Query 027742
Match_columns 219
No_of_seqs 215 out of 1047
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 00:50:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027742.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027742hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pth_A Peptidyl-tRNA hydrolase 100.0 4.1E-79 1.4E-83 519.7 19.9 187 18-206 2-190 (193)
2 2z2i_A PTH, peptidyl-tRNA hydr 100.0 3.7E-79 1.3E-83 519.2 17.1 187 17-205 3-190 (191)
3 1ryb_A CRS2; alpha-beta, hydro 100.0 1.1E-78 3.9E-83 520.8 18.7 190 15-205 14-203 (205)
4 4hoy_A PTH, peptidyl-tRNA hydr 100.0 3E-78 1E-82 514.3 20.0 189 17-208 3-192 (193)
5 4fyj_A PTH, peptidyl-tRNA hydr 100.0 2.9E-78 9.9E-83 516.4 19.6 188 17-206 9-198 (199)
6 3v2i_A PTH, peptidyl-tRNA hydr 100.0 1.8E-77 6.3E-82 518.5 19.9 189 16-206 21-220 (222)
7 3nea_A PTH, peptidyl-tRNA hydr 100.0 7E-78 2.4E-82 516.5 15.7 185 17-203 22-207 (207)
8 4fno_A PTH, peptidyl-tRNA hydr 100.0 3.2E-79 1.1E-83 520.6 0.0 187 18-206 4-192 (194)
9 1cfz_A Hydrogenase 2 maturatio 93.0 0.85 2.9E-05 36.5 10.0 134 18-188 2-149 (162)
10 2e85_A Hydrogenase 3 maturatio 59.7 8.4 0.00029 30.6 3.8 133 18-193 5-147 (159)
11 2jva_A Peptidyl-tRNA hydrolase 58.4 4 0.00014 31.0 1.7 41 105-153 2-44 (108)
12 4dh9_Y YAEJ; ribosome, YAEJ, r 51.1 3.3 0.00011 32.9 0.1 41 105-153 2-44 (140)
13 3pu6_A Uncharacterized protein 50.8 11 0.00039 29.8 3.2 135 18-193 4-146 (157)
14 2ea9_A JW2626, hypothetical pr 50.5 16 0.00054 27.7 3.7 33 162-195 34-66 (105)
15 2inw_A Putative structural pro 49.5 20 0.0007 28.1 4.4 30 166-195 51-80 (133)
16 2ba3_A NIKA; dimer, bacterial 46.7 10 0.00036 24.1 2.0 41 152-192 4-45 (51)
17 3utn_X Thiosulfate sulfurtrans 42.2 23 0.00078 31.3 4.1 36 79-114 90-125 (327)
18 4hbl_A Transcriptional regulat 35.4 43 0.0015 24.7 4.2 31 163-193 118-148 (149)
19 2zet_C Melanophilin; complex, 32.3 70 0.0024 25.4 5.2 36 166-202 14-49 (153)
20 1am7_A Lysozyme; glycosidase, 31.3 49 0.0017 26.6 4.1 40 166-205 83-122 (158)
21 3kp7_A Transcriptional regulat 29.8 65 0.0022 23.6 4.4 30 163-192 119-148 (151)
22 1lj9_A Transcriptional regulat 29.2 61 0.0021 23.4 4.1 32 162-193 108-139 (144)
23 2cqq_A RSGI RUH-037, DNAJ homo 26.6 1.1E+02 0.0039 21.0 4.9 40 167-206 9-55 (72)
24 2l32_A Small archaeal modifier 26.4 44 0.0015 23.1 2.7 31 87-117 20-50 (74)
25 3deu_A Transcriptional regulat 26.2 42 0.0014 25.6 2.8 32 162-193 133-164 (166)
26 3mtn_B UBA80, ubcep1, ubiquiti 25.7 55 0.0019 21.8 3.1 39 93-131 33-85 (85)
27 2k9i_A Plasmid PRN1, complete 24.7 60 0.002 20.1 2.9 30 153-183 1-30 (55)
28 3fzq_A Putative hydrolase; YP_ 24.0 42 0.0014 26.8 2.5 24 87-110 202-225 (274)
29 2llk_A Cyclin-D-binding MYB-li 23.9 1.7E+02 0.0058 20.2 5.4 40 166-205 23-65 (73)
30 3r4c_A Hydrolase, haloacid deh 23.3 42 0.0014 26.9 2.4 24 87-110 196-219 (268)
31 1c8b_A Spore protease; novel f 23.1 59 0.002 29.7 3.5 93 15-124 111-214 (371)
32 3ddh_A Putative haloacid dehal 23.1 51 0.0017 24.8 2.7 29 86-114 159-189 (234)
33 3dnp_A Stress response protein 21.5 47 0.0016 26.9 2.4 59 86-170 203-262 (290)
34 1j26_A Immature colon carcinom 21.5 46 0.0016 25.2 2.1 35 110-152 14-50 (112)
35 1zbd_B Rabphilin-3A; G protein 21.4 1E+02 0.0035 23.8 4.1 36 166-202 7-42 (134)
36 3dao_A Putative phosphatse; st 21.2 50 0.0017 27.0 2.5 24 87-110 213-236 (283)
37 3mpo_A Predicted hydrolase of 21.1 44 0.0015 26.9 2.1 25 86-110 198-222 (279)
38 1w94_A MIL, probable BRIX-doma 21.0 68 0.0023 25.4 3.1 32 80-114 27-58 (156)
39 4dw8_A Haloacid dehalogenase-l 20.9 46 0.0016 26.8 2.1 24 87-110 199-222 (279)
40 3pgv_A Haloacid dehalogenase-l 20.6 50 0.0017 27.0 2.4 24 87-110 211-234 (285)
41 2pq0_A Hypothetical conserved 20.6 43 0.0015 26.8 1.9 58 87-170 185-243 (258)
42 3b64_A Macrophage migration in 20.3 67 0.0023 23.1 2.8 23 93-116 84-106 (112)
No 1
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=100.00 E-value=4.1e-79 Score=519.68 Aligned_cols=187 Identities=35% Similarity=0.638 Sum_probs=179.5
Q ss_pred CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHh
Q 027742 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 96 (219)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~ 96 (219)
|+|||||||||++|++|||| ||||++|+||++++.+++ +.++.+.++++.+.+++|+|+||+||||+||+||+++++|
T Consensus 2 m~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~ 80 (193)
T 2pth_A 2 IKLIVGLANPGAEYAATRHN-AGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASF 80 (193)
T ss_dssp CCEEEECCCCSTTTTTSGGG-HHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHH
T ss_pred cEEEEEECCCCcccccCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHH
Confidence 68999999999999999999 999999999999999986 5678999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcC-CCCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027742 97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRG-NREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 175 (219)
Q Consensus 97 ~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~g-t~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~ 175 (219)
|+|++++|||||||||||+|++|+|.+||+|||||||||+++| | |++|+|||||||||.++.++++|||++|+++|++
T Consensus 81 yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-g~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 159 (193)
T 2pth_A 81 FRINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKL-GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK 159 (193)
T ss_dssp HTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHT-TSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHH
T ss_pred hCCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999 6 8999999999999964456999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHhhhch
Q 027742 176 RIDTALQEGVEVLKLLLSKGLTESARHFNTI 206 (219)
Q Consensus 176 ~l~~~i~~a~~~l~~~i~~~~~~amn~~n~~ 206 (219)
.++++++.|++|++.|+++++++|||+||+.
T Consensus 160 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 190 (193)
T 2pth_A 160 LIDEAIDEAARCTEMWFTDGLTKATNRLHAF 190 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHhCc
Confidence 9999999999999999999999999999974
No 2
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=100.00 E-value=3.7e-79 Score=519.18 Aligned_cols=187 Identities=41% Similarity=0.792 Sum_probs=169.1
Q ss_pred CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027742 17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA 95 (219)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~ 95 (219)
.|+|||||||||++|++|||| ||||++|+||++++.++.+ .++.+.++++.+.+++|+|+||+||||+||+||+++++
T Consensus 3 ~m~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~ 81 (191)
T 2z2i_A 3 EPLLVVGLGNPGANYARTRHN-LGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAK 81 (191)
T ss_dssp SCEEEEECCCCSHHHHTBGGG-HHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHH
T ss_pred ccEEEEEECCCCchhccCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHH
Confidence 479999999999999999999 9999999999999999865 46889999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027742 96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 175 (219)
Q Consensus 96 ~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~ 175 (219)
||+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++
T Consensus 82 ~yki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 160 (191)
T 2z2i_A 82 FYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERA 160 (191)
T ss_dssp HTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHT
T ss_pred HhCCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999 69999999999999965567999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHhhhc
Q 027742 176 RIDTALQEGVEVLKLLLSKGLTESARHFNT 205 (219)
Q Consensus 176 ~l~~~i~~a~~~l~~~i~~~~~~amn~~n~ 205 (219)
.++++++.|++|++.|+++++++|||+||+
T Consensus 161 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~ 190 (191)
T 2z2i_A 161 EVPTICEQAADATELLIEQGMEPAQNRVHA 190 (191)
T ss_dssp THHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence 999999999999999999999999999995
No 3
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=100.00 E-value=1.1e-78 Score=520.83 Aligned_cols=190 Identities=57% Similarity=1.056 Sum_probs=177.1
Q ss_pred CCCCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHH
Q 027742 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA 94 (219)
Q Consensus 15 ~~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~ 94 (219)
++.++|||||||||++|++|||| ||||++|+||+++++++++.++.+.++++.+.+++|+|+||+||||+||+||++++
T Consensus 14 ~~~~~LIVGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~ 92 (205)
T 1ryb_A 14 EYTPWLIAGLGNPGNKYYGTRHN-VGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLA 92 (205)
T ss_dssp -CCCEEEEECCCCSGGGTTBGGG-HHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred CCCCEEEEEECCCChhhccCchH-HHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHH
Confidence 46789999999999999999999 99999999999999998877899999999999999999999999999999999999
Q ss_pred HhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHH
Q 027742 95 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 174 (219)
Q Consensus 95 ~~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~ 174 (219)
+||+|++++|||||||||||+|++|+|.+||+|||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|+
T Consensus 93 ~~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~ 172 (205)
T 1ryb_A 93 AYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEER 172 (205)
T ss_dssp HHTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHH
T ss_pred HHhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHH
Confidence 99999999999999999999999999999999999999999999934889999999999997656799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHhhhc
Q 027742 175 ERIDTALQEGVEVLKLLLSKGLTESARHFNT 205 (219)
Q Consensus 175 ~~l~~~i~~a~~~l~~~i~~~~~~amn~~n~ 205 (219)
+.|+++++.|++|++.|+++++++|||+||.
T Consensus 173 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~ 203 (205)
T 1ryb_A 173 VQIDTALEQGVDAVRTLVLKGFSGSTERFNL 203 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----CCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 9999999999999999999999999999996
No 4
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=100.00 E-value=3e-78 Score=514.33 Aligned_cols=189 Identities=35% Similarity=0.655 Sum_probs=181.2
Q ss_pred CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027742 17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA 95 (219)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~ 95 (219)
.++|||||||||++|++|||| |||+++|+||++++.++++ .++.+.+++..+.+++++|+||+||||+||+||+++++
T Consensus 3 ~ikLIVGLGNPG~~Y~~TRHN-iGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~ 81 (193)
T 4hoy_A 3 NISLIVGLGNPGSEYAQTRHN-AGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSK 81 (193)
T ss_dssp CCCEEEECCCCSTTTTTBGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHH
T ss_pred CceEEEEcCCCchhhCcCccc-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHH
Confidence 368999999999999999999 9999999999999999855 57889999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027742 96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 175 (219)
Q Consensus 96 ~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~ 175 (219)
||+|+++++||||||||||+|++|+|.+||+|||||||||+++| || ||+|||||||||+++.++++|||++|+++|++
T Consensus 82 ~~ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 159 (193)
T 4hoy_A 82 FYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQS 159 (193)
T ss_dssp HTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHH
T ss_pred HcCCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999 56 79999999999988888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHhhhchhh
Q 027742 176 RIDTALQEGVEVLKLLLSKGLTESARHFNTIQK 208 (219)
Q Consensus 176 ~l~~~i~~a~~~l~~~i~~~~~~amn~~n~~~~ 208 (219)
.++++++.|+++++.|+++++++|||+||++++
T Consensus 160 ~l~~~i~~a~~~i~~~~~~~~~~amn~~n~~kp 192 (193)
T 4hoy_A 160 LMDGAIDHALSKVKLLVQGQVPQAMNQINAYKP 192 (193)
T ss_dssp HHHHHHHHHHHTHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHhCCCC
Confidence 999999999999999999999999999998654
No 5
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=2.9e-78 Score=516.39 Aligned_cols=188 Identities=35% Similarity=0.622 Sum_probs=180.5
Q ss_pred CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCc-cccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027742 17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA 95 (219)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~-~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~ 95 (219)
...|||||||||++|++|||| ||||++|+||++++.++.+ .+|.+.++++.+++++++|+||+||||+||+||+++++
T Consensus 9 ~~~lIvGLGNPG~~Y~~TRHN-vGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~ 87 (199)
T 4fyj_A 9 AVQLIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAG 87 (199)
T ss_dssp CCCEEEECCCCSGGGTTCGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred eeeEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHH
Confidence 457999999999999999999 9999999999999998864 47889999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCC-CccEEEEeecCCCCCCCccccccCcCCHHHH
Q 027742 96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNR-EFARLRIGIGRPPGQMDPKAFLLQKFNAIAR 174 (219)
Q Consensus 96 ~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~-~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~ 174 (219)
||+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||+ +|+|||||||||+.+.++++|||++|+++|+
T Consensus 88 ~yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~ 166 (199)
T 4fyj_A 88 FFRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQ 166 (199)
T ss_dssp HTTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHH
T ss_pred HhCCCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHH
Confidence 99999999999999999999999999999999999999999999 687 9999999999998777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHhhhch
Q 027742 175 ERIDTALQEGVEVLKLLLSKGLTESARHFNTI 206 (219)
Q Consensus 175 ~~l~~~i~~a~~~l~~~i~~~~~~amn~~n~~ 206 (219)
+.|+++++.|++|++.|+++++++|||+||+.
T Consensus 167 ~~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 198 (199)
T 4fyj_A 167 ELLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ 198 (199)
T ss_dssp HHHHHHHHHHHHTHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 99999999999999999999999999999974
No 6
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=100.00 E-value=1.8e-77 Score=518.51 Aligned_cols=189 Identities=34% Similarity=0.612 Sum_probs=175.9
Q ss_pred CCCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHH
Q 027742 16 ARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLA 94 (219)
Q Consensus 16 ~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~ 94 (219)
..+||||||||||++|++|||| ||||++|+||++++.++.+. +|.+.++++.+.+++|+|+||+||||+||++|++++
T Consensus 21 m~~~LIVGLGNPG~~Y~~TRHN-iGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~ 99 (222)
T 3v2i_A 21 SMIKLIVGLGNPGAEYTATRHN-AGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALA 99 (222)
T ss_dssp -CCCEEEECCCCSGGGTTSGGG-HHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHH
T ss_pred ceEEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHH
Confidence 4568999999999999999999 99999999999999998664 688999999999999999999999999999999999
Q ss_pred HhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCC----------CCCCCcccc
Q 027742 95 AYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRP----------PGQMDPKAF 164 (219)
Q Consensus 95 ~~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP----------~~~~~v~~y 164 (219)
+||+|++++|||||||||||+|++|+|.+||+|||||||||+++| ||++|+||||||||| +.+.++++|
T Consensus 100 ~~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~y 178 (222)
T 3v2i_A 100 HFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANF 178 (222)
T ss_dssp HHHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHH
T ss_pred HHhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHH
Confidence 999999999999999999999999999999999999999999999 699999999999999 555689999
Q ss_pred ccCcCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhch
Q 027742 165 LLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTI 206 (219)
Q Consensus 165 VL~~F~~~E~~~l~~~i~~a~~~l~~~i~~~~~~amn~~n~~ 206 (219)
||++|+++|++.|++++++|++|++.|+++++++|||+||+.
T Consensus 179 VL~~fs~~E~~~l~~~i~~a~~av~~~~~~~~~~amn~~n~~ 220 (222)
T 3v2i_A 179 VLKPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHRN 220 (222)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHC---
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999974
No 7
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=100.00 E-value=7e-78 Score=516.45 Aligned_cols=185 Identities=32% Similarity=0.604 Sum_probs=178.7
Q ss_pred CCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCcc-ccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHH
Q 027742 17 RPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAA 95 (219)
Q Consensus 17 ~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~-k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~ 95 (219)
.|||||||||||++|++|||| ||||++|+||++++.++.+. +|.+.++++.+++++++|+||+||||+||++|+++++
T Consensus 22 ~~~LIVGLGNPG~~Y~~TRHN-vGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~ 100 (207)
T 3nea_A 22 KIKMIIGLGNIGKEYQDTRHN-VGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVAN 100 (207)
T ss_dssp CCCEEEECCCCSTTTTTSGGG-HHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHH
T ss_pred CcEEEEEeCCCchhhCcCchH-HHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHH
Confidence 489999999999999999999 99999999999999998765 7889999999999999999999999999999999999
Q ss_pred hcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027742 96 YYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 175 (219)
Q Consensus 96 ~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~ 175 (219)
||+|+++++||||||||||+|++|+|.+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++
T Consensus 101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~ 179 (207)
T 3nea_A 101 FYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKK 179 (207)
T ss_dssp HHTCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHH
T ss_pred HhCCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHH
Confidence 99999999999999999999999999999999999999999999 69999999999999987778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHhh
Q 027742 176 RIDTALQEGVEVLKLLLSKGLTESARHF 203 (219)
Q Consensus 176 ~l~~~i~~a~~~l~~~i~~~~~~amn~~ 203 (219)
.|++++++|++|++.|+++++++|||++
T Consensus 180 ~l~~~i~~a~~a~~~~~~~~~~~amn~~ 207 (207)
T 3nea_A 180 DIDSAIDNGICFLDDIINYKLEPVMQKL 207 (207)
T ss_dssp HHHHHHHHHHHTHHHHHTTCCCSCSTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHhcC
Confidence 9999999999999999999999999874
No 8
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=3.2e-79 Score=520.60 Aligned_cols=187 Identities=35% Similarity=0.623 Sum_probs=178.4
Q ss_pred CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCC-ccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHh
Q 027742 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAY 96 (219)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~-~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~ 96 (219)
|+|||||||||++|++|||| ||||++|+||++++.++. +.+|.+.++++.+.+++|+|+||+||||+||+||+++++|
T Consensus 4 m~LIvGLGNPG~~Y~~TRHN-iGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~f 82 (194)
T 4fno_A 4 VQLIVGLGNPGPEYDQTRHN-AGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGF 82 (194)
Confidence 68999999999999999999 999999999999999876 4578899999889999999999999999999999999999
Q ss_pred cCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCC-CCccEEEEeecCCCCCCCccccccCcCCHHHHH
Q 027742 97 YKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGN-REFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 175 (219)
Q Consensus 97 ~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt-~~f~RlrIGIGrP~~~~~v~~yVL~~F~~~E~~ 175 (219)
|+|+++++||||||||||+|++|+|.+||+|||||||||+++| || ++|+|||||||||.++.++++|||++|+++|++
T Consensus 83 yki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 161 (194)
T 4fno_A 83 FRIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQE 161 (194)
Confidence 9999999999999999999999999999999999999999999 68 899999999999965557999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHhhhch
Q 027742 176 RIDTALQEGVEVLKLLLSKGLTESARHFNTI 206 (219)
Q Consensus 176 ~l~~~i~~a~~~l~~~i~~~~~~amn~~n~~ 206 (219)
.++++++.|++|++.|+++++++|||+||..
T Consensus 162 ~l~~~i~~a~~a~~~~~~~~~~~amn~~n~~ 192 (194)
T 4fno_A 162 LLDTSIDFALGVLPEMLAGDWTRAMQKLHSQ 192 (194)
Confidence 9999999999999999999999999999973
No 9
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=92.99 E-value=0.85 Score=36.49 Aligned_cols=134 Identities=20% Similarity=0.244 Sum_probs=71.2
Q ss_pred CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhc
Q 027742 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 97 (219)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 97 (219)
+.+|+|+|||=.. -== +|..++++|.+++..+. .+-++--.| .|..+...+.
T Consensus 2 ~ilVlGiGN~l~g----DDG-~G~~v~~~L~~~~~~p~-----------------~v~vid~gt----~~~~l~~~l~-- 53 (162)
T 1cfz_A 2 RILVLGVGNILLT----DEA-IGVRIVEALEQRYILPD-----------------YVEILDGGT----AGMELLGDMA-- 53 (162)
T ss_dssp CEEEEEESCTTBG----GGG-HHHHHHHHHHHHEECCT-----------------TEEEEEEET----CCGGGHHHHS--
T ss_pred CEEEEEECCcccc----ccc-HHHHHHHHHHhhCCCCC-----------------CeEEEECCC----CHHHHHHHHh--
Confidence 3689999999321 123 99999999998754321 111111111 1222211121
Q ss_pred CCCCCceEEEee---cCCCCCceEEEec--------CCCCCCCC-chhhHHHhhcCCCCcc-EE-EEeecCCCCCCCccc
Q 027742 98 KLPLNRVLVFHD---DMGLPCGVLRLRH--------NGGHGGHN-GLKSVMNNFRGNREFA-RL-RIGIGRPPGQMDPKA 163 (219)
Q Consensus 98 ki~~~~ilVihD---Dldlp~G~irlk~--------gGs~gGHN-GLkSIi~~L~gt~~f~-Rl-rIGIGrP~~~~~v~~ 163 (219)
-.+.+||.| +.+.++|+++.-. ..+...|+ |+..+++.+.-..+++ ++ =||| .|. ++ +
T Consensus 54 ---~~d~lIiVDA~~~~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~g~~P~~v~ligi-~p~---~~-~ 125 (162)
T 1cfz_A 54 ---NRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGV-IPE---SL-E 125 (162)
T ss_dssp ---SCSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEE-CCS---CC-C
T ss_pred ---CCCEEEEEEehhhcCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEE-EEe---Ec-C
Confidence 136777778 6688999988632 11223344 7888777652122455 33 4577 343 22 3
Q ss_pred cccCcCCHHHHHHHHHHHHHHHHHH
Q 027742 164 FLLQKFNAIARERIDTALQEGVEVL 188 (219)
Q Consensus 164 yVL~~F~~~E~~~l~~~i~~a~~~l 188 (219)
+ -...|++=++.++++++.+.+.+
T Consensus 126 ~-g~~LS~~v~~av~~a~~~i~~~l 149 (162)
T 1cfz_A 126 P-HIGLTPTVEAMIEPALEQVLAAL 149 (162)
T ss_dssp S-BSSCCHHHHTTHHHHHHHHHHHH
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHHH
Confidence 3 34566655555555444444433
No 10
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=59.68 E-value=8.4 Score=30.55 Aligned_cols=133 Identities=15% Similarity=0.149 Sum_probs=70.1
Q ss_pred CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhc
Q 027742 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 97 (219)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 97 (219)
..||+|+|||=.. -== +|..++++|.+.+. . .+-++--.| .|..+...+..+
T Consensus 5 ~~lVlGiGN~l~g----DDG-~G~~v~~~L~~~~~---~----------------~v~vid~gt----~~~~l~~~l~~~ 56 (159)
T 2e85_A 5 TDVLLCVGNSMMG----DDG-AGPLLAEKCAAAPK---G----------------NWVVIDGGS----APENDIVAIREL 56 (159)
T ss_dssp CEEEEEECCGGGG----GGG-HHHHHHHHHHHSCC---T----------------TCEEEECTT----CSGGGHHHHHHH
T ss_pred CEEEEEECCcccc----ccc-HHHHHHHHHhhhCC---C----------------CeEEEECCC----CHHHHHHHHhcC
Confidence 3699999999321 113 99999999987521 0 111221111 122222222222
Q ss_pred CCCCCceEEEee--cCCCCCceEEEec------C-CCCCCCCchhhHHHhhcCCCCccEEE-EeecCCCCCCCccccccC
Q 027742 98 KLPLNRVLVFHD--DMGLPCGVLRLRH------N-GGHGGHNGLKSVMNNFRGNREFARLR-IGIGRPPGQMDPKAFLLQ 167 (219)
Q Consensus 98 ki~~~~ilVihD--Dldlp~G~irlk~------g-Gs~gGHNGLkSIi~~L~gt~~f~Rlr-IGIGrP~~~~~v~~yVL~ 167 (219)
.+ +.+||.| +.+.++|+++.-. . .-+...-|+..+++.|.+ ..+++. ||| .|. ++ +| =.
T Consensus 57 --~~-d~lIiVDA~~~g~~PGti~~~~~~~l~~~~~~s~H~~~l~~~L~~l~~--~~p~v~liGi-~p~---~~-~~-g~ 125 (159)
T 2e85_A 57 --RP-TRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKE--DIGEVIFLGI-QPD---IV-GF-YY 125 (159)
T ss_dssp --CC-SEEEEEEECCCSSCTTCEEECCHHHHHHTTCBCTTCCBHHHHHHHHHH--HHSEEEEEEE-CCS---CC-CT-TC
T ss_pred --CC-CEEEEEEeCCCCCCCCEEEEechhHcccccCCCCCcCCHHHHHHHHhC--CCCcEEEEEE-EEe---Ec-CC-CC
Confidence 22 4556667 4678999998521 1 223444599999988842 344543 577 343 22 22 12
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHh
Q 027742 168 KFNAIARERIDTALQEGVEVLKLLLS 193 (219)
Q Consensus 168 ~F~~~E~~~l~~~i~~a~~~l~~~i~ 193 (219)
..|++=+ +.++.+++.++.|+.
T Consensus 126 ~LS~~v~----~av~~a~~~l~~~~~ 147 (159)
T 2e85_A 126 PMTQPIK----DAVETVYQRLEGWEG 147 (159)
T ss_dssp CCCHHHH----HHHHHHHTTSTTCCT
T ss_pred CCCHHHH----HHHHHHHHHHHHHhc
Confidence 4554433 344455555555543
No 11
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=58.44 E-value=4 Score=31.03 Aligned_cols=41 Identities=29% Similarity=0.481 Sum_probs=30.2
Q ss_pred EEEeecCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCccEEEEeec
Q 027742 105 LVFHDDMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGIG 153 (219)
Q Consensus 105 lVihDDldlp~G~irlk--~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIG 153 (219)
+.|.+++++|...++++ +++|+||.| ...++.=.||+.=+.
T Consensus 2 l~i~~~i~I~~~dl~~~~~RssGpGGQn--------VNKv~SaV~L~~d~~ 44 (108)
T 2jva_A 2 LVISNNVHLPDAEIELTAIRAQGAGGQN--------VNKVSSAMHLRFDIN 44 (108)
T ss_dssp EECSSSCEECGGGEEEEECCCTTCSSSS--------SCCCCCCEEEEEETT
T ss_pred cccccccccChHHEEEEEEECCCCCCCC--------cCCCcceEEEEEEcc
Confidence 55778899999988887 688999987 223344578888664
No 12
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=51.14 E-value=3.3 Score=32.86 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=29.6
Q ss_pred EEEeecCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCccEEEEeec
Q 027742 105 LVFHDDMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGIG 153 (219)
Q Consensus 105 lVihDDldlp~G~irlk--~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIG 153 (219)
|.|.+++++|...+++. .++|+||.|= ..++.=.+|++=|.
T Consensus 2 ~~i~~~i~I~~~el~~~~~RssGpGGQnV--------NKv~SaV~L~~~~~ 44 (140)
T 4dh9_Y 2 IVISRHVAIPDGELEITAIRAQGAGGQHV--------NKTSTAIHLRFDIR 44 (140)
T ss_dssp CCCCSSSCCCTTCSEEEEECCCSSSSHHH--------HTTCCCEEEEECCS
T ss_pred ccccCCCccChHHeEEEEEECCCCCCCcc--------ccccceEEEEEecc
Confidence 45788999999988887 5888999662 22344577887554
No 13
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=50.81 E-value=11 Score=29.79 Aligned_cols=135 Identities=14% Similarity=0.039 Sum_probs=65.4
Q ss_pred CeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEECCeeEEEEeCCCcccccchhHHHHHHhc
Q 027742 18 PWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYY 97 (219)
Q Consensus 18 ~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~KP~TyMN~SG~aV~~~~~~~ 97 (219)
..||+|+|||=. .-== +|..++++|.+.+. .+-++--.| .|..+...+...
T Consensus 4 ~ilVlGiGN~L~----gDDG-~G~~v~~~L~~~~p--------------------~v~vid~Gt----~~~~l~~~l~~~ 54 (157)
T 3pu6_A 4 KKVLLCVGNELR----GDDG-VAIALGRLVEEQMP--------------------EWSVFFGYD----TPESEFGKLREL 54 (157)
T ss_dssp CEEEEEECCTTB----GGGG-HHHHHHHHHHHHCT--------------------TEEEEEEET----CGGGGHHHHHHH
T ss_pred CEEEEEECCccc----cccc-HHHHHHHHHHhhCC--------------------CeEEEECCC----CHHHHHHHHHhc
Confidence 368999999932 1223 99999999984321 011111111 233222223321
Q ss_pred CCCCCceEEEeec-CCCCCceEEEecCC------CCCCCCchhhHHHhhcCCCCccEEE-EeecCCCCCCCccccccCcC
Q 027742 98 KLPLNRVLVFHDD-MGLPCGVLRLRHNG------GHGGHNGLKSVMNNFRGNREFARLR-IGIGRPPGQMDPKAFLLQKF 169 (219)
Q Consensus 98 ki~~~~ilVihDD-ldlp~G~irlk~gG------s~gGHNGLkSIi~~L~gt~~f~Rlr-IGIGrP~~~~~v~~yVL~~F 169 (219)
.+ +.+||.|= .+.++|+++.-..- -+...-|+..+++.+.. ..+++. |||- |.. .+..+|- ...
T Consensus 55 --~~-d~lIiVDA~~g~~PGti~~~~~~~~~~~~~s~H~~~l~~~L~~l~~--~~p~v~liGie-p~~-~~~~~~g-~~L 126 (157)
T 3pu6_A 55 --AP-DVIVVADAMSGFKEGEIEFLDLSDERTYLYSTHNLPTPILISYLRG--ICSKTIFLGIS-VLL-ENVLHFS-EGL 126 (157)
T ss_dssp --CC-SEEEEEEEEEC----CEEEEETTSHHHHHC-----CCHHHHHHHHH--HCSEEEEEEEE-ECG-GGGSSCB-CSC
T ss_pred --CC-CEEEEEEecCCCCCcEEEEEchhHhcCCCCCCCCCCHHHHHHHHHc--cCCCEEEEEEE-Eee-cCCCCCC-CCC
Confidence 12 44445554 47789999865432 24455688888888742 235554 4664 321 1122332 245
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Q 027742 170 NAIARERIDTALQEGVEVLKLLLS 193 (219)
Q Consensus 170 ~~~E~~~l~~~i~~a~~~l~~~i~ 193 (219)
|++= ++.+++|++.+..|+.
T Consensus 127 S~~V----~~av~~a~~~i~~~~~ 146 (157)
T 3pu6_A 127 SQGA----SDSAFVALGRIKELDG 146 (157)
T ss_dssp CHHH----HHHHHHHHHHHHHHHH
T ss_pred CHHH----HHHHHHHHHHHHHHHh
Confidence 5544 4455666666666665
No 14
>2ea9_A JW2626, hypothetical protein YFJZ; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Escherichia coli} SCOP: d.110.8.1 PDB: 2jn7_A
Probab=50.47 E-value=16 Score=27.72 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=27.8
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027742 162 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 195 (219)
Q Consensus 162 ~~yVL~~F~~~E~~~l~~~i~~a~~~l~~~i~~~ 195 (219)
++++ +.||++|...|+++++...+-+|..+..|
T Consensus 34 Agi~-G~Fs~~~~~~Ld~aFP~~ikqlE~mL~sG 66 (105)
T 2ea9_A 34 ASIT-GKFSDAECPKLDVVFPHFISQIESMLTTG 66 (105)
T ss_dssp EEEE-SCCCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCee-EecCHHHHHHHHHHhHHHHHHHHHHhccC
Confidence 3444 89999999999999999999999887643
No 15
>2inw_A Putative structural protein; Q83JN9 X-RAY NESG SFR137, structural genomics, PSI-2, protei structure initiative; 1.50A {Shigella flexneri} SCOP: d.110.8.1 PDB: 2h28_A
Probab=49.53 E-value=20 Score=28.10 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=26.5
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHhcc
Q 027742 166 LQKFNAIARERIDTALQEGVEVLKLLLSKG 195 (219)
Q Consensus 166 L~~F~~~E~~~l~~~i~~a~~~l~~~i~~~ 195 (219)
-+.||++|...|+++++...+-+|..+..|
T Consensus 51 ~G~Fs~~~~~~Ld~aFP~~ikQlE~mL~sG 80 (133)
T 2inw_A 51 RGRFSDVDAYHLDQAFPLLMKQLELMLTGG 80 (133)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEecCHHHHHHHHHHhHHHHHHHHHHhccc
Confidence 389999999999999999999999887643
No 16
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=46.73 E-value=10 Score=24.06 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=25.1
Q ss_pred ecCCCCCCCcc-ccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 027742 152 IGRPPGQMDPK-AFLLQKFNAIARERIDTALQEGVEVLKLLL 192 (219)
Q Consensus 152 IGrP~~~~~v~-~yVL~~F~~~E~~~l~~~i~~a~~~l~~~i 192 (219)
.|||.+..... ..+--+++++|.+.|++....+---+..|+
T Consensus 4 ~~R~k~~~r~r~~~i~vRlt~eE~~~l~~~A~~~g~s~Seyi 45 (51)
T 2ba3_A 4 AVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDSGLTVSAYI 45 (51)
T ss_dssp TTBCTTCCCCCSEEEEEEECHHHHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCCCCCCcCceeEEEEECHHHHHHHHHHHHHhCCCHHHHH
Confidence 57886542333 344458999999999876655433333333
No 17
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=42.17 E-value=23 Score=31.32 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=29.2
Q ss_pred CCCcccccchhHHHHHHhcCCCCCceEEEeecCCCC
Q 027742 79 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLP 114 (219)
Q Consensus 79 P~TyMN~SG~aV~~~~~~~ki~~~~ilVihDDldlp 114 (219)
|...|=-|-+...+.+...+|..++.||||||-+.-
T Consensus 90 ~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~ 125 (327)
T 3utn_X 90 PYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNF 125 (327)
T ss_dssp SSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSS
T ss_pred CCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCc
Confidence 344566677788888999999999999999997754
No 18
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=35.38 E-value=43 Score=24.72 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=25.9
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 027742 163 AFLLQKFNAIARERIDTALQEGVEVLKLLLS 193 (219)
Q Consensus 163 ~yVL~~F~~~E~~~l~~~i~~a~~~l~~~i~ 193 (219)
+++++.|+++|.+.+..++.+..+.++.+.+
T Consensus 118 ~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 148 (149)
T 4hbl_A 118 SCLPQEFDTTEYDETKYVFEELEQTLKHLIE 148 (149)
T ss_dssp TTSCTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4488999999999999999988888876653
No 19
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=32.27 E-value=70 Score=25.36 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=24.4
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHh
Q 027742 166 LQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARH 202 (219)
Q Consensus 166 L~~F~~~E~~~l~~~i~~a~~~l~~~i~~~~~~amn~ 202 (219)
||.++++|++.|.+++.+..+ ++..-++-+.+..++
T Consensus 14 Ls~LteeEr~~Il~VL~Rd~~-l~~~EeeRi~kLk~~ 49 (153)
T 2zet_C 14 LSTLTDEEAEHVWAVVQRDFD-LRRREEERLQGLKGK 49 (153)
T ss_dssp CTTSCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHhHHH-HHHhHHHHHHHHHHH
Confidence 799999999999999988654 333333334444433
No 20
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=31.31 E-value=49 Score=26.59 Aligned_cols=40 Identities=8% Similarity=0.182 Sum_probs=30.7
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhhhc
Q 027742 166 LQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 205 (219)
Q Consensus 166 L~~F~~~E~~~l~~~i~~a~~~l~~~i~~~~~~amn~~n~ 205 (219)
|..|+|+-+..+.-.+-+-..++..+.+.+++.||+++..
T Consensus 83 l~~F~P~~QD~~A~~Li~~rgal~~i~~G~i~~a~~~la~ 122 (158)
T 1am7_A 83 LKDFSPKSQDAVALQQIKERGALPMIDRGDIRQAIDRCSN 122 (158)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTCHHHHHHTCHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHcCcHHHHHcCCHHHHHHHhcc
Confidence 6689999998875443334557888888999999998774
No 21
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=29.82 E-value=65 Score=23.61 Aligned_cols=30 Identities=10% Similarity=0.064 Sum_probs=22.8
Q ss_pred ccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 027742 163 AFLLQKFNAIARERIDTALQEGVEVLKLLL 192 (219)
Q Consensus 163 ~yVL~~F~~~E~~~l~~~i~~a~~~l~~~i 192 (219)
+-+++.++++|.+.+.+++.+..+.++.+.
T Consensus 119 ~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~ 148 (151)
T 3kp7_A 119 SDMTSDFDSKEIEKVRQVLEIIDYRIQSYT 148 (151)
T ss_dssp HHTTTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888877777766554
No 22
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=29.25 E-value=61 Score=23.36 Aligned_cols=32 Identities=9% Similarity=0.020 Sum_probs=24.5
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 027742 162 KAFLLQKFNAIARERIDTALQEGVEVLKLLLS 193 (219)
Q Consensus 162 ~~yVL~~F~~~E~~~l~~~i~~a~~~l~~~i~ 193 (219)
.+.+++.++++|.+.+.+++.+..+.++..++
T Consensus 108 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 139 (144)
T 1lj9_A 108 NQVALQGLSEVEISQLADYLVRMRKNVSEDWE 139 (144)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35677889999998888888887777765543
No 23
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=26.63 E-value=1.1e+02 Score=21.00 Aligned_cols=40 Identities=8% Similarity=0.131 Sum_probs=28.5
Q ss_pred CcCCHHHHHHHHHHHHHH-------HHHHHHHHhccHHHHHHhhhch
Q 027742 167 QKFNAIARERIDTALQEG-------VEVLKLLLSKGLTESARHFNTI 206 (219)
Q Consensus 167 ~~F~~~E~~~l~~~i~~a-------~~~l~~~i~~~~~~amn~~n~~ 206 (219)
+.+|.+|.+.|++++... .+.|-..+....+.+.++|+.-
T Consensus 9 ~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L 55 (72)
T 2cqq_A 9 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 579999999998887654 4444444556677787777753
No 24
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=26.38 E-value=44 Score=23.07 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=27.6
Q ss_pred chhHHHHHHhcCCCCCceEEEeecCCCCCce
Q 027742 87 GESTGPLAAYYKLPLNRVLVFHDDMGLPCGV 117 (219)
Q Consensus 87 G~aV~~~~~~~ki~~~~ilVihDDldlp~G~ 117 (219)
|..|+.+++.++++++.++|+.+.--+|...
T Consensus 20 g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 20 DGTYADLVRAVDLSPHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp TCSHHHHHHTTCCCSSCCCEECCCCCCCTTS
T ss_pred CCcHHHHHHHcCCCcceEEEEECCEECCHHH
Confidence 6789999999999999999999988788776
No 25
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=26.23 E-value=42 Score=25.58 Aligned_cols=32 Identities=13% Similarity=0.009 Sum_probs=23.0
Q ss_pred cccccCcCCHHHHHHHHHHHHHHHHHHHHHHh
Q 027742 162 KAFLLQKFNAIARERIDTALQEGVEVLKLLLS 193 (219)
Q Consensus 162 ~~yVL~~F~~~E~~~l~~~i~~a~~~l~~~i~ 193 (219)
.+-+++.|+++|++.+..++.+..+.++.+.+
T Consensus 133 ~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~~~ 164 (166)
T 3deu_A 133 RGEILAGISSEEIELLIKLIAKLEHNIMELHS 164 (166)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35567788888888888888887777765543
No 26
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=25.75 E-value=55 Score=21.76 Aligned_cols=39 Identities=26% Similarity=0.387 Sum_probs=17.3
Q ss_pred HHHhcCCCCCceEEEe------ecCC-----CCCc---eEEEecCCCCCCCCc
Q 027742 93 LAAYYKLPLNRVLVFH------DDMG-----LPCG---VLRLRHNGGHGGHNG 131 (219)
Q Consensus 93 ~~~~~ki~~~~ilVih------DDld-----lp~G---~irlk~gGs~gGHNG 131 (219)
+....++|+++.-++| ||.. +.-| .+-+|..|+.||+.|
T Consensus 33 i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ggg~~ 85 (85)
T 3mtn_B 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGGGGSG 85 (85)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC------
T ss_pred HHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCCCCCC
Confidence 4556788887765544 3322 2222 233466677777765
No 27
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=24.69 E-value=60 Score=20.13 Aligned_cols=30 Identities=20% Similarity=0.115 Sum_probs=18.6
Q ss_pred cCCCCCCCccccccCcCCHHHHHHHHHHHHH
Q 027742 153 GRPPGQMDPKAFLLQKFNAIARERIDTALQE 183 (219)
Q Consensus 153 GrP~~~~~v~~yVL~~F~~~E~~~l~~~i~~ 183 (219)
|||.... -..-+-=+++++..+.|+.....
T Consensus 1 GRP~~~~-~~~~i~vrl~~el~~~l~~~a~~ 30 (55)
T 2k9i_A 1 GRPYKLL-NGIKLGVYIPQEWHDRLMEIAKE 30 (55)
T ss_dssp CCCSSTT-CCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCCCCC-ccceEEEEcCHHHHHHHHHHHHH
Confidence 7885321 12233447888888888876544
No 28
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=23.97 E-value=42 Score=26.77 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.7
Q ss_pred chhHHHHHHhcCCCCCceEEEeec
Q 027742 87 GESTGPLAAYYKLPLNRVLVFHDD 110 (219)
Q Consensus 87 G~aV~~~~~~~ki~~~~ilVihDD 110 (219)
|.++..+++.++++++++++|=|.
T Consensus 202 ~~~l~~l~~~lgi~~~~~i~~GD~ 225 (274)
T 3fzq_A 202 GKAIKRLQERLGVTQKETICFGDG 225 (274)
T ss_dssp HHHHHHHHHHHTCCSTTEEEECCS
T ss_pred HHHHHHHHHHcCCCHHHEEEECCC
Confidence 677889999999999999999984
No 29
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=23.90 E-value=1.7e+02 Score=20.22 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=24.4
Q ss_pred cCcCCHHHHHHHHHHHHHH---HHHHHHHHhccHHHHHHhhhc
Q 027742 166 LQKFNAIARERIDTALQEG---VEVLKLLLSKGLTESARHFNT 205 (219)
Q Consensus 166 L~~F~~~E~~~l~~~i~~a---~~~l~~~i~~~~~~amn~~n~ 205 (219)
-++||+||-+.|-+++..- ...|...+...-..+.|+++.
T Consensus 23 k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~~ 65 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRL 65 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 4799999999887776552 222222224445566666664
No 30
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=23.29 E-value=42 Score=26.90 Aligned_cols=24 Identities=17% Similarity=0.458 Sum_probs=22.1
Q ss_pred chhHHHHHHhcCCCCCceEEEeec
Q 027742 87 GESTGPLAAYYKLPLNRVLVFHDD 110 (219)
Q Consensus 87 G~aV~~~~~~~ki~~~~ilVihDD 110 (219)
|.++..+++.++++++++++|=|.
T Consensus 196 ~~~l~~l~~~lgi~~~~~ia~GD~ 219 (268)
T 3r4c_A 196 ATGLSLFADYYRVKVSEIMACGDG 219 (268)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHcCCCHHHEEEECCc
Confidence 588999999999999999999995
No 31
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2
Probab=23.13 E-value=59 Score=29.69 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=57.5
Q ss_pred CCCCeEEEeecCcCCCCCCCcchHHHHHHHHHHHHHcCCCCCccccceEEEEEEE--CCeeEEEEeC----CCcccccch
Q 027742 15 VARPWLFVGLGNPGDKYKGTRHNQVGFEMIDAFAESQGISMNTVHCKATFGQGFV--GDAPVLLAKP----QTYMNLSGE 88 (219)
Q Consensus 15 ~~~~~LIvGLGNPG~~Y~~TRHN~vGf~vld~La~~~~~~~~~~k~~~~~~~~~~--~~~~v~L~KP----~TyMN~SG~ 88 (219)
.....|||||||.. -|--. .|-.+++.|. + ...-+. ++...+ .-..|.-+-| +|=||. ++
T Consensus 111 ~~~~iLVVGLGN~~----vTpDA-LGP~Vv~~l~----v--TrHl~~--~g~~~~~~~~~pVsAiaPGVmg~TGiEt-~E 176 (371)
T 1c8b_A 111 DDASCLVVGLGNLS----VTPDA-LGPKAVDNLL----I--TRHLFE--LQPESVQDGFRPVSAIVPGVMGMTGIET-SD 176 (371)
T ss_dssp TTCCEEEEECSCSS----SGGGC-HHHHHHTTCC----C--CHHHHH--HSCCSSCSSCCCEEEECSGGGCCCSSCH-HH
T ss_pred CCCcEEEEEcCCCC----cCccc-cCcceeeeee----E--Eeehhh--hCchhhccCCCceEEecCCccccccccH-HH
Confidence 35568999999963 57778 8888887653 1 110000 111001 1135666666 566776 56
Q ss_pred hHHHHHHhcCCCCCceEEEeecCCC----CCc-eEEEecCC
Q 027742 89 STGPLAAYYKLPLNRVLVFHDDMGL----PCG-VLRLRHNG 124 (219)
Q Consensus 89 aV~~~~~~~ki~~~~ilVihDDldl----p~G-~irlk~gG 124 (219)
.|+.+.+.++ .+++|.-|-|-. -+| +|.+...|
T Consensus 177 iI~gIv~k~k---Pd~VIAIDALAars~~Rl~~TIQIsdTG 214 (371)
T 1c8b_A 177 IIFGVVKKVN---PDFIIAIDALAARSIERVNATIQISDSG 214 (371)
T ss_dssp HHHHHHHHHC---CSEEEEEEEECCSSGGGSSSEEEEETTC
T ss_pred HHHHHHHhcC---CCEEEEEchhhcCcHhhcCCeEEECCCC
Confidence 7788888776 367888888654 356 78887666
No 32
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=23.12 E-value=51 Score=24.82 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=25.4
Q ss_pred cchhHHHHHHhcCCCCCceEEEeecC--CCC
Q 027742 86 SGESTGPLAAYYKLPLNRVLVFHDDM--GLP 114 (219)
Q Consensus 86 SG~aV~~~~~~~ki~~~~ilVihDDl--dlp 114 (219)
++.++..+++.++++++++++|=|.+ |+.
T Consensus 159 k~~~~~~~~~~lgi~~~~~i~iGD~~~~Di~ 189 (234)
T 3ddh_A 159 TEKEYLRLLSILQIAPSELLMVGNSFKSDIQ 189 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEEESCCCCCCH
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCcHHHhH
Confidence 68888999999999999999999986 554
No 33
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=21.51 E-value=47 Score=26.93 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=39.4
Q ss_pred cchhHHHHHHhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCC-CCCcccc
Q 027742 86 SGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPG-QMDPKAF 164 (219)
Q Consensus 86 SG~aV~~~~~~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~-~~~v~~y 164 (219)
-|.++..+++.++++++++++|=|. .|.+.-+. .. | +.+..|.... -...++|
T Consensus 203 K~~~l~~l~~~lgi~~~~~i~~GD~------------------~NDi~m~~-~a-g------~~vam~na~~~~k~~Ad~ 256 (290)
T 3dnp_A 203 KEAGLALVASELGLSMDDVVAIGHQ------------------YDDLPMIE-LA-G------LGVAMGNAVPEIKRKADW 256 (290)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECS------------------GGGHHHHH-HS-S------EEEECTTSCHHHHHHSSE
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCc------------------hhhHHHHH-hc-C------CEEEecCCcHHHHHhcCE
Confidence 3678899999999999999999994 56655432 22 2 4555554221 1245799
Q ss_pred ccCcCC
Q 027742 165 LLQKFN 170 (219)
Q Consensus 165 VL~~F~ 170 (219)
|.....
T Consensus 257 v~~s~~ 262 (290)
T 3dnp_A 257 VTRSND 262 (290)
T ss_dssp ECCCTT
T ss_pred ECCCCC
Confidence 986543
No 34
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=21.47 E-value=46 Score=25.22 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=22.6
Q ss_pred cCCCCCceEEEe--cCCCCCCCCchhhHHHhhcCCCCccEEEEee
Q 027742 110 DMGLPCGVLRLR--HNGGHGGHNGLKSVMNNFRGNREFARLRIGI 152 (219)
Q Consensus 110 Dldlp~G~irlk--~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGI 152 (219)
|+++|...++++ +.+|+||+| ...++.=.+|++=|
T Consensus 14 ~i~I~~~dl~~~~~RssGpGGQn--------VNKv~SaV~Lrf~i 50 (112)
T 1j26_A 14 SSYIPLDRLSISYCRSSGPGGQN--------VNKVNSKAEVRFHL 50 (112)
T ss_dssp CCCCCTTTSEEEEECCCCSSSSC--------CSSCCCEEEEEEEG
T ss_pred EEecChHHeEEEEEECCCCCCCC--------ccCCcceEEEEEec
Confidence 455666666655 788999987 22334456777655
No 35
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=21.37 E-value=1e+02 Score=23.82 Aligned_cols=36 Identities=6% Similarity=0.160 Sum_probs=22.9
Q ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHh
Q 027742 166 LQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARH 202 (219)
Q Consensus 166 L~~F~~~E~~~l~~~i~~a~~~l~~~i~~~~~~amn~ 202 (219)
||..+++|++.|.+++.+..+ ++..-++-+.+..++
T Consensus 7 ls~LteeE~~~Il~Vl~Rd~~-l~~~E~~ri~kL~~~ 42 (134)
T 1zbd_B 7 QEELTDEEKEIINRVIARAEK-METMEQERIGRLVDR 42 (134)
T ss_dssp -CCCCSSHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhHHH-HHHhHHHHHHHHHHH
Confidence 577899999999999888665 333333334444333
No 36
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=21.18 E-value=50 Score=27.04 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.9
Q ss_pred chhHHHHHHhcCCCCCceEEEeec
Q 027742 87 GESTGPLAAYYKLPLNRVLVFHDD 110 (219)
Q Consensus 87 G~aV~~~~~~~ki~~~~ilVihDD 110 (219)
|.++..+++.++++++++++|=|.
T Consensus 213 ~~~l~~l~~~lgi~~~e~ia~GD~ 236 (283)
T 3dao_A 213 WTALSYLIDRFDLLPDEVCCFGDN 236 (283)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHhCCCHHHEEEECCC
Confidence 668999999999999999999994
No 37
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=21.10 E-value=44 Score=26.94 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=20.7
Q ss_pred cchhHHHHHHhcCCCCCceEEEeec
Q 027742 86 SGESTGPLAAYYKLPLNRVLVFHDD 110 (219)
Q Consensus 86 SG~aV~~~~~~~ki~~~~ilVihDD 110 (219)
-|.++..+++.++++++++++|=|.
T Consensus 198 K~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 3mpo_A 198 KGGTLSELVDQLGLTADDVMTLGDQ 222 (279)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEC--C
T ss_pred hHHHHHHHHHHcCCCHHHEEEECCc
Confidence 4788999999999999999999984
No 38
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=20.96 E-value=68 Score=25.36 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=23.9
Q ss_pred CCcccccchhHHHHHHhcCCCCCceEEEeecCCCC
Q 027742 80 QTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLP 114 (219)
Q Consensus 80 ~TyMN~SG~aV~~~~~~~ki~~~~ilVihDDldlp 114 (219)
.+|+|..+.++.++++.+. ++++|||.+=.-|
T Consensus 27 ~~~v~Rgk~sl~~L~~~~~---~~~iVV~e~rg~P 58 (156)
T 1w94_A 27 WRYINRGKMSLRDVLIEAR---GPVAVVSERHGNP 58 (156)
T ss_dssp CEECCCTTCCHHHHHHHHS---SCEEEEEEETTEE
T ss_pred CEEEeeCCcCHHHHHHhcC---CCEEEEEcCCCCC
Confidence 4688998889988887764 3488888877443
No 39
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=20.92 E-value=46 Score=26.85 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.3
Q ss_pred chhHHHHHHhcCCCCCceEEEeec
Q 027742 87 GESTGPLAAYYKLPLNRVLVFHDD 110 (219)
Q Consensus 87 G~aV~~~~~~~ki~~~~ilVihDD 110 (219)
|.++..+++.++++++++++|=|.
T Consensus 199 ~~~l~~l~~~lgi~~~~~i~~GD~ 222 (279)
T 4dw8_A 199 ALSLSVLLENIGMTREEVIAIGDG 222 (279)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECS
T ss_pred HHHHHHHHHHcCCCHHHEEEECCC
Confidence 888999999999999999999994
No 40
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=20.61 E-value=50 Score=27.01 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=22.2
Q ss_pred chhHHHHHHhcCCCCCceEEEeec
Q 027742 87 GESTGPLAAYYKLPLNRVLVFHDD 110 (219)
Q Consensus 87 G~aV~~~~~~~ki~~~~ilVihDD 110 (219)
|.++..+++.++++++++++|=|.
T Consensus 211 ~~al~~l~~~lgi~~~~~ia~GD~ 234 (285)
T 3pgv_A 211 GHALEAVAKMLGYTLSDCIAFGDG 234 (285)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECS
T ss_pred HHHHHHHHHHhCCCHHHEEEECCc
Confidence 788999999999999999999995
No 41
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=20.60 E-value=43 Score=26.81 Aligned_cols=58 Identities=14% Similarity=0.229 Sum_probs=38.6
Q ss_pred chhHHHHHHhcCCCCCceEEEeecCCCCCceEEEecCCCCCCCCchhhHHHhhcCCCCccEEEEeecCCCCC-CCccccc
Q 027742 87 GESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQ-MDPKAFL 165 (219)
Q Consensus 87 G~aV~~~~~~~ki~~~~ilVihDDldlp~G~irlk~gGs~gGHNGLkSIi~~L~gt~~f~RlrIGIGrP~~~-~~v~~yV 165 (219)
|.++..+++.+++++++++++=|. .|.+.-+.. - | +.+-+|..... ...++||
T Consensus 185 ~~~l~~l~~~lgi~~~~~ia~GDs------------------~NDi~ml~~-a-g------~~vam~na~~~~k~~A~~v 238 (258)
T 2pq0_A 185 AEGIRMMIEKLGIDKKDVYAFGDG------------------LNDIEMLSF-V-G------TGVAMGNAHEEVKRVADFV 238 (258)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCS------------------GGGHHHHHH-S-S------EEEEETTCCHHHHHTCSEE
T ss_pred HHHHHHHHHHhCCCHHHEEEECCc------------------HHhHHHHHh-C-C------cEEEeCCCcHHHHHhCCEE
Confidence 667899999999999999999984 677655432 2 2 34445542211 2357999
Q ss_pred cCcCC
Q 027742 166 LQKFN 170 (219)
Q Consensus 166 L~~F~ 170 (219)
....+
T Consensus 239 ~~~~~ 243 (258)
T 2pq0_A 239 TKPVD 243 (258)
T ss_dssp ECCGG
T ss_pred eCCCC
Confidence 86543
No 42
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=20.34 E-value=67 Score=23.06 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.0
Q ss_pred HHHhcCCCCCceEEEeecCCCCCc
Q 027742 93 LAAYYKLPLNRVLVFHDDMGLPCG 116 (219)
Q Consensus 93 ~~~~~ki~~~~ilVihDDldlp~G 116 (219)
+.+..+++++++.|+.+|++ .+|
T Consensus 84 l~~~lgi~~~~v~I~~~e~~-~wg 106 (112)
T 3b64_A 84 ITKECGIVADRIFVLYFSPL-HCG 106 (112)
T ss_dssp HHHHHCCCGGGEEEEEECCS-CCE
T ss_pred HHHHhCcCcceEEEEEEEhh-Hee
Confidence 34567999999999999998 665
Done!