Query 027741
Match_columns 219
No_of_seqs 179 out of 1095
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 14:27:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027741.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027741hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 2E-37 4.4E-42 263.3 20.1 181 4-185 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 5.3E-37 1.1E-41 257.7 19.7 189 4-193 12-334 (336)
3 PRK09912 L-glyceraldehyde 3-ph 100.0 1.7E-33 3.7E-38 242.6 20.2 181 2-185 11-334 (346)
4 TIGR01293 Kv_beta voltage-depe 100.0 3.4E-33 7.4E-38 238.2 18.3 174 6-182 1-316 (317)
5 PLN02587 L-galactose dehydroge 100.0 2.9E-33 6.2E-38 238.3 17.7 179 6-185 1-301 (314)
6 PRK10625 tas putative aldo-ket 100.0 5E-32 1.1E-36 233.5 18.9 177 4-184 1-339 (346)
7 COG0656 ARA1 Aldo/keto reducta 100.0 1.2E-32 2.6E-37 227.2 13.4 170 4-186 3-266 (280)
8 PRK10376 putative oxidoreducta 100.0 2.7E-31 5.8E-36 223.9 19.3 182 1-185 1-289 (290)
9 COG1453 Predicted oxidoreducta 100.0 5.6E-32 1.2E-36 226.5 11.3 193 4-196 1-303 (391)
10 cd06660 Aldo_ket_red Aldo-keto 100.0 1.9E-30 4.1E-35 217.7 18.4 173 6-181 1-284 (285)
11 KOG1577 Aldo/keto reductase fa 100.0 4.4E-30 9.6E-35 212.4 14.1 167 6-186 6-287 (300)
12 KOG1576 Predicted oxidoreducta 100.0 1E-29 2.3E-34 204.6 14.7 171 1-173 19-310 (342)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 8.2E-29 1.8E-33 207.3 14.4 171 1-185 1-263 (275)
14 PF00248 Aldo_ket_red: Aldo/ke 100.0 6.7E-29 1.4E-33 208.1 13.5 163 18-183 1-282 (283)
15 PRK11172 dkgB 2,5-diketo-D-glu 100.0 4.4E-28 9.5E-33 202.1 16.4 159 14-185 1-253 (267)
16 COG4989 Predicted oxidoreducta 100.0 1.9E-27 4.1E-32 190.1 14.8 177 4-185 1-294 (298)
17 PRK14863 bifunctional regulato 99.9 6.3E-26 1.4E-30 191.3 12.4 165 13-180 2-278 (292)
18 PF11242 DUF2774: Protein of u 65.5 9.8 0.00021 24.2 3.0 23 121-143 15-37 (63)
19 COG0673 MviM Predicted dehydro 52.9 34 0.00074 28.9 5.4 67 120-186 41-117 (342)
20 PF00356 LacI: Bacterial regul 44.9 38 0.00081 20.1 3.2 42 122-169 2-43 (46)
21 COG1748 LYS9 Saccharopine dehy 44.4 24 0.00053 31.2 3.2 25 37-61 79-103 (389)
22 COG3623 SgaU Putative L-xylulo 43.0 60 0.0013 26.8 4.9 76 11-87 65-155 (287)
23 COG3215 PilZ Tfp pilus assembl 42.3 38 0.00082 24.0 3.2 55 35-91 18-72 (117)
24 PF14502 HTH_41: Helix-turn-he 39.8 33 0.00072 20.7 2.3 30 119-148 6-37 (48)
25 PF01402 RHH_1: Ribbon-helix-h 39.0 69 0.0015 17.6 4.2 23 117-139 9-31 (39)
26 PF10668 Phage_terminase: Phag 38.8 84 0.0018 19.9 4.2 17 121-137 24-40 (60)
27 PF13518 HTH_28: Helix-turn-he 38.1 44 0.00094 19.6 2.8 22 121-143 14-35 (52)
28 COG1026 Predicted Zn-dependent 36.7 2.1E+02 0.0045 28.7 8.2 79 107-185 408-494 (978)
29 PRK05406 LamB/YcsF family prot 34.7 2.6E+02 0.0057 23.1 9.3 116 20-158 13-149 (246)
30 COG0825 AccA Acetyl-CoA carbox 34.4 72 0.0016 27.1 4.3 111 37-152 137-265 (317)
31 PF01118 Semialdhyde_dh: Semia 33.7 60 0.0013 23.1 3.4 27 35-61 75-101 (121)
32 PF11020 DUF2610: Domain of un 33.1 1.2E+02 0.0025 20.5 4.3 27 114-140 49-75 (82)
33 TIGR03070 couple_hipB transcri 32.6 52 0.0011 19.5 2.6 23 119-141 4-26 (58)
34 PF00388 PI-PLC-X: Phosphatidy 32.4 36 0.00077 25.3 2.1 18 40-57 29-46 (146)
35 PF13167 GTP-bdg_N: GTP-bindin 31.1 29 0.00063 24.2 1.3 65 118-184 9-80 (95)
36 PRK05718 keto-hydroxyglutarate 30.9 2.8E+02 0.0061 22.2 8.7 54 34-89 24-77 (212)
37 TIGR01761 thiaz-red thiazoliny 30.2 1.6E+02 0.0034 25.6 5.9 66 120-186 39-114 (343)
38 PF08418 Pol_alpha_B_N: DNA po 29.5 57 0.0012 26.7 3.0 49 115-164 8-59 (253)
39 smart00148 PLCXc Phospholipase 29.3 47 0.001 24.5 2.2 18 40-57 31-48 (135)
40 PF01408 GFO_IDH_MocA: Oxidore 29.2 48 0.001 23.2 2.3 64 122-186 39-112 (120)
41 COG4464 CapC Capsular polysacc 29.0 1.1E+02 0.0024 25.0 4.4 31 33-63 16-46 (254)
42 KOG0556 Aspartyl-tRNA syntheta 28.0 2.9E+02 0.0063 24.9 7.1 49 37-90 381-429 (533)
43 PRK08446 coproporphyrinogen II 27.9 2E+02 0.0044 24.8 6.3 60 16-75 109-173 (350)
44 KOG0173 20S proteasome, regula 27.2 52 0.0011 27.2 2.2 37 15-51 158-200 (271)
45 PRK07379 coproporphyrinogen II 26.9 1.8E+02 0.0039 25.7 5.8 60 16-75 126-190 (400)
46 PF01476 LysM: LysM domain; I 25.9 75 0.0016 17.8 2.3 18 120-137 7-24 (44)
47 KOG0693 Myo-inositol-1-phospha 25.8 99 0.0021 27.2 3.8 81 117-209 208-289 (512)
48 PF07912 ERp29_N: ERp29, N-ter 25.0 1.1E+02 0.0023 22.6 3.3 34 51-86 25-60 (126)
49 PRK11675 LexA regulated protei 24.6 1E+02 0.0022 21.3 3.0 23 117-139 60-82 (90)
50 PF10723 RepB-RCR_reg: Replica 23.9 1.5E+02 0.0033 20.1 3.8 26 117-142 51-76 (84)
51 PF12651 RHH_3: Ribbon-helix-h 23.9 1.4E+02 0.0031 17.4 3.2 21 117-137 12-32 (44)
52 TIGR01378 thi_PPkinase thiamin 23.4 1.9E+02 0.0041 22.9 4.9 39 129-167 70-110 (203)
53 PF13653 GDPD_2: Glycerophosph 22.8 86 0.0019 16.9 1.9 17 40-56 10-26 (30)
54 PF13467 RHH_4: Ribbon-helix-h 22.5 1.3E+02 0.0028 19.5 3.1 27 118-144 22-48 (67)
55 PRK08286 cbiC cobalt-precorrin 21.9 1.2E+02 0.0025 24.6 3.3 33 121-153 107-139 (214)
56 PLN02746 hydroxymethylglutaryl 21.9 2.4E+02 0.0053 24.5 5.6 34 29-62 189-222 (347)
57 PRK08208 coproporphyrinogen II 21.7 2.4E+02 0.0052 25.1 5.7 60 16-75 152-216 (430)
58 TIGR02631 xylA_Arthro xylose i 21.5 2.3E+02 0.0049 25.0 5.4 59 17-75 7-79 (382)
59 PRK10945 gene expression modul 21.2 2.1E+02 0.0046 18.8 3.8 31 153-183 17-47 (72)
60 PF02570 CbiC: Precorrin-8X me 20.8 2.1E+02 0.0045 22.8 4.6 45 120-165 93-137 (198)
61 PF07027 DUF1318: Protein of u 20.8 2.7E+02 0.0058 19.4 4.6 29 114-142 45-73 (95)
62 PF03435 Saccharop_dh: Sacchar 20.3 75 0.0016 27.7 2.1 21 38-58 79-99 (386)
63 PF09391 DUF2000: Protein of u 20.3 2.3E+02 0.0049 21.0 4.4 47 35-81 62-108 (133)
64 PRK15052 D-tagatose-1,6-bispho 20.2 1.6E+02 0.0035 26.4 4.1 46 13-59 76-128 (421)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=2e-37 Score=263.31 Aligned_cols=181 Identities=38% Similarity=0.619 Sum_probs=148.5
Q ss_pred cceEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhcCC-CCCeE
Q 027741 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF-RERAE 82 (219)
Q Consensus 4 m~~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~-R~~~~ 82 (219)
|++|+||++|++||+||||||.+|+.+. ..+.+++.++|++|+|+|||+||||++||.|.||++||++|+... |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~-~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTD-DEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCC-chhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 7899999999999999999999986422 234457788999999999999999999999999999999999833 89999
Q ss_pred EEeeecccccC-CC-----------------------------cccCCCC------------------------------
Q 027741 83 LATKFGIGIVD-GK-----------------------------YGYHGDP------------------------------ 102 (219)
Q Consensus 83 I~TK~~~~~~~-~~-----------------------------~~~~~~~------------------------------ 102 (219)
|+||++....+ .. +++|...
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999877532 00 0011110
Q ss_pred -----------------------------------------------------C----C-----------CCCCCCChhh
Q 027741 103 -----------------------------------------------------H----L-----------PRFQPGNLEH 114 (219)
Q Consensus 103 -----------------------------------------------------~----~-----------~~~~~~~~~~ 114 (219)
+ . +.+.....+.
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~~~~~r~~~~~~~~~~~~~~ 239 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPGPEGSRASELPRFQRELTER 239 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCCcchhhccccccchhhhhHH
Confidence 0 0 1111222344
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 027741 115 NQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASA 185 (219)
Q Consensus 115 ~~~~~~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~~~L~~e~~~~l~~~~~~ 185 (219)
+..+...+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|+++++..|++++++.|++....
T Consensus 240 ~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 240 GLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 55677889999999999999999999999999999999999999999999999999999999999988764
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=5.3e-37 Score=257.71 Aligned_cols=189 Identities=42% Similarity=0.673 Sum_probs=155.9
Q ss_pred cceEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhc--CCCCCe
Q 027741 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERA 81 (219)
Q Consensus 4 m~~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~ 81 (219)
|+++.+|++|++||++|||+|.+. .|+...+++++.+++++|+|+|+|+||||++||+|.||.++|++|++ .+|+++
T Consensus 12 ~~~~~lg~~gl~Vs~lglG~m~~~-~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~v 90 (336)
T KOG1575|consen 12 MLRRKLGNSGLKVSPLGLGCMGWT-TFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDKV 90 (336)
T ss_pred ceeeeccCCCceecceeecceeee-ccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCcE
Confidence 899999999999999999997553 35555789999999999999999999999999999999999999998 789999
Q ss_pred EEEeeecccccCCC---------------------------cccCC-CC-------------------------------
Q 027741 82 ELATKFGIGIVDGK---------------------------YGYHG-DP------------------------------- 102 (219)
Q Consensus 82 ~I~TK~~~~~~~~~---------------------------~~~~~-~~------------------------------- 102 (219)
+|+||++....... .+.|. ++
T Consensus 91 viaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~sa~ 170 (336)
T KOG1575|consen 91 VIATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEWSAE 170 (336)
T ss_pred EEEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccCCHH
Confidence 99999987652110 00111 00
Q ss_pred ---------------------------------------------CCC----CCCC---------------------CCh
Q 027741 103 ---------------------------------------------HLP----RFQP---------------------GNL 112 (219)
Q Consensus 103 ---------------------------------------------~~~----~~~~---------------------~~~ 112 (219)
+.| .++. ...
T Consensus 171 ~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~~~~ 250 (336)
T KOG1575|consen 171 EIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLSPQT 250 (336)
T ss_pred HHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccccccccccc
Confidence 000 0000 000
Q ss_pred ---hhhHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCC
Q 027741 113 ---EHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASADNVK 189 (219)
Q Consensus 113 ---~~~~~~~~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~~~L~~e~~~~l~~~~~~~~~~ 189 (219)
..++.+.+++.++|+++|+|++|+||+|+++++.+++||||+++++||+||++|++..|+++++.+|+++.++....
T Consensus 251 ~~~~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~~~~~~ 330 (336)
T KOG1575|consen 251 EEGDKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIIDKILGF 330 (336)
T ss_pred chhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhccccCc
Confidence 33556788999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred CCCC
Q 027741 190 GDRY 193 (219)
Q Consensus 190 ~~~~ 193 (219)
+.+|
T Consensus 331 ~~~~ 334 (336)
T KOG1575|consen 331 GPRS 334 (336)
T ss_pred CCCC
Confidence 6554
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.7e-33 Score=242.61 Aligned_cols=181 Identities=25% Similarity=0.442 Sum_probs=141.5
Q ss_pred CccceEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCC--CcHHHHHHHHhhc---C
Q 027741 2 ATVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGP--HTNEILLGKAFKG---G 76 (219)
Q Consensus 2 ~~m~~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~--g~sE~~lG~al~~---~ 76 (219)
+.|++|+||++|++||+||||||+. ||...+.+++.++|++|+++|||+||||+.||+ |.||++||++|++ .
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccC
Confidence 4599999999999999999999973 343345677899999999999999999999995 8999999999986 2
Q ss_pred CCCCeEEEeeecccccC------CC----------------------cccCCC----C----------------------
Q 027741 77 FRERAELATKFGIGIVD------GK----------------------YGYHGD----P---------------------- 102 (219)
Q Consensus 77 ~R~~~~I~TK~~~~~~~------~~----------------------~~~~~~----~---------------------- 102 (219)
.|++++|+||++..... .. ..+|.. +
T Consensus 88 ~Rd~~~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iGv 167 (346)
T PRK09912 88 YRDELIISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVGI 167 (346)
T ss_pred CCCeEEEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEe
Confidence 59999999998742100 00 001110 0
Q ss_pred ------------------------------------------------------CCC----CCCC---------------
Q 027741 103 ------------------------------------------------------HLP----RFQP--------------- 109 (219)
Q Consensus 103 ------------------------------------------------------~~~----~~~~--------------- 109 (219)
..| .+..
T Consensus 168 Sn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~~~~~~~~~~~ 247 (346)
T PRK09912 168 SSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNGIPQDSRMHRE 247 (346)
T ss_pred cCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCCCCCCcccccc
Confidence 000 0000
Q ss_pred ---------CC-hhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcC-CCCCHHHHHH
Q 027741 110 ---------GN-LEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALS-VKITPEEMAE 178 (219)
Q Consensus 110 ---------~~-~~~~~~~~~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~-~~L~~e~~~~ 178 (219)
.. ...+....+.+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|+++++ ++|+++++++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~~~ 327 (346)
T PRK09912 248 GNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEELAQ 327 (346)
T ss_pred ccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHHHH
Confidence 00 011223457889999999999999999999999999999999999999999999984 8999999999
Q ss_pred HHHHhcC
Q 027741 179 LEAIASA 185 (219)
Q Consensus 179 l~~~~~~ 185 (219)
|+++.++
T Consensus 328 l~~~~~~ 334 (346)
T PRK09912 328 IDQHIAD 334 (346)
T ss_pred HHHhhCc
Confidence 9998865
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=3.4e-33 Score=238.16 Aligned_cols=174 Identities=28% Similarity=0.427 Sum_probs=137.0
Q ss_pred eEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhc--CCCCCeEE
Q 027741 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAEL 83 (219)
Q Consensus 6 ~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~I 83 (219)
||+||++|++||+||||||++ +|...+.+++.++|++|+++|||+||||++||.|.||++||++|+. ..|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 588999999999999999974 3334567889999999999999999999999999999999999985 36999999
Q ss_pred Eeeeccccc-----C-CC---------------------cccCCC----C------------------------------
Q 027741 84 ATKFGIGIV-----D-GK---------------------YGYHGD----P------------------------------ 102 (219)
Q Consensus 84 ~TK~~~~~~-----~-~~---------------------~~~~~~----~------------------------------ 102 (219)
+||++.... . .. ..+|.. +
T Consensus 78 aTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~~l 157 (317)
T TIGR01293 78 TTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSMEI 157 (317)
T ss_pred EeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHHHH
Confidence 999853210 0 00 011111 0
Q ss_pred -----------------------------------------------CCC--------CCCCC-----------------
Q 027741 103 -----------------------------------------------HLP--------RFQPG----------------- 110 (219)
Q Consensus 103 -----------------------------------------------~~~--------~~~~~----------------- 110 (219)
+.| .+...
T Consensus 158 ~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~ 237 (317)
T TIGR01293 158 MEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSGIPPYSRATLKGYQWLKD 237 (317)
T ss_pred HHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCCCCCcccccccccchhhh
Confidence 000 00000
Q ss_pred -----ChhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcCC--CCCHHHHHHHHHH
Q 027741 111 -----NLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSV--KITPEEMAELEAI 182 (219)
Q Consensus 111 -----~~~~~~~~~~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~~--~L~~e~~~~l~~~ 182 (219)
.........+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++++ +|+++++++|+++
T Consensus 238 ~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~~~ 316 (317)
T TIGR01293 238 KILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEIDSI 316 (317)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 00012334577999999999999999999999999999999999999999999999997 9999999999975
No 5
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=2.9e-33 Score=238.34 Aligned_cols=179 Identities=31% Similarity=0.398 Sum_probs=141.9
Q ss_pred eEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhc--CCCCCeEE
Q 027741 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAEL 83 (219)
Q Consensus 6 ~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~I 83 (219)
||+||+||++||.||||||++|..|+. .+.+++.++|++|+++|||+||||++||.|.||+.+|++|++ .+|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 689999999999999999999876763 567889999999999999999999999999999999999987 47999999
Q ss_pred Eeeeccccc--CCC----------------------cccCCC-------C------------------------------
Q 027741 84 ATKFGIGIV--DGK----------------------YGYHGD-------P------------------------------ 102 (219)
Q Consensus 84 ~TK~~~~~~--~~~----------------------~~~~~~-------~------------------------------ 102 (219)
+||++.... ... ..+|.. +
T Consensus 80 ~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~ 159 (314)
T PLN02587 80 STKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGLPLAIF 159 (314)
T ss_pred EeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCCCHHHH
Confidence 999974311 000 011211 0
Q ss_pred --------------------------------------------CCC----CCCCC-------ChhhhHHHHHHHHHHHH
Q 027741 103 --------------------------------------------HLP----RFQPG-------NLEHNQKLFECVNEIAA 127 (219)
Q Consensus 103 --------------------------------------------~~~----~~~~~-------~~~~~~~~~~~l~~la~ 127 (219)
..| .+... ..+......+.+.++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~l~~~a~ 239 (314)
T PLN02587 160 TYVLDRVPPGTVDVILSYCHYSLNDSSLEDLLPYLKSKGVGVISASPLAMGLLTENGPPEWHPAPPELKSACAAAATHCK 239 (314)
T ss_pred HHHHHhhhcCCCCeEEeccccCcchhhHHHHHHHHHHcCceEEEechhhccccCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 000 00000 00112234566788999
Q ss_pred HhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcC----CCCCHHHHHHHHHHhcC
Q 027741 128 NKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALS----VKITPEEMAELEAIASA 185 (219)
Q Consensus 128 ~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~----~~L~~e~~~~l~~~~~~ 185 (219)
++|+|++|+||+|++++|.|++||+|+++++||++|+++++ .+|+++++++|+++.+.
T Consensus 240 ~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~~~ 301 (314)
T PLN02587 240 EKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAILAP 301 (314)
T ss_pred HhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999976 37999999999998853
No 6
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=5e-32 Score=233.53 Aligned_cols=177 Identities=28% Similarity=0.378 Sum_probs=140.7
Q ss_pred cceEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCC-------CCcHHHHHHHHhhc-
Q 027741 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYG-------PHTNEILLGKAFKG- 75 (219)
Q Consensus 4 m~~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-------~g~sE~~lG~al~~- 75 (219)
|+||+||++|++||+||||||++|. ..+.+++.++|+.|+++|||+||||+.|| .|.||.+||++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999863 34578899999999999999999999998 48999999999985
Q ss_pred CCCCCeEEEeeeccccc----------CCC----------------------cccCC---------------------CC
Q 027741 76 GFRERAELATKFGIGIV----------DGK----------------------YGYHG---------------------DP 102 (219)
Q Consensus 76 ~~R~~~~I~TK~~~~~~----------~~~----------------------~~~~~---------------------~~ 102 (219)
..|++++|+||++.... ... ..+|. .+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 46999999999853110 000 01121 01
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 027741 103 ----------------------------------------------------------------------------HLPR 106 (219)
Q Consensus 103 ----------------------------------------------------------------------------~~~~ 106 (219)
+.|.
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 0000
Q ss_pred ----CCCC---------------------ChhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHH
Q 027741 107 ----FQPG---------------------NLEHNQKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLN 161 (219)
Q Consensus 107 ----~~~~---------------------~~~~~~~~~~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~ 161 (219)
+... ......+..+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||+
T Consensus 237 ~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~ 316 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLK 316 (346)
T ss_pred cCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHH
Confidence 0000 001123346788999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhc
Q 027741 162 ENIEALSVKITPEEMAELEAIAS 184 (219)
Q Consensus 162 e~l~a~~~~L~~e~~~~l~~~~~ 184 (219)
+|+++++++|++++++.|+++.+
T Consensus 317 en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 317 TNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHhhccCCCCHHHHHHHHHHHh
Confidence 99999999999999999999875
No 7
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=227.23 Aligned_cols=170 Identities=29% Similarity=0.412 Sum_probs=138.7
Q ss_pred cceEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhc--CCCCCe
Q 027741 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERA 81 (219)
Q Consensus 4 m~~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~ 81 (219)
|.+.+| ++|.+||.||||||++++ .+.+.+.+++|++.|+|+||||.+|| ||+.+|+++++ ++|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 455677 778889999999999852 23389999999999999999999999 99999999998 889999
Q ss_pred EEEeeecccccCCC--------------------cccCCC---------C------------------------------
Q 027741 82 ELATKFGIGIVDGK--------------------YGYHGD---------P------------------------------ 102 (219)
Q Consensus 82 ~I~TK~~~~~~~~~--------------------~~~~~~---------~------------------------------ 102 (219)
||+||+++...... ..+|+. .
T Consensus 72 FittKvw~~~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSNF~~~~L~~l 151 (280)
T COG0656 72 FITTKVWPSDLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSNFGVEHLEEL 151 (280)
T ss_pred EEEeecCCccCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeCCCHHHHHHH
Confidence 99999998764221 112222 0
Q ss_pred --------------CCCCCCCCChhh------------------h-HHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeE
Q 027741 103 --------------HLPRFQPGNLEH------------------N-QKLFECVNEIAANKGCTPSQLALAWVHHQGDDVC 149 (219)
Q Consensus 103 --------------~~~~~~~~~~~~------------------~-~~~~~~l~~la~~~g~t~~q~aL~w~l~~~~v~~ 149 (219)
++|++++..+.. . ....+.+.++|++||.|++|++|+|+++++ ++
T Consensus 152 ~~~~~~~p~~NQIe~hp~~~q~el~~~~~~~gI~v~AysPL~~g~~l~~~~~l~~Ia~k~g~t~AQv~L~W~i~~g--v~ 229 (280)
T COG0656 152 LSLAKVKPAVNQIEYHPYLRQPELLPFCQRHGIAVEAYSPLAKGGKLLDNPVLAEIAKKYGKTPAQVALRWHIQRG--VI 229 (280)
T ss_pred HHhcCCCCceEEEEeccCCCcHHHHHHHHHcCCEEEEECCcccccccccChHHHHHHHHhCCCHHHHHHHHHHhCC--cE
Confidence 444444433210 0 112368899999999999999999999999 99
Q ss_pred eecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC
Q 027741 150 PIPGTTKIANLNENIEALSVKITPEEMAELEAIASAD 186 (219)
Q Consensus 150 vi~g~~~~~~l~e~l~a~~~~L~~e~~~~l~~~~~~~ 186 (219)
+||.+++++|++||++++++.||+|||+.|+++....
T Consensus 230 ~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 230 VIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred EecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999998754
No 8
>PRK10376 putative oxidoreductase; Provisional
Probab=99.98 E-value=2.7e-31 Score=223.90 Aligned_cols=182 Identities=32% Similarity=0.546 Sum_probs=138.6
Q ss_pred CCc-cc--eEEcCCCCcccCcceeccccCCC--CCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhc
Q 027741 1 MAT-VR--RMKLGSQGLEVSAQGLGCMGMSA--LYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG 75 (219)
Q Consensus 1 m~~-m~--~~~lg~tg~~vs~lglGt~~~~~--~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~ 75 (219)
|++ |. ++.| +|++||+||||||++|+ .||...+++++.++|++|+++|||+||||+.||+|.+|+++|++++.
T Consensus 1 ~~~~~~~~~~~l--~g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~ 78 (290)
T PRK10376 1 MSTIMSSGTFTL--GGRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP 78 (290)
T ss_pred CcccccCCceec--CCeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc
Confidence 555 43 3455 39999999999999975 36765577889999999999999999999999999999999999976
Q ss_pred CCCCCeEEEeeeccccc-------CCC----------------------cc------cCCC---C---------------
Q 027741 76 GFRERAELATKFGIGIV-------DGK----------------------YG------YHGD---P--------------- 102 (219)
Q Consensus 76 ~~R~~~~I~TK~~~~~~-------~~~----------------------~~------~~~~---~--------------- 102 (219)
.|++++|+||++.... ... .. +|.. +
T Consensus 79 -~R~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~G 157 (290)
T PRK10376 79 -YPDDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQG 157 (290)
T ss_pred -CCCeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCC
Confidence 6999999999864210 000 01 1111 0
Q ss_pred ------------------------------CCCCCCC-CCh-h-----------------hhHHHHHHHHHHHHHhCCCH
Q 027741 103 ------------------------------HLPRFQP-GNL-E-----------------HNQKLFECVNEIAANKGCTP 133 (219)
Q Consensus 103 ------------------------------~~~~~~~-~~~-~-----------------~~~~~~~~l~~la~~~g~t~ 133 (219)
++...+. ..+ + ......+.+.++|+++|+|+
T Consensus 158 kir~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~gi~v~a~~pL~g~~~~~~~~l~~ia~~~~~t~ 237 (290)
T PRK10376 158 LVRHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRADDALIDALARDGIAYVPFFPLGGFTPLQSSTLSDVAASLGATP 237 (290)
T ss_pred ceeEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCChHHHHHHHHHcCCEEEEeecCCCCChhhhHHHHHHHHHhCCCH
Confidence 0000000 000 0 00011467889999999999
Q ss_pred HHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 027741 134 SQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASA 185 (219)
Q Consensus 134 ~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~~~L~~e~~~~l~~~~~~ 185 (219)
+|+||+|+++++.++++|+|+++++|+++|++++++.|++++++.|+++.+.
T Consensus 238 aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 238 MQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred HHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 9999999999876788999999999999999999999999999999998653
No 9
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.97 E-value=5.6e-32 Score=226.55 Aligned_cols=193 Identities=28% Similarity=0.351 Sum_probs=151.1
Q ss_pred cceEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhcCCCCCeEE
Q 027741 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAEL 83 (219)
Q Consensus 4 m~~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I 83 (219)
|.||.+|+||.++|.||||+|++...|...+|++.+.++|++|+++|||+||||..|..|.||..+|+||++..|+++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999776777789999999999999999999999999988899999999999978999999
Q ss_pred EeeecccccCCCc---------------------ccCCCC----------------------------------------
Q 027741 84 ATKFGIGIVDGKY---------------------GYHGDP---------------------------------------- 102 (219)
Q Consensus 84 ~TK~~~~~~~~~~---------------------~~~~~~---------------------------------------- 102 (219)
+||+......... .+|...
T Consensus 81 aTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs~e~~~ 160 (391)
T COG1453 81 ATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGSTEVFK 160 (391)
T ss_pred EeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCCHHHHH
Confidence 9999854432110 011100
Q ss_pred ----CCC---------CCCCCCh---h-------------------hhHH---HHHHHHHHHHHhC--CCHHHHHHHHHH
Q 027741 103 ----HLP---------RFQPGNL---E-------------------HNQK---LFECVNEIAANKG--CTPSQLALAWVH 142 (219)
Q Consensus 103 ----~~~---------~~~~~~~---~-------------------~~~~---~~~~l~~la~~~g--~t~~q~aL~w~l 142 (219)
.++ ++...+. + .+.. ..+++.+++++++ .||+..|+||++
T Consensus 161 ~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~vP~~~~~l~~~~~~~~sP~~wa~R~~~ 240 (391)
T COG1453 161 EIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNVPEKLEELCRPASPKRSPAEWALRYLL 240 (391)
T ss_pred HHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCCCHHHHHHHHhcCCCCCcHHHHHHHHh
Confidence 000 0000000 0 0001 2378888998876 579999999999
Q ss_pred hCCCCeEeecCCCCHHHHHHHHHhcCC--C-CCHHHHHHHHHHhcC------CCCCCCCCCCC
Q 027741 143 HQGDDVCPIPGTTKIANLNENIEALSV--K-ITPEEMAELEAIASA------DNVKGDRYPSS 196 (219)
Q Consensus 143 ~~~~v~~vi~g~~~~~~l~e~l~a~~~--~-L~~e~~~~l~~~~~~------~~~~~~~~~~~ 196 (219)
+||.|+++++|+++++||+||++.++. + ||++|.+.|.++.+. .+|.+|+||=+
T Consensus 241 shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v~~~~~~~~~v~Ct~C~yC~P 303 (391)
T COG1453 241 SHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKVEEIYRESLKVPCTGCRYCLP 303 (391)
T ss_pred cCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHhcCCCccccccCc
Confidence 999999999999999999999999874 3 999998887776543 36778887644
No 10
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=99.97 E-value=1.9e-30 Score=217.75 Aligned_cols=173 Identities=36% Similarity=0.526 Sum_probs=137.5
Q ss_pred eEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhcCC-CCCeEEE
Q 027741 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGF-RERAELA 84 (219)
Q Consensus 6 ~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~-R~~~~I~ 84 (219)
+|+||++|++||+||||||+++..| .+.+++.+++++|++.|||+||||+.||.|.||+.+|++|++.. |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987544 35789999999999999999999999999999999999999854 9999999
Q ss_pred eeecccccC----CC---------------------cccCCCC-------------------------------------
Q 027741 85 TKFGIGIVD----GK---------------------YGYHGDP------------------------------------- 102 (219)
Q Consensus 85 TK~~~~~~~----~~---------------------~~~~~~~------------------------------------- 102 (219)
||++..... .. ..+|...
T Consensus 78 tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~ 157 (285)
T cd06660 78 TKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAEQLEE 157 (285)
T ss_pred eeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHHHHHH
Confidence 999876321 00 0011100
Q ss_pred ---------------CCCCCCCCC--h-h------------------------------hhHHHHHHHHHHHHHhCCCHH
Q 027741 103 ---------------HLPRFQPGN--L-E------------------------------HNQKLFECVNEIAANKGCTPS 134 (219)
Q Consensus 103 ---------------~~~~~~~~~--~-~------------------------------~~~~~~~~l~~la~~~g~t~~ 134 (219)
.++...... + + ........+..++++++++++
T Consensus 158 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 237 (285)
T cd06660 158 ALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPPEGDLLEALKEIAEKHGVTPA 237 (285)
T ss_pred HHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCChhhHHHHHHHHHHHhCCCHH
Confidence 001110000 0 0 000123567899999999999
Q ss_pred HHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcCCCCCHHHHHHHHH
Q 027741 135 QLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEA 181 (219)
Q Consensus 135 q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~~~L~~e~~~~l~~ 181 (219)
|+||+|++++|.+.+||+|+++++||++|++++.++|++++++.|++
T Consensus 238 q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 238 QVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred HHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999986
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=99.97 E-value=4.4e-30 Score=212.40 Aligned_cols=167 Identities=28% Similarity=0.418 Sum_probs=137.1
Q ss_pred eEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhc------CCCC
Q 027741 6 RMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG------GFRE 79 (219)
Q Consensus 6 ~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~------~~R~ 79 (219)
+..| ++|.+||.||||||+. +..++.++++.|++.|+||||||..|+ +|+.+|++|++ ++|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 5777 9999999999999984 357899999999999999999999999 99999999995 6899
Q ss_pred CeEEEeeecccccCCC--------------------cccCC--------------------CC-----------------
Q 027741 80 RAELATKFGIGIVDGK--------------------YGYHG--------------------DP----------------- 102 (219)
Q Consensus 80 ~~~I~TK~~~~~~~~~--------------------~~~~~--------------------~~----------------- 102 (219)
++||+||+++...... +.+|+ ..
T Consensus 74 diFiTSKlw~~~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~amE~~~~~Gl~ 153 (300)
T KOG1577|consen 74 DIFITSKLWPTDHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAMEKLVDEGLV 153 (300)
T ss_pred hheeeeccCccccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHHHHHHHcCCc
Confidence 9999999998542110 00000 00
Q ss_pred ------------------------------CCCCCCCCChhh----------------------hHHHHHHHHHHHHHhC
Q 027741 103 ------------------------------HLPRFQPGNLEH----------------------NQKLFECVNEIAANKG 130 (219)
Q Consensus 103 ------------------------------~~~~~~~~~~~~----------------------~~~~~~~l~~la~~~g 130 (219)
+||+|++..+.. .....+.+.+||++|+
T Consensus 154 rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~~L~~fCk~~~I~v~AYSpLg~~~~~~~ll~~~~l~~iA~K~~ 233 (300)
T KOG1577|consen 154 RSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQKKLVEFCKSKGIVVTAYSPLGSPGRGSDLLEDPVLKEIAKKYN 233 (300)
T ss_pred eEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcChHHHHHHHhhCCcEEEEecCCCCCCCccccccCHHHHHHHHHhC
Confidence 455555443210 1223578999999999
Q ss_pred CCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC
Q 027741 131 CTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASAD 186 (219)
Q Consensus 131 ~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~~~L~~e~~~~l~~~~~~~ 186 (219)
+|++|++|||+++++ ++|||.++|++||+||++++++.|++||++.|+.+....
T Consensus 234 kt~aQIlLrw~~q~g--~~vipKS~~~~Ri~eN~~vfdf~Lt~ed~~~i~~~~~~~ 287 (300)
T KOG1577|consen 234 KTPAQILLRWALQRG--VSVIPKSSNPERIKENFKVFDFELTEEDMKKLDSLNSNE 287 (300)
T ss_pred CCHHHHHHHHHHhCC--cEEEeccCCHHHHHHHHhhccccCCHHHHHHHhhccccc
Confidence 999999999999999 999999999999999999999999999999999876543
No 12
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.97 E-value=1e-29 Score=204.55 Aligned_cols=171 Identities=25% Similarity=0.321 Sum_probs=139.6
Q ss_pred CCccceEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhcCCCCC
Q 027741 1 MATVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRER 80 (219)
Q Consensus 1 m~~m~~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~ 80 (219)
|+.|+||.+|+||++||+||||+..++..||+ .++++....+..|+.+|||+||||+.||+++||..+|.++++.||+.
T Consensus 19 vrrmeyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~a 97 (342)
T KOG1576|consen 19 VRRMEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREA 97 (342)
T ss_pred HHHHHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhh
Confidence 44599999999999999999999999998987 45677777777799999999999999999999999999999999999
Q ss_pred eEEEeeecccccCCCcccCCCC----------------------------------------------------------
Q 027741 81 AELATKFGIGIVDGKYGYHGDP---------------------------------------------------------- 102 (219)
Q Consensus 81 ~~I~TK~~~~~~~~~~~~~~~~---------------------------------------------------------- 102 (219)
+||+||++....+....++.+.
T Consensus 98 YyIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGi 177 (342)
T KOG1576|consen 98 YYIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGI 177 (342)
T ss_pred eeeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeee
Confidence 9999999986544321111110
Q ss_pred ---------------------------------------------------------------CCCCCCCCChhhhHHHH
Q 027741 103 ---------------------------------------------------------------HLPRFQPGNLEHNQKLF 119 (219)
Q Consensus 103 ---------------------------------------------------------------~~~~~~~~~~~~~~~~~ 119 (219)
+.+.|.+ .-++..+..
T Consensus 178 tgypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tLl~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~wHP-aS~Elk~~a 256 (342)
T KOG1576|consen 178 TGYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTLLRYLKRLKSKGVGVINASALSMGLLTNQGPPPWHP-ASDELKEAA 256 (342)
T ss_pred cccchHHHHHHHhcCCCceeeehhhhhhccccHHHHHHHHHHHhcCceEEehhhHHHHHhhcCCCCCCCC-CCHHHHHHH
Confidence 1111211 112334455
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcCCCCCH
Q 027741 120 ECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITP 173 (219)
Q Consensus 120 ~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~~~L~~ 173 (219)
.+-.++|++.|+.++.+|+.|.++.+++.++++|+++.++|+.|+++-...||.
T Consensus 257 ~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 257 KAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 677788999999999999999999999999999999999999999987667776
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=99.96 E-value=8.2e-29 Score=207.25 Aligned_cols=171 Identities=27% Similarity=0.390 Sum_probs=131.7
Q ss_pred CCccceEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhc--CCC
Q 027741 1 MATVRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFR 78 (219)
Q Consensus 1 m~~m~~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R 78 (219)
|....+..| ++|++||+||||||+++ .+++.++|++|++.|||+||||+.|| +|+.+|++|++ .+|
T Consensus 1 ~~~~~~~~l-~~g~~v~~lglG~~~~~--------~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R 68 (275)
T PRK11565 1 MANPTVIKL-QDGNVMPQLGLGVWQAS--------NEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAR 68 (275)
T ss_pred CCCCceEEc-CCCCccCCcceECccCC--------HHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCH
Confidence 555566777 89999999999999862 57899999999999999999999998 79999999986 468
Q ss_pred CCeEEEeeecccccCCC------------------cccCCC-----C---------------------------------
Q 027741 79 ERAELATKFGIGIVDGK------------------YGYHGD-----P--------------------------------- 102 (219)
Q Consensus 79 ~~~~I~TK~~~~~~~~~------------------~~~~~~-----~--------------------------------- 102 (219)
++++|+||++....... ..+|.. .
T Consensus 69 ~~~~i~tK~~~~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~~~l~~~ 148 (275)
T PRK11565 69 EELFITTKLWNDDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRL 148 (275)
T ss_pred HHEEEEEEecCcchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCHHHHHHH
Confidence 99999999864321100 011110 0
Q ss_pred --------------CCCCCCCCCh-----hh------------h---HHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCe
Q 027741 103 --------------HLPRFQPGNL-----EH------------N---QKLFECVNEIAANKGCTPSQLALAWVHHQGDDV 148 (219)
Q Consensus 103 --------------~~~~~~~~~~-----~~------------~---~~~~~~l~~la~~~g~t~~q~aL~w~l~~~~v~ 148 (219)
.++.+....+ .. + ....+.|.++|+++|+|++|+||+|+++++ .
T Consensus 149 ~~~~~v~~~~~Q~~~~~~~~~~~~~~~~~~~~i~~~a~spl~~G~~~~~~~~~l~~ia~~~g~s~aq~aL~w~l~~~--~ 226 (275)
T PRK11565 149 IDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVIRWHLDSG--L 226 (275)
T ss_pred HHhCCCCceeeeeecCCccchHHHHHHHHHCCCEEEEEccCCCCCcccccCHHHHHHHHHhCCCHHHHHHHHHHcCC--C
Confidence 0111110000 00 0 001367899999999999999999999998 6
Q ss_pred EeecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 027741 149 CPIPGTTKIANLNENIEALSVKITPEEMAELEAIASA 185 (219)
Q Consensus 149 ~vi~g~~~~~~l~e~l~a~~~~L~~e~~~~l~~~~~~ 185 (219)
++|+|+++++|+++|+++++++|+++++++|+++...
T Consensus 227 ~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~ 263 (275)
T PRK11565 227 VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQG 263 (275)
T ss_pred EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhccc
Confidence 7999999999999999999999999999999999754
No 14
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.96 E-value=6.7e-29 Score=208.14 Aligned_cols=163 Identities=31% Similarity=0.431 Sum_probs=123.7
Q ss_pred cceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhc--CCCCCeEEEeeecccc----
Q 027741 18 AQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAELATKFGIGI---- 91 (219)
Q Consensus 18 ~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~I~TK~~~~~---- 91 (219)
+||||||+++.. ..+.+++.++|+.|++.|||+||||+.||+|.||+.+|++|++ .+|++++|+||+....
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~~~~~ 77 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDGKPEP 77 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSSSTGG
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccccccc
Confidence 589999999643 5678999999999999999999999999999999999999998 8999999999991111
Q ss_pred -cCCC--------------------cccCCCC------------------------------------------------
Q 027741 92 -VDGK--------------------YGYHGDP------------------------------------------------ 102 (219)
Q Consensus 92 -~~~~--------------------~~~~~~~------------------------------------------------ 102 (219)
.... ..+|...
T Consensus 78 ~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~~~~~ 157 (283)
T PF00248_consen 78 DYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSIPPDV 157 (283)
T ss_dssp GSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS-ESE
T ss_pred cccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccccc
Confidence 1000 0011110
Q ss_pred ----CCC------------------------CCCCCCh----------------hhhHHHHHHHHHHHHHhCCCHHHHHH
Q 027741 103 ----HLP------------------------RFQPGNL----------------EHNQKLFECVNEIAANKGCTPSQLAL 138 (219)
Q Consensus 103 ----~~~------------------------~~~~~~~----------------~~~~~~~~~l~~la~~~g~t~~q~aL 138 (219)
++. .+.+..+ .......+.+.++++++|+|++|+||
T Consensus 158 ~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~s~~q~al 237 (283)
T PF00248_consen 158 VQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASLRDAQELADALRELAEEHGVSPAQLAL 237 (283)
T ss_dssp EEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGSSTHGGGHHHHHHHHHHHTSSHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccCccccccccCCCcccccccchhhhhhhhhhhhhhhcccccchhhh
Confidence 000 0000000 00124567899999999999999999
Q ss_pred HHHHhCCCCeEeecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 027741 139 AWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIA 183 (219)
Q Consensus 139 ~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~~~L~~e~~~~l~~~~ 183 (219)
+|+++++.+.+||+|+++++||++|+++++++|+++++++|+++.
T Consensus 238 ~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 238 RWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999875
No 15
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=99.96 E-value=4.4e-28 Score=202.09 Aligned_cols=159 Identities=28% Similarity=0.385 Sum_probs=122.2
Q ss_pred cccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhc--CCCCCeEEEeeecccc
Q 027741 14 LEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERAELATKFGIGI 91 (219)
Q Consensus 14 ~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~I~TK~~~~~ 91 (219)
++||+||||||+++ .+++.+++++|++.|||+||||+.|| +|+.||++|++ .+|+++||+||++...
T Consensus 1 ~~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~~ 69 (267)
T PRK11172 1 MSIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWIDN 69 (267)
T ss_pred CCCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCCC
Confidence 36999999999874 36799999999999999999999999 79999999985 4799999999986431
Q ss_pred cCCC--------------------cccCCC------C-------------------------------------------
Q 027741 92 VDGK--------------------YGYHGD------P------------------------------------------- 102 (219)
Q Consensus 92 ~~~~--------------------~~~~~~------~------------------------------------------- 102 (219)
.... ..+|.. +
T Consensus 70 ~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~~ 149 (267)
T PRK11172 70 LAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIAAVGAENIA 149 (267)
T ss_pred CCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHHhcCCCCCe
Confidence 1100 111211 1
Q ss_pred -----CCCCCCCCChh-----------------hh-HHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHH
Q 027741 103 -----HLPRFQPGNLE-----------------HN-QKLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIAN 159 (219)
Q Consensus 103 -----~~~~~~~~~~~-----------------~~-~~~~~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~ 159 (219)
+++..+...+- .+ +...+.+.++|+++|+|++|+||+|+++++ .+||+|+++++|
T Consensus 150 ~~Q~~~~~~~~~~~ll~~~~~~gi~v~a~spl~~G~~~~~~~l~~~a~~~~~s~aqval~w~l~~~--~~~i~g~~~~~~ 227 (267)
T PRK11172 150 TNQIELSPYLQNRKVVAFAKEHGIHVTSYMTLAYGKVLKDPVIARIAAKHNATPAQVILAWAMQLG--YSVIPSSTKREN 227 (267)
T ss_pred EEeeecCCCCCcHHHHHHHHHCCCEEEEECCCCCCcccCCHHHHHHHHHhCCCHHHHHHHHHHhCC--CEeecCCCCHHH
Confidence 01111100000 00 001256889999999999999999999998 679999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHhcC
Q 027741 160 LNENIEALSVKITPEEMAELEAIASA 185 (219)
Q Consensus 160 l~e~l~a~~~~L~~e~~~~l~~~~~~ 185 (219)
|++|+++++++|+++++++|+++.++
T Consensus 228 l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 228 LASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred HHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 99999999999999999999999764
No 16
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.95 E-value=1.9e-27 Score=190.12 Aligned_cols=177 Identities=29% Similarity=0.461 Sum_probs=147.0
Q ss_pred cceEEcCCCCcccCcceeccccCCCCCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhc--CCCCCe
Q 027741 4 VRRMKLGSQGLEVSAQGLGCMGMSALYGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKG--GFRERA 81 (219)
Q Consensus 4 m~~~~lg~tg~~vs~lglGt~~~~~~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~ 81 (219)
|.+..|++.|+++|++.+|+|++.. |+ ...+++..+|+.|++.||++||.|+.||++..|.++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7889999999999999999999953 54 345789999999999999999999999999999999999987 679999
Q ss_pred EEEeeecccccCCCccc---------------------------------CCCC--------------------------
Q 027741 82 ELATKFGIGIVDGKYGY---------------------------------HGDP-------------------------- 102 (219)
Q Consensus 82 ~I~TK~~~~~~~~~~~~---------------------------------~~~~-------------------------- 102 (219)
.|+||+|.......... +.++
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 99999998764221000 0011
Q ss_pred -------------------------------------------------------CCCCCCCCChhhhHHHHHHHHHHHH
Q 027741 103 -------------------------------------------------------HLPRFQPGNLEHNQKLFECVNEIAA 127 (219)
Q Consensus 103 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~l~~la~ 127 (219)
+...|.+ .+...++.+.|..+|+
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g--~~~~q~l~~~l~~ia~ 235 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLG--DDKFQRLRKVLDRIAE 235 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccC--CcchHHHHHHHHHHHH
Confidence 1111221 1233456789999999
Q ss_pred HhC-CCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Q 027741 128 NKG-CTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELEAIASA 185 (219)
Q Consensus 128 ~~g-~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~~~L~~e~~~~l~~~~~~ 185 (219)
++| +|..+|+++|++++|.-..||+|+.|+++|++.++|++..|+.++|-+|-.+...
T Consensus 236 e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 236 EYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred HhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 999 7999999999999999999999999999999999999999999999999887653
No 17
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.93 E-value=6.3e-26 Score=191.25 Aligned_cols=165 Identities=21% Similarity=0.215 Sum_probs=122.2
Q ss_pred CcccCcceeccccCCCC-------CCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhcCCCCCeEEEe
Q 027741 13 GLEVSAQGLGCMGMSAL-------YGPPKPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELAT 85 (219)
Q Consensus 13 g~~vs~lglGt~~~~~~-------~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~T 85 (219)
+++||+||||||++|+. || ..+++++.++|+.|+++|||+||||+.|| .||+++|++|++..+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~-~~~~~ea~~~l~~A~~~Gin~~DTA~~YG--~SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRG-RTPEAEARDILNIAARAGLSVLDASGLFG--RAETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCC-CCCHHHHHHHHHHHHHcCCCEEecchhhh--hHHHHHhhhhccCCceEeeccc
Confidence 57899999999999854 34 45788999999999999999999999997 7999999999863346789999
Q ss_pred eecccccCCC------------------cccCCC-----C----------------------------------------
Q 027741 86 KFGIGIVDGK------------------YGYHGD-----P---------------------------------------- 102 (219)
Q Consensus 86 K~~~~~~~~~------------------~~~~~~-----~---------------------------------------- 102 (219)
|......... ..+|.. +
T Consensus 79 k~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~ 158 (292)
T PRK14863 79 VRADRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASDDPVGVARRFKP 158 (292)
T ss_pred ccccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHHHHHHHHhcCCC
Confidence 8532110000 011110 0
Q ss_pred ------CCCCCCCC----C--------------------------------hhhhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 027741 103 ------HLPRFQPG----N--------------------------------LEHNQKLFECVNEIAANKGCTPSQLALAW 140 (219)
Q Consensus 103 ------~~~~~~~~----~--------------------------------~~~~~~~~~~l~~la~~~g~t~~q~aL~w 140 (219)
+++..+.. . +......+..+.+++++++++++|+||+|
T Consensus 159 ~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~aqlalaw 238 (292)
T PRK14863 159 DILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPDRVPAQLKGASGRLSRVRRMIAEGRSDPLQAALGF 238 (292)
T ss_pred CEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcccCccchhhhhHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 01111100 0 00011234566778888899999999999
Q ss_pred HHhCCCCeEeecCCCCHHHHHHHHHhcCCCCCHHHHHHHH
Q 027741 141 VHHQGDDVCPIPGTTKIANLNENIEALSVKITPEEMAELE 180 (219)
Q Consensus 141 ~l~~~~v~~vi~g~~~~~~l~e~l~a~~~~L~~e~~~~l~ 180 (219)
++++|.|+++|+|+++++||++|+++.+.+++++.+++|.
T Consensus 239 ~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~ 278 (292)
T PRK14863 239 ALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMA 278 (292)
T ss_pred HHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhcc
Confidence 9999999999999999999999999999999998877764
No 18
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=65.48 E-value=9.8 Score=24.25 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 027741 121 CVNEIAANKGCTPSQLALAWVHH 143 (219)
Q Consensus 121 ~l~~la~~~g~t~~q~aL~w~l~ 143 (219)
.+.+||+++|+++.+++..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 45689999999999999999853
No 19
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=52.87 E-value=34 Score=28.90 Aligned_cols=67 Identities=21% Similarity=0.125 Sum_probs=50.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcC--------C--CCCHHHHHHHHHHhcCC
Q 027741 120 ECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALS--------V--KITPEEMAELEAIASAD 186 (219)
Q Consensus 120 ~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~--------~--~L~~e~~~~l~~~~~~~ 186 (219)
+...++++++++...---+.=+|+.+.+.+|++.+.+..|.+-.+++++ + .+|-+|.++|-++.++.
T Consensus 41 ~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 41 ERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred HHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 3567899999987222235667888888999999999999888888874 3 45778888888887764
No 20
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=44.91 E-value=38 Score=20.13 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=29.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcCC
Q 027741 122 VNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALSV 169 (219)
Q Consensus 122 l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~~ 169 (219)
|++||+..|+|.+-| ..+|+.+ .-+...+.+++.+.++.++.
T Consensus 2 i~dIA~~agvS~~TV--Sr~ln~~----~~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTV--SRVLNGP----PRVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHH--HHHHTTC----SSSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHH--HHHHhCC----CCCCHHHHHHHHHHHHHHCC
Confidence 678999999999765 4556655 35566677777777766554
No 21
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=44.42 E-value=24 Score=31.17 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCCeeeCcCCCC
Q 027741 37 PDMIALIRHAINSGITFLDTSDIYG 61 (219)
Q Consensus 37 ~~~~~~l~~Al~~Gi~~~DTA~~Yg 61 (219)
-....++++|++.|++++|||.+.-
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~ 103 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEE 103 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCc
Confidence 3456899999999999999998775
No 22
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=42.97 E-value=60 Score=26.81 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=45.2
Q ss_pred CCCcccCcceeccccCCCCCCCCCC--hHHHHH----HHHHHHHcCCCeeeCcC--CCCCCcHHHHHHHHhhc-------
Q 027741 11 SQGLEVSAQGLGCMGMSALYGPPKP--EPDMIA----LIRHAINSGITFLDTSD--IYGPHTNEILLGKAFKG------- 75 (219)
Q Consensus 11 ~tg~~vs~lglGt~~~~~~~g~~~~--~~~~~~----~l~~Al~~Gi~~~DTA~--~Yg~g~sE~~lG~al~~------- 75 (219)
.+|+.+|.++|.+.+=. .+|+.++ .+++.+ .+..|.+.||+.|--|- +|=.-.+|....+++..
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 57899999999987632 2554322 334444 45556678999998874 44322344444555443
Q ss_pred CCCCCeEEEeee
Q 027741 76 GFRERAELATKF 87 (219)
Q Consensus 76 ~~R~~~~I~TK~ 87 (219)
..+-++.++-.+
T Consensus 144 A~~aqV~lAvEi 155 (287)
T COG3623 144 AARAQVMLAVEI 155 (287)
T ss_pred HHhhccEEEeee
Confidence 234556655544
No 23
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.26 E-value=38 Score=24.03 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhcCCCCCeEEEeeecccc
Q 027741 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGI 91 (219)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~TK~~~~~ 91 (219)
|....+...--.+++|--|+-|-+.|.-|+ |-++---|-+ ..+++++++|+.+..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG~-evfl~l~lld-~pekl~vagkVaWit 72 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIGE-EVFLLLELLD-FPEKLPVAGKVAWIT 72 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccch-hhhhhhhhcC-chhhccccceEEEEc
Confidence 344566777777899999999999997554 5555444444 446899999997654
No 24
>PF14502 HTH_41: Helix-turn-helix domain
Probab=39.81 E-value=33 Score=20.74 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCC--HHHHHHHHHHhCCCCe
Q 027741 119 FECVNEIAANKGCT--PSQLALAWVHHQGDDV 148 (219)
Q Consensus 119 ~~~l~~la~~~g~t--~~q~aL~w~l~~~~v~ 148 (219)
++.+.+++++++++ ..|-||+++-..+.|.
T Consensus 6 i~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 6 IPTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred cCCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 45678899999987 5899999999888543
No 25
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=38.99 E-value=69 Score=17.65 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHH
Q 027741 117 KLFECVNEIAANKGCTPSQLALA 139 (219)
Q Consensus 117 ~~~~~l~~la~~~g~t~~q~aL~ 139 (219)
+..+.|.++|++.|.|.+++.-.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~ir~ 31 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELIRE 31 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHH
Confidence 35788999999999999886443
No 26
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=38.76 E-value=84 Score=19.94 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=15.0
Q ss_pred HHHHHHHHhCCCHHHHH
Q 027741 121 CVNEIAANKGCTPSQLA 137 (219)
Q Consensus 121 ~l~~la~~~g~t~~q~a 137 (219)
.+.+||+++|++..+|-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999998875
No 27
>PF13518 HTH_28: Helix-turn-helix domain
Probab=38.07 E-value=44 Score=19.58 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Q 027741 121 CVNEIAANKGCTPSQLALAWVHH 143 (219)
Q Consensus 121 ~l~~la~~~g~t~~q~aL~w~l~ 143 (219)
.+.++|+++|++..+| .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4567899999988775 777753
No 28
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=36.72 E-value=2.1e+02 Score=28.65 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=50.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHHhCCC--HHHHHHHHHHhCCCCe--EeecCCCCHHHH----HHHHHhcCCCCCHHHHHH
Q 027741 107 FQPGNLEHNQKLFECVNEIAANKGCT--PSQLALAWVHHQGDDV--CPIPGTTKIANL----NENIEALSVKITPEEMAE 178 (219)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~la~~~g~t--~~q~aL~w~l~~~~v~--~vi~g~~~~~~l----~e~l~a~~~~L~~e~~~~ 178 (219)
..+......+...+.+..+-++.... ...+.-+|.+.+|.-+ +++|...-.+++ ++.+......|++|+.+.
T Consensus 408 ~~G~dp~~~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~~~~~~~ekee~e~L~~~~~~l~de~~~k 487 (978)
T COG1026 408 LNGGDPEDSLRFLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSPELEEKLEKEERELLQKRSSELTDEDLEK 487 (978)
T ss_pred ccCCChhhhhhhHHHHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecChHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 33444455555666666666655555 6788889999998433 334444434444 445666677999999998
Q ss_pred HHHHhcC
Q 027741 179 LEAIASA 185 (219)
Q Consensus 179 l~~~~~~ 185 (219)
|.+-.++
T Consensus 488 i~~~~~~ 494 (978)
T COG1026 488 IIKDSKK 494 (978)
T ss_pred HHHHHHH
Confidence 8876543
No 29
>PRK05406 LamB/YcsF family protein; Provisional
Probab=34.75 E-value=2.6e+02 Score=23.11 Aligned_cols=116 Identities=14% Similarity=0.183 Sum_probs=57.2
Q ss_pred eeccccCCCCCCCCCChHHHHHHHHHHH-HcCCCeeeCcCCCCCCcHHHHHHHHhhcCCCCCeEEEeeecccccCCCccc
Q 027741 20 GLGCMGMSALYGPPKPEPDMIALIRHAI-NSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIGIVDGKYGY 98 (219)
Q Consensus 20 glGt~~~~~~~g~~~~~~~~~~~l~~Al-~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~TK~~~~~~~~~~~~ 98 (219)
+||.|.+| ++++...+|..|- ..|+ +.| ....+-+.++--....+-|-.--++....+ +
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~g---F 72 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEG---F 72 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCC---C
Confidence 67888886 3577888887773 4565 555 344445554431222344433322222111 0
Q ss_pred CCCCCCCCCCCCChh-hhHHHHHHHHHHHHHhCCC-------------------HHHHHHHHHHhCCCCeEeecCCCCHH
Q 027741 99 HGDPHLPRFQPGNLE-HNQKLFECVNEIAANKGCT-------------------PSQLALAWVHHQGDDVCPIPGTTKIA 158 (219)
Q Consensus 99 ~~~~~~~~~~~~~~~-~~~~~~~~l~~la~~~g~t-------------------~~q~aL~w~l~~~~v~~vi~g~~~~~ 158 (219)
+.. .-.++...+. ...-.+..|..+|+..|.. .++..++.+..... ..++.+...-.
T Consensus 73 -GRR-~m~~s~~el~~~v~yQigAL~~~a~~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~-~l~l~~~~~s~ 149 (246)
T PRK05406 73 -GRR-NMDLSPEELYALVLYQIGALQAIARAAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDP-SLILVGLAGSE 149 (246)
T ss_pred -CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCC-CcEEEecCChH
Confidence 000 0011111111 1223467888889887753 36666676665442 35555544433
No 30
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=34.38 E-value=72 Score=27.12 Aligned_cols=111 Identities=22% Similarity=0.163 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHcC---CCeeeCcCCCCC-CcHHHHHHHHhh----cCCCCC-eEEEeeecccccCCCcccCC-CC----
Q 027741 37 PDMIALIRHAINSG---ITFLDTSDIYGP-HTNEILLGKAFK----GGFRER-AELATKFGIGIVDGKYGYHG-DP---- 102 (219)
Q Consensus 37 ~~~~~~l~~Al~~G---i~~~DTA~~Yg~-g~sE~~lG~al~----~~~R~~-~~I~TK~~~~~~~~~~~~~~-~~---- 102 (219)
..+.++++.|-+.| |+||||+-.|-+ +.-|+--++++. +..+-+ ..|++=+|-.-..+...+-. +.
T Consensus 137 RKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad~V~ml 216 (317)
T COG0825 137 RKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVADRVLML 216 (317)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHHHHHHH
Confidence 46788888898888 679999999943 333333444443 322223 36677666432222111000 00
Q ss_pred ---CCCCCCCCChhhhH-HHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeec
Q 027741 103 ---HLPRFQPGNLEHNQ-KLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIP 152 (219)
Q Consensus 103 ---~~~~~~~~~~~~~~-~~~~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~ 152 (219)
.....+++.....+ +-...-.+.|+..++|... ++..+-|..+|+
T Consensus 217 e~s~ySVisPEG~AsILWkD~~ka~eAAe~mkita~d-----Lk~lgiID~II~ 265 (317)
T COG0825 217 ENSTYSVISPEGCASILWKDASKAKEAAEAMKITAHD-----LKELGIIDGIIP 265 (317)
T ss_pred HhceeeecChhhhhhhhhcChhhhHHHHHHcCCCHHH-----HHhCCCcceecc
Confidence 11222333221111 1123445667777777766 356777777777
No 31
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=33.69 E-value=60 Score=23.14 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCCC
Q 027741 35 PEPDMIALIRHAINSGITFLDTSDIYG 61 (219)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg 61 (219)
+.+...+....+++.|+..||.+..|-
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 456788999999999999999998884
No 32
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=33.06 E-value=1.2e+02 Score=20.49 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHhCCCHHHHHHHH
Q 027741 114 HNQKLFECVNEIAANKGCTPSQLALAW 140 (219)
Q Consensus 114 ~~~~~~~~l~~la~~~g~t~~q~aL~w 140 (219)
...+.+.+|.++|++.|++..++|.-.
T Consensus 49 ~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 49 KVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 344568899999999999999987643
No 33
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=32.58 E-value=52 Score=19.48 Aligned_cols=23 Identities=22% Similarity=-0.100 Sum_probs=14.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Q 027741 119 FECVNEIAANKGCTPSQLALAWV 141 (219)
Q Consensus 119 ~~~l~~la~~~g~t~~q~aL~w~ 141 (219)
.+.++.+.++.|+|..++|-..-
T Consensus 4 ~~~l~~~r~~~gltq~~lA~~~g 26 (58)
T TIGR03070 4 GMLVRARRKALGLTQADLADLAG 26 (58)
T ss_pred HHHHHHHHHHcCCCHHHHHHHhC
Confidence 34566666777777777765443
No 34
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=32.45 E-value=36 Score=25.28 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=12.6
Q ss_pred HHHHHHHHHcCCCeeeCc
Q 027741 40 IALIRHAINSGITFLDTS 57 (219)
Q Consensus 40 ~~~l~~Al~~Gi~~~DTA 57 (219)
...+...|+.|||+||-=
T Consensus 29 ~~~i~~QL~~GiR~lDlr 46 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDLR 46 (146)
T ss_dssp SHHHHHHHHTT--EEEEE
T ss_pred hHhHHHHHhccCceEEEE
Confidence 346788999999999943
No 35
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=31.13 E-value=29 Score=24.20 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcC-------CCCCHHHHHHHHHHhc
Q 027741 118 LFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALS-------VKITPEEMAELEAIAS 184 (219)
Q Consensus 118 ~~~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~-------~~L~~e~~~~l~~~~~ 184 (219)
..+++.++|+..|+.+..... ..+.+|. ....+|.-+.+.|++.+...+ -+||+.+...|++.+.
T Consensus 9 ~l~El~~L~~t~g~~vv~~~~-q~~~~~~-p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 9 SLEELEELAETAGYEVVGTVV-QKRRKPD-PKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHCCCeEEEEEE-ecCCCCC-cceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 467888999988876543211 1223332 567899999999999887654 4899999999999884
No 36
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.88 E-value=2.8e+02 Score=22.24 Aligned_cols=54 Identities=11% Similarity=0.011 Sum_probs=34.8
Q ss_pred CChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhcCCCCCeEEEeeecc
Q 027741 34 KPEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGI 89 (219)
Q Consensus 34 ~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~TK~~~ 89 (219)
.+.+++.++.+..++.||+.|.-.-... ...+.+...-++.++--+-.-|+...
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~--~~~~~I~~l~~~~p~~~IGAGTVl~~ 77 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTP--AALEAIRLIAKEVPEALIGAGTVLNP 77 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCc--cHHHHHHHHHHHCCCCEEEEeeccCH
Confidence 3678999999999999999999663322 45566654443344322334555543
No 37
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=30.19 E-value=1.6e+02 Score=25.62 Aligned_cols=66 Identities=14% Similarity=0.128 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCC-----CHHHHHHHHHhc-----CCCCCHHHHHHHHHHhcCC
Q 027741 120 ECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTT-----KIANLNENIEAL-----SVKITPEEMAELEAIASAD 186 (219)
Q Consensus 120 ~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~-----~~~~l~e~l~a~-----~~~L~~e~~~~l~~~~~~~ 186 (219)
++.+++|+++|+... -.+.=++..+.+++|.+.+. ..+...+.+++- +.||..+|.++|-++.++.
T Consensus 39 erA~~~A~~~gi~~y-~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~ 114 (343)
T TIGR01761 39 ERSRALAHRLGVPLY-CEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQ 114 (343)
T ss_pred HHHHHHHHHhCCCcc-CCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHc
Confidence 345678888886421 12222235566666666442 234444444432 4599988888888877664
No 38
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=29.46 E-value=57 Score=26.71 Aligned_cols=49 Identities=6% Similarity=0.092 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHH---HhCCCCeEeecCCCCHHHHHHHH
Q 027741 115 NQKLFECVNEIAANKGCTPSQLALAWV---HHQGDDVCPIPGTTKIANLNENI 164 (219)
Q Consensus 115 ~~~~~~~l~~la~~~g~t~~q~aL~w~---l~~~~v~~vi~g~~~~~~l~e~l 164 (219)
..+++.++..||.-|++++.+++..|. +++.. ...-+...+.+.+++.+
T Consensus 8 ~~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~-~~~~l~~~~L~~F~~~l 59 (253)
T PF08418_consen 8 DPDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQL-DDTKLTLDNLDQFKQYL 59 (253)
T ss_dssp -HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT--SC----TTTTTGGGTTT
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCC-CcCcCCHHHHHHHHHHH
Confidence 345789999999999999999999874 45442 22235555555555443
No 39
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=29.29 E-value=47 Score=24.54 Aligned_cols=18 Identities=11% Similarity=0.228 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCCeeeCc
Q 027741 40 IALIRHAINSGITFLDTS 57 (219)
Q Consensus 40 ~~~l~~Al~~Gi~~~DTA 57 (219)
...+..+++.|+|+||-=
T Consensus 31 ~~~i~~qL~~GvR~~dir 48 (135)
T smart00148 31 VEGYIQALDHGCRCVELD 48 (135)
T ss_pred HHHHHHHHHhCCCEEEEE
Confidence 557888999999999954
No 40
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=29.25 E-value=48 Score=23.17 Aligned_cols=64 Identities=22% Similarity=0.123 Sum_probs=43.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHHhcC--------CCC--CHHHHHHHHHHhcCC
Q 027741 122 VNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIEALS--------VKI--TPEEMAELEAIASAD 186 (219)
Q Consensus 122 l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~a~~--------~~L--~~e~~~~l~~~~~~~ 186 (219)
...+++++++.... .+.=+++++.+..+++.+.+..|.+-...+++ .|+ +.++.++|.++.+..
T Consensus 39 ~~~~~~~~~~~~~~-~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 39 AEAFAEKYGIPVYT-DLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp HHHHHHHTTSEEES-SHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchh-HHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 34557777765211 23445565567888888888888887777663 444 888998888887653
No 41
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=29.04 E-value=1.1e+02 Score=24.96 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHHHHHcCCCeeeCcCCCCCC
Q 027741 33 PKPEPDMIALIRHAINSGITFLDTSDIYGPH 63 (219)
Q Consensus 33 ~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g 63 (219)
+.+.++...+++.|.++|++-+=..++|-.|
T Consensus 16 p~s~eesl~ml~~A~~qGvt~iVaTsHh~~g 46 (254)
T COG4464 16 PKSLEESLAMLREAVRQGVTKIVATSHHLHG 46 (254)
T ss_pred CCcHHHHHHHHHHHHHcCceEEeecccccCC
Confidence 4567899999999999999977766666544
No 42
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.01 E-value=2.9e+02 Score=24.88 Aligned_cols=49 Identities=18% Similarity=0.381 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhcCCCCCeEEEeeeccc
Q 027741 37 PDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERAELATKFGIG 90 (219)
Q Consensus 37 ~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~~I~TK~~~~ 90 (219)
.++.++|+ ++|+..=|--+.-. .+|+.||+..++...-++||.-|....
T Consensus 381 ~e~v~mLr---eaGvE~g~~dDlsT--e~Ek~LG~lV~eky~tdfyildkyP~a 429 (533)
T KOG0556|consen 381 KEGVAMLR---EAGVEMGDEDDLST--ESEKKLGQLVREKYDTDFYILDKYPLA 429 (533)
T ss_pred HHHHHHHH---HcCcccCCccccCC--hhHHHHHHHHHHHhCCcEEEEccCccc
Confidence 44555554 56775444333333 799999999988566789999998654
No 43
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=27.93 E-value=2e+02 Score=24.79 Aligned_cols=60 Identities=23% Similarity=0.338 Sum_probs=41.7
Q ss_pred cCcceeccccCCCC----CCCCCChHHHHHHHHHHHHcCCCeeeCcCCCC-CCcHHHHHHHHhhc
Q 027741 16 VSAQGLGCMGMSAL----YGPPKPEPDMIALIRHAINSGITFLDTSDIYG-PHTNEILLGKAFKG 75 (219)
Q Consensus 16 vs~lglGt~~~~~~----~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~g~sE~~lG~al~~ 75 (219)
|.+|.+|.-.+... .|...+.+++.+.++.+.+.|+..|-.-=+|| +|.+.+.+-+.++.
T Consensus 109 vnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~ 173 (350)
T PRK08446 109 VNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKL 173 (350)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHH
Confidence 55777776555321 35556778899999999999997543333787 67777776666654
No 44
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=27.18 E-value=52 Score=27.23 Aligned_cols=37 Identities=27% Similarity=0.457 Sum_probs=27.1
Q ss_pred ccCcceeccccCCC------CCCCCCChHHHHHHHHHHHHcCC
Q 027741 15 EVSAQGLGCMGMSA------LYGPPKPEPDMIALIRHAINSGI 51 (219)
Q Consensus 15 ~vs~lglGt~~~~~------~~g~~~~~~~~~~~l~~Al~~Gi 51 (219)
+.|-..+|.-.+.. .|..+.+++++.+++..|+++||
T Consensus 158 ~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 158 KLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred ccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhh
Confidence 44555556544332 37767889999999999999997
No 45
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=26.88 E-value=1.8e+02 Score=25.70 Aligned_cols=60 Identities=20% Similarity=0.248 Sum_probs=42.8
Q ss_pred cCcceeccccCCCC----CCCCCChHHHHHHHHHHHHcCCCeeeCcCCCC-CCcHHHHHHHHhhc
Q 027741 16 VSAQGLGCMGMSAL----YGPPKPEPDMIALIRHAINSGITFLDTSDIYG-PHTNEILLGKAFKG 75 (219)
Q Consensus 16 vs~lglGt~~~~~~----~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~g~sE~~lG~al~~ 75 (219)
|.+|.+|.-.+... .|...+.+++.+.++.+.+.|+..+-.-=+|| +|++++-+-+-++.
T Consensus 126 vnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~ 190 (400)
T PRK07379 126 VNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEA 190 (400)
T ss_pred CCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHH
Confidence 56888887655321 35566788899999999999998544334888 67887776666554
No 46
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=25.94 E-value=75 Score=17.82 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=12.3
Q ss_pred HHHHHHHHHhCCCHHHHH
Q 027741 120 ECVNEIAANKGCTPSQLA 137 (219)
Q Consensus 120 ~~l~~la~~~g~t~~q~a 137 (219)
+.+..||++++++..++.
T Consensus 7 Dtl~~IA~~~~~~~~~l~ 24 (44)
T PF01476_consen 7 DTLWSIAKRYGISVDELM 24 (44)
T ss_dssp --HHHHHHHTTS-HHHHH
T ss_pred CcHHHHHhhhhhhHhHHH
Confidence 457789999999888754
No 47
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=25.77 E-value=99 Score=27.20 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCC-HHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCCCCC
Q 027741 117 KLFECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTK-IANLNENIEALSVKITPEEMAELEAIASADNVKGDRYPS 195 (219)
Q Consensus 117 ~~~~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~-~~~l~e~l~a~~~~L~~e~~~~l~~~~~~~~~~~~~~~~ 195 (219)
.+.+-++++-++.++.. +..-|...-...+-|++|... .+.|-+.++.-+.++++.-+-.+..+++ ||.|-+
T Consensus 208 ~Ir~Dir~Fke~~~ldk--ViVLWTANTERy~~V~~GlNdT~enl~~si~~~~~EisPStifA~AsilE-----g~~yiN 280 (512)
T KOG0693|consen 208 QIRKDIREFKEENKLDK--VIVLWTANTERYSNVIPGLNDTAENLLESIEKDESEISPSTIFAIASILE-----GCPYIN 280 (512)
T ss_pred HHHHHHHHHHHhcCCce--EEEEEecCcceeeccccccchHHHHHHHHHhcCccccChHHHHHHHHHHc-----CCCccc
Confidence 34555666667766654 455687777777788999874 6778888888778999999999999987 677877
Q ss_pred CCCCccccccccCC
Q 027741 196 SSGTYKSSTYKTAD 209 (219)
Q Consensus 196 ~~~~~~~~~~~~~~ 209 (219)
+ ||+=.+.+
T Consensus 281 G-----SPQNTfVP 289 (512)
T KOG0693|consen 281 G-----SPQNTFVP 289 (512)
T ss_pred C-----CCccccch
Confidence 7 66655443
No 48
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=25.01 E-value=1.1e+02 Score=22.60 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=21.6
Q ss_pred CCeeeCcCCCCCCcHHHHHHHHhhc--CCCCCeEEEee
Q 027741 51 ITFLDTSDIYGPHTNEILLGKAFKG--GFRERAELATK 86 (219)
Q Consensus 51 i~~~DTA~~Yg~g~sE~~lG~al~~--~~R~~~~I~TK 86 (219)
+--||+|--|| +-+....+.-++ ..-+++.|++=
T Consensus 25 LVKFD~ayPyG--eKhd~F~~~A~e~~~~~~dLLvAeV 60 (126)
T PF07912_consen 25 LVKFDVAYPYG--EKHDAFKKLAKEASASSDDLLVAEV 60 (126)
T ss_dssp EEEEEESS--C--HHHHHHHHHHHHHHCC-SSEEEEEE
T ss_pred EEEEeccCCCc--chHHHHHHHHHHHhcCCCceEEEEe
Confidence 34699999999 777777776533 35567777764
No 49
>PRK11675 LexA regulated protein; Provisional
Probab=24.62 E-value=1e+02 Score=21.30 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHH
Q 027741 117 KLFECVNEIAANKGCTPSQLALA 139 (219)
Q Consensus 117 ~~~~~l~~la~~~g~t~~q~aL~ 139 (219)
+..+.|.++|+++++|.+++.-.
T Consensus 60 dl~ekL~eyAe~~nitRSElIr~ 82 (90)
T PRK11675 60 DLVDALNELAEARNISRSELIEE 82 (90)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHH
Confidence 46789999999999999996544
No 50
>PF10723 RepB-RCR_reg: Replication regulatory protein RepB; InterPro: IPR019661 This family of proteins regulates the replication of rolling circle replication (RCR) plasmids that have a double-strand replication origin (dso). Regulation of the replication of the RCR plasmids occurs mainly at the initiation of leading strand synthesis at the dso, such that concentration of Rep protein controls plasmid replication []. ; PDB: 2KEL_B.
Probab=23.91 E-value=1.5e+02 Score=20.06 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 027741 117 KLFECVNEIAANKGCTPSQLALAWVH 142 (219)
Q Consensus 117 ~~~~~l~~la~~~g~t~~q~aL~w~l 142 (219)
...+.|..+|+..|+|.+|+.=+++.
T Consensus 51 ~~K~~L~~lc~~~GlTQae~IE~LI~ 76 (84)
T PF10723_consen 51 ELKERLEELCKEQGLTQAEMIERLIK 76 (84)
T ss_dssp HHHHHHHHHHHHS---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 45688999999999999997666553
No 51
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=23.91 E-value=1.4e+02 Score=17.36 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHH
Q 027741 117 KLFECVNEIAANKGCTPSQLA 137 (219)
Q Consensus 117 ~~~~~l~~la~~~g~t~~q~a 137 (219)
++.+.|..++++.|++.+.+.
T Consensus 12 el~~~L~~ls~~t~i~~S~Ll 32 (44)
T PF12651_consen 12 ELYEKLKELSEETGIPKSKLL 32 (44)
T ss_pred HHHHHHHHHHHHHCCCHHHHH
Confidence 467889999999999987753
No 52
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=23.40 E-value=1.9e+02 Score=22.87 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=30.5
Q ss_pred hCCCHHHHHHHHHHhCCCCeEeecCCC--CHHHHHHHHHhc
Q 027741 129 KGCTPSQLALAWVHHQGDDVCPIPGTT--KIANLNENIEAL 167 (219)
Q Consensus 129 ~g~t~~q~aL~w~l~~~~v~~vi~g~~--~~~~l~e~l~a~ 167 (219)
...|-.++||+|++.++.-.++|.|+. +.+|.-.|+..+
T Consensus 70 KD~TD~e~Al~~~~~~~~~~i~i~Ga~GgR~DH~lani~~L 110 (203)
T TIGR01378 70 KDTTDLELALKYALERGADEITILGATGGRLDHTLANLNLL 110 (203)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 456889999999998876567777764 688888888765
No 53
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=22.81 E-value=86 Score=16.85 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCCeeeC
Q 027741 40 IALIRHAINSGITFLDT 56 (219)
Q Consensus 40 ~~~l~~Al~~Gi~~~DT 56 (219)
.+.+++++++|+..|=|
T Consensus 10 ~~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMT 26 (30)
T ss_dssp HHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHcCCCEeeC
Confidence 55779999999998866
No 54
>PF13467 RHH_4: Ribbon-helix-helix domain; PDB: 3KK4_C.
Probab=22.46 E-value=1.3e+02 Score=19.50 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhC
Q 027741 118 LFECVNEIAANKGCTPSQLALAWVHHQ 144 (219)
Q Consensus 118 ~~~~l~~la~~~g~t~~q~aL~w~l~~ 144 (219)
..+.|.++|+..|+|.++++-..-...
T Consensus 22 FW~~L~eiA~~~g~s~~~li~~id~~r 48 (67)
T PF13467_consen 22 FWDALEEIAAREGLSLNALIAEIDARR 48 (67)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 567899999999999999887765443
No 55
>PRK08286 cbiC cobalt-precorrin-8X methylmutase; Validated
Probab=21.93 E-value=1.2e+02 Score=24.61 Aligned_cols=33 Identities=24% Similarity=0.171 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecC
Q 027741 121 CVNEIAANKGCTPSQLALAWVHHQGDDVCPIPG 153 (219)
Q Consensus 121 ~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g 153 (219)
...++|++.|+|.+..+++.+..++.-.++++|
T Consensus 107 ~v~e~A~~~g~TRsaaam~~a~~~~~~~IvvIG 139 (214)
T PRK08286 107 RVVELAKEQGITRSMAAVDIAAAEEGPKLFVFG 139 (214)
T ss_pred chHHHHHhcCCcHHHHHHHHHHhccCCcEEEEe
Confidence 456789999999999999988876543355555
No 56
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.92 E-value=2.4e+02 Score=24.54 Aligned_cols=34 Identities=15% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCCC
Q 027741 29 LYGPPKPEPDMIALIRHAINSGITFLDTSDIYGP 62 (219)
Q Consensus 29 ~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~ 62 (219)
.+....+.+...++++.+.+.|++.|=-+|..|-
T Consensus 189 p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~ 222 (347)
T PLN02746 189 PIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGV 222 (347)
T ss_pred CccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCC
Confidence 3444567888999999999999888844444453
No 57
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=21.71 E-value=2.4e+02 Score=25.14 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=42.0
Q ss_pred cCcceeccccCCC----CCCCCCChHHHHHHHHHHHHcCCCeeeCcCCCC-CCcHHHHHHHHhhc
Q 027741 16 VSAQGLGCMGMSA----LYGPPKPEPDMIALIRHAINSGITFLDTSDIYG-PHTNEILLGKAFKG 75 (219)
Q Consensus 16 vs~lglGt~~~~~----~~g~~~~~~~~~~~l~~Al~~Gi~~~DTA~~Yg-~g~sE~~lG~al~~ 75 (219)
+.+|.+|.-.+.. ..+...+.+++.+.++.+.+.|+..+..-=+|| +|.+++.+-+.++.
T Consensus 152 ~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~ 216 (430)
T PRK08208 152 VNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQ 216 (430)
T ss_pred CCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHH
Confidence 4567777655422 134455678899999999999998653335898 78888877776654
No 58
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=21.54 E-value=2.3e+02 Score=25.01 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=38.0
Q ss_pred CcceeccccCCC----CCCCC-CChHHHHHHHHHHHHcCCCeeeCcC----CCCCCcHH-----HHHHHHhhc
Q 027741 17 SAQGLGCMGMSA----LYGPP-KPEPDMIALIRHAINSGITFLDTSD----IYGPHTNE-----ILLGKAFKG 75 (219)
Q Consensus 17 s~lglGt~~~~~----~~g~~-~~~~~~~~~l~~Al~~Gi~~~DTA~----~Yg~g~sE-----~~lG~al~~ 75 (219)
.+.+||.|.+|. .||.. .+.....+.++.+-+.|+..|.-.+ -|+.-.+| +.+.+++++
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~ 79 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDE 79 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 478899998863 25654 2334567889999999999987552 24432222 246666655
No 59
>PRK10945 gene expression modulator; Provisional
Probab=21.17 E-value=2.1e+02 Score=18.83 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHhcCCCCCHHHHHHHHHHh
Q 027741 153 GTTKIANLNENIEALSVKITPEEMAELEAIA 183 (219)
Q Consensus 153 g~~~~~~l~e~l~a~~~~L~~e~~~~l~~~~ 183 (219)
.+++.+-|+..++-..-.|+++|+..+..+.
T Consensus 17 rcss~eTLEkvie~~~~~L~~~E~~~f~~Aa 47 (72)
T PRK10945 17 RCQTIDTLERVIEKNKYELSDDELAVFYSAA 47 (72)
T ss_pred hcCcHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 4678899999999888899999888776654
No 60
>PF02570 CbiC: Precorrin-8X methylmutase; InterPro: IPR003722 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiC and CobH precorrin-8X methylmutase (also known as precorrin isomerase, 5.4.1.2 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. CobH and CbiC from the aerobic and anaerobic pathways, respectively, catalyse a methyl rearrangement in precorrin-8 that moves the methyl group from C-11 to C-12 to produce hydrogenobyrinic acid []. Hydrogenobyrinic acid now contains all the major framework alterations associated with corrin synthesis []. CobH and CbiC can sometimes be fused to other enzymes in the cobalamin pathway to make bifunctional enzymes: e.g., with CobJ/CibH (precorrin-3B C17-methylase/precorrin isomerase, IPR014422 from INTERPRO) and with CbiX (precorrin isomerase, IPR012067 from INTERPRO).; GO: 0016993 precorrin-8X methylmutase activity, 0009236 cobalamin biosynthetic process; PDB: 1V9C_B 1I1H_A 1F2V_A 1OU0_B 2AFV_A 2AFR_A 3E7D_D.
Probab=20.83 E-value=2.1e+02 Score=22.84 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHH
Q 027741 120 ECVNEIAANKGCTPSQLALAWVHHQGDDVCPIPGTTKIANLNENIE 165 (219)
Q Consensus 120 ~~l~~la~~~g~t~~q~aL~w~l~~~~v~~vi~g~~~~~~l~e~l~ 165 (219)
....++|++.|+|.+..+++..+.+..-.++.+|- .|.-|-+.++
T Consensus 93 ~~v~~~A~~~g~TRs~aa~~~a~~~~~~~I~vIGN-APTAL~~ll~ 137 (198)
T PF02570_consen 93 PEVAELAKEEGITRSAAAMRKAAKELPGAIVVIGN-APTALFELLE 137 (198)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHHCTTTTCEEEESS--HHHHHHHHH
T ss_pred CchHHHHhhcCCcHHHHHHHHHHHHcCCcEEEEeC-cHHHHHHHHH
Confidence 45668899999999999999999865445566664 3444444443
No 61
>PF07027 DUF1318: Protein of unknown function (DUF1318); InterPro: IPR008309 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.76 E-value=2.7e+02 Score=19.36 Aligned_cols=29 Identities=28% Similarity=0.188 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 027741 114 HNQKLFECVNEIAANKGCTPSQLALAWVH 142 (219)
Q Consensus 114 ~~~~~~~~l~~la~~~g~t~~q~aL~w~l 142 (219)
.|.+......++|++.|+|+.++.-.+..
T Consensus 45 ~N~~R~~~Y~~iA~~ng~t~~~V~~~~a~ 73 (95)
T PF07027_consen 45 INADRRALYQEIAKKNGITVEQVAATAAQ 73 (95)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35556778889999999999998876653
No 62
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=20.26 E-value=75 Score=27.66 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCCeeeCcC
Q 027741 38 DMIALIRHAINSGITFLDTSD 58 (219)
Q Consensus 38 ~~~~~l~~Al~~Gi~~~DTA~ 58 (219)
....+++.|++.|++++||+.
T Consensus 79 ~~~~v~~~~i~~g~~yvD~~~ 99 (386)
T PF03435_consen 79 FGEPVARACIEAGVHYVDTSY 99 (386)
T ss_dssp GHHHHHHHHHHHT-EEEESS-
T ss_pred hhHHHHHHHHHhCCCeeccch
Confidence 467899999999999999865
No 63
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=20.26 E-value=2.3e+02 Score=21.01 Aligned_cols=47 Identities=17% Similarity=0.080 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHcCCCeeeCcCCCCCCcHHHHHHHHhhcCCCCCe
Q 027741 35 PEPDMIALIRHAINSGITFLDTSDIYGPHTNEILLGKAFKGGFRERA 81 (219)
Q Consensus 35 ~~~~~~~~l~~Al~~Gi~~~DTA~~Yg~g~sE~~lG~al~~~~R~~~ 81 (219)
+.++..++.+.|++.|+.++|-.+.=-...++....+.++..+.+++
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~~~~y~e~~~~~~~~~~~~l 108 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQSTGHYEEYRAAVAATPEEDL 108 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG---HHHHHHHHTT--TTT-
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhhCCCHHHHHHHHhcCChhhc
Confidence 46889999999999999988833322112244444455555344443
No 64
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=20.20 E-value=1.6e+02 Score=26.37 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=32.8
Q ss_pred CcccCcceeccccCCCC-CCCCCChH----HHHHHHHHHHHcCCC--eeeCcCC
Q 027741 13 GLEVSAQGLGCMGMSAL-YGPPKPEP----DMIALIRHAINSGIT--FLDTSDI 59 (219)
Q Consensus 13 g~~vs~lglGt~~~~~~-~g~~~~~~----~~~~~l~~Al~~Gi~--~~DTA~~ 59 (219)
|....+|.||.=.+|.. |... +.+ .+.+++...+++|++ |+|++-.
T Consensus 76 gf~~~~iiLggDHlGPn~Wq~~-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ 128 (421)
T PRK15052 76 GFPRERIILGGDHLGPNCWQQE-PADAAMEKSVELVKAYVRAGFSKIHLDASMS 128 (421)
T ss_pred CCChhcEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCC
Confidence 45556899998888753 6432 223 367888999999998 8898753
Done!