~-------~~~------~--~~~n---l 108 (219)
+.|+.+-+. +.||++|- |.+.|.++.. .+.+.|..-|.+--+|. ++ +.. . .+.. .
T Consensus 168 ~~i~~l~~~~~vPVivK~~g~g~s~~~a~----~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~ 243 (326)
T cd02811 168 ERIEELVKALSVPVIVKEVGFGISRETAK----RLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTA 243 (326)
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHH----HHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHH
Confidence 456666664 89999995 6555654444 45556775554422221 11 000 0 0011 1
Q ss_pred hhHHHHHh-c-CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCC
Q 027740 109 RNLEWMRE-A-NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWP 186 (219)
Q Consensus 109 ~~i~~lk~-~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~ 186 (219)
..|...+. . ++||+.+ +|.+. ..-...|+++||+++.+=+-|- +++-++ ..--
T Consensus 244 ~~l~~~~~~~~~ipIias--------------------GGIr~--~~dv~kal~lGAd~V~i~~~~L--~~~~~g-~~~~ 298 (326)
T cd02811 244 ASLLEVRSALPDLPLIAS--------------------GGIRN--GLDIAKALALGADLVGMAGPFL--KAALEG-EEAV 298 (326)
T ss_pred HHHHHHHHHcCCCcEEEE--------------------CCCCC--HHHHHHHHHhCCCEEEEcHHHH--HHHhcC-HHHH
Confidence 23444444 4 7899874 23332 2334577889999877755321 011111 0011
Q ss_pred hHHHHHHHHHHHHHHHHhCCC
Q 027740 187 LRNLEELLEELVAIAKVSKGK 207 (219)
Q Consensus 187 p~el~~lv~~ir~i~~~lg~~ 207 (219)
-+.++.+.++++.+-.+.|.+
T Consensus 299 ~~~i~~~~~el~~~m~~~G~~ 319 (326)
T cd02811 299 IETIEQIIEELRTAMFLTGAK 319 (326)
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 236777788888888777764
No 225
>PRK00208 thiG thiazole synthase; Reviewed
Probab=87.61 E-value=3.9 Score=36.47 Aligned_cols=87 Identities=8% Similarity=-0.042 Sum_probs=67.1
Q ss_pred HHHHHHHHHhc---CCCeE-eeeCCcccHHHHhhh-cccccc-----CCC-CCCCHHHHHHHHh-cCCeEEEeCCCCCCH
Q 027740 5 LKILEKVKIAY---DIPIV-TDVHETVQCEEVGKV-ADIIQI-----PAF-LCRQTDLLVAAAK-TGKIINIKKGQFCAS 72 (219)
Q Consensus 5 l~~L~~~~~~~---Gi~~~-tt~~d~~~~~~l~~~-vd~~kI-----~S~-~~~n~~LL~~~a~-~gkPVilstG~~~t~ 72 (219)
+..+-+.|+++ |+.++ -..-|+..+..++++ ++++-. ||+ -+.|.++++.+.+ .+.|||.--|.+ |+
T Consensus 109 ~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~-tp 187 (250)
T PRK00208 109 PIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIG-TP 187 (250)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCC-CH
Confidence 45666778888 99999 788899999999998 777643 444 3448999999988 588999999999 99
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeecC
Q 027740 73 SVMVNSAEKVRLAGNPNVMVCERGT 97 (219)
Q Consensus 73 ~ei~~A~e~i~~~Gn~~i~L~~cgs 97 (219)
++...|.| .|.. -+++-.+.
T Consensus 188 eda~~Ame----lGAd-gVlV~SAI 207 (250)
T PRK00208 188 SDAAQAME----LGAD-AVLLNTAI 207 (250)
T ss_pred HHHHHHHH----cCCC-EEEEChHh
Confidence 99998877 4664 44444433
No 226
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=87.48 E-value=5.9 Score=35.11 Aligned_cols=127 Identities=10% Similarity=0.014 Sum_probs=78.8
Q ss_pred eeCCcccHHHHhhh-ccccccCC--C--------CCC---CH----HHHHHHHhcCCeEEEeC--CCCCCHHHHHHHHHH
Q 027740 22 DVHETVQCEEVGKV-ADIIQIPA--F--------LCR---QT----DLLVAAAKTGKIINIKK--GQFCASSVMVNSAEK 81 (219)
Q Consensus 22 t~~d~~~~~~l~~~-vd~~kI~S--~--------~~~---n~----~LL~~~a~~gkPVilst--G~~~t~~ei~~A~e~ 81 (219)
-..+.++++...+. ++.+-|-- . ..+ +. +.++++-+.|..|.+.- ....+++++...++.
T Consensus 70 ~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 70 IRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRA 149 (262)
T ss_pred ecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHH
Confidence 34566677777766 66554421 1 111 12 23344445677776653 443467888888888
Q ss_pred HHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH
Q 027740 82 VRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA 160 (219)
Q Consensus 82 i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAva 160 (219)
+.+.|...+.|+...... +|. ++. +-+..+|+ +++|+++ +.|-. .| +-..-+++|+.
T Consensus 150 ~~~~g~~~i~l~Dt~G~~-~P~-~v~-~~~~~~~~~~~~~i~~-H~Hn~---------------~G---la~an~~~a~~ 207 (262)
T cd07948 150 VDKLGVNRVGIADTVGIA-TPR-QVY-ELVRTLRGVVSCDIEF-HGHND---------------TG---CAIANAYAALE 207 (262)
T ss_pred HHHcCCCEEEECCcCCCC-CHH-HHH-HHHHHHHHhcCCeEEE-EECCC---------------CC---hHHHHHHHHHH
Confidence 998998888887765531 232 221 44556677 7899998 77753 13 22455789999
Q ss_pred cCCcEEEEeeec
Q 027740 161 VGVDGVFMEVHD 172 (219)
Q Consensus 161 lGA~GlvIEkH~ 172 (219)
.||+ +++.-+
T Consensus 208 aG~~--~vd~s~ 217 (262)
T cd07948 208 AGAT--HIDTTV 217 (262)
T ss_pred hCCC--EEEEec
Confidence 9998 777653
No 227
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=87.46 E-value=13 Score=33.60 Aligned_cols=109 Identities=22% Similarity=0.268 Sum_probs=64.1
Q ss_pred ccccccCCCCCCCHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL----~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|++.+ +++-+.+.||||..... +. +++ | +++ .=...+
T Consensus 15 ~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~-~~-------~~~---~-------------~~~---~~~~~~ 67 (293)
T PRK07315 15 DNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMG-AA-------KYM---G-------------GYK---VCKNLI 67 (293)
T ss_pred HCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc-HH-------hhc---C-------------cHH---HHHHHH
Confidence 44567888899887655 44455688888887665 21 100 0 000 001223
Q ss_pred HHHHh-c--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChH
Q 027740 112 EWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLR 188 (219)
Q Consensus 112 ~~lk~-~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~ 188 (219)
..+.+ + .+||.+-=||.. ....+.|+..|.+-+|+- .+ +++.+
T Consensus 68 ~~~a~~~~~~vPV~lHLDH~~----------------------~~~i~~ai~~GftSVm~d-----------~S-~l~~e 113 (293)
T PRK07315 68 ENLVESMGITVPVAIHLDHGH----------------------YEDALECIEVGYTSIMFD-----------GS-HLPVE 113 (293)
T ss_pred HHHHHHcCCCCcEEEECCCCC----------------------HHHHHHHHHcCCCEEEEc-----------CC-CCCHH
Confidence 33333 5 679888777751 456678888899866653 22 25566
Q ss_pred HHHHHHHHHHHHHHHhC
Q 027740 189 NLEELLEELVAIAKVSK 205 (219)
Q Consensus 189 el~~lv~~ir~i~~~lg 205 (219)
|.-++.++++++....|
T Consensus 114 Eni~~t~~v~~~a~~~g 130 (293)
T PRK07315 114 ENLKLAKEVVEKAHAKG 130 (293)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 66666666666655544
No 228
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=87.44 E-value=6.2 Score=38.12 Aligned_cols=119 Identities=20% Similarity=0.145 Sum_probs=69.2
Q ss_pred cccHHHHhhh-ccccccCCCCCCC---HHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-----e
Q 027740 26 TVQCEEVGKV-ADIIQIPAFLCRQ---TDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-----E 94 (219)
Q Consensus 26 ~~~~~~l~~~-vd~~kI~S~~~~n---~~LL~~~a~~--gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~-----~ 94 (219)
.+-+..|.+. ++.+-|-+.+-.+ .++++++-+. +.||+. |-.+|.++...+++ .|..-|-+. -
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~--g~~~t~~~~~~l~~----~G~d~i~vg~g~Gs~ 300 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVA--GNVVSAEGVRDLLE----AGANIIKVGVGPGAM 300 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEE--eccCCHHHHHHHHH----hCCCEEEECCcCCcc
Confidence 3444455554 7888777766554 3556666665 789999 54457888877654 465422111 1
Q ss_pred ecCCC----CCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEee
Q 027740 95 RGTMF----GYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 95 cgs~~----~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEk 170 (219)
|++++ +.|.....+.....++++++||+.|. |.+. +.-..-|.++||+.+|+=.
T Consensus 301 ~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadG--------------------gi~~--~~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 301 CTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADG--------------------GVRH--PRDVALALAAGASNVMVGS 358 (475)
T ss_pred ccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeC--------------------CCCC--HHHHHHHHHcCCCEEeech
Confidence 33332 33433344445445555789998752 2221 2224478899999888765
Q ss_pred ec
Q 027740 171 HD 172 (219)
Q Consensus 171 H~ 172 (219)
-|
T Consensus 359 ~~ 360 (475)
T TIGR01303 359 WF 360 (475)
T ss_pred hh
Confidence 54
No 229
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=87.26 E-value=20 Score=33.98 Aligned_cols=160 Identities=24% Similarity=0.227 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHhcCCCeEee-----eCCcccHHHHhhhccc--cccCCCCCC-CHHHHHHHHh-cCCeEEEeCCCCCCHH
Q 027740 3 EGLKILEKVKIAYDIPIVTD-----VHETVQCEEVGKVADI--IQIPAFLCR-QTDLLVAAAK-TGKIINIKKGQFCASS 73 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt-----~~d~~~~~~l~~~vd~--~kI~S~~~~-n~~LL~~~a~-~gkPVilstG~~~t~~ 73 (219)
+-.+..+++++..++|++-. -.|++-++...+.+.- --|.|-+.. |+.=+-++++ .|.||++++... ++
T Consensus 175 e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~Ny~~ia~lAk~yg~~Vvv~s~~D--in 252 (389)
T TIGR00381 175 EAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDLDYEKIANAAKKYGHVVLSWTIMD--IN 252 (389)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchhhHHHHHHHHHHhCCeEEEEcCCc--HH
Confidence 34566778888899999887 5588777777776433 556777777 8754544444 689999998644 88
Q ss_pred HHHHHHHHHHHcCCC--cEEEEeecCCC-CCCCCCccchhHHHHH-----h---cCCCEEEcCCCCCCCCCCCccCCCCc
Q 027740 74 VMVNSAEKVRLAGNP--NVMVCERGTMF-GYNDLIVDPRNLEWMR-----E---ANCPVVADVTHSLQQPAGKKLDGGGV 142 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~--~i~L~~cgs~~-~~~~~~~nl~~i~~lk-----~---~~~pV~~ds~Hs~~~~~~~~~~~~~~ 142 (219)
.......++...|.+ +| ++..++.. +|..+ --+..+..+| . +++|++.+.+.++.-..+. .. .
T Consensus 253 ~ak~Ln~kL~~~Gv~~eDI-VlDP~t~alG~Gie-ya~s~~erIRraALkgD~~L~~Pii~~~~~~w~~kEa~---~~-~ 326 (389)
T TIGR00381 253 MQKTLNRYLLKRGLMPRDI-VMDPTTCALGYGIE-FSITNMERIRLSGLKGDTDLNMPMSSGTTNAWGAREAW---MV-D 326 (389)
T ss_pred HHHHHHHHHHHcCCCHHHE-EEcCCCccccCCHH-HHHHHHHHHHHHHhcCCcCCCCCeeccchhhhhheeec---cC-C
Confidence 888888889888988 76 56666631 33321 1122333332 2 5789876543332100000 00 0
Q ss_pred cCCCCcc-----cHHHHHHHHHHcCCcEEEEeee
Q 027740 143 ASGGLRE-----LIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 143 ~~~G~~~-----~~~~~~~aAvalGA~GlvIEkH 171 (219)
..-|.++ +-...+.+....|+| +++=.|
T Consensus 327 ~~wG~~~~Rg~lwE~~ta~~~~~aG~d-i~~m~H 359 (389)
T TIGR00381 327 SEWGPREYRGPLWEIITGLTMMLAGVD-LFMMLH 359 (389)
T ss_pred CCCCChHHhchhhhHHHHHHHHHcCCc-EEEEeC
Confidence 0112222 222334555778999 788888
No 230
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=86.75 E-value=2 Score=40.29 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=47.4
Q ss_pred HHHHHH-HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cC-CCEEEcC
Q 027740 49 TDLLVA-AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN-CPVVADV 125 (219)
Q Consensus 49 ~~LL~~-~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~-~pV~~ds 125 (219)
+.+++. ..+.|.-+-+-.. . ++++++.+++ .|..++++|.-++. .-...|+.+|..+.+ .+ ++|++|.
T Consensus 108 ~~~~~~~l~~~gv~v~~~d~-~-d~~~l~~~l~-----~~t~~v~~EspsNP--~l~v~Dl~~i~~~a~~~g~~~~vVDn 178 (386)
T PF01053_consen 108 YRLLEELLPRFGVEVTFVDP-T-DLEALEAALR-----PNTKLVFLESPSNP--TLEVPDLEAIAKLAKEHGDILVVVDN 178 (386)
T ss_dssp HHHHHHCHHHTTSEEEEEST-T-SHHHHHHHHC-----TTEEEEEEESSBTT--TTB---HHHHHHHHHHTTT-EEEEEC
T ss_pred hhhhhhhhcccCcEEEEeCc-h-hHHHHHhhcc-----ccceEEEEEcCCCc--ccccccHHHHHHHHHHhCCceEEeec
Confidence 455554 5556777655544 2 5788877654 37789999987762 235679999998877 88 9999998
Q ss_pred CCC
Q 027740 126 THS 128 (219)
Q Consensus 126 ~Hs 128 (219)
+-+
T Consensus 179 T~a 181 (386)
T PF01053_consen 179 TFA 181 (386)
T ss_dssp TTT
T ss_pred ccc
Confidence 876
No 231
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=86.57 E-value=2.3 Score=39.35 Aligned_cols=75 Identities=9% Similarity=0.069 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHH-hhh-ccccccCCC--CCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEV-GKV-ADIIQIPAF--LCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l-~~~-vd~~kI~S~--~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e 80 (219)
.+..++.++++|+++.+ +++.+ .+. ++++-|++. .-...++..++.+.||.|+..+.++ .+|.++-++
T Consensus 38 ~erA~~~A~~~gi~~y~------~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla--~~Ea~el~~ 109 (343)
T TIGR01761 38 SERSRALAHRLGVPLYC------EVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLH--PRDIQDLLR 109 (343)
T ss_pred HHHHHHHHHHhCCCccC------CHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCC--HHHHHHHHH
Confidence 45677889999987432 33333 445 777888764 4467899999999999999999997 788888888
Q ss_pred HHHHcCC
Q 027740 81 KVRLAGN 87 (219)
Q Consensus 81 ~i~~~Gn 87 (219)
..+++|.
T Consensus 110 ~A~~~g~ 116 (343)
T TIGR01761 110 LAERQGR 116 (343)
T ss_pred HHHHcCC
Confidence 8877654
No 232
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=86.57 E-value=5.5 Score=37.83 Aligned_cols=111 Identities=15% Similarity=0.138 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccc----cccCCCCC--CCHHHHHHHHhcC--CeEEEeCCCCCCHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADI----IQIPAFLC--RQTDLLVAAAKTG--KIINIKKGQFCASSVM 75 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~----~kI~S~~~--~n~~LL~~~a~~g--kPVilstG~~~t~~ei 75 (219)
=+.++.+.++++.|..+-+||++.+-+-..++.+. .||-..++ +|...|+.--..| --|++|-.+-+|+.|.
T Consensus 265 ~i~~~~~Lv~~YpivsiEDpl~E~Dweg~~~lt~~~g~kvqivGDDLfvTN~~~l~~gi~~g~aNaiLIK~NQIGTLTEt 344 (423)
T COG0148 265 LIEYYLELVKKYPIVSIEDPLSEDDWEGFAELTKRLGDKVQIVGDDLFVTNPKRLKKGIEKGAANAILIKPNQIGTLTET 344 (423)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCchhHHHHHHHHHhhCCeEEEECCcceecCHHHHHHHHHhccCceEEEechhcccHHHH
Confidence 37889999999999999999999998887776333 46766665 4999999888876 4899999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEE
Q 027740 76 VNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVV 122 (219)
Q Consensus 76 ~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~ 122 (219)
.+|++..+..|-. .++-||... +. | ..|..|.- ++++-+
T Consensus 345 ~~ai~~A~~~gy~-~viSHRSGE--Te----D-~tIAdLAVa~~agqI 384 (423)
T COG0148 345 LEAINLAKDAGYT-AVISHRSGE--TE----D-TTIADLAVATNAGQI 384 (423)
T ss_pred HHHHHHHHHCCCe-EEEecCCCC--cc----c-chHHHHHHHhCCCee
Confidence 9999999988874 678888543 22 2 34444444 565543
No 233
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=86.56 E-value=3.5 Score=39.26 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=59.1
Q ss_pred HHHHHHHHHhc-CCCeEe-eeCCcccHHHHhhh-ccccccC--CC--CCC---------CHHHHHHH----HhcCCeEEE
Q 027740 5 LKILEKVKIAY-DIPIVT-DVHETVQCEEVGKV-ADIIQIP--AF--LCR---------QTDLLVAA----AKTGKIINI 64 (219)
Q Consensus 5 l~~L~~~~~~~-Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~--S~--~~~---------n~~LL~~~----a~~gkPVil 64 (219)
+..+++..+++ +++++. ++.+.+++..+.+. +|++++| ++ ..+ +...+.++ .+.+.|||-
T Consensus 253 ~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpvia 332 (450)
T TIGR01302 253 IDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIA 332 (450)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEE
Confidence 45667777774 799888 99999999999999 9999966 32 111 22333333 346899999
Q ss_pred eCCCCCCHHHHHHHHHHHHHcCCCcE
Q 027740 65 KKGQFCASSVMVNSAEKVRLAGNPNV 90 (219)
Q Consensus 65 stG~~~t~~ei~~A~e~i~~~Gn~~i 90 (219)
.-|.. +..|+..|+. .|..-+
T Consensus 333 dGGi~-~~~di~kAla----~GA~~V 353 (450)
T TIGR01302 333 DGGIR-YSGDIVKALA----AGADAV 353 (450)
T ss_pred eCCCC-CHHHHHHHHH----cCCCEE
Confidence 99999 9999998865 465433
No 234
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=86.30 E-value=3.8 Score=41.49 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCH--------HHHHHHHhcCCeEEEeCCCCCCHH
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQT--------DLLVAAAKTGKIINIKKGQFCASS 73 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~--------~LL~~~a~~gkPVilstG~~~t~~ 73 (219)
+-|+.|.++|+++|+.++.|+|+.++++...+. .+++-|-.||+..+ .|+..+- .+..+|-..|.. |.+
T Consensus 147 ~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip-~~~~~VsESGI~-~~~ 224 (695)
T PRK13802 147 AQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLP-DDVIKVAESGVF-GAV 224 (695)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCC-CCcEEEEcCCCC-CHH
Confidence 468999999999999999999999999998888 99999999988732 2233332 355667779999 999
Q ss_pred HHHHHHH
Q 027740 74 VMVNSAE 80 (219)
Q Consensus 74 ei~~A~e 80 (219)
|+....+
T Consensus 225 d~~~l~~ 231 (695)
T PRK13802 225 EVEDYAR 231 (695)
T ss_pred HHHHHHH
Confidence 9987655
No 235
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=86.28 E-value=3.1 Score=40.28 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=56.1
Q ss_pred HHHHHHHHHhc-CCCeEe-eeCCcccHHHHhhh-ccccccC--CCC-CC----------CH----HHHHHHHhcCCeEEE
Q 027740 5 LKILEKVKIAY-DIPIVT-DVHETVQCEEVGKV-ADIIQIP--AFL-CR----------QT----DLLVAAAKTGKIINI 64 (219)
Q Consensus 5 l~~L~~~~~~~-Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~--S~~-~~----------n~----~LL~~~a~~gkPVil 64 (219)
++.+++.++++ ++++++ ++.+.+++..+.+. +|++++| ++- ++ +. .+.+.+.+.+.|||-
T Consensus 270 ~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIa 349 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCIA 349 (495)
T ss_pred HHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEe
Confidence 45677777776 789988 99999999999999 9999974 321 11 11 223344456899999
Q ss_pred eCCCCCCHHHHHHHHH
Q 027740 65 KKGQFCASSVMVNSAE 80 (219)
Q Consensus 65 stG~~~t~~ei~~A~e 80 (219)
.=|.. +..|+..|+.
T Consensus 350 dGGi~-~~~di~kAla 364 (495)
T PTZ00314 350 DGGIK-NSGDICKALA 364 (495)
T ss_pred cCCCC-CHHHHHHHHH
Confidence 99999 9999998865
No 236
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=85.93 E-value=14 Score=33.13 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=68.6
Q ss_pred HHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHHHHHc--CCCcEEEEeec-----------C-------CC-CCC---CCC
Q 027740 51 LLVAAAK-TGKIINIKKGQFCASSVMVNSAEKVRLA--GNPNVMVCERG-----------T-------MF-GYN---DLI 105 (219)
Q Consensus 51 LL~~~a~-~gkPVilstG~~~t~~ei~~A~e~i~~~--Gn~~i~L~~cg-----------s-------~~-~~~---~~~ 105 (219)
+++++-+ +.+||++|-....+.+++.++++.+.+. |-.-+++..+. . .| ++. -..
T Consensus 148 i~~~v~~~~~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~ 227 (294)
T cd04741 148 YLTAVKAAYSIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHP 227 (294)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHH
Confidence 3444433 4799999999987888898888888777 66556653222 1 01 110 011
Q ss_pred ccchhHHHHHh-c--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCC
Q 027740 106 VDPRNLEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGP 182 (219)
Q Consensus 106 ~nl~~i~~lk~-~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~ 182 (219)
..++.+..+++ . ++||+.... ...+ .-+...+.+||++++|=+= .
T Consensus 228 ~al~~v~~~~~~~~~~ipIig~GG----------------I~s~------~da~e~l~aGA~~Vqv~ta----------~ 275 (294)
T cd04741 228 LALGNVRTFRRLLPSEIQIIGVGG----------------VLDG------RGAFRMRLAGASAVQVGTA----------L 275 (294)
T ss_pred HHHHHHHHHHHhcCCCCCEEEeCC----------------CCCH------HHHHHHHHcCCCceeEchh----------h
Confidence 33555666666 5 489876322 1112 2344555689996665322 1
Q ss_pred CCCChHHHHHHHHHHHHH
Q 027740 183 TQWPLRNLEELLEELVAI 200 (219)
Q Consensus 183 ~sl~p~el~~lv~~ir~i 200 (219)
..-.|.-++++.+.+++.
T Consensus 276 ~~~gp~~~~~i~~~L~~~ 293 (294)
T cd04741 276 GKEGPKVFARIEKELEDI 293 (294)
T ss_pred hhcCchHHHHHHHHHHhh
Confidence 112577788887776653
No 237
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=85.83 E-value=7.4 Score=34.84 Aligned_cols=99 Identities=12% Similarity=0.012 Sum_probs=68.2
Q ss_pred HHHHHHhcCCeEEEeCCCC-----CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c-CCCEEE
Q 027740 51 LLVAAAKTGKIINIKKGQF-----CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NCPVVA 123 (219)
Q Consensus 51 LL~~~a~~gkPVilstG~~-----~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~-~~pV~~ 123 (219)
.++++.+.|..|.+.--.+ .+++.+...++.+...|...|.|+...... +|. ++ .+-+..+++ + ++|+++
T Consensus 120 ~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~-~P~-~v-~~l~~~l~~~~~~~~i~~ 196 (280)
T cd07945 120 VIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGIL-SPF-ET-YTYISDMVKRYPNLHFDF 196 (280)
T ss_pred HHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEecCCCCCC-CHH-HH-HHHHHHHHhhCCCCeEEE
Confidence 3666667788777665532 278999999999999999988888875531 232 22 244556666 5 588988
Q ss_pred cCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 124 ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
+.|-. .| +-..-+++|+..||+ .|+.-+.
T Consensus 197 -H~Hnd---------------~G---la~AN~laA~~aGa~--~vd~s~~ 225 (280)
T cd07945 197 -HAHND---------------YD---LAVANVLAAVKAGIK--GLHTTVN 225 (280)
T ss_pred -EeCCC---------------CC---HHHHHHHHHHHhCCC--EEEEecc
Confidence 77763 13 224557899999999 8887655
No 238
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=85.77 E-value=9.5 Score=35.53 Aligned_cols=141 Identities=17% Similarity=0.098 Sum_probs=85.7
Q ss_pred HHHhhh-ccccccCCCCCCCH--HHHHHHHhcCCeEEE-eCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC----CC
Q 027740 30 EEVGKV-ADIIQIPAFLCRQT--DLLVAAAKTGKIINI-KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF----GY 101 (219)
Q Consensus 30 ~~l~~~-vd~~kI~S~~~~n~--~LL~~~a~~gkPVil-stG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~----~~ 101 (219)
+.|.++ ++.+-+|...+... +.++.+.+.+...-+ --+.. ..++++.|++ .|.+.+.++-..|.+ ..
T Consensus 33 ~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~-~~~di~~a~~----~g~~~i~i~~~~Sd~h~~~~~ 107 (378)
T PRK11858 33 RMLDEIGVDQIEAGFPAVSEDEKEAIKAIAKLGLNASILALNRA-VKSDIDASID----CGVDAVHIFIATSDIHIKHKL 107 (378)
T ss_pred HHHHHhCCCEEEEeCCCcChHHHHHHHHHHhcCCCeEEEEEccc-CHHHHHHHHh----CCcCEEEEEEcCCHHHHHHHh
Confidence 344555 77777776666654 477888776654333 22333 5777777654 577777777766531 11
Q ss_pred CC-CCccch----hHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCC
Q 027740 102 ND-LIVDPR----NLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLN 176 (219)
Q Consensus 102 ~~-~~~nl~----~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~ 176 (219)
.. .+-.++ .+...|+.++.|.+++-.+. --..+++..++.++..+||+.+.
T Consensus 108 ~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~---------------r~~~~~l~~~~~~~~~~Ga~~I~--------- 163 (378)
T PRK11858 108 KKTREEVLERMVEAVEYAKDHGLYVSFSAEDAS---------------RTDLDFLIEFAKAAEEAGADRVR--------- 163 (378)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC---------------CCCHHHHHHHHHHHHhCCCCEEE---------
Confidence 10 001122 23333445777776433221 01245677788889999998422
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHH
Q 027740 177 APVDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 177 a~~D~~~sl~p~el~~lv~~ir~i 200 (219)
++|---.++|+++.++++.+++.
T Consensus 164 -l~DT~G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 164 -FCDTVGILDPFTMYELVKELVEA 186 (378)
T ss_pred -EeccCCCCCHHHHHHHHHHHHHh
Confidence 46888899999999999998854
No 239
>PLN02535 glycolate oxidase
Probab=85.77 E-value=31 Score=32.33 Aligned_cols=31 Identities=19% Similarity=0.147 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH
Q 027740 49 TDLLVAAAKTGKIINIKKGQFCASSVMVNSA 79 (219)
Q Consensus 49 ~~LL~~~a~~gkPVilstG~~~t~~ei~~A~ 79 (219)
..+-+++++.|.|.++||..+.+++|+..+.
T Consensus 92 ~a~AraA~~~g~~~~lSt~s~~slEeva~~~ 122 (364)
T PLN02535 92 IATARAAAACNTIMVLSFMASCTVEEVASSC 122 (364)
T ss_pred HHHHHHHHHcCCCeEecCcccCCHHHHHhcC
Confidence 5778899999999999999999999997653
No 240
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=85.76 E-value=5 Score=38.60 Aligned_cols=121 Identities=18% Similarity=0.142 Sum_probs=69.1
Q ss_pred eCCcccHHHHhhh-ccccccCCCCC---CCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE----
Q 027740 23 VHETVQCEEVGKV-ADIIQIPAFLC---RQTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV---- 92 (219)
Q Consensus 23 ~~d~~~~~~l~~~-vd~~kI~S~~~---~n~~LL~~~a~~--gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L---- 92 (219)
+.+.+.++.+.+. ++++-+-+.+- ...++++.+.+. +.||++.++ .|.++...+++ .|..-|.+
T Consensus 227 ~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v--~t~e~a~~l~~----aGad~i~vg~g~ 300 (486)
T PRK05567 227 ADNEERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNV--ATAEAARALIE----AGADAVKVGIGP 300 (486)
T ss_pred cchHHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEecc--CCHHHHHHHHH----cCCCEEEECCCC
Confidence 3345566666666 77776644322 234566666654 679999655 46888877664 46654443
Q ss_pred -EeecCCC--CCCCCCccchhHHHHHh----cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcE
Q 027740 93 -CERGTMF--GYNDLIVDPRNLEWMRE----ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDG 165 (219)
Q Consensus 93 -~~cgs~~--~~~~~~~nl~~i~~lk~----~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~G 165 (219)
-.|++.. +.. .-++.++...++ +++||+.|. |.+. +.-..-|.++||+.
T Consensus 301 gs~~~~r~~~~~g--~p~~~~~~~~~~~~~~~~~~viadG--------------------Gi~~--~~di~kAla~GA~~ 356 (486)
T PRK05567 301 GSICTTRIVAGVG--VPQITAIADAAEAAKKYGIPVIADG--------------------GIRY--SGDIAKALAAGASA 356 (486)
T ss_pred CccccceeecCCC--cCHHHHHHHHHHHhccCCCeEEEcC--------------------CCCC--HHHHHHHHHhCCCE
Confidence 1233321 111 113455554433 578998752 2221 23345789999999
Q ss_pred EEEeeecC
Q 027740 166 VFMEVHDD 173 (219)
Q Consensus 166 lvIEkH~t 173 (219)
+|+=.-|+
T Consensus 357 v~~G~~~a 364 (486)
T PRK05567 357 VMLGSMLA 364 (486)
T ss_pred EEECcccc
Confidence 98876554
No 241
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=85.35 E-value=25 Score=30.87 Aligned_cols=140 Identities=21% Similarity=0.241 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCC-CCCCHHHH-----HHHHh---cCC---e---EEE-----
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAF-LCRQTDLL-----VAAAK---TGK---I---INI----- 64 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~-~~~n~~LL-----~~~a~---~gk---P---Vil----- 64 (219)
+..+.+..+++.+|++-+|-+..++-. ..|.+-++|= +.+|...+ +.+.. .+. | +++
T Consensus 49 ~~~~v~~ik~~~lPvilfp~~~~~i~~---~aDa~l~~svlNs~~~~~iig~~~~~~~~~~~~~le~ip~gYiv~~~~~~ 125 (232)
T PRK04169 49 VDELVKAIKEYDLPVILFPGNIEGISP---GADAYLFPSVLNSRNPYWIIGAHVEAAPIIKKGGLEVIPEGYIVLNPGSK 125 (232)
T ss_pred HHHHHHHHhcCCCCEEEeCCCccccCc---CCCEEEEEEEecCCCcchHhhHHHHHHHHHhhcCcEECceEEEEECCCCe
Confidence 444444445599999999888877654 3566655552 22232221 22221 222 2 111
Q ss_pred ----eCCCCC--CHHHHHHHHHHHHH-cCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCC-CEEEcCCCCCCCCCCC
Q 027740 65 ----KKGQFC--ASSVMVNSAEKVRL-AGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANC-PVVADVTHSLQQPAGK 135 (219)
Q Consensus 65 ----stG~~~--t~~ei~~A~e~i~~-~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~-pV~~ds~Hs~~~~~~~ 135 (219)
++..-. +.+|+..++..-.. .|- .++.++-|+.++.+ .|...+..+++ .+. ||.+-
T Consensus 126 va~~~~~~~~~~~~~~~~~~~~lA~~~~g~-~~vYle~gs~~g~~---~~~e~I~~v~~~~~~~pvivG----------- 190 (232)
T PRK04169 126 VAVVGTAAPIPLDKPDIAAYAALAAEYLGM-PIVYLEYGGGAGDP---VPPEMVKAVKKALDITPLIYG----------- 190 (232)
T ss_pred eeeeeccccCCCChHHHHHHHHHHHHHcCC-CeEEEECCCCCCCC---CCHHHHHHHHHhcCCCcEEEE-----------
Confidence 233222 34454444332222 243 58888888765443 57788888888 777 98771
Q ss_pred ccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 136 KLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 136 ~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
+|.|. ...+..+...||||+++=.-+.
T Consensus 191 ---------GGIrs--~e~a~~~l~~GAD~VVVGSai~ 217 (232)
T PRK04169 191 ---------GGIRS--PEQARELMAAGADTIVVGNIIE 217 (232)
T ss_pred ---------CCCCC--HHHHHHHHHhCCCEEEEChHHh
Confidence 24333 4456677899999999876654
No 242
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=85.31 E-value=2.6 Score=38.25 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=26.5
Q ss_pred ccccccCCCCCCCHHH----HHHHHhcCCeEEEeCCCC
Q 027740 36 ADIIQIPAFLCRQTDL----LVAAAKTGKIINIKKGQF 69 (219)
Q Consensus 36 vd~~kI~S~~~~n~~L----L~~~a~~gkPVilstG~~ 69 (219)
-.-|-||+++++|.+. |+++.+.+-||||.+..+
T Consensus 15 e~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g 52 (286)
T COG0191 15 ENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEG 52 (286)
T ss_pred HcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEeccc
Confidence 3458899999999754 566777899999987665
No 243
>PRK12999 pyruvate carboxylase; Reviewed
Probab=85.31 E-value=45 Score=35.85 Aligned_cols=112 Identities=16% Similarity=0.150 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCc
Q 027740 70 CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLR 148 (219)
Q Consensus 70 ~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~ 148 (219)
.+++-+..-++.+.+.|...|.|+.-.... .| ..+ ..-+..+|+ +++||.+ ++|.. .|.
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l-~P-~~~-~~lv~~lk~~~~ipi~~-H~Hnt---------------~Gl- 747 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILAIKDMAGLL-KP-AAA-YELVSALKEEVDLPIHL-HTHDT---------------SGN- 747 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCccCCC-CH-HHH-HHHHHHHHHHcCCeEEE-EeCCC---------------Cch-
Confidence 388888888888889999877777765432 12 112 245667787 8999999 88874 242
Q ss_pred ccHHHHHHHHHHcCCcEEEEeeecCCCCC-------------C--CCCCCCCChHHHHHHHHHHHHHHHHhC
Q 027740 149 ELIPCIARTAIAVGVDGVFMEVHDDPLNA-------------P--VDGPTQWPLRNLEELLEELVAIAKVSK 205 (219)
Q Consensus 149 ~~~~~~~~aAvalGA~GlvIEkH~t~d~a-------------~--~D~~~sl~p~el~~lv~~ir~i~~~lg 205 (219)
-...+++|+.+||+ +|+.-...=-. + .+....++++.+.++-+.+++++....
T Consensus 748 --a~an~laA~~aGad--~vD~av~glg~~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~~y~ 815 (1146)
T PRK12999 748 --GLATYLAAAEAGVD--IVDVAVASMSGLTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRPYYA 815 (1146)
T ss_pred --HHHHHHHHHHhCCC--EEEecchhhcCCcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHhHhh
Confidence 24557899999999 88875543211 1 144456778777777666666655543
No 244
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=85.26 E-value=9.7 Score=35.89 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=69.8
Q ss_pred HHHH-HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c--CCCEEEcCCC
Q 027740 52 LVAA-AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTH 127 (219)
Q Consensus 52 L~~~-a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~--~~pV~~ds~H 127 (219)
|+.+ ..++.||++|.= . +.++...+++ .|..-|++-.+|... .+....-+..++.+++ . ++||++|.
T Consensus 237 i~~lr~~~~~pvivKgV-~-s~~dA~~a~~----~Gvd~I~Vs~hGGr~-~d~~~~t~~~L~~i~~a~~~~~~vi~dG-- 307 (381)
T PRK11197 237 LEWIRDFWDGPMVIKGI-L-DPEDARDAVR----FGADGIVVSNHGGRQ-LDGVLSSARALPAIADAVKGDITILADS-- 307 (381)
T ss_pred HHHHHHhCCCCEEEEec-C-CHHHHHHHHh----CCCCEEEECCCCCCC-CCCcccHHHHHHHHHHHhcCCCeEEeeC--
Confidence 4544 447889999865 3 6888877655 587777665555431 1111112345555544 3 58998863
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC
Q 027740 128 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKGK 207 (219)
Q Consensus 128 s~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~~ 207 (219)
|.|. ..-...|.++||++++|=.=|----+ ..+ +.---.-++.|.++++..-.++|..
T Consensus 308 ------------------GIr~--g~Di~KALaLGA~~V~iGr~~l~~la-~~G-~~gv~~~l~~l~~El~~~m~l~G~~ 365 (381)
T PRK11197 308 ------------------GIRN--GLDVVRMIALGADTVLLGRAFVYALA-AAG-QAGVANLLDLIEKEMRVAMTLTGAK 365 (381)
T ss_pred ------------------CcCc--HHHHHHHHHcCcCceeEhHHHHHHHH-hcc-HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 2221 12234789999998887543221100 011 0011235666667777777777764
Q ss_pred c
Q 027740 208 Q 208 (219)
Q Consensus 208 ~ 208 (219)
.
T Consensus 366 ~ 366 (381)
T PRK11197 366 S 366 (381)
T ss_pred C
Confidence 3
No 245
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=85.20 E-value=8.5 Score=33.67 Aligned_cols=83 Identities=13% Similarity=0.204 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCCeEeeeC---------CcccH----HHHhhh-ccccccCCCCCCCHHHHHHHHh-cCCeEEEeCCC
Q 027740 4 GLKILEKVKIAYDIPIVTDVH---------ETVQC----EEVGKV-ADIIQIPAFLCRQTDLLVAAAK-TGKIINIKKGQ 68 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~---------d~~~~----~~l~~~-vd~~kI~S~~~~n~~LL~~~a~-~gkPVilstG~ 68 (219)
-+..+.+.|+++|++++.-.+ +.+.+ ....+. +|++|++.. ...+.++.+.+ .+.||...=|.
T Consensus 124 ~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~--~~~~~l~~~~~~~~iPVva~GGi 201 (258)
T TIGR01949 124 DLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT--GDIDSFRDVVKGCPAPVVVAGGP 201 (258)
T ss_pred HHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC--CCHHHHHHHHHhCCCcEEEecCC
Confidence 367788899999999988433 11222 223345 899999743 36788888876 68999887665
Q ss_pred CC-CHHHHHHHHHHHHHcCCC
Q 027740 69 FC-ASSVMVNSAEKVRLAGNP 88 (219)
Q Consensus 69 ~~-t~~ei~~A~e~i~~~Gn~ 88 (219)
.. |.++...-++.+...|..
T Consensus 202 ~~~~~~~~~~~i~~~~~aGa~ 222 (258)
T TIGR01949 202 KTNSDREFLQMIKDAMEAGAA 222 (258)
T ss_pred CCCCHHHHHHHHHHHHHcCCc
Confidence 42 577777777777778876
No 246
>PRK06852 aldolase; Validated
Probab=85.09 E-value=7.6 Score=35.52 Aligned_cols=87 Identities=7% Similarity=-0.065 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCCCeEeee----------CCcccHHH----Hhhh-ccccccCCCCC---CC-HHHHHHHHhc-CCeEE
Q 027740 4 GLKILEKVKIAYDIPIVTDV----------HETVQCEE----VGKV-ADIIQIPAFLC---RQ-TDLLVAAAKT-GKIIN 63 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~----------~d~~~~~~----l~~~-vd~~kI~S~~~---~n-~~LL~~~a~~-gkPVi 63 (219)
-|..+.+.|+++|||++..+ .+++-+-+ .+++ .|++|+.--.- .+ ..|-+.++.. ..||+
T Consensus 155 ~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVv 234 (304)
T PRK06852 155 EAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVV 234 (304)
T ss_pred HHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEE
Confidence 36677889999999999622 22222222 3456 89999986411 12 2344455556 68999
Q ss_pred EeCCCCCCHHHHHHHHHHHHH-cCCCcE
Q 027740 64 IKKGQFCASSVMVNSAEKVRL-AGNPNV 90 (219)
Q Consensus 64 lstG~~~t~~ei~~A~e~i~~-~Gn~~i 90 (219)
++=|...+.+|+++-++-... .|..-+
T Consensus 235 iaGG~k~~~~e~L~~v~~ai~~aGa~Gv 262 (304)
T PRK06852 235 CAGGSSTDPEEFLKQLYEQIHISGASGN 262 (304)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHcCCcee
Confidence 999999777888887775555 565433
No 247
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=85.07 E-value=30 Score=31.51 Aligned_cols=138 Identities=19% Similarity=0.192 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCC-HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQ-TDLLVAAAKTGKIINIKKGQFCASSVMVNSA 79 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n-~~LL~~~a~~gkPVilstG~~~t~~ei~~A~ 79 (219)
+.+.+++..+...||++. -.-....++.|.++ +|++- .|.-.+- .++.... +..--+.+=.|.+ |++|.+.++
T Consensus 55 ~p~~I~~I~~~V~iPVig~~kigh~~Ea~~L~~~GvDiID-eTe~lrPade~~~~~-K~~f~vpfmad~~-~l~EAlrai 131 (287)
T TIGR00343 55 DPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDYID-ESEVLTPADWTFHID-KKKFKVPFVCGAR-DLGEALRRI 131 (287)
T ss_pred CHHHHHHHHHhCCCCEEEEeeccHHHHHHHHHHcCCCEEE-ccCCCCcHHHHHHHH-HHHcCCCEEccCC-CHHHHHHHH
Confidence 456777888888899887 33446777788888 88884 4333443 2333333 3322344556777 888877765
Q ss_pred HHHHHcCCCcEEEEeecCCCCC----------------------------------CCCCccchhHHHHHh-cCCCEE-E
Q 027740 80 EKVRLAGNPNVMVCERGTMFGY----------------------------------NDLIVDPRNLEWMRE-ANCPVV-A 123 (219)
Q Consensus 80 e~i~~~Gn~~i~L~~cgs~~~~----------------------------------~~~~~nl~~i~~lk~-~~~pV~-~ 123 (219)
+ .|-. + =+++-++| .....++.-|..+++ .++||+ |
T Consensus 132 ~----~Gad-m---I~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~f 203 (287)
T TIGR00343 132 N----EGAA-M---IRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNF 203 (287)
T ss_pred H----CCCC-E---EeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEe
Confidence 4 2221 1 01111100 112457777888877 789997 3
Q ss_pred cCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 124 ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
+- ||... +.-+..+..+||+|+++=+-++
T Consensus 204 -Ai------------------GGI~T--PedAa~~melGAdGVaVGSaI~ 232 (287)
T TIGR00343 204 -AA------------------GGVAT--PADAALMMQLGADGVFVGSGIF 232 (287)
T ss_pred -cc------------------CCCCC--HHHHHHHHHcCCCEEEEhHHhh
Confidence 11 12100 4455677889999999987765
No 248
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=84.98 E-value=4.4 Score=36.04 Aligned_cols=79 Identities=28% Similarity=0.426 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCC-------CcEEEEee----cCC--------CCCCCCCccchhHHHHHh-cCCCEEEcCCCCCC
Q 027740 71 ASSVMVNSAEKVRLAGN-------PNVMVCER----GTM--------FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQ 130 (219)
Q Consensus 71 t~~ei~~A~e~i~~~Gn-------~~i~L~~c----gs~--------~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~ 130 (219)
+.-|...|+|.+...|- .+.++|.| |.. -+...--.|.-+|..+++ +++||++|.--
T Consensus 115 D~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGi--- 191 (262)
T COG2022 115 DPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGI--- 191 (262)
T ss_pred ChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCC---
Confidence 56677778887666652 23333322 111 122223457778888888 99999987433
Q ss_pred CCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 131 QPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
|. ++-+..|..+|+||+++..-
T Consensus 192 ---------------G~----pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 192 ---------------GT----PSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred ---------------CC----hhHHHHHHhcccceeehhhH
Confidence 22 45567889999999988765
No 249
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=84.97 E-value=8.1 Score=35.59 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=62.8
Q ss_pred cccccCCCCCCCH---HHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-eecCC--------CCCCC
Q 027740 37 DIIQIPAFLCRQT---DLLVAAAKT-GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-ERGTM--------FGYND 103 (219)
Q Consensus 37 d~~kI~S~~~~n~---~LL~~~a~~-gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~-~cgs~--------~~~~~ 103 (219)
|++.|-+..=.+. +.++++.+. ..|.+++-+.. |.+...... ..|..-|.+- +.|+. .+.+.
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~-t~e~a~~l~----~aGad~I~V~~G~G~~~~tr~~~g~g~~~ 184 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVG-TPEAVRELE----NAGADATKVGIGPGKVCITKIKTGFGTGG 184 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCC-CHHHHHHHH----HcCcCEEEECCCCCccccceeeeccCCCc
Confidence 5555555444444 445555553 56878888776 888776654 4677655443 22221 11211
Q ss_pred CCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeec
Q 027740 104 LIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 104 ~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~ 172 (219)
-.+.+|...++ .+.||+.|. |.|.- ..+. -|.++||+++|+=.=|
T Consensus 185 --~~l~ai~ev~~a~~~pVIadG--------------------GIr~~-~Di~-KALa~GAd~Vmig~~~ 230 (321)
T TIGR01306 185 --WQLAALRWCAKAARKPIIADG--------------------GIRTH-GDIA-KSIRFGASMVMIGSLF 230 (321)
T ss_pred --hHHHHHHHHHHhcCCeEEEEC--------------------CcCcH-HHHH-HHHHcCCCEEeechhh
Confidence 13567777777 789998862 22211 2333 6778899999886544
No 250
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=84.86 E-value=30 Score=31.41 Aligned_cols=141 Identities=15% Similarity=0.155 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHhcCCCeEeee--CCcccHHHHhhh-ccccccCCCCCCC-HHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 027740 3 EGLKILEKVKIAYDIPIVTDV--HETVQCEEVGKV-ADIIQIPAFLCRQ-TDLLVAAAKTGKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~--~d~~~~~~l~~~-vd~~kI~S~~~~n-~~LL~~~a~~gkPVilstG~~~t~~ei~~A 78 (219)
++.+.+++..+...||++.=. -...+++.|.+. +|++- ++.-.+- .+++..+-.. --+.+-.+-+ |++|.+.|
T Consensus 52 ~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~~L~eaGvDiID-aT~r~rP~~~~~~~iK~~-~~~l~MAD~s-tleEal~a 128 (283)
T cd04727 52 ADPKMIKEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMID-ESEVLTPADEEHHIDKHK-FKVPFVCGAR-NLGEALRR 128 (283)
T ss_pred CCHHHHHHHHHhCCCCeEEeeehhHHHHHHHHHHcCCCEEe-ccCCCCcHHHHHHHHHHH-cCCcEEccCC-CHHHHHHH
Confidence 356677888888999998833 336778888888 99983 2222332 3466666443 2455557777 89998887
Q ss_pred HHHHHHcCCCcEEEEeecCC--------------------CCCC---------CCCccchhHHHHHh-cCCCEE--EcCC
Q 027740 79 AEKVRLAGNPNVMVCERGTM--------------------FGYN---------DLIVDPRNLEWMRE-ANCPVV--ADVT 126 (219)
Q Consensus 79 ~e~i~~~Gn~~i~L~~cgs~--------------------~~~~---------~~~~nl~~i~~lk~-~~~pV~--~ds~ 126 (219)
++ .|-.=|-=..+|.+ ++|. ....++..|..+++ .++||+ ....
T Consensus 129 ~~----~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGG 204 (283)
T cd04727 129 IS----EGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGG 204 (283)
T ss_pred HH----CCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCC
Confidence 65 34321100000000 0111 12357777888877 789996 3211
Q ss_pred -CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 127 -HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 127 -Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
|+ +.-+..+..+||+|+++=.-++
T Consensus 205 I~T-----------------------pena~~v~e~GAdgVaVGSAI~ 229 (283)
T cd04727 205 VAT-----------------------PADAALMMQLGADGVFVGSGIF 229 (283)
T ss_pred CCC-----------------------HHHHHHHHHcCCCEEEEcHHhh
Confidence 11 4556677889999999877765
No 251
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=84.79 E-value=27 Score=32.08 Aligned_cols=117 Identities=19% Similarity=0.118 Sum_probs=70.5
Q ss_pred CCHHHHHHHHhcCC--e--EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-eecCCCCCCCCCccchhHHHHHhcCCCE
Q 027740 47 RQTDLLVAAAKTGK--I--INIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-ERGTMFGYNDLIVDPRNLEWMREANCPV 121 (219)
Q Consensus 47 ~n~~LL~~~a~~gk--P--VilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~-~cgs~~~~~~~~~nl~~i~~lk~~~~pV 121 (219)
...+.++++.+..+ . +++--|.. +.+++..|.+ .|..-+-++ ||. ..+.-...+...|+.++.|
T Consensus 63 ~~~e~i~~~~~~~~~~~~~~ll~pg~~-~~~dl~~a~~----~gvd~iri~~~~~------e~~~~~~~i~~ak~~G~~v 131 (337)
T PRK08195 63 TDEEYIEAAAEVVKQAKIAALLLPGIG-TVDDLKMAYD----AGVRVVRVATHCT------EADVSEQHIGLARELGMDT 131 (337)
T ss_pred CHHHHHHHHHHhCCCCEEEEEeccCcc-cHHHHHHHHH----cCCCEEEEEEecc------hHHHHHHHHHHHHHCCCeE
Confidence 35677777754322 2 22333555 8888877664 466544433 332 1123456667777666655
Q ss_pred EEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 122 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 122 ~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
.+....+. .-..+.+...+..+..+||+.+- +.|..-.+.|+++.++++.+++
T Consensus 132 ~~~l~~a~---------------~~~~e~l~~~a~~~~~~Ga~~i~----------i~DT~G~~~P~~v~~~v~~l~~ 184 (337)
T PRK08195 132 VGFLMMSH---------------MAPPEKLAEQAKLMESYGAQCVY----------VVDSAGALLPEDVRDRVRALRA 184 (337)
T ss_pred EEEEEecc---------------CCCHHHHHHHHHHHHhCCCCEEE----------eCCCCCCCCHHHHHHHHHHHHH
Confidence 54332220 01134455667778899998321 4799999999999999999885
No 252
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=84.62 E-value=5 Score=36.38 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=61.1
Q ss_pred HHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCC-------CCCCCHHHHHHHHhc-CCeEEEeCCCCCCHHHHHHH
Q 027740 8 LEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPA-------FLCRQTDLLVAAAKT-GKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 8 L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S-------~~~~n~~LL~~~a~~-gkPVilstG~~~t~~ei~~A 78 (219)
+.+..++.|+.++.++.+.+.+..+.+. +|++-+=+ +...++.|+.++.+. +.||+..-|.. +.+++..+
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~-~~~~~~~a 179 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIA-DGRGMAAA 179 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCC-CHHHHHHH
Confidence 4555677899999999999888888888 99987722 133468888888764 79999999999 99988877
Q ss_pred HHHHHHcCCCcEEE
Q 027740 79 AEKVRLAGNPNVMV 92 (219)
Q Consensus 79 ~e~i~~~Gn~~i~L 92 (219)
.. .|..-+++
T Consensus 180 l~----~GA~gV~i 189 (307)
T TIGR03151 180 FA----LGAEAVQM 189 (307)
T ss_pred HH----cCCCEeec
Confidence 64 46654443
No 253
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=84.49 E-value=9.2 Score=35.42 Aligned_cols=93 Identities=24% Similarity=0.272 Sum_probs=57.3
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCCCCccchhHHHH-Hh--cCCCEEEc
Q 027740 49 TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYNDLIVDPRNLEWM-RE--ANCPVVAD 124 (219)
Q Consensus 49 ~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~~~~nl~~i~~l-k~--~~~pV~~d 124 (219)
...|+ ..|..||++| |.- +-+|.+.|+| .|..-|++-.-|..- .|-+ .-+.+++.. +. -.+||.+|
T Consensus 215 i~wLr--~~T~LPIvvK-Gil-t~eDA~~Ave----~G~~GIIVSNHGgRQlD~vp--AtI~~L~Evv~aV~~ri~V~lD 284 (363)
T KOG0538|consen 215 IKWLR--SITKLPIVVK-GVL-TGEDARKAVE----AGVAGIIVSNHGGRQLDYVP--ATIEALPEVVKAVEGRIPVFLD 284 (363)
T ss_pred hHHHH--hcCcCCeEEE-eec-ccHHHHHHHH----hCCceEEEeCCCccccCccc--chHHHHHHHHHHhcCceEEEEe
Confidence 44444 3478899997 555 7899998877 577778776666541 1111 123444443 22 25899887
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 125 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 125 s~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
.-- -.| ..+ .-|.|+||.|++|=+-+-
T Consensus 285 GGV----------------R~G-----~DV-lKALALGAk~VfiGRP~v 311 (363)
T KOG0538|consen 285 GGV----------------RRG-----TDV-LKALALGAKGVFIGRPIV 311 (363)
T ss_pred cCc----------------ccc-----hHH-HHHHhcccceEEecCchh
Confidence 321 124 233 468999999999976543
No 254
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=84.46 E-value=9.2 Score=35.37 Aligned_cols=100 Identities=14% Similarity=0.130 Sum_probs=66.6
Q ss_pred HHHHHHHhcCCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCC
Q 027740 50 DLLVAAAKTGKIINIKKGQF--CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVT 126 (219)
Q Consensus 50 ~LL~~~a~~gkPVilstG~~--~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~ 126 (219)
+.++++-+.|..|-++--.+ .+++.+...++.+.+.|...|.||..... -+|. ++ ..-+..+++ +++|+++ +.
T Consensus 117 ~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~-~~P~-~v-~~lv~~l~~~~~v~l~~-H~ 192 (365)
T TIGR02660 117 RLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGI-LDPF-ST-YELVRALRQAVDLPLEM-HA 192 (365)
T ss_pred HHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCC-CCHH-HH-HHHHHHHHHhcCCeEEE-Ee
Confidence 55666666788777664332 25777888888888889888877775443 1232 22 244566777 7899998 77
Q ss_pred CCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 127 HSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 127 Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
|-. .| +-..-+++|+..||+ .|+.-+.
T Consensus 193 HNd---------------~G---lA~ANalaA~~aGa~--~vd~tl~ 219 (365)
T TIGR02660 193 HND---------------LG---MATANTLAAVRAGAT--HVNTTVN 219 (365)
T ss_pred cCC---------------CC---hHHHHHHHHHHhCCC--EEEEEee
Confidence 752 13 225567899999999 7876544
No 255
>PRK02227 hypothetical protein; Provisional
Probab=84.30 E-value=2.7 Score=37.14 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=91.3
Q ss_pred CeEeeeCCcccHHHHhhh-cccc--ccCCC---CCCCHHHHHHHHh---cCCeEEEeCCCC-CCHHHHHHHHHHHHHcCC
Q 027740 18 PIVTDVHETVQCEEVGKV-ADII--QIPAF---LCRQTDLLVAAAK---TGKIINIKKGQF-CASSVMVNSAEKVRLAGN 87 (219)
Q Consensus 18 ~~~tt~~d~~~~~~l~~~-vd~~--kI~S~---~~~n~~LL~~~a~---~gkPVilstG~~-~t~~ei~~A~e~i~~~Gn 87 (219)
..+.+|.|.+......+- +|++ |=|+. =..-...++++-. ..+||=--.|-. ..+.++..++.-....|-
T Consensus 2 ~lLvSvr~~eEA~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~Gv 81 (238)
T PRK02227 2 RLLVSVRNLEEALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGA 81 (238)
T ss_pred ceeeccCCHHHHHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCC
Confidence 356677777777766555 6664 33333 1222333333333 237776666632 156788888887877787
Q ss_pred CcEEEEeecCCCCCCCCCccchhHH----HHHhc--C---CCEEEcCCCC-CCCCCCCccCCCCccCCCCcccHHHHHHH
Q 027740 88 PNVMVCERGTMFGYNDLIVDPRNLE----WMREA--N---CPVVADVTHS-LQQPAGKKLDGGGVASGGLRELIPCIART 157 (219)
Q Consensus 88 ~~i~L~~cgs~~~~~~~~~nl~~i~----~lk~~--~---~pV~~ds~Hs-~~~~~~~~~~~~~~~~~G~~~~~~~~~~a 157 (219)
..| ..|- |+..+..-.+..+. ..+.+ + ++|+| +||. .+.++ - ..+...
T Consensus 82 DyV---KvGl-~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~y-aD~~r~~~~~------------~-----~~l~~~ 139 (238)
T PRK02227 82 DYV---KVGL-YGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGY-ADAHRVGSVS------------P-----LSLPAI 139 (238)
T ss_pred CEE---EEcC-CCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEe-cccccccCCC------------h-----HHHHHH
Confidence 633 3332 22222111122221 12221 2 46766 7864 21111 1 355667
Q ss_pred HHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 027740 158 AIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAK 202 (219)
Q Consensus 158 AvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~ 202 (219)
+.+.|++|+||..-.---+++-|| ++.++|+++++.+|..--
T Consensus 140 a~~aGf~g~MlDTa~Kdg~~Lfd~---l~~~~L~~Fv~~ar~~Gl 181 (238)
T PRK02227 140 AADAGFDGAMLDTAIKDGKSLFDH---MDEEELAEFVAEARSHGL 181 (238)
T ss_pred HHHcCCCEEEEecccCCCcchHhh---CCHHHHHHHHHHHHHccc
Confidence 788999999997665555566677 789999999999997643
No 256
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=84.01 E-value=14 Score=30.97 Aligned_cols=133 Identities=15% Similarity=0.114 Sum_probs=75.4
Q ss_pred HHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 027740 7 ILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 86 (219)
Q Consensus 7 ~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~G 86 (219)
.++..|+++|..++-|+|-... ..+..--.. ..++ .....+.|++++-+.. +++++..+++.+.+.|
T Consensus 14 ~fR~l~~~~~~~~~~t~~~~~~-~~~~~~~~~----------~~~~-~~~~~~~p~~~qi~g~-~~~~~~~aa~~~~~aG 80 (231)
T cd02801 14 PFRLLCRRYGADLVYTEMISAK-ALLRGNRKR----------LRLL-TRNPEERPLIVQLGGS-DPETLAEAAKIVEELG 80 (231)
T ss_pred HHHHHHHHHCCCEEEecCEEEh-hhhhcCHHH----------HHhh-ccCccCCCEEEEEcCC-CHHHHHHHHHHHHhcC
Confidence 4677888899777777664432 111110000 1111 2234588999999877 9999999999999888
Q ss_pred CCcEEEEeecCC--------CCC---CCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHH
Q 027740 87 NPNVMVCERGTM--------FGY---NDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCI 154 (219)
Q Consensus 87 n~~i~L~~cgs~--------~~~---~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~ 154 (219)
.. .+=+|+++- |+. .+.......+..+++ .+.||.++-.-+. ...+-....
T Consensus 81 ~d-~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~----------------~~~~~~~~~ 143 (231)
T cd02801 81 AD-GIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW----------------DDEEETLEL 143 (231)
T ss_pred CC-EEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc----------------CCchHHHHH
Confidence 75 444565542 111 111223345666666 5677776433221 000112345
Q ss_pred HHHHHHcCCcEEEEeee
Q 027740 155 ARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 155 ~~aAvalGA~GlvIEkH 171 (219)
+.....+|++ +|..|
T Consensus 144 ~~~l~~~Gvd--~i~v~ 158 (231)
T cd02801 144 AKALEDAGAS--ALTVH 158 (231)
T ss_pred HHHHHHhCCC--EEEEC
Confidence 5566778999 55555
No 257
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=83.84 E-value=4.2 Score=37.99 Aligned_cols=75 Identities=9% Similarity=-0.000 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCCeEe-eeCCcccHHHHhhh-ccccccCCCC--------CC--CHHHHH---HHHh-----------c
Q 027740 5 LKILEKVKIAYDIPIVT-DVHETVQCEEVGKV-ADIIQIPAFL--------CR--QTDLLV---AAAK-----------T 58 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~--------~~--n~~LL~---~~a~-----------~ 58 (219)
-..+.+.+++.+++++. .+++.+++..+.+. +|.+++|... .. -.|++. .+++ .
T Consensus 176 ~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~ 255 (368)
T PRK08649 176 PLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGR 255 (368)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCC
Confidence 45578888899999998 99999999988888 9999998432 11 134443 3221 1
Q ss_pred CCeEEEeCCCCCCHHHHHHHHH
Q 027740 59 GKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 59 gkPVilstG~~~t~~ei~~A~e 80 (219)
+.|||-.=|.. +..++..|+.
T Consensus 256 ~vpVIAdGGI~-~~~diakAla 276 (368)
T PRK08649 256 YVHVIADGGIG-TSGDIAKAIA 276 (368)
T ss_pred CCeEEEeCCCC-CHHHHHHHHH
Confidence 58999999999 9999998865
No 258
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=83.78 E-value=19 Score=32.52 Aligned_cols=109 Identities=18% Similarity=0.225 Sum_probs=64.8
Q ss_pred ccccccCCCCCCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL~~----~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|++.+++ +-+.+.||||..... ... + . +.+. + ...+
T Consensus 13 ~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~-~~~-------~---~--------------~~~~--~-~~~~ 64 (282)
T TIGR01858 13 AGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPG-TFK-------H---A--------------GTEY--I-VALC 64 (282)
T ss_pred HcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcc-HHh-------h---C--------------CHHH--H-HHHH
Confidence 4567789999999765544 445678888876654 211 0 0 1110 0 1233
Q ss_pred HHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHH
Q 027740 112 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNL 190 (219)
Q Consensus 112 ~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el 190 (219)
..+.+ +.+||.+-=||.. . ......|+.+|.+.+|+. .+ +++.+|=
T Consensus 65 ~~~a~~~~VPValHLDHg~----------------~-----~e~i~~ai~~GFtSVM~D-----------gS-~lp~eeN 111 (282)
T TIGR01858 65 SAASTTYNMPLALHLDHHE----------------S-----LDDIRQKVHAGVRSAMID-----------GS-HFPFAQN 111 (282)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCEEeec-----------CC-CCCHHHH
Confidence 33444 7899999888873 2 566788999999877764 22 3555554
Q ss_pred HHHHHHHHHHHHHhC
Q 027740 191 EELLEELVAIAKVSK 205 (219)
Q Consensus 191 ~~lv~~ir~i~~~lg 205 (219)
=++.+++.+.....|
T Consensus 112 i~~T~~vv~~Ah~~g 126 (282)
T TIGR01858 112 VKLVKEVVDFCHRQD 126 (282)
T ss_pred HHHHHHHHHHHHHcC
Confidence 445555544444444
No 259
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=83.57 E-value=34 Score=30.96 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=64.6
Q ss_pred ccccccCCCCCCCHHHHH----HHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccc-hh
Q 027740 36 ADIIQIPAFLCRQTDLLV----AAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP-RN 110 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL~----~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl-~~ 110 (219)
-.-|-||++++.|...++ ++-+.+.||||..... +. . +. +++ .+ ..
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~-~~----------~----------~~----g~~----~~~~~ 65 (283)
T PRK07998 15 EKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPT-NA----------Q----------LS----GYD----YIYEI 65 (283)
T ss_pred HCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHh-HH----------h----------hC----CHH----HHHHH
Confidence 456889999999976554 4445688888876543 11 0 00 111 11 22
Q ss_pred HHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHH
Q 027740 111 LEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRN 189 (219)
Q Consensus 111 i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~e 189 (219)
+..+.+ +.+||.+--||.. . ......|+.+|.+.+|| |++ .++.+|
T Consensus 66 ~~~~A~~~~vPV~lHLDH~~----------------~-----~e~i~~Ai~~GftSVM~-----------DgS-~l~~ee 112 (283)
T PRK07998 66 VKRHADKMDVPVSLHLDHGK----------------T-----FEDVKQAVRAGFTSVMI-----------DGA-ALPFEE 112 (283)
T ss_pred HHHHHHHCCCCEEEECcCCC----------------C-----HHHHHHHHHcCCCEEEE-----------eCC-CCCHHH
Confidence 333444 7899999888873 2 44566789999998888 332 355554
Q ss_pred HHHHHHHHHHHHHHhC
Q 027740 190 LEELLEELVAIAKVSK 205 (219)
Q Consensus 190 l~~lv~~ir~i~~~lg 205 (219)
=-+..+++.+.....|
T Consensus 113 Ni~~T~~vve~Ah~~g 128 (283)
T PRK07998 113 NIAFTKEAVDFAKSYG 128 (283)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 4444444444444444
No 260
>PRK00915 2-isopropylmalate synthase; Validated
Probab=83.46 E-value=10 Score=36.86 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=68.6
Q ss_pred HHHHHHHhcCCeEEEeC--CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cC----CCEE
Q 027740 50 DLLVAAAKTGKIINIKK--GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN----CPVV 122 (219)
Q Consensus 50 ~LL~~~a~~gkPVilst--G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~----~pV~ 122 (219)
+.++++.+.|.-|.++- +.-.+++.+...++.+...|...|.||..... -+|. ++ .+-+..+++ +. +|++
T Consensus 124 ~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~-~~-~~~i~~l~~~~~~~~~v~l~ 200 (513)
T PRK00915 124 EAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGY-TTPE-EF-GELIKTLRERVPNIDKAIIS 200 (513)
T ss_pred HHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC-CCHH-HH-HHHHHHHHHhCCCcccceEE
Confidence 56667777888888886 43346777888888888889887777776543 2332 22 245666776 54 7898
Q ss_pred EcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 123 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 123 ~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
+ +.|-. .| +...-+++|+..||+ .|+.-+.
T Consensus 201 ~-H~HND---------------~G---lAvANslaAv~aGa~--~Vd~Tv~ 230 (513)
T PRK00915 201 V-HCHND---------------LG---LAVANSLAAVEAGAR--QVECTIN 230 (513)
T ss_pred E-EecCC---------------CC---HHHHHHHHHHHhCCC--EEEEEee
Confidence 8 77752 13 335567899999998 7887654
No 261
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=83.34 E-value=5.6 Score=36.50 Aligned_cols=88 Identities=25% Similarity=0.259 Sum_probs=53.5
Q ss_pred CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCCCC---CCccchh----HHHHHh-cCCCEEEcCCCCCC
Q 027740 60 KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGYND---LIVDPRN----LEWMRE-ANCPVVADVTHSLQ 130 (219)
Q Consensus 60 kPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~-~~~~~---~~~nl~~----i~~lk~-~~~pV~~ds~Hs~~ 130 (219)
.||+.+.+.. +.++|..-+..+...++-+ .++...+ .+.+. ..-|... +.++|. +..||.+=-+
T Consensus 97 ~~i~~~~~~~-~~~~~~d~~~~~~~~~~ad--~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~---- 169 (310)
T COG0167 97 VNIGKNKGGP-SEEAWADYARLLEEAGDAD--AIELNISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLA---- 169 (310)
T ss_pred cceEEecCCC-cHHHHHHHHHHHHhcCCCC--EEEEEccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeC----
Confidence 3477777776 8999999999999998733 3444443 23221 0111112 224566 6889876110
Q ss_pred CCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 131 QPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
| ..+-+..++.++...|+||+++=
T Consensus 170 -P--------------~~~di~~iA~~~~~~g~Dgl~~~ 193 (310)
T COG0167 170 -P--------------NITDIDEIAKAAEEAGADGLIAI 193 (310)
T ss_pred -C--------------CHHHHHHHHHHHHHcCCcEEEEE
Confidence 0 11224678899999999997653
No 262
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=83.32 E-value=30 Score=32.01 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 027740 49 TDLLVAAAKTGKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 49 ~~LL~~~a~~gkPVilstG~~~t~~ei~~A 78 (219)
..+-+++++.|.|..+|+....+++|+..+
T Consensus 84 ~~~AraA~~~gi~~~lss~s~~s~e~v~~~ 113 (344)
T cd02922 84 LNLARAAGKHGILQMISTNASCSLEEIVDA 113 (344)
T ss_pred HHHHHHHHHcCCCEEecCcccCCHHHHHHh
Confidence 578899999999999999998899997765
No 263
>PRK15063 isocitrate lyase; Provisional
Probab=83.26 E-value=29 Score=33.30 Aligned_cols=165 Identities=16% Similarity=0.101 Sum_probs=101.9
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 82 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i 82 (219)
|=+.|.+..++.+....--++|+-++..+++. .+.+.+.++.+.... -.+..|.| --|.. +.+++.+.++.|
T Consensus 51 ~a~kLr~lL~~~~~~~~~Ga~d~~~A~q~~~aGf~AIy~SG~~vAa~~---~~s~~g~P---D~~l~-p~~~v~~~v~~I 123 (428)
T PRK15063 51 GAEKLWELLHGEPYVNALGALTGNQAVQQVKAGLKAIYLSGWQVAADA---NLAGQMYP---DQSLY-PANSVPAVVKRI 123 (428)
T ss_pred HHHHHHHHHhCCCcEEecCCCCHHHHHHHHHhCCCEEEECHHHHhcCc---ccccCCCC---CcccC-CHHHHHHHHHHH
Confidence 44567777777777777788999988888887 888888887654310 01244556 33555 888888888877
Q ss_pred HHcCC--CcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH
Q 027740 83 RLAGN--PNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA 160 (219)
Q Consensus 83 ~~~Gn--~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAva 160 (219)
...=. .++.... + . .+ ..| +-+||+.|.|-.- || ..-+....+.-+.
T Consensus 124 ~~a~~~~d~~~~~~-~-~--~~--~~d---------~~~PIiADaDtGf---------------Gg-~~nv~~~vk~~ie 172 (428)
T PRK15063 124 NNALRRADQIQWSE-G-D--KG--YID---------YFAPIVADAEAGF---------------GG-VLNAFELMKAMIE 172 (428)
T ss_pred HHHHHHhhhHhhhh-c-c--cc--ccc---------CCCCeEEECCCCC---------------CC-cHHHHHHHHHHHH
Confidence 43210 0110000 0 0 00 001 3389999988764 23 2224556778899
Q ss_pred cCCcEEEEeeecC-CCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 027740 161 VGVDGVFMEVHDD-PLNAP-VDGPTQWPLRNLEELLEELVAIAKVSKG 206 (219)
Q Consensus 161 lGA~GlvIEkH~t-~d~a~-~D~~~sl~p~el~~lv~~ir~i~~~lg~ 206 (219)
+||.|+-||--.. |.|-- -+++.-.+.+|+-+=+..+|.....+|.
T Consensus 173 AGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~ 220 (428)
T PRK15063 173 AGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGV 220 (428)
T ss_pred cCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCC
Confidence 9999999997754 44432 2566666777777767777766666664
No 264
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=83.14 E-value=29 Score=30.81 Aligned_cols=111 Identities=17% Similarity=0.164 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCeEEE-------eCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCE
Q 027740 50 DLLVAAAKTGKIINI-------KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPV 121 (219)
Q Consensus 50 ~LL~~~a~~gkPVil-------stG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV 121 (219)
+|..++.+.+.+||. |+|.-.+--+...-+....+.|-.-|-++--+..|+. ++.-+...++ .++||
T Consensus 31 ~~~~~l~~~~~~vIaEiKr~SPs~G~i~~~~d~~~~A~~y~~~GA~aISVlTe~~~F~G-----s~~~l~~v~~~v~~Pv 105 (247)
T PRK13957 31 PLRDSLKSRSFSIIAECKRKSPSAGELRADYHPVQIAKTYETLGASAISVLTDQSYFGG-----SLEDLKSVSSELKIPV 105 (247)
T ss_pred hHHHHHhCCCCeEEEEEecCCCCCCCcCCCCCHHHHHHHHHHCCCcEEEEEcCCCcCCC-----CHHHHHHHHHhcCCCE
Confidence 455555555556654 2342211112223334456677766655544444433 4566666777 78999
Q ss_pred EEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 122 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 122 ~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
.. -|-.. . +..-..|.++|||++++ ....++++++++|++..+.
T Consensus 106 L~-KDFIi----------------d-----~~QI~ea~~~GADavLL------------I~~~L~~~~l~~l~~~a~~ 149 (247)
T PRK13957 106 LR-KDFIL----------------D-----EIQIREARAFGASAILL------------IVRILTPSQIKSFLKHASS 149 (247)
T ss_pred Ee-ccccC----------------C-----HHHHHHHHHcCCCEEEe------------EHhhCCHHHHHHHHHHHHH
Confidence 87 56553 2 44455677799997654 3345567788888766553
No 265
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=83.10 E-value=10 Score=37.06 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=68.7
Q ss_pred HHHHHHHhcCCeEEEeCC-----CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEE
Q 027740 50 DLLVAAAKTGKIINIKKG-----QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVA 123 (219)
Q Consensus 50 ~LL~~~a~~gkPVilstG-----~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ 123 (219)
+.++++-+.|..|.++.- ...+++-+...++.+...|...+.|+..+.. -+|. ++ .+-+..+++ +++|+.+
T Consensus 130 ~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~-~~P~-~v-~~li~~l~~~~~v~i~~ 206 (524)
T PRK12344 130 DSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGG-TLPH-EV-AEIVAEVRAAPGVPLGI 206 (524)
T ss_pred HHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCC-cCHH-HH-HHHHHHHHHhcCCeEEE
Confidence 456666677888877543 1225777777788888889988888876543 2332 12 245666777 7899998
Q ss_pred cCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCC
Q 027740 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 174 (219)
Q Consensus 124 ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~ 174 (219)
+.|-. .| +...-+++|+..||+ .||.-+..
T Consensus 207 -H~HND---------------~G---lA~ANslaAi~aGa~--~Vd~Tl~G 236 (524)
T PRK12344 207 -HAHND---------------SG---CAVANSLAAVEAGAR--QVQGTING 236 (524)
T ss_pred -EECCC---------------CC---hHHHHHHHHHHhCCC--EEEEeccc
Confidence 77752 13 225567899999999 89887664
No 266
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.02 E-value=25 Score=31.43 Aligned_cols=100 Identities=14% Similarity=0.047 Sum_probs=63.0
Q ss_pred HHHHHHHhc---CCeEEEeCCCC------CCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCC-------CCCccchhHH
Q 027740 50 DLLVAAAKT---GKIINIKKGQF------CASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYN-------DLIVDPRNLE 112 (219)
Q Consensus 50 ~LL~~~a~~---gkPVilstG~~------~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~-------~~~~nl~~i~ 112 (219)
+.++++-+. +.||.++-... .+.+|+...++.+.+.|-.-|. ++.+... ++. ....++..+.
T Consensus 196 eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~-vs~g~~~~~~~~~~~~~~~~~~~~~~~~ 274 (327)
T cd02803 196 EIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALH-VSGGSYESPPPIIPPPYVPEGYFLELAE 274 (327)
T ss_pred HHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEE-eCCCCCcccccccCCCCCCcchhHHHHH
Confidence 556666553 57999876532 3789999999999988865443 3433321 111 1234666777
Q ss_pred HHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc-CCcEEEEeeec
Q 027740 113 WMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV-GVDGVFMEVHD 172 (219)
Q Consensus 113 ~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAval-GA~GlvIEkH~ 172 (219)
.+|+ .++||+....-. . ...+..+++. |||++.+=+-+
T Consensus 275 ~ir~~~~iPVi~~Ggi~-----------------t-----~~~a~~~l~~g~aD~V~igR~~ 314 (327)
T cd02803 275 KIKKAVKIPVIAVGGIR-----------------D-----PEVAEEILAEGKADLVALGRAL 314 (327)
T ss_pred HHHHHCCCCEEEeCCCC-----------------C-----HHHHHHHHHCCCCCeeeecHHH
Confidence 7887 899998743322 1 3446677777 79977776553
No 267
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=82.99 E-value=10 Score=35.82 Aligned_cols=91 Identities=11% Similarity=0.012 Sum_probs=70.7
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhhcc---ccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVAD---IIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd---~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~ 81 (219)
+..-.+...+.|++++---||++-+...-+.++ -+--++..=+.-++.+-+.+.+.|+.|+.- .+++++.+-+..
T Consensus 148 fa~ave~v~~~~~pv~l~s~dpevmkaaLev~~dqkPllYaAte~n~~e~~klav~y~vplvl~a~--~dl~~lk~la~~ 225 (467)
T COG1456 148 FAEAVEKVAEAGLPVILCSFDPEVMKAALEVVKDQKPLLYAATEDNWKEFAKLAVEYKVPLVLSAF--NDLDDLKNLAVT 225 (467)
T ss_pred HHHHHHHHHhcCCcEEEEeCCHHHHHHHHHHhhccCceeeecccccHHHHHHHHhhcCCcEEEecc--CCHHHHHHHHHH
Confidence 444555667899999999999998887555422 244466666677888988899999999983 279999999999
Q ss_pred HHHcCCCcEEEEeecCC
Q 027740 82 VRLAGNPNVMVCERGTM 98 (219)
Q Consensus 82 i~~~Gn~~i~L~~cgs~ 98 (219)
+++.|.++|+ ++-|+.
T Consensus 226 ~~~~Gi~div-LdPgT~ 241 (467)
T COG1456 226 YAQAGIKDIV-LDPGTY 241 (467)
T ss_pred HHHcCCceEE-ecCCcc
Confidence 9999999885 566664
No 268
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=82.92 E-value=8.6 Score=35.69 Aligned_cols=131 Identities=21% Similarity=0.139 Sum_probs=69.8
Q ss_pred CCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCCccchhHHHHHh-c--CCCE
Q 027740 46 CRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMRE-A--NCPV 121 (219)
Q Consensus 46 ~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~-~~~~~~~~nl~~i~~lk~-~--~~pV 121 (219)
.++..+-.....++.|||+|== . +.+++..++ +.|..-|.+-..|-+ .... ..-+.+|+.+++ . .+||
T Consensus 212 ~~w~~i~~~~~~~~~pvivKgv-~-~~~da~~~~----~~G~~~i~vs~hGGr~~d~~--~~~~~~L~~i~~~~~~~~~i 283 (356)
T PF01070_consen 212 LTWDDIEWIRKQWKLPVIVKGV-L-SPEDAKRAV----DAGVDGIDVSNHGGRQLDWG--PPTIDALPEIRAAVGDDIPI 283 (356)
T ss_dssp -SHHHHHHHHHHCSSEEEEEEE---SHHHHHHHH----HTT-SEEEEESGTGTSSTTS---BHHHHHHHHHHHHTTSSEE
T ss_pred CCHHHHHHHhcccCCceEEEec-c-cHHHHHHHH----hcCCCEEEecCCCcccCccc--cccccccHHHHhhhcCCeeE
Confidence 4444444444557999999844 3 788887664 478877777655543 2111 123566777776 3 5899
Q ss_pred EEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 027740 122 VADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIA 201 (219)
Q Consensus 122 ~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~ 201 (219)
.+|+ |.|. ..=..-|+++||+.+.|-.+|----+ .++..- --.-++.|-++++..=
T Consensus 284 ~~dg--------------------Gir~--g~Dv~kalaLGA~~v~igr~~l~~l~-~~g~~g-v~~~~~~l~~el~~~m 339 (356)
T PF01070_consen 284 IADG--------------------GIRR--GLDVAKALALGADAVGIGRPFLYALA-AGGEEG-VERVLEILKEELKRAM 339 (356)
T ss_dssp EEES--------------------S--S--HHHHHHHHHTT-SEEEESHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEeC--------------------CCCC--HHHHHHHHHcCCCeEEEccHHHHHHH-HhhHHH-HHHHHHHHHHHHHHHH
Confidence 8862 3332 12244789999999999887421100 011000 0113444555555555
Q ss_pred HHhCCCc
Q 027740 202 KVSKGKQ 208 (219)
Q Consensus 202 ~~lg~~~ 208 (219)
.++|...
T Consensus 340 ~l~G~~~ 346 (356)
T PF01070_consen 340 FLLGARS 346 (356)
T ss_dssp HHHT-SB
T ss_pred HHHCCCC
Confidence 5666543
No 269
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=82.62 E-value=21 Score=32.31 Aligned_cols=109 Identities=16% Similarity=0.133 Sum_probs=65.3
Q ss_pred ccccccCCCCCCCHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL----~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|.+.+ +++-+.+.||||..... .. .+ + +++ .=.+.+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~-~~-------~~-------------~----g~~---~~~~~~ 66 (284)
T PRK09195 15 RGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPG-TF-------SY-------------A----GTE---YLLAIV 66 (284)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChh-HH-------hh-------------C----CHH---HHHHHH
Confidence 45577899999997654 44555788888876654 11 00 0 111 001333
Q ss_pred HHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHH
Q 027740 112 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNL 190 (219)
Q Consensus 112 ~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el 190 (219)
..+.+ +.+||.+-=||.. . ......|+.+|.+.+|+. ++ .++.+|=
T Consensus 67 ~~~A~~~~VPV~lHLDHg~----------------~-----~e~i~~Ai~~GftSVM~D-----------gS-~l~~eeN 113 (284)
T PRK09195 67 SAAAKQYHHPLALHLDHHE----------------K-----FDDIAQKVRSGVRSVMID-----------GS-HLPFAQN 113 (284)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCEEEeC-----------CC-CCCHHHH
Confidence 44444 7899999888873 2 566788999999877764 32 3555554
Q ss_pred HHHHHHHHHHHHHhC
Q 027740 191 EELLEELVAIAKVSK 205 (219)
Q Consensus 191 ~~lv~~ir~i~~~lg 205 (219)
-++.+++.+.....|
T Consensus 114 i~~T~~vv~~Ah~~g 128 (284)
T PRK09195 114 ISLVKEVVDFCHRFD 128 (284)
T ss_pred HHHHHHHHHHHHHcC
Confidence 445444444444443
No 270
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=82.61 E-value=6 Score=35.17 Aligned_cols=145 Identities=21% Similarity=0.288 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHH---hhhccccccCCC----------CCCCHHHHHHHHh--cCCeEE----Ee
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEV---GKVADIIQIPAF----------LCRQTDLLVAAAK--TGKIIN----IK 65 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l---~~~vd~~kI~S~----------~~~n~~LL~~~a~--~gkPVi----ls 65 (219)
...+++..+.-|-.++|-.....+..-- ..+.++++--.. +...--...++|+ ++.++| +.
T Consensus 21 ~~~m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~ 100 (247)
T PF05690_consen 21 PEVMREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIG 100 (247)
T ss_dssp HHHHHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS
T ss_pred HHHHHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4567788888899988866555444431 233444442211 1111122233333 122222 11
Q ss_pred CCC--CCCHHHHHHHHHHHHHcCC-------CcEEEEee----cCC--------CCCCCCCccchhHHHHHh-cCCCEEE
Q 027740 66 KGQ--FCASSVMVNSAEKVRLAGN-------PNVMVCER----GTM--------FGYNDLIVDPRNLEWMRE-ANCPVVA 123 (219)
Q Consensus 66 tG~--~~t~~ei~~A~e~i~~~Gn-------~~i~L~~c----gs~--------~~~~~~~~nl~~i~~lk~-~~~pV~~ 123 (219)
-.. ..+.-|...|++.+...|- ++.++|.+ |.. -+...-..|..+|..+++ +++||++
T Consensus 101 D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIv 180 (247)
T PF05690_consen 101 DDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIV 180 (247)
T ss_dssp -TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEE
T ss_pred CCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEE
Confidence 111 2367888899998877773 23333322 111 133334567888888888 9999999
Q ss_pred cCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 124 ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
|.- + |. ++-+..|..+|+||+++..-
T Consensus 181 DAG--i----------------G~----pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 181 DAG--I----------------GT----PSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp ES---------------------S----HHHHHHHHHTT-SEEEESHH
T ss_pred eCC--C----------------CC----HHHHHHHHHcCCceeehhhH
Confidence 743 2 32 55667889999999999876
No 271
>PLN02623 pyruvate kinase
Probab=82.34 E-value=9.9 Score=37.79 Aligned_cols=88 Identities=13% Similarity=0.142 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhcC--CCeEeeeCCcccHHHHhhh---ccccccCCCCCCC-----------HHHHHHHHhcCCeEEEeC-
Q 027740 4 GLKILEKVKIAYD--IPIVTDVHETVQCEEVGKV---ADIIQIPAFLCRQ-----------TDLLVAAAKTGKIINIKK- 66 (219)
Q Consensus 4 gl~~L~~~~~~~G--i~~~tt~~d~~~~~~l~~~---vd~~kI~S~~~~n-----------~~LL~~~a~~gkPVilst- 66 (219)
-+..+++|.++.| +.+++-+-+++.++-+.+. +|.+.||-+|+.. ..+++.+-+.|||+++.|
T Consensus 305 DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQ 384 (581)
T PLN02623 305 VVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATN 384 (581)
T ss_pred HHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECc
Confidence 4677888887764 6688888888887777664 9999999998752 356666777899999877
Q ss_pred --------CCCCCHHHHHHHHHHHHHcCCCcEEEE
Q 027740 67 --------GQFCASSVMVNSAEKVRLAGNPNVMVC 93 (219)
Q Consensus 67 --------G~~~t~~ei~~A~e~i~~~Gn~~i~L~ 93 (219)
+.. |-.|+..+...+. .|-.-++|-
T Consensus 385 MLESMi~~~~P-TRAEv~Dva~av~-dG~d~vmLs 417 (581)
T PLN02623 385 MLESMIVHPTP-TRAEVSDIAIAVR-EGADAVMLS 417 (581)
T ss_pred hhhhcccCCCC-CchhHHHHHHHHH-cCCCEEEec
Confidence 555 7788888887765 466545543
No 272
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=82.33 E-value=25 Score=31.12 Aligned_cols=147 Identities=14% Similarity=0.129 Sum_probs=78.4
Q ss_pred HHhhh-ccccccCCCCCC--CHHHHHHHHhcC----CeEEEeCCCCCCHH-HHHHHHHHHHHcCCCcEEEEeecCCC---
Q 027740 31 EVGKV-ADIIQIPAFLCR--QTDLLVAAAKTG----KIINIKKGQFCASS-VMVNSAEKVRLAGNPNVMVCERGTMF--- 99 (219)
Q Consensus 31 ~l~~~-vd~~kI~S~~~~--n~~LL~~~a~~g----kPVilstG~~~t~~-ei~~A~e~i~~~Gn~~i~L~~cgs~~--- 99 (219)
.|.+. ++.+-+|+.... ..+.++.+.+.+ +.+.+.+.....+. .-+..++.....|...+.++-+.|.+
T Consensus 28 ~L~~~Gv~~IE~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~ 107 (273)
T cd07941 28 KLDELGVDYIEGGWPGSNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVT 107 (273)
T ss_pred HHHHcCCCEEEecCCcCCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCCCEEEEEEcCCHHHHH
Confidence 34444 666666654333 234455554443 22333322111111 00134555667788888888776631
Q ss_pred ---CCCC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 100 ---GYND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 100 ---~~~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
+... +.++ ...+...|+.++.|.+++-+... + +.-..+++...++.+..+|++.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d--~----------~~~~~~~~~~~~~~~~~~g~~~i~------ 169 (273)
T cd07941 108 EALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFD--G----------YKANPEYALATLKAAAEAGADWLV------ 169 (273)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccc--c----------CCCCHHHHHHHHHHHHhCCCCEEE------
Confidence 1111 1111 12233334467777764443310 0 001245566777888999998322
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 174 PLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 174 ~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
++|.--.++|+++.++++.+++
T Consensus 170 ----l~DT~G~~~P~~v~~lv~~l~~ 191 (273)
T cd07941 170 ----LCDTNGGTLPHEIAEIVKEVRE 191 (273)
T ss_pred ----EecCCCCCCHHHHHHHHHHHHH
Confidence 4788889999999999998885
No 273
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=82.29 E-value=5.7 Score=35.16 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCC-------CH-HHHHHHHhcCCeEEEeCCCCCCHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCR-------QT-DLLVAAAKTGKIINIKKGQFCASSV 74 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~-------n~-~LL~~~a~~gkPVilstG~~~t~~e 74 (219)
-|+.|.++|+.+|+.-+.+++|.+.++.+-++ +..+-|--|++. ++ -|++-+ ....-++--.|.+ |++|
T Consensus 174 ~lk~l~k~~K~L~me~LVEVn~~eEm~raleiGakvvGvNNRnL~sFeVDlstTskL~E~i-~kDvilva~SGi~-tpdD 251 (289)
T KOG4201|consen 174 LLKELYKISKDLGMEPLVEVNDEEEMQRALEIGAKVVGVNNRNLHSFEVDLSTTSKLLEGI-PKDVILVALSGIF-TPDD 251 (289)
T ss_pred HHHHHHHHHHHcCCcceeeeccHHHHHHHHHhCcEEEeecCCccceeeechhhHHHHHhhC-ccceEEEeccCCC-CHHH
Confidence 48899999999999999999999999988887 777777666543 22 344433 2345556678999 9999
Q ss_pred HHHHHHHHHHcCCCcEEEEeec
Q 027740 75 MVNSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 75 i~~A~e~i~~~Gn~~i~L~~cg 96 (219)
+. +.+++|.+-+.+-+.-
T Consensus 252 ia----~~q~~GV~avLVGEsl 269 (289)
T KOG4201|consen 252 IA----KYQKAGVKAVLVGESL 269 (289)
T ss_pred HH----HHHHcCceEEEecHHH
Confidence 75 5788898777666643
No 274
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=82.23 E-value=19 Score=32.94 Aligned_cols=47 Identities=28% Similarity=0.307 Sum_probs=32.4
Q ss_pred CccchhHHHHHh-cCCCEE--EcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 105 IVDPRNLEWMRE-ANCPVV--ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 105 ~~nl~~i~~lk~-~~~pV~--~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
..++..|..+++ .++||+ .-. |... +.-+..+..+||+|+++=+-++
T Consensus 189 ~~~~elL~ei~~~~~iPVV~~AeG--------------------GI~T--Pedaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 189 QAPYELVKEVAELGRLPVVNFAAG--------------------GIAT--PADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred CCCHHHHHHHHHhCCCCEEEEEeC--------------------CCCC--HHHHHHHHHhCCCEEEEcHHhh
Confidence 467788888887 789996 321 2100 4455567789999999987765
No 275
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=82.22 E-value=11 Score=36.92 Aligned_cols=147 Identities=10% Similarity=-0.017 Sum_probs=86.8
Q ss_pred HHhhh-ccccccCCC--CCCCHHHHHHHHhcCC--eEEEeCCCCCCH---HHHHHHHHHHHHcCCCcEEEEeecCCC---
Q 027740 31 EVGKV-ADIIQIPAF--LCRQTDLLVAAAKTGK--IINIKKGQFCAS---SVMVNSAEKVRLAGNPNVMVCERGTMF--- 99 (219)
Q Consensus 31 ~l~~~-vd~~kI~S~--~~~n~~LL~~~a~~gk--PVilstG~~~t~---~ei~~A~e~i~~~Gn~~i~L~~cgs~~--- 99 (219)
.|.++ ++.+-+|-. .-...+.++++++.+. +-+..-+..... -+++..++.....|.+.+.+.-.+|..
T Consensus 31 ~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~ 110 (526)
T TIGR00977 31 RLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHVL 110 (526)
T ss_pred HHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHHH
Confidence 34445 666666522 2234566676765442 333332211011 155667777888888888888776631
Q ss_pred ---CCCC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 100 ---GYND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 100 ---~~~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
+... +.++ ...+..+|+.+..|.+++.|.. +. +.-..+++..++.++..+||+-+.
T Consensus 111 ~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~-D~-----------~r~~~~~l~~~~~~a~~aGad~i~------ 172 (526)
T TIGR00977 111 EALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFF-DG-----------YKANPEYALATLATAQQAGADWLV------ 172 (526)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeee-ec-----------ccCCHHHHHHHHHHHHhCCCCeEE------
Confidence 1111 1111 1223344556778888777652 00 001356788888999999998332
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 174 PLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 174 ~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
++|---.++|.++.++++.+++
T Consensus 173 ----i~DTvG~~~P~~v~~li~~l~~ 194 (526)
T TIGR00977 173 ----LCDTNGGTLPHEISEITTKVKR 194 (526)
T ss_pred ----EecCCCCcCHHHHHHHHHHHHH
Confidence 4688889999999999999875
No 276
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=82.19 E-value=33 Score=29.83 Aligned_cols=142 Identities=9% Similarity=0.048 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc--CCeEEEeCC------------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT--GKIINIKKG------------ 67 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~--gkPVilstG------------ 67 (219)
+..+++.+++.-.++-. -+.+.++++.+-+. ++-+-|||...+|.++++++++. +-.|++|--
T Consensus 62 ~~~i~~i~~~~~~~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw 141 (232)
T PRK13586 62 EMYIKEISKIGFDWIQVGGGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGW 141 (232)
T ss_pred HHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCC
Confidence 46777887743224333 77888999988888 99999999999999999998764 234544211
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCC
Q 027740 68 QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGL 147 (219)
Q Consensus 68 ~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~ 147 (219)
.. +-.++...++.+.+.|...+++.. ...=+.. .=.|+..+..+++...||.+ + +|.
T Consensus 142 ~~-~~~~~~e~~~~l~~~g~~~ii~td-I~~dGt~-~G~d~el~~~~~~~~~~via--s------------------GGv 198 (232)
T PRK13586 142 KE-KSMEVIDGIKKVNELELLGIIFTY-ISNEGTT-KGIDYNVKDYARLIRGLKEY--A------------------GGV 198 (232)
T ss_pred ee-CCCCHHHHHHHHHhcCCCEEEEec-ccccccC-cCcCHHHHHHHHhCCCCEEE--E------------------CCC
Confidence 11 222455666677788887765543 3321111 12466667777664345655 1 232
Q ss_pred cccHHHHHHHHHHcCCcEEEEeee
Q 027740 148 RELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 148 ~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
+.. ..+. .+..+|++|.++=+-
T Consensus 199 ~s~-~Dl~-~l~~~G~~gvivg~A 220 (232)
T PRK13586 199 SSD-ADLE-YLKNVGFDYIIVGMA 220 (232)
T ss_pred CCH-HHHH-HHHHCCCCEEEEehh
Confidence 221 2232 334679999988553
No 277
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=82.08 E-value=17 Score=35.49 Aligned_cols=148 Identities=14% Similarity=0.084 Sum_probs=83.7
Q ss_pred HHhhh-ccccccCCCCCC--CHHHHHHHHhcC--CeEEEeCCCC--CCH-HHHHHHHHHHHHcCCCcEEEEeecCCC---
Q 027740 31 EVGKV-ADIIQIPAFLCR--QTDLLVAAAKTG--KIINIKKGQF--CAS-SVMVNSAEKVRLAGNPNVMVCERGTMF--- 99 (219)
Q Consensus 31 ~l~~~-vd~~kI~S~~~~--n~~LL~~~a~~g--kPVilstG~~--~t~-~ei~~A~e~i~~~Gn~~i~L~~cgs~~--- 99 (219)
.|.++ ++.+-+|..-.. ..+.++.+.+.+ .+-+..-.+. ..+ ...+..++.....|...+.++-.+|.+
T Consensus 35 ~L~~~Gvd~IEvG~p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~ 114 (524)
T PRK12344 35 KLDELGVDYIEGGWPGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSWDLHVT 114 (524)
T ss_pred HHHHcCCCEEEEcCCcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhCCCCEEEEEECCCHHHHH
Confidence 34445 666666553333 345667776533 2223222211 011 112445666777888888888766531
Q ss_pred ---CCCC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 100 ---GYND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 100 ---~~~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
+... +.++ ..++...|+.+..|.+++-|.... +--..+++..++.++...||+-+.
T Consensus 115 ~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da------------~r~d~~~l~~~~~~~~~~Gad~i~------ 176 (524)
T PRK12344 115 EALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDG------------YKANPEYALATLKAAAEAGADWVV------ 176 (524)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHcCCeEEEcccccccc------------ccCCHHHHHHHHHHHHhCCCCeEE------
Confidence 1111 1111 023334445677887766554200 001245667778889999998322
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHH
Q 027740 174 PLNAPVDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 174 ~d~a~~D~~~sl~p~el~~lv~~ir~i 200 (219)
++|---.++|.++.++++.+++.
T Consensus 177 ----l~DTvG~~~P~~v~~li~~l~~~ 199 (524)
T PRK12344 177 ----LCDTNGGTLPHEVAEIVAEVRAA 199 (524)
T ss_pred ----EccCCCCcCHHHHHHHHHHHHHh
Confidence 68999999999999999998754
No 278
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=82.05 E-value=14 Score=32.87 Aligned_cols=98 Identities=16% Similarity=0.097 Sum_probs=66.2
Q ss_pred HHHHHHhcCCeEEE------e---CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c-CC
Q 027740 51 LLVAAAKTGKIINI------K---KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-NC 119 (219)
Q Consensus 51 LL~~~a~~gkPVil------s---tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~-~~ 119 (219)
.++++-+.|+-|.+ + .|.. +++.+.+.++.+.+.|...|.|+...... .|. ++ .+-+..+++ + ++
T Consensus 119 ~v~~ak~~G~~v~~~i~~~f~~~~~~~~-~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~-~P~-~v-~~lv~~l~~~~~~~ 194 (274)
T cd07938 119 VAELAKAAGLRVRGYVSTAFGCPYEGEV-PPERVAEVAERLLDLGCDEISLGDTIGVA-TPA-QV-RRLLEAVLERFPDE 194 (274)
T ss_pred HHHHHHHCCCeEEEEEEeEecCCCCCCC-CHHHHHHHHHHHHHcCCCEEEECCCCCcc-CHH-HH-HHHHHHHHHHCCCC
Confidence 35566667876642 1 1344 78999999999999999888888765542 222 12 244666776 5 58
Q ss_pred CEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 120 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 120 pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
|+++ +.|-. .| +-..-+++|+..||+ +|+.-..
T Consensus 195 ~i~~-H~Hnd---------------~G---lA~AN~laA~~aGa~--~id~t~~ 227 (274)
T cd07938 195 KLAL-HFHDT---------------RG---QALANILAALEAGVR--RFDSSVG 227 (274)
T ss_pred eEEE-EECCC---------------CC---hHHHHHHHHHHhCCC--EEEEecc
Confidence 9999 78863 23 225557899999998 8886544
No 279
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=82.01 E-value=5.4 Score=37.96 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCccc
Q 027740 72 SSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 150 (219)
Q Consensus 72 ~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~ 150 (219)
+++...-.+.+.. |.+++.+|.-++ |+ -...|+..+..+.+ ++..|++|.+-. +
T Consensus 149 ~~~~~~~~~~i~~--~t~~V~~ESPsN-Pl-l~v~DI~~l~~la~~~g~~vvVDnTf~-----------------~---- 203 (409)
T KOG0053|consen 149 VDDLKKILKAIKE--NTKAVFLESPSN-PL-LKVPDIEKLARLAHKYGFLVVVDNTFG-----------------S---- 203 (409)
T ss_pred hhhHHHHHHhhcc--CceEEEEECCCC-Cc-cccccHHHHHHHHhhCCCEEEEeCCcC-----------------c----
Confidence 3444433333333 557888887665 22 14568888888877 899999987765 1
Q ss_pred HHHHHHHHHHcCCcEEEEee---ecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 027740 151 IPCIARTAIAVGVDGVFMEV---HDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 206 (219)
Q Consensus 151 ~~~~~~aAvalGA~GlvIEk---H~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~ 206 (219)
+ .-.-+..+||| +++++ -+.=+.+.--+..... ..++.+.++..+..+|.
T Consensus 204 -p-~~~~pL~lGAD-IV~hSaTKyi~Ghsdvi~G~iv~n---~~~~~~~l~~~~~~lg~ 256 (409)
T KOG0053|consen 204 -P-YNQDPLPLGAD-IVVHSATKYIGGHSDVIGGSVVLN---SEELASRLKFLQEDLGW 256 (409)
T ss_pred -c-cccChhhcCCC-EEEEeeeeeecCCcceeeeEEecC---cHHHHHHHHHHHHHhcC
Confidence 1 22356789999 77764 3333333323334443 55666666766677765
No 280
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=81.92 E-value=13 Score=34.29 Aligned_cols=120 Identities=16% Similarity=0.139 Sum_probs=67.4
Q ss_pred CcccHHHHhhh-c--cccccCCCCCCC---HHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEe--
Q 027740 25 ETVQCEEVGKV-A--DIIQIPAFLCRQ---TDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCE-- 94 (219)
Q Consensus 25 d~~~~~~l~~~-v--d~~kI~S~~~~n---~~LL~~~a~~--gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~-- 94 (219)
+.+.++.|.+. + |+++|-+.+=.+ .++++++-+. +.||+.++ .. |.++...+.+ .|..- +...
T Consensus 98 ~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~-V~-t~e~a~~l~~----aGad~-i~vg~~ 170 (326)
T PRK05458 98 EYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGN-VG-TPEAVRELEN----AGADA-TKVGIG 170 (326)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEe-cC-CHHHHHHHHH----cCcCE-EEECCC
Confidence 33445555544 3 888885555332 3456666553 35565542 33 8888877654 56543 3322
Q ss_pred ----ecCCC--CCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEE
Q 027740 95 ----RGTMF--GYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 167 (219)
Q Consensus 95 ----cgs~~--~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~Glv 167 (219)
|.+.- +....+..+.++..+++ .+.||+.|. |.+. ..-..-|.++||++++
T Consensus 171 ~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAdG--------------------GI~~--~~Di~KaLa~GA~aV~ 228 (326)
T PRK05458 171 PGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIADG--------------------GIRT--HGDIAKSIRFGATMVM 228 (326)
T ss_pred CCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEeC--------------------CCCC--HHHHHHHHHhCCCEEE
Confidence 22210 11111124556777777 789998752 2221 2223467888999999
Q ss_pred EeeecC
Q 027740 168 MEVHDD 173 (219)
Q Consensus 168 IEkH~t 173 (219)
+=..|+
T Consensus 229 vG~~~~ 234 (326)
T PRK05458 229 IGSLFA 234 (326)
T ss_pred echhhc
Confidence 988877
No 281
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=81.85 E-value=36 Score=30.08 Aligned_cols=164 Identities=20% Similarity=0.227 Sum_probs=104.5
Q ss_pred HHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCC--------HHHHHHHHhc-----CCeEEEeCCCCCCH
Q 027740 7 ILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQ--------TDLLVAAAKT-----GKIINIKKGQFCAS 72 (219)
Q Consensus 7 ~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n--------~~LL~~~a~~-----gkPVilstG~~~t~ 72 (219)
..+....-.++|+-.+.-+|+..-...+. .|++-||-||... -+.|.-.-+| ..|+=+--.--..+
T Consensus 52 LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~l 131 (242)
T PF04481_consen 52 LVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPL 131 (242)
T ss_pred HHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccH
Confidence 44556677899999999999888777777 9999999987652 2334333333 34555555555677
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCCccc--hhHHHHHh-------cCCCEEEcCCCCCCCCCCCccCCCCc
Q 027740 73 SVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLIVDP--RNLEWMRE-------ANCPVVADVTHSLQQPAGKKLDGGGV 142 (219)
Q Consensus 73 ~ei~~A~e~i~~~Gn~~i~L~~cgs~-~~~~~~~~nl--~~i~~lk~-------~~~pV~~ds~Hs~~~~~~~~~~~~~~ 142 (219)
++=.+-++.+.+.|. +++=.|-|++ .|+......+ .+.++|.. ..+||+. +|
T Consensus 132 d~Qv~LA~~L~~~Ga-DiIQTEGgtss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlc-AS---------------- 193 (242)
T PF04481_consen 132 DQQVQLAEDLVKAGA-DIIQTEGGTSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLC-AS---------------- 193 (242)
T ss_pred HHHHHHHHHHHHhCC-cEEEcCCCCCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEe-cc----------------
Confidence 777777777777786 6888888876 3443322221 44455532 4789986 33
Q ss_pred cCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Q 027740 143 ASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAKVSKG 206 (219)
Q Consensus 143 ~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~ 206 (219)
|.. ...+-.|+++||.|+=|=+-. -.++.--.|+..+|.+.+++.+
T Consensus 194 ---GlS---~vT~PmAiaaGAsGVGVGSav------------n~Ln~~~aMva~vr~l~~al~~ 239 (242)
T PF04481_consen 194 ---GLS---AVTAPMAIAAGASGVGVGSAV------------NRLNDEVAMVAAVRSLVEALSS 239 (242)
T ss_pred ---Ccc---hhhHHHHHHcCCcccchhHHh------------hhcccHHHHHHHHHHHHHHHhc
Confidence 222 233447888899875443321 1223456778888888887754
No 282
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=81.80 E-value=24 Score=31.69 Aligned_cols=153 Identities=14% Similarity=0.096 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCC------------CH---HHHHHHHh-cCCeEEEeC-
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCR------------QT---DLLVAAAK-TGKIINIKK- 66 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~------------n~---~LL~~~a~-~gkPVilst- 66 (219)
+..|++..++-...++.|.||..+...+++. +|++-+|+.... =. ...+++.+ .+.|+++--
T Consensus 4 ~~~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~Dm 83 (263)
T TIGR00222 4 TLSLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDL 83 (263)
T ss_pred HHHHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCC
Confidence 4556666555556668899999999999999 999999976321 11 33455555 355666521
Q ss_pred ---CCCCCHHHHHHHHH-HHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCc
Q 027740 67 ---GQFCASSVMVNSAE-KVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGV 142 (219)
Q Consensus 67 ---G~~~t~~ei~~A~e-~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~ 142 (219)
+.. ++++....+. .+++.|. +.+=+|-|.. -...+..+.+.++||..=---+.|.-. ..++=+
T Consensus 84 Pf~sy~-~~e~a~~na~rl~~eaGa-~aVkiEgg~~--------~~~~i~~l~~~gIpV~gHiGltPq~a~---~~ggy~ 150 (263)
T TIGR00222 84 PFMSYA-TPEQALKNAARVMQETGA-NAVKLEGGEW--------LVETVQMLTERGVPVVGHLGLTPQSVN---ILGGYK 150 (263)
T ss_pred CcCCCC-CHHHHHHHHHHHHHHhCC-eEEEEcCcHh--------HHHHHHHHHHCCCCEEEecCCCceeEe---ecCCee
Confidence 222 3545444333 3444555 4555564321 113344444468898710000000000 000000
Q ss_pred cCCCCc----ccHHHHHHHHHHcCCcEEEEeee
Q 027740 143 ASGGLR----ELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 143 ~~~G~~----~~~~~~~~aAvalGA~GlvIEkH 171 (219)
. .|+. +-+..-+++-..+||+++++|.=
T Consensus 151 ~-qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~v 182 (263)
T TIGR00222 151 V-QGKDEEAAKKLLEDALALEEAGAQLLVLECV 182 (263)
T ss_pred e-cCCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0 0211 12233456778899999999964
No 283
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.80 E-value=17 Score=31.36 Aligned_cols=112 Identities=14% Similarity=0.073 Sum_probs=70.2
Q ss_pred CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cC----CCEE
Q 027740 48 QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN----CPVV 122 (219)
Q Consensus 48 n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~----~pV~ 122 (219)
+.++++.+.+.+.--++..- +.++....++.+.+.|-+-+=+.-+ .+. -+.+|..+++ ++ +.||
T Consensus 3 ~~~~~~~l~~~~vi~vir~~---~~~~a~~~~~al~~~Gi~~iEit~~-----~~~---a~~~i~~l~~~~~~~p~~~vG 71 (213)
T PRK06552 3 KSEILTKLKANGVVAVVRGE---SKEEALKISLAVIKGGIKAIEVTYT-----NPF---ASEVIKELVELYKDDPEVLIG 71 (213)
T ss_pred chHHHHHHHHCCEEEEEECC---CHHHHHHHHHHHHHCCCCEEEEECC-----Ccc---HHHHHHHHHHHcCCCCCeEEe
Confidence 34567777776654444333 6999999999999998764444433 232 4678888887 63 5566
Q ss_pred EcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC-------CCCCCCCCChHHHHHHH
Q 027740 123 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA-------PVDGPTQWPLRNLEELL 194 (219)
Q Consensus 123 ~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a-------~~D~~~sl~p~el~~lv 194 (219)
. .+=. . ...+..|+.+||+ +++=-+++++-. .+=-+-..+|.|+.+..
T Consensus 72 a-GTV~-----------------~-----~~~~~~a~~aGA~-FivsP~~~~~v~~~~~~~~i~~iPG~~T~~E~~~A~ 126 (213)
T PRK06552 72 A-GTVL-----------------D-----AVTARLAILAGAQ-FIVSPSFNRETAKICNLYQIPYLPGCMTVTEIVTAL 126 (213)
T ss_pred e-eeCC-----------------C-----HHHHHHHHHcCCC-EEECCCCCHHHHHHHHHcCCCEECCcCCHHHHHHHH
Confidence 5 3322 2 5678899999999 566555555421 12223455676665554
No 284
>PRK07695 transcriptional regulator TenI; Provisional
Probab=81.76 E-value=29 Score=28.91 Aligned_cols=134 Identities=12% Similarity=0.018 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCCe-EeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 6 KILEKVKIAYDIPI-VTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~-~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
..+.+.+.+.|... --.+.| .++...++ ++.+-++..+..-..+.+.. .++.|.++. . |+++...+ .
T Consensus 44 ~~~~~~l~~~~~~~~~liin~--~~~la~~~~~~gvHl~~~~~~~~~~r~~~--~~~~ig~s~--~-s~e~a~~a----~ 112 (201)
T PRK07695 44 YEGVESLLKKGVPASKLIIND--RVDIALLLNIHRVQLGYRSFSVRSVREKF--PYLHVGYSV--H-SLEEAIQA----E 112 (201)
T ss_pred HHHHHHHHHhCCCCCeEEEEC--HHHHHHHcCCCEEEeCcccCCHHHHHHhC--CCCEEEEeC--C-CHHHHHHH----H
Confidence 33444445566641 112222 35666666 88888887665433333222 256777764 3 77776554 3
Q ss_pred HcCCCcEEEEeecCCCCCC-CCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 027740 84 LAGNPNVMVCERGTMFGYN-DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 161 (219)
Q Consensus 84 ~~Gn~~i~L~~cgs~~~~~-~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAval 161 (219)
+.|...+++-+-..+..-+ ....++..+..+++ +++||..- ||.. +.-...+.+.
T Consensus 113 ~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~--------------------GGI~---~~~~~~~~~~ 169 (201)
T PRK07695 113 KNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAI--------------------GGIT---PENTRDVLAA 169 (201)
T ss_pred HcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE--------------------cCCC---HHHHHHHHHc
Confidence 4577655432311110001 11235566666666 78998761 2321 2334466789
Q ss_pred CCcEEEEeeecC
Q 027740 162 GVDGVFMEVHDD 173 (219)
Q Consensus 162 GA~GlvIEkH~t 173 (219)
||+|+.+=.-++
T Consensus 170 Ga~gvav~s~i~ 181 (201)
T PRK07695 170 GVSGIAVMSGIF 181 (201)
T ss_pred CCCEEEEEHHHh
Confidence 999987655543
No 285
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=81.59 E-value=12 Score=33.00 Aligned_cols=77 Identities=22% Similarity=0.344 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCcc-----c-hhHHHHHh-cCCCEEEcCCCCCCCCCCCccCC
Q 027740 67 GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD-----P-RNLEWMRE-ANCPVVADVTHSLQQPAGKKLDG 139 (219)
Q Consensus 67 G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~n-----l-~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~ 139 (219)
|...+.+++...++...+.|-.-|=+.=+++..+.+.-+.. + ..+..+++ +++||.+|+.+
T Consensus 17 ~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~------------ 84 (257)
T TIGR01496 17 GRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYR------------ 84 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCC------------
Confidence 44457899999888888899876656333333222110001 1 23444556 69999998665
Q ss_pred CCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 140 GGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 140 ~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
+....+|+..|++ +|+
T Consensus 85 ------------~~vi~~al~~G~~--iIN 100 (257)
T TIGR01496 85 ------------AEVARAALEAGAD--IIN 100 (257)
T ss_pred ------------HHHHHHHHHcCCC--EEE
Confidence 4556677777887 676
No 286
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=81.57 E-value=41 Score=30.44 Aligned_cols=145 Identities=13% Similarity=0.043 Sum_probs=78.0
Q ss_pred ccccccCCCCCC-C---HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC-------CC
Q 027740 36 ADIIQIPAFLCR-Q---TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN-------DL 104 (219)
Q Consensus 36 vd~~kI~S~~~~-n---~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~-------~~ 104 (219)
+..+.|..++-. + .++++.+-+.|+.+.|.|.-. -+++. ++.+...|...+.+=--|....++ ..
T Consensus 73 ~~~V~i~GGEPLL~pdl~eiv~~~~~~g~~v~l~TNG~-ll~~~---~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f 148 (318)
T TIGR03470 73 APVVSIPGGEPLLHPEIDEIVRGLVARKKFVYLCTNAL-LLEKK---LDKFEPSPYLTFSVHLDGLREHHDASVCREGVF 148 (318)
T ss_pred CCEEEEeCccccccccHHHHHHHHHHcCCeEEEecCce-ehHHH---HHHHHhCCCcEEEEEEecCchhhchhhcCCCcH
Confidence 444445444322 3 355666666677777766644 34432 344555565444443233210011 11
Q ss_pred CccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCC
Q 027740 105 IVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQ 184 (219)
Q Consensus 105 ~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~s 184 (219)
+--+++|..+++.+++|.+..+-.. .-..+-+..+..-+..+|++++.+-.-+...++ +|+..-
T Consensus 149 ~~~l~~I~~l~~~G~~v~v~~tv~~---------------~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a-~~~~~~ 212 (318)
T TIGR03470 149 DRAVEAIREAKARGFRVTTNTTLFN---------------DTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKA-PDQDHF 212 (318)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEEeC---------------CCCHHHHHHHHHHHHHcCCCEEEEecCcccccc-cccccc
Confidence 1235667777666778776543211 011223455566678999998777544443444 345556
Q ss_pred CChHHHHHHHHHHHHH
Q 027740 185 WPLRNLEELLEELVAI 200 (219)
Q Consensus 185 l~p~el~~lv~~ir~i 200 (219)
++.++.+++.+.+.+.
T Consensus 213 l~~~e~~~~~~~~~~~ 228 (318)
T TIGR03470 213 LGRRQTKKLFREVLSN 228 (318)
T ss_pred cCHHHHHHHHHHHHhh
Confidence 7888888887776553
No 287
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=81.50 E-value=30 Score=31.16 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHcCC-------CcEEEEee----cCC--------CCCCCCCccchhHHHHHh-cCCCEEEcCCCCC
Q 027740 70 CASSVMVNSAEKVRLAGN-------PNVMVCER----GTM--------FGYNDLIVDPRNLEWMRE-ANCPVVADVTHSL 129 (219)
Q Consensus 70 ~t~~ei~~A~e~i~~~Gn-------~~i~L~~c----gs~--------~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~ 129 (219)
.+.-|..+|++.+...|- ++.++|.| |.. -+...--.|..+|..+++ .++||++|.-=+
T Consensus 121 PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIg- 199 (267)
T CHL00162 121 PDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIG- 199 (267)
T ss_pred CChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcC-
Confidence 377899999998877773 23333322 111 123333458888898888 889999873322
Q ss_pred CCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 130 QQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
- ++-+..|+.+|+||+++-+-..
T Consensus 200 ----------------t-----~sDa~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 200 ----------------T-----PSEASQAMELGASGVLLNTAVA 222 (267)
T ss_pred ----------------C-----HHHHHHHHHcCCCEEeecceee
Confidence 1 4556789999999999887744
No 288
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=81.46 E-value=12 Score=31.68 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=55.9
Q ss_pred HHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCC------CC---CCHHHHHHHHh-cCCeEEEeCCCCCCHHHH
Q 027740 7 ILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAF------LC---RQTDLLVAAAK-TGKIINIKKGQFCASSVM 75 (219)
Q Consensus 7 ~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~------~~---~n~~LL~~~a~-~gkPVilstG~~~t~~ei 75 (219)
.+.+.+++.+++++..+.+.+.+..+.+. +|++.+-+. .- ....+++++.+ .++||++.-|.. +.+++
T Consensus 93 ~~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~-~~~~v 171 (236)
T cd04730 93 EVVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIA-DGRGI 171 (236)
T ss_pred HHHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCC-CHHHH
Confidence 34556677899999988888888777776 888877331 11 23457777664 479999999988 77777
Q ss_pred HHHHHHHHHcCCCcEEE
Q 027740 76 VNSAEKVRLAGNPNVMV 92 (219)
Q Consensus 76 ~~A~e~i~~~Gn~~i~L 92 (219)
..+++ .|..-+++
T Consensus 172 ~~~l~----~GadgV~v 184 (236)
T cd04730 172 AAALA----LGADGVQM 184 (236)
T ss_pred HHHHH----cCCcEEEE
Confidence 76653 56544444
No 289
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=81.31 E-value=37 Score=31.32 Aligned_cols=92 Identities=12% Similarity=0.132 Sum_probs=53.9
Q ss_pred HHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCC
Q 027740 51 LLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHS 128 (219)
Q Consensus 51 LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn-~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs 128 (219)
+++.....+.+++++.|.. .+|++.....+.. |- .+++.+..-- ++.. .=+..|.++|+ +..|.++ .-..
T Consensus 74 fvrk~k~~~L~v~~SvG~t--~e~~~r~~~lv~a-~~~~d~i~~D~ah--g~s~--~~~~~i~~i~~~~p~~~vi-~GnV 145 (321)
T TIGR01306 74 FIKDMQERGLFASISVGVK--ACEYEFVTQLAEE-ALTPEYITIDIAH--GHSN--SVINMIKHIKTHLPDSFVI-AGNV 145 (321)
T ss_pred HHHhccccccEEEEEcCCC--HHHHHHHHHHHhc-CCCCCEEEEeCcc--CchH--HHHHHHHHHHHhCCCCEEE-EecC
Confidence 3444444567888888855 7777777666553 42 4565555311 1211 23456777777 6666334 1111
Q ss_pred CCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 129 LQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
.. ...++.++..||||+.+-.|
T Consensus 146 ----------------~t-----~e~a~~l~~aGad~I~V~~G 167 (321)
T TIGR01306 146 ----------------GT-----PEAVRELENAGADATKVGIG 167 (321)
T ss_pred ----------------CC-----HHHHHHHHHcCcCEEEECCC
Confidence 12 56788999999998765533
No 290
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=81.26 E-value=6.7 Score=37.63 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=62.3
Q ss_pred ccccccCCCCCC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCCCCcc--ch-h
Q 027740 36 ADIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYNDLIVD--PR-N 110 (219)
Q Consensus 36 vd~~kI~S~~~~-n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn-~~i~L~~cgs~~~~~~~~~n--l~-~ 110 (219)
..|++||-|.-+ +-..++.+....=||.+|-|..++++|+..-++.+--... -.+.|.-| ++... +. |- -
T Consensus 255 aH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGP~~~p~~l~~L~~~LnP~~epGRlTLI~R---mGa~k--V~~~LP~l 329 (443)
T TIGR01358 255 AHMLWIGERTRQLDGAHVEFLRGVRNPIGIKVGPSMTPDELLRLIERLNPENEPGRLTLISR---MGADK--IADKLPPL 329 (443)
T ss_pred ccccccccccCCCCchHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEec---cCchH--HHHhHHHH
Confidence 558899988776 6666777778888999999999999999999998842221 15888887 33332 21 22 2
Q ss_pred HHHHHhcCCCEEE--cCCCCC
Q 027740 111 LEWMREANCPVVA--DVTHSL 129 (219)
Q Consensus 111 i~~lk~~~~pV~~--ds~Hs~ 129 (219)
|...++.+.||+. ||=|.|
T Consensus 330 i~aV~~~G~~VvW~cDPMHGN 350 (443)
T TIGR01358 330 LRAVKAAGRRVVWVCDPMHGN 350 (443)
T ss_pred HHHHHHcCCceEEeecCCCCC
Confidence 2333447888877 555875
No 291
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=81.04 E-value=33 Score=30.02 Aligned_cols=117 Identities=19% Similarity=0.071 Sum_probs=68.4
Q ss_pred CHHHHHHHHhc--CCe--EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEE
Q 027740 48 QTDLLVAAAKT--GKI--INIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVA 123 (219)
Q Consensus 48 n~~LL~~~a~~--gkP--VilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ 123 (219)
..+.++.+.+. +.. +++..+.. ..++++.|. +.|..-+-++-..+. . ..-...+...|+.+..|.+
T Consensus 61 ~~e~i~~~~~~~~~~~~~~~~~~~~~-~~~~i~~a~----~~g~~~iri~~~~s~--~---~~~~~~i~~ak~~G~~v~~ 130 (263)
T cd07943 61 DEEYLEAAAEALKQAKLGVLLLPGIG-TVDDLKMAA----DLGVDVVRVATHCTE--A---DVSEQHIGAARKLGMDVVG 130 (263)
T ss_pred hHHHHHHHHHhccCCEEEEEecCCcc-CHHHHHHHH----HcCCCEEEEEechhh--H---HHHHHHHHHHHHCCCeEEE
Confidence 45666666442 222 23334444 677776664 456665655443221 1 1112344455556766655
Q ss_pred cCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 124 ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
....+- .-..+.+...+..+.++|++. | .++|..-+++|+++.++++.+|+
T Consensus 131 ~~~~~~---------------~~~~~~~~~~~~~~~~~G~d~--i--------~l~DT~G~~~P~~v~~lv~~l~~ 181 (263)
T cd07943 131 FLMMSH---------------MASPEELAEQAKLMESYGADC--V--------YVTDSAGAMLPDDVRERVRALRE 181 (263)
T ss_pred EEEecc---------------CCCHHHHHHHHHHHHHcCCCE--E--------EEcCCCCCcCHHHHHHHHHHHHH
Confidence 443221 012355667788889999983 2 15799999999999999999885
No 292
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=81.01 E-value=39 Score=29.87 Aligned_cols=117 Identities=10% Similarity=0.015 Sum_probs=66.0
Q ss_pred HHHHHHHHhcC----CeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEc
Q 027740 49 TDLLVAAAKTG----KIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVAD 124 (219)
Q Consensus 49 ~~LL~~~a~~g----kPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~d 124 (219)
.+.++.+.+.. +-..+.+......++++.+.+ .|-.-+.++.. ....+.-...+...|+.++.|.+.
T Consensus 58 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~----~gv~~iri~~~-----~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 58 DEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASG----SVVDMIRVAFH-----KHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred HHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhc----CCcCEEEEecc-----cccHHHHHHHHHHHHHCCCeEEEE
Confidence 45566665543 223334444336676666543 34443444321 111111123344445556777665
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 125 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 125 s~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
..++. .-..+++...++.+..+|++.+. ++|..-.++|+++.++++.+++
T Consensus 129 ~~~a~---------------~~~~~~~~~~~~~~~~~g~~~i~----------l~DT~G~~~P~~v~~lv~~l~~ 178 (266)
T cd07944 129 LMAIS---------------GYSDEELLELLELVNEIKPDVFY----------IVDSFGSMYPEDIKRIISLLRS 178 (266)
T ss_pred EEeec---------------CCCHHHHHHHHHHHHhCCCCEEE----------EecCCCCCCHHHHHHHHHHHHH
Confidence 44442 01235566777788889998432 4788889999999999998875
No 293
>PRK09389 (R)-citramalate synthase; Provisional
Probab=80.90 E-value=14 Score=35.76 Aligned_cols=100 Identities=17% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHHHHHhcCCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCC
Q 027740 51 LLVAAAKTGKIINIKKGQF--CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTH 127 (219)
Q Consensus 51 LL~~~a~~gkPVilstG~~--~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~H 127 (219)
.++++.+.|.-|.++--.+ .+++-+...++.+.+.|...|.||..+.. -+|.. + -+-+..+++ +++|+++ +.|
T Consensus 119 ~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~~-~-~~lv~~l~~~~~v~l~~-H~H 194 (488)
T PRK09389 119 AVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGI-LTPEK-T-YELFKRLSELVKGPVSI-HCH 194 (488)
T ss_pred HHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-cCHHH-H-HHHHHHHHhhcCCeEEE-Eec
Confidence 3456666787766654433 25666767777778889988888886553 23321 2 133566776 7899988 777
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCC
Q 027740 128 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 174 (219)
Q Consensus 128 s~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~ 174 (219)
-. .| +-..-+++|+.+||+ .||.-+.-
T Consensus 195 ND---------------~G---lAvANalaAv~aGa~--~Vd~Ti~G 221 (488)
T PRK09389 195 ND---------------FG---LAVANTLAALAAGAD--QVHVTING 221 (488)
T ss_pred CC---------------cc---HHHHHHHHHHHcCCC--EEEEEccc
Confidence 52 13 335567899999998 88876553
No 294
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=80.88 E-value=9.7 Score=31.69 Aligned_cols=70 Identities=13% Similarity=0.064 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc--CCeEEEeCCCCCCHHHHHH
Q 027740 6 KILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT--GKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~--gkPVilstG~~~t~~ei~~ 77 (219)
..+.++++++|++++-.+.+++++....+. +|++++-.....-..+++.+.+. +.|++-.-|. +.+.+..
T Consensus 87 ~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~a~GGI--~~~n~~~ 159 (190)
T cd00452 87 PEVVKAANRAGIPLLPGVATPTEIMQALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFMPTGGV--SLDNAAE 159 (190)
T ss_pred HHHHHHHHHcCCcEECCcCCHHHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEEEeCCC--CHHHHHH
Confidence 457788999999999999999998888777 99999865444467778877653 4777777775 4655443
No 295
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=80.81 E-value=41 Score=34.25 Aligned_cols=102 Identities=21% Similarity=0.252 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCCeEee--eCCcccHHHHhhh-ccccccCCCCCCC---HHHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTD--VHETVQCEEVGKV-ADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt--~~d~~~~~~l~~~-vd~~kI~S~~~~n---~~LL~~~a~~gkPVilstG~~~t~~ei~~ 77 (219)
.+..|.++++...+|++.- +.|+.|+.....+ .|++-+=.+-+.. ..|++.+.++|+-+++... +.+|++.
T Consensus 99 s~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh---~~~el~~ 175 (695)
T PRK13802 99 SLDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETH---TREEIER 175 (695)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHH
Confidence 3677888999999999983 6788888887777 8876655555542 5788888889999999987 8899998
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh
Q 027740 78 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 116 (219)
Q Consensus 78 A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~ 116 (219)
|++ .|.+=|-+=.| +.....+|+.....|..
T Consensus 176 a~~----~ga~iiGINnR----dL~tf~vd~~~t~~L~~ 206 (695)
T PRK13802 176 AIA----AGAKVIGINAR----NLKDLKVDVNKYNELAA 206 (695)
T ss_pred HHh----CCCCEEEEeCC----CCccceeCHHHHHHHHh
Confidence 876 45553444444 23445678887777765
No 296
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=80.73 E-value=30 Score=28.40 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCCeEeeeCCc---ccHHHHhhh-ccccccCCCCCC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHET---VQCEEVGKV-ADIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSA 79 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~---~~~~~l~~~-vd~~kI~S~~~~-n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~ 79 (219)
++.+++.++..+.++....+-- ..++.+.+. +|.+++...... ....++.+-+.+.-++++.+.. +..+...+.
T Consensus 46 ~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~ 124 (211)
T cd00429 46 PPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFHAEATDHLHRTIQLIKELGMKAGVALNPG-TPVEVLEPY 124 (211)
T ss_pred HHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEECccchhhHHHHHHHHHHCCCeEEEEecCC-CCHHHHHHH
Confidence 3455555544434432222222 235555566 788777655332 3456777777888899988766 444433332
Q ss_pred HHHHHcCCCcEEEEeecCCCCCCCCCcc---chhHHHHHh-c-----CCCEEEcCCCCCCCCCCCccCCCCccCCCCccc
Q 027740 80 EKVRLAGNPNVMVCERGTMFGYNDLIVD---PRNLEWMRE-A-----NCPVVADVTHSLQQPAGKKLDGGGVASGGLREL 150 (219)
Q Consensus 80 e~i~~~Gn~~i~L~~cgs~~~~~~~~~n---l~~i~~lk~-~-----~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~ 150 (219)
.. + .+.+++-+.. .+......+ +..+..+|+ . ++||.++ +|..
T Consensus 125 ---~~-~-~d~i~~~~~~-~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~--------------------GGI~-- 176 (211)
T cd00429 125 ---LD-E-VDLVLVMSVN-PGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVD--------------------GGIN-- 176 (211)
T ss_pred ---Hh-h-CCEEEEEEEC-CCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEE--------------------CCCC--
Confidence 21 2 3455554321 111111222 233445554 4 4888763 2432
Q ss_pred HHHHHHHHHHcCCcEEEEeeecC
Q 027740 151 IPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 151 ~~~~~~aAvalGA~GlvIEkH~t 173 (219)
..-...+...||+|+++=+-++
T Consensus 177 -~env~~~~~~gad~iivgsai~ 198 (211)
T cd00429 177 -LETIPLLAEAGADVLVAGSALF 198 (211)
T ss_pred -HHHHHHHHHcCCCEEEECHHHh
Confidence 3334567889999998866654
No 297
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=80.68 E-value=10 Score=34.97 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcC-CCeEe-eeCCcccHHHHhhh-ccccccC---CCCC-C-----------CHHHHHHHHh-cCCeEEEe
Q 027740 5 LKILEKVKIAYD-IPIVT-DVHETVQCEEVGKV-ADIIQIP---AFLC-R-----------QTDLLVAAAK-TGKIINIK 65 (219)
Q Consensus 5 l~~L~~~~~~~G-i~~~t-t~~d~~~~~~l~~~-vd~~kI~---S~~~-~-----------n~~LL~~~a~-~gkPVils 65 (219)
.+.++++++++. ++++. ++-+.+.+..+.+. +|++++| .+.+ + +++.+..+.+ .+.|||-+
T Consensus 128 ~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIAd 207 (326)
T PRK05458 128 INMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIAD 207 (326)
T ss_pred HHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEEe
Confidence 455777778885 99999 89999999999999 9999987 2221 1 1333666666 57999999
Q ss_pred CCCCCCHHHHHHHHH
Q 027740 66 KGQFCASSVMVNSAE 80 (219)
Q Consensus 66 tG~~~t~~ei~~A~e 80 (219)
-|.. +..++..|+.
T Consensus 208 GGI~-~~~Di~KaLa 221 (326)
T PRK05458 208 GGIR-THGDIAKSIR 221 (326)
T ss_pred CCCC-CHHHHHHHHH
Confidence 9999 9999988765
No 298
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=80.60 E-value=47 Score=30.53 Aligned_cols=115 Identities=20% Similarity=0.169 Sum_probs=70.7
Q ss_pred CCHHHHHHHHhcCCe----EEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE-eecCCCCCCCCCccchhHHHHHhcCCCE
Q 027740 47 RQTDLLVAAAKTGKI----INIKKGQFCASSVMVNSAEKVRLAGNPNVMVC-ERGTMFGYNDLIVDPRNLEWMREANCPV 121 (219)
Q Consensus 47 ~n~~LL~~~a~~gkP----VilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~-~cgs~~~~~~~~~nl~~i~~lk~~~~pV 121 (219)
.+.+.++++.+.-++ +++--|.. +.++++.|.+ .|..-+-+. ||. + .+.-...+...|+.++.|
T Consensus 62 ~~~e~i~~~~~~~~~~~~~~ll~pg~~-~~~dl~~a~~----~gvd~iri~~~~~-----e-~d~~~~~i~~ak~~G~~v 130 (333)
T TIGR03217 62 TDLEYIEAAADVVKRAKVAVLLLPGIG-TVHDLKAAYD----AGARTVRVATHCT-----E-ADVSEQHIGMARELGMDT 130 (333)
T ss_pred ChHHHHHHHHHhCCCCEEEEEeccCcc-CHHHHHHHHH----CCCCEEEEEeccc-----h-HHHHHHHHHHHHHcCCeE
Confidence 456677777664332 23334555 8888877754 465544433 331 1 122345666667666665
Q ss_pred EEcC--CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 122 VADV--THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 122 ~~ds--~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
.+.. +|.. ..+.+...+..+..+||+.+- +.|..-.+.|+++.++++.+|+
T Consensus 131 ~~~l~~s~~~-----------------~~e~l~~~a~~~~~~Ga~~i~----------i~DT~G~~~P~~v~~~v~~l~~ 183 (333)
T TIGR03217 131 VGFLMMSHMT-----------------PPEKLAEQAKLMESYGADCVY----------IVDSAGAMLPDDVRDRVRALKA 183 (333)
T ss_pred EEEEEcccCC-----------------CHHHHHHHHHHHHhcCCCEEE----------EccCCCCCCHHHHHHHHHHHHH
Confidence 4422 2321 234556677788899998321 4799999999999999999885
No 299
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=80.46 E-value=8.3 Score=37.09 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=57.2
Q ss_pred HHHHHHHHHhc-CCCeE-eeeCCcccHHHHhhh-ccccccCCC--------CC-----CCHHHHHHHHh----cCCeEEE
Q 027740 5 LKILEKVKIAY-DIPIV-TDVHETVQCEEVGKV-ADIIQIPAF--------LC-----RQTDLLVAAAK----TGKIINI 64 (219)
Q Consensus 5 l~~L~~~~~~~-Gi~~~-tt~~d~~~~~~l~~~-vd~~kI~S~--------~~-----~n~~LL~~~a~----~gkPVil 64 (219)
+..+++.++++ +++++ -.+.+.+++..+.+. +|++++|-. .. .+...+.++++ .+.|||.
T Consensus 257 l~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~via 336 (486)
T PRK05567 257 LDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIA 336 (486)
T ss_pred HHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEE
Confidence 55677777787 88855 699999999999999 999998622 11 23445544443 5899999
Q ss_pred eCCCCCCHHHHHHHHH
Q 027740 65 KKGQFCASSVMVNSAE 80 (219)
Q Consensus 65 stG~~~t~~ei~~A~e 80 (219)
+-|.. +..|+..|+.
T Consensus 337 dGGi~-~~~di~kAla 351 (486)
T PRK05567 337 DGGIR-YSGDIAKALA 351 (486)
T ss_pred cCCCC-CHHHHHHHHH
Confidence 99999 9999998865
No 300
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=80.46 E-value=43 Score=32.18 Aligned_cols=135 Identities=16% Similarity=0.093 Sum_probs=81.2
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 82 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i 82 (219)
-.+.+.+.|+++|+.++-. ..++...++ +|-+-+|..++.-....+.. ..++-|-+|+ . +++|+..|.+
T Consensus 339 ~a~~l~~~~~~~~~~liin----d~~~lA~~~~adGvHl~~~d~~~~~~r~~~-~~~~~iG~S~--h-~~~e~~~a~~-- 408 (502)
T PLN02898 339 EAKACLAICRSYGVPLLIN----DRVDVALACDADGVHLGQSDMPVRLARSLL-GPGKIIGVSC--K-TPEQAEQAWK-- 408 (502)
T ss_pred HHHHHHHHHHHhCCEEEEc----ChHHHHHhcCCCEEEeChHhcCHHHHHHhc-CCCCEEEEeC--C-CHHHHHHHhh--
Confidence 4567778899999988765 235555666 77777777665433322221 2345555665 4 8999887754
Q ss_pred HHcCCCcEEEEeecCCCCCC-CCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHH
Q 027740 83 RLAGNPNVMVCERGTMFGYN-DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIA 160 (219)
Q Consensus 83 ~~~Gn~~i~L~~cgs~~~~~-~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAva 160 (219)
.|...+.+-+.-.+..-+ ..-.++..+.++.+ +++||+.= ||.. ..-.....+
T Consensus 409 --~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~ai--------------------GGI~---~~~~~~~~~ 463 (502)
T PLN02898 409 --DGADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAI--------------------GGIS---ASNAASVME 463 (502)
T ss_pred --cCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEE--------------------CCCC---HHHHHHHHH
Confidence 576666654432110001 12346677777766 78998761 2422 233456778
Q ss_pred cCCc---EEEEeeecC
Q 027740 161 VGVD---GVFMEVHDD 173 (219)
Q Consensus 161 lGA~---GlvIEkH~t 173 (219)
.|++ |+.+-.-+.
T Consensus 464 ~G~~~~~gvav~~~i~ 479 (502)
T PLN02898 464 SGAPNLKGVAVVSALF 479 (502)
T ss_pred cCCCcCceEEEEeHHh
Confidence 8888 998887754
No 301
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=80.33 E-value=6.3 Score=38.06 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=62.4
Q ss_pred ccccccCCCCCC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCCCCcc--c-hh
Q 027740 36 ADIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYNDLIVD--P-RN 110 (219)
Q Consensus 36 vd~~kI~S~~~~-n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn-~~i~L~~cgs~~~~~~~~~n--l-~~ 110 (219)
..|++||-|.-+ +-..++.+....=||.+|-|..++++|+..-++.+--... -.+.|.-| |+... +. | .-
T Consensus 275 aH~lWIGeRTRqlDgAHVef~rgI~NPIGvKvGPs~~pdel~~L~~~LnP~~epGRlTLI~R---mGa~k--V~~~LP~L 349 (474)
T PLN02291 275 AHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPEELVKLIEILNPQNKPGRLTIIVR---MGAEK--LRVKLPHL 349 (474)
T ss_pred ccccccccccCCCCccHHHHHhcCCCCeeEEECCCCCHHHHHHHHHHhCCCCCCceEEEEec---cchHH--HHHHHHHH
Confidence 558899988776 6667777778888999999999999999999998832211 15888877 33332 21 2 22
Q ss_pred HHHHHhcCCCEEE--cCCCCC
Q 027740 111 LEWMREANCPVVA--DVTHSL 129 (219)
Q Consensus 111 i~~lk~~~~pV~~--ds~Hs~ 129 (219)
|...++.+.||+. ||=|.|
T Consensus 350 i~aV~~~G~~VvW~cDPMHGN 370 (474)
T PLN02291 350 IRAVRRAGQIVTWVSDPMHGN 370 (474)
T ss_pred HHHHHHcCCceEEeecCCCCC
Confidence 3333457888877 555875
No 302
>PRK09389 (R)-citramalate synthase; Provisional
Probab=79.98 E-value=33 Score=33.22 Aligned_cols=139 Identities=11% Similarity=0.116 Sum_probs=84.9
Q ss_pred HHhhh-ccccccCCCCCC--CHHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------C
Q 027740 31 EVGKV-ADIIQIPAFLCR--QTDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------G 100 (219)
Q Consensus 31 ~l~~~-vd~~kI~S~~~~--n~~LL~~~a~~gk-PVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~------~ 100 (219)
.|.++ ++.+-+|+.-.. ..+.++++.+.+. +.+..-... ..++++.+++ .|.+.+.++-..|.. +
T Consensus 32 ~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~~~~~~i~a~~r~-~~~di~~a~~----~g~~~v~i~~~~Sd~h~~~~l~ 106 (488)
T PRK09389 32 KLDELGVDVIEAGSAITSEGEREAIKAVTDEGLNAEICSFARA-VKVDIDAALE----CDVDSVHLVVPTSDLHIEYKLK 106 (488)
T ss_pred HHHHcCCCEEEEeCCcCCHHHHHHHHHHHhcCCCcEEEeeccc-CHHHHHHHHh----CCcCEEEEEEccCHHHHHHHhC
Confidence 44555 777777765433 3667778876554 333333333 5677666554 577777777766531 1
Q ss_pred CCC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC
Q 027740 101 YND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 177 (219)
Q Consensus 101 ~~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a 177 (219)
... +.++ ...+...|+.++.|.|++..+. --..+++..++.++..+||+-+ .
T Consensus 107 ~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~---------------r~~~~~l~~~~~~~~~~Ga~~i----------~ 161 (488)
T PRK09389 107 KTREEVLETAVEAVEYAKDHGLIVELSGEDAS---------------RADLDFLKELYKAGIEAGADRI----------C 161 (488)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCC---------------CCCHHHHHHHHHHHHhCCCCEE----------E
Confidence 111 1111 1223334446777777554331 0124667778889999999832 3
Q ss_pred CCCCCCCCChHHHHHHHHHHHH
Q 027740 178 PVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 178 ~~D~~~sl~p~el~~lv~~ir~ 199 (219)
++|---.++|.++.++++.+++
T Consensus 162 l~DTvG~~~P~~~~~lv~~l~~ 183 (488)
T PRK09389 162 FCDTVGILTPEKTYELFKRLSE 183 (488)
T ss_pred EecCCCCcCHHHHHHHHHHHHh
Confidence 5898899999999999988875
No 303
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=79.91 E-value=63 Score=34.78 Aligned_cols=111 Identities=17% Similarity=0.184 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcc
Q 027740 71 ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRE 149 (219)
Q Consensus 71 t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~ 149 (219)
+++-+.+.++.+.+.|...|.|+.-.... .| ..+ ..-+..+|+ +++||.+ ++|.. .|.
T Consensus 687 ~l~y~~~~ak~l~~~Gad~I~ikDt~Gll-~P-~~~-~~Lv~~lk~~~~~pi~~-H~Hdt---------------~Gl-- 745 (1143)
T TIGR01235 687 DLKYYTNLAVELEKAGAHILGIKDMAGLL-KP-AAA-KLLIKALREKTDLPIHF-HTHDT---------------SGI-- 745 (1143)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCcCCc-CH-HHH-HHHHHHHHHhcCCeEEE-EECCC---------------CCc--
Confidence 68888888888889999877777755432 12 111 244566787 8999999 88874 242
Q ss_pred cHHHHHHHHHHcCCcEEEEeeecCCCCC-------------CC--CCCCCCChHHHHHHHHHHHHHHHHhC
Q 027740 150 LIPCIARTAIAVGVDGVFMEVHDDPLNA-------------PV--DGPTQWPLRNLEELLEELVAIAKVSK 205 (219)
Q Consensus 150 ~~~~~~~aAvalGA~GlvIEkH~t~d~a-------------~~--D~~~sl~p~el~~lv~~ir~i~~~lg 205 (219)
-....++|+.+||+ +|+.-..+=-. +. +...-++++.|.++-+.+++++....
T Consensus 746 -a~an~laA~eaGad--~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~tgidl~~l~~is~~~~~vr~~y~ 813 (1143)
T TIGR01235 746 -AVASMLAAVEAGVD--VVDVAVDSMSGLTSQPSLGAIVAALEGSERDPGLNVAWIRELSAYWEAVRNLYA 813 (1143)
T ss_pred -HHHHHHHHHHhCCC--EEEecchhhcCCCCCHhHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHHhh
Confidence 14557799999999 88875543211 11 33446777777766666655555443
No 304
>PRK06498 isocitrate lyase; Provisional
Probab=79.91 E-value=9 Score=37.44 Aligned_cols=73 Identities=16% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC-CCCCC-CCCCCCCChHHHHHHHHH
Q 027740 119 CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD-PLNAP-VDGPTQWPLRNLEELLEE 196 (219)
Q Consensus 119 ~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t-~d~a~-~D~~~sl~p~el~~lv~~ 196 (219)
+||+.|.|-.- |...-+....+.-+.+||.|+.||-... |.|-- -+++.-++.+++-.=++.
T Consensus 179 iPIIADaDtGf----------------G~~~nv~r~vk~~ieAGAAgIhIEDQv~~~KkCGHl~GK~lVp~ee~i~KI~A 242 (531)
T PRK06498 179 VPIIADIDAGF----------------GNEEATYLLAKKMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKIRA 242 (531)
T ss_pred cceEEEcCCCC----------------CcHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCCCCEeccHHHHHHHHHH
Confidence 59999988653 4333445566778999999999998765 45543 377778888888777777
Q ss_pred HHHHHHHhCCC
Q 027740 197 LVAIAKVSKGK 207 (219)
Q Consensus 197 ir~i~~~lg~~ 207 (219)
.|.....+|..
T Consensus 243 Ar~A~d~~G~~ 253 (531)
T PRK06498 243 VRYAFLELGVD 253 (531)
T ss_pred HHHHHHhcCCC
Confidence 77777777754
No 305
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=79.53 E-value=38 Score=28.91 Aligned_cols=132 Identities=14% Similarity=0.033 Sum_probs=78.9
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVR 83 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~ 83 (219)
...+.+.|+++|++++-.= .++...++ +|-+-+|..++......+ +-..++-|.+|+ . +.+|+..|.
T Consensus 52 a~~l~~~~~~~~~~liInd----~~~lA~~~~adGVHlg~~d~~~~~~r~-~~~~~~~iG~S~--H-~~~e~~~A~---- 119 (211)
T PRK03512 52 VVAAIALGRRYQARLFIND----YWRLAIKHQAYGVHLGQEDLETADLNA-IRAAGLRLGVST--H-DDMEIDVAL---- 119 (211)
T ss_pred HHHHHHHHHHhCCeEEEeC----HHHHHHHcCCCEEEcChHhCCHHHHHH-hcCCCCEEEEeC--C-CHHHHHHHh----
Confidence 4566788899999988762 46666666 788888888775433322 212345566666 4 888887664
Q ss_pred HcCCCcEEEEeecCCCCCC---CCCccchhHHHHHh--cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 84 LAGNPNVMVCERGTMFGYN---DLIVDPRNLEWMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 84 ~~Gn~~i~L~~cgs~~~~~---~~~~nl~~i~~lk~--~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
+.|-..+.+-+.-.+- +. .....+..+..+.+ .++||..= ||.. ..-....
T Consensus 120 ~~gaDYi~lgpvf~T~-tK~~~~~~~G~~~l~~~~~~~~~~PV~Ai--------------------GGI~---~~ni~~l 175 (211)
T PRK03512 120 AARPSYIALGHVFPTQ-TKQMPSAPQGLAQLARHVERLADYPTVAI--------------------GGIS---LERAPAV 175 (211)
T ss_pred hcCCCEEEECCccCCC-CCCCCCCCCCHHHHHHHHHhcCCCCEEEE--------------------CCCC---HHHHHHH
Confidence 3577777776652221 11 11234444555544 47898751 3421 2223355
Q ss_pred HHcCCcEEEEeeec
Q 027740 159 IAVGVDGVFMEVHD 172 (219)
Q Consensus 159 valGA~GlvIEkH~ 172 (219)
.+.||+|+-+-.-+
T Consensus 176 ~~~Ga~GiAvisai 189 (211)
T PRK03512 176 LATGVGSIAVVSAI 189 (211)
T ss_pred HHcCCCEEEEhhHh
Confidence 68899998876654
No 306
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=79.38 E-value=24 Score=33.81 Aligned_cols=80 Identities=14% Similarity=0.053 Sum_probs=54.2
Q ss_pred CCHHHHHHHHhcC-CeEEEeC-----CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCC
Q 027740 47 RQTDLLVAAAKTG-KIINIKK-----GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANC 119 (219)
Q Consensus 47 ~n~~LL~~~a~~g-kPVilst-----G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~ 119 (219)
++....+++.-.| +|+.+.+ ...+++++++.+++ ..+.+.+++++-..++..+...-|+..|..+.+ +++
T Consensus 160 th~S~~kAi~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt---~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI 236 (444)
T TIGR03531 160 DQKSCIKAISTAGFEPRVIETVLDGDELTTDVEDIERAIE---EIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDI 236 (444)
T ss_pred ChHHHHHHHHHcCCeEEEeeeeecCcCCCcCHHHHHHHHH---hccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCC
Confidence 4777778777777 6888874 34458889888876 333345666664433211112348889988866 999
Q ss_pred CEEEcCCCCC
Q 027740 120 PVVADVTHSL 129 (219)
Q Consensus 120 pV~~ds~Hs~ 129 (219)
|++.|.-|..
T Consensus 237 ~lIvDaAyg~ 246 (444)
T TIGR03531 237 PHIVNNAYGL 246 (444)
T ss_pred EEEEECcCcC
Confidence 9999999985
No 307
>PF01474 DAHP_synth_2: Class-II DAHP synthetase family; InterPro: IPR002480 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family (2.5.1.54 from EC) catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I (see IPR006218 from INTERPRO) includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process; PDB: 3NUD_A 3KGF_A 2W19_A 3NUE_B 3PFP_A 2B7O_B 3RZI_A 3NV8_B 2W1A_A.
Probab=79.37 E-value=5.1 Score=38.39 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=49.7
Q ss_pred cccccCCCCCC-CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEeecCCCCCCCCCccchhHHHH
Q 027740 37 DIIQIPAFLCR-QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGN-PNVMVCERGTMFGYNDLIVDPRNLEWM 114 (219)
Q Consensus 37 d~~kI~S~~~~-n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn-~~i~L~~cgs~~~~~~~~~nl~~i~~l 114 (219)
.+++||-|.-+ .-..++.+....=||.+|-|.+++++|+..-++.+--... -.+.|.-| |+... +. ..+|.+
T Consensus 259 H~~WIGeRTRq~dgAHve~~~gi~NPigvKvGP~~~~~~l~~l~~~LnP~~~pGRltlI~R---mGa~~--v~-~~LP~l 332 (439)
T PF01474_consen 259 HFLWIGERTRQLDGAHVEFLRGIANPIGVKVGPSMTPEELVELCDRLNPDNEPGRLTLITR---MGADK--VR-ERLPPL 332 (439)
T ss_dssp SEEEE-TTT--TTSHHHHHHHHB-S-EEEEE-TT--HHHHHHHHHHHSTT--TTSEEEEE------TTT--HH-HHHHHH
T ss_pred ceeeecccccCCchhHHHHHhhccCccceeeCCCCCHHHHHHHHHHhCCCCCCCeEEEEec---CCcHH--HH-HHhHHH
Confidence 37899988766 5667888888888999999999999999999998732111 16888887 34432 22 333433
Q ss_pred ----HhcCCCEEE--cCCCCC
Q 027740 115 ----REANCPVVA--DVTHSL 129 (219)
Q Consensus 115 ----k~~~~pV~~--ds~Hs~ 129 (219)
++.+.||+. ||=|.|
T Consensus 333 i~aV~~~g~~vvW~cDPMHGN 353 (439)
T PF01474_consen 333 IEAVQAAGHPVVWSCDPMHGN 353 (439)
T ss_dssp HHHHHTTT---EEEE-TSTTS
T ss_pred HHHHHHCCCceEEeccCCCCC
Confidence 447888776 666875
No 308
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=79.32 E-value=34 Score=32.50 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=97.3
Q ss_pred HHHhhh-ccccccCCCCCCC--HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC------C
Q 027740 30 EEVGKV-ADIIQIPAFLCRQ--TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF------G 100 (219)
Q Consensus 30 ~~l~~~-vd~~kI~S~~~~n--~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~------~ 100 (219)
..|.++ +|.+-+|.....+ ..+.++++. ..+..+++=...-...+...++.+...|...+++.-++|.+ .
T Consensus 31 ~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~ 109 (409)
T COG0119 31 KALDDLGVDYIEAGFPVASPGDFEFVRAIAE-KAGLFICALIAALARAIKRDIEALLEAGVDRIHIFIATSDLHLRYKLK 109 (409)
T ss_pred HHHHHcCCCEEEEeCCcCChhhHHHHHHHHH-hcCcccchhhhhhHHhHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhC
Confidence 345666 8888888887775 556777774 22223333333345677778889999999999999988842 1
Q ss_pred CCC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC
Q 027740 101 YND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA 177 (219)
Q Consensus 101 ~~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a 177 (219)
... +.++ ..++...|+.++++.+++.|+. .-..+++..+..++.++||+ .| +
T Consensus 110 ~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~---------------rt~~~~l~~~~~~~~~~ga~--~i--------~ 164 (409)
T COG0119 110 KTREEVLERAVDAVEYARDHGLEVRFSAEDAT---------------RTDPEFLAEVVKAAIEAGAD--RI--------N 164 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEeeccc---------------cCCHHHHHHHHHHHHHcCCc--EE--------E
Confidence 111 1111 1234444556799988777773 12356777788888899986 22 2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHH
Q 027740 178 PVDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 178 ~~D~~~sl~p~el~~lv~~ir~i 200 (219)
++|---..+|.++.++++.+++.
T Consensus 165 l~DTvG~~~P~~~~~~i~~l~~~ 187 (409)
T COG0119 165 LPDTVGVATPNEVADIIEALKAN 187 (409)
T ss_pred ECCCcCccCHHHHHHHHHHHHHh
Confidence 57888889999999999988764
No 309
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=79.32 E-value=16 Score=34.09 Aligned_cols=87 Identities=13% Similarity=0.058 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCCeEeeeC--C-----cc----cHHH-------Hhhh-ccccccCCCC-C-----------------
Q 027740 4 GLKILEKVKIAYDIPIVTDVH--E-----TV----QCEE-------VGKV-ADIIQIPAFL-C----------------- 46 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~--d-----~~----~~~~-------l~~~-vd~~kI~S~~-~----------------- 46 (219)
-|..+.+-|+++|+|++...+ . +. +.+. .+++ .|++|+.--. .
T Consensus 180 ~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~ 259 (348)
T PRK09250 180 EISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYS 259 (348)
T ss_pred HHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhHHHhhcccccccccc
Confidence 467788899999999997322 1 11 1232 3356 8899987431 1
Q ss_pred -----CCHHHHHH-HHhc---CCeEEEeCCCCCCHHHHHHHHHHH---HHcCCCcE
Q 027740 47 -----RQTDLLVA-AAKT---GKIINIKKGQFCASSVMVNSAEKV---RLAGNPNV 90 (219)
Q Consensus 47 -----~n~~LL~~-~a~~---gkPVilstG~~~t~~ei~~A~e~i---~~~Gn~~i 90 (219)
.+.++++. +... ..||+++=|...+.+|+++.++.. ...|..-+
T Consensus 260 ~~~~~~~~~~~~~~V~ac~ag~vpVviAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv 315 (348)
T PRK09250 260 KLTSDHPIDLVRYQVANCYMGRRGLINSGGASKGEDDLLDAVRTAVINKRAGGMGL 315 (348)
T ss_pred cccccchHHHHHHHHHhhccCCceEEEeCCCCCCHHHHHHHHHHHHHhhhcCCcch
Confidence 12233333 3333 689999999998888888888877 66665433
No 310
>PLN02229 alpha-galactosidase
Probab=79.11 E-value=2.5 Score=40.36 Aligned_cols=72 Identities=15% Similarity=0.123 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHhcCCCeEe---------------eeCCcccHHHHhhh-ccccccCCCCCC-------CHHHHHHHHhcC
Q 027740 3 EGLKILEKVKIAYDIPIVT---------------DVHETVQCEEVGKV-ADIIQIPAFLCR-------QTDLLVAAAKTG 59 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~t---------------t~~d~~~~~~l~~~-vd~~kI~S~~~~-------n~~LL~~~a~~g 59 (219)
.|++.|.+|.+++|+.|-- --++..+++..++- ||++|+-..... -..+-+++.++|
T Consensus 128 ~G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~g~e~~DA~~fA~WGVDylK~D~C~~~~~~~~~~y~~m~~AL~~tG 207 (427)
T PLN02229 128 SGIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGSLFHEVDDADIFASWGVDYLKYDNCYNLGIKPIERYPPMRDALNATG 207 (427)
T ss_pred CcHHHHHHHHHHCCCceEEeccCCCcccCCCCCCccHHHHHHHHHHHcCCCEEEecCCCCCCcchhHHHHHHHHHHHhhC
Confidence 4899999999999999853 12444556667777 999999765332 135788899999
Q ss_pred CeEEEeC---CCCCCHHHH
Q 027740 60 KIINIKK---GQFCASSVM 75 (219)
Q Consensus 60 kPVilst---G~~~t~~ei 75 (219)
+||++|- |.. .+..|
T Consensus 208 RpI~~SlC~WG~~-~p~~w 225 (427)
T PLN02229 208 RSIFYSLCEWGVD-DPALW 225 (427)
T ss_pred CCcEEEecCCCCC-CHHHH
Confidence 9999995 554 45444
No 311
>PLN02692 alpha-galactosidase
Probab=79.07 E-value=2.2 Score=40.65 Aligned_cols=64 Identities=13% Similarity=0.071 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhcCCCeEe---------eeCCc-------ccHHHHhhh-ccccccCCCCCC-------CHHHHHHHHhc
Q 027740 3 EGLKILEKVKIAYDIPIVT---------DVHET-------VQCEEVGKV-ADIIQIPAFLCR-------QTDLLVAAAKT 58 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~t---------t~~d~-------~~~~~l~~~-vd~~kI~S~~~~-------n~~LL~~~a~~ 58 (219)
.|++.|.+|.+++|+.|-- ....| .+++..++- +|++|+-..... -..+-+++.++
T Consensus 121 ~G~k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~t 200 (412)
T PLN02692 121 SGIKALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDGSKPTVRYPVMTRALMKA 200 (412)
T ss_pred CcHHHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHHHHHHHhcCCCEEeccccCCCCcchhHHHHHHHHHHHHh
Confidence 4899999999999998842 11122 234455666 999998765321 13478889999
Q ss_pred CCeEEEeC
Q 027740 59 GKIINIKK 66 (219)
Q Consensus 59 gkPVilst 66 (219)
|+||++|-
T Consensus 201 GRpI~~Sl 208 (412)
T PLN02692 201 GRPIFFSL 208 (412)
T ss_pred CCCeEEEe
Confidence 99999984
No 312
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=78.94 E-value=19 Score=35.31 Aligned_cols=99 Identities=9% Similarity=0.100 Sum_probs=64.8
Q ss_pred HHHHHHhcCCeEEEeCC-----CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCC-EEE
Q 027740 51 LLVAAAKTGKIINIKKG-----QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCP-VVA 123 (219)
Q Consensus 51 LL~~~a~~gkPVilstG-----~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~p-V~~ 123 (219)
.++++-+.|.-|.++.- ...+++.+.+.++.+...|...+.||..+.. -.|. ++ .+.+..+++ +..+ +++
T Consensus 127 ~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~-~~P~-~v-~~li~~l~~~~~~~~i~v 203 (526)
T TIGR00977 127 TVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLCDTNGG-TLPH-EI-SEITTKVKRSLKQPQLGI 203 (526)
T ss_pred HHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEecCCCC-cCHH-HH-HHHHHHHHHhCCCCEEEE
Confidence 35566667887765332 2236888888888888889999999875542 2232 22 245667776 6554 777
Q ss_pred cCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 124 DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 124 ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
+.|-. .| +...-+++|+..||+ .||.-+.
T Consensus 204 -H~HND---------------~G---lAvANslaAv~AGA~--~Vd~Tin 232 (526)
T TIGR00977 204 -HAHND---------------SG---TAVANSLLAVEAGAT--MVQGTIN 232 (526)
T ss_pred -EECCC---------------CC---hHHHHHHHHHHhCCC--EEEEecc
Confidence 66642 13 334558899999998 8887655
No 313
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=78.77 E-value=41 Score=28.73 Aligned_cols=140 Identities=17% Similarity=0.109 Sum_probs=89.9
Q ss_pred HHHHHHhcCCCeEeeeCCcccHHHHhhh-----ccccccCCCCCCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHHHH
Q 027740 8 LEKVKIAYDIPIVTDVHETVQCEEVGKV-----ADIIQIPAFLCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 8 L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-----vd~~kI~S~~~~n~~LL~~~a~-~gkPVilstG~~~t~~ei~~A~e~ 81 (219)
|.++-++.++..+-...+++++..+.+. +.+++|.-.+-.-.+.|+.+.+ .+.++++=-|.-.+.+++..|++
T Consensus 3 ~~~~l~~~~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~- 81 (206)
T PRK09140 3 LMQPFTKLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLAD- 81 (206)
T ss_pred hhhHHHhCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHH-
Confidence 4455566777777777777776665542 6778887666666667777765 45679999999988898887754
Q ss_pred HHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHc
Q 027740 82 VRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAV 161 (219)
Q Consensus 82 i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAval 161 (219)
.|-+-+ |.+ . .|...+...+..+.+++. ..|+ +.-...|..+
T Consensus 82 ---aGA~fi---vsp----~----~~~~v~~~~~~~~~~~~~-G~~t-----------------------~~E~~~A~~~ 123 (206)
T PRK09140 82 ---AGGRLI---VTP----N----TDPEVIRRAVALGMVVMP-GVAT-----------------------PTEAFAALRA 123 (206)
T ss_pred ---cCCCEE---ECC----C----CCHHHHHHHHHCCCcEEc-ccCC-----------------------HHHHHHHHHc
Confidence 565433 221 1 354555555557888876 5676 3445788899
Q ss_pred CCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHH
Q 027740 162 GVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEEL 197 (219)
Q Consensus 162 GA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~i 197 (219)
|+| +|=. .|. ..+.|+.++.+.+-+
T Consensus 124 Gad--~vk~--Fpa-------~~~G~~~l~~l~~~~ 148 (206)
T PRK09140 124 GAQ--ALKL--FPA-------SQLGPAGIKALRAVL 148 (206)
T ss_pred CCC--EEEE--CCC-------CCCCHHHHHHHHhhc
Confidence 999 3332 221 235677777665544
No 314
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=78.76 E-value=20 Score=30.25 Aligned_cols=72 Identities=22% Similarity=0.187 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccH
Q 027740 73 SVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELI 151 (219)
Q Consensus 73 ~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~ 151 (219)
.+-...++.+.+.|-..+++..+...+. ....|...+..+++ .++||.++. |.+.
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~~~--~~~~~~~~i~~i~~~~~~pv~~~G--------------------gI~~-- 84 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGAKG--GEPVNLELIEEIVKAVGIPVQVGG--------------------GIRS-- 84 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcccc--CCCCCHHHHHHHHHhcCCCEEEeC--------------------CcCC--
Confidence 4555666677788999999998765432 12357888888887 789998842 3222
Q ss_pred HHHHHHHHHcCCcEEEE
Q 027740 152 PCIARTAIAVGVDGVFM 168 (219)
Q Consensus 152 ~~~~~aAvalGA~GlvI 168 (219)
...+......|||.++|
T Consensus 85 ~e~~~~~~~~Gad~vvi 101 (234)
T cd04732 85 LEDIERLLDLGVSRVII 101 (234)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 34456777899997664
No 315
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=78.72 E-value=25 Score=29.11 Aligned_cols=90 Identities=7% Similarity=0.031 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCCeEeeeCC--ccc-HHHH---hhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEe-CCC-----CC-
Q 027740 5 LKILEKVKIAYDIPIVTDVHE--TVQ-CEEV---GKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIK-KGQ-----FC- 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d--~~~-~~~l---~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVils-tG~-----~~- 70 (219)
++-+.++++++|+.+.....+ +.. .+.+ ... +|.+-+.+.+..+.+.++.+.+.|.|+++= +.. ..
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~v~ 97 (266)
T cd06282 18 VQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDAERVPYVLAYNDPQPGRPSVS 97 (266)
T ss_pred HHHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhhCCCCEEEEeccCCCCCCEEe
Confidence 456778889999987765433 222 1222 222 777777666555556788888889997543 221 00
Q ss_pred --CHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 71 --ASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 71 --t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
..+....+++++.+.|..++.++.
T Consensus 98 ~d~~~~g~~~~~~l~~~g~~~i~~i~ 123 (266)
T cd06282 98 VDNRAAARDVAQALAALGHRRIAMLA 123 (266)
T ss_pred eCcHHHHHHHHHHHHHcCcccEEEec
Confidence 235567788888889999998885
No 316
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=78.68 E-value=37 Score=28.17 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=57.7
Q ss_pred eEeeeCCcccHHHHhh----hccccccCCCCCC--CHHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcE
Q 027740 19 IVTDVHETVQCEEVGK----VADIIQIPAFLCR--QTDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEKVRLAGNPNV 90 (219)
Q Consensus 19 ~~tt~~d~~~~~~l~~----~vd~~kI~S~~~~--n~~LL~~~a~~--gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i 90 (219)
+.-+..++++...+.+ .+++++||..... -.+.++.+.+. ++++++-+-.. ++..+ .++.+...|- +.
T Consensus 4 ~alD~~~~~~a~~~~~~l~~~v~~iev~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~-d~~~~--~~~~~~~~Ga-d~ 79 (206)
T TIGR03128 4 LALDLLDIEEALELAEKVADYVDIIEIGTPLIKNEGIEAVKEMKEAFPDRKVLADLKTM-DAGEY--EAEQAFAAGA-DI 79 (206)
T ss_pred EEecCCCHHHHHHHHHHcccCeeEEEeCCHHHHHhCHHHHHHHHHHCCCCEEEEEEeec-cchHH--HHHHHHHcCC-CE
Confidence 3345555555554443 2789999844433 26778888775 66888766544 55532 3444556676 57
Q ss_pred EEEeecCCCCCCCCCccchhHHHHHhcCCCEEEc
Q 027740 91 MVCERGTMFGYNDLIVDPRNLEWMREANCPVVAD 124 (219)
Q Consensus 91 ~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~d 124 (219)
+.+|+.+. .. ...+.+...++.+++++.+
T Consensus 80 i~vh~~~~----~~-~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 80 VTVLGVAD----DA-TIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred EEEeccCC----HH-HHHHHHHHHHHcCCEEEEE
Confidence 77997542 10 1134555556689999875
No 317
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=78.61 E-value=35 Score=30.83 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=53.2
Q ss_pred ccccccCCCCCCCHHHHH----HHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLLV----AAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL~----~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|.+.++ ++-+.+.||||..... +.. + + +.+. + ...+
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~-~~~-------~-------------~----g~~~--~-~~~~ 66 (284)
T PRK12737 15 AEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPG-TFS-------Y-------------A----GTDY--I-VAIA 66 (284)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcc-HHh-------h-------------C----CHHH--H-HHHH
Confidence 455778999999976554 4555788888876654 211 0 0 1110 0 1223
Q ss_pred HHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 112 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 112 ~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
..+.+ +.+||.+-=||.. . ......|+.+|.+.+||.
T Consensus 67 ~~~a~~~~VPValHLDH~~----------------~-----~e~i~~ai~~GftSVMiD 104 (284)
T PRK12737 67 EVAARKYNIPLALHLDHHE----------------D-----LDDIKKKVRAGIRSVMID 104 (284)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCeEEec
Confidence 33444 7889999888872 2 456678899999877664
No 318
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=78.36 E-value=18 Score=31.05 Aligned_cols=72 Identities=19% Similarity=0.171 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHH
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIP 152 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~ 152 (219)
+....++.+...|...+++..+.... +. ...|+..+..+++ .++||.++ +|.+. .
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~-~~-~~~~~~~i~~i~~~~~~pv~~~--------------------GGI~s--~ 83 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASS-EG-RETMLDVVERVAEEVFIPLTVG--------------------GGIRS--L 83 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccc-cc-CcccHHHHHHHHHhCCCCEEEe--------------------CCCCC--H
Confidence 55556666778899999999987541 11 2358888888888 78999874 23322 2
Q ss_pred HHHHHHHHcCCcEEEEe
Q 027740 153 CIARTAIAVGVDGVFME 169 (219)
Q Consensus 153 ~~~~aAvalGA~GlvIE 169 (219)
.-+......|++++++=
T Consensus 84 ~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 84 EDARRLLRAGADKVSIN 100 (243)
T ss_pred HHHHHHHHcCCceEEEC
Confidence 33445566799987765
No 319
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=78.36 E-value=9.3 Score=34.19 Aligned_cols=100 Identities=8% Similarity=0.032 Sum_probs=60.5
Q ss_pred HHHHHHHcCCCcEEEEeecCCC----CC--CC-CCcc--chhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCc
Q 027740 78 SAEKVRLAGNPNVMVCERGTMF----GY--ND-LIVD--PRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLR 148 (219)
Q Consensus 78 A~e~i~~~Gn~~i~L~~cgs~~----~~--~~-~~~n--l~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~ 148 (219)
.++...+.|.+.|.++-.+|.. +. .. +.++ ...+...|+.++.|.+...+. ..|- .-..
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~-~~~~-----------r~~~ 146 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDW-SNGM-----------RDSP 146 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeC-CCCC-----------cCCH
Confidence 4555556688888888776631 11 11 1111 011233344567776655542 1110 0124
Q ss_pred ccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 149 ELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 149 ~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
+++..++..+..+|++-+ .++|.--.++|.++.++++.+++
T Consensus 147 ~~~~~~~~~~~~~G~~~i----------~l~DT~G~~~P~~v~~l~~~l~~ 187 (280)
T cd07945 147 DYVFQLVDFLSDLPIKRI----------MLPDTLGILSPFETYTYISDMVK 187 (280)
T ss_pred HHHHHHHHHHHHcCCCEE----------EecCCCCCCCHHHHHHHHHHHHh
Confidence 567778888899999832 25799999999999999999875
No 320
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=78.29 E-value=12 Score=35.51 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhcc--ccccCCCCCCCHHHHHHHHh-cCCeEEEeCCCCCCHHHHHHHH
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVAD--IIQIPAFLCRQTDLLVAAAK-TGKIINIKKGQFCASSVMVNSA 79 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd--~~kI~S~~~~n~~LL~~~a~-~gkPVilstG~~~t~~ei~~A~ 79 (219)
+-.+..+++++..++|.+---+|++-+....+.+. -.-|++.+-.|+.=+-++|+ .+.||+++... ++++..+-.
T Consensus 85 ~fa~~vk~V~~a~~~PLIL~~~D~evl~aale~~~~~kpLL~aAt~eNyk~m~~lA~~y~~pl~v~sp~--Dln~lk~Ln 162 (386)
T PF03599_consen 85 EFAKAVKKVAEAVDVPLILCGCDPEVLKAALEACAGKKPLLYAATEENYKAMAALAKEYGHPLIVSSPI--DLNLLKQLN 162 (386)
T ss_dssp HHHHHHHHHHHC-SSEEEEESSHHHHHHHHHHHTTTS--EEEEEBTTTHHHHHHHHHHCT-EEEEE-SS--CHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHhCcCCcEEeEcCHHHHHHHHHHHHHcCCeEEEEecc--cHHHHHHHH
Confidence 34566788888899999987778888888777643 45578888889876666665 68899998764 599999999
Q ss_pred HHHHHcCCCcEEEEeecCC
Q 027740 80 EKVRLAGNPNVMVCERGTM 98 (219)
Q Consensus 80 e~i~~~Gn~~i~L~~cgs~ 98 (219)
+.+.+.|.++|+| .-|+.
T Consensus 163 ~~l~~~Gv~dIVl-Dpgt~ 180 (386)
T PF03599_consen 163 IKLTELGVKDIVL-DPGTR 180 (386)
T ss_dssp HHHHTTT-GGEEE-E---S
T ss_pred HHHHhcCcccEEe-cCCcc
Confidence 9999999988854 55553
No 321
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=78.00 E-value=37 Score=27.92 Aligned_cols=141 Identities=17% Similarity=0.147 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHH---Hhhh-ccccccCCCCCCC-HHHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEE---VGKV-ADIIQIPAFLCRQ-TDLLVAAAKTGKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~---l~~~-vd~~kI~S~~~~n-~~LL~~~a~~gkPVilstG~~~t~~ei~~ 77 (219)
.+++.+++.++....++..-++-....++ +.+. +|.+++....-.. ...++.+-+.+..+++..... |..|...
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~-t~~e~~~ 121 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPA-TPLEFLE 121 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCC-CCHHHHH
Confidence 35677788877666665332332222343 4445 7887777654322 345566666787666655555 5555444
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCccch---hHHHHHh-c-----CCCEEEcCCCCCCCCCCCccCCCCccCCCCc
Q 027740 78 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPR---NLEWMRE-A-----NCPVVADVTHSLQQPAGKKLDGGGVASGGLR 148 (219)
Q Consensus 78 A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~---~i~~lk~-~-----~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~ 148 (219)
++ . .+. +.+++-+.. .+......+.. .+..+++ . ++||.++ +|.+
T Consensus 122 ~~---~-~~~-d~i~~~~~~-~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~--------------------GGI~ 175 (210)
T TIGR01163 122 YV---L-PDV-DLVLLMSVN-PGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD--------------------GGVN 175 (210)
T ss_pred HH---H-hhC-CEEEEEEEc-CCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE--------------------CCcC
Confidence 33 1 233 444443221 01111122333 3444443 2 2677663 2432
Q ss_pred ccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 149 ELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 149 ~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
..-...+++.||+|+++=+.++
T Consensus 176 ---~env~~l~~~gad~iivgsai~ 197 (210)
T TIGR01163 176 ---DDNARELAEAGADILVAGSAIF 197 (210)
T ss_pred ---HHHHHHHHHcCCCEEEEChHHh
Confidence 2334456799999988876654
No 322
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=77.99 E-value=37 Score=30.29 Aligned_cols=46 Identities=30% Similarity=0.494 Sum_probs=34.9
Q ss_pred ccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 106 VDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 106 ~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
.|...|..+++ .++||+.|.--. . +.-+..|..+||+|+++-.-.+
T Consensus 162 ~~~~~I~~I~e~~~vpVI~egGI~-----------------t-----peda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 162 LNPYNLRIIIERADVPVIVDAGIG-----------------T-----PSDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred CCHHHHHHHHHhCCCcEEEeCCCC-----------------C-----HHHHHHHHHcCCCEEEEChHhc
Confidence 46777888888 889998863321 1 5667789999999999988765
No 323
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=77.72 E-value=25 Score=30.81 Aligned_cols=90 Identities=12% Similarity=-0.015 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCCeEeeeC--Cccc-HHH---Hhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCC-----C--CC
Q 027740 5 LKILEKVKIAYDIPIVTDVH--ETVQ-CEE---VGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKG-----Q--FC 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~--d~~~-~~~---l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG-----~--~~ 70 (219)
+.-+.+++++.|..++.... +.+. .+. +.+. +|.+-+-+....+.+.++.+.+.+.|+++=.. . +.
T Consensus 83 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V 162 (342)
T PRK10014 83 TAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFASRASYLDDVDTV 162 (342)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEEecCCCCCCCCEE
Confidence 34567888999977664332 3221 222 2222 67666554444456788888888999986321 0 11
Q ss_pred ---CHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 71 ---ASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 71 ---t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
...-...+++++.+.|..+|.++.
T Consensus 163 ~~D~~~~~~~a~~~L~~~G~~~I~~i~ 189 (342)
T PRK10014 163 RPDNMQAAQLLTEHLIRNGHQRIAWLG 189 (342)
T ss_pred EeCCHHHHHHHHHHHHHCCCCEEEEEc
Confidence 234457788899999999988774
No 324
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=77.65 E-value=13 Score=33.52 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=53.0
Q ss_pred ccccccCCCCCCCHHH----HHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDL----LVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~L----L~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|++. ++++-+.+.||||..... +..-+ ..+.+ ...+
T Consensus 14 ~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~-~~~~~--~~~~~-------------------------~~~~ 65 (287)
T PF01116_consen 14 EGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPS-EVKYM--GLEYL-------------------------AAMV 65 (287)
T ss_dssp HHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHH-HHHHH--HHHHH-------------------------HHHH
T ss_pred HCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchh-hhhhh--hHHHH-------------------------HHHH
Confidence 3457788899998754 455556788999887655 33322 01111 1233
Q ss_pred HHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 112 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 112 ~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
..+.+ +++||.+--||.. . ......|+..|.+.+||.
T Consensus 66 ~~~a~~~~vPValHLDH~~----------------~-----~e~i~~ai~~GftSVM~D 103 (287)
T PF01116_consen 66 KAAAEEASVPVALHLDHGK----------------D-----FEDIKRAIDAGFTSVMID 103 (287)
T ss_dssp HHHHHHSTSEEEEEEEEE-----------------S-----HHHHHHHHHHTSSEEEEE
T ss_pred HHHHHHcCCCEEeecccCC----------------C-----HHHHHHHHHhCccccccc
Confidence 44455 7899999888873 2 567788999999988775
No 325
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=77.56 E-value=4.8 Score=36.24 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=60.8
Q ss_pred HHHHHHHHhcCCCeEe----eeCCcc-cHHHHhhh-----ccccccCCC------CCCC-HHHHHHHHhcCCeEEEeCCC
Q 027740 6 KILEKVKIAYDIPIVT----DVHETV-QCEEVGKV-----ADIIQIPAF------LCRQ-TDLLVAAAKTGKIINIKKGQ 68 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~t----t~~d~~-~~~~l~~~-----vd~~kI~S~------~~~n-~~LL~~~a~~gkPVilstG~ 68 (219)
+++.+++.++.=.|+. .|.+++ .++++++. +.-+|+-.. +-.. .++.+++.+.|.||.+-||.
T Consensus 87 d~~a~~~~~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 87 DDLAALAAEYPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred HHHHHHHhhCCcceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 4677777777766655 333322 34444432 334455222 1122 78999999999999999999
Q ss_pred CCCHH-------HHHHHHHHHHHcCCCcEEEEeecCCCCCC
Q 027740 69 FCASS-------VMVNSAEKVRLAGNPNVMVCERGTMFGYN 102 (219)
Q Consensus 69 ~~t~~-------ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~ 102 (219)
..... .-...-+.+....+=+|+|.|+|-.|++-
T Consensus 167 ~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~ 207 (293)
T COG2159 167 GPGGAGLEKGHSDPLYLDDVARKFPELKIVLGHMGEDYPWE 207 (293)
T ss_pred CCCCcccccCCCCchHHHHHHHHCCCCcEEEEecCCCCchh
Confidence 64431 22334445566678899999999765554
No 326
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=77.54 E-value=32 Score=28.74 Aligned_cols=88 Identities=8% Similarity=-0.073 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCeEeeeCC--cc-cHH---HHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEe---------CCC
Q 027740 5 LKILEKVKIAYDIPIVTDVHE--TV-QCE---EVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIK---------KGQ 68 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d--~~-~~~---~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVils---------tG~ 68 (219)
+..+.+.++++|..++....+ +. +.+ .+... +|.+-|.+.. .+.+.++.+-+.+.||++= -+.
T Consensus 18 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~-~~~~~~~~~~~~~iPvv~~~~~~~~~~~V~~ 96 (265)
T cd06285 18 YEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLILGDAR-SDDHFLDELTRRGVPFVLVLRHAGTSPAVTG 96 (265)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC-CChHHHHHHHHcCCCEEEEccCCCCCCEEEe
Confidence 566788899999887653332 21 122 22233 7766665544 3445678887889998762 222
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 69 FCASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 69 ~~t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
. .-+-...+++++...|..++.++.
T Consensus 97 d-~~~ag~~a~~~L~~~g~~~i~~i~ 121 (265)
T cd06285 97 D-DVLGGRLATRHLLDLGHRRIAVLA 121 (265)
T ss_pred C-cHHHHHHHHHHHHHCCCccEEEEe
Confidence 2 345566788899999999998875
No 327
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=77.34 E-value=20 Score=33.56 Aligned_cols=85 Identities=16% Similarity=0.118 Sum_probs=51.6
Q ss_pred CCeEEEeC-CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC-C-----------CCCccchhHHHHHh-cCCCEEEc
Q 027740 59 GKIINIKK-GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGY-N-----------DLIVDPRNLEWMRE-ANCPVVAD 124 (219)
Q Consensus 59 gkPVilst-G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~-~-----------~~~~nl~~i~~lk~-~~~pV~~d 124 (219)
.+||++|- |.. +.++|..+++.+.+.|.. .+=+-.++ |. . +.+.=...+..+++ .++||.+=
T Consensus 99 ~~p~i~si~g~~-~~~~~~~~a~~~~~~g~d-~ielN~sc--P~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vK 174 (420)
T PRK08318 99 DRALIASIMVEC-NEEEWKEIAPLVEETGAD-GIELNFGC--PHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVK 174 (420)
T ss_pred CceEEEEeccCC-CHHHHHHHHHHHHhcCCC-EEEEeCCC--CCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEE
Confidence 58999994 443 689999999999887743 33332221 11 0 00011122445566 67898772
Q ss_pred --CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 125 --VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 125 --s~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
++.+ + +..++.++...||+|+++
T Consensus 175 l~p~~~--------------------~-~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 175 LTPNIT--------------------D-IREPARAAKRGGADAVSL 199 (420)
T ss_pred cCCCcc--------------------c-HHHHHHHHHHCCCCEEEE
Confidence 1111 1 357788899999999884
No 328
>PLN02858 fructose-bisphosphate aldolase
Probab=77.28 E-value=1e+02 Score=33.84 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=79.7
Q ss_pred CCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 027740 16 DIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCER 95 (219)
Q Consensus 16 Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~c 95 (219)
|++++|=+=..-+-+.|.+.+..+.=++| .+-.++|+.+-+.+.-|.== ... +++.+...++.-.+.+ ..++|...
T Consensus 1071 glpvVtk~G~~G~~~tL~~~~~~l~~~~~-v~~~~~l~~A~~~~yav~af-n~~-n~e~~~avi~aAe~~~-sPvIl~~~ 1146 (1378)
T PLN02858 1071 GVPYIVFPGNVGDSTALAEVVKSWARPAR-SSTKELLLNAEKGGYAVGAF-NVY-NLEGIEAVVAAAEAEK-SPAILQVH 1146 (1378)
T ss_pred CCcEEEeCCcCCChHHHHHHHHHhcCcCC-ccHHHHHHHHHHCCcEEEEE-EeC-CHHHHHHHHHHHHHhC-CCEEEECC
Confidence 78888888888888888888888888888 56677777766555444322 222 4555555555444443 34666554
Q ss_pred cCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 96 GTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 96 gs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
-....|....+ ...+..+.+ +.+||.+-=||.. . ....+.|+.+|.+-+||.
T Consensus 1147 ~~~~~~~~~~~-~~~~~~~a~~~~vpV~lHLDHg~----------------~-----~~~i~~ai~~Gf~SVM~D 1199 (1378)
T PLN02858 1147 PGALKQGGIPL-VSCCIAAAEQASVPITVHFDHGT----------------S-----KHELLEALELGFDSVMVD 1199 (1378)
T ss_pred ccHHhhcCHHH-HHHHHHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHhCCCEEEEe
Confidence 33222221111 122233344 7899999888973 2 566789999999877775
No 329
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=77.12 E-value=48 Score=31.50 Aligned_cols=126 Identities=14% Similarity=0.135 Sum_probs=74.5
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCC
Q 027740 50 DLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHS 128 (219)
Q Consensus 50 ~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs 128 (219)
.-.+.+++.++||+|.+= +++-+..|.+.+.++- .+ | |+.. .=|+.-+..|.- +++|++. ++.
T Consensus 150 ~ave~v~~~~~pv~l~s~---dpevmkaaLev~~dqk--Pl-l------YaAt--e~n~~e~~klav~y~vplvl-~a~- 213 (467)
T COG1456 150 EAVEKVAEAGLPVILCSF---DPEVMKAALEVVKDQK--PL-L------YAAT--EDNWKEFAKLAVEYKVPLVL-SAF- 213 (467)
T ss_pred HHHHHHHhcCCcEEEEeC---CHHHHHHHHHHhhccC--ce-e------eecc--cccHHHHHHHHhhcCCcEEE-ecc-
Confidence 456667777788887753 6777777777775431 11 1 2111 236666666655 8999988 332
Q ss_pred CCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCC-CCCCCCCCCCChHHHHHHHHHHHHHHHHhCCC
Q 027740 129 LQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPL-NAPVDGPTQWPLRNLEELLEELVAIAKVSKGK 207 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d-~a~~D~~~sl~p~el~~lv~~ir~i~~~lg~~ 207 (219)
+.-+-+..++....++|.+-++++-|-.|- +.+.| -|..++. ||+..-.-+.+
T Consensus 214 -----------------~dl~~lk~la~~~~~~Gi~divLdPgT~p~~egl~~--------T~d~~v~-iRr~aIe~~d~ 267 (467)
T COG1456 214 -----------------NDLDDLKNLAVTYAQAGIKDIVLDPGTYPGGEGLKD--------TFDNFVM-IRRAAIEGFDK 267 (467)
T ss_pred -----------------CCHHHHHHHHHHHHHcCCceEEecCCcccCccchhH--------HHHHHHH-HHHHHhhccCc
Confidence 122334667888899999999999886664 33333 2333332 45544333333
Q ss_pred -ccccccCCCC
Q 027740 208 -QRMNIDLTPF 217 (219)
Q Consensus 208 -~~~~~~~~~~ 217 (219)
-.++|=-+||
T Consensus 268 ~~~yPim~~p~ 278 (467)
T COG1456 268 DFAYPIMALPF 278 (467)
T ss_pred cccceeeecch
Confidence 4566665655
No 330
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=76.71 E-value=14 Score=33.77 Aligned_cols=82 Identities=18% Similarity=0.308 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcC-CCeEe-eeCCcccHHHHhhh-ccccccC--CC-CCC----------CHHHHHHH----HhcCCeEEE
Q 027740 5 LKILEKVKIAYD-IPIVT-DVHETVQCEEVGKV-ADIIQIP--AF-LCR----------QTDLLVAA----AKTGKIINI 64 (219)
Q Consensus 5 l~~L~~~~~~~G-i~~~t-t~~d~~~~~~l~~~-vd~~kI~--S~-~~~----------n~~LL~~~----a~~gkPVil 64 (219)
++.++++.+... ++++. ++.+.+.+..+.+. +|+++++ ++ .++ +..++..+ ...+.|||-
T Consensus 123 ~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVIA 202 (325)
T cd00381 123 IEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVIA 202 (325)
T ss_pred HHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEEe
Confidence 445556655543 88875 89999999999998 9999983 21 111 22333333 234799998
Q ss_pred eCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 027740 65 KKGQFCASSVMVNSAEKVRLAGNPNVM 91 (219)
Q Consensus 65 stG~~~t~~ei~~A~e~i~~~Gn~~i~ 91 (219)
.=|.. +..++..|+. .|..-++
T Consensus 203 ~GGI~-~~~di~kAla----~GA~~Vm 224 (325)
T cd00381 203 DGGIR-TSGDIVKALA----AGADAVM 224 (325)
T ss_pred cCCCC-CHHHHHHHHH----cCCCEEE
Confidence 88888 9999998865 4655343
No 331
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=76.69 E-value=12 Score=36.46 Aligned_cols=74 Identities=14% Similarity=0.200 Sum_probs=55.8
Q ss_pred HHHHHHHHhc-CCCeEe-eeCCcccHHHHhhh-ccccccC--CC--------------CCCCHHHHHHHHh-cCCeEEEe
Q 027740 6 KILEKVKIAY-DIPIVT-DVHETVQCEEVGKV-ADIIQIP--AF--------------LCRQTDLLVAAAK-TGKIINIK 65 (219)
Q Consensus 6 ~~L~~~~~~~-Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~--S~--------------~~~n~~LL~~~a~-~gkPVils 65 (219)
..+++..+.+ ++.++. .+-..++...+.+. +|++++| ++ ..+...++.++++ .+.|||..
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIad 357 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIAD 357 (505)
T ss_pred HHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEe
Confidence 5566666667 688865 89999999999999 9999885 22 1123334555554 58999999
Q ss_pred CCCCCCHHHHHHHHH
Q 027740 66 KGQFCASSVMVNSAE 80 (219)
Q Consensus 66 tG~~~t~~ei~~A~e 80 (219)
-|.. +..++..|+.
T Consensus 358 GGI~-~~~di~kAla 371 (505)
T PLN02274 358 GGIS-NSGHIVKALT 371 (505)
T ss_pred CCCC-CHHHHHHHHH
Confidence 9999 9999998865
No 332
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=76.69 E-value=22 Score=30.79 Aligned_cols=94 Identities=5% Similarity=-0.015 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCCeEee---e---CCc----------------ccHHHHhhh-ccccccCCCCCC-------------
Q 027740 4 GLKILEKVKIAYDIPIVTD---V---HET----------------VQCEEVGKV-ADIIQIPAFLCR------------- 47 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt---~---~d~----------------~~~~~l~~~-vd~~kI~S~~~~------------- 47 (219)
.++.+++.++++||.+.+- . +++ ..++...++ ++.+.++++...
T Consensus 58 ~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~ 137 (283)
T PRK13209 58 QRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFI 137 (283)
T ss_pred HHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHH
Confidence 4678899999999998542 1 111 123444555 777777665311
Q ss_pred -C-HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 027740 48 -Q-TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 97 (219)
Q Consensus 48 -n-~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs 97 (219)
+ ..+.+.+.+.|..+.+.+.....+.....+++.+.+.+.+++-++.-..
T Consensus 138 ~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~~~~ll~~v~~~~lgl~~D~~ 189 (283)
T PRK13209 138 DGLKESVELASRASVTLAFEIMDTPFMNSISKALGYAHYLNSPWFQLYPDIG 189 (283)
T ss_pred HHHHHHHHHHHHhCCEEEEeecCCcccCCHHHHHHHHHHhCCCccceEeccc
Confidence 1 2355666667888888875443344555666666666777777776654
No 333
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=76.67 E-value=8.5 Score=34.83 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCCeEeee-----------------CCccc-HHHHhhh-ccccccCCCCC--------CCHHHHHHHHh
Q 027740 5 LKILEKVKIAYDIPIVTDV-----------------HETVQ-CEEVGKV-ADIIQIPAFLC--------RQTDLLVAAAK 57 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~-----------------~d~~~-~~~l~~~-vd~~kI~S~~~--------~n~~LL~~~a~ 57 (219)
-+...++|+.+|+.+=.|+ -+|++ .+|+.+. +|++.|+=+++ -|+++|+++.+
T Consensus 117 T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~ 196 (283)
T PRK07998 117 TKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAE 196 (283)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHh
Confidence 3567788899998872221 23333 3445556 88888876542 26788888877
Q ss_pred c-CCeEEEeCCCCCCHHHHHHHH
Q 027740 58 T-GKIINIKKGQFCASSVMVNSA 79 (219)
Q Consensus 58 ~-gkPVilstG~~~t~~ei~~A~ 79 (219)
. +.|++|-=|.+.+-+++..|+
T Consensus 197 ~~~vPLVlHGgSG~~~e~~~~ai 219 (283)
T PRK07998 197 VSPVPLVIHGGSGIPPEILRSFV 219 (283)
T ss_pred hCCCCEEEeCCCCCCHHHHHHHH
Confidence 4 788888888886667766554
No 334
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.65 E-value=41 Score=32.77 Aligned_cols=116 Identities=19% Similarity=0.158 Sum_probs=68.6
Q ss_pred ccHHHHhhh-ccccccCCCCCCC---HHHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEE-Eeec----
Q 027740 27 VQCEEVGKV-ADIIQIPAFLCRQ---TDLLVAAAKT-GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMV-CERG---- 96 (219)
Q Consensus 27 ~~~~~l~~~-vd~~kI~S~~~~n---~~LL~~~a~~-gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L-~~cg---- 96 (219)
+-++.|.+. +|++.|.+..-.+ .+.++++.+. +.++.|.-|.-.|.+..+.+++ .|..-|.+ .|.|
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~----aGAd~I~vg~g~Gs~c~ 320 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAE----AGADFVKVGIGGGSICI 320 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHH----cCCCEEEECCCCCcCcc
Confidence 445556665 8888887554443 5667777663 5568999998888888887765 46543333 1222
Q ss_pred CC----CCCCCCCccchhHHHHHh--------cC--CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 027740 97 TM----FGYNDLIVDPRNLEWMRE--------AN--CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 162 (219)
Q Consensus 97 s~----~~~~~~~~nl~~i~~lk~--------~~--~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalG 162 (219)
+. .+.| -+.++....+ ++ +||+.|.--- .+| .+ .-|.|+|
T Consensus 321 tr~~~~~g~~----~~~ai~~~~~a~~~~~~~~g~~~~viadgGir---------------~~g------di-~KAla~G 374 (502)
T PRK07107 321 TREQKGIGRG----QATALIEVAKARDEYFEETGVYIPICSDGGIV---------------YDY------HM-TLALAMG 374 (502)
T ss_pred cccccCCCcc----HHHHHHHHHHHHHHHHhhcCCcceEEEcCCCC---------------chh------HH-HHHHHcC
Confidence 22 1222 2345544332 25 8998873211 112 33 3578899
Q ss_pred CcEEEEeeec
Q 027740 163 VDGVFMEVHD 172 (219)
Q Consensus 163 A~GlvIEkH~ 172 (219)
||.+||=+=|
T Consensus 375 A~~vm~G~~~ 384 (502)
T PRK07107 375 ADFIMLGRYF 384 (502)
T ss_pred CCeeeeChhh
Confidence 9999886544
No 335
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=76.37 E-value=45 Score=32.97 Aligned_cols=147 Identities=8% Similarity=-0.008 Sum_probs=88.2
Q ss_pred HHHhhh-ccccccCCCCC---CCHHHHHHHHhcCC----eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC--
Q 027740 30 EEVGKV-ADIIQIPAFLC---RQTDLLVAAAKTGK----IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-- 99 (219)
Q Consensus 30 ~~l~~~-vd~~kI~S~~~---~n~~LL~~~a~~gk----PVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-- 99 (219)
+.|.++ ++.+-+| |-. .....++++.+.+. +.+..-+.. --.+++.|++.....+++.|.+.-.+|..
T Consensus 55 ~~L~~~Gvd~IE~G-fp~~s~~D~e~v~~i~~~~l~~~~~~i~al~~~-~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~ 132 (564)
T TIGR00970 55 DLLVRIGFKEIEVG-FPSASQTDFDFVREIIEQGAIPDDVTIQVLTQS-REELIERTFEALSGAKRATVHFYNATSILFR 132 (564)
T ss_pred HHHHHcCCCEEEEe-CCCCCHHHHHHHHHHHHhcCCCCCcEEEEEcCC-chhhHHHHHHHhcCCCCCEEEEEEcCCHHHH
Confidence 355666 7777776 322 23556677766542 233333333 34568999998877777789998887742
Q ss_pred ----CCCC-CCcc--chhHHHHHhcCC----------CEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 027740 100 ----GYND-LIVD--PRNLEWMREANC----------PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 162 (219)
Q Consensus 100 ----~~~~-~~~n--l~~i~~lk~~~~----------pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalG 162 (219)
+-.. +.++ ..++..+|+.+. -|-|++-|.. -...+++..++.++..+|
T Consensus 133 ~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~---------------r~d~~~l~~~~~~a~~ag 197 (564)
T TIGR00970 133 EVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFS---------------DTELEFAKEVCEAVKEVW 197 (564)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCC---------------CCCHHHHHHHHHHHHHhC
Confidence 1111 1111 112223343222 2456555552 134678888899999998
Q ss_pred CcE--EEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 163 VDG--VFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 163 A~G--lvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
++| ...+. +++|---.++|+++.++++.+++
T Consensus 198 ~~~~~~~~~i------~l~DTvG~a~P~~~~~~i~~l~~ 230 (564)
T TIGR00970 198 APTPERPIIF------NLPATVEMTTPNVYADSIEYFST 230 (564)
T ss_pred CCccCCeeEE------EeccccCccCHHHHHHHHHHHHH
Confidence 742 11222 57899999999999999998875
No 336
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=76.05 E-value=21 Score=28.10 Aligned_cols=74 Identities=12% Similarity=0.081 Sum_probs=47.8
Q ss_pred HHHHHHHHhc-CCCeEeeeCCcccHHH--Hhhh-ccccccCCCCCCC---------HHHHHHH-HhcCCeEEEeCCCCCC
Q 027740 6 KILEKVKIAY-DIPIVTDVHETVQCEE--VGKV-ADIIQIPAFLCRQ---------TDLLVAA-AKTGKIINIKKGQFCA 71 (219)
Q Consensus 6 ~~L~~~~~~~-Gi~~~tt~~d~~~~~~--l~~~-vd~~kI~S~~~~n---------~~LL~~~-a~~gkPVilstG~~~t 71 (219)
+.+.+..+.+ ++++...+......+. +.+. ++++.+..+.... ...+..+ ...++||+..-|.. +
T Consensus 103 ~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~-~ 181 (200)
T cd04722 103 ELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGIN-D 181 (200)
T ss_pred HHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCC-C
Confidence 4455555555 8888887765554443 4566 8888887665432 1333332 34678999999988 7
Q ss_pred HHHHHHHHH
Q 027740 72 SSVMVNSAE 80 (219)
Q Consensus 72 ~~ei~~A~e 80 (219)
.+++..+++
T Consensus 182 ~~~~~~~~~ 190 (200)
T cd04722 182 PEDAAEALA 190 (200)
T ss_pred HHHHHHHHH
Confidence 788776655
No 337
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=76.04 E-value=46 Score=30.88 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=34.2
Q ss_pred ccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeec
Q 027740 106 VDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 106 ~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~ 172 (219)
.|...|..+.+ .++||++|.-=+. ++-+..|+.+||||+.+-+-.
T Consensus 236 ~~p~~i~~~~e~~~vpVivdAGIg~----------------------~sda~~AmelGadgVL~nSaI 281 (326)
T PRK11840 236 QNPYTIRLIVEGATVPVLVDAGVGT----------------------ASDAAVAMELGCDGVLMNTAI 281 (326)
T ss_pred CCHHHHHHHHHcCCCcEEEeCCCCC----------------------HHHHHHHHHcCCCEEEEccee
Confidence 37778888777 7899998633321 455778999999999998774
No 338
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=76.00 E-value=17 Score=31.07 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHH
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIP 152 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~ 152 (219)
+..+.++...+.|-..+++.+....+ ....-|...|..+.+ +++|+.++ +|.++ .
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~--~~~~~~~~~i~~i~~~~~~~l~v~--------------------GGi~~--~ 88 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAF--EGERKNAEAIEKIIEAVGVPVQLG--------------------GGIRS--A 88 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhh--cCCcccHHHHHHHHHHcCCcEEEc--------------------CCcCC--H
Confidence 34445555667898889998887542 112246677777766 78899873 24433 2
Q ss_pred HHHHHHHHcCCcEEEEee
Q 027740 153 CIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 153 ~~~~aAvalGA~GlvIEk 170 (219)
.-+..+..+||+++++-.
T Consensus 89 ~~~~~~~~~Ga~~v~iGs 106 (241)
T PRK13585 89 EDAASLLDLGVDRVILGT 106 (241)
T ss_pred HHHHHHHHcCCCEEEECh
Confidence 335677789999887744
No 339
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=75.79 E-value=22 Score=30.78 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHhc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchh-HHHHHhcCCC
Q 027740 43 AFLCRQTDLLVAAAKT-GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRN-LEWMREANCP 120 (219)
Q Consensus 43 S~~~~n~~LL~~~a~~-gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~-i~~lk~~~~p 120 (219)
...-.|+++++++.+. +.||+.+-|.. +++++..+.+. .|..-+++ |+.+... .+++.. ...|++++++
T Consensus 180 ~~~g~d~~~i~~~~~~~~ipvia~GGv~-s~~d~~~~~~~---~G~~gviv---g~al~~~--~~~~~~~~~~~~~~~~~ 250 (253)
T PRK02083 180 TKNGYDLELTRAVSDAVNVPVIASGGAG-NLEHFVEAFTE---GGADAALA---ASIFHFG--EITIGELKAYLAEQGIP 250 (253)
T ss_pred CCCCcCHHHHHHHHhhCCCCEEEECCCC-CHHHHHHHHHh---CCccEEeE---hHHHHcC--CCCHHHHHHHHHHCCCc
Confidence 3344589999999874 79999999999 99999876543 45543433 2222111 234444 4556667777
Q ss_pred E
Q 027740 121 V 121 (219)
Q Consensus 121 V 121 (219)
|
T Consensus 251 ~ 251 (253)
T PRK02083 251 V 251 (253)
T ss_pred c
Confidence 6
No 340
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.78 E-value=25 Score=31.85 Aligned_cols=66 Identities=15% Similarity=0.200 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCE
Q 027740 45 LCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPV 121 (219)
Q Consensus 45 ~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV 121 (219)
++.|.+-+.++.+.|--+|.=-.| +++++..+++.+++. ++++.+.=.|. +|+.+++.+.++++-+
T Consensus 202 Ev~tleea~eA~~~GaD~I~LDn~--~~e~l~~av~~~~~~-~~~i~leAsGG--------It~~ni~~ya~tGvD~ 267 (288)
T PRK07428 202 ETETLEQVQEALEYGADIIMLDNM--PVDLMQQAVQLIRQQ-NPRVKIEASGN--------ITLETIRAVAETGVDY 267 (288)
T ss_pred ECCCHHHHHHHHHcCCCEEEECCC--CHHHHHHHHHHHHhc-CCCeEEEEECC--------CCHHHHHHHHHcCCCE
Confidence 444555555555555544433333 699999999988754 44565555543 6788888887766543
No 341
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=75.67 E-value=19 Score=34.22 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=40.6
Q ss_pred HhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCC
Q 027740 56 AKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHS 128 (219)
Q Consensus 56 a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs 128 (219)
.+.|.-+.+-... .++++++.++. .|..++++|.-++ ..-..+|+..|..+.+ .+++|+.|++.+
T Consensus 122 ~~~Gi~v~~vd~~-~d~~~l~~~I~-----~~Tk~I~~e~pgn--P~~~v~Di~~I~~iA~~~gi~livD~T~~ 187 (432)
T PRK06702 122 RKLGIDVTFFNPN-LTADEIVALAN-----DKTKLVYAESLGN--PAMNVLNFKEFSDAAKELEVPFIVDNTLA 187 (432)
T ss_pred HHCCCEEEEECCC-CCHHHHHHhCC-----cCCeEEEEEcCCC--ccccccCHHHHHHHHHHcCCEEEEECCCC
Confidence 4555444333332 25666665542 3567888775332 1124568999988877 899999999875
No 342
>PRK15452 putative protease; Provisional
Probab=75.43 E-value=16 Score=35.02 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHhcCCCeEee---eCCcccHHHHhhhcc---ccccCCCCCCCHHHHHHHHhc--CCeEEEeCCCCCCHHH
Q 027740 3 EGLKILEKVKIAYDIPIVTD---VHETVQCEEVGKVAD---IIQIPAFLCRQTDLLVAAAKT--GKIINIKKGQFCASSV 74 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt---~~d~~~~~~l~~~vd---~~kI~S~~~~n~~LL~~~a~~--gkPVilstG~~~t~~e 74 (219)
+-|+...++|++.|+.+.-+ .....+++.+.++++ -+.+-+.-+.|.-++..+.+. +.||.+|+.+..+=.+
T Consensus 46 edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~d~G~l~~~ke~~p~l~ih~stqlni~N~~ 125 (443)
T PRK15452 46 ENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMSDPGLIMMVREHFPEMPIHLSVQANAVNWA 125 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEcCHHHHHHHHHhCCCCeEEEEecccCCCHH
Confidence 34777888999999998776 344455655555533 334566778899988888875 7899999988744333
Q ss_pred HHHHHHHHHHcCCCcE
Q 027740 75 MVNSAEKVRLAGNPNV 90 (219)
Q Consensus 75 i~~A~e~i~~~Gn~~i 90 (219)
+++.....|-..+
T Consensus 126 ---a~~f~~~lG~~rv 138 (443)
T PRK15452 126 ---TVKFWQQMGLTRV 138 (443)
T ss_pred ---HHHHHHHCCCcEE
Confidence 4444555555444
No 343
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=75.41 E-value=60 Score=28.99 Aligned_cols=111 Identities=23% Similarity=0.350 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-CC--------------------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-GK-------------------- 60 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-gk-------------------- 60 (219)
+.++.+.+++.-||+.. -+-+.++++.+-.. .|-+-|.|.-+.|.+|+..+|.. |-
T Consensus 63 ~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~ 142 (256)
T COG0107 63 LDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADKVSINSAAVKDPELITEAADRFGSQCIVVAIDAKRVPDGENGWY 142 (256)
T ss_pred HHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhcChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcE
Confidence 77899999999999876 68888888888888 99999999999999999999873 21
Q ss_pred eEEEeCCCC---CCHHHHHHHHHHHHHcCCCcEEEEee---cCCCCCCCCCccchhHHHHHh-cCCCEEE
Q 027740 61 IINIKKGQF---CASSVMVNSAEKVRLAGNPNVMVCER---GTMFGYNDLIVDPRNLEWMRE-ANCPVVA 123 (219)
Q Consensus 61 PVilstG~~---~t~~ei~~A~e~i~~~Gn~~i~L~~c---gs~~~~~~~~~nl~~i~~lk~-~~~pV~~ 123 (219)
-|...+|-- .+.-||... +.+.|.-.|.|--= |+.-+| |+.-+...++ -++||+.
T Consensus 143 ~v~~~gGr~~t~~d~~~Wa~~---~e~~GAGEIlLtsmD~DGtk~Gy-----Dl~l~~~v~~~v~iPvIA 204 (256)
T COG0107 143 EVFTHGGREDTGLDAVEWAKE---VEELGAGEILLTSMDRDGTKAGY-----DLELTRAVREAVNIPVIA 204 (256)
T ss_pred EEEecCCCcCCCcCHHHHHHH---HHHcCCceEEEeeecccccccCc-----CHHHHHHHHHhCCCCEEe
Confidence 233333322 233444443 45567777755321 222233 6666677777 7999986
No 344
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=75.30 E-value=33 Score=31.71 Aligned_cols=111 Identities=17% Similarity=0.178 Sum_probs=62.4
Q ss_pred ccccccCCCCCCCHHHHH----HHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccc-hh
Q 027740 36 ADIIQIPAFLCRQTDLLV----AAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP-RN 110 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL~----~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl-~~ 110 (219)
-.-|-||++++.|.+.++ ++-+.+.||||....+ +. .+ + +.+.. .++ +.
T Consensus 21 ~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~-~~-------~~-------------~----g~~~~-~~~~~~ 74 (321)
T PRK07084 21 KGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKG-AR-------KY-------------A----NATLL-RYMAQG 74 (321)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechh-HH-------hh-------------C----CchHH-HHHHHH
Confidence 456778888888876544 4455688888877654 11 00 0 11000 011 12
Q ss_pred HHHHHh-c--CCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCCh
Q 027740 111 LEWMRE-A--NCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPL 187 (219)
Q Consensus 111 i~~lk~-~--~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p 187 (219)
+..+.+ . .+||.+-=||.. . ......|+.+|.+-+||. .+ +++.
T Consensus 75 ~~~~a~~a~~~VPV~lHLDHg~----------------~-----~e~i~~ai~~GftSVMiD-----------~S-~lp~ 121 (321)
T PRK07084 75 AVEYAKELGCPIPIVLHLDHGD----------------S-----FELCKDCIDSGFSSVMID-----------GS-HLPY 121 (321)
T ss_pred HHHHHHHcCCCCcEEEECCCCC----------------C-----HHHHHHHHHcCCCEEEee-----------CC-CCCH
Confidence 223332 3 689988788872 2 456788899999877765 22 2455
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 027740 188 RNLEELLEELVAIAKVSK 205 (219)
Q Consensus 188 ~el~~lv~~ir~i~~~lg 205 (219)
+|==++.+++.+.....|
T Consensus 122 eeNI~~T~evv~~Ah~~G 139 (321)
T PRK07084 122 EENVALTKKVVEYAHQFD 139 (321)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 554445555544444433
No 345
>PLN03231 putative alpha-galactosidase; Provisional
Probab=75.09 E-value=4.8 Score=37.65 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=27.2
Q ss_pred HHHHhhh-ccccccCCCCCCC-------HHHHHHHHhcCCeEEEeCC
Q 027740 29 CEEVGKV-ADIIQIPAFLCRQ-------TDLLVAAAKTGKIINIKKG 67 (219)
Q Consensus 29 ~~~l~~~-vd~~kI~S~~~~n-------~~LL~~~a~~gkPVilstG 67 (219)
++..++- ||++|.--..... ..+-+++.++|+||++|--
T Consensus 169 a~~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~tGRpIv~Slc 215 (357)
T PLN03231 169 YDQYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRNSGRPMIYSLS 215 (357)
T ss_pred HHHHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHHhCCCeEEEec
Confidence 4556777 9999986321111 3577888889999999863
No 346
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=75.04 E-value=51 Score=29.78 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=51.7
Q ss_pred ccccccCCCCCCCHHHH----HHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLL----VAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL----~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|++.+ +++-+.+.||||..... +.+ + . +++ .=...+
T Consensus 15 ~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~-~~~-------~-------------~----g~~---~~~~~~ 66 (284)
T PRK12857 15 KGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQG-AIK-------Y-------------A----GIE---YISAMV 66 (284)
T ss_pred HcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechh-Hhh-------h-------------C----CHH---HHHHHH
Confidence 45677899999997655 44555788888877654 211 0 0 111 001223
Q ss_pred HHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 112 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 112 ~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
..+.+ +.+||.+-=||.. . ......|+.+|.+.+||.
T Consensus 67 ~~~A~~~~VPValHLDH~~----------------~-----~e~i~~ai~~GftSVM~D 104 (284)
T PRK12857 67 RTAAEKASVPVALHLDHGT----------------D-----FEQVMKCIRNGFTSVMID 104 (284)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHcCCCeEEEe
Confidence 33444 7789888778872 2 455678888888876664
No 347
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=75.03 E-value=31 Score=25.49 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCCeEee---eCCcccHHHHhhh---ccccccCCCCCCC---HHHHHHHHhcCCeEEEeCCCCCCHHHH
Q 027740 5 LKILEKVKIAYDIPIVTD---VHETVQCEEVGKV---ADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVM 75 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt---~~d~~~~~~l~~~---vd~~kI~S~~~~n---~~LL~~~a~~gkPVilstG~~~t~~ei 75 (219)
...+++.++++|..+..= --+......+.+. +|++-+....+.+ ...-+++.+.++|++.+++.+ +..+
T Consensus 12 ~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~--~~~l 89 (97)
T PF10087_consen 12 ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRG--VSSL 89 (97)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCC--HHHH
Confidence 567888889999988765 2222222234443 5888777776664 233444555799999999765 7777
Q ss_pred HHHHHH
Q 027740 76 VNSAEK 81 (219)
Q Consensus 76 ~~A~e~ 81 (219)
..+++.
T Consensus 90 ~~~l~~ 95 (97)
T PF10087_consen 90 ERALER 95 (97)
T ss_pred HHHHHh
Confidence 777664
No 348
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=74.92 E-value=35 Score=28.40 Aligned_cols=91 Identities=9% Similarity=-0.019 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccH-------HHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEE-eCCCC------
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQC-------EEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINI-KKGQF------ 69 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~-------~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVil-stG~~------ 69 (219)
+.-+.++++++|..++....+...- +.+... +|.+-+-+.+-...+.++.+.+.+.||++ .+...
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~~~~~~~~~~~ 97 (270)
T cd01545 18 QLGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPGTPDPDSPC 97 (270)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCCEEEEecCCCCCCCCe
Confidence 4567788889999988876664321 223233 67665544432345677888888999874 32210
Q ss_pred --C-CHHHHHHHHHHHHHcCCCcEEEEee
Q 027740 70 --C-ASSVMVNSAEKVRLAGNPNVMVCER 95 (219)
Q Consensus 70 --~-t~~ei~~A~e~i~~~Gn~~i~L~~c 95 (219)
. ..+-...|++++...|..++.++..
T Consensus 98 V~~d~~~~g~~a~~~l~~~g~~~i~~i~~ 126 (270)
T cd01545 98 VRIDDRAAAREMTRHLIDLGHRRIAFIAG 126 (270)
T ss_pred EEeccHHHHHHHHHHHHHCCCceEEEEeC
Confidence 0 2344477888898899999988763
No 349
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=74.77 E-value=64 Score=28.96 Aligned_cols=142 Identities=16% Similarity=0.232 Sum_probs=80.0
Q ss_pred HHHHHHHhcC-CCeEeeeCCcccHHHHh---hh-ccccccCCCCCCC---H----HHHHHHHhcCCeEEEeCCCC-----
Q 027740 7 ILEKVKIAYD-IPIVTDVHETVQCEEVG---KV-ADIIQIPAFLCRQ---T----DLLVAAAKTGKIINIKKGQF----- 69 (219)
Q Consensus 7 ~L~~~~~~~G-i~~~tt~~d~~~~~~l~---~~-vd~~kI~S~~~~n---~----~LL~~~a~~gkPVilstG~~----- 69 (219)
....+|++.+ +|+.----.-.+++.+. +. ++.+++-...+.- . .+.+.+-+.|.+|=..-|.-
T Consensus 64 ~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed 143 (282)
T TIGR01859 64 MVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIED 143 (282)
T ss_pred HHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccc
Confidence 4466778888 88876544233444433 34 6677777766653 2 23333344577877665551
Q ss_pred ------CCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCC-CCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCC
Q 027740 70 ------CASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYN-DLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGG 140 (219)
Q Consensus 70 ------~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~-~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~ 140 (219)
.+..+.++|.+.+...|.. .+-.-.|+.+ -|+ ...+|+..|..+++ .++|+.. |. +
T Consensus 144 ~~~g~~~~~t~~eea~~f~~~tgvD-~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~iPlv~---hG-----------g 208 (282)
T TIGR01859 144 GVDEKEAELADPDEAEQFVKETGVD-YLAAAIGTSHGKYKGEPGLDFERLKEIKELTNIPLVL---HG-----------A 208 (282)
T ss_pred cccccccccCCHHHHHHHHHHHCcC-EEeeccCccccccCCCCccCHHHHHHHHHHhCCCEEE---EC-----------C
Confidence 1122334444445445664 4444455543 122 13478888888887 7899865 32 2
Q ss_pred CccCCCCcccHHHHHHHHHHcCCcEEEEee
Q 027740 141 GVASGGLRELIPCIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 141 ~~~~~G~~~~~~~~~~aAvalGA~GlvIEk 170 (219)
+ |.. ..-...++..|++++=|=.
T Consensus 209 S----Gi~---~e~i~~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 209 S----GIP---EEQIKKAIKLGIAKINIDT 231 (282)
T ss_pred C----CCC---HHHHHHHHHcCCCEEEECc
Confidence 2 221 3345677888999765543
No 350
>PRK00208 thiG thiazole synthase; Reviewed
Probab=74.74 E-value=51 Score=29.44 Aligned_cols=46 Identities=30% Similarity=0.494 Sum_probs=34.5
Q ss_pred ccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 106 VDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 106 ~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
.|...+..+++ .++||+.|.--+ . +.-+..|..+||||+++-+-.+
T Consensus 162 ~~~~~i~~i~e~~~vpVIveaGI~-----------------t-----peda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 162 LNPYNLRIIIEQADVPVIVDAGIG-----------------T-----PSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred CCHHHHHHHHHhcCCeEEEeCCCC-----------------C-----HHHHHHHHHcCCCEEEEChHhh
Confidence 35666788887 799999863321 1 5667789999999999988765
No 351
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=74.71 E-value=54 Score=28.14 Aligned_cols=60 Identities=15% Similarity=0.083 Sum_probs=28.7
Q ss_pred CHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCcc-chhHHHHHh-c-CCCEE
Q 027740 48 QTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD-PRNLEWMRE-A-NCPVV 122 (219)
Q Consensus 48 n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~n-l~~i~~lk~-~-~~pV~ 122 (219)
|.++++++-+.++|++ -|.+ |+.|+..|.+ .|.+-+=+. |...+. .+-+..|+. | ++|++
T Consensus 86 ~~~vi~~a~~~~i~~i--PG~~-TptEi~~A~~----~Ga~~vK~F--------Pa~~~GG~~yikal~~plp~~~l~ 148 (201)
T PRK06015 86 TQELLAAANDSDVPLL--PGAA-TPSEVMALRE----EGYTVLKFF--------PAEQAGGAAFLKALSSPLAGTFFC 148 (201)
T ss_pred CHHHHHHHHHcCCCEe--CCCC-CHHHHHHHHH----CCCCEEEEC--------CchhhCCHHHHHHHHhhCCCCcEE
Confidence 3444444444444443 2333 6666655533 455433332 222232 566677776 4 66664
No 352
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=74.64 E-value=42 Score=27.37 Aligned_cols=91 Identities=11% Similarity=-0.001 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcc---cHHHH---hhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCC--------
Q 027740 5 LKILEKVKIAYDIPIVTDVHETV---QCEEV---GKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF-------- 69 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~---~~~~l---~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~-------- 69 (219)
..-++++++++|+.+.....+.. +.+.+ ..- +|.+-+.+.+..... ++.+.+.|.||+.-....
T Consensus 18 ~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~~~~~~~~~v 96 (264)
T cd06267 18 LRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL-LEELAALGIPVVLVDRPLDGLGVDSV 96 (264)
T ss_pred HHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHHHcCCCEEEecccccCCCCCEE
Confidence 45677888889988887655532 22333 222 777777777766666 777888899997754331
Q ss_pred --CCHHHHHHHHHHHHHcCCCcEEEEeec
Q 027740 70 --CASSVMVNSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 70 --~t~~ei~~A~e~i~~~Gn~~i~L~~cg 96 (219)
-..+....+++++...|..++.++...
T Consensus 97 ~~d~~~~g~~~~~~l~~~g~~~i~~i~~~ 125 (264)
T cd06267 97 GIDNRAGAYLAVEHLIELGHRRIAFIGGP 125 (264)
T ss_pred eeccHHHHHHHHHHHHHCCCceEEEecCC
Confidence 034556667788888898888887543
No 353
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=74.57 E-value=74 Score=29.63 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=73.1
Q ss_pred HHHHHHHHHHh-cCCCeEee--eCCcccHHHHhhh-ccccccCCCCCCC---HHHHHHHHhcCCeEEEeCCCCCCHHHHH
Q 027740 4 GLKILEKVKIA-YDIPIVTD--VHETVQCEEVGKV-ADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVMV 76 (219)
Q Consensus 4 gl~~L~~~~~~-~Gi~~~tt--~~d~~~~~~l~~~-vd~~kI~S~~~~n---~~LL~~~a~~gkPVilstG~~~t~~ei~ 76 (219)
.+..|+++++. ..+|++.- +.|+.|+.....+ .|++-+=..-+.. ..|++.+.++|+-+++... +.+|++
T Consensus 168 s~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH---~~~Ele 244 (338)
T PLN02460 168 SFENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVH---DEREMD 244 (338)
T ss_pred CHHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHH
Confidence 46778888887 89999993 7789999888877 8875554444443 4677888889999999987 889999
Q ss_pred HHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh
Q 027740 77 NSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 116 (219)
Q Consensus 77 ~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~ 116 (219)
.|++. .|.+=|-+=.| +.....+|+.....|..
T Consensus 245 rAl~~---~ga~iIGINNR----dL~Tf~vDl~~t~~L~~ 277 (338)
T PLN02460 245 RVLGI---EGVELIGINNR----SLETFEVDISNTKKLLE 277 (338)
T ss_pred HHHhc---CCCCEEEEeCC----CCCcceECHHHHHHHhh
Confidence 88652 14332222223 34446688887777654
No 354
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=74.53 E-value=36 Score=29.01 Aligned_cols=90 Identities=11% Similarity=0.019 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCeEeeeCC-------cccHHHHh---hh-ccccccCCCCCCCHHHHHHHHhcCCeEEEe-CC----
Q 027740 4 GLKILEKVKIAYDIPIVTDVHE-------TVQCEEVG---KV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIK-KG---- 67 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d-------~~~~~~l~---~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVils-tG---- 67 (219)
-++.+.+.+++.|..++...++ ..+.+.+. +. +|.+-+.+....+.+.++.+.+.++|+++- ..
T Consensus 18 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~~~p~V~i~~~~~~~ 97 (280)
T cd06303 18 NIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLASGKTKIILQNITTPV 97 (280)
T ss_pred HHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhCCCCeEEEeCCCCCc
Confidence 3567888999999888775432 12233332 23 787766543333456777777777764443 21
Q ss_pred -------------CCCCHHHHHHHHHHHHH--cCCCcEEEEe
Q 027740 68 -------------QFCASSVMVNSAEKVRL--AGNPNVMVCE 94 (219)
Q Consensus 68 -------------~~~t~~ei~~A~e~i~~--~Gn~~i~L~~ 94 (219)
.. ..+-...+++++.+ .|..++.++.
T Consensus 98 ~~~~~~~~~~~V~~d-~~~~g~~~~~~L~~~~~g~~~i~~l~ 138 (280)
T cd06303 98 KAWLKHQPLLYVGFD-HAAGARLLADYFIKRYPNHARYAMLY 138 (280)
T ss_pred cccccCCCceEeCCC-HHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 11 22333567778888 7888988885
No 355
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.40 E-value=40 Score=27.91 Aligned_cols=91 Identities=13% Similarity=0.029 Sum_probs=57.6
Q ss_pred HHHHHHHHHhcCCCeEeee--CCcc-cHHHHhh---h-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCC-----C--
Q 027740 5 LKILEKVKIAYDIPIVTDV--HETV-QCEEVGK---V-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF-----C-- 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~--~d~~-~~~~l~~---~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~-----~-- 70 (219)
++-+.++++++|..++... .|++ +.+.+.. . +|.+-|.+.+-...+.++.+.+.|.||++-.... .
T Consensus 18 ~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~~~~v 97 (268)
T cd06289 18 AAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESGIPVVLVAREVAGAPFDYV 97 (268)
T ss_pred HHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcCCCEEEEeccCCCCCCCEE
Confidence 3456688899998865432 2232 2223332 2 7777776655444567788888899998653211 0
Q ss_pred ---CHHHHHHHHHHHHHcCCCcEEEEee
Q 027740 71 ---ASSVMVNSAEKVRLAGNPNVMVCER 95 (219)
Q Consensus 71 ---t~~ei~~A~e~i~~~Gn~~i~L~~c 95 (219)
.......+++++.+.|..++.++..
T Consensus 98 ~~d~~~~~~~~~~~l~~~g~~~i~~l~~ 125 (268)
T cd06289 98 GPDNAAGARLATEHLISLGHRRIAFIGG 125 (268)
T ss_pred eecchHHHHHHHHHHHHCCCCCEEEecC
Confidence 2355677888899999999988753
No 356
>PLN02808 alpha-galactosidase
Probab=74.37 E-value=4 Score=38.54 Aligned_cols=72 Identities=17% Similarity=0.168 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhcCCCeEe--e-------e-------CCcccHHHHhhh-ccccccCCCCCC-------CHHHHHHHHhc
Q 027740 3 EGLKILEKVKIAYDIPIVT--D-------V-------HETVQCEEVGKV-ADIIQIPAFLCR-------QTDLLVAAAKT 58 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~t--t-------~-------~d~~~~~~l~~~-vd~~kI~S~~~~-------n~~LL~~~a~~ 58 (219)
.|++.|.+|.+++|+.|-- + - |...+++..++- +|++|+-..... -..+-+++.++
T Consensus 97 ~G~~~lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~~~~~~~y~~m~~AL~~t 176 (386)
T PLN02808 97 SGIKALADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGIDYLKYDNCENTGTSPQERYPKMSKALLNS 176 (386)
T ss_pred ccHHHHHHHHHHCCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHhCCCEEeecCcCCCCccHHHHHHHHHHHHHHh
Confidence 4899999999999999853 1 1 122344556666 999998765332 23477888999
Q ss_pred CCeEEEeC---CCCCCHHHH
Q 027740 59 GKIINIKK---GQFCASSVM 75 (219)
Q Consensus 59 gkPVilst---G~~~t~~ei 75 (219)
|+||++|- |.. ++.+|
T Consensus 177 GRpi~~slc~wg~~-~p~~w 195 (386)
T PLN02808 177 GRPIFFSLCEWGQE-DPATW 195 (386)
T ss_pred CCCeEEEecCCCCC-CHHHH
Confidence 99999884 444 55444
No 357
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=74.18 E-value=23 Score=31.97 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC----CCccch---hHHHHHh-cCCCEEEcCCCCCCCCCCCccC
Q 027740 67 GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND----LIVDPR---NLEWMRE-ANCPVVADVTHSLQQPAGKKLD 138 (219)
Q Consensus 67 G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~----~~~nl~---~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~ 138 (219)
|...+++++..-++...+.|..=|=+-=..|..+++. ++.+ | .|..+++ +++||-+|+.+.
T Consensus 32 g~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~-Rv~pvI~~l~~~~~~~ISIDT~~~---------- 100 (282)
T PRK11613 32 GTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELD-RVIPVVEAIAQRFEVWISVDTSKP---------- 100 (282)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHH-HHHHHHHHHHhcCCCeEEEECCCH----------
Confidence 3445778877777777788865222222222222321 1222 3 3445555 689999987764
Q ss_pred CCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 139 GGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 139 ~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
.++.+|+..||+ +|
T Consensus 101 --------------~va~~AL~~Gad--iI 114 (282)
T PRK11613 101 --------------EVIRESAKAGAH--II 114 (282)
T ss_pred --------------HHHHHHHHcCCC--EE
Confidence 566677777777 55
No 358
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=74.02 E-value=18 Score=31.98 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC----CCcc-c-hhHHHHHh-cCCCEEEcCCCC
Q 027740 67 GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND----LIVD-P-RNLEWMRE-ANCPVVADVTHS 128 (219)
Q Consensus 67 G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~----~~~n-l-~~i~~lk~-~~~pV~~ds~Hs 128 (219)
|...+.+++.+-++...+.|-.=|=+.=+++..+++. ++.+ + ..+..++. +++||.+|+.+.
T Consensus 18 ~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~ 86 (257)
T cd00739 18 GRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTFRA 86 (257)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCH
Confidence 4445778888888888888876444444444432221 1111 0 13455555 689999997764
No 359
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=73.99 E-value=30 Score=31.29 Aligned_cols=93 Identities=12% Similarity=0.007 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCc--cc----HHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCC-------
Q 027740 4 GLKILEKVKIAYDIPIVTDVHET--VQ----CEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF------- 69 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~--~~----~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~------- 69 (219)
-+.-+.+.|++.|..++-...+. +. ++.+.+. +|-+-+.+ ...|.++++.+.+.+.|+++=-...
T Consensus 76 i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~-~~~~~~~~~~l~~~~~P~V~i~~~~~~~~~~~ 154 (333)
T COG1609 76 ILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG-ERPNDSLLELLAAAGIPVVVIDRSPPGLGVPS 154 (333)
T ss_pred HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec-CCCCHHHHHHHHhcCCCEEEEeCCCccCCCCE
Confidence 46678889999999988877665 22 3344444 88877777 6678888999999999977644321
Q ss_pred C---CHHHHHHHHHHHHHcCCCcEEEEeecC
Q 027740 70 C---ASSVMVNSAEKVRLAGNPNVMVCERGT 97 (219)
Q Consensus 70 ~---t~~ei~~A~e~i~~~Gn~~i~L~~cgs 97 (219)
. .-.-...|++++.+.|.+++.++.-..
T Consensus 155 V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~ 185 (333)
T COG1609 155 VGIDNFAGAYLATEHLIELGHRRIAFIGGPL 185 (333)
T ss_pred EEEChHHHHHHHHHHHHHCCCceEEEEeCCC
Confidence 1 123456678999999999999888653
No 360
>PRK06256 biotin synthase; Validated
Probab=73.98 E-value=34 Score=30.83 Aligned_cols=75 Identities=13% Similarity=-0.037 Sum_probs=39.4
Q ss_pred hcCCCeEee--eCCcccHHHHhhh-ccccccCCCCCCCH----------------HHHHHHHhcCCeEE--EeCCCCCCH
Q 027740 14 AYDIPIVTD--VHETVQCEEVGKV-ADIIQIPAFLCRQT----------------DLLVAAAKTGKIIN--IKKGQFCAS 72 (219)
Q Consensus 14 ~~Gi~~~tt--~~d~~~~~~l~~~-vd~~kI~S~~~~n~----------------~LL~~~a~~gkPVi--lstG~~~t~ 72 (219)
..++.+.++ ..+++.++.+.+. ++.+.++- +. +. .-++.+.+.|.+|. +=-|+.-|.
T Consensus 138 ~~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~l-Et-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ 215 (336)
T PRK06256 138 ETDLEICACLGLLTEEQAERLKEAGVDRYNHNL-ET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESL 215 (336)
T ss_pred cCCCcEEecCCcCCHHHHHHHHHhCCCEEecCC-cc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCH
Confidence 355555443 3566677777776 66665531 11 22 33334444455432 111344567
Q ss_pred HHHHHHHHHHHHcCCCcE
Q 027740 73 SVMVNSAEKVRLAGNPNV 90 (219)
Q Consensus 73 ~ei~~A~e~i~~~Gn~~i 90 (219)
+|+...++.+++-|...+
T Consensus 216 ed~~~~~~~l~~l~~~~v 233 (336)
T PRK06256 216 EDRVEHAFFLKELDADSI 233 (336)
T ss_pred HHHHHHHHHHHhCCCCEE
Confidence 777777777776664433
No 361
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=73.73 E-value=34 Score=29.79 Aligned_cols=114 Identities=13% Similarity=0.007 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c-----CC
Q 027740 46 CRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A-----NC 119 (219)
Q Consensus 46 ~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~-----~~ 119 (219)
|.-.++++.+.+.+.--++- + .+.++....++.+.+.|-+-+=+.-+ .|. .+.+|..|++ + ++
T Consensus 3 m~~~~~~~~l~~~~vi~Vvr-~--~~~~~a~~~~~al~~gGi~~iEiT~~-----tp~---a~~~i~~l~~~~~~~~p~~ 71 (222)
T PRK07114 3 FDRIAVLTAMKATGMVPVFY-H--ADVEVAKKVIKACYDGGARVFEFTNR-----GDF---AHEVFAELVKYAAKELPGM 71 (222)
T ss_pred CcHHHHHHHHHhCCEEEEEE-c--CCHHHHHHHHHHHHHCCCCEEEEeCC-----CCc---HHHHHHHHHHHHHhhCCCe
Confidence 33457788888877533333 3 27999999999999999775444443 332 4678888853 3 25
Q ss_pred CEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCC-------CCCCCCCCChHHHHH
Q 027740 120 PVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNA-------PVDGPTQWPLRNLEE 192 (219)
Q Consensus 120 pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a-------~~D~~~sl~p~el~~ 192 (219)
.||. .+=. . ...+.+|+.+||+ +++=-|++++-. .+=-+-.++|-|+.+
T Consensus 72 ~vGa-GTVl-----------------~-----~e~a~~a~~aGA~-FiVsP~~~~~v~~~~~~~~i~~iPG~~TpsEi~~ 127 (222)
T PRK07114 72 ILGV-GSIV-----------------D-----AATAALYIQLGAN-FIVTPLFNPDIAKVCNRRKVPYSPGCGSLSEIGY 127 (222)
T ss_pred EEee-EeCc-----------------C-----HHHHHHHHHcCCC-EEECCCCCHHHHHHHHHcCCCEeCCCCCHHHHHH
Confidence 5655 2222 2 5678899999999 677777776532 223344567777655
Q ss_pred HH
Q 027740 193 LL 194 (219)
Q Consensus 193 lv 194 (219)
-.
T Consensus 128 A~ 129 (222)
T PRK07114 128 AE 129 (222)
T ss_pred HH
Confidence 43
No 362
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=73.41 E-value=13 Score=32.71 Aligned_cols=82 Identities=11% Similarity=0.008 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcCCCeEeee--CCcccHHHHhhh-ccccccCCCCCCCH----------------HHHHHHHhcCCeEEEe
Q 027740 5 LKILEKVKIAYDIPIVTDV--HETVQCEEVGKV-ADIIQIPAFLCRQT----------------DLLVAAAKTGKIINIK 65 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~--~d~~~~~~l~~~-vd~~kI~S~~~~n~----------------~LL~~~a~~gkPVils 65 (219)
+..+.+..++.|+.+..++ .+++.++.+.+. ++.+.++-. .+. .-++.+.+.|.+|...
T Consensus 100 ~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~v~i~~E--~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 100 VEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDYYNHNLD--TSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCEEEEccc--CCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 4555556677899886653 778888888887 887766533 232 2344455567775322
Q ss_pred --CCCCCCHHHHHHHHHHHHHcCCC
Q 027740 66 --KGQFCASSVMVNSAEKVRLAGNP 88 (219)
Q Consensus 66 --tG~~~t~~ei~~A~e~i~~~Gn~ 88 (219)
.|..-+.+++...++.+...|-.
T Consensus 178 ~i~Gl~et~~d~~~~~~~l~~l~~~ 202 (296)
T TIGR00433 178 GIFGLGETVEDRIGLALALANLPPE 202 (296)
T ss_pred EEEeCCCCHHHHHHHHHHHHhCCCC
Confidence 35666888888888888877644
No 363
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=73.40 E-value=30 Score=29.38 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEc
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVAD 124 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~d 124 (219)
+....++.+.+.|...+++....... +. ...|+..+..+++ .++||.++
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~-~~-~~~n~~~~~~i~~~~~~pv~~~ 80 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASK-RG-REPLFELISNLAEECFMPLTVG 80 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcc-cC-CCCCHHHHHHHHHhCCCCEEEE
Confidence 55666777788899999998886541 11 2368888888877 78999885
No 364
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=72.81 E-value=70 Score=28.80 Aligned_cols=85 Identities=20% Similarity=0.178 Sum_probs=52.2
Q ss_pred ccccccCCCCCCCHHHHH----HHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLLV----AAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL~----~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
..-|-||++++.|++.++ ++-+.+.||||..... +.. ++ +++. =...+
T Consensus 10 ~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~-~~~--------------------~~----~~~~---~~~~~ 61 (276)
T cd00947 10 EGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEG-AIK--------------------YA----GLEL---LVAMV 61 (276)
T ss_pred HCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcc-hhh--------------------hC----CHHH---HHHHH
Confidence 455778999999976544 4555788999988765 211 00 1110 01223
Q ss_pred HHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 112 EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 112 ~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
..+.+ +.+||.+-=||.. . ......|+.+|.+-+||.
T Consensus 62 ~~~a~~~~VPV~lHLDH~~----------------~-----~~~i~~ai~~GftSVMiD 99 (276)
T cd00947 62 KAAAERASVPVALHLDHGS----------------S-----FELIKRAIRAGFSSVMID 99 (276)
T ss_pred HHHHHHCCCCEEEECCCCC----------------C-----HHHHHHHHHhCCCEEEeC
Confidence 33444 6788888778862 2 445567788888876664
No 365
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=72.69 E-value=34 Score=32.49 Aligned_cols=100 Identities=12% Similarity=0.092 Sum_probs=64.0
Q ss_pred HHHHHHHhcCCeEEE--eCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cC--CCEEEc
Q 027740 50 DLLVAAAKTGKIINI--KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN--CPVVAD 124 (219)
Q Consensus 50 ~LL~~~a~~gkPVil--stG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~--~pV~~d 124 (219)
+.++++-..|.++.+ .-..--+++-+...++.....|...|.|+..+-. .+|.. --.-+.++++ .. +++.+
T Consensus 121 ~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~-~~P~~--~~~~i~~l~~~v~~~~~l~~- 196 (409)
T COG0119 121 DAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGV-ATPNE--VADIIEALKANVPNKVILSV- 196 (409)
T ss_pred HHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCc-cCHHH--HHHHHHHHHHhCCCCCeEEE-
Confidence 456667777888884 3333335666666666667677888888876653 23321 1245667776 54 77877
Q ss_pred CCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 125 VTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 125 s~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
+-|-- .| +...-+++|+..||+ .+|.-+.
T Consensus 197 H~HnD---------------~G---~AvANslaAv~aGa~--~v~~Tvn 225 (409)
T COG0119 197 HCHND---------------LG---MAVANSLAAVEAGAD--QVEGTVN 225 (409)
T ss_pred EecCC---------------cc---hHHHHHHHHHHcCCc--EEEEecc
Confidence 55531 13 335568899999998 8887655
No 366
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=72.67 E-value=74 Score=28.80 Aligned_cols=34 Identities=3% Similarity=-0.008 Sum_probs=25.2
Q ss_pred ccccccCCCCCCCHHHH----HHHHhcCCeEEEeCCCC
Q 027740 36 ADIIQIPAFLCRQTDLL----VAAAKTGKIINIKKGQF 69 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL----~~~a~~gkPVilstG~~ 69 (219)
-.-|-||++++.|.+.+ +++-+.+.||||.....
T Consensus 15 ~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~ 52 (286)
T PRK08610 15 ENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEG 52 (286)
T ss_pred HCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc
Confidence 34577889999997655 44555788999988765
No 367
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=72.54 E-value=56 Score=30.96 Aligned_cols=169 Identities=15% Similarity=0.123 Sum_probs=98.8
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcc---cHHHHhhh--------ccccccCCCCCCCH--------------HHHHHHHhc
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETV---QCEEVGKV--------ADIIQIPAFLCRQT--------------DLLVAAAKT 58 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~---~~~~l~~~--------vd~~kI~S~~~~n~--------------~LL~~~a~~ 58 (219)
|+.-+++.+.-.+=|.+.+++-|. +.+.++++ +|++|=--. +.|+ .+-++-.+|
T Consensus 111 Gi~G~R~~lgv~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IKDDE~-l~~q~~~p~~eRv~a~~~a~~~a~~eT 189 (391)
T cd08209 111 GIEGIRQRLGVHDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIKDDEI-LFDNPLAPALERIRACRPVLQEVYEQT 189 (391)
T ss_pred CchHHHHHhCCCCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCccccccc-CCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 556667777778889999998884 44444443 455443222 2221 122334568
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh---cCCCEEEcCC-CCCCCCCC
Q 027740 59 GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE---ANCPVVADVT-HSLQQPAG 134 (219)
Q Consensus 59 gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~---~~~pV~~ds~-Hs~~~~~~ 134 (219)
|+..+..-...++.+|+.+=++.+++.|.+ . ++.+...++ +.++..|++ +++||..=+. |..-.+
T Consensus 190 G~~~~ya~NiT~~~~em~~ra~~~~~~G~~-~-~mv~~~~~G-------~~~l~~l~~~~~~~lpIhaHra~~ga~~~-- 258 (391)
T cd08209 190 GRRTLYAVNLTGPVFTLKEKARRLVEAGAN-A-LLFNVFAYG-------LDVLEALASDPEINVPIFAHPAFAGALYG-- 258 (391)
T ss_pred CCcceEEEEcCCCHHHHHHHHHHHHHhCCC-E-EEEeccccc-------hHHHHHHHhcCcCCcEEEecCCccccccc--
Confidence 998887777777899999999999999985 3 333333323 455666665 3677754111 110000
Q ss_pred CccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 027740 135 KKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 135 ~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i 200 (219)
++. -|.. +-.......--+|||.+.+-. .-+++..+.++..++.+.+|.=
T Consensus 259 ------~~~-~Gis-~~~~l~kl~RLaGaD~~~~~~--------~~Gk~~~~~~~~~~~~~~~~~~ 308 (391)
T cd08209 259 ------SPD-YGIA-ASVLLGTLMRLAGADAVLFPS--------PYGSVALSKEEALAIAEALRRG 308 (391)
T ss_pred ------CCC-CCCc-HHHHHHHHHHHcCCCccccCC--------ccCCcCCCHHHHHHHHHHHhCc
Confidence 000 1321 101234556678999543322 2577788888888888777653
No 368
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=72.53 E-value=60 Score=29.79 Aligned_cols=85 Identities=18% Similarity=0.184 Sum_probs=53.1
Q ss_pred ccccccCCCCCCCHHHHHH----HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH
Q 027740 36 ADIIQIPAFLCRQTDLLVA----AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL 111 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL~~----~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i 111 (219)
-.-|-||++++.|.+.+++ +-.++.||||..... ++. + . +.+ .=...+
T Consensus 14 ~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~-~~~-------~---~--------------g~~---~~~~~~ 65 (307)
T PRK05835 14 KEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEG-AIK-------Y---M--------------GID---MAVGMV 65 (307)
T ss_pred HCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc-HHh-------h---C--------------ChH---HHHHHH
Confidence 4557799999999876554 444688999987665 111 0 0 111 001223
Q ss_pred HHHHh-cC-CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 112 EWMRE-AN-CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 112 ~~lk~-~~-~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
..+.+ +. +||.+-=||.. . ......|+.+|.+-+|+.
T Consensus 66 ~~~a~~~~~VPValHLDHg~----------------~-----~e~i~~ai~~GftSVM~D 104 (307)
T PRK05835 66 KIMCERYPHIPVALHLDHGT----------------T-----FESCEKAVKAGFTSVMID 104 (307)
T ss_pred HHHHHhcCCCeEEEECCCCC----------------C-----HHHHHHHHHcCCCEEEEe
Confidence 33444 54 89988888873 2 566778999998877664
No 369
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=72.52 E-value=16 Score=29.36 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=41.4
Q ss_pred HHHHHHHHHh--cCCCeEeeeC-----CcccHHHH----hhh-ccccccCCCCCC---CHHHHHHHHh-c--CCeEEEeC
Q 027740 5 LKILEKVKIA--YDIPIVTDVH-----ETVQCEEV----GKV-ADIIQIPAFLCR---QTDLLVAAAK-T--GKIINIKK 66 (219)
Q Consensus 5 l~~L~~~~~~--~Gi~~~tt~~-----d~~~~~~l----~~~-vd~~kI~S~~~~---n~~LL~~~a~-~--gkPVilst 66 (219)
++.+++++++ .+++++-... +++.+..+ .+. ++++|..+.... |...++.+-+ . +.||+...
T Consensus 100 ~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~g 179 (201)
T cd00945 100 LEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAG 179 (201)
T ss_pred HHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEEC
Confidence 3445555555 4888876443 33334332 234 788888776221 3344444332 2 45787777
Q ss_pred CCCCCHHHHHHHHH
Q 027740 67 GQFCASSVMVNSAE 80 (219)
Q Consensus 67 G~~~t~~ei~~A~e 80 (219)
|.. +++.+..++.
T Consensus 180 g~~-~~~~~~~~~~ 192 (201)
T cd00945 180 GIK-TLEDALAAIE 192 (201)
T ss_pred CCC-CHHHHHHHHH
Confidence 777 6666665543
No 370
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=72.32 E-value=18 Score=33.93 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCeEe-eeCCcccHHHHhhh-ccccccCCCCC--C------CHH---HHHHHH--------hcC---Ce
Q 027740 6 KILEKVKIAYDIPIVT-DVHETVQCEEVGKV-ADIIQIPAFLC--R------QTD---LLVAAA--------KTG---KI 61 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~~--~------n~~---LL~~~a--------~~g---kP 61 (219)
..+.+++++.+++++. .+++.+++..+.+. +|.+.+|..-. + ..| .+..++ +++ .|
T Consensus 178 ~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vp 257 (369)
T TIGR01304 178 LNLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVH 257 (369)
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCce
Confidence 3577888899999998 89999988887777 99988764221 1 123 233332 233 79
Q ss_pred EEEeCCCCCCHHHHHHHHH
Q 027740 62 INIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 62 VilstG~~~t~~ei~~A~e 80 (219)
||-.=|+. +-.++..|+.
T Consensus 258 VIAdGGI~-tg~di~kAlA 275 (369)
T TIGR01304 258 VIADGGIE-TSGDLVKAIA 275 (369)
T ss_pred EEEeCCCC-CHHHHHHHHH
Confidence 99999999 9999988865
No 371
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=72.20 E-value=70 Score=28.76 Aligned_cols=77 Identities=12% Similarity=0.093 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 027740 7 ILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAG 86 (219)
Q Consensus 7 ~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~G 86 (219)
-++..|+++|..++-|.+=... .+.. .. .....+......+.|+++.-+.+ ++++|..|++.+...|
T Consensus 22 ~fR~l~~~~g~~~~~temi~~~--~l~~-------~~---~~~~~~~~~~~~~~p~i~ql~g~-~~~~~~~aa~~~~~~G 88 (319)
T TIGR00737 22 PFRRLVAEYGAGLTVCEMVSSE--AIVY-------DS---QRTMRLLDIAEDETPISVQLFGS-DPDTMAEAAKINEELG 88 (319)
T ss_pred HHHHHHHHHCCCEEEECCEEEh--hhhc-------CC---HHHHHHhhcCCccceEEEEEeCC-CHHHHHHHHHHHHhCC
Confidence 3567788899877766554322 1110 00 01111112224478999999998 9999999999998888
Q ss_pred CCcEEEEeecC
Q 027740 87 NPNVMVCERGT 97 (219)
Q Consensus 87 n~~i~L~~cgs 97 (219)
.. .+=++||+
T Consensus 89 ~d-~IelN~gc 98 (319)
T TIGR00737 89 AD-IIDINMGC 98 (319)
T ss_pred CC-EEEEECCC
Confidence 64 45556665
No 372
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=71.93 E-value=43 Score=27.75 Aligned_cols=89 Identities=7% Similarity=-0.095 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCCeEeeeCCccc------HHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEe-C---CC-C--C
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQ------CEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIK-K---GQ-F--C 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~------~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVils-t---G~-~--~ 70 (219)
+.-+.+.++++|..+.....+... ++.+.+. +|.+-+-+.+. +.+.++.+.+.+.||++= + .. . .
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~-~~~~~~~~~~~~ipvv~~~~~~~~~~~~~v 96 (268)
T cd01575 18 LQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEH-TERTRQLLRAAGIPVVEIMDLPPDPIDMAV 96 (268)
T ss_pred HHHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCC-CHHHHHHHHhcCCCEEEEecCCCCCCCCeE
Confidence 345678889999987764443221 2223233 77776655443 346677777889999862 2 10 1 1
Q ss_pred ---CHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 71 ---ASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 71 ---t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
..+-...+++++.+.|.+++.++-
T Consensus 97 ~~d~~~~~~~~~~~l~~~g~~~i~~i~ 123 (268)
T cd01575 97 GFSHAEAGRAMARHLLARGYRRIGFLG 123 (268)
T ss_pred EeCcHHHHHHHHHHHHHCCCCcEEEec
Confidence 134456678889999998888774
No 373
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=71.86 E-value=62 Score=29.66 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=60.7
Q ss_pred HHHHHHHhc-CC--eEEEeCCCC------CCHHHHHHHHHHHHHcCCCcEEEEeecCCC-C------C----CCCCccch
Q 027740 50 DLLVAAAKT-GK--IINIKKGQF------CASSVMVNSAEKVRLAGNPNVMVCERGTMF-G------Y----NDLIVDPR 109 (219)
Q Consensus 50 ~LL~~~a~~-gk--PVilstG~~------~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~------~----~~~~~nl~ 109 (219)
++++++-+. |. ||.++-+.. .|++|....++.+.+.|.-+++=++.|+.+ + + .....++.
T Consensus 196 eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~ 275 (343)
T cd04734 196 EVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLP 275 (343)
T ss_pred HHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHH
Confidence 556666553 54 566665542 368899888998988874344334444321 1 0 11123455
Q ss_pred hHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CcEEEEeeecC
Q 027740 110 NLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVHDD 173 (219)
Q Consensus 110 ~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalG-A~GlvIEkH~t 173 (219)
....+|+ .++||++..+-. . +..+..+++-| +|++++=+-+-
T Consensus 276 ~~~~ik~~~~ipvi~~G~i~-----------------~-----~~~~~~~l~~~~~D~V~~gR~~l 319 (343)
T cd04734 276 LAARIKQAVDLPVFHAGRIR-----------------D-----PAEAEQALAAGHADMVGMTRAHI 319 (343)
T ss_pred HHHHHHHHcCCCEEeeCCCC-----------------C-----HHHHHHHHHcCCCCeeeecHHhH
Confidence 5666777 789998854322 1 45566777765 99888766543
No 374
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=71.81 E-value=51 Score=28.69 Aligned_cols=90 Identities=11% Similarity=0.010 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCCCeEeeeC--Ccc----cHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCC------C--
Q 027740 5 LKILEKVKIAYDIPIVTDVH--ETV----QCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQ------F-- 69 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~--d~~----~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~------~-- 69 (219)
+.-+.+.+++.|..++.... ++. .++.+.+. +|.+-+.+....+.+.++.+.+.+.||++=... .
T Consensus 80 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~v~~~~~~~~~~~V 159 (328)
T PRK11303 80 AKYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRLQNDGLPIIALDRALDREHFTSV 159 (328)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHHHhcCCCEEEECCCCCCCCCCEE
Confidence 45677888899988765322 222 12223333 776666554334567788888889999763211 0
Q ss_pred --CCHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 70 --CASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 70 --~t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
-...-...+++++.+.|..+|.++.
T Consensus 160 ~~d~~~~~~~a~~~L~~~G~r~I~~i~ 186 (328)
T PRK11303 160 VSDDQDDAEMLAESLLKFPAESILLLG 186 (328)
T ss_pred EeCCHHHHHHHHHHHHHCCCCeEEEEe
Confidence 0223456688899999999988874
No 375
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=71.63 E-value=68 Score=27.96 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=55.0
Q ss_pred cCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCCcEEE------EeecCCCCCCCCCc--cchhHHHHHh---c--CCCEE
Q 027740 58 TGKIINIK--KGQFCASSVMVNSAEKVRLAGNPNVMV------CERGTMFGYNDLIV--DPRNLEWMRE---A--NCPVV 122 (219)
Q Consensus 58 ~gkPVils--tG~~~t~~ei~~A~e~i~~~Gn~~i~L------~~cgs~~~~~~~~~--nl~~i~~lk~---~--~~pV~ 122 (219)
+..||+.- +|.+ +.+++...++.+.+.|..-+.+ -.||..-+...... -...|...++ - +++|.
T Consensus 68 ~~~Pv~~D~~~G~g-~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~Ii 146 (243)
T cd00377 68 VDLPVIADADTGYG-NALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVII 146 (243)
T ss_pred ccCCEEEEcCCCCC-CHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEE
Confidence 47898864 7766 8889999999888888865555 11433211111001 1233333333 1 45665
Q ss_pred EcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 123 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 123 ~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
.=.|-.. ....|..+ ...-++++..+|||++++|--
T Consensus 147 ARTDa~~------------~~~~~~~e-ai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 147 ARTDALL------------AGEEGLDE-AIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred EEcCchh------------ccCCCHHH-HHHHHHHHHHcCCCEEEeCCC
Confidence 5222211 00012222 234567889999999999854
No 376
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=71.42 E-value=32 Score=33.44 Aligned_cols=99 Identities=15% Similarity=0.130 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhc--CCCeEeeeCCcccHHHHhhh---ccccccCCCCCCC-----------HHHHHHHHhcCCeEEEeC
Q 027740 3 EGLKILEKVKIAY--DIPIVTDVHETVQCEEVGKV---ADIIQIPAFLCRQ-----------TDLLVAAAKTGKIINIKK 66 (219)
Q Consensus 3 ~gl~~L~~~~~~~--Gi~~~tt~~d~~~~~~l~~~---vd~~kI~S~~~~n-----------~~LL~~~a~~gkPVilst 66 (219)
+-+..+++|.++. .+.+++-+-+.+.++-+.+. +|.+.||-+|+.- ..+++.+-+.|||+++.|
T Consensus 200 ~di~~~r~~l~~~~~~~~iiakIEt~~av~nldeI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~AT 279 (480)
T cd00288 200 SDVLEIREVLGEKGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITAT 279 (480)
T ss_pred HHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 3467788888765 46788888888877776664 9999999997752 356666777899999976
Q ss_pred CCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Q 027740 67 GQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN 102 (219)
Q Consensus 67 G~~--------~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~ 102 (219)
-|- .|-.|+-..+..+. .|..-++|-.-++.=.||
T Consensus 280 qmLeSM~~~p~PTRAEvtDVanav~-dG~D~vmLS~ETa~G~yP 322 (480)
T cd00288 280 QMLESMIYNPRPTRAEVSDVANAVL-DGTDCVMLSGETAKGKYP 322 (480)
T ss_pred hhHHHHhhCCCCCchhhHHHHHHHH-hCCcEEEEechhcCCCCH
Confidence 542 35667777777665 367667775554432455
No 377
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=71.26 E-value=15 Score=32.00 Aligned_cols=64 Identities=11% Similarity=-0.000 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc--CCeEEEeCCCC
Q 027740 6 KILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT--GKIINIKKGQF 69 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~--gkPVilstG~~ 69 (219)
+.+.++|+++|++++-=++.+..+....++ ++++|+=..++.-...++.+..- +.|++=.=|..
T Consensus 102 ~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV~ 168 (222)
T PRK07114 102 PDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGVE 168 (222)
T ss_pred HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccCCCCeEEeCCCCC
Confidence 467889999999999999999999998888 99999976656668888887762 34555555544
No 378
>PRK09206 pyruvate kinase; Provisional
Probab=71.20 E-value=36 Score=32.98 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhcC---CCeEeeeCCcccHHHHhhh---ccccccCCCCCC-----------CHHHHHHHHhcCCeEEEeC
Q 027740 4 GLKILEKVKIAYD---IPIVTDVHETVQCEEVGKV---ADIIQIPAFLCR-----------QTDLLVAAAKTGKIINIKK 66 (219)
Q Consensus 4 gl~~L~~~~~~~G---i~~~tt~~d~~~~~~l~~~---vd~~kI~S~~~~-----------n~~LL~~~a~~gkPVilst 66 (219)
-+..+++|.++.| +.+++-+-.++.++-+.+. +|.+.||-+|+. +..+++.+-+.|||||+.|
T Consensus 199 Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeIl~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~AT 278 (470)
T PRK09206 199 DVLEIREHLKAHGGENIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITAT 278 (470)
T ss_pred HHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4677888887764 7788888888887776664 899999999875 3456777788899999977
Q ss_pred CCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Q 027740 67 GQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN 102 (219)
Q Consensus 67 G~~--------~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~ 102 (219)
-|- .|-.|+-..+..+.. |..-++|-.-++.=.||
T Consensus 279 qmLeSM~~np~PTRAEvsDVanav~d-G~DavMLS~ETA~G~yP 321 (470)
T PRK09206 279 QMLDSMIKNPRPTRAEAGDVANAILD-GTDAVMLSGESAKGKYP 321 (470)
T ss_pred hhHHHHhhCCCCCchhhHHHHHHhhh-CCcEEEEechhcCCCCH
Confidence 553 356777777777763 66666665554432455
No 379
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=71.11 E-value=46 Score=32.11 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCcEEEEeee
Q 027740 152 PCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 152 ~~~~~aAvalGA~GlvIEkH 171 (219)
+....+|.++||+|+.+=+=
T Consensus 236 ~~~vaAAlaLGAdgV~~GT~ 255 (444)
T TIGR02814 236 PEAAAAAFMLGADFIVTGSV 255 (444)
T ss_pred HHHHHHHHHcCCcEEEeccH
Confidence 45566899999999887544
No 380
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=70.81 E-value=25 Score=33.41 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=54.6
Q ss_pred HHHHHHHHHhc-CCCeEe-eeCCcccHHHHhhh-ccccccCCC--------CC-----CCHHHH---HHHH-hcCCeEEE
Q 027740 5 LKILEKVKIAY-DIPIVT-DVHETVQCEEVGKV-ADIIQIPAF--------LC-----RQTDLL---VAAA-KTGKIINI 64 (219)
Q Consensus 5 l~~L~~~~~~~-Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~S~--------~~-----~n~~LL---~~~a-~~gkPVil 64 (219)
.+.+++..+++ +++++. .+-+.+.+..+.+. +|++++|-. .. -+...+ ..++ +.+.|||.
T Consensus 182 ~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVIA 261 (404)
T PRK06843 182 IELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIA 261 (404)
T ss_pred HHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEEE
Confidence 35566777777 677755 99999999999998 999998721 11 133333 3333 35899999
Q ss_pred eCCCCCCHHHHHHHHH
Q 027740 65 KKGQFCASSVMVNSAE 80 (219)
Q Consensus 65 stG~~~t~~ei~~A~e 80 (219)
.-|.. +..++..|+.
T Consensus 262 dGGI~-~~~Di~KALa 276 (404)
T PRK06843 262 DGGIR-FSGDVVKAIA 276 (404)
T ss_pred eCCCC-CHHHHHHHHH
Confidence 99999 9999998865
No 381
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=70.60 E-value=26 Score=34.48 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=46.3
Q ss_pred CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCC--CCCCCCChHHHHHHHHH
Q 027740 119 CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPV--DGPTQWPLRNLEELLEE 196 (219)
Q Consensus 119 ~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~--D~~~sl~p~el~~lv~~ 196 (219)
+||++|.+..- +|... +....+..+..||.|+-||-...+.|.-. .++.-.+.+++-+=+..
T Consensus 151 iPIiaD~DtGy---------------G~~~~-v~~~vk~~ieaGAaGI~IEDq~~~~KkcGh~~gk~Lvp~~e~v~RI~A 214 (527)
T TIGR01346 151 VPIVADGDAGF---------------GGATA-VFKLQKAFIERGAAGVHWEDQLSSEKKCGHMAGKVLIPVQEHVNRLVA 214 (527)
T ss_pred cceEEECCCCC---------------CCcHH-HHHHHHHHHHcCCeEEEEEcCCCcccccCCCCCCcccCHHHHHHHHHH
Confidence 69999988764 23222 34567788999999999998765444332 23334566666666666
Q ss_pred HHHHHHHhCC
Q 027740 197 LVAIAKVSKG 206 (219)
Q Consensus 197 ir~i~~~lg~ 206 (219)
+|.....+|.
T Consensus 215 Ar~Aad~~g~ 224 (527)
T TIGR01346 215 ARLAADIMGV 224 (527)
T ss_pred HHHHHHhcCC
Confidence 6666555664
No 382
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=69.99 E-value=50 Score=29.41 Aligned_cols=161 Identities=17% Similarity=0.191 Sum_probs=90.6
Q ss_pred HHHHHHhcCCCeEeeeCCcccHHH--Hhh-h-ccccccCCC-----------CCCCHHHHHHHHhcCCeEE------EeC
Q 027740 8 LEKVKIAYDIPIVTDVHETVQCEE--VGK-V-ADIIQIPAF-----------LCRQTDLLVAAAKTGKIIN------IKK 66 (219)
Q Consensus 8 L~~~~~~~Gi~~~tt~~d~~~~~~--l~~-~-vd~~kI~S~-----------~~~n~~LL~~~a~~gkPVi------lst 66 (219)
..++.++.++|+--.+.--..... ++. . .+|+.+..+ +-.-.+++++-.+.+..|- .|.
T Consensus 72 ~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh 151 (254)
T PF03437_consen 72 AREVRREVSVPVGVNVLRNDPKAALAIAAATGADFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKH 151 (254)
T ss_pred HHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhh
Confidence 345667778888776655322222 233 3 677765444 1112567777666555433 344
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCC
Q 027740 67 GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASG 145 (219)
Q Consensus 67 G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~ 145 (219)
+....-.++..+++...+.+..+- ||-.|...+.+ .++.-|...|+ .++||.+ .|-.. .
T Consensus 152 ~~~l~~~~~~~~~~~a~~~~~aDa-viVtG~~TG~~---~~~~~l~~vr~~~~~PVlv-GSGvt---------------~ 211 (254)
T PF03437_consen 152 SSPLATRDLEEAAKDAVERGGADA-VIVTGKATGEP---PDPEKLKRVREAVPVPVLV-GSGVT---------------P 211 (254)
T ss_pred cccCCCCCHHHHHHHHHHhcCCCE-EEECCcccCCC---CCHHHHHHHHhcCCCCEEE-ecCCC---------------H
Confidence 444333334444444333333443 33344443333 47888888888 7799988 33331 1
Q ss_pred CCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 146 GLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 146 G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
..+ ...---|||.++=++|--|-.+. .-++++-.++|++.+++
T Consensus 212 ------~Ni--~~~l~~ADG~IVGS~~K~~G~~~---n~VD~~Rv~~fm~~v~~ 254 (254)
T PF03437_consen 212 ------ENI--AEYLSYADGAIVGSYFKKDGKWE---NPVDPERVRRFMEAVKK 254 (254)
T ss_pred ------HHH--HHHHHhCCEEEEeeeeeeCCEeC---CcCCHHHHHHHHHHhhC
Confidence 111 11112389999999987665543 24689999999988763
No 383
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=69.90 E-value=31 Score=31.56 Aligned_cols=41 Identities=10% Similarity=0.224 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCeEe-ee---CCcccHHHHhhh-ccccccCCCC
Q 027740 5 LKILEKVKIAYDIPIVT-DV---HETVQCEEVGKV-ADIIQIPAFL 45 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t-t~---~d~~~~~~l~~~-vd~~kI~S~~ 45 (219)
++.+++.+++.++|++. .+ ++.+.+..+.+. +|++-|.++-
T Consensus 168 le~i~~i~~~~~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~g 213 (333)
T TIGR02151 168 LEKIAEICSQLSVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAG 213 (333)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 46788888888999986 23 566777778887 9999887764
No 384
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=69.87 E-value=39 Score=32.80 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCeEEEeCCCC--CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c----CCCEE
Q 027740 50 DLLVAAAKTGKIINIKKGQF--CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A----NCPVV 122 (219)
Q Consensus 50 ~LL~~~a~~gkPVilstG~~--~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~----~~pV~ 122 (219)
+.++++-+.|.-|.++--.+ .+++.+...++.+.+.|...|.||..+.. -+|. ++ ..-+..+++ + ++|++
T Consensus 121 ~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~-~~P~-~~-~~~i~~l~~~~~~~~~v~l~ 197 (494)
T TIGR00973 121 GMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGY-ALPA-EY-GNLIKGLRENVPNIDKAILS 197 (494)
T ss_pred HHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC-CCHH-HH-HHHHHHHHHhhccccCceEE
Confidence 45556666788888775433 25667777777777889887777776543 2332 22 244566666 4 36788
Q ss_pred EcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCC
Q 027740 123 ADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDP 174 (219)
Q Consensus 123 ~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~ 174 (219)
+ +.|-. .| +...-+++|+..||+ .||.-+.-
T Consensus 198 ~-H~HND---------------~G---lAvANalaAv~aGa~--~vd~tv~G 228 (494)
T TIGR00973 198 V-HCHND---------------LG---LAVANSLAAVQNGAR--QVECTING 228 (494)
T ss_pred E-EeCCC---------------CC---hHHHHHHHHHHhCCC--EEEEEeec
Confidence 7 67752 13 335567899999998 88876543
No 385
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=69.78 E-value=21 Score=33.43 Aligned_cols=84 Identities=18% Similarity=0.164 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCCeEe-eeCCcccHHHHhhh-ccccccCCCCCCC-------HHHHHHHHh-cCCeEEEeCCCCCCHHHHH
Q 027740 7 ILEKVKIAYDIPIVT-DVHETVQCEEVGKV-ADIIQIPAFLCRQ-------TDLLVAAAK-TGKIINIKKGQFCASSVMV 76 (219)
Q Consensus 7 ~L~~~~~~~Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~~~n-------~~LL~~~a~-~gkPVilstG~~~t~~ei~ 76 (219)
.++..++.++.+++- .+.+++++..+.++ +|.+.++-.--+| .+.|.++.+ .+.||+++-|.. +-.|+.
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~~~~vi~dGGIr-~g~Dv~ 305 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAATYKPVLIDSGIR-RGSDIV 305 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHhCCeEEEeCCCC-CHHHHH
Confidence 456666677767654 89999999999998 9998875443333 445555555 579999999999 888888
Q ss_pred HHHHHHHHcCCCcEEEEeec
Q 027740 77 NSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 77 ~A~e~i~~~Gn~~i~L~~cg 96 (219)
.|+. -|- +.+.+-|-
T Consensus 306 KALa----LGA-~aV~iGr~ 320 (361)
T cd04736 306 KALA----LGA-NAVLLGRA 320 (361)
T ss_pred HHHH----cCC-CEEEECHH
Confidence 7754 354 34444443
No 386
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=69.60 E-value=8.1 Score=28.90 Aligned_cols=60 Identities=18% Similarity=0.131 Sum_probs=45.1
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHH-HHhcCCeEEE
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVA-AAKTGKIINI 64 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~-~a~~gkPVil 64 (219)
.+.+++++++.|+++-.+..+..+++...+-.|++-++.--...++-+++ ++..++||.+
T Consensus 16 ~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~ 76 (96)
T cd05564 16 VKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAV 76 (96)
T ss_pred HHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEE
Confidence 46789999999999888888877776544447888887777777766665 5567888765
No 387
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=69.22 E-value=52 Score=29.44 Aligned_cols=26 Identities=12% Similarity=0.003 Sum_probs=21.9
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 027740 58 TGKIINIKKGQFCASSVMVNSAEKVRLA 85 (219)
Q Consensus 58 ~gkPVilstG~~~t~~ei~~A~e~i~~~ 85 (219)
.++||++|=+.. .+||..+++.+...
T Consensus 90 ~~~pvivsi~g~--~~~~~~~~~~~~~~ 115 (294)
T cd04741 90 SAKPFFISVTGS--AEDIAAMYKKIAAH 115 (294)
T ss_pred cCCeEEEECCCC--HHHHHHHHHHHHhh
Confidence 478999998755 99999999988765
No 388
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=69.16 E-value=22 Score=30.97 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=28.6
Q ss_pred eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHH
Q 027740 22 DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 22 t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e 80 (219)
|+.+++|++.+.+. .+++--|. .|-++++.+.+.++|++ =|.+ |+.|+..|.|
T Consensus 71 TVL~~~q~~~a~~aGa~fiVsP~---~~~ev~~~a~~~~ip~~--PG~~-TptEi~~Ale 124 (211)
T COG0800 71 TVLNPEQARQAIAAGAQFIVSPG---LNPEVAKAANRYGIPYI--PGVA-TPTEIMAALE 124 (211)
T ss_pred cccCHHHHHHHHHcCCCEEECCC---CCHHHHHHHHhCCCccc--CCCC-CHHHHHHHHH
Confidence 55555555555444 44433332 24555666655565543 4555 7777777765
No 389
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.07 E-value=56 Score=27.39 Aligned_cols=90 Identities=14% Similarity=0.046 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCCeEeee--CCcc----cHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCC------C-
Q 027740 5 LKILEKVKIAYDIPIVTDV--HETV----QCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF------C- 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~--~d~~----~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~------~- 70 (219)
+.-+.+.+++.|..++... .+++ .++.+.+. +|.+-+-+.+....++++.+.+.++||++=.... .
T Consensus 18 ~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~i~~~~~~~~~~V~ 97 (269)
T cd06281 18 FSGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVLLDRDMGGGADAVL 97 (269)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCCCEEEEecccCCCCCEEE
Confidence 4556788899999876533 3332 23333333 6766655444334567777778889987653110 0
Q ss_pred --CHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 71 --ASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 71 --t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
...-...|++++...|..++.++.
T Consensus 98 ~d~~~~g~~a~~~l~~~G~~~i~~l~ 123 (269)
T cd06281 98 FDHAAGMRQAVEYLISLGHRRIALVG 123 (269)
T ss_pred ECcHHHHHHHHHHHHHCCCcEEEEec
Confidence 123335678888889999987775
No 390
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=68.97 E-value=8 Score=29.05 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=46.6
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHH-hcCCeEEEe
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAA-KTGKIINIK 65 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a-~~gkPVils 65 (219)
...+++++++.|+++-.+..+..+++...+-.|++-++..-...++-+++.+ ..++||.+=
T Consensus 20 ~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 20 VNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred HHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEe
Confidence 4678999999999998888888887665544788888887777776666544 467888763
No 391
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=68.97 E-value=27 Score=28.70 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCCeEe---eeCCcccHHHHhhh-cccccc-CCCC------CCCHHHHHHHHh-cCCeEEEeCCCC
Q 027740 5 LKILEKVKIAYDIPIVT---DVHETVQCEEVGKV-ADIIQI-PAFL------CRQTDLLVAAAK-TGKIINIKKGQF 69 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t---t~~d~~~~~~l~~~-vd~~kI-~S~~------~~n~~LL~~~a~-~gkPVilstG~~ 69 (219)
+..+.++++++|+.++. +++++.++..+.+. +|++++ ++++ ....+.++++.+ .+.||.+.=|..
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~~GGI~ 168 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKLLGVKVAVAGGIT 168 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhhcCCCEEEECCcC
Confidence 45677788888888874 55566555554554 777777 3321 122455555544 456666665543
No 392
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=68.79 E-value=22 Score=30.94 Aligned_cols=76 Identities=18% Similarity=0.087 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCCeEeeeCCcccHHHH-hhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCC-CHHHHHHHHHHHH
Q 027740 6 KILEKVKIAYDIPIVTDVHETVQCEEV-GKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFC-ASSVMVNSAEKVR 83 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~~d~~~~~~l-~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~-t~~ei~~A~e~i~ 83 (219)
...+++++++|+++.+ +++.+ .+-+|+.-|.+..-...++..++.+.||+|++-+-.+. +.++.+.-.+..+
T Consensus 13 e~a~~~a~~~g~~~~~------d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gAlad~e~~~~l~~aA~ 86 (229)
T TIGR03855 13 KDAKELAERCGAKIVS------DFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGALADRELRERLREVAR 86 (229)
T ss_pred HHHHHHHHHhCCceEC------CHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCcccCCHHHHHHHHHHHH
Confidence 3456777888876543 34444 33499999999999999999999999999988554332 6667666666666
Q ss_pred HcCC
Q 027740 84 LAGN 87 (219)
Q Consensus 84 ~~Gn 87 (219)
+.|.
T Consensus 87 ~~g~ 90 (229)
T TIGR03855 87 SSGR 90 (229)
T ss_pred hcCC
Confidence 5544
No 393
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=68.77 E-value=89 Score=28.08 Aligned_cols=141 Identities=15% Similarity=0.180 Sum_probs=77.9
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHh-------hh-ccc--cccCCCCC--------CC-HHHHHHHHhcCCeEEEe
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVG-------KV-ADI--IQIPAFLC--------RQ-TDLLVAAAKTGKIINIK 65 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~-------~~-vd~--~kI~S~~~--------~n-~~LL~~~a~~gkPVils 65 (219)
-+.|.++.++.++..+-+.-.|.....=. +. +++ |.=++... .+ .++.+.+.+.++-|++-
T Consensus 55 ~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVflt 134 (257)
T COG2099 55 AEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFLT 134 (257)
T ss_pred HHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEEe
Confidence 34566677777777777777665554211 11 221 11111111 12 46677777788999999
Q ss_pred CCCCCCHHHHHHHHHH----------------HHHcCCC-cEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCC
Q 027740 66 KGQFCASSVMVNSAEK----------------VRLAGNP-NVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHS 128 (219)
Q Consensus 66 tG~~~t~~ei~~A~e~----------------i~~~Gn~-~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs 128 (219)
+|.. .+..+..+... +...|-+ .-+++-||- +. ++.| ...|+++++-+++ +--|
T Consensus 135 ~G~~-~l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GP---fs-~~~n---~all~q~~id~vI-tK~S 205 (257)
T COG2099 135 TGRQ-NLAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGP---FS-EEDN---KALLEQYRIDVVV-TKNS 205 (257)
T ss_pred cCcc-chHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCC---cC-hHHH---HHHHHHhCCCEEE-EccC
Confidence 9999 88888876542 1111221 223333332 11 1122 2335557888877 2222
Q ss_pred CCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 129 LQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
+.+||. ..=..||-++|+.=+|||++
T Consensus 206 -------------G~~Gg~----~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 206 -------------GGAGGT----YEKIEAARELGIPVIMIERP 231 (257)
T ss_pred -------------CcccCc----HHHHHHHHHcCCcEEEEecC
Confidence 122342 22345889999999999999
No 394
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=68.71 E-value=75 Score=27.20 Aligned_cols=114 Identities=16% Similarity=0.165 Sum_probs=68.5
Q ss_pred CcccHHHHhhhccccccCCCCCCCHHHHHHHHh------------c-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEE
Q 027740 25 ETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAK------------T-GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVM 91 (219)
Q Consensus 25 d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~------------~-gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~ 91 (219)
|..+++.+.++.++.-|. +-.+|..|++..++ . ..||.+-.=.. +.+++..-++.+.+.+. +++
T Consensus 5 Dsa~~~ei~~~~~~~~i~-GvTTNPsll~k~~~~~~~~~~~~i~~~~~~~v~~qv~~~-~~e~~i~~a~~l~~~~~-~~~ 81 (211)
T cd00956 5 DTADLEEIKKASETGLLD-GVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVVST-DAEGMVAEARKLASLGG-NVV 81 (211)
T ss_pred cCCCHHHHHHHHhcCCcC-ccccCHHHHHhcCCcCHHHHHHHHHHhcCCCEEEEEEeC-CHHHHHHHHHHHHHhCC-CEE
Confidence 555666666665555544 44456655553222 1 23666444333 79999999998887643 333
Q ss_pred EEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 92 VCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 92 L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
+ .- |... --+.++..|++.+++|+.=.-.+ ...+.+|..+||+ +|=-+
T Consensus 82 i-KI----P~T~--~gl~ai~~L~~~gi~v~~T~V~s-----------------------~~Qa~~Aa~AGA~--yvsP~ 129 (211)
T cd00956 82 V-KI----PVTE--DGLKAIKKLSEEGIKTNVTAIFS-----------------------AAQALLAAKAGAT--YVSPF 129 (211)
T ss_pred E-EE----cCcH--hHHHHHHHHHHcCCceeeEEecC-----------------------HHHHHHHHHcCCC--EEEEe
Confidence 3 32 2221 24778888877788887622233 5678899999998 65555
Q ss_pred cC
Q 027740 172 DD 173 (219)
Q Consensus 172 ~t 173 (219)
+.
T Consensus 130 vg 131 (211)
T cd00956 130 VG 131 (211)
T ss_pred cC
Confidence 44
No 395
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=68.46 E-value=36 Score=29.22 Aligned_cols=134 Identities=23% Similarity=0.260 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCCeEee---------eCCc---ccHHHHhhh-ccccccCCCCC----CCHHHHHHHHhcCCeEEEeC
Q 027740 4 GLKILEKVKIAYDIPIVTD---------VHET---VQCEEVGKV-ADIIQIPAFLC----RQTDLLVAAAKTGKIINIKK 66 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt---------~~d~---~~~~~l~~~-vd~~kI~S~~~----~n~~LL~~~a~~gkPVilst 66 (219)
|..-++...+..++|++-= +|=. ++++.|.+. +|++-+-+-+= +=.+|++++-+.+.+++ -
T Consensus 20 ~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~M--A 97 (192)
T PF04131_consen 20 GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRPETLEELIREIKEKYQLVM--A 97 (192)
T ss_dssp SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEE--E
T ss_pred CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEe--e
Confidence 4556666667777777642 2212 244455555 66665544221 12577888877774444 4
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC----CCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCc
Q 027740 67 GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND----LIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGV 142 (219)
Q Consensus 67 G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~----~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~ 142 (219)
.-+ |++|..+|.+ .|..-|- ++.++|.. ...|+.-+..|.+.++||+...--.
T Consensus 98 Dis-t~ee~~~A~~----~G~D~I~----TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~-------------- 154 (192)
T PF04131_consen 98 DIS-TLEEAINAAE----LGFDIIG----TTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIH-------------- 154 (192)
T ss_dssp E-S-SHHHHHHHHH----TT-SEEE-----TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS----------------
T ss_pred ecC-CHHHHHHHHH----cCCCEEE----cccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCC--------------
Confidence 445 8888888754 5654332 22233322 3356666666766688998742211
Q ss_pred cCCCCcccHHHHHHHHHHcCCcEEEEee
Q 027740 143 ASGGLRELIPCIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 143 ~~~G~~~~~~~~~~aAvalGA~GlvIEk 170 (219)
-+..+..|..+||+.+++=.
T Consensus 155 --------tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 155 --------TPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp --------SHHHHHHHHHTT-SEEEE-H
T ss_pred --------CHHHHHHHHhcCCeEEEECc
Confidence 16778899999999888754
No 396
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=68.42 E-value=92 Score=28.16 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=25.4
Q ss_pred ccccccCCCCCCCHHHHH----HHHhcCCeEEEeCCCC
Q 027740 36 ADIIQIPAFLCRQTDLLV----AAAKTGKIINIKKGQF 69 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL~----~~a~~gkPVilstG~~ 69 (219)
-.-|-||++++.|.+.++ ++-+.+.||||.....
T Consensus 15 ~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~ 52 (285)
T PRK07709 15 EGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEG 52 (285)
T ss_pred HCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcc
Confidence 456789999999986654 4455788999988665
No 397
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=68.20 E-value=74 Score=26.98 Aligned_cols=90 Identities=17% Similarity=0.100 Sum_probs=52.4
Q ss_pred HhcCCeEEEeCCC-------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCC
Q 027740 56 AKTGKIINIKKGQ-------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTH 127 (219)
Q Consensus 56 a~~gkPVilstG~-------~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~H 127 (219)
-+.|.|+++..-. ..+.+++..+++...+.|-. ++-. . |+ .|+..+..+.+ ..+||..-..-
T Consensus 119 ~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD-~Ik~----~--~~---~~~~~~~~i~~~~~~pvv~~GG~ 188 (235)
T cd00958 119 HKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGAD-IVKT----K--YT---GDAESFKEVVEGCPVPVVIAGGP 188 (235)
T ss_pred HHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCC-EEEe----c--CC---CCHHHHHHHHhcCCCCEEEeCCC
Confidence 3578999986532 02467778777766666765 3333 1 22 26777777776 77898651110
Q ss_pred CCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeee
Q 027740 128 SLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 128 s~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH 171 (219)
+. .. .+-.......+...||+|+.+=.-
T Consensus 189 ~~---------------~~-~~~~l~~~~~~~~~Ga~gv~vg~~ 216 (235)
T cd00958 189 KK---------------DS-EEEFLKMVYDAMEAGAAGVAVGRN 216 (235)
T ss_pred CC---------------CC-HHHHHHHHHHHHHcCCcEEEechh
Confidence 10 01 111123456788999999876443
No 398
>PRK07094 biotin synthase; Provisional
Probab=68.06 E-value=89 Score=27.86 Aligned_cols=48 Identities=10% Similarity=-0.115 Sum_probs=30.7
Q ss_pred HHHHHHHHcCCcEEEEeeecCCCCCC---CCCCCCCChHHHHHHHHHHHHH
Q 027740 153 CIARTAIAVGVDGVFMEVHDDPLNAP---VDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 153 ~~~~aAvalGA~GlvIEkH~t~d~a~---~D~~~sl~p~el~~lv~~ir~i 200 (219)
.....+...||+++|.+.++.-.|.. =|++.+.+.+-.+....-.+.+
T Consensus 264 ~~~~~~l~~Gan~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~ 314 (323)
T PRK07094 264 DGREKGLKAGANVVMPNLTPGEYRKLYSLYPGKICTGEEAAECRECIERRI 314 (323)
T ss_pred hhHHHHHHcCCceecCCCCchhhCcccccCCCCCCCCccHHHHHHHHHHHH
Confidence 34468899999999988765555543 2888877665554444333333
No 399
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.98 E-value=71 Score=26.68 Aligned_cols=90 Identities=11% Similarity=0.055 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCeEeeeCC--cc-c---HHHHhhh-ccccccCCCCC----CCHHHHHHHHhcCCeEEEeCC-CCC--
Q 027740 5 LKILEKVKIAYDIPIVTDVHE--TV-Q---CEEVGKV-ADIIQIPAFLC----RQTDLLVAAAKTGKIINIKKG-QFC-- 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d--~~-~---~~~l~~~-vd~~kI~S~~~----~n~~LL~~~a~~gkPVilstG-~~~-- 70 (219)
+.-+.+.|+++|..++....+ ++ + ++.+.+. +|.+-|-+... .+.+.++.+.+.|.||++=.. ...
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~~~~~~~ 97 (273)
T cd06292 18 AEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNGRAPPPL 97 (273)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcCCCCCCC
Confidence 456788899999887665443 21 2 2333333 77666643221 234668888888999876532 111
Q ss_pred --------CHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 71 --------ASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 71 --------t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
..+-...+++++.+.|..++.++.
T Consensus 98 ~~~~V~~d~~~~~~~~~~~l~~~g~~~i~~i~ 129 (273)
T cd06292 98 KVPHVSTDDALAMRLAVRHLVALGHRRIGFAS 129 (273)
T ss_pred CCCEEEECcHHHHHHHHHHHHHCCCceEEEEe
Confidence 134456788889999999998875
No 400
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=67.91 E-value=6.8 Score=33.68 Aligned_cols=76 Identities=12% Similarity=0.124 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHH---------------HHhhh-ccccccCCCCCC-----CHHHH-HHHHhcCC
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCE---------------EVGKV-ADIIQIPAFLCR-----QTDLL-VAAAKTGK 60 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~---------------~l~~~-vd~~kI~S~~~~-----n~~LL-~~~a~~gk 60 (219)
+-+..+.+.|+++|++++-++ .+...+ ...++ +|++|.....-. +..++ +.+.....
T Consensus 112 ~~i~~v~~~~~~~gl~vIlE~-~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~ 190 (236)
T PF01791_consen 112 EEIAAVVEECHKYGLKVILEP-YLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPV 190 (236)
T ss_dssp HHHHHHHHHHHTSEEEEEEEE-CECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSS
T ss_pred HHHHHHHHHHhcCCcEEEEEE-ecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCC
Confidence 346778889999999999984 333333 23345 899999887111 23334 44455788
Q ss_pred e----EEEeCCCCCCHHHHHHHHHH
Q 027740 61 I----INIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 61 P----VilstG~~~t~~ei~~A~e~ 81 (219)
| |.+|=|. +.+++...++.
T Consensus 191 p~~~~Vk~sGGi--~~~~~~~~l~~ 213 (236)
T PF01791_consen 191 PGKVGVKASGGI--DAEDFLRTLED 213 (236)
T ss_dssp TTTSEEEEESSS--SHHHHHHSHHH
T ss_pred CcceEEEEeCCC--ChHHHHHHHHH
Confidence 8 9999997 35555444443
No 401
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=67.88 E-value=60 Score=27.25 Aligned_cols=88 Identities=11% Similarity=-0.033 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcc---cH-HHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEe-CC----------C
Q 027740 5 LKILEKVKIAYDIPIVTDVHETV---QC-EEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIK-KG----------Q 68 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~---~~-~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVils-tG----------~ 68 (219)
++-+.+.+++.|..+.....+.. ++ +.+... +|.+-|-+.+ .+.+.++.+-+.|.||++= +. .
T Consensus 29 ~~gi~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~-~~~~~~~~~~~~~ipvV~~~~~~~~~~~~~V~~ 107 (275)
T cd06295 29 LGGIADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQH-DQDPLPERLAETGLPFVVWGRPLPGQPYCYVGS 107 (275)
T ss_pred HHHHHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCC-CChHHHHHHHhCCCCEEEECCccCCCCCCEEEE
Confidence 34467888999988776544433 22 223333 7766554433 2456688888889999862 11 1
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 69 FCASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 69 ~~t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
. ..+-...+++++...|..++.++.
T Consensus 108 d-~~~~g~~~a~~l~~~g~~~i~~i~ 132 (275)
T cd06295 108 D-NVGGGRLATEHLLARGRRRIAFLG 132 (275)
T ss_pred C-cHHHHHHHHHHHHHCCCCeEEEEc
Confidence 1 234456677888889998888774
No 402
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=67.77 E-value=9.2 Score=32.17 Aligned_cols=49 Identities=14% Similarity=0.085 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCeEEEeCCCCCCHH------HHHHHHHHHHHcCCCcEEEEeecCC
Q 027740 50 DLLVAAAKTGKIINIKKGQFCASS------VMVNSAEKVRLAGNPNVMVCERGTM 98 (219)
Q Consensus 50 ~LL~~~a~~gkPVilstG~~~t~~------ei~~A~e~i~~~Gn~~i~L~~cgs~ 98 (219)
++++.+++.|+||++-+|+..... ......+.+...-+-++++.|+|..
T Consensus 121 ~~~~~~~~~~~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~~~P~l~ii~~H~G~~ 175 (273)
T PF04909_consen 121 PIFEAAEELGLPVLIHTGMTGFPDAPSDPADPEELEELLERFPDLRIILAHLGGP 175 (273)
T ss_dssp HHHHHHHHHT-EEEEEESHTHHHHHHHHHHHHHHHTTHHHHSTTSEEEESGGGTT
T ss_pred HHHHHHHhhccceeeeccccchhhhhHHHHHHHHHHHHHHHhcCCeEEEecCccc
Confidence 899999999999999988221111 1122223344555568999999974
No 403
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.56 E-value=81 Score=27.17 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=40.0
Q ss_pred eeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 027740 22 DVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG 100 (219)
Q Consensus 22 t~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~ 100 (219)
|+.+.++++...+. .+|+-.+.. |.++++.+-+.+.|.+ -|.. |+.|+..| .+.|.+-+-+ ||
T Consensus 73 TVl~~~~a~~a~~aGA~FivsP~~---~~~vi~~a~~~~i~~i--PG~~-TptEi~~a----~~~Ga~~vKl------FP 136 (212)
T PRK05718 73 TVLNPEQLAQAIEAGAQFIVSPGL---TPPLLKAAQEGPIPLI--PGVS-TPSELMLG----MELGLRTFKF------FP 136 (212)
T ss_pred eccCHHHHHHHHHcCCCEEECCCC---CHHHHHHHHHcCCCEe--CCCC-CHHHHHHH----HHCCCCEEEE------cc
Confidence 45555555544444 444444432 2355555555454443 2333 66665544 3457665555 32
Q ss_pred CCCCCc-cchhHHHHHh-c-CCCEE
Q 027740 101 YNDLIV-DPRNLEWMRE-A-NCPVV 122 (219)
Q Consensus 101 ~~~~~~-nl~~i~~lk~-~-~~pV~ 122 (219)
.. .+ .+.-+..++. | ++|+.
T Consensus 137 a~--~~gg~~~lk~l~~p~p~~~~~ 159 (212)
T PRK05718 137 AE--ASGGVKMLKALAGPFPDVRFC 159 (212)
T ss_pred ch--hccCHHHHHHHhccCCCCeEE
Confidence 21 12 3455666665 4 55654
No 404
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=67.54 E-value=31 Score=32.17 Aligned_cols=101 Identities=13% Similarity=0.015 Sum_probs=60.4
Q ss_pred HHHHHHhcCCeEEEe---CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC--CC--ccchhHHHHHh-cCC-C-
Q 027740 51 LLVAAAKTGKIINIK---KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYND--LI--VDPRNLEWMRE-ANC-P- 120 (219)
Q Consensus 51 LL~~~a~~gkPVils---tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~--~~--~nl~~i~~lk~-~~~-p- 120 (219)
+.+.++..++|++.. --...+.++....++.+...|..=|...+....++|-+ +. +=..++...++ ++- +
T Consensus 121 ~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~ 200 (367)
T cd08205 121 LRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTL 200 (367)
T ss_pred HHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcce
Confidence 345556668888754 23356899999999999999987666777766654432 11 11223333333 333 3
Q ss_pred EEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEee
Q 027740 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEV 170 (219)
Q Consensus 121 V~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEk 170 (219)
+..+.+.+ ..++ ...+..|..+||+|+|+-.
T Consensus 201 y~~nit~~------------------~~e~-i~~a~~a~~~Gad~vmv~~ 231 (367)
T cd08205 201 YAPNITGD------------------PDEL-RRRADRAVEAGANALLINP 231 (367)
T ss_pred EEEEcCCC------------------HHHH-HHHHHHHHHcCCCEEEEec
Confidence 33333222 1222 3456778999999999864
No 405
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=67.54 E-value=1.1e+02 Score=28.59 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcc---cHHHHhh-------h-ccccccCCCCCCC------------HHHHHHHH-hcC
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETV---QCEEVGK-------V-ADIIQIPAFLCRQ------------TDLLVAAA-KTG 59 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~---~~~~l~~-------~-vd~~kI~S~~~~n------------~~LL~~~a-~~g 59 (219)
|+.-+++.+.-.+=|.+.|+|.+. +.+.+++ - +|.+|.-...-.+ ..-++++. +||
T Consensus 117 Gi~g~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG 196 (367)
T cd08205 117 GIEGLRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETG 196 (367)
T ss_pred CchhHHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhC
Confidence 566677777788889999999987 2333333 3 6666655443333 12233333 455
Q ss_pred C-eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcC-CCCCCCCCCCc
Q 027740 60 K-IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADV-THSLQQPAGKK 136 (219)
Q Consensus 60 k-PVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds-~Hs~~~~~~~~ 136 (219)
+ ++.+-+..+ +.+|+.+=++...+.|.. .+++- .-.|+ +.++..+++ .++||..-. .|..-..
T Consensus 197 ~~~~y~~nit~-~~~e~i~~a~~a~~~Gad-~vmv~-~~~~g-------~~~~~~l~~~~~lpi~~H~a~~ga~~~---- 262 (367)
T cd08205 197 RKTLYAPNITG-DPDELRRRADRAVEAGAN-ALLIN-PNLVG-------LDALRALAEDPDLPIMAHPAFAGALSR---- 262 (367)
T ss_pred CcceEEEEcCC-CHHHHHHHHHHHHHcCCC-EEEEe-ccccc-------ccHHHHHHhcCCCeEEEccCccccccc----
Confidence 4 666666666 679999999999999985 33332 22222 234555666 788875411 1111000
Q ss_pred cCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 137 LDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 137 ~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
++.. |... ......+-..|+|.++.-.+ -.++..+++++.++.+.++.
T Consensus 263 ----~~~~-g~~~--~~~~kl~RlaGad~~~~~~~--------~gk~~~~~~~~~~la~~~~~ 310 (367)
T cd08205 263 ----SPDY-GSHF--LLLGKLMRLAGADAVIFPGP--------GGRFPFSREECLAIARACRR 310 (367)
T ss_pred ----CCCC-cCCH--HHHHHHHHHcCCCccccCCC--------ccCcCCCHHHHHHHHHHHhC
Confidence 1111 2211 33456677889994333221 23777888888888775443
No 406
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=67.28 E-value=17 Score=34.14 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=73.2
Q ss_pred hhHHHHHH-HHHHhcCCCeEeeeCCccc-HHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHH-HHHHH
Q 027740 2 VEGLKILE-KVKIAYDIPIVTDVHETVQ-CEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASS-VMVNS 78 (219)
Q Consensus 2 ~~gl~~L~-~~~~~~Gi~~~tt~~d~~~-~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~-ei~~A 78 (219)
.+|.+||- +.|+--++.++|--.++++ +.-+..+++.+.++..+++|.++-..= |+- -++. -++ -+..-
T Consensus 114 aaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~dltd~~---Gaa----~~~d-~l~pkl~rR 185 (402)
T COG3598 114 AAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNMDLTDVS---GAA----DESD-VLSPKLYRR 185 (402)
T ss_pred HhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhheeccccc---cCC----Cccc-cccHHHHHH
Confidence 57889998 8888888888885555554 445666699999999999999973221 100 0111 111 23334
Q ss_pred HHHHHHcCCCcEEEEeecCCCCCCCCCcc--chh-HHHHH---h-cCCCEEEcCCCCC
Q 027740 79 AEKVRLAGNPNVMVCERGTMFGYNDLIVD--PRN-LEWMR---E-ANCPVVADVTHSL 129 (219)
Q Consensus 79 ~e~i~~~Gn~~i~L~~cgs~~~~~~~~~n--l~~-i~~lk---~-~~~pV~~ds~Hs~ 129 (219)
.+++.++-.++++++..-..|...++..| .+. |...| . .+|.|+| ++|+.
T Consensus 186 fek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~~~rkla~~l~caIiy-~hHts 242 (402)
T COG3598 186 FEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIKKTRKLARNLECAIIY-IHHTS 242 (402)
T ss_pred HHHHHHHhCCCeEEEcchhhhcCCccchhHHHHHHHHHHHHHHHhcCCeEEE-Eeccc
Confidence 45566666778888887666422222222 222 22223 3 5899988 78874
No 407
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.25 E-value=68 Score=26.77 Aligned_cols=88 Identities=10% Similarity=0.035 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCCeEeeeCCccc------HHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCC-------
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQ------CEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFC------- 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~------~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~------- 70 (219)
+..+.+.++++|..++....+..+ ++.+.+. +|.+-|.+.+ ..+.++.+.+.+.||++=.....
T Consensus 21 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~--~~~~~~~l~~~~ipvV~~~~~~~~~~~~~V 98 (268)
T cd06277 21 YRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGI--STEYIKEIKELGIPFVLVDHYIPNEKADCV 98 (268)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCC--ChHHHHHHhhcCCCEEEEccCCCCCCCCEE
Confidence 456788899999988776655433 1223233 7777775533 34557778788999876432110
Q ss_pred ---CHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 71 ---ASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 71 ---t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
..+-...+++++.+.|.+++.++.
T Consensus 99 ~~d~~~~~~~a~~~l~~~g~~~i~~i~ 125 (268)
T cd06277 99 LTDNYSGAYAATEYLIEKGHRKIGFVG 125 (268)
T ss_pred EecchHHHHHHHHHHHHCCCCcEEEEC
Confidence 112335577788888988888873
No 408
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=67.19 E-value=84 Score=27.25 Aligned_cols=143 Identities=17% Similarity=0.208 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHhcCCCeEe-eeCCc-------ccHHHHhhh-ccccccCCCCCCC-HHHHHHHHhcCC-eEEEeCCCCCC
Q 027740 3 EGLKILEKVKIAYDIPIVT-DVHET-------VQCEEVGKV-ADIIQIPAFLCRQ-TDLLVAAAKTGK-IINIKKGQFCA 71 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~t-t~~d~-------~~~~~l~~~-vd~~kI~S~~~~n-~~LL~~~a~~gk-PVilstG~~~t 71 (219)
.++.++++.+++..+++.- +-+++ .-++.+.+. ++.+-++--.... .++++.+-+.|. ++++=+... +
T Consensus 63 ~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T-~ 141 (242)
T cd04724 63 DVLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTT-P 141 (242)
T ss_pred HHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCC-C
Confidence 5788889988877888543 22242 224444555 6666663222223 367788888886 666566555 6
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEeecCCCCCCC-CCc-cchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCc
Q 027740 72 SSVMVNSAEKVRLAGNPNVMVCERGTMFGYND-LIV-DPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLR 148 (219)
Q Consensus 72 ~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~-~~~-nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~ 148 (219)
.+.++..++. ...-+.++-....++... ... ...-+..+|+ .++||.++. |.+
T Consensus 142 ~~~i~~i~~~----~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~~~~pI~vgg--------------------GI~ 197 (242)
T cd04724 142 DERIKKIAEL----ASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPIAVGF--------------------GIS 197 (242)
T ss_pred HHHHHHHHhh----CCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhcCCCcEEEEc--------------------cCC
Confidence 6666654431 222233322111122111 111 2255667777 789998852 221
Q ss_pred ccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 149 ELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 149 ~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
. ..-+...... |||+++=+.+.
T Consensus 198 ~--~e~~~~~~~~-ADgvVvGSaiv 219 (242)
T cd04724 198 T--PEQAAEVAKY-ADGVIVGSALV 219 (242)
T ss_pred C--HHHHHHHHcc-CCEEEECHHHH
Confidence 1 2234456667 99999987653
No 409
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=67.16 E-value=68 Score=29.47 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=61.1
Q ss_pred HHHHHHHh-cCCeEEEeCCC------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC--CC-CCCccchhHHHHHh-cC
Q 027740 50 DLLVAAAK-TGKIINIKKGQ------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFG--YN-DLIVDPRNLEWMRE-AN 118 (219)
Q Consensus 50 ~LL~~~a~-~gkPVilstG~------~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~--~~-~~~~nl~~i~~lk~-~~ 118 (219)
++++++-+ .+.||.++-.. +.+++|....++.+.+.|.. .+=++.|+.++ .+ ..-.++.....+|+ .+
T Consensus 197 eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD-~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ 275 (337)
T PRK13523 197 EIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVD-LIDVSSGAVVPARIDVYPGYQVPFAEHIREHAN 275 (337)
T ss_pred HHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCC-EEEeCCCCCCCCCCCCCccccHHHHHHHHhhcC
Confidence 35555544 36799987765 34899999999999888874 44456665221 01 01124445566777 78
Q ss_pred CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CcEEEEeee
Q 027740 119 CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVH 171 (219)
Q Consensus 119 ~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalG-A~GlvIEkH 171 (219)
+||+...+-. . +..+..+++-| +|++++=+-
T Consensus 276 ipVi~~G~i~-----------------~-----~~~a~~~l~~g~~D~V~~gR~ 307 (337)
T PRK13523 276 IATGAVGLIT-----------------S-----GAQAEEILQNNRADLIFIGRE 307 (337)
T ss_pred CcEEEeCCCC-----------------C-----HHHHHHHHHcCCCChHHhhHH
Confidence 9998743321 1 45677888877 886555444
No 410
>cd01292 metallo-dependent_hydrolases Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The family includes urease alpha, adenosine deaminase, phosphotriesterase dihydroorotases, allantoinases, hydantoinases, AMP-, adenine and cytosine deaminases, imidazolonepropionase, aryldialkylphosphatase, chlorohydrolases, formylmethanofuran dehydrogenases and others.
Probab=66.95 E-value=70 Score=26.21 Aligned_cols=114 Identities=18% Similarity=0.215 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhc-CCCeEe--eeCCcc----------cHHHHhhh----ccccccCCCCCC---C----HHHHHHHHhcC
Q 027740 4 GLKILEKVKIAY-DIPIVT--DVHETV----------QCEEVGKV----ADIIQIPAFLCR---Q----TDLLVAAAKTG 59 (219)
Q Consensus 4 gl~~L~~~~~~~-Gi~~~t--t~~d~~----------~~~~l~~~----vd~~kI~S~~~~---n----~~LL~~~a~~g 59 (219)
.+..+.+.+++. |+.+.. ..++.. ..+++.+. +..+++.+.... + ...++.+.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~a~~~~ 146 (275)
T cd01292 67 AIEAVAEAARASAGIRVVLGLGIPGVPAAVDEDAEALLLELLRRGLELGAVGLKLAGPYTATGLSDESLRRVLEEARKLG 146 (275)
T ss_pred HHHHHHHHHHHhcCeeeEEeccCCCCccccchhHHHHHHHHHHHHHhcCCeeEeeCCCCCCCCCCcHHHHHHHHHHHHcC
Confidence 467788888888 766653 344321 12333332 333444333221 2 35566667789
Q ss_pred CeEEEeCCCCCCH--HHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCC
Q 027740 60 KIINIKKGQFCAS--SVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHS 128 (219)
Q Consensus 60 kPVilstG~~~t~--~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs 128 (219)
.||.+-.+.. .. ..+...++.... ...+++.||+.. +...+..+++.++.+.+.+.+.
T Consensus 147 ~~i~~H~~~~-~~~~~~~~~~~~~~~~--~~~~~~~H~~~~--------~~~~~~~~~~~g~~~~~~~~~~ 206 (275)
T cd01292 147 LPVVIHAGEL-PDPTRALEDLVALLRL--GGRVVIGHVSHL--------DPELLELLKEAGVSLEVCPLSN 206 (275)
T ss_pred CeEEEeeCCc-ccCccCHHHHHHHHhc--CCCEEEECCccC--------CHHHHHHHHHcCCeEEECCccc
Confidence 9999999877 32 234445544433 357999999652 3455666666777777754443
No 411
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=66.92 E-value=68 Score=29.03 Aligned_cols=115 Identities=11% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHhhh-ccccccCCCCCCC----HHHHHHHHhcCCeEEEeCCC----CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC
Q 027740 30 EEVGKV-ADIIQIPAFLCRQ----TDLLVAAAKTGKIINIKKGQ----FCASSVMVNSAEKVRLAGNPNVMVCERGTMFG 100 (219)
Q Consensus 30 ~~l~~~-vd~~kI~S~~~~n----~~LL~~~a~~gkPVilstG~----~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~ 100 (219)
+.|... -.-|-||++++.| ...++++-+.+.||||.... ...++.+...+..+..+-.=.++|-.
T Consensus 8 ~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHL------ 81 (286)
T PRK12738 8 YLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHL------ 81 (286)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEEC------
Q ss_pred CCCCCccchhHHHHHhcCCC-EEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEe
Q 027740 101 YNDLIVDPRNLEWMREANCP-VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFME 169 (219)
Q Consensus 101 ~~~~~~nl~~i~~lk~~~~p-V~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIE 169 (219)
++--++..+...=+.+.. |++|.||. ...+=+...-...--+-+.|+-+|
T Consensus 82 --DHg~~~e~i~~ai~~GFtSVM~DgS~l-----------------p~eeNi~~T~evv~~Ah~~gv~VE 132 (286)
T PRK12738 82 --DHHESLDDIRRKVHAGVRSAMIDGSHF-----------------PFAENVKLVKSVVDFCHSQDCSVE 132 (286)
T ss_pred --CCCCCHHHHHHHHHcCCCeEeecCCCC-----------------CHHHHHHHHHHHHHHHHHcCCeEE
No 412
>PRK13753 dihydropteroate synthase; Provisional
Probab=66.85 E-value=99 Score=27.95 Aligned_cols=153 Identities=16% Similarity=0.162 Sum_probs=86.2
Q ss_pred HHHHHHHHhcCCCeEeeeCCcccHHHHhhh-cccc-ccCCCCCCCHHHHHHHHhcCCeEEEeC--C------CCC--C--
Q 027740 6 KILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADII-QIPAFLCRQTDLLVAAAKTGKIINIKK--G------QFC--A-- 71 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~-kI~S~~~~n~~LL~~~a~~gkPVilst--G------~~~--t-- 71 (219)
+.++... +.++++.-+-|+++-++...+. ++++ -|.++ ++-.+++.+++.+.|++|-- | +.. .
T Consensus 67 pvI~~l~-~~~~~ISIDT~~~~va~~al~aGadiINDVsg~--~d~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~ 143 (279)
T PRK13753 67 PLLDALS-DQMHRVSIDSFQPETQRYALKRGVGYLNDIQGF--PDPALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPE 143 (279)
T ss_pred HHHHHHH-hCCCcEEEECCCHHHHHHHHHcCCCEEEeCCCC--CchHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcc
Confidence 3444443 4578888899999988887777 7764 45443 36677888899999999832 1 010 1
Q ss_pred --HHHHH----HHHHHHHHcCCC-cEEEEeecCCCCC-CCCCcc---chhHHHHHh-cCCCEEEcCCC-C-CCCCCCCcc
Q 027740 72 --SSVMV----NSAEKVRLAGNP-NVMVCERGTMFGY-NDLIVD---PRNLEWMRE-ANCPVVADVTH-S-LQQPAGKKL 137 (219)
Q Consensus 72 --~~ei~----~A~e~i~~~Gn~-~i~L~~cgs~~~~-~~~~~n---l~~i~~lk~-~~~pV~~ds~H-s-~~~~~~~~~ 137 (219)
++|+. +-++.+.+.|-+ +=+++.-|.-|+. .+.+-| |+.+..++. +++||.+-.|. + ++
T Consensus 144 dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l~~~~g~PvLvg~SRKsfig------- 216 (279)
T PRK13753 144 DALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKLKSALGLPLLVSVSRKSFLG------- 216 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHHHHhCCCceEEEccHhHHHH-------
Confidence 12222 234456777853 3456777776632 122234 455666765 79998763331 1 00
Q ss_pred CCCCccCCCCcccHHH-HHHHHHHcCCcEEEEeee
Q 027740 138 DGGGVASGGLRELIPC-IARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 138 ~~~~~~~~G~~~~~~~-~~~aAvalGA~GlvIEkH 171 (219)
+-.+. +...|..... +...|+..||+ +|=+|
T Consensus 217 ~~~~~-~~~~R~~~T~a~~~~a~~~Ga~--ivRvH 248 (279)
T PRK13753 217 ATVGL-PVKDLGPASLAAELHAIGNGAD--YVRTH 248 (279)
T ss_pred HHcCC-ChhhhhHhHHHHHHHHHHcCCC--EEEeC
Confidence 00011 1123332222 22345777998 99999
No 413
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=66.79 E-value=13 Score=34.62 Aligned_cols=85 Identities=15% Similarity=0.149 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCCeEe-eeCCcccHHHHhhh-ccccccCCCCCCC-------HHHHHHHH---hcCCeEEEeCCCCCCHH
Q 027740 6 KILEKVKIAYDIPIVT-DVHETVQCEEVGKV-ADIIQIPAFLCRQ-------TDLLVAAA---KTGKIINIKKGQFCASS 73 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~~~n-------~~LL~~~a---~~gkPVilstG~~~t~~ 73 (219)
+.++++++..++|++- ++++++++..+.+. ++.+.|+..-=+| .+.|.++. .-..||+++-|.- +-.
T Consensus 215 ~~i~~~~~~~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir-~g~ 293 (356)
T PF01070_consen 215 DDIEWIRKQWKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIR-RGL 293 (356)
T ss_dssp HHHHHHHHHCSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS---SHH
T ss_pred HHHHHHhcccCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCC-CHH
Confidence 4577888899999998 99999999999999 9999887443222 22233332 2358999999988 888
Q ss_pred HHHHHHHHHHHcCCCcEEEEeec
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cg 96 (219)
|+..|+. -|. +.+.+-|-
T Consensus 294 Dv~kala----LGA-~~v~igr~ 311 (356)
T PF01070_consen 294 DVAKALA----LGA-DAVGIGRP 311 (356)
T ss_dssp HHHHHHH----TT--SEEEESHH
T ss_pred HHHHHHH----cCC-CeEEEccH
Confidence 8877743 344 34444443
No 414
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=66.68 E-value=68 Score=27.39 Aligned_cols=89 Identities=6% Similarity=-0.022 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCC-----CC------
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF-----CA------ 71 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~-----~t------ 71 (219)
-+..+.+.+++.|..++....+.. -+.+... +|.+-+.+.+. +.+.++.+.+.+.|+++=-... ..
T Consensus 25 ~~~~i~~~~~~~gy~~~~~~~~~~-~~~l~~~~vdgiIi~~~~~-~~~~~~~l~~~~iPvV~i~~~~~~~~~~~~V~~d~ 102 (269)
T cd06287 25 VAAAAAESALERGLALCLVPPHEA-DSPLDALDIDGAILVEPMA-DDPQVARLRQRGIPVVSIGRPPGDRTDVPYVDLQS 102 (269)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCc-hhhhhccCcCeEEEecCCC-CCHHHHHHHHcCCCEEEeCCCCCCCCCCCeEeeCc
Confidence 467788999999999888666522 2445554 88666544333 4566777888899987542211 01
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEe
Q 027740 72 SSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 72 ~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
-+-...|++++.+.|.++|.++.
T Consensus 103 ~~~~~~a~~~L~~~G~~~I~~i~ 125 (269)
T cd06287 103 AATARMLLEHLRAQGARQIALIV 125 (269)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEe
Confidence 34457788899999999998886
No 415
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=66.66 E-value=1e+02 Score=28.03 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=29.8
Q ss_pred HHHHHHHHcCCc---EEEEeeecCCCCCCCCCCCCCChHHHHHHHHHH
Q 027740 153 CIARTAIAVGVD---GVFMEVHDDPLNAPVDGPTQWPLRNLEELLEEL 197 (219)
Q Consensus 153 ~~~~aAvalGA~---GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~i 197 (219)
.....+...||+ |.++|-|..++... .++..+++++|..+++++
T Consensus 285 ~~~~~~l~~Gan~~~g~~~~e~v~~~~g~-~~~~~~~~~~~~~~i~~~ 331 (343)
T TIGR03551 285 KLAQVALRCGANDLGGTLMEESISRAAGA-SHGEYLSPEELEAIIEDA 331 (343)
T ss_pred HHHHHHHhCCCccCCccceecccccccCC-CCCCCCCHHHHHHHHHHc
Confidence 334556666655 56788887766653 445568999998888764
No 416
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=66.62 E-value=60 Score=26.82 Aligned_cols=89 Identities=11% Similarity=-0.045 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcc---c---HHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCC-CC------C
Q 027740 5 LKILEKVKIAYDIPIVTDVHETV---Q---CEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKG-QF------C 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~---~---~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG-~~------~ 70 (219)
..-+.+++++.|..+.....+.. + ++.+.+. +|.+-|.+.+..+ .++++. ..+.||++-.. .. .
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-~~~~~~-~~~ipvv~~~~~~~~~~~~~v 95 (267)
T cd06284 18 LKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPP-TALTAL-AKLPPIVQACEYIPGLAVPSV 95 (267)
T ss_pred HHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHH-hcCCCEEEEecccCCCCcceE
Confidence 35577888899988765433321 1 1223333 7766665444333 244555 45999985321 10 0
Q ss_pred ---CHHHHHHHHHHHHHcCCCcEEEEee
Q 027740 71 ---ASSVMVNSAEKVRLAGNPNVMVCER 95 (219)
Q Consensus 71 ---t~~ei~~A~e~i~~~Gn~~i~L~~c 95 (219)
..+-...+++++.+.|..++.++..
T Consensus 96 ~~d~~~~g~~~~~~l~~~g~~~i~~l~~ 123 (267)
T cd06284 96 SIDNVAAARLAVDHLISLGHRRIALITG 123 (267)
T ss_pred EecccHHHHHHHHHHHHcCCceEEEEcC
Confidence 1344567888899999999998864
No 417
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=66.50 E-value=69 Score=25.99 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=59.7
Q ss_pred HHHHHHHHHhcCCCeEeeeCCccc---HHHH---hhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCC--------
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQ---CEEV---GKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF-------- 69 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~---~~~l---~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~-------- 69 (219)
+.-+++++++.|+.+......... .+.+ .+- +|.+-+.+.+......++.+-+.+.|+++=.+..
T Consensus 18 ~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~~~~~~~~~~~~ 97 (264)
T cd01537 18 LKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDIPDGDRVPS 97 (264)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhhhcCCCEEEeccCCCCCcccce
Confidence 456778888999988765554321 2222 222 6777666666665555777778899998632221
Q ss_pred C---CHHHHHHHHHHHHHcCCCcEEEEeec
Q 027740 70 C---ASSVMVNSAEKVRLAGNPNVMVCERG 96 (219)
Q Consensus 70 ~---t~~ei~~A~e~i~~~Gn~~i~L~~cg 96 (219)
. ..+....+++++...|..++.++.-.
T Consensus 98 v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~ 127 (264)
T cd01537 98 VGSDNEQAGYLAGEHLAEKGHRRIALLAGP 127 (264)
T ss_pred EecCcHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 1 13455677788888899999888653
No 418
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=66.38 E-value=59 Score=31.83 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCe-EEEeC---CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c----CCC
Q 027740 50 DLLVAAAKTGKI-INIKK---GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A----NCP 120 (219)
Q Consensus 50 ~LL~~~a~~gkP-Vilst---G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~----~~p 120 (219)
+.++++-..|.- |.+.- +.+ +++-+...++.+.+.|...|.|+..+... .|. ++ .+-+..+++ + ++|
T Consensus 213 ~~V~~Ak~~G~~~v~f~~EDa~Rt-d~efl~~~~~~a~~~Gad~I~l~DTvG~~-tP~-~v-~~lV~~l~~~~~~~~~i~ 288 (503)
T PLN03228 213 SSIRYAKSLGFHDIQFGCEDGGRS-DKEFLCKILGEAIKAGATSVGIADTVGIN-MPH-EF-GELVTYVKANTPGIDDIV 288 (503)
T ss_pred HHHHHHHHcCCceEEecccccccc-CHHHHHHHHHHHHhcCCCEEEEecCCCCC-CHH-HH-HHHHHHHHHHhccccCce
Confidence 455566666764 55544 233 56667777777888899888888866531 232 12 244566666 5 478
Q ss_pred EEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecC
Q 027740 121 VVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 121 V~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t 173 (219)
|.+ +.|-. .| +-..-+++|+..||+ .|+.-+.
T Consensus 289 I~~-H~HND---------------~G---lAvANslaAi~aGa~--~Vd~Tv~ 320 (503)
T PLN03228 289 FSV-HCHND---------------LG---LATANTIAGICAGAR--QVEVTIN 320 (503)
T ss_pred eEe-cccCC---------------cC---hHHHHHHHHHHhCCC--EEEEecc
Confidence 888 77752 13 224557899999999 8887544
No 419
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.38 E-value=89 Score=28.39 Aligned_cols=99 Identities=18% Similarity=0.120 Sum_probs=59.6
Q ss_pred HHHHHHHh-c--CCeEEEeCC------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCC-CCCC----------CCccch
Q 027740 50 DLLVAAAK-T--GKIINIKKG------QFCASSVMVNSAEKVRLAGNPNVMVCERGTMF-GYND----------LIVDPR 109 (219)
Q Consensus 50 ~LL~~~a~-~--gkPVilstG------~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~-~~~~----------~~~nl~ 109 (219)
+.++++-+ . +.||.++-. .+.+.+|....++.+...|-. .+=++.++.. ++.. .-.++.
T Consensus 204 EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd-~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~ 282 (338)
T cd04733 204 EIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVD-LVELSGGTYESPAMAGAKKESTIAREAYFLE 282 (338)
T ss_pred HHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCC-EEEecCCCCCCccccccccCCccccchhhHH
Confidence 45666654 2 468998764 234899999999989888853 3334444321 1110 001123
Q ss_pred hHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CcEEEEeee
Q 027740 110 NLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFMEVH 171 (219)
Q Consensus 110 ~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalG-A~GlvIEkH 171 (219)
....+|+ +++||+.+.+.. . ...+..+++.| +|++.+=+-
T Consensus 283 ~~~~ik~~v~iPVi~~G~i~-----------------t-----~~~a~~~l~~g~aD~V~lgR~ 324 (338)
T cd04733 283 FAEKIRKVTKTPLMVTGGFR-----------------T-----RAAMEQALASGAVDGIGLARP 324 (338)
T ss_pred HHHHHHHHcCCCEEEeCCCC-----------------C-----HHHHHHHHHcCCCCeeeeChH
Confidence 4456777 899998864443 2 45567778776 887666554
No 420
>PRK15447 putative protease; Provisional
Probab=66.34 E-value=49 Score=29.81 Aligned_cols=99 Identities=9% Similarity=-0.005 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhcCCCeEe-ee---CCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHH
Q 027740 3 EGLKILEKVKIAYDIPIVT-DV---HETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNS 78 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~t-t~---~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A 78 (219)
+.++...+++++.|..+.- +| +.+.+.+.+.++++. ....-.+.|...+..+.+.+.|+..++.+..+=. .+
T Consensus 48 ~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~-~~~~v~v~d~g~l~~~~e~~~~l~~d~~lni~N~---~a 123 (301)
T PRK15447 48 GDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVEN-GEFLVEANDLGAVRLLAERGLPFVAGPALNCYNA---AT 123 (301)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhc-CCCEEEEeCHHHHHHHHhcCCCEEEecccccCCH---HH
Confidence 4677888889999988755 32 234455555555443 1112336799888888878999999999873333 35
Q ss_pred HHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHH
Q 027740 79 AEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMR 115 (219)
Q Consensus 79 ~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk 115 (219)
++...+.|-..++|= .++++.-|..|+
T Consensus 124 ~~~l~~~G~~rv~ls----------~ELsl~eI~~i~ 150 (301)
T PRK15447 124 LALLARLGATRWCMP----------VELSRDWLANLL 150 (301)
T ss_pred HHHHHHcCCcEEEEC----------CcCCHHHHHHHH
Confidence 556666776554331 136666666664
No 421
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=66.20 E-value=68 Score=26.94 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcc---cHHHHhh---h-ccccccCCCCCCC-HHHHHHHHhcCCeEEEeCCCC------
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETV---QCEEVGK---V-ADIIQIPAFLCRQ-TDLLVAAAKTGKIINIKKGQF------ 69 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~---~~~~l~~---~-vd~~kI~S~~~~n-~~LL~~~a~~gkPVilstG~~------ 69 (219)
-++-+.+.|+++|+.++....+.. +.+.+.. . +|.+-|.+.+... .+.++.+.+.+.||++-....
T Consensus 17 ~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~~~~~~~~~ 96 (273)
T cd06309 17 ETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVDRGVDVKDDS 96 (273)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEEecCcCCccCc
Confidence 356788999999999888654321 2222322 2 7777676655432 577888888899987654311
Q ss_pred -----C---CHHHHHHHHHHHHHc--CCCcEEEEee
Q 027740 70 -----C---ASSVMVNSAEKVRLA--GNPNVMVCER 95 (219)
Q Consensus 70 -----~---t~~ei~~A~e~i~~~--Gn~~i~L~~c 95 (219)
. ...-...+++++.+. |..++.++..
T Consensus 97 ~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~ 132 (273)
T cd06309 97 LYVTFIGSDFVEEGRRAADWLAKATGGKGNIVELQG 132 (273)
T ss_pred ceeeEecCChHHHHHHHHHHHHHHcCCCceEEEEeC
Confidence 0 112224567778777 8888888853
No 422
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=66.15 E-value=15 Score=32.53 Aligned_cols=161 Identities=18% Similarity=0.138 Sum_probs=88.9
Q ss_pred CeEeeeCCcccHHHHhhh-ccccc--cCCC---CCCCHHHHHHHHhc---CCeEEEeCCCCC-CHHHHHHHHHHHHHcCC
Q 027740 18 PIVTDVHETVQCEEVGKV-ADIIQ--IPAF---LCRQTDLLVAAAKT---GKIINIKKGQFC-ASSVMVNSAEKVRLAGN 87 (219)
Q Consensus 18 ~~~tt~~d~~~~~~l~~~-vd~~k--I~S~---~~~n~~LL~~~a~~---gkPVilstG~~~-t~~ei~~A~e~i~~~Gn 87 (219)
..+.+|.+.+......+- +|++- =|+. =......++++-.. .+||=---|-.. .+..+..|+.-....|.
T Consensus 2 ~lLvSv~~~~EA~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~Gv 81 (235)
T PF04476_consen 2 KLLVSVRNVEEAEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGV 81 (235)
T ss_pred ceeecCCCHHHHHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCC
Confidence 456777787777776654 66643 2332 12234444444442 367655555432 34555555555555676
Q ss_pred CcEEEEeecCCCCCCCCCcc---chhH-HHHHhcC-----CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHH
Q 027740 88 PNVMVCERGTMFGYNDLIVD---PRNL-EWMREAN-----CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTA 158 (219)
Q Consensus 88 ~~i~L~~cgs~~~~~~~~~n---l~~i-~~lk~~~-----~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aA 158 (219)
..+=+---+ ..+.+-. |+++ ..+|.++ +.|+| +|+... +.... ..+...+
T Consensus 82 dyvKvGl~g----~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~y-AD~~r~--------------~~~~p--~~l~~~a 140 (235)
T PF04476_consen 82 DYVKVGLFG----CKDYDEAIEALEAVVRAVKDFDPDKKVVAVGY-ADAQRV--------------GSISP--LDLPEIA 140 (235)
T ss_pred CEEEEecCC----CCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEe-cchhhh--------------cCCCH--HHHHHHH
Confidence 644333322 2211111 2222 2233321 35666 776410 01000 3455678
Q ss_pred HHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 027740 159 IAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAIAK 202 (219)
Q Consensus 159 valGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i~~ 202 (219)
...|++|+||..-.---+.+-|| +++++|+++++..|..--
T Consensus 141 ~~aG~~gvMlDTa~Kdg~~L~d~---~~~~~L~~Fv~~ar~~gL 181 (235)
T PF04476_consen 141 AEAGFDGVMLDTADKDGGSLFDH---LSEEELAEFVAQARAHGL 181 (235)
T ss_pred HHcCCCEEEEecccCCCCchhhc---CCHHHHHHHHHHHHHccc
Confidence 89999999998775555666787 789999999999987644
No 423
>PTZ00066 pyruvate kinase; Provisional
Probab=66.05 E-value=52 Score=32.35 Aligned_cols=99 Identities=12% Similarity=0.078 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHhcC--CCeEeeeCCcccHHHHhhh---ccccccCCCCCC-----------CHHHHHHHHhcCCeEEEeC
Q 027740 3 EGLKILEKVKIAYD--IPIVTDVHETVQCEEVGKV---ADIIQIPAFLCR-----------QTDLLVAAAKTGKIINIKK 66 (219)
Q Consensus 3 ~gl~~L~~~~~~~G--i~~~tt~~d~~~~~~l~~~---vd~~kI~S~~~~-----------n~~LL~~~a~~gkPVilst 66 (219)
+-+..++++.++.| +.+++-+-.++.++-+.+. .|.+-|+=+|+- |-.+++.+-+.|||||+.|
T Consensus 236 ~DI~~~r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvAT 315 (513)
T PTZ00066 236 DDVRLCRQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITAT 315 (513)
T ss_pred HHHHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEec
Confidence 34677888888775 7889988888887777664 888888887654 4566777788899999977
Q ss_pred CC--------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Q 027740 67 GQ--------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN 102 (219)
Q Consensus 67 G~--------~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~ 102 (219)
-| ..|-.|+-..+..+.. |..-++|-.-++.=.||
T Consensus 316 QmLeSMi~np~PTRAEvsDVaNAV~D-G~DavMLSgETA~G~yP 358 (513)
T PTZ00066 316 QMLESMIKNPRPTRAESTDVANAVLD-GTDCVMLSGETANGKFP 358 (513)
T ss_pred hhHHHHhhCCCCchHHHHHHHHHHHh-CCcEEEecchhcCCcCH
Confidence 55 3366777777777764 66666665554432455
No 424
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=66.00 E-value=89 Score=28.83 Aligned_cols=55 Identities=13% Similarity=0.022 Sum_probs=35.3
Q ss_pred cccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcE
Q 027740 26 TVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNV 90 (219)
Q Consensus 26 ~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i 90 (219)
.++++.+.+. ++++-++.+.-.. .+.+-..|..|+...+ |+++...+. ..|..-+
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~---~~~lk~~Gi~v~~~v~---s~~~A~~a~----~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQ---ARALEAIGISTYLHVP---SPGLLKQFL----ENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHH---HHHHHHCCCEEEEEeC---CHHHHHHHH----HcCCCEE
Confidence 4577777777 8888777654433 3555567888886665 777765543 4566433
No 425
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=65.95 E-value=73 Score=28.11 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh--c-CCCEEEcCCCCCCCCCCCccCCCCccCCCC
Q 027740 71 ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--A-NCPVVADVTHSLQQPAGKKLDGGGVASGGL 147 (219)
Q Consensus 71 t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~--~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~ 147 (219)
+.+.+..-++++.+.|.+-++++-.+..+.+=..+--.+.+....+ - .+||+.-..+. ..
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~-----------------s~ 79 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSN-----------------AT 79 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCc-----------------cH
Confidence 6777777788877788777665443333211110001122333322 1 36665532221 11
Q ss_pred cccHHHHHHHHHHcCCcEEEE
Q 027740 148 RELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 148 ~~~~~~~~~aAvalGA~GlvI 168 (219)
++ ....++.|..+||||+++
T Consensus 80 ~~-~i~~a~~a~~~Gad~v~v 99 (285)
T TIGR00674 80 EE-AISLTKFAEDVGADGFLV 99 (285)
T ss_pred HH-HHHHHHHHHHcCCCEEEE
Confidence 11 234567778888888777
No 426
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=65.90 E-value=59 Score=27.68 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCCeEeeeCCc--ccHHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEe-CCCC-----C---CH
Q 027740 5 LKILEKVKIAYDIPIVTDVHET--VQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIK-KGQF-----C---AS 72 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~--~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVils-tG~~-----~---t~ 72 (219)
+.-+.+.+++.|..++....+. ..++.+.+. +|.+-+-+.+ .+.+.++.+-+.++||++= +... . ..
T Consensus 23 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~-~~~~~~~~~~~~~ipvV~~~~~~~~~~~~v~~d~~ 101 (283)
T cd06279 23 LAGVAEVLDAAGVNLLLLPASSEDSDSALVVSALVDGFIVYGVP-RDDPLVAALLRRGLPVVVVDQPLPPGVPSVGIDDR 101 (283)
T ss_pred HHHHHHHHHHCCCEEEEecCccHHHHHHHHHhcCCCEEEEeCCC-CChHHHHHHHHcCCCEEEEecCCCCCCCEEeeCcH
Confidence 4556789999998877644432 334444444 7766665443 3457788887889998743 2211 0 24
Q ss_pred HHHHHHHHHHHHcCCCcEEEEe
Q 027740 73 SVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 73 ~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
+-...+++++.+.|..++.++-
T Consensus 102 ~~g~~~~~~L~~~g~~~i~~i~ 123 (283)
T cd06279 102 AAAREAARHLLDLGHRRIGILG 123 (283)
T ss_pred HHHHHHHHHHHHcCCCcEEEec
Confidence 4566678889999999988774
No 427
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=65.64 E-value=56 Score=32.48 Aligned_cols=71 Identities=20% Similarity=0.120 Sum_probs=39.9
Q ss_pred HHHHHHHhcC-CeEEEeC-----CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEE
Q 027740 50 DLLVAAAKTG-KIINIKK-----GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVV 122 (219)
Q Consensus 50 ~LL~~~a~~g-kPVilst-----G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~ 122 (219)
..++++.+.+ +|+++|- |...+=..+..+++.+...| ...+.+-|++. | ..+ ...+..++. .+.|++
T Consensus 155 a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~~~~~~~-~~avGiNC~~~---p-~~~-~~~l~~l~~~~~~pl~ 228 (612)
T PRK08645 155 LALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALKELVAAG-ADVVGLNCGLG---P-YHM-LEALERIPIPENAPLS 228 (612)
T ss_pred HHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHHHHHhCC-CCEEEecCCCC---H-HHH-HHHHHHHHhccCceEE
Confidence 3444454454 8887762 21112234556666665555 57888888642 1 112 356666666 578888
Q ss_pred EcCC
Q 027740 123 ADVT 126 (219)
Q Consensus 123 ~ds~ 126 (219)
+.|.
T Consensus 229 vypN 232 (612)
T PRK08645 229 AYPN 232 (612)
T ss_pred EEEC
Confidence 7554
No 428
>PTZ00378 hypothetical protein; Provisional
Probab=65.57 E-value=36 Score=33.49 Aligned_cols=92 Identities=14% Similarity=0.062 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcC--CCeEeeeCCcccHHHHhhh---c-cccccCCCC--CC-CHHHHHHHHhcC--CeEEEeCCCCCCHH
Q 027740 5 LKILEKVKIAYD--IPIVTDVHETVQCEEVGKV---A-DIIQIPAFL--CR-QTDLLVAAAKTG--KIINIKKGQFCASS 73 (219)
Q Consensus 5 l~~L~~~~~~~G--i~~~tt~~d~~~~~~l~~~---v-d~~kI~S~~--~~-n~~LL~~~a~~g--kPVilstG~~~t~~ 73 (219)
+..+++.++++. |.++=++|++++-+-..++ + +-++|-..| ++ |...++..-..+ --++||-.+-+|+.
T Consensus 332 ieyy~~li~kYP~iIvsIEDp~~E~D~~gw~~lt~~lG~~iqivGDDL~vT~n~~ri~~gi~~~~~NaiLIK~NQIGTlS 411 (518)
T PTZ00378 332 SEYVREQLQAVPDIVVYVEDTHCDEDTFGLQRLQAALGDSIVLSGVDVYARSEYKKVESGLRGLWTSNIVLNPCAIGTLS 411 (518)
T ss_pred HHHHHHHHHHCCCceEEEecCCCchHHHHHHHHHHHhCCeEEEECCCcCcCCCHHHHHHHHhcCCCceEEEccccceeHH
Confidence 567788899998 7788899999998877766 2 345666654 45 688888765543 57999999999999
Q ss_pred HHHHHHHHHHHcCCCcE--EEEeec
Q 027740 74 VMVNSAEKVRLAGNPNV--MVCERG 96 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i--~L~~cg 96 (219)
|..++++..++.|-.-+ ++-||.
T Consensus 412 Etieav~lA~~~g~~~v~v~vShRS 436 (518)
T PTZ00378 412 DVVEIVRAVGEDEGRAVTVLVQTLA 436 (518)
T ss_pred HHHHHHHHHHHcCCcEEccccCCCc
Confidence 99999999998875322 266653
No 429
>PLN02334 ribulose-phosphate 3-epimerase
Probab=65.53 E-value=86 Score=26.75 Aligned_cols=136 Identities=18% Similarity=0.122 Sum_probs=71.4
Q ss_pred HHHHHHHHhc-CCCeEeeeCCcc-cHHHHhhh-cccc--ccC-CCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHH
Q 027740 6 KILEKVKIAY-DIPIVTDVHETV-QCEEVGKV-ADII--QIP-AFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSA 79 (219)
Q Consensus 6 ~~L~~~~~~~-Gi~~~tt~~d~~-~~~~l~~~-vd~~--kI~-S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~ 79 (219)
+.|+++++.. ++.+++. ++. .++.+.+. +|.+ -++ +.+-.-...++.+-+.|+-+.++.... |+.|...+
T Consensus 58 ~~l~~~~~~~~~vhlmv~--~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~-t~~~~~~~- 133 (229)
T PLN02334 58 KALRKHTDAPLDCHLMVT--NPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPG-TPVEAVEP- 133 (229)
T ss_pred HHHHhcCCCcEEEEeccC--CHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCC-CCHHHHHH-
Confidence 3444444443 5555543 222 34444455 7776 444 112223456777777788888888765 55554332
Q ss_pred HHHHHcC-CCcEEEEeecCCCCCCC-CCc---cchhHHHHHh--cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHH
Q 027740 80 EKVRLAG-NPNVMVCERGTMFGYND-LIV---DPRNLEWMRE--ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIP 152 (219)
Q Consensus 80 e~i~~~G-n~~i~L~~cgs~~~~~~-~~~---nl~~i~~lk~--~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~ 152 (219)
+...| ...+.++ +.||... ... .+..+..+++ .++||.+| ||.. .
T Consensus 134 --~~~~~~~Dyi~~~---~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a~--------------------GGI~---~ 185 (229)
T PLN02334 134 --VVEKGLVDMVLVM---SVEPGFGGQSFIPSMMDKVRALRKKYPELDIEVD--------------------GGVG---P 185 (229)
T ss_pred --HHhccCCCEEEEE---EEecCCCccccCHHHHHHHHHHHHhCCCCcEEEe--------------------CCCC---H
Confidence 23332 5545443 2222111 112 2344555555 25788775 2322 3
Q ss_pred HHHHHHHHcCCcEEEEeeecC
Q 027740 153 CIARTAIAVGVDGVFMEVHDD 173 (219)
Q Consensus 153 ~~~~aAvalGA~GlvIEkH~t 173 (219)
.-.....+.||+|+++=+-++
T Consensus 186 e~i~~l~~aGad~vvvgsai~ 206 (229)
T PLN02334 186 STIDKAAEAGANVIVAGSAVF 206 (229)
T ss_pred HHHHHHHHcCCCEEEEChHHh
Confidence 344567899999998887654
No 430
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=65.40 E-value=64 Score=27.04 Aligned_cols=90 Identities=12% Similarity=0.034 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCCCeEeeeC--Ccc----cHHHHhhh-ccccccCCCCC----CCHHHHHHHHhcCCeEEEeCCCCC---
Q 027740 5 LKILEKVKIAYDIPIVTDVH--ETV----QCEEVGKV-ADIIQIPAFLC----RQTDLLVAAAKTGKIINIKKGQFC--- 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~--d~~----~~~~l~~~-vd~~kI~S~~~----~n~~LL~~~a~~gkPVilstG~~~--- 70 (219)
+..+.+.++++|+.++.... ++. .++.+.+. +|.+-+.+..- .+.+.++.+-+.+.||++-.....
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~~~~~ 97 (273)
T cd01541 18 IRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFINASYEELN 97 (273)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEEecCCCCCC
Confidence 45567889999999887543 221 22233333 77766654321 245778888788999886542110
Q ss_pred -------CHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 71 -------ASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 71 -------t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
...-...+++++.+.|..++.++.
T Consensus 98 ~~~V~~D~~~~g~~~~~~l~~~G~~~i~~l~ 128 (273)
T cd01541 98 FPSLVLDDEKGGYKATEYLIELGHRKIAGIF 128 (273)
T ss_pred CCEEEECcHHHHHHHHHHHHHcCCcCEEEec
Confidence 123446677888899999988764
No 431
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=65.38 E-value=74 Score=26.79 Aligned_cols=88 Identities=11% Similarity=-0.013 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCC-------C---CHHH
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF-------C---ASSV 74 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~-------~---t~~e 74 (219)
+.-+.++|++.|+.+.....+... .....-+|.+-+-+.. +.+.++.+.+.++||++=.-.. . ..+-
T Consensus 23 ~~gi~~~~~~~g~~~~~~~~~~~~-~~~~~~vdgii~~~~~--~~~~~~~~~~~~~pvV~~~~~~~~~~~~~v~~D~~~a 99 (270)
T cd01544 23 RLGIEKRAQELGIELTKFFRDDDL-LEILEDVDGIIAIGKF--SQEQLAKLAKLNPNLVFVDSNPAPDGFDSVVPDFEQA 99 (270)
T ss_pred HHHHHHHHHHcCCEEEEEeccchh-HHhccCcCEEEEecCC--CHHHHHHHHhhCCCEEEECCCCCCCCCCEEEECHHHH
Confidence 456788899999887775554322 2233337755543321 3377888888899987753211 0 1344
Q ss_pred HHHHHHHHHHcCCCcEEEEee
Q 027740 75 MVNSAEKVRLAGNPNVMVCER 95 (219)
Q Consensus 75 i~~A~e~i~~~Gn~~i~L~~c 95 (219)
...+++++.+.|.+++.++-.
T Consensus 100 ~~~~~~~l~~~g~~~i~~i~~ 120 (270)
T cd01544 100 VEKALDYLLELGHTRIGFIGG 120 (270)
T ss_pred HHHHHHHHHHcCCCcEEEECC
Confidence 566888899999999988753
No 432
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=65.33 E-value=72 Score=26.42 Aligned_cols=89 Identities=7% Similarity=0.021 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCCeEeeeC--Ccc-cHHHHh---hh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCC----------
Q 027740 5 LKILEKVKIAYDIPIVTDVH--ETV-QCEEVG---KV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKG---------- 67 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~--d~~-~~~~l~---~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG---------- 67 (219)
+.-+.+++++.|..++.... +++ +.+.+. +. +|.+-|-+.. .+.+.++.+.+.+.|+++=..
T Consensus 18 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~-~~~~~~~~l~~~~ipvV~~~~~~~~~~~~~v 96 (268)
T cd06298 18 ARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGK-ISEEHREEFKRSPTPVVLAGSVDEDNELPSV 96 (268)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCC-CcHHHHHHHhcCCCCEEEEccccCCCCCCEE
Confidence 34566778888887665433 232 222232 33 7766665433 245778888888999986321
Q ss_pred -CCCCHHHHHHHHHHHHHcCCCcEEEEee
Q 027740 68 -QFCASSVMVNSAEKVRLAGNPNVMVCER 95 (219)
Q Consensus 68 -~~~t~~ei~~A~e~i~~~Gn~~i~L~~c 95 (219)
.. ..+-...+++++.+.|..+|.++..
T Consensus 97 ~~d-~~~~~~~~~~~l~~~g~~~i~~l~~ 124 (268)
T cd06298 97 NID-YKKAAFEATELLIKNGHKKIAFISG 124 (268)
T ss_pred EEC-cHHHHHHHHHHHHHcCCceEEEEeC
Confidence 11 2355567888899899999988863
No 433
>PRK14847 hypothetical protein; Provisional
Probab=65.26 E-value=95 Score=28.80 Aligned_cols=145 Identities=9% Similarity=-0.016 Sum_probs=86.5
Q ss_pred HHHhhh-ccccccCCCCCCC--HHHHHHHHhcCC---eE-EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC----
Q 027740 30 EEVGKV-ADIIQIPAFLCRQ--TDLLVAAAKTGK---II-NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM---- 98 (219)
Q Consensus 30 ~~l~~~-vd~~kI~S~~~~n--~~LL~~~a~~gk---PV-ilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~---- 98 (219)
..|.++ +|.+-+|.--+.+ .+.++++++.+. ++ +..=.-+ ..++|+.+++.....++..|++.-.+|.
T Consensus 61 ~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~-~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~ 139 (333)
T PRK14847 61 EQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEALTQS-RPDLIARTFEALAGSPRAIVHLYNPIAPQWRR 139 (333)
T ss_pred HHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEEEecC-cHHHHHHHHHHhCCCCCCEEEEEecCCHHHHH
Confidence 345566 8888777665554 556888888763 33 3333333 7899999999888777778888877763
Q ss_pred --CCCCCCCc-c--chhHHHHHhc-----CC--CEEE---cCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHH-HcC
Q 027740 99 --FGYNDLIV-D--PRNLEWMREA-----NC--PVVA---DVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAI-AVG 162 (219)
Q Consensus 99 --~~~~~~~~-n--l~~i~~lk~~-----~~--pV~~---ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAv-alG 162 (219)
++...+++ + ..++...|+. ++ .|-| |.+-+ ..+++..++.++. ++|
T Consensus 140 ~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRa------------------d~dfL~~~~~~a~~~~g 201 (333)
T PRK14847 140 IVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLA------------------ELDFAREVCDAVSAIWG 201 (333)
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCC------------------CHHHHHHHHHHHHHHhC
Confidence 23222111 1 1122333433 22 4555 33322 2456777777664 447
Q ss_pred CcEEEEeeecCCC-CCCCCCCCCCChHHHHHHHHHHHH
Q 027740 163 VDGVFMEVHDDPL-NAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 163 A~GlvIEkH~t~d-~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
|+ -.- -+ -+++|---.++|.++.++++.+++
T Consensus 202 a~--r~~----a~~i~l~DTVG~~~P~~~~~~i~~l~~ 233 (333)
T PRK14847 202 PT--PQR----KMIINLPATVESSTANVYADQIEWMHR 233 (333)
T ss_pred CC--ccC----CcEEEeCCccccCCHHHHHHHHHHHHH
Confidence 64 000 00 025788899999999999888763
No 434
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=65.20 E-value=1.3e+02 Score=28.77 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCcEEEEeee
Q 027740 152 PCIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 152 ~~~~~aAvalGA~GlvIEkH 171 (219)
.....+|.++||+|+.+=+=
T Consensus 231 g~~vaAA~alGAd~V~~GT~ 250 (418)
T cd04742 231 PEAAAAAFALGADFIVTGSI 250 (418)
T ss_pred HHHHHHHHHcCCcEEeeccH
Confidence 34556899999999887543
No 435
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=65.18 E-value=23 Score=27.01 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=48.2
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHH-HHhcCCeEEEeC
Q 027740 5 LKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVA-AAKTGKIINIKK 66 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~-~a~~gkPVilst 66 (219)
-+.+++++++.|+++-.+.+...+++...+-.|++-++.---...+=+++ ++..|+||.+=.
T Consensus 17 a~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 17 ANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred HHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 36789999999999998888888877665557888888766666655555 445789998877
No 436
>PLN02417 dihydrodipicolinate synthase
Probab=65.10 E-value=78 Score=28.02 Aligned_cols=101 Identities=11% Similarity=0.011 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCcc--chhHHHHHh---cCCCEEEcCCCCCCCCCCCccCCCCccC
Q 027740 70 CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVD--PRNLEWMRE---ANCPVVADVTHSLQQPAGKKLDGGGVAS 144 (219)
Q Consensus 70 ~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~n--l~~i~~lk~---~~~pV~~ds~Hs~~~~~~~~~~~~~~~~ 144 (219)
.+.+.+..=++++.+.|.+-|+++=....+.. .+.+ .+.+....+ -.+||+.-..+.
T Consensus 19 iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~--ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~---------------- 80 (280)
T PLN02417 19 FDLEAYDSLVNMQIENGAEGLIVGGTTGEGQL--MSWDEHIMLIGHTVNCFGGKIKVIGNTGSN---------------- 80 (280)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECccCcchhh--CCHHHHHHHHHHHHHHhCCCCcEEEECCCc----------------
Confidence 37788888888888899887766554444321 1111 122333333 247887644443
Q ss_pred CCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 145 GGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 145 ~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
.-++ ....++.|.++||||+++--- ..+..+.+++.+..+.+.+
T Consensus 81 -~t~~-~i~~a~~a~~~Gadav~~~~P---------~y~~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 81 -STRE-AIHATEQGFAVGMHAALHINP---------YYGKTSQEGLIKHFETVLD 124 (280)
T ss_pred -cHHH-HHHHHHHHHHcCCCEEEEcCC---------ccCCCCHHHHHHHHHHHHh
Confidence 1122 245677889999999888432 1223345566555554433
No 437
>KOG2670 consensus Enolase [Carbohydrate transport and metabolism]
Probab=65.04 E-value=42 Score=31.53 Aligned_cols=90 Identities=21% Similarity=0.180 Sum_probs=68.9
Q ss_pred HHHHHHHhcCCCeEeeeCCcccHHHHhhh--ccccccCCCCCC--CHHHHHHHHhcC--CeEEEeCCCCCCHHHHHHHHH
Q 027740 7 ILEKVKIAYDIPIVTDVHETVQCEEVGKV--ADIIQIPAFLCR--QTDLLVAAAKTG--KIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 7 ~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~--vd~~kI~S~~~~--n~~LL~~~a~~g--kPVilstG~~~t~~ei~~A~e 80 (219)
..++.++++-+.-+-+|||.++-+.-..+ .--+||=..|++ |...++.+.... --++||-.+-+|+.|-.+|+.
T Consensus 281 lY~~~~k~yPivSiEDPFdqdDw~~w~~~~~~~~iqiVgDDLtvTnpkri~~Ai~~k~cN~LLlKvNQIGtvtEsiea~~ 360 (433)
T KOG2670|consen 281 LYKSFIKDYPIVSIEDPFDQDDWEAWSKFFKEVGIQIVGDDLTVTNPKRIATAIEEKACNALLLKVNQIGTVTESIEAAK 360 (433)
T ss_pred HHHHHHhcCCeeeecCCcchhhHHHHHHHhhccceEEecCcccccCHHHHHHHHHHhhccceEeeccccccHHHHHHHHH
Confidence 44677888988777799999998876664 445677666554 877666555432 269999999999999999999
Q ss_pred HHHHcCCCcEEEEeecC
Q 027740 81 KVRLAGNPNVMVCERGT 97 (219)
Q Consensus 81 ~i~~~Gn~~i~L~~cgs 97 (219)
.-++.|- -+++-||..
T Consensus 361 ~a~~~gw-gvmvSHRSG 376 (433)
T KOG2670|consen 361 LARSAGW-GVMVSHRSG 376 (433)
T ss_pred HHHhcCc-eEEEeccCC
Confidence 8888776 488999944
No 438
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=64.96 E-value=80 Score=27.87 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh--c-CCCEEEcCCCCCCCCCCCccCCCCccCCC
Q 027740 70 CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE--A-NCPVVADVTHSLQQPAGKKLDGGGVASGG 146 (219)
Q Consensus 70 ~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~--~-~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G 146 (219)
.+.+....-++++.+.|.+-++++-....+.+=..+=-.+.+..+.+ . .+||+.-..+. .
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~-----------------~ 81 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSN-----------------S 81 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCc-----------------h
Confidence 36777778888888888876665433222211110001223333333 2 36765422221 1
Q ss_pred CcccHHHHHHHHHHcCCcEEEE
Q 027740 147 LRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 147 ~~~~~~~~~~aAvalGA~GlvI 168 (219)
.++ ....++.|..+||||+++
T Consensus 82 ~~~-~i~~a~~a~~~G~d~v~~ 102 (292)
T PRK03170 82 TAE-AIELTKFAEKAGADGALV 102 (292)
T ss_pred HHH-HHHHHHHHHHcCCCEEEE
Confidence 111 234567778888888777
No 439
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=64.90 E-value=1.1e+02 Score=29.12 Aligned_cols=168 Identities=17% Similarity=0.159 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcc---cHHHHhhh--------ccccccCCCCCCCHH--------------HHHHHHhc
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETV---QCEEVGKV--------ADIIQIPAFLCRQTD--------------LLVAAAKT 58 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~---~~~~l~~~--------vd~~kI~S~~~~n~~--------------LL~~~a~~ 58 (219)
|+.-+++.+...|=|++.+++-|. +.+.++++ +|++|=-- .+.|++ +-++-.+|
T Consensus 119 Gi~GiR~~lgv~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGiD~IKDDE-~l~~q~~~p~~eRv~~~~~a~~~a~~eT 197 (414)
T cd08206 119 GIQGEREILGKYGRPLLGTIVKPKLGLSPKEYARVVYEALRGGLDFVKDDE-NQNSQPFMRFEDRILFVAEAMDKAEAET 197 (414)
T ss_pred CchhHHHHhCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcccccCc-cCCCCCCCcHHHHHHHHHHHHHHHHHhh
Confidence 566677777778889999998883 44444443 34444222 233321 22344568
Q ss_pred CCeEEEeCCCCCC-HHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh----cCCCEEEcCC-CCCCCC
Q 027740 59 GKIINIKKGQFCA-SSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE----ANCPVVADVT-HSLQQP 132 (219)
Q Consensus 59 gkPVilstG~~~t-~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~----~~~pV~~ds~-Hs~~~~ 132 (219)
|+..+..-...+. .+|+.+=++++++.|.+ +++.+...+ -+.++..|++ +++||.+=+. |..-.+
T Consensus 198 G~~~~y~~NiT~~~~~em~~ra~~~~~~G~~--~~mv~~~~~-------G~~~l~~l~~~~~~~~l~ih~HrA~~ga~~~ 268 (414)
T cd08206 198 GEAKGHYLNITADTPEEMIKRAEFAKELGSV--IVMVDGVTA-------GWTAIQSARRWCPDNGLALHAHRAGHAAFTR 268 (414)
T ss_pred CCcceEEeccCCCcHHHHHHHHHHHHHhCCc--EEEEeeecc-------cHHHHHHHHHhccccCeEEEEccccceeccc
Confidence 9988887777766 99999999999999974 344443332 3455667765 3577654111 110000
Q ss_pred CCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 027740 133 AGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVAI 200 (219)
Q Consensus 133 ~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~i 200 (219)
++ .-|... .......--+|||.+.+=. .-+++..++++..++.+.++.-
T Consensus 269 --------~~-~~Gis~--~vl~kl~RLaGaD~ih~~t--------~~Gk~~~~~~~~~~~~~~l~~~ 317 (414)
T cd08206 269 --------QK-NHGISM--RVLAKLARLIGVDHIHTGT--------VVGKLEGDPSEVKGIADMLRED 317 (414)
T ss_pred --------CC-CCcCcH--HHHHHHHHHcCCCccccCC--------CccCCCCCHHHHHHHHHHhhcc
Confidence 00 013322 2356667788999543321 2477888888999888887763
No 440
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=64.86 E-value=56 Score=30.28 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCCeEeeeCCcc---------------------cHHHHhh--h-cccccc----------C--CCCC--
Q 027740 5 LKILEKVKIAYDIPIVTDVHETV---------------------QCEEVGK--V-ADIIQI----------P--AFLC-- 46 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~~---------------------~~~~l~~--~-vd~~kI----------~--S~~~-- 46 (219)
++.+-+.|+..||+|+-|+.... .+..+.+ + +|.||+ | +.+.
T Consensus 144 vervg~eC~a~dipf~lE~ltY~~~~~d~~~~~yak~kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~y 223 (324)
T PRK12399 144 IERIGSECVAEDIPFFLEILTYDEKIADNGSVEYAKVKPHKVNEAMKVFSKPRFGVDVLKVEVPVNMKYVEGFAEGEVVY 223 (324)
T ss_pred HHHHHHHHHHCCCCeEEEEeeccCcccccccHHHHhhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccc
Confidence 45666789999999999854422 2334433 6 999999 2 2111
Q ss_pred CCH----HHHHHHHhcCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCC-cEEEEeecC
Q 027740 47 RQT----DLLVAAAKTGKI-INIKKGQFCASSVMVNSAEKVRLAGNP-NVMVCERGT 97 (219)
Q Consensus 47 ~n~----~LL~~~a~~gkP-VilstG~~~t~~ei~~A~e~i~~~Gn~-~i~L~~cgs 97 (219)
+.- .+-+....+++| |+||.|.+ .+.+.+.++.-.+.|.+ +=+||=|.+
T Consensus 224 t~~eA~~~f~~~~~~~~~P~i~LSaGV~--~~~F~~~l~~A~~aGa~fsGvL~GRAt 278 (324)
T PRK12399 224 TKEEAAQHFKEQDAATHLPYIYLSAGVS--AELFQETLVFAHEAGAKFNGVLCGRAT 278 (324)
T ss_pred cHHHHHHHHHHHhhccCCCEEEEcCCCC--HHHHHHHHHHHHHcCCCcceEEeehhh
Confidence 111 222233336777 66788865 88999999988888876 678888866
No 441
>PLN02979 glycolate oxidase
Probab=64.74 E-value=35 Score=32.10 Aligned_cols=71 Identities=14% Similarity=0.097 Sum_probs=49.2
Q ss_pred HHHHHHhcCCCeEe-eeCCcccHHHHhhh-ccccccCCCCCCC-------HHHHHHHHh---cCCeEEEeCCCCCCHHHH
Q 027740 8 LEKVKIAYDIPIVT-DVHETVQCEEVGKV-ADIIQIPAFLCRQ-------TDLLVAAAK---TGKIINIKKGQFCASSVM 75 (219)
Q Consensus 8 L~~~~~~~Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~~~n-------~~LL~~~a~---~gkPVilstG~~~t~~ei 75 (219)
++.+++..++|++. .+.+.+++..+.+. +|.+.|+..--+| ...|.++.+ ...||+++-|.. +-.|+
T Consensus 215 l~wlr~~~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr-~G~Di 293 (366)
T PLN02979 215 VQWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVR-RGTDV 293 (366)
T ss_pred HHHHHhccCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcC-cHHHH
Confidence 44444567899888 88999999999998 9998887766555 334444432 236777777777 66666
Q ss_pred HHHH
Q 027740 76 VNSA 79 (219)
Q Consensus 76 ~~A~ 79 (219)
..|+
T Consensus 294 ~KAL 297 (366)
T PLN02979 294 FKAL 297 (366)
T ss_pred HHHH
Confidence 6654
No 442
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=64.57 E-value=96 Score=26.96 Aligned_cols=90 Identities=10% Similarity=0.065 Sum_probs=57.1
Q ss_pred HHHHHHHHHhcCCCeEeeeCC--ccc----HHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCC-----C--
Q 027740 5 LKILEKVKIAYDIPIVTDVHE--TVQ----CEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF-----C-- 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d--~~~----~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~-----~-- 70 (219)
+..+.+.+++.|..++....+ +.. ++.+.+. +|.+-+.+....+.+.++.+.+.+.||++=.... .
T Consensus 79 ~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V 158 (327)
T TIGR02417 79 AKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQNEGLPVVALDRSLDDEHFCSV 158 (327)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHhcCCCEEEEccccCCCCCCEE
Confidence 456778889999987664433 221 2223333 7766665544335677888888899998543211 0
Q ss_pred ---CHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 71 ---ASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 71 ---t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
...-...+++++.+.|..+|.++.
T Consensus 159 ~~dn~~~~~~~~~~L~~~G~~~I~~i~ 185 (327)
T TIGR02417 159 ISDDVDAAAELIERLLSQHADEFWYLG 185 (327)
T ss_pred EeCcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 123456678889999999998874
No 443
>PLN02762 pyruvate kinase complex alpha subunit
Probab=64.50 E-value=61 Score=31.84 Aligned_cols=99 Identities=14% Similarity=0.137 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHhcC----CCeEeeeCCcccHHHHhhh---ccccccCCCCCC-----------CHHHHHHHHhcCCeEEE
Q 027740 3 EGLKILEKVKIAYD----IPIVTDVHETVQCEEVGKV---ADIIQIPAFLCR-----------QTDLLVAAAKTGKIINI 64 (219)
Q Consensus 3 ~gl~~L~~~~~~~G----i~~~tt~~d~~~~~~l~~~---vd~~kI~S~~~~-----------n~~LL~~~a~~gkPVil 64 (219)
+-+..+++++++.| +.+++-+-.++.++-+.+. .|.+-|+=+|+- |-.+++.+-+.|||||+
T Consensus 229 ~Dv~~~r~~l~~~g~~~~~~IiAKIE~~~av~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIv 308 (509)
T PLN02762 229 EVIKHLKSYIAARSRDSDIGVIAKIESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIV 308 (509)
T ss_pred HHHHHHHHHHHHcCCCCCceEEEEeCCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEE
Confidence 34678888988775 6799999888888777764 888999888764 34567777788999999
Q ss_pred eCCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Q 027740 65 KKGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN 102 (219)
Q Consensus 65 stG~~--------~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~ 102 (219)
.|-|- .|-.|+-..+..+. -|..-++|-.-++.=.||
T Consensus 309 ATQmLeSMi~np~PTRAEvsDVaNAVl-DGtDavMLSgETA~G~yP 353 (509)
T PLN02762 309 ASQLLESMIEYPTPTRAEVADVSEAVR-QRADALMLSGESAMGLYP 353 (509)
T ss_pred ECchHHhhhhCCCCCchhHHHHHHHHH-hCCCEEEEcchhcCCCCH
Confidence 77653 35567777766666 467666665554432455
No 444
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=64.15 E-value=51 Score=28.39 Aligned_cols=94 Identities=10% Similarity=-0.031 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhcCCCeEeee------C-----Cc-----------ccHHHHhhh-ccccccCCCCCC-------------
Q 027740 4 GLKILEKVKIAYDIPIVTDV------H-----ET-----------VQCEEVGKV-ADIIQIPAFLCR------------- 47 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~------~-----d~-----------~~~~~l~~~-vd~~kI~S~~~~------------- 47 (219)
.+..+++.++++||.+.+-- + |+ ..++....+ ++.+.+++....
T Consensus 53 ~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (284)
T PRK13210 53 ERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFI 132 (284)
T ss_pred HHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHH
Confidence 47889999999999987531 1 11 122233344 667766644210
Q ss_pred -C-HHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 027740 48 -Q-TDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 97 (219)
Q Consensus 48 -n-~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs 97 (219)
+ ..+.+.+.+.|..+.+.+.....+.....+...+...+.+++-+|....
T Consensus 133 ~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~l~~~v~~~~~~~~~D~~ 184 (284)
T PRK13210 133 EGLAWAVEQAAAAQVMLAVEIMDTPFMNSISKWKKWDKEIDSPWLTVYPDVG 184 (284)
T ss_pred HHHHHHHHHHHHhCCEEEEEecCccccCCHHHHHHHHHHcCCCceeEEecCC
Confidence 1 2355666677888988885332233344444556666777888876654
No 445
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=64.10 E-value=58 Score=27.50 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHH
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIP 152 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~ 152 (219)
+....++...+.|...++++.....+ .....|+..+..+++ ..+||.++ +|.+. .
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~--~g~~~~~~~i~~i~~~~~~pi~~g--------------------gGI~~--~ 84 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAK--EGGPVNLPVIKKIVRETGVPVQVG--------------------GGIRS--L 84 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccc--cCCCCcHHHHHHHHHhcCCCEEEe--------------------CCcCC--H
Confidence 34445555688899999998765543 112357888888877 78899884 13222 3
Q ss_pred HHHHHHHHcCCcEEEE
Q 027740 153 CIARTAIAVGVDGVFM 168 (219)
Q Consensus 153 ~~~~aAvalGA~GlvI 168 (219)
..+..+..+||+.+++
T Consensus 85 ed~~~~~~~Ga~~vvl 100 (230)
T TIGR00007 85 EDVEKLLDLGVDRVII 100 (230)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 4456778899997654
No 446
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=64.09 E-value=1.1e+02 Score=27.26 Aligned_cols=106 Identities=16% Similarity=0.136 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccc--------hhHHHHH
Q 027740 44 FLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDP--------RNLEWMR 115 (219)
Q Consensus 44 ~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl--------~~i~~lk 115 (219)
|.+++.++..--.-...|++|.-. --+|+ .+......-.+++|.--.-.--+...-+|. .++..|+
T Consensus 48 RHI~d~Dv~~lr~~~~~~~NlE~a---~teEm---l~ia~~~kP~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~ 121 (243)
T COG0854 48 RHIQDRDVRILRALIDTRFNLEMA---PTEEM---LAIALKTKPHQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLK 121 (243)
T ss_pred cccchhhHHHHHHHcccceecccC---chHHH---HHHHHhcCCCeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHH
Confidence 456666655555556677887644 33777 444455556678887543210000011222 2345566
Q ss_pred hcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCC
Q 027740 116 EANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVD 180 (219)
Q Consensus 116 ~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D 180 (219)
+.|++|-.-.| | . +....+|+..||+ +||-|--+=-+..|
T Consensus 122 ~~GirVSLFiD-----~-------------d-----~~qi~aa~~~gA~--~IELhTG~Ya~~~~ 161 (243)
T COG0854 122 NAGIRVSLFID-----P-------------D-----PEQIEAAAEVGAP--RIELHTGPYADAHD 161 (243)
T ss_pred hCCCeEEEEeC-----C-------------C-----HHHHHHHHHhCCC--EEEEecccccccCC
Confidence 66888765333 1 1 4556799999999 99999666555544
No 447
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=63.89 E-value=1e+02 Score=27.24 Aligned_cols=37 Identities=8% Similarity=-0.177 Sum_probs=18.8
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHc-CCCcEEEEeecCC
Q 027740 61 IINIKKGQFCASSVMVNSAEKVRLA-GNPNVMVCERGTM 98 (219)
Q Consensus 61 PVilstG~~~t~~ei~~A~e~i~~~-Gn~~i~L~~cgs~ 98 (219)
|.++..... ...+....++++.+. |.+.+.++...+.
T Consensus 118 ~~~f~~~~~-~~~~~~~~~~~~~~~~g~~~v~ii~~~~~ 155 (362)
T cd06343 118 PWTFGWQPS-YQDEARIYAKYLVEEKPNAKIAVLYQNDD 155 (362)
T ss_pred CceEecCCC-hHHHHHHHHHHHHHhCCCceEEEEEeccH
Confidence 334433333 344555556655443 5666777765443
No 448
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=63.83 E-value=43 Score=30.52 Aligned_cols=75 Identities=9% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCeEeee----CCcccHHHHhhh-ccccccCCCCC------------C----------C-----HHHH
Q 027740 5 LKILEKVKIAYDIPIVTDV----HETVQCEEVGKV-ADIIQIPAFLC------------R----------Q-----TDLL 52 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~----~d~~~~~~l~~~-vd~~kI~S~~~------------~----------n-----~~LL 52 (219)
++.+++++++.++|++.-. ...+.+..+.+. +|.+-|.+.-= . + ...|
T Consensus 167 ~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l 246 (326)
T cd02811 167 LERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASL 246 (326)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHH
Confidence 4678888888899998733 566777888888 99988765310 0 1 1344
Q ss_pred HHHHh-c-CCeEEEeCCCCCCHHHHHHHHH
Q 027740 53 VAAAK-T-GKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 53 ~~~a~-~-gkPVilstG~~~t~~ei~~A~e 80 (219)
..+.+ . +.||+.+-|.. +..++..++.
T Consensus 247 ~~~~~~~~~ipIiasGGIr-~~~dv~kal~ 275 (326)
T cd02811 247 LEVRSALPDLPLIASGGIR-NGLDIAKALA 275 (326)
T ss_pred HHHHHHcCCCcEEEECCCC-CHHHHHHHHH
Confidence 44444 4 68999999988 9988887765
No 449
>PRK06739 pyruvate kinase; Validated
Probab=63.78 E-value=71 Score=29.82 Aligned_cols=107 Identities=13% Similarity=0.104 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhc---CCCeEeeeCCcccHHHHhhh---ccccccCCCCCC-----------CHHHHHHHHhcCCeEEEeC
Q 027740 4 GLKILEKVKIAY---DIPIVTDVHETVQCEEVGKV---ADIIQIPAFLCR-----------QTDLLVAAAKTGKIINIKK 66 (219)
Q Consensus 4 gl~~L~~~~~~~---Gi~~~tt~~d~~~~~~l~~~---vd~~kI~S~~~~-----------n~~LL~~~a~~gkPVilst 66 (219)
-+..+++++++. .+.+++-+-..+.++-+.+. .|.+-|+=+|+- |-.+++.+-+.|||||+.|
T Consensus 192 Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvAT 271 (352)
T PRK06739 192 HIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITAT 271 (352)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 467788888887 47899988888888777664 888889888765 3456777777899999877
Q ss_pred CC--------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh
Q 027740 67 GQ--------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 116 (219)
Q Consensus 67 G~--------~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~ 116 (219)
-| -.|-.|+-..+..+. .|..-++|-.-++.=.|| ..++.+|++
T Consensus 272 qmLeSM~~~p~PTRAEvsDVanaV~-dG~D~vMLS~ETA~G~yP-----veaV~~m~~ 323 (352)
T PRK06739 272 QMLQSMVDHSIPTRAEVTDVFQAVL-DGTNAVMLSAESASGEHP-----IESVSTLRL 323 (352)
T ss_pred chHHhhccCCCCChHHHHHHHHHHH-hCCcEEEEcccccCCCCH-----HHHHHHHHH
Confidence 55 336677777777776 467667776554432455 355555543
No 450
>PRK06247 pyruvate kinase; Provisional
Probab=63.77 E-value=44 Score=32.48 Aligned_cols=98 Identities=16% Similarity=0.240 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhh---ccccccCCCCCC-----------CHHHHHHHHhcCCeEEEeCCC
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKV---ADIIQIPAFLCR-----------QTDLLVAAAKTGKIINIKKGQ 68 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~---vd~~kI~S~~~~-----------n~~LL~~~a~~gkPVilstG~ 68 (219)
+-+..+++++.+ .+.+++-+-+.+.++-+.+. +|.+.||-+|+. +..+++.+-+.|||+|+.|-|
T Consensus 199 ~Di~~~r~~l~~-~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQm 277 (476)
T PRK06247 199 EDVEEVRKIIGG-RVPVMAKIEKPQAIDRLEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQM 277 (476)
T ss_pred HHHHHHHHHhhh-cCeEEEEECCHHHHHhHHHHHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECch
Confidence 346677777754 57788888887777766654 899999999875 235667777789999998866
Q ss_pred C--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Q 027740 69 F--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN 102 (219)
Q Consensus 69 ~--------~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~ 102 (219)
- .|=.|+-..+..+. -|..-++|..-++.=.||
T Consensus 278 LeSM~~np~PTRAEvtDVaNAV~-dG~DavMLS~ETA~G~yP 318 (476)
T PRK06247 278 LESMIENPVPTRAEVSDVATAVL-DGADAVMLSAETASGKYP 318 (476)
T ss_pred HHHhhcCCCCCcchhHHHHHHHH-hCCcEEEEcchhcCCCCH
Confidence 3 24466666666665 467667776555432455
No 451
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=63.72 E-value=35 Score=31.60 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCCeEeeeCCc-------ccHHH--------------Hhh--h-ccccccCC---------CCC-----
Q 027740 5 LKILEKVKIAYDIPIVTDVHET-------VQCEE--------------VGK--V-ADIIQIPA---------FLC----- 46 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~-------~~~~~--------------l~~--~-vd~~kI~S---------~~~----- 46 (219)
++.+-+.|+..||+|+-|+... .+.+| +.+ + +|.||+-. +.-
T Consensus 145 vervg~ec~a~dipf~lE~ltYd~~~~~~~~~~yak~kP~~V~~a~kefs~~~~gvDVlKvEvPvn~~~veG~~~~e~~y 224 (325)
T TIGR01232 145 IERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFAKVKPRKVNEAMKLFSEPRFNVDVLKVEVPVNVKYVEGFAEGEVVY 224 (325)
T ss_pred HHHHHHHHHHCCCCeEEEEeccCCCCCCCCcHHHHHhChHHHHHHHHHhccCCCCCcEEEEecccccccccccCcccccc
Confidence 5667788999999999986654 23332 333 6 88999872 111
Q ss_pred CCHHH---HHH-HHhcCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCC-cEEEEeecC
Q 027740 47 RQTDL---LVA-AAKTGKI-INIKKGQFCASSVMVNSAEKVRLAGNP-NVMVCERGT 97 (219)
Q Consensus 47 ~n~~L---L~~-~a~~gkP-VilstG~~~t~~ei~~A~e~i~~~Gn~-~i~L~~cgs 97 (219)
+...- ++. ...+++| |+||.|.+ .+.+.+.++.-.+.|.+ +=+||=|.+
T Consensus 225 t~~eA~~~f~eq~~~~~~P~i~LSaGV~--~~~F~~~l~~A~~aGa~fsGvL~GRAt 279 (325)
T TIGR01232 225 TKEEAAQHFKDQDAATHLPYIYLSAGVS--AELFQETLKFAHEAGAKFNGVLCGRAT 279 (325)
T ss_pred cHHHHHHHHHHHhhccCCCEEEEcCCCC--HHHHHHHHHHHHHcCCCcceEEeehhh
Confidence 11122 222 2236777 67788865 88999999988888876 678888866
No 452
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=63.60 E-value=1e+02 Score=26.92 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCCeEeeeC--Ccc-c---HHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEE--eCCCCC-----
Q 027740 5 LKILEKVKIAYDIPIVTDVH--ETV-Q---CEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINI--KKGQFC----- 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~--d~~-~---~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVil--stG~~~----- 70 (219)
+.-+.+++++.|..++-... ++. + ++.+.+. +|.+-+.+.. .+.+.++.+.+.+.|+++ ......
T Consensus 82 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~-~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V 160 (331)
T PRK14987 82 LRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERT-HTPRTLKMIEVAGIPVVELMDSQSPCLDIAV 160 (331)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCC-CCHHHHHHHHhCCCCEEEEecCCCCCCCceE
Confidence 55678889999987665433 232 1 2222233 6766554433 345778888888999995 221110
Q ss_pred ---CHHHHHHHHHHHHHcCCCcEEEE
Q 027740 71 ---ASSVMVNSAEKVRLAGNPNVMVC 93 (219)
Q Consensus 71 ---t~~ei~~A~e~i~~~Gn~~i~L~ 93 (219)
..+-...|++++.+.|..+|.++
T Consensus 161 ~~Dn~~~~~~a~~~L~~~Gh~~I~~i 186 (331)
T PRK14987 161 GFDNFEAARQMTTAIIARGHRHIAYL 186 (331)
T ss_pred EeCcHHHHHHHHHHHHHCCCceEEEE
Confidence 22345678889999999999888
No 453
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=63.52 E-value=6.3 Score=35.18 Aligned_cols=134 Identities=12% Similarity=0.013 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHHHhhhccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHH
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEEVGKVADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKV 82 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i 82 (219)
+.+..+.+.++++||..--++||+.+++.+..+.+.-.+......++-| |.| .|+..|++.+..-++.+
T Consensus 126 ~~~~~~~~~~~e~Gi~pe~ev~d~~~l~~~~~l~~~G~l~~p~~~~~vl-------G~~----~g~~~~~~~l~~~l~~l 194 (272)
T PF05853_consen 126 ADARELARRMRERGIKPEIEVFDPGHLRNARRLIEKGLLPGPLLVNFVL-------GVP----GGMPATPENLLAMLDML 194 (272)
T ss_dssp HHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHTTSS-SSEEEEEEE-------S-T----TS--S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEEEcHHHHHHHHHHHHCCCCCCCeEEEEcc-------cCC----CCCCCCHHHHHHHHHhc
Confidence 4577888999999999999999999999877664433333333333222 333 78888999999888888
Q ss_pred HHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC
Q 027740 83 RLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG 162 (219)
Q Consensus 83 ~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalG 162 (219)
.. +....-|+. ......+.......-.|+.||+ =|...-.+ |....++.++|..+...|-.+|
T Consensus 195 ~~----~~~w~v~~~----g~~~~~~~~~Ai~~GghvRVGl-ED~~~~~~--------G~~a~sNaelV~~a~~ia~~~g 257 (272)
T PF05853_consen 195 PE----GAPWSVCGI----GRNQWPLLAAAIAMGGHVRVGL-EDNLYLPD--------GELAPSNAELVERAVRIARELG 257 (272)
T ss_dssp HH----TEEEEEEE-----GGGHHHHHHHHHHTT-EEEEST-TT-SEEET--------TEE-S-HHHHHHHHHHHHHHTT
T ss_pred CC----CCcEEEEcc----chhhHHHHHHHHHcCCceEEec-CccccCCC--------CCCCcCHHHHHHHHHHHHHHcC
Confidence 76 233444432 2222333332222225788888 23221011 1112355678888888888888
Q ss_pred Cc
Q 027740 163 VD 164 (219)
Q Consensus 163 A~ 164 (219)
-.
T Consensus 258 re 259 (272)
T PF05853_consen 258 RE 259 (272)
T ss_dssp -E
T ss_pred CC
Confidence 73
No 454
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=63.29 E-value=1e+02 Score=26.83 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=49.5
Q ss_pred hcCCeEEEe-------CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCC
Q 027740 57 KTGKIINIK-------KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHS 128 (219)
Q Consensus 57 ~~gkPVils-------tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs 128 (219)
+.|.|+++. .|.. +.+++..+++...+.|-.-|-. +| . .++..+..+.+ ..+||..-
T Consensus 134 ~~g~~liv~~~~~Gvh~~~~-~~~~~~~~~~~a~~~GADyikt-----~~--~---~~~~~l~~~~~~~~iPVva~---- 198 (258)
T TIGR01949 134 DWGVPLLAMMYPRGPHIDDR-DPELVAHAARLGAELGADIVKT-----PY--T---GDIDSFRDVVKGCPAPVVVA---- 198 (258)
T ss_pred HcCCCEEEEEeccCcccccc-cHHHHHHHHHHHHHHCCCEEec-----cC--C---CCHHHHHHHHHhCCCcEEEe----
Confidence 368999884 3443 6677777777666777754432 22 2 35677777766 67898651
Q ss_pred CCCCCCCccCCCCccCCCCc----ccHHHHHHHHHHcCCcEEEE
Q 027740 129 LQQPAGKKLDGGGVASGGLR----ELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~G~~----~~~~~~~~aAvalGA~GlvI 168 (219)
+|.+ +.+......+...||+|+.+
T Consensus 199 ----------------GGi~~~~~~~~~~~i~~~~~aGa~Gia~ 226 (258)
T TIGR01949 199 ----------------GGPKTNSDREFLQMIKDAMEAGAAGVAV 226 (258)
T ss_pred ----------------cCCCCCCHHHHHHHHHHHHHcCCcEEeh
Confidence 2332 11233445677899998654
No 455
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=63.16 E-value=47 Score=30.03 Aligned_cols=74 Identities=14% Similarity=0.064 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCCeEeee----------------CCcccHHHHhhh-ccccccCCCCC----------CCHHHHHHHHhc
Q 027740 6 KILEKVKIAYDIPIVTDV----------------HETVQCEEVGKV-ADIIQIPAFLC----------RQTDLLVAAAKT 58 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~----------------~d~~~~~~l~~~-vd~~kI~S~~~----------~n~~LL~~~a~~ 58 (219)
+.+.++|+.+|++|-.++ .+++++....+. +|++-++=+.+ -++++|+++.+.
T Consensus 120 ~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~ 199 (293)
T PRK07315 120 KEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEA 199 (293)
T ss_pred HHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHh
Confidence 456777787777663322 455555544444 77777762211 357777777664
Q ss_pred --CCeEEEeCCCCCCHHHHHHHH
Q 027740 59 --GKIINIKKGQFCASSVMVNSA 79 (219)
Q Consensus 59 --gkPVilstG~~~t~~ei~~A~ 79 (219)
+.|+++==|.+.+.+++..++
T Consensus 200 ~~~iPlVlhGGSGi~~e~~~~~i 222 (293)
T PRK07315 200 VPGFPIVLHGGSGIPDDQIQEAI 222 (293)
T ss_pred ccCCCEEEECCCCCCHHHHHHHH
Confidence 377777777666666666553
No 456
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=63.08 E-value=13 Score=34.28 Aligned_cols=106 Identities=19% Similarity=0.196 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhc--CCCeEeeeCCcccHHHHhhh---ccccccCCCCCC-----------CHHHHHHHHhcCCeEEEeCC
Q 027740 4 GLKILEKVKIAY--DIPIVTDVHETVQCEEVGKV---ADIIQIPAFLCR-----------QTDLLVAAAKTGKIINIKKG 67 (219)
Q Consensus 4 gl~~L~~~~~~~--Gi~~~tt~~d~~~~~~l~~~---vd~~kI~S~~~~-----------n~~LL~~~a~~gkPVilstG 67 (219)
-+..++++..+. .+.+++-+-....++-+.+. .|.+-|+-+|+- |-.++..+-+.|||||+.|.
T Consensus 203 dV~~lr~~l~~~~~~~~iiaKIE~~~~v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq 282 (348)
T PF00224_consen 203 DVKELRKILGEKGKDIKIIAKIETKEAVENLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQ 282 (348)
T ss_dssp HHHHHHHHHTCTTTTSEEEEEE-SHHHHHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESS
T ss_pred HHHHHHHHhhhcCcccceeeccccHHHHhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhH
Confidence 466777777764 57788888888777776664 677777755432 34667777778999999998
Q ss_pred C--------CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHH
Q 027740 68 Q--------FCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMR 115 (219)
Q Consensus 68 ~--------~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk 115 (219)
| ..|-.|+-..+..+.. |..-++|---++.=.|| ..++.+|+
T Consensus 283 ~Lesm~~~~~PTRaEv~Dv~nav~d-g~d~vmLs~ETa~G~~p-----~~~v~~~~ 332 (348)
T PF00224_consen 283 MLESMIKNPIPTRAEVSDVANAVLD-GADAVMLSGETAIGKYP-----VEAVKTMA 332 (348)
T ss_dssp SSGGGGTSSS--HHHHHHHHHHHHH-T-SEEEESHHHHTSSSH-----HHHHHHHH
T ss_pred hHHHHHhCCCCchHHHhhHHHHHHc-CCCEEEecCCcCCCCCH-----HHHHHHHH
Confidence 8 4467888888887765 66656665333321354 35556654
No 457
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=63.04 E-value=22 Score=33.74 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCC
Q 027740 71 ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSL 129 (219)
Q Consensus 71 t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~ 129 (219)
++++++.++. -+..+++++..++ |+. ...|++.|..+.+ .++++++|.+|+.
T Consensus 144 d~e~l~~ai~-----~~tklV~ie~~sN-p~G-~v~Dl~~I~~la~~~gi~liVD~t~a~ 196 (436)
T PRK07812 144 DLDAWRAAVR-----PNTKAFFAETISN-PQI-DVLDIPGVAEVAHEAGVPLIVDNTIAT 196 (436)
T ss_pred CHHHHHHhCC-----CCCeEEEEECCCC-CCC-eecCHHHHHHHHHHcCCEEEEECCCcc
Confidence 4555544332 2345777666554 222 3568999988876 8999999999973
No 458
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=62.95 E-value=1.2e+02 Score=27.63 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=48.8
Q ss_pred hcCCeEEEeCCCCC----CHHHHHHHHHHHHHcCCCcEEEEeecCCC----CCCCCCcc--chhHHHHHh-cCCCEEEcC
Q 027740 57 KTGKIINIKKGQFC----ASSVMVNSAEKVRLAGNPNVMVCERGTMF----GYNDLIVD--PRNLEWMRE-ANCPVVADV 125 (219)
Q Consensus 57 ~~gkPVilstG~~~----t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~----~~~~~~~n--l~~i~~lk~-~~~pV~~ds 125 (219)
.+++|++.+-|... ..+++..+++.+.. +..-+|..... |-...+.+ +..|..+++ .++||++=-
T Consensus 111 ~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~a----dal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~ 186 (333)
T TIGR02151 111 APNGPLIANIGAPQLVEGGPEEAQEAIDMIEA----DALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIVKE 186 (333)
T ss_pred CCCCcEEeecCchhhccccHHHHHHHHHHhcC----CCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 46899999887531 24557777777632 23333554211 11111121 256777777 699998710
Q ss_pred CCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 126 THSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 126 ~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
. | .| +....+.....+|+|++.+
T Consensus 187 ~------------g-----~g---~~~~~a~~L~~aGvd~I~V 209 (333)
T TIGR02151 187 V------------G-----FG---ISKEVAKLLADAGVSAIDV 209 (333)
T ss_pred c------------C-----CC---CCHHHHHHHHHcCCCEEEE
Confidence 0 0 01 1156677888999995444
No 459
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=62.88 E-value=37 Score=32.86 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=53.9
Q ss_pred HHHHHHHHhc-CCCeEee-eCCcccHHHHhhh-ccccccCCC--CCCC------------H---HHHHHHHhcCCeEEEe
Q 027740 6 KILEKVKIAY-DIPIVTD-VHETVQCEEVGKV-ADIIQIPAF--LCRQ------------T---DLLVAAAKTGKIINIK 65 (219)
Q Consensus 6 ~~L~~~~~~~-Gi~~~tt-~~d~~~~~~l~~~-vd~~kI~S~--~~~n------------~---~LL~~~a~~gkPVils 65 (219)
..+++..+.+ +++++.- +.+.+.+..|.+. +|+++||-+ .+.+ . ++.+++.+.+.|||-+
T Consensus 255 ~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viad 334 (475)
T TIGR01303 255 SAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWAD 334 (475)
T ss_pred HHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEe
Confidence 3445555544 8999997 9999999999999 999996544 2221 1 3333445668999999
Q ss_pred CCCCCCHHHHHHHHH
Q 027740 66 KGQFCASSVMVNSAE 80 (219)
Q Consensus 66 tG~~~t~~ei~~A~e 80 (219)
=|.. +..++..|+.
T Consensus 335 Ggi~-~~~di~kala 348 (475)
T TIGR01303 335 GGVR-HPRDVALALA 348 (475)
T ss_pred CCCC-CHHHHHHHHH
Confidence 9988 9999988865
No 460
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=62.80 E-value=1.3e+02 Score=27.73 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=67.4
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC----------------C----CCCCCCccchhHHHHHh-
Q 027740 58 TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM----------------F----GYNDLIVDPRNLEWMRE- 116 (219)
Q Consensus 58 ~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~----------------~----~~~~~~~nl~~i~~lk~- 116 (219)
+.+||++|-.. +.+++.+.++.+.+.|-.-+++.-...+ + +.+-....++.+..+++
T Consensus 160 ~~~Pv~vKl~P--~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~ 237 (310)
T COG0167 160 TKVPVFVKLAP--NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKR 237 (310)
T ss_pred ccCceEEEeCC--CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHh
Confidence 56999999987 7999999999999998766666553321 0 11112345566666665
Q ss_pred cC--CCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCC-ChHHHHHH
Q 027740 117 AN--CPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQW-PLRNLEEL 193 (219)
Q Consensus 117 ~~--~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl-~p~el~~l 193 (219)
++ +||+. . +|... ..-+..=+.+||+ ++..- ...-. -|.-++++
T Consensus 238 ~~~~ipIIG-v-------------------GGI~s--~~DA~E~i~aGA~--~vQv~---------Tal~~~Gp~i~~~I 284 (310)
T COG0167 238 LGGDIPIIG-V-------------------GGIET--GEDALEFILAGAS--AVQVG---------TALIYKGPGIVKEI 284 (310)
T ss_pred cCCCCcEEE-e-------------------cCcCc--HHHHHHHHHcCCc--hheee---------eeeeeeCchHHHHH
Confidence 55 88865 1 23211 1223444778887 44433 11111 25577777
Q ss_pred HHHHHHHHHHhC
Q 027740 194 LEELVAIAKVSK 205 (219)
Q Consensus 194 v~~ir~i~~~lg 205 (219)
++.+.++-+..|
T Consensus 285 ~~~l~~~l~~~g 296 (310)
T COG0167 285 IKGLARWLEEKG 296 (310)
T ss_pred HHHHHHHHHHcC
Confidence 777776644433
No 461
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=62.77 E-value=1.1e+02 Score=26.96 Aligned_cols=137 Identities=23% Similarity=0.241 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCeE---------eeeCCcccHHHHhhh----ccccccCCCCCCCHH-----HHHHHHhcCCeEEE
Q 027740 3 EGLKILEKVKIAYDIPIV---------TDVHETVQCEEVGKV----ADIIQIPAFLCRQTD-----LLVAAAKTGKIINI 64 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~---------tt~~d~~~~~~l~~~----vd~~kI~S~~~~n~~-----LL~~~a~~gkPVil 64 (219)
+|++-++.......+|++ ++||=...++.+.++ ++++-+-+-.=.-.+ |+++ ..---.++
T Consensus 53 ~gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~--~k~~~~l~ 130 (229)
T COG3010 53 EGVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR--IKYPGQLA 130 (229)
T ss_pred cchhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH--hhcCCcEE
Q ss_pred eCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC-CCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCcc
Q 027740 65 KKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTM-FGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVA 143 (219)
Q Consensus 65 stG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~-~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~ 143 (219)
-..-+ |++|.+.| .+.|-.-|-=...|.+ |+....+-|+.-+..+.+.+++|+.-.-...
T Consensus 131 MAD~S-t~ee~l~a----~~~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~~~~vIAEGr~~t-------------- 191 (229)
T COG3010 131 MADCS-TFEEGLNA----HKLGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSDAGCRVIAEGRYNT-------------- 191 (229)
T ss_pred EeccC-CHHHHHHH----HHcCCcEEecccccccCCCCCCCCCcHHHHHHHHhCCCeEEeeCCCCC--------------
Q ss_pred CCCCcccHHHHHHHHHHcCCcEEEE
Q 027740 144 SGGLRELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 144 ~~G~~~~~~~~~~aAvalGA~GlvI 168 (219)
+..+.-|..+||+++++
T Consensus 192 --------P~~Ak~a~~~Ga~aVvV 208 (229)
T COG3010 192 --------PEQAKKAIEIGADAVVV 208 (229)
T ss_pred --------HHHHHHHHHhCCeEEEE
No 462
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=62.56 E-value=1.4e+02 Score=28.04 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=22.5
Q ss_pred HHHHHHHHhc-C-CeEEEeCCCCCCHHHHHHHHH
Q 027740 49 TDLLVAAAKT-G-KIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 49 ~~LL~~~a~~-g-kPVilstG~~~t~~ei~~A~e 80 (219)
.++++.+-+. + +||++|-+...+.+++..+++
T Consensus 202 ~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~ 235 (392)
T cd02808 202 AQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVA 235 (392)
T ss_pred HHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHH
Confidence 4456666654 3 899999998767777666654
No 463
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=62.53 E-value=91 Score=26.21 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHhcCCCeEeeeCCcccHHH----Hhhh----cc--ccccCCCCCCCHHHHHHHHhc-----C--CeEEEe
Q 027740 3 EGLKILEKVKIAYDIPIVTDVHETVQCEE----VGKV----AD--IIQIPAFLCRQTDLLVAAAKT-----G--KIINIK 65 (219)
Q Consensus 3 ~gl~~L~~~~~~~Gi~~~tt~~d~~~~~~----l~~~----vd--~~kI~S~~~~n~~LL~~~a~~-----g--kPVils 65 (219)
.+...|+.|++..|++|.......+..+. +.++ .| ++-.+.+.-++..+++++.+. . .=++++
T Consensus 43 ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVls 122 (196)
T PF00448_consen 43 GAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLS 122 (196)
T ss_dssp HHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred cHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEe
Confidence 46788999999999998874433322222 2211 23 344566666666665555442 1 223444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEE
Q 027740 66 KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVA 123 (219)
Q Consensus 66 tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ 123 (219)
..+. .+++..+.+.....+-..+++...= +...+.++-.+.. +++||-|
T Consensus 123 a~~~--~~~~~~~~~~~~~~~~~~lIlTKlD-------et~~~G~~l~~~~~~~~Pi~~ 172 (196)
T PF00448_consen 123 ATMG--QEDLEQALAFYEAFGIDGLILTKLD-------ETARLGALLSLAYESGLPISY 172 (196)
T ss_dssp GGGG--GHHHHHHHHHHHHSSTCEEEEESTT-------SSSTTHHHHHHHHHHTSEEEE
T ss_pred cccC--hHHHHHHHHHhhcccCceEEEEeec-------CCCCcccceeHHHHhCCCeEE
Confidence 4433 5666655555554556667665532 2334555544444 8899887
No 464
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=62.50 E-value=83 Score=27.24 Aligned_cols=76 Identities=25% Similarity=0.287 Sum_probs=49.6
Q ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cC--CCEEEcCCCCCCCCCCCcc
Q 027740 61 IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-AN--CPVVADVTHSLQQPAGKKL 137 (219)
Q Consensus 61 PVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~--~pV~~ds~Hs~~~~~~~~~ 137 (219)
-|||.++.- +-+|+..+++.+...|-. +.--++.|.+.. ..+..+..|++ .+ ++|-.
T Consensus 125 KvIlEt~~L-~~e~i~~a~~~~~~agad---fIKTsTG~~~~g--at~~~v~~m~~~~~~~~~IKa-------------- 184 (221)
T PRK00507 125 KVIIETCLL-TDEEKVKACEIAKEAGAD---FVKTSTGFSTGG--ATVEDVKLMRETVGPRVGVKA-------------- 184 (221)
T ss_pred EEEeecCcC-CHHHHHHHHHHHHHhCCC---EEEcCCCCCCCC--CCHHHHHHHHHHhCCCceEEe--------------
Confidence 466777877 999999999999988876 444444443222 46777777876 44 44433
Q ss_pred CCCCccCCCCcccHHHHHHHHHHcCCc
Q 027740 138 DGGGVASGGLRELIPCIARTAIAVGVD 164 (219)
Q Consensus 138 ~~~~~~~~G~~~~~~~~~~aAvalGA~ 164 (219)
+||.+. ..-+..-+.+||+
T Consensus 185 ------sGGIrt--~~~a~~~i~aGA~ 203 (221)
T PRK00507 185 ------SGGIRT--LEDALAMIEAGAT 203 (221)
T ss_pred ------eCCcCC--HHHHHHHHHcCcc
Confidence 246554 3345566788987
No 465
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=62.42 E-value=77 Score=28.56 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=29.7
Q ss_pred HHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEE
Q 027740 52 LVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVC 93 (219)
Q Consensus 52 L~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~ 93 (219)
..+++.-..|||.-+|.. +.+|..+-++...+.|-.-+++.
T Consensus 66 ~v~~~~grvpviaG~g~~-~t~eai~lak~a~~~Gad~il~v 106 (299)
T COG0329 66 VVEAVGGRVPVIAGVGSN-STAEAIELAKHAEKLGADGILVV 106 (299)
T ss_pred HHHHHCCCCcEEEecCCC-cHHHHHHHHHHHHhcCCCEEEEe
Confidence 334444457999999999 88888888887777776655444
No 466
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=62.38 E-value=14 Score=33.76 Aligned_cols=113 Identities=16% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCCCeEe-ee-----CCcc-----cHHHHhhh-cc--------------ccccCCCC--CCC--HHHHHH
Q 027740 5 LKILEKVKIAYDIPIVT-DV-----HETV-----QCEEVGKV-AD--------------IIQIPAFL--CRQ--TDLLVA 54 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t-t~-----~d~~-----~~~~l~~~-vd--------------~~kI~S~~--~~n--~~LL~~ 54 (219)
...|++..++.||.+++ |= |.|. +++.++++ ++ ++|.+... ++. .-++++
T Consensus 67 ~~~l~~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~ikaG~Ik~~~~~~~it~~E~k~lrA 146 (308)
T PF02126_consen 67 VEALREISRRTGVNIIASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGIKAGIIKEIGSSNPITPLEEKVLRA 146 (308)
T ss_dssp HHHHHHHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB-ESEEEEEEBTTBCEHHHHHHHHH
T ss_pred HHHHHHHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCccchhheeEeeccCCCCHHHHHHHHH
Confidence 46789999999999887 33 3232 23444432 22 66765544 442 456777
Q ss_pred HHh----cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCC--cEEEEeecCCCCCCCCCccchhHHHHHhcCCCEEEcCC
Q 027740 55 AAK----TGKIINIKKGQFCASSVMVNSAEKVRLAGNP--NVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADVT 126 (219)
Q Consensus 55 ~a~----~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~--~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~ 126 (219)
+|+ ||.||.+-++.+ + ..-.+.++.+.+.|.+ +++++|...+ .|+..+..+-+.++-|.||.=
T Consensus 147 aa~A~~~TG~pI~~H~~~g-~-~~~~e~~~il~e~Gv~~~rvvigH~D~~-------~D~~y~~~la~~G~~l~~D~~ 215 (308)
T PF02126_consen 147 AARAHKETGAPISTHTGRG-T-RMGLEQLDILEEEGVDPSRVVIGHMDRN-------PDLDYHRELADRGVYLEFDTI 215 (308)
T ss_dssp HHHHHHHHT-EEEEEESTT-G-TCHHHHHHHHHHTT--GGGEEETSGGGS-------T-HHHHHHHHHTT-EEEETTT
T ss_pred HHHHHHHhCCeEEEcCCCC-C-cCHHHHHHHHHHcCCChhHeEEeCCCCC-------CCHHHHHHHHhcCCEEEecCC
Confidence 665 799999999988 4 1223346678888854 8999998642 366666666567888998743
No 467
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=62.37 E-value=1.2e+02 Score=27.39 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=25.0
Q ss_pred ccccccCCCCCCCHHHH----HHHHhcCCeEEEeCCCC
Q 027740 36 ADIIQIPAFLCRQTDLL----VAAAKTGKIINIKKGQF 69 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL----~~~a~~gkPVilstG~~ 69 (219)
-.-|-||++++.|++.+ +++-+.+.||||.....
T Consensus 15 ~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~ 52 (288)
T TIGR00167 15 EEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNG 52 (288)
T ss_pred HCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcc
Confidence 45678889999997655 44555788999887665
No 468
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=62.18 E-value=31 Score=30.16 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC-----CCCcc--chhHHHHHh-cCCCEEEcCCCC
Q 027740 68 QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN-----DLIVD--PRNLEWMRE-ANCPVVADVTHS 128 (219)
Q Consensus 68 ~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~-----~~~~n--l~~i~~lk~-~~~pV~~ds~Hs 128 (219)
...+.+++..-++...+.|-. ++=+-.+++.|.. ..+.+ ...+..+++ +++||.+|+.+.
T Consensus 19 ~~~~~~~~~~~a~~~~~~GAd-iIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~ 86 (258)
T cd00423 19 KFLSLDKALEHARRMVEEGAD-IIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNA 86 (258)
T ss_pred ccCCHHHHHHHHHHHHHCCCC-EEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcH
Confidence 334677777777777778864 4444444442221 11111 133444555 588888887764
No 469
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=62.15 E-value=44 Score=32.28 Aligned_cols=99 Identities=12% Similarity=0.156 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHhcC---CCeEeeeCCcccHHHHhhh---ccccccCCCCCCC-----------HHHHHHHHhcCCeEEEe
Q 027740 3 EGLKILEKVKIAYD---IPIVTDVHETVQCEEVGKV---ADIIQIPAFLCRQ-----------TDLLVAAAKTGKIINIK 65 (219)
Q Consensus 3 ~gl~~L~~~~~~~G---i~~~tt~~d~~~~~~l~~~---vd~~kI~S~~~~n-----------~~LL~~~a~~gkPVils 65 (219)
+-+..++++..+.+ +.+++-+-+++.++-+.+. .|.+.+|..|+.. ..++.++.+.|+|+++.
T Consensus 197 ~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~a 276 (473)
T TIGR01064 197 EDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITA 276 (473)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhhCCcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 34677888887654 7888888888888777765 5888888876653 35667777889999998
Q ss_pred CCCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Q 027740 66 KGQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN 102 (219)
Q Consensus 66 tG~~--------~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~ 102 (219)
|-|- .|=.|+..+...+. .|..-++|.--++.=.||
T Consensus 277 tqmLeSM~~~p~PTRAe~~dv~~~v~-~G~d~v~ls~eta~G~yP 320 (473)
T TIGR01064 277 TQMLDSMIKNPRPTRAEVSDVANAIL-DGTDAVMLSGETAKGKYP 320 (473)
T ss_pred ChhhhhhhcCCCCCcccHHHHHHHHH-cCCCEEEEcchhhcCCCH
Confidence 8432 23346666666554 577656664443321455
No 470
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=62.13 E-value=51 Score=27.41 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHhcCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHhcCCCE
Q 027740 45 LCRQTDLLVAAAKTGK-IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPV 121 (219)
Q Consensus 45 ~~~n~~LL~~~a~~gk-PVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~~~~pV 121 (219)
++.|.+-++++.+.|- -|.|.|. +++++.++++.++..+. ++.+.-+|. +|+.++..+.++++-+
T Consensus 86 Ev~~~ee~~ea~~~g~d~I~lD~~---~~~~~~~~v~~l~~~~~-~v~ie~SGG--------I~~~ni~~ya~~gvD~ 151 (169)
T PF01729_consen 86 EVENLEEAEEALEAGADIIMLDNM---SPEDLKEAVEELRELNP-RVKIEASGG--------ITLENIAEYAKTGVDV 151 (169)
T ss_dssp EESSHHHHHHHHHTT-SEEEEES----CHHHHHHHHHHHHHHTT-TSEEEEESS--------SSTTTHHHHHHTT-SE
T ss_pred EcCCHHHHHHHHHhCCCEEEecCc---CHHHHHHHHHHHhhcCC-cEEEEEECC--------CCHHHHHHHHhcCCCE
Confidence 3445544555555563 4445543 79999999999977654 455554443 6788888888877644
No 471
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=61.80 E-value=83 Score=27.33 Aligned_cols=89 Identities=8% Similarity=0.020 Sum_probs=54.2
Q ss_pred HHHHHHHHHhcCCCeEeeeCC--cc-c---HHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCC-------C
Q 027740 5 LKILEKVKIAYDIPIVTDVHE--TV-Q---CEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQF-------C 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d--~~-~---~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~-------~ 70 (219)
+..+.+.+++.|..++....+ .+ + ++.+.+. +|.+-+-+.. .+.++++.+.+.+.||++=.... .
T Consensus 78 ~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~-~~~~~~~~l~~~~iPvV~~~~~~~~~~~~~V 156 (329)
T TIGR01481 78 ARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGT-ITEKLREEFSRSPVPVVLAGTVDKENELPSV 156 (329)
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-CChHHHHHHHhcCCCEEEEecCCCCCCCCEE
Confidence 455677888888877654332 21 1 1222333 6765554433 24566777888899988632110 0
Q ss_pred ---CHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 71 ---ASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 71 ---t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
..+-...+++++.+.|..+|.++-
T Consensus 157 ~~D~~~~~~~a~~~L~~~G~~~I~~i~ 183 (329)
T TIGR01481 157 NIDYKQATKEAVGELIAKGHKSIAFVG 183 (329)
T ss_pred EECcHHHHHHHHHHHHHCCCCeEEEEe
Confidence 124456688899999999998873
No 472
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=61.46 E-value=23 Score=30.63 Aligned_cols=59 Identities=7% Similarity=0.146 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcCCCeEee--eCCcccHHHHhhh-ccccccCCCCCCCHHHHHHHHhc-CCeEEEe
Q 027740 5 LKILEKVKIAYDIPIVTD--VHETVQCEEVGKV-ADIIQIPAFLCRQTDLLVAAAKT-GKIINIK 65 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt--~~d~~~~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~-gkPVils 65 (219)
+..+++.+++.++++... +.+.++++.+.+. ++-.-||+... |.++++++++. |. |++|
T Consensus 62 ~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~-~~~~l~~~~~~~g~-ivvs 124 (228)
T PRK04128 62 LDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF-DLEFLEKVTSEFEG-ITVS 124 (228)
T ss_pred HHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc-CHHHHHHHHHHcCC-EEEE
Confidence 678889999999998885 9999999998888 88888999988 99999999864 44 5553
No 473
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=61.40 E-value=55 Score=30.89 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=58.2
Q ss_pred HHHHHHHHHhc-CCCeEeeeCCcccHHH---H----hhh-cccccc--CC------C-----CCCCHHHHHHH----Hh-
Q 027740 5 LKILEKVKIAY-DIPIVTDVHETVQCEE---V----GKV-ADIIQI--PA------F-----LCRQTDLLVAA----AK- 57 (219)
Q Consensus 5 l~~L~~~~~~~-Gi~~~tt~~d~~~~~~---l----~~~-vd~~kI--~S------~-----~~~n~~LL~~~----a~- 57 (219)
|+.+.+..+++ +++++.+++...+.+. + ++. +|++-+ ++ + ..++.++++++ -+
T Consensus 101 l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~ 180 (385)
T PLN02495 101 LAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK 180 (385)
T ss_pred HHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh
Confidence 45556666677 6899999966433332 2 233 455442 11 1 12466666443 33
Q ss_pred cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecC
Q 027740 58 TGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGT 97 (219)
Q Consensus 58 ~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs 97 (219)
+.+||++|-+.. +.++...++.+.+.|..-|++..+..
T Consensus 181 ~~iPv~vKLsPn--~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 181 ATVPVWAKMTPN--ITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred hcCceEEEeCCC--hhhHHHHHHHHHHhCCCEEEEecccC
Confidence 479999999965 66788888888888888788877654
No 474
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=61.27 E-value=94 Score=25.77 Aligned_cols=90 Identities=9% Similarity=0.012 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCcc-cHHH---Hhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEe-CCCC------C
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETV-QCEE---VGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIK-KGQF------C 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~-~~~~---l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVils-tG~~------~ 70 (219)
++-+.+.++++|..++- +-.+++ +.+. +.+. +|.+-+-+.. .+.+.++.+.+.+.|+++= +... .
T Consensus 18 ~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~-~~~~~~~~l~~~~iPvv~~~~~~~~~~~~~v 96 (268)
T cd06273 18 IQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLD-HSPALLDLLARRGVPYVATWNYSPDSPYPCV 96 (268)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCC-CCHHHHHHHHhCCCCEEEEcCCCCCCCCCEE
Confidence 35577888999977665 223332 2222 3333 6655443332 3567778888889999873 2111 0
Q ss_pred ---CHHHHHHHHHHHHHcCCCcEEEEee
Q 027740 71 ---ASSVMVNSAEKVRLAGNPNVMVCER 95 (219)
Q Consensus 71 ---t~~ei~~A~e~i~~~Gn~~i~L~~c 95 (219)
..+....+++++.+.|.+++.++..
T Consensus 97 ~~d~~~~~~~~~~~l~~~g~~~i~~i~~ 124 (268)
T cd06273 97 GFDNREAGRLAARHLIALGHRRIAMIFG 124 (268)
T ss_pred EeChHHHHHHHHHHHHHCCCCeEEEEec
Confidence 1355677888999999999999864
No 475
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=61.11 E-value=1.6e+02 Score=28.31 Aligned_cols=167 Identities=16% Similarity=0.095 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhcCCCeEeeeCCcc---cHHHHhhh--------ccccccCCCCCCCH--------------HHHHHHHhc
Q 027740 4 GLKILEKVKIAYDIPIVTDVHETV---QCEEVGKV--------ADIIQIPAFLCRQT--------------DLLVAAAKT 58 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~tt~~d~~---~~~~l~~~--------vd~~kI~S~~~~n~--------------~LL~~~a~~ 58 (219)
|+.-+++.+...|=|.+.+++-|. +.+.++++ +|++|=-- .+.|+ .+-++-.+|
T Consensus 147 Gi~g~R~~lgv~~RPL~gtiiKPklGLsp~~~a~~~y~~~~GGvD~IKDDE-~l~~q~f~p~~eRv~~~~~ai~~a~~eT 225 (424)
T cd08208 147 GIAGLRERLQAHDRPIFFGVIKPNIGLPPGEFAELGYQSWLGGLDIAKDDE-MLADVDWCPLEERAALLGKARRRAEAET 225 (424)
T ss_pred ChhhHHHHhCCCCCCeeeeeecccccCCHHHHHHHHHHHHcCCcccccccc-cccCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 566677777778888988888883 44444443 44544322 22232 223344568
Q ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCC-CCCCCCCCCc
Q 027740 59 GKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVT-HSLQQPAGKK 136 (219)
Q Consensus 59 gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~-Hs~~~~~~~~ 136 (219)
|+..+..-...++.+|+.+=++.+++.|.+ +++.....+ -+.++..|++ +++|+-.=.. |..-.++
T Consensus 226 G~~~~ya~NiT~~~~em~~ra~~a~~~G~~--~vmv~~~~~-------G~~al~~L~~~~~l~ihaHra~~ga~~r~--- 293 (424)
T cd08208 226 GVPKIYLANITDEVDRLMELHDVAVRNGAN--ALLINAMPV-------GLSAVRMLRKHAQVPLIAHFPFIASFSRL--- 293 (424)
T ss_pred CCcceEEEEccCCHHHHHHHHHHHHHhCCC--EEEEeeecc-------cHHHHHHHHhcCCCeEEeccCccccccCC---
Confidence 988777766666899999999999999985 344443332 3566777887 7787754111 1110000
Q ss_pred cCCCCccCCCCcccHHHHHHHHHHcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 027740 137 LDGGGVASGGLRELIPCIARTAIAVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEELVA 199 (219)
Q Consensus 137 ~~~~~~~~~G~~~~~~~~~~aAvalGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ir~ 199 (219)
+. -|... ...+...--.|||.+.+.. .-+++....+++.+....++.
T Consensus 294 -----~~-~Gis~--~vl~Kl~RLaGaD~ih~~~--------~gg~~~~~~~~~~~~~~~~~~ 340 (424)
T cd08208 294 -----EK-YGIHS--RVMTKLQRLAGLDVVIMPG--------FGPRMMTPEEEVLECVIACLE 340 (424)
T ss_pred -----CC-CCCcH--HHHHHHHHHcCCCeeeccC--------CCCCccchHHHHHHHHHHHhC
Confidence 00 13322 2356677788999654311 123455555666655554443
No 476
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=61.10 E-value=1.2e+02 Score=26.72 Aligned_cols=84 Identities=23% Similarity=0.267 Sum_probs=50.1
Q ss_pred HHhcCCeEEEeC-------CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCC
Q 027740 55 AAKTGKIINIKK-------GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVT 126 (219)
Q Consensus 55 ~a~~gkPVilst-------G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~ 126 (219)
+.+.|+|+++-. +...+.+++..+++...+.|-.-| -++| + -+...+..+.+ ..+||...
T Consensus 135 ~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~v-----Kt~~--~---~~~~~l~~~~~~~~ipV~a~-- 202 (267)
T PRK07226 135 CEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIV-----KTNY--T---GDPESFREVVEGCPVPVVIA-- 202 (267)
T ss_pred HHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEE-----eeCC--C---CCHHHHHHHHHhCCCCEEEE--
Confidence 344699988841 222377888888888777776533 1123 2 14556666555 57898662
Q ss_pred CCCCCCCCCccCCCCccCCCCc----ccHHHHHHHHHHcCCcEEEE
Q 027740 127 HSLQQPAGKKLDGGGVASGGLR----ELIPCIARTAIAVGVDGVFM 168 (219)
Q Consensus 127 Hs~~~~~~~~~~~~~~~~~G~~----~~~~~~~~aAvalGA~GlvI 168 (219)
||.+ +.+......++.+||+|+.+
T Consensus 203 ------------------GGi~~~~~~~~l~~v~~~~~aGA~Gis~ 230 (267)
T PRK07226 203 ------------------GGPKTDTDREFLEMVRDAMEAGAAGVAV 230 (267)
T ss_pred ------------------eCCCCCCHHHHHHHHHHHHHcCCcEEeh
Confidence 2333 12333455678899998644
No 477
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=60.96 E-value=1.1e+02 Score=26.39 Aligned_cols=139 Identities=14% Similarity=0.120 Sum_probs=76.3
Q ss_pred HHHHHHHHHHh-cCCCeEeeeCCccc---HHHHhhh-ccccccCCCCCCCH-HHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 027740 4 GLKILEKVKIA-YDIPIVTDVHETVQ---CEEVGKV-ADIIQIPAFLCRQT-DLLVAAAKTGKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 4 gl~~L~~~~~~-~Gi~~~tt~~d~~~---~~~l~~~-vd~~kI~S~~~~n~-~LL~~~a~~gkPVilstG~~~t~~ei~~ 77 (219)
|.+.+++..+. ..+++=.=.+=..- ++.+.+. +|++-+-.....+. ..|+.+-+.|+-..+.-...-.++.+..
T Consensus 45 g~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~ 124 (220)
T PRK08883 45 GAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEY 124 (220)
T ss_pred CHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHH
Confidence 45566666554 35664332222222 2333444 67777776655553 6778888888766666666623455444
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCC---CCccchhHHHHHh-c-----CCCEEEcCCCCCCCCCCCccCCCCccCCCCc
Q 027740 78 SAEKVRLAGNPNVMVCERGTMFGYND---LIVDPRNLEWMRE-A-----NCPVVADVTHSLQQPAGKKLDGGGVASGGLR 148 (219)
Q Consensus 78 A~e~i~~~Gn~~i~L~~cgs~~~~~~---~~~nl~~i~~lk~-~-----~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~ 148 (219)
-++.+ +.+|+-.+ ..++.- ....+..|..+|+ . ++||.+| ||..
T Consensus 125 ~l~~~------D~vlvMtV-~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vd--------------------GGI~ 177 (220)
T PRK08883 125 IMDKV------DLILLMSV-NPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEID--------------------GGVK 177 (220)
T ss_pred HHHhC------CeEEEEEe-cCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEE--------------------CCCC
Confidence 33322 44444332 222221 1223445555554 2 4788776 2432
Q ss_pred ccHHHHHHHHHHcCCcEEEEeeec
Q 027740 149 ELIPCIARTAIAVGVDGVFMEVHD 172 (219)
Q Consensus 149 ~~~~~~~~aAvalGA~GlvIEkH~ 172 (219)
..-....+..|||++++=+-+
T Consensus 178 ---~eni~~l~~aGAd~vVvGSaI 198 (220)
T PRK08883 178 ---VDNIREIAEAGADMFVAGSAI 198 (220)
T ss_pred ---HHHHHHHHHcCCCEEEEeHHH
Confidence 344557789999999987664
No 478
>PTZ00300 pyruvate kinase; Provisional
Probab=60.88 E-value=61 Score=31.32 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcC--CCeEeeeCCcccHHHHhhh---ccccccCCCCCC-----------CHHHHHHHHhcCCeEEEeCC
Q 027740 4 GLKILEKVKIAYD--IPIVTDVHETVQCEEVGKV---ADIIQIPAFLCR-----------QTDLLVAAAKTGKIINIKKG 67 (219)
Q Consensus 4 gl~~L~~~~~~~G--i~~~tt~~d~~~~~~l~~~---vd~~kI~S~~~~-----------n~~LL~~~a~~gkPVilstG 67 (219)
-+..+++++.+.| +.+++-+-+++.++-+.+. +|.+.||-+|+. +..+++.+-+.|||||+.|-
T Consensus 174 Dv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQ 253 (454)
T PTZ00300 174 QVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQ 253 (454)
T ss_pred HHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECc
Confidence 3566777776543 6788888888877776664 899999998765 34566777788999999876
Q ss_pred CC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCC
Q 027740 68 QF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYN 102 (219)
Q Consensus 68 ~~--------~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~ 102 (219)
|- .|-.|+-..+..+. .|..-++|-.-++.=.||
T Consensus 254 mLeSM~~~p~PTRAEvsDVanAv~-dG~DavMLS~ETA~G~yP 295 (454)
T PTZ00300 254 MLESMTYNPRPTRAEVSDVANAVF-NGADCVMLSGETAKGKYP 295 (454)
T ss_pred hHHHHhhCCCCCchhHHHHHHHHH-hCCcEEEEechhcCCCCH
Confidence 53 35567777666665 367667775555432455
No 479
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=60.55 E-value=1e+02 Score=25.88 Aligned_cols=86 Identities=23% Similarity=0.310 Sum_probs=0.0
Q ss_pred HHHHHhcCCeE--EEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCC
Q 027740 52 LVAAAKTGKII--NIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHS 128 (219)
Q Consensus 52 L~~~a~~gkPV--ilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs 128 (219)
+...+. |+|+ |+.+|.- +.+++..+++...+.|-. ++-..|-|+... ..+..+..|++ ...++++
T Consensus 110 v~~~~~-g~~lkvI~e~~~l-~~~~i~~a~ria~e~GaD---~IKTsTG~~~~~--at~~~v~~~~~~~~~~v~i----- 177 (203)
T cd00959 110 VVEACG-GAPLKVILETGLL-TDEEIIKACEIAIEAGAD---FIKTSTGFGPGG--ATVEDVKLMKEAVGGRVGV----- 177 (203)
T ss_pred HHHhcC-CCeEEEEEecCCC-CHHHHHHHHHHHHHhCCC---EEEcCCCCCCCC--CCHHHHHHHHHHhCCCceE-----
Q ss_pred CCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCc
Q 027740 129 LQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVD 164 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~ 164 (219)
+.+||.+. ..-++.-+.+||+
T Consensus 178 -------------k~aGGikt--~~~~l~~~~~g~~ 198 (203)
T cd00959 178 -------------KAAGGIRT--LEDALAMIEAGAT 198 (203)
T ss_pred -------------EEeCCCCC--HHHHHHHHHhChh
No 480
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=60.49 E-value=56 Score=28.42 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHH
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIP 152 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~ 152 (219)
+..+.++.....|...+++......- .....|+..+..+++ .++||.++ +|.+. .
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~--~~~~~n~~~i~~i~~~~~~pv~~~--------------------GGi~s--~ 86 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASS--EGRTTMIDVVERTAETVFIPLTVG--------------------GGIKS--I 86 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCccc--ccChhhHHHHHHHHHhcCCCEEEE--------------------CCCCC--H
Confidence 33445555667898888888875431 123468888888877 78999884 23332 2
Q ss_pred HHHHHHHHcCCcEEEEeee
Q 027740 153 CIARTAIAVGVDGVFMEVH 171 (219)
Q Consensus 153 ~~~~aAvalGA~GlvIEkH 171 (219)
.-+.-...+||+++++=+.
T Consensus 87 ~d~~~~~~~Ga~~vivgt~ 105 (254)
T TIGR00735 87 EDVDKLLRAGADKVSINTA 105 (254)
T ss_pred HHHHHHHHcCCCEEEEChh
Confidence 3345566789998877543
No 481
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=60.44 E-value=72 Score=26.89 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHH
Q 027740 74 VMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIP 152 (219)
Q Consensus 74 ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~ 152 (219)
+....++.+.+.|.+.+++..-..... ....|+..+..+++ .++||.++ . |.+. .
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~--g~~~~~~~i~~i~~~~~~pv~~~-G-------------------GI~~--~ 86 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKA--GKPVNLELIEAIVKAVDIPVQVG-G-------------------GIRS--L 86 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc--CCcccHHHHHHHHHHCCCCEEEc-C-------------------CcCC--H
Confidence 334455556678888888877532221 12257888888877 78999883 2 3332 2
Q ss_pred HHHHHHHHcCCcEEEEe
Q 027740 153 CIARTAIAVGVDGVFME 169 (219)
Q Consensus 153 ~~~~aAvalGA~GlvIE 169 (219)
.-+..+..+||+++++=
T Consensus 87 ed~~~~~~~Ga~~vilg 103 (233)
T PRK00748 87 ETVEALLDAGVSRVIIG 103 (233)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 33456777899976653
No 482
>PLN02535 glycolate oxidase
Probab=60.42 E-value=41 Score=31.53 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCCeEe-eeCCcccHHHHhhh-ccccccCCCCCCC-------HHHHHHHHh---cCCeEEEeCCCCCCHHH
Q 027740 7 ILEKVKIAYDIPIVT-DVHETVQCEEVGKV-ADIIQIPAFLCRQ-------TDLLVAAAK---TGKIINIKKGQFCASSV 74 (219)
Q Consensus 7 ~L~~~~~~~Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~~~n-------~~LL~~~a~---~gkPVilstG~~~t~~e 74 (219)
.++.+++..++|++. .+.+++++..+.+. +|.+-+...--++ ...|.++.+ ...|||.+-|.. +-.+
T Consensus 214 ~i~~lr~~~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~dGGIr-~g~D 292 (364)
T PLN02535 214 DIEWLRSITNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLDGGVR-RGTD 292 (364)
T ss_pred HHHHHHhccCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEeeCCCC-CHHH
Confidence 445556678899877 78999999999998 9988775322222 455656543 258999999988 8888
Q ss_pred HHHHHH
Q 027740 75 MVNSAE 80 (219)
Q Consensus 75 i~~A~e 80 (219)
+..|+.
T Consensus 293 v~KALa 298 (364)
T PLN02535 293 VFKALA 298 (364)
T ss_pred HHHHHH
Confidence 887753
No 483
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=60.27 E-value=1.2e+02 Score=26.75 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHc-CCCcEEEEee
Q 027740 71 ASSVMVNSAEKVRLA-GNPNVMVCER 95 (219)
Q Consensus 71 t~~ei~~A~e~i~~~-Gn~~i~L~~c 95 (219)
+.+.+..-++++.+. |.+-++++=.
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~Gs 44 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVNGS 44 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECcC
Confidence 566666666666666 6655544433
No 484
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=60.13 E-value=25 Score=30.24 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCCeEeeeCCcccHHHHhhh-ccccccCCCCCCC-HHHHHHHHhc--CCeEEEeCCCCCCHHHHHHHHHH
Q 027740 6 KILEKVKIAYDIPIVTDVHETVQCEEVGKV-ADIIQIPAFLCRQ-TDLLVAAAKT--GKIINIKKGQFCASSVMVNSAEK 81 (219)
Q Consensus 6 ~~L~~~~~~~Gi~~~tt~~d~~~~~~l~~~-vd~~kI~S~~~~n-~~LL~~~a~~--gkPVilstG~~~t~~ei~~A~e~ 81 (219)
+.+.++|+++|++++-=++.+..+....++ .+++|+=..+... ..+++.+..- +.|++ -||-- +++ ++.++
T Consensus 87 ~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~~plp~~~l~-ptGGV-~~~---n~~~~ 161 (201)
T PRK06015 87 QELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALSSPLAGTFFC-PTGGI-SLK---NARDY 161 (201)
T ss_pred HHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHHhhCCCCcEE-ecCCC-CHH---HHHHH
Confidence 567889999999999999999999999998 9999997776664 8888888762 56666 55544 454 55566
Q ss_pred HHH
Q 027740 82 VRL 84 (219)
Q Consensus 82 i~~ 84 (219)
+..
T Consensus 162 l~a 164 (201)
T PRK06015 162 LSL 164 (201)
T ss_pred HhC
Confidence 654
No 485
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.08 E-value=1e+02 Score=25.66 Aligned_cols=88 Identities=13% Similarity=0.011 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCCeEeeeCCc---ccHHHH---hhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeC----C------
Q 027740 5 LKILEKVKIAYDIPIVTDVHET---VQCEEV---GKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKK----G------ 67 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d~---~~~~~l---~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilst----G------ 67 (219)
+.-+.++++++|..++....+. .+.+.+ .+. +|.+-+.+.+.. .+.++.+.+.+.||++=- +
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~i~~~~~~~~~~~~ 96 (270)
T cd06296 18 LRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELT-SAQRAALRRTGIPFVVVDPAGDPDADVPS 96 (270)
T ss_pred HHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHHhcCCCCEEEEecccCCCCCCCE
Confidence 4556788889998876644332 122333 333 777666555443 356788878899987621 1
Q ss_pred --CCCCHHHHHHHHHHHHHcCCCcEEEEe
Q 027740 68 --QFCASSVMVNSAEKVRLAGNPNVMVCE 94 (219)
Q Consensus 68 --~~~t~~ei~~A~e~i~~~Gn~~i~L~~ 94 (219)
.. ..+-...+++++.+.|.+++.++.
T Consensus 97 v~~d-~~~~~~~a~~~l~~~g~~~i~~i~ 124 (270)
T cd06296 97 VGAT-NWAGGLAATEHLLELGHRRIGFIT 124 (270)
T ss_pred EEeC-cHHHHHHHHHHHHHcCCCcEEEEc
Confidence 11 234456777888888999988875
No 486
>PRK13753 dihydropteroate synthase; Provisional
Probab=60.00 E-value=51 Score=29.83 Aligned_cols=72 Identities=17% Similarity=0.083 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC-CCC----CCccchhHHHHHh---cCCCEEEcCCCCCCCCCCCccC
Q 027740 67 GQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG-YND----LIVDPRNLEWMRE---ANCPVVADVTHSLQQPAGKKLD 138 (219)
Q Consensus 67 G~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~-~~~----~~~nl~~i~~lk~---~~~pV~~ds~Hs~~~~~~~~~~ 138 (219)
|...+.+.+..-++.+.+.|-. |+=+=.-|+.| +.. ++++ |.++.++. .+.||-+|.-+
T Consensus 19 g~~~~~d~a~~~a~~m~~~GAd-IIDIGgeSTrPga~~vs~eeE~~-Rv~pvI~~l~~~~~~ISIDT~~----------- 85 (279)
T PRK13753 19 SRRLDPAGAVTAAIEMLRVGSD-VVDVGPAASHPDARPVSPADEIR-RIAPLLDALSDQMHRVSIDSFQ----------- 85 (279)
T ss_pred CCCCCHHHHHHHHHHHHHCCCc-EEEECCCCCCCCCCcCCHHHHHH-HHHHHHHHHHhCCCcEEEECCC-----------
Confidence 3334677777777777788864 33222223222 211 1232 44444443 45788777554
Q ss_pred CCCccCCCCcccHHHHHHHHHHcCCc
Q 027740 139 GGGVASGGLRELIPCIARTAIAVGVD 164 (219)
Q Consensus 139 ~~~~~~~G~~~~~~~~~~aAvalGA~ 164 (219)
+.++.+|+..||+
T Consensus 86 -------------~~va~~al~aGad 98 (279)
T PRK13753 86 -------------PETQRYALKRGVG 98 (279)
T ss_pred -------------HHHHHHHHHcCCC
Confidence 4567778888887
No 487
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=59.80 E-value=1.7e+02 Score=28.27 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCCeEe--eeCCcccHHHHhhh-ccccccCCCCCCC---HHHHHHHHhcCCeEEEeCCCCCCHHHHHH
Q 027740 4 GLKILEKVKIAYDIPIVT--DVHETVQCEEVGKV-ADIIQIPAFLCRQ---TDLLVAAAKTGKIINIKKGQFCASSVMVN 77 (219)
Q Consensus 4 gl~~L~~~~~~~Gi~~~t--t~~d~~~~~~l~~~-vd~~kI~S~~~~n---~~LL~~~a~~gkPVilstG~~~t~~ei~~ 77 (219)
.+..|+++++...+|++. =+.|+.|+.....+ .|++-+=.+-+.. ..|++.+-++|+-+++... +.+|++.
T Consensus 98 s~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh---~~~El~~ 174 (454)
T PRK09427 98 SFDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVS---NEEELER 174 (454)
T ss_pred CHHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEEC---CHHHHHH
Confidence 367788888888999997 35688888887777 8877666666653 4688888899999999987 8899998
Q ss_pred HHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh
Q 027740 78 SAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE 116 (219)
Q Consensus 78 A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~ 116 (219)
|++ .|.+=|-+=.| +.....+|+..-..|..
T Consensus 175 al~----~~a~iiGiNnR----dL~t~~vd~~~~~~l~~ 205 (454)
T PRK09427 175 AIA----LGAKVIGINNR----NLRDLSIDLNRTRELAP 205 (454)
T ss_pred HHh----CCCCEEEEeCC----CCccceECHHHHHHHHh
Confidence 865 35543332222 34456788888777765
No 488
>PRK06801 hypothetical protein; Provisional
Probab=59.67 E-value=1.4e+02 Score=27.06 Aligned_cols=175 Identities=14% Similarity=0.142 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCCCeEe-eeCCcccHHHHhhh------ccccccCCCCCC--CH----HHHHHHHh-cCCeEEEeCCCCC
Q 027740 5 LKILEKVKIAYDIPIVT-DVHETVQCEEVGKV------ADIIQIPAFLCR--QT----DLLVAAAK-TGKIINIKKGQFC 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t-t~~d~~~~~~l~~~------vd~~kI~S~~~~--n~----~LL~~~a~-~gkPVilstG~~~ 70 (219)
++.+-+.+++.|-.+.+ .+++.+.+..+-+. .=++|++..... +. ++++.+|+ .+.||.|--.-+.
T Consensus 6 ~~~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~ 85 (286)
T PRK06801 6 LANGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVLNLDHGL 85 (286)
T ss_pred HHHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence 45555667777777766 66777776655432 336777777664 32 34455554 5789999988887
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhH---HHHHh-cCCCEEEcCCCCCCCCCCCccCCCCc-cCC
Q 027740 71 ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNL---EWMRE-ANCPVVADVTHSLQQPAGKKLDGGGV-ASG 145 (219)
Q Consensus 71 t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i---~~lk~-~~~pV~~ds~Hs~~~~~~~~~~~~~~-~~~ 145 (219)
+++.+..|++ .|-.-|++ ++|.+++.. |++.. ..+-+ ++++|-.-..|--+ . +.+.. ...
T Consensus 86 ~~e~i~~Ai~----~GftSVm~--D~S~l~~ee---Ni~~t~~v~~~a~~~gv~VE~ElG~vgg-~-----e~~v~~~~~ 150 (286)
T PRK06801 86 HFEAVVRALR----LGFSSVMF--DGSTLEYEE---NVRQTREVVKMCHAVGVSVEAELGAVGG-D-----EGGALYGEA 150 (286)
T ss_pred CHHHHHHHHH----hCCcEEEE--cCCCCCHHH---HHHHHHHHHHHHHHcCCeEEeecCcccC-C-----CCCcccCCc
Confidence 7888777754 57765655 788765442 44433 33333 67777443333210 0 00000 000
Q ss_pred CC-cccHHHHHHHHH-HcCCcEEEEeeecCCCCCCCCCCCCCChHHHHHHHHH
Q 027740 146 GL-RELIPCIARTAI-AVGVDGVFMEVHDDPLNAPVDGPTQWPLRNLEELLEE 196 (219)
Q Consensus 146 G~-~~~~~~~~~aAv-alGA~GlvIEkH~t~d~a~~D~~~sl~p~el~~lv~~ 196 (219)
|. ..--+..++..+ ..|+|=+-+ .+-.-....+....++++-++++.+.
T Consensus 151 ~~~~~T~pe~a~~f~~~tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~ 201 (286)
T PRK06801 151 DSAKFTDPQLARDFVDRTGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQ 201 (286)
T ss_pred ccccCCCHHHHHHHHHHHCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHh
Confidence 10 011244555555 789995555 44444444444556778777766543
No 489
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=59.52 E-value=1.4e+02 Score=27.08 Aligned_cols=98 Identities=17% Similarity=0.084 Sum_probs=58.4
Q ss_pred HHHHHHHHhc---CCeEEEeCC------CCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCC---CCC-CCccchhHHHHH
Q 027740 49 TDLLVAAAKT---GKIINIKKG------QFCASSVMVNSAEKVRLAGNPNVMVCERGTMFG---YND-LIVDPRNLEWMR 115 (219)
Q Consensus 49 ~~LL~~~a~~---gkPVilstG------~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~---~~~-~~~nl~~i~~lk 115 (219)
.+.++++-+. +.||.++-. .+.+++|....+..+...|-. .+=++.|..++ ++. ...++.....+|
T Consensus 208 ~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd-~iev~~g~~~~~~~~~~~~~~~~~~~~~ir 286 (336)
T cd02932 208 LEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVD-LIDVSSGGNSPAQKIPVGPGYQVPFAERIR 286 (336)
T ss_pred HHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCC-EEEECCCCCCcccccCCCccccHHHHHHHH
Confidence 4677777653 579999843 233789998888888877653 22233332211 111 112455666778
Q ss_pred h-cCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcC-CcEEEEe
Q 027740 116 E-ANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVG-VDGVFME 169 (219)
Q Consensus 116 ~-~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalG-A~GlvIE 169 (219)
+ .++||+....-. . +..+..+++.| +|++.+=
T Consensus 287 ~~~~iPVi~~G~i~-----------------t-----~~~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 287 QEAGIPVIAVGLIT-----------------D-----PEQAEAILESGRADLVALG 320 (336)
T ss_pred hhCCCCEEEeCCCC-----------------C-----HHHHHHHHHcCCCCeehhh
Confidence 7 899998743332 1 45566777777 7855443
No 490
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=59.47 E-value=57 Score=25.61 Aligned_cols=82 Identities=13% Similarity=0.023 Sum_probs=55.5
Q ss_pred ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHH-
Q 027740 36 ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWM- 114 (219)
Q Consensus 36 vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~l- 114 (219)
.+-+-||-+|....+.++...+.|.+++... .- .-.+.+.|++++.+.|..+|+++-.... +.+=-|.+|..|
T Consensus 36 ~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p-~k-D~TD~e~Al~~~~~~~~~~i~v~Ga~Gg----R~DH~lanl~~l~ 109 (123)
T PF04263_consen 36 KPDLIIGDFDSISPEVLEFYKSKGVEIIHFP-EK-DYTDLEKALEYAIEQGPDEIIVLGALGG----RFDHTLANLNLLY 109 (123)
T ss_dssp --SEEEC-SSSS-HHHHHHHHHCTTEEEEE--ST-TS-HHHHHHHHHHHTTTSEEEEES-SSS----SHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCChHHHHHHHhhccceeccc-cc-ccCHHHHHHHHHHHCCCCEEEEEecCCC----cHHHHHHHHHHHH
Confidence 7888999999999999999999999988777 44 6889999999999999998887766432 211224444444
Q ss_pred --HhcCCCEEE
Q 027740 115 --REANCPVVA 123 (219)
Q Consensus 115 --k~~~~pV~~ 123 (219)
++.+++|.+
T Consensus 110 ~~~~~~~~i~l 120 (123)
T PF04263_consen 110 KYKKRGIKIVL 120 (123)
T ss_dssp HHHTTTSEEEE
T ss_pred HHHHcCCeEEE
Confidence 334666644
No 491
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=59.35 E-value=99 Score=26.96 Aligned_cols=109 Identities=13% Similarity=0.208 Sum_probs=65.0
Q ss_pred CcccHHHHhhhccccccCCCCCCCHHHHHHHH------------hc---CCeEEEeCCCCCCHHHHHHHHHHHHH-cCCC
Q 027740 25 ETVQCEEVGKVADIIQIPAFLCRQTDLLVAAA------------KT---GKIINIKKGQFCASSVMVNSAEKVRL-AGNP 88 (219)
Q Consensus 25 d~~~~~~l~~~vd~~kI~S~~~~n~~LL~~~a------------~~---gkPVilstG~~~t~~ei~~A~e~i~~-~Gn~ 88 (219)
|..+++.+.++.++.-|. +-.+|..|++..+ +. ++||-+-.=.. +.+++..-++.+.+ -| +
T Consensus 6 DtAd~~~i~~~~~~~~i~-GvTTNPsll~k~g~~~~~~~~~~i~~~i~~~~~vs~ev~~~-~~~~mi~eA~~l~~~~~-~ 82 (222)
T PRK12656 6 DTLNLEAIKKWHEILPLA-GVTSNPSIAKKEGDIDFFERIREVREIIGDEASIHVQVVAQ-DYEGILKDAHEIRRQCG-D 82 (222)
T ss_pred ecCCHHHHHHHHhcCCcc-eEeCCHHHHHhcCCCCHHHHHHHHHHHhCCCCcEEEEEEEC-CHHHHHHHHHHHHHHhC-C
Confidence 555666666665555443 3345555555433 32 34776555333 78999888888864 44 5
Q ss_pred cEEE-EeecCCCCCCCCCccchhHHHHHhcCCCEEEcCCCCCCCCCCCccCCCCccCCCCcccHHHHHHHHHHcCCcEEE
Q 027740 89 NVMV-CERGTMFGYNDLIVDPRNLEWMREANCPVVADVTHSLQQPAGKKLDGGGVASGGLRELIPCIARTAIAVGVDGVF 167 (219)
Q Consensus 89 ~i~L-~~cgs~~~~~~~~~nl~~i~~lk~~~~pV~~ds~Hs~~~~~~~~~~~~~~~~~G~~~~~~~~~~aAvalGA~Glv 167 (219)
|+++ +-+ .. --+.++..|++.|++|-+=.-.| ...+..|...||+ +
T Consensus 83 nv~VKIP~------T~--~Gl~Ai~~L~~~Gi~vn~T~ifs-----------------------~~Qa~~Aa~aGa~--y 129 (222)
T PRK12656 83 DVYIKVPV------TP--AGLAAIKTLKAEGYHITATAIYT-----------------------VFQGLLAIEAGAD--Y 129 (222)
T ss_pred CEEEEeCC------CH--HHHHHHHHHHHCCCceEEeeeCC-----------------------HHHHHHHHHCCCC--E
Confidence 6666 222 11 25788888877788876411122 4567788889997 5
Q ss_pred Ee
Q 027740 168 ME 169 (219)
Q Consensus 168 IE 169 (219)
|=
T Consensus 130 vs 131 (222)
T PRK12656 130 LA 131 (222)
T ss_pred Ee
Confidence 43
No 492
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=59.32 E-value=49 Score=31.05 Aligned_cols=71 Identities=14% Similarity=0.088 Sum_probs=49.9
Q ss_pred HHHHHhcCCCeEe-eeCCcccHHHHhhh-ccccccCCCCCCC-------HHHHHHHHh---cCCeEEEeCCCCCCHHHHH
Q 027740 9 EKVKIAYDIPIVT-DVHETVQCEEVGKV-ADIIQIPAFLCRQ-------TDLLVAAAK---TGKIINIKKGQFCASSVMV 76 (219)
Q Consensus 9 ~~~~~~~Gi~~~t-t~~d~~~~~~l~~~-vd~~kI~S~~~~n-------~~LL~~~a~---~gkPVilstG~~~t~~ei~ 76 (219)
....+..++|++. .+.+.+++..+.+. +|.+.|+..--+| ...|.++.+ ...||+++-|.. +-.++.
T Consensus 217 ~wlr~~~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr-~G~Dv~ 295 (367)
T PLN02493 217 QWLQTITKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVR-RGTDVF 295 (367)
T ss_pred HHHHhccCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcC-cHHHHH
Confidence 3334457888887 88999999999998 9998888776665 344544433 236777777777 777776
Q ss_pred HHHH
Q 027740 77 NSAE 80 (219)
Q Consensus 77 ~A~e 80 (219)
.|+.
T Consensus 296 KALA 299 (367)
T PLN02493 296 KALA 299 (367)
T ss_pred HHHH
Confidence 6643
No 493
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=59.26 E-value=1.4e+02 Score=26.93 Aligned_cols=70 Identities=9% Similarity=0.048 Sum_probs=42.5
Q ss_pred HHHHHHhc--CCeEEEe-----CCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEE
Q 027740 51 LLVAAAKT--GKIINIK-----KGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVV 122 (219)
Q Consensus 51 LL~~~a~~--gkPVils-----tG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~ 122 (219)
.++.+.+. ++||++| .|.-.+=..+..+++.+...+....+.+-|+ . | + .=+..+..++. .+.|++
T Consensus 171 ~~~~~~~~~~~~pv~is~~~~~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC~-~---p-~-~~~~~l~~~~~~~~~pl~ 244 (304)
T PRK09485 171 LVELLKEEFPGVPAWLSFTLRDGTHISDGTPLAEAAALLAASPQVVAVGVNCT-A---P-E-LVTAAIAALRAVTDKPLV 244 (304)
T ss_pred HHHHHHHhcCCCcEEEEEEeCCCCcCCCCCCHHHHHHHHhcCCCceEEEecCC-C---H-H-HHHHHHHHHHhccCCcEE
Confidence 34444435 8999985 2322233456677777765556678899996 2 1 1 12366666766 578888
Q ss_pred EcCC
Q 027740 123 ADVT 126 (219)
Q Consensus 123 ~ds~ 126 (219)
+.|.
T Consensus 245 ~~PN 248 (304)
T PRK09485 245 VYPN 248 (304)
T ss_pred EECC
Confidence 7655
No 494
>PRK06354 pyruvate kinase; Provisional
Probab=59.22 E-value=70 Score=31.96 Aligned_cols=106 Identities=14% Similarity=0.183 Sum_probs=72.0
Q ss_pred HHHHHHHHHHh---cCCCeEeeeCCcccHHHHhhh---ccccccCCCCCC-----------CHHHHHHHHhcCCeEEEeC
Q 027740 4 GLKILEKVKIA---YDIPIVTDVHETVQCEEVGKV---ADIIQIPAFLCR-----------QTDLLVAAAKTGKIINIKK 66 (219)
Q Consensus 4 gl~~L~~~~~~---~Gi~~~tt~~d~~~~~~l~~~---vd~~kI~S~~~~-----------n~~LL~~~a~~gkPVilst 66 (219)
-+..+++|.++ ..+.+++-+-..+.++-+.+. +|.+.||-+|+. +..+++.+-+.|||||+.|
T Consensus 205 dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~AT 284 (590)
T PRK06354 205 DVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITAT 284 (590)
T ss_pred HHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEc
Confidence 45677788743 357788888888777766654 889999988765 3467777788899999977
Q ss_pred CCC--------CCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHH
Q 027740 67 GQF--------CASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMR 115 (219)
Q Consensus 67 G~~--------~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk 115 (219)
-|- .|=.|+-..+..+. -|..-++|..-++.=.|| ..++.+|+
T Consensus 285 qmLeSM~~~p~PTRAEvsDVaNav~-DG~DavMLS~ETA~G~yP-----veaV~~m~ 335 (590)
T PRK06354 285 QMLDSMQRNPRPTRAEASDVANAIL-DGTDAVMLSNETAAGDYP-----VEAVQTMA 335 (590)
T ss_pred hhHHHHhhCCCCCchhhHHHHHHhh-hCCcEEEecccccCCCCH-----HHHHHHHH
Confidence 653 35567766666665 467667776555432455 34555553
No 495
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=59.11 E-value=1.2e+02 Score=26.41 Aligned_cols=90 Identities=10% Similarity=0.024 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCCeEe--eeCCccc---HHHHhhh-ccccccCCCCCCCHHHHHHHHhcCCeEEEeCCCCCC-------
Q 027740 5 LKILEKVKIAYDIPIVT--DVHETVQ---CEEVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIINIKKGQFCA------- 71 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t--t~~d~~~---~~~l~~~-vd~~kI~S~~~~n~~LL~~~a~~gkPVilstG~~~t------- 71 (219)
+.-+.+.+++.|..++- +-.+++. ++.+.+. ||-+-+.+....+-.+.+ ..+.+.||++-....-.
T Consensus 20 i~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~~~~l~~-~~~~~iPvV~~~~~~~~~~~~~~V 98 (279)
T PF00532_consen 20 IRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSENDDEELRR-LIKSGIPVVLIDRYIDNPEGVPSV 98 (279)
T ss_dssp HHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCTCHHHHH-HHHTTSEEEEESS-SCTTCTSCEE
T ss_pred HHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCChHHHHH-HHHcCCCEEEEEeccCCcccCCEE
Confidence 56678889999987653 3334332 3334444 888888877766556444 44559999987665211
Q ss_pred ----HHHHHHHHHHHHHcCCCc-EEEEee
Q 027740 72 ----SSVMVNSAEKVRLAGNPN-VMVCER 95 (219)
Q Consensus 72 ----~~ei~~A~e~i~~~Gn~~-i~L~~c 95 (219)
.+-...|++++.+.|.++ |.++-.
T Consensus 99 ~~D~~~a~~~a~~~Li~~Gh~~~I~~i~~ 127 (279)
T PF00532_consen 99 YIDNYEAGYEATEYLIKKGHRRPIAFIGG 127 (279)
T ss_dssp EEEHHHHHHHHHHHHHHTTCCSTEEEEEE
T ss_pred EEcchHHHHHHHHHHHhcccCCeEEEEec
Confidence 233457888999999999 866654
No 496
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=59.08 E-value=43 Score=31.80 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=39.9
Q ss_pred HHHHhcCC-eEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCC
Q 027740 53 VAAAKTGK-IINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSL 129 (219)
Q Consensus 53 ~~~a~~gk-PVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~ 129 (219)
+.+.+.|. ++.+. -.. ++++++.++. .+..+++++..++ +.-...|+..|..+-+ .++++++|.+|+.
T Consensus 127 ~~l~~~Gi~v~~vd-~~~-d~e~l~~~l~-----~~tk~V~~e~~~N--p~~~v~di~~I~~la~~~gi~livD~t~a~ 196 (437)
T PRK05613 127 VTLNRLGIEVTFVE-NPD-DPESWQAAVQ-----PNTKAFFGETFAN--PQADVLDIPAVAEVAHRNQVPLIVDNTIAT 196 (437)
T ss_pred HHHHhcCeEEEEEC-CCC-CHHHHHHhCC-----ccCeEEEEECCCC--CCCcccCHHHHHHHHHHcCCeEEEECCCcc
Confidence 33445563 44443 112 5666555432 2345666654333 1124578999988866 8999999999974
No 497
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=59.03 E-value=50 Score=30.51 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCeEe-ee---CCcccHHHHhhh-ccccccCCCCCCC-------------------------HHHHHH
Q 027740 5 LKILEKVKIAYDIPIVT-DV---HETVQCEEVGKV-ADIIQIPAFLCRQ-------------------------TDLLVA 54 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~t-t~---~d~~~~~~l~~~-vd~~kI~S~~~~n-------------------------~~LL~~ 54 (219)
+..+++.+++.++|++. .+ .+.+.+..+.+. +|++-|+.+-=+| ...|.+
T Consensus 175 le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~ 254 (352)
T PRK05437 175 LDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLE 254 (352)
T ss_pred HHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHH
Confidence 46788888888999996 22 567777788887 9998886642111 124444
Q ss_pred HHh--cCCeEEEeCCCCCCHHHHHHHHH
Q 027740 55 AAK--TGKIINIKKGQFCASSVMVNSAE 80 (219)
Q Consensus 55 ~a~--~gkPVilstG~~~t~~ei~~A~e 80 (219)
+.+ .+.||+.+-|.. +..++..++.
T Consensus 255 i~~~~~~ipvia~GGI~-~~~dv~k~l~ 281 (352)
T PRK05437 255 ARSLLPDLPIIASGGIR-NGLDIAKALA 281 (352)
T ss_pred HHHhcCCCeEEEECCCC-CHHHHHHHHH
Confidence 445 368999988888 8888777654
No 498
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=59.00 E-value=83 Score=28.97 Aligned_cols=52 Identities=23% Similarity=0.146 Sum_probs=34.9
Q ss_pred CHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-cCCCEEEcCCCCC
Q 027740 71 ASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-ANCPVVADVTHSL 129 (219)
Q Consensus 71 t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~~~pV~~ds~Hs~ 129 (219)
++++++++++ .+..+++++..++. .. ...|+..|..+.+ .+++|++|.+|..
T Consensus 120 d~~~le~~i~-----~~tklv~le~psnp-tg-~v~dl~~I~~la~~~g~~vivD~a~~~ 172 (378)
T TIGR01329 120 DLDKVKAALG-----PKTKLVLLESPTNP-LQ-KIVDIRKISEMAHAQNALVVVDNTMMS 172 (378)
T ss_pred CHHHHHHhcC-----cCceEEEEECCCCC-CC-eeecHHHHHHHHHHcCCEEEEECCCcc
Confidence 6777766543 34567776654441 21 3468888888765 8999999999863
No 499
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=59.00 E-value=1.1e+02 Score=25.67 Aligned_cols=90 Identities=12% Similarity=-0.004 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCCeEeeeCC----cc-c---HHHHhhh-ccccccCCCCCCC-HHHHHHHHhcCCeEEEeCCCC-C---
Q 027740 5 LKILEKVKIAYDIPIVTDVHE----TV-Q---CEEVGKV-ADIIQIPAFLCRQ-TDLLVAAAKTGKIINIKKGQF-C--- 70 (219)
Q Consensus 5 l~~L~~~~~~~Gi~~~tt~~d----~~-~---~~~l~~~-vd~~kI~S~~~~n-~~LL~~~a~~gkPVilstG~~-~--- 70 (219)
+.-+.+.++++|..++....+ +. + ++.+.+. +|.+-|.+.+-.+ .+.++.+.+.+.||++-.... .
T Consensus 18 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~ 97 (275)
T cd06320 18 KEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVNDKLIPNAT 97 (275)
T ss_pred HHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEECCCCCCccc
Confidence 345778889999888765432 21 2 2223333 7776665543332 466788888899988653211 0
Q ss_pred ------CHHHHHHHHHHHHHc--CCCcEEEEe
Q 027740 71 ------ASSVMVNSAEKVRLA--GNPNVMVCE 94 (219)
Q Consensus 71 ------t~~ei~~A~e~i~~~--Gn~~i~L~~ 94 (219)
.-+-...+++++... |..++.++-
T Consensus 98 ~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~ 129 (275)
T cd06320 98 AFVGTDNKANGVRGAEWIIDKLAEGGKVAIIE 129 (275)
T ss_pred eEEecCcHHHHHHHHHHHHHHhCCCceEEEEe
Confidence 112355677788777 777888764
No 500
>PRK08114 cystathionine beta-lyase; Provisional
Probab=58.66 E-value=45 Score=31.40 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=41.9
Q ss_pred HHhcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCCCCccchhHHHHHh-c--CCCEEEcCCCCC
Q 027740 55 AAKTGKIINIKKGQFCASSVMVNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMRE-A--NCPVVADVTHSL 129 (219)
Q Consensus 55 ~a~~gkPVilstG~~~t~~ei~~A~e~i~~~Gn~~i~L~~cgs~~~~~~~~~nl~~i~~lk~-~--~~pV~~ds~Hs~ 129 (219)
+.+.|..|..=.. . +.++++.+++ .+..++.++..++. .-...|+..|..+.+ . ++++++|.+|+.
T Consensus 122 l~~~Gi~v~~vd~-~-d~~~l~~~l~-----~~TrlV~~EtpsNp--~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~ 190 (395)
T PRK08114 122 LSKLGVTTTWFDP-L-IGADIAKLIQ-----PNTKVVFLESPGSI--TMEVHDVPAIVAAVRSVNPDAVIMIDNTWAA 190 (395)
T ss_pred HHhcCcEEEEECC-C-CHHHHHHhcC-----CCceEEEEECCCCC--CCEeecHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 3445655554332 2 4566555432 35678888876652 224578999888765 5 499999999984
Done!