BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027742
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2
Length = 212
Score = 217 bits (552), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 103/197 (52%), Positives = 136/197 (69%), Gaps = 1/197 (0%)
Query: 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
PWL GLGNPG+KY GTRHN VGFEM+D A +GI+MNT K+ G G +G+ PVL+
Sbjct: 17 PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVV 75
Query: 78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
KPQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV ++V+
Sbjct: 76 KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 135
Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
+ G REF RL IGIG PPG+MDP+AFLLQKF++ R +IDTAL++GV+ ++ L+ KG +
Sbjct: 136 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 195
Query: 198 ESARHFNTIQKYKHIRL 214
S FN +QKYK R+
Sbjct: 196 GSTERFNLVQKYKFHRV 212
>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron
Splicing Factor Crs2
Length = 205
Score = 212 bits (539), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 99/190 (52%), Positives = 132/190 (69%), Gaps = 1/190 (0%)
Query: 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
PWL GLGNPG+KY GTRHN VGFEM+D A +GI+MNT+ K+ G G +G+ PVL+
Sbjct: 17 PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVV 75
Query: 78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
KPQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV ++V+
Sbjct: 76 KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 135
Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
+ G REF RL IGIG PPG+MDP+AFLLQKF++ R +IDTAL++GV+ ++ L+ KG +
Sbjct: 136 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 195
Query: 198 ESARHFNTIQ 207
S FN +Q
Sbjct: 196 GSTERFNLVQ 205
>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing
Factor Crs2
Length = 202
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 132/191 (69%), Gaps = 1/191 (0%)
Query: 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLA 77
PWL GLGNPG+KY GTRHN VGFEM+D A +GI+MNT K+ G G +G+ PVL+
Sbjct: 5 PWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVV 63
Query: 78 KPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMN 137
KPQ+YMN SGE+ GPLAAYY++PL +L+ +DD LP GV ++V+
Sbjct: 64 KPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIE 123
Query: 138 NFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 197
+ G REF RL IGIG PPG+MDP+AFLLQKF++ R +IDTAL++GV+ ++ L+ KG +
Sbjct: 124 HLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFS 183
Query: 198 ESARHFNTIQK 208
S FN +QK
Sbjct: 184 GSTERFNLVQK 194
>pdb|2LGJ|A Chain A, Solution Structure Of Mspth
Length = 191
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 110/197 (55%), Gaps = 8/197 (4%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDA 72
+A P L VGLGNPG Y TRHN +GF + D A G S VH K A G +
Sbjct: 1 MAEPLLVVGLGNPGPTYAKTRHN-LGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGT 58
Query: 73 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXX 132
V+LAKP+ YMN SG GPLA +Y +P +++V HD++ + G
Sbjct: 59 SVVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGL 118
Query: 133 KSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLL 192
+SV + G + F R+RIG+GRPPG+ DP AF+L+ F A R + T +++ + +LL+
Sbjct: 119 RSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERAEVPTIVEQAADATELLI 177
Query: 193 SKGLTESARHFNTIQKY 209
++GL E A+ NT+ +
Sbjct: 178 AQGL-EPAQ--NTVHAW 191
>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis
pdb|3KK0|A Chain A, Crystal Structure Of Partially Folded Intermediate State
Of Peptidyl- Trna Hydrolase From Mycobacterium Smegmatis
pdb|3P2J|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Smegmatis At 2.2 A Resolution
Length = 191
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 109/197 (55%), Gaps = 8/197 (4%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCK--ATFGQGFVGDA 72
+A P L VGLGNPG Y TRHN +GF + D A G S VH K A G +
Sbjct: 1 MAEPLLVVGLGNPGPTYAKTRHN-LGFMVADVLAGRIG-SAFKVHKKSGAEVVTGRLAGT 58
Query: 73 PVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXX 132
V+LAKP+ MN SG GPLA +Y +P +++V HD++ + G
Sbjct: 59 TVVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDFGRIRLKLGGGEGGHNGL 118
Query: 133 KSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLL 192
+SV + G + F R+RIG+GRPPG+ DP AF+L+ F + R + T +++ + +LL+
Sbjct: 119 RSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERAEVPTIVEQAADATELLI 177
Query: 193 SKGLTESARHFNTIQKY 209
++GL E A+ NT+ +
Sbjct: 178 AQGL-EPAQ--NTVHAW 191
>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|A Chain A, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2J|B Chain B, Crystal Structure Of Peptidyl-trna Hydrolase From
Mycobacterium Tuberculosis
pdb|2Z2K|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis
pdb|3TCK|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 4
pdb|3TCN|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TCN|B Chain B, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 2 Grown In Presence Of
Pentaglycine
pdb|3TD2|A Chain A, Crystal Structures Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis - Form 5
pdb|3TD6|A Chain A, Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis
From Trigonal Partially Dehydrated Crystal
Length = 191
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 3/183 (1%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAP 73
+A P L VGLGNPG Y TRHN +GF + D A G A G
Sbjct: 1 MAEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRS 59
Query: 74 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 133
++LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +
Sbjct: 60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119
Query: 134 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 193
SV+ G ++F R+RIGIGRPPG+ DP AF+L+ F R + T ++ + +LL+
Sbjct: 120 SVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIE 178
Query: 194 KGL 196
+G+
Sbjct: 179 QGM 181
>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From
Mycobacterium Tuberculosis H37rv
Length = 204
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 3/183 (1%)
Query: 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAP 73
+A P L VGLGNPG Y TRHN +GF + D A G A G
Sbjct: 1 MAEPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRS 59
Query: 74 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 133
++LAKP+ YMN SG GPLA +Y + ++V HDD+ L G +
Sbjct: 60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119
Query: 134 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 193
SV+ G ++F R+RIGIGRPPG+ DP AF+L+ F R + T ++ + +LL+
Sbjct: 120 SVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIE 178
Query: 194 KGL 196
+G+
Sbjct: 179 QGM 181
>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
pdb|3VJR|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli In Complex With The
Cca-Acceptor-T[psi]c Domain Of Trna
Length = 197
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 8/192 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVL 75
L VGL NPG +Y TRHN G +D AE + +A F + +G V
Sbjct: 8 LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVR 63
Query: 76 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 135
L P T+MNLSG++ +A+++++ + +LV HD++ LP GV K +
Sbjct: 64 LLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI 123
Query: 136 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 195
++ N F RLRIGIG P + F+L K ++ ID A+ E ++ + G
Sbjct: 124 ISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDG 183
Query: 196 LTESARHFNTIQ 207
LT++ + +
Sbjct: 184 LTKATNRLHAFK 195
>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli
Length = 193
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 8/192 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVL 75
L VGL NPG +Y TRHN G +D AE + +A F + +G V
Sbjct: 4 LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVR 59
Query: 76 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 135
L P T+MNLSG++ +A+++++ + +LV HD++ LP GV K +
Sbjct: 60 LLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI 119
Query: 136 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 195
++ N F RLRIGIG P + F+L K ++ ID A+ E ++ + G
Sbjct: 120 ISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDG 179
Query: 196 LTESARHFNTIQ 207
LT++ + +
Sbjct: 180 LTKATNRLHAFK 191
>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
pdb|3OFV|C Chain C, Crystal Structure Of Peptidyl-Trna Hydrolase From
Escherichia Coli, I222 Crystal Form
Length = 211
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 90/184 (48%), Gaps = 8/184 (4%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATF----GQGFVGDAPVL 75
L VGL NPG +Y TRHN G +D AE + +A F + +G V
Sbjct: 25 LIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLRE---EAKFFGYTSRVTLGGEDVR 80
Query: 76 LAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSV 135
L P T+MNLSG++ +A+++++ + +LV HD++ LP GV K +
Sbjct: 81 LLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDI 140
Query: 136 MNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 195
++ N F RLRIGIG P + F+L K ++ ID A+ E ++ + G
Sbjct: 141 ISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDG 200
Query: 196 LTES 199
LT++
Sbjct: 201 LTKA 204
>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From
Burkholderia Thailandensis
Length = 222
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 14/192 (7%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAK 78
L VGLGNPG +Y TRHN GF ++D A G ++ + + + + V L +
Sbjct: 25 LIVGLGNPGAEYTATRHN-AGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLE 83
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 138
PQTYMN SG+S LA ++K+ N +LV HD++ LP G K + +
Sbjct: 84 PQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAH 143
Query: 139 FRGNREFARLRIGIGRPPGQMDPKA----------FLLQKFNAIARERIDTALQEGVEVL 188
++++ RLRIGIG P + A F+L+ ++ ID A++ + V+
Sbjct: 144 L-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVM 202
Query: 189 KLLLSKGLTESA 200
++ KG TE A
Sbjct: 203 PAVV-KGETERA 213
>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Acinetobacter Baumannii At 1.86 A Resolution
pdb|4FOT|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 2.20 A Resolution
pdb|4HOY|A Chain A, Crystal Structure Of Peptidyl- Trna Hydrolase From
Acinetobacter Baumannii At 1.78 A Resolution
pdb|4IKO|A Chain A, Structure Of Peptidyl- Trna Hydrolase From Acinetobacter
Baumannii At 1.90 A Resolution
Length = 193
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 93/192 (48%), Gaps = 7/192 (3%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAK 78
L VGLGNPG +Y TRHN GF ++ A+ GI++ N G+G + V L
Sbjct: 6 LIVGLGNPGSEYAQTRHN-AGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLL 64
Query: 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 138
P TYMN SG+S P + +Y++ +L+ HD++ + GV + ++ +
Sbjct: 65 PMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPH 124
Query: 139 FRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 198
N F RLRIGIG P + +L K + + +D A+ + +KLL+ + +
Sbjct: 125 IGPN--FHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQ 182
Query: 199 SARHFNTIQKYK 210
+ N I YK
Sbjct: 183 A---MNQINAYK 191
>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase
Length = 199
Score = 87.4 bits (215), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APV 74
L VGLGNPG +Y TRHN G ++ A +QG+S+ V + FG VG V
Sbjct: 12 LIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDV 66
Query: 75 LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 134
L P TYMN SG+S LA ++++ + +LV HD++ +P GV +
Sbjct: 67 RLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRD 126
Query: 135 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 194
++ F RLR+GIG P ++L + +E +DT++ + VL +L+
Sbjct: 127 IIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAG 186
Query: 195 GLTESARHFNT 205
T + + ++
Sbjct: 187 DWTRAMQKLHS 197
>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DHW|B Chain B, Crystal Structure Of Peptidyl-Trna Hydrolase From
Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom
Resolution
pdb|4DJJ|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4DJJ|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Pimelic Acid
At 2.9 Angstrom Resolution
pdb|4ERX|A Chain A, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4ERX|B Chain B, Crystal Structure Of The Complex Of Peptidyl-Trna
Hydrolase From Pseudomonas Aeruginosa With Diethylene
Glycol At 2.5 Angstrom Resolution
pdb|4FNO|A Chain A, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
pdb|4FNO|B Chain B, Crystal Structure Of Peptidyl T-Rna Hydrolase From
Pseudomonas Aeruginosa At 2.2 Angstrom Resolution
Length = 194
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 10/191 (5%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGD-----APV 74
L VGLGNPG +Y TRHN G ++ A +QG+S+ V + FG VG V
Sbjct: 6 LIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDV 60
Query: 75 LLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKS 134
L P TYMN SG+S LA ++++ + +LV HD++ +P GV +
Sbjct: 61 RLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRD 120
Query: 135 VMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSK 194
++ F RLR+GIG P ++L + +E +DT++ + VL +L+
Sbjct: 121 IIAQLGNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAG 180
Query: 195 GLTESARHFNT 205
T + + ++
Sbjct: 181 DWTRAMQKLHS 191
>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From
Francisella Tularensis
Length = 207
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 87/180 (48%), Gaps = 7/180 (3%)
Query: 20 LFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT---VHCKATFGQGFVGDAPVLL 76
+ +GLGN G +Y+ TRHN VG I A+ S ++ ++C + + V+L
Sbjct: 25 MIIGLGNIGKEYQDTRHN-VGEWFIAKIAQDNNQSFSSNPKLNC--NLAKVSIDYNNVVL 81
Query: 77 AKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVM 136
P TYMN SG + +A +YK+ +LV HD++ + G +S+
Sbjct: 82 VFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSI- 140
Query: 137 NNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGL 196
N G ++ RLRIGIG P + ++L + ++ ID+A+ G+ L +++ L
Sbjct: 141 NQHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKL 200
>pdb|1Y4T|A Chain A, Ferric Binding Protein From Campylobacter Jejuni
pdb|1Y4T|D Chain D, Ferric Binding Protein From Campylobacter Jejuni
pdb|3E13|X Chain X, Iron Reconstituted Ferric Binding Protein From
Campylobacter Jejuni
Length = 322
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 33 GTRHNQVGFEMIDAFAESQGISMNTVHCKAT 63
RH FE+I F E GI +N KA+
Sbjct: 8 SARHYNADFEIIKKFEEKTGIKVNHTQAKAS 38
>pdb|3S5T|A Chain A, Crystal Structure Of A Member Of Duf3298 Family (Bf2082)
From Bacteroides Fragilis Nctc 9343 At 2.30 A
Resolution
Length = 265
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 54 SMNTVHCKATFGQGFVGDAPVLLAKPQT 81
S+N+ A FG+G++G+ P + K T
Sbjct: 56 SLNSYFIAACFGEGYIGEKPAQVVKEYT 83
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,013,614
Number of Sequences: 62578
Number of extensions: 219166
Number of successful extensions: 578
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 17
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)