BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027743
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VY91|RR6_ARATH 30S ribosomal protein S6 alpha, chloroplastic OS=Arabidopsis
thaliana GN=RPS6 PE=1 SV=1
Length = 207
Score = 282 bits (721), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 138/194 (71%), Positives = 157/194 (80%), Gaps = 3/194 (1%)
Query: 23 LSQLPSSPLFSFARSLKTFRTNAKSLLLHKKNSNSVSLTVKAQTLDFSGSFFEGGGFGSD 82
L + S PL SF+ SL+ F + +K + + + VK+Q LDFSG+FFEGG FGSD
Sbjct: 15 LPNVSSQPLLSFSHSLRPFISKSKPMCASIQKRDGSQFVVKSQALDFSGTFFEGG-FGSD 73
Query: 83 DDPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVA 142
DDPTS P G +TA+EDK EPQCPPGLRQYETM VLRPDMSEDERL LTQKYEELLVA
Sbjct: 74 DDPTS--PSGSGVSTALEDKPEPQCPPGLRQYETMAVLRPDMSEDERLGLTQKYEELLVA 131
Query: 143 GGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKADD 202
GGGMYVEVFNRGVIPLAYSIRK+NKAGE+NTYLDGIYLLFTYFTKPESI LE + ADD
Sbjct: 132 GGGMYVEVFNRGVIPLAYSIRKKNKAGETNTYLDGIYLLFTYFTKPESIVPLETVLTADD 191
Query: 203 DVIRSSSFKVRKQK 216
D+IRSSSFK++K+K
Sbjct: 192 DIIRSSSFKIKKRK 205
>sp|P82403|RR6_SPIOL 30S ribosomal protein S6 alpha, chloroplastic (Fragment)
OS=Spinacia oleracea GN=RPS6 PE=1 SV=2
Length = 168
Score = 223 bits (568), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 119/155 (76%), Positives = 131/155 (84%), Gaps = 4/155 (2%)
Query: 62 VKAQTLDFSGSFFEGGGFGSDDDPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVLR 121
VKA LDFSGSFFEGG G D+DP S PP + A+E+K EPQCPPGLRQYETM VLR
Sbjct: 17 VKAIALDFSGSFFEGGFGGLDEDPPSTPPAGL----AVEEKPEPQCPPGLRQYETMAVLR 72
Query: 122 PDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLL 181
PDM+EDERL LTQKYEELLVAGG MYVEVFNRGVIPLAYSI+++NKAGE+N YLDGIYLL
Sbjct: 73 PDMTEDERLTLTQKYEELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLL 132
Query: 182 FTYFTKPESIEALERTMKADDDVIRSSSFKVRKQK 216
FTYFTKPESI LE + DDDVIRSSSFK+RK+K
Sbjct: 133 FTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRK 167
>sp|A5GX14|RS6_SYNR3 30S ribosomal protein S6 OS=Synechococcus sp. (strain RCC307)
GN=rpsF PE=3 SV=1
Length = 135
Score = 63.9 bits (154), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD++E+E + KY +L+V GG ++ RG LAY+I K
Sbjct: 7 YETMYILRPDIAEEEVESHANKYRDLVVEAGGEVIDSQMRGKRRLAYNIGK--------- 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRKQ 215
+ +GIY+ Y + + LE+ M+ +DVIR + K Q
Sbjct: 58 HREGIYIQLNYSGDGKQVGPLEKAMRLSEDVIRYLTVKYEGQ 99
>sp|Q3MBE2|RS6_ANAVT 30S ribosomal protein S6 OS=Anabaena variabilis (strain ATCC 29413
/ PCC 7937) GN=rpsF PE=3 SV=1
Length = 108
Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YET+ +LRPD+++++ KY+ LL G +EV NRG LAY I+K+
Sbjct: 5 YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDIEVQNRGKRRLAYEIKKQR------- 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRKQKQK 218
DG Y+ F Y ++I LER M+ ++VIR + K K+K
Sbjct: 58 --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVKQEVTKEK 100
>sp|Q8YMX2|RS6_NOSS1 30S ribosomal protein S6 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=rpsF PE=3 SV=1
Length = 108
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YET+ +LRPD+++++ KY+ LL G +EV NRG LAY I+K+
Sbjct: 5 YETLYILRPDLTDEQVELAIAKYQNLLQEQGATDLEVQNRGKRRLAYEIKKQR------- 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRKQKQK 218
DG Y+ F Y ++I LER M+ ++VIR + K K+K
Sbjct: 58 --DGFYVQFNYNAPGKAIAILERAMRLSEEVIRYLTVKQEVTKEK 100
>sp|Q1XDC8|RR6_PORYE 30S ribosomal protein S6, chloroplastic OS=Porphyra yezoensis
GN=rps6 PE=3 SV=1
Length = 109
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 9/108 (8%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
L YET+ +L+ D++ED+ L++ Y+ +L GG + + +RG L+Y+I
Sbjct: 9 LNCYETVYILKSDLNEDKTLSIINDYKSMLTNGGAKNIVLQHRGRRHLSYTI-------- 60
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRKQKQK 218
N Y DGIY+ Y + +++ E++++ DD++IR + K ++ +K
Sbjct: 61 -NDYHDGIYVQVNYEGNGQLVKSFEKSLRFDDNIIRYLTNKQKRNIKK 107
>sp|Q2JKZ9|RS6_SYNJB 30S ribosomal protein S6 OS=Synechococcus sp. (strain
JA-2-3B'a(2-13)) GN=rpsF PE=3 SV=1
Length = 96
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 10/102 (9%)
Query: 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAG-E 170
R YETM+++RPD+S++ L E +L G +VE+ NRG KR AG E
Sbjct: 3 RAYETMLIVRPDLSDEPLEQLLSSQEAILRENGVTHVEITNRG---------KRRFAGFE 53
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKV 212
+ +G+Y+ F Y +P ++ A E+ ++ ++ V+R + +V
Sbjct: 54 MKKFKEGLYIQFNYEAEPNAVAAWEKNLRINESVLRHMTLRV 95
>sp|Q10XV0|RS6_TRIEI 30S ribosomal protein S6 OS=Trichodesmium erythraeum (strain
IMS101) GN=rpsF PE=3 SV=1
Length = 117
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPDM+E++ KY+ +L G +++ +RG + LAY I N
Sbjct: 6 YETMYILRPDMTEEKVEQAITKYKSMLEEQGAYDIKIQHRGKLRLAYEI---------NN 56
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+GIY+ Y P I LER M+ ++VIR + K
Sbjct: 57 QREGIYIQMNYQGPPTQIAILERAMRLSEEVIRYLTVK 94
>sp|P73636|RS6_SYNY3 30S ribosomal protein S6 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rpsF PE=3 SV=1
Length = 113
Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YE M++LRPD++E+ KY+E L V V G LAY IR+ N
Sbjct: 6 YELMVILRPDLNEERVSQEVTKYQEFLTNNAAEEVSVKVWGKRRLAYQIRRFN------- 58
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKV 212
DGIY+LF + + + I +ER M+ +D+V+R S K+
Sbjct: 59 --DGIYVLFNFNGEGQQIALIERDMRLNDNVMRFLSIKL 95
>sp|Q8EKV4|RS6_OCEIH 30S ribosomal protein S6 OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rpsF PE=3
SV=1
Length = 95
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+R+YE M ++RPD+ E+ + AL +++ +L G +V +G LAY I
Sbjct: 1 MRKYEIMYIIRPDIEEEAQTALIERFNTILTDNGAEIDKVDEKGKRRLAYEI-------- 52
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
N Y DG Y++ + E+I +R K +DD+IR + K
Sbjct: 53 -NDYRDGYYVIINFRGSEEAINEFDRLAKFNDDIIRHMAIK 92
>sp|Q7V9F9|RS6_PROMA 30S ribosomal protein S6 OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=rpsF PE=3 SV=1
Length = 210
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD+ EDE +KY E+L ++ RG LAY+I K
Sbjct: 7 YETMYILRPDIPEDEVEGHLKKYSEVLEKAKAKIIDNQMRGKRRLAYTIGK--------- 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIR 206
+ +GIY+ ++ + +E LER+M+ +DVIR
Sbjct: 58 HKEGIYVQLSHTGNGKHVETLERSMRLSEDVIR 90
>sp|Q7UZG1|RS6_PROMP 30S ribosomal protein S6 OS=Prochlorococcus marinus subsp. pastoris
(strain CCMP1986 / MED4) GN=rpsF PE=3 SV=1
Length = 154
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD++EDE KY +LL GG ++ RG LAY I K
Sbjct: 7 YETMYILRPDIAEDEVTNHIDKYNKLLEESGGKILDSQMRGKRRLAYQIAK--------- 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIR 206
+ +GIY+ ++ + I +E+ M+ +DVIR
Sbjct: 58 HREGIYVQLSHQGDGQHIFKIEKAMRLSEDVIR 90
>sp|B2J6T8|RS6_NOSP7 30S ribosomal protein S6 OS=Nostoc punctiforme (strain ATCC 29133 /
PCC 73102) GN=rpsF PE=3 SV=1
Length = 116
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD+ +++ KY+ LL G +++ NRG LAY I+K
Sbjct: 5 YETMYILRPDLGDEQAEQAITKYQNLLRDQGAEDIQIQNRGKRRLAYEIKK--------- 55
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+ DGIY+ Y +I ER M+ ++VIR + K
Sbjct: 56 HRDGIYIQLNYTAPATAIAPFERAMRLSEEVIRYLTIK 93
>sp|Q317T5|RS6_PROM9 30S ribosomal protein S6 OS=Prochlorococcus marinus (strain MIT
9312) GN=rpsF PE=3 SV=1
Length = 152
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD++EDE KY +LL GG ++ RG LAY I K
Sbjct: 7 YETMYILRPDIAEDEVTNHIDKYNKLLEEFGGTILDSQMRGKRRLAYQIAK--------- 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+ +GIY+ ++ + I +E+ M+ +DVIR + K
Sbjct: 58 HREGIYVQLSHQGDGQHIFKIEKAMRISEDVIRYMTVK 95
>sp|Q5KU69|RS6_GEOKA 30S ribosomal protein S6 OS=Geobacillus kaustophilus (strain
HTA426) GN=rpsF PE=3 SV=1
Length = 95
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+R+YE M ++RP+M ++ R AL +++ +L G V + G LAY I+K
Sbjct: 1 MRKYEIMYIIRPNMDDEARQALVERFNNVLKENGAEITNVTDWGKRRLAYEIQK------ 54
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
Y DG Y++ ++P++++ +R + +D+IR K
Sbjct: 55 ---YRDGYYMIVNVVSEPKAVQEFDRLARISEDIIRHIVVK 92
>sp|C5D9X6|RS6_GEOSW 30S ribosomal protein S6 OS=Geobacillus sp. (strain WCH70) GN=rpsF
PE=3 SV=1
Length = 95
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+R+YE M ++RP++ ++ R A+ ++ +L G V + G LAY I+K
Sbjct: 1 MRKYEIMYIIRPNLDDEARQAVVDRFNNILKENGAEITNVTDWGKRRLAYEIKK------ 54
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
Y DG Y++ ++P++++ +R + DD+IR K
Sbjct: 55 ---YRDGHYMILNVVSEPKAVQEFDRLARISDDIIRHIVVK 92
>sp|Q6B922|RR6_GRATL 30S ribosomal protein S6, chloroplastic OS=Gracilaria
tenuistipitata var. liui GN=rps6 PE=3 SV=1
Length = 103
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 110 GLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAG 169
L +YET+ +L+P+++E E L L +Y+ L+ GG + V ++G L Y+I+
Sbjct: 2 NLNKYETIYILQPNITESENLILINEYKALIKKYGGNNIVVQHKGRRHLNYNIK------ 55
Query: 170 ESNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+Y DGIY+ Y + LE+ M+ VIR + K
Sbjct: 56 ---SYYDGIYVQINYTASSNLVRILEKAMRLSQHVIRYMTIK 94
>sp|Q2JQZ7|RS6_SYNJA 30S ribosomal protein S6 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rpsF PE=3 SV=1
Length = 96
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 10/102 (9%)
Query: 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAG-E 170
R YETM+++RPD+S++ L + E LL G +E+ NRG KR AG E
Sbjct: 3 RAYETMLIVRPDLSDEPLQQLLTEQESLLRENGATGLEITNRG---------KRRFAGFE 53
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKV 212
+ +G+Y+ F Y +P ++ E+ ++ ++ ++R + +V
Sbjct: 54 MKKFKEGLYIQFNYEAEPRTVATWEKNLRINESILRYMTLRV 95
>sp|P51359|RR6_PORPU 30S ribosomal protein S6, chloroplastic OS=Porphyra purpurea
GN=rps6 PE=3 SV=1
Length = 112
Score = 58.2 bits (139), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 9/96 (9%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
L YET+ +++ D++ED L + +Y+ +L GG + + +RG L+YSI+
Sbjct: 12 LNWYETVYLIKSDLNEDRTLCIINEYKSMLTNGGAKNIILQHRGRRHLSYSIK------- 64
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIR 206
Y DGIY+ Y + +++ E++++ D+++IR
Sbjct: 65 --DYRDGIYVQVNYEGNGKLVQSFEKSLRFDENIIR 98
>sp|Q3AVM1|RS6_SYNS9 30S ribosomal protein S6 OS=Synechococcus sp. (strain CC9902)
GN=rpsF PE=3 SV=1
Length = 126
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD+ E+E + KY +++V G ++ RG LAY I K
Sbjct: 7 YETMYILRPDIPEEEVESHVTKYRDMIVEAGAEVLDNQMRGKRRLAYPIAKHK------- 59
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+GIY+ ++ + +E LE+ M+ +DVIR + K
Sbjct: 60 --EGIYVQLSHNGDGQQVEVLEKAMRISEDVIRYLTVK 95
>sp|Q2RM72|RS6_MOOTA 30S ribosomal protein S6 OS=Moorella thermoacetica (strain ATCC
39073) GN=rpsF PE=3 SV=1
Length = 98
Score = 57.8 bits (138), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+R YE + V+RPD+ + A+ +K+ +L+ GG V G +AY +RK
Sbjct: 1 MRNYEVVFVIRPDLEAEATTAVVEKFTQLITDQGGQVTRVDQWGKKRMAYEVRK------ 54
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIR 206
Y +G Y+L + P + LER +K DDVIR
Sbjct: 55 ---YREGYYVLVEFKGTPAVAQELERVLKISDDVIR 87
>sp|Q8R6M1|RS6_THETN 30S ribosomal protein S6 OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=rpsF PE=3 SV=1
Length = 95
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+R YETM VL PD++E+ER L ++++ L+V GG G LAY I+K++
Sbjct: 1 MRSYETMYVLSPDLNEEERKGLIERFKNLIVERGGEITNFDEWGKRKLAYPIQKKS---- 56
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIR 206
+G Y+L + + P+ LER + D V+R
Sbjct: 57 -----EGYYVLMNFNSSPDVSRELERVYRITDGVLR 87
>sp|B1XP08|RS6_SYNP2 30S ribosomal protein S6 OS=Synechococcus sp. (strain ATCC 27264 /
PCC 7002 / PR-6) GN=rpsF PE=3 SV=1
Length = 115
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YE M +LRPD+SE++ ++ KY+ +L G ++V RG LAY I+ N
Sbjct: 5 YEMMYILRPDLSEEQVQEVSSKYKTMLQDSGASDLQVQVRGKRHLAYPIQNFN------- 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKV 212
DGIY+ Y I+A+ER M+ + VIR + K+
Sbjct: 58 --DGIYIQVNYKADGSQIKAVERDMRLGEMVIRYLTMKL 94
>sp|A9BDR2|RS6_PROM4 30S ribosomal protein S6 OS=Prochlorococcus marinus (strain MIT
9211) GN=rpsF PE=3 SV=1
Length = 172
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRP + EDE + +KY E+L + GG ++ RG LAY I K
Sbjct: 7 YETMYILRPTIPEDEVDSHLKKYTEILESAGGEVLDSQMRGKRRLAYPIGK--------- 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+ +GIY+ ++ + I LE+ M+ +DVIR + K
Sbjct: 58 HKEGIYVQLSHQGDGQHIAVLEKAMRLTEDVIRYLTVK 95
>sp|Q8YAR9|RS6_LISMO 30S ribosomal protein S6 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=rpsF PE=3 SV=1
Length = 97
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGES 171
R+YE M ++RP++ EDE+ A+ ++++ +L G +E G LAY I
Sbjct: 3 RKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEWGKRRLAYEI--------- 53
Query: 172 NTYLDGIYLLFTYFT-KPESIEALERTMKADDDVIRSSSFK 211
N Y DG Y + K +SI +R K DD+IR K
Sbjct: 54 NDYRDGFYHIVKLNADKADSINEFDRLAKISDDIIRHMVIK 94
>sp|B8DAM2|RS6_LISMH 30S ribosomal protein S6 OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=rpsF PE=3 SV=1
Length = 97
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGES 171
R+YE M ++RP++ EDE+ A+ ++++ +L G +E G LAY I
Sbjct: 3 RKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEWGKRRLAYEI--------- 53
Query: 172 NTYLDGIYLLFTYFT-KPESIEALERTMKADDDVIRSSSFK 211
N Y DG Y + K +SI +R K DD+IR K
Sbjct: 54 NDYRDGFYHIVKLNADKADSINEFDRLAKISDDIIRHMVIK 94
>sp|Q725C0|RS6_LISMF 30S ribosomal protein S6 OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=rpsF PE=3 SV=1
Length = 97
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGES 171
R+YE M ++RP++ EDE+ A+ ++++ +L G +E G LAY I
Sbjct: 3 RKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEWGKRRLAYEI--------- 53
Query: 172 NTYLDGIYLLFTYFT-KPESIEALERTMKADDDVIRSSSFK 211
N Y DG Y + K +SI +R K DD+IR K
Sbjct: 54 NDYRDGFYHIVKLNADKADSINEFDRLAKISDDIIRHMVIK 94
>sp|C1KV85|RS6_LISMC 30S ribosomal protein S6 OS=Listeria monocytogenes serotype 4b
(strain CLIP80459) GN=rpsF PE=3 SV=1
Length = 97
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGES 171
R+YE M ++RP++ EDE+ A+ ++++ +L G +E G LAY I
Sbjct: 3 RKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEWGKRRLAYEI--------- 53
Query: 172 NTYLDGIYLLFTYFT-KPESIEALERTMKADDDVIRSSSFK 211
N Y DG Y + K +SI +R K DD+IR K
Sbjct: 54 NDYRDGFYHIVKLNADKADSINEFDRLAKISDDIIRHMVIK 94
>sp|Q65CP3|RS6_BACLD 30S ribosomal protein S6 OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=rpsF PE=3 SV=1
Length = 95
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+R+YE M ++RPD+ E+ + A+ +++ +L G E + G LAY I
Sbjct: 1 MRKYEIMYIIRPDVDEESKKAVVERFNNILTTNGAEITETKDWGKRRLAYEI-------- 52
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
N + DG Y + E+++ +R K DD+IR K
Sbjct: 53 -NDFRDGFYQILNVQAGAEAVQEFDRLAKISDDIIRHIVVK 92
>sp|A7GVN7|RS6_BACCN 30S ribosomal protein S6 OS=Bacillus cereus subsp. cytotoxis
(strain NVH 391-98) GN=rpsF PE=3 SV=1
Length = 95
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+++YE M ++RP+M E+ + AL +++ +L G + G LAY I
Sbjct: 1 MKKYEIMYIIRPNMEEEAQKALVERFANVLTNNGAEIINTKEWGKRRLAYEI-------- 52
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
N DG Y++ + PE+++ +R K ++D+IR K
Sbjct: 53 -NDLRDGFYMILNVNSNPEAVKEFDRLAKINEDIIRHIVVK 92
>sp|A5GPS8|RS6_SYNPW 30S ribosomal protein S6 OS=Synechococcus sp. (strain WH7803)
GN=rpsF PE=3 SV=1
Length = 123
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD+ E+E + KY ++LV G ++ RG LAY I K
Sbjct: 7 YETMYILRPDIPEEEVESHLTKYRDILVEAGADVLDNQMRGKRRLAYPIAKHK------- 59
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+GIY+ ++ + + LE+ M+ +DVIR + K
Sbjct: 60 --EGIYVQLSHNGDGQQVAVLEKVMRLSEDVIRYLTVK 95
>sp|A0AEM1|RS6_LISW6 30S ribosomal protein S6 OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=rpsF PE=3 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGES 171
R+YE M ++RP++ EDE+ A+ ++++ +L G +E G LAY I
Sbjct: 3 RKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEWGKRRLAYEI--------- 53
Query: 172 NTYLDGIYLLFTYFT-KPESIEALERTMKADDDVIRSSSFK 211
N Y DG Y + K +SI +R K DD++R K
Sbjct: 54 NDYRDGFYHIVKLNADKADSINEFDRLAKISDDIVRHMVIK 94
>sp|Q92FR6|RS6_LISIN 30S ribosomal protein S6 OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=rpsF PE=3 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 10/101 (9%)
Query: 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGES 171
R+YE M ++RP++ EDE+ A+ ++++ +L G +E G LAY I
Sbjct: 3 RKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEWGKRRLAYEI--------- 53
Query: 172 NTYLDGIYLLFTYFT-KPESIEALERTMKADDDVIRSSSFK 211
N Y DG Y + K +SI +R K DD++R K
Sbjct: 54 NDYRDGFYHIVKLNADKADSINEFDRLAKISDDIVRHMVIK 94
>sp|Q0ATX6|RS6_SYNWW 30S ribosomal protein S6 OS=Syntrophomonas wolfei subsp. wolfei
(strain Goettingen) GN=rpsF PE=3 SV=1
Length = 97
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 57/98 (58%), Gaps = 10/98 (10%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFN-RGVIPLAYSIRKRNKAG 169
+R YE M VLRPD+ E++ L ++ ++++ GG ++ + G LAY+I
Sbjct: 1 MRTYEMMFVLRPDLEEEQVLETKERLQKIIADFGGEFINAADGWGKKRLAYAI------- 53
Query: 170 ESNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRS 207
+ Y++GIY L+ + KPE+++ L+R +K ++ +R
Sbjct: 54 --DDYVEGIYSLWYFKGKPETVDELDRIIKISENFLRH 89
>sp|C0ZA47|RS6_BREBN 30S ribosomal protein S6 OS=Brevibacillus brevis (strain 47 / JCM
6285 / NBRC 100599) GN=rpsF PE=3 SV=1
Length = 95
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+RQYE M VLRPD+ E++ + +Y +++ GG ++ G LAY I
Sbjct: 1 MRQYEVMYVLRPDLEEEKVKSNVARYSDVVTNYGGEISKLQEMGKRRLAYEI-------- 52
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIR 206
N + +G Y+L + +++ ER MK +DDVIR
Sbjct: 53 -NKFREGYYVLMNFKANSDAVAEAERLMKINDDVIR 87
>sp|Q7U3C1|RS6_SYNPX 30S ribosomal protein S6 OS=Synechococcus sp. (strain WH8102)
GN=rpsF PE=3 SV=1
Length = 127
Score = 55.1 bits (131), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD+ E+E + KY ++LV G ++ RG LAY I K
Sbjct: 7 YETMYILRPDIPEEEVESHLTKYRDMLVEAGADVLDNQMRGKRRLAYPIDKHK------- 59
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+GIY+ ++ + + LE+ M+ +DVIR + K
Sbjct: 60 --EGIYVQLSHNGDGQQVAVLEKAMRLSEDVIRYLTVK 95
>sp|Q3AG80|RS6_SYNSC 30S ribosomal protein S6 OS=Synechococcus sp. (strain CC9605)
GN=rpsF PE=3 SV=1
Length = 124
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD+ E+E + KY ++LV G ++ RG LAY I K
Sbjct: 7 YETMYILRPDIPEEEVESHLTKYRDMLVEAGAEVLDNQMRGKRRLAYPIAKHK------- 59
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+GIY+ ++ + + LE+ M+ +DVIR + K
Sbjct: 60 --EGIYVQLSHNGDGQHVAVLEKAMRLSEDVIRYLTVK 95
>sp|A1AM18|RS6_PELPD 30S ribosomal protein S6 OS=Pelobacter propionicus (strain DSM
2379) GN=rpsF PE=3 SV=1
Length = 129
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+R+YET+ +L+PD+SED+ + K ++++ + G + + + G+ LAY I NK
Sbjct: 1 MRKYETIYILQPDLSEDDIKVVADKVQDVITSYKGDFQRLEDWGIRKLAYPI---NKCAR 57
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRKQKQK 218
G YL Y E I LER ++ D+ V+R S + Q +K
Sbjct: 58 ------GRYLYLRYDGGREMIAELERRLRLDEKVLRFQSVNITNQPEK 99
>sp|B1WU11|RS6_CYAA5 30S ribosomal protein S6 OS=Cyanothece sp. (strain ATCC 51142)
GN=rpsF PE=3 SV=1
Length = 119
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGES 171
+ YE + +LRPD+SE++ KY+E L ++ G LAY I+K+
Sbjct: 3 QHYEMIFILRPDLSEEQVNQAVAKYQEFLTENNATDLQTKIWGKRRLAYPIQKK------ 56
Query: 172 NTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKV 212
+DGIY+ F Y + LER M+ +DV+R + K+
Sbjct: 57 ---VDGIYVQFNYQADGSQVAPLERMMRLGEDVMRYLTIKL 94
>sp|B1YG99|RS6_EXIS2 30S ribosomal protein S6 OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=rpsF PE=3 SV=1
Length = 95
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+R+YE + ++RP++ E+ R AL +++ ++L GG + G KR A E
Sbjct: 1 MRKYEVLYIIRPEVDEEARKALVERFNKVLTDNGGTVEKTTEMG---------KRRFAYE 51
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIR 206
N +G Y+L +P + + L+R MK DD++R
Sbjct: 52 INDMREGFYVLLNVTAEPAATKELDRLMKISDDIVR 87
>sp|Q7V3T1|RS6_PROMM 30S ribosomal protein S6 OS=Prochlorococcus marinus (strain MIT
9313) GN=rpsF PE=3 SV=1
Length = 124
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD+ E+E KY E++ G ++ RG LAY I +
Sbjct: 7 YETMYILRPDIPEEEVETHVTKYREMVTEAGAEVLDNQMRGKRRLAYPI---------SN 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+ +GIY+ ++ + + LE+ M+ +DVIR + K
Sbjct: 58 HKEGIYVQLSHNGNGQQVAVLEKAMRLSEDVIRYLTVK 95
>sp|A2CE27|RS6_PROM3 30S ribosomal protein S6 OS=Prochlorococcus marinus (strain MIT
9303) GN=rpsF PE=3 SV=1
Length = 124
Score = 53.9 bits (128), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD+ E+E KY E++ G ++ RG LAY I +
Sbjct: 7 YETMYILRPDIPEEEVETHVTKYREMVTEAGAEVLDNQMRGKRRLAYPI---------SN 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+ +GIY+ ++ + + LE+ M+ +DVIR + K
Sbjct: 58 HKEGIYVQLSHNGNGQQVAVLEKAMRLSEDVIRYLTVK 95
>sp|A2BZ93|RS6_PROM5 30S ribosomal protein S6 OS=Prochlorococcus marinus (strain MIT
9515) GN=rpsF PE=3 SV=1
Length = 155
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD++E+E KY +LL G ++ RG LAY I K
Sbjct: 7 YETMYILRPDIAEEEVKNHIDKYNKLLEEFGATILDSQMRGKRRLAYQIAK--------- 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+ +GIY+ ++ + I +E+ M+ +DVIR + K
Sbjct: 58 HREGIYVQLSHQGDGQHIFKIEKAMRLSEDVIRYLTVK 95
>sp|B0CKD9|RS6_BRUSI 30S ribosomal protein S6 OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=rpsF PE=3 SV=1
Length = 148
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YE +++ R D+S+ + AL ++++ +L A GG + +V N G+ PL Y I+K KA
Sbjct: 4 YEHVLLARQDISQQQVDALVEQFKGVLEANGGKFGKVENWGLRPLTYRIKKNRKA----- 58
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRKQKQ 217
Y L ++ +ER M+ ++DV+R + +V + ++
Sbjct: 59 ----YYTLVNIDAPAAAVAEMERQMRINEDVLRFLTVRVEEHEE 98
>sp|B0K5L9|RS6_THEPX 30S ribosomal protein S6 OS=Thermoanaerobacter sp. (strain X514)
GN=rpsF PE=3 SV=1
Length = 95
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+R YETM +L PD+SE+ER L ++++ L++ GG G LAY I K+
Sbjct: 1 MRSYETMYILSPDLSEEERKGLIERFKNLIIENGGEITNFDEWGKRKLAYLIDKKP---- 56
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIR 206
+G Y+L + + + + LER K D V+R
Sbjct: 57 -----EGYYVLMNFNSDSKVSQELERVYKITDGVLR 87
>sp|B0K8G4|RS6_THEP3 30S ribosomal protein S6 OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=rpsF PE=3 SV=1
Length = 95
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+R YETM +L PD+SE+ER L ++++ L++ GG G LAY I K+
Sbjct: 1 MRSYETMYILSPDLSEEERKGLIERFKNLIIENGGEITNFDEWGKRKLAYLIDKKP---- 56
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIR 206
+G Y+L + + + + LER K D V+R
Sbjct: 57 -----EGYYVLMNFNSDSKVSQELERVYKITDGVLR 87
>sp|C4L008|RS6_EXISA 30S ribosomal protein S6 OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=rpsF PE=3 SV=1
Length = 95
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+R+YE + ++RP + E+ + AL +++ ++ GG + + G KR A E
Sbjct: 1 MRKYELLYIIRPSVDEEAKKALIERFNNVITENGGTVEKTTDMG---------KRRFAYE 51
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
N +G Y+L +P++I ER MK DDV+R + K
Sbjct: 52 INKMREGHYVLLNIVAEPKAILETERLMKISDDVVRQMTTK 92
>sp|A6KWD7|RS6_BACV8 30S ribosomal protein S6 OS=Bacteroides vulgatus (strain ATCC 8482
/ DSM 1447 / NCTC 11154) GN=rpsF PE=3 SV=1
Length = 114
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 9/104 (8%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
+ QYET+ +L P +S+ + +K++ +L A G + N G+ LAY I+K++
Sbjct: 1 MNQYETVFILTPVLSDVQMKEAVEKFKGILTAEGAEIINEENWGLKKLAYPIQKKS---- 56
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRK 214
G Y L + +P+ IE LE + D+ VIR +FK+ K
Sbjct: 57 -----TGFYQLIEFKAEPQVIEKLEINFRRDERVIRFLTFKMDK 95
>sp|Q46I73|RS6_PROMT 30S ribosomal protein S6 OS=Prochlorococcus marinus (strain NATL2A)
GN=rpsF PE=3 SV=1
Length = 138
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 51/98 (52%), Gaps = 9/98 (9%)
Query: 114 YETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNT 173
YETM +LRPD+ E+E + +KY E+L ++ RG LAY I K
Sbjct: 7 YETMYILRPDIPEEEVDSHLKKYSEILEKSETEVLDSQMRGKRRLAYPIAK--------- 57
Query: 174 YLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFK 211
+ +GIY+ ++ + + LER M+ +DVIR + K
Sbjct: 58 HKEGIYVQLSHKGNGQQVATLERAMRLSEDVIRYITVK 95
>sp|O78447|RR6_GUITH 30S ribosomal protein S6, chloroplastic OS=Guillardia theta GN=rps6
PE=3 SV=1
Length = 96
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGE 170
L YET+ +++P+++ED L + Y+ LL+ G + NRG L Y I+K
Sbjct: 4 LNSYETLYIVKPELTEDSLAKLIESYQGLLLERGAKNIITQNRGRRTLKYMIKK------ 57
Query: 171 SNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIR 206
Y D Y+ Y E I+ LER MK ++ ++R
Sbjct: 58 ---YKDAHYVQMNYEGNGEVIQLLERAMKINESIVR 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,388,300
Number of Sequences: 539616
Number of extensions: 3343488
Number of successful extensions: 8454
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 378
Number of HSP's that attempted gapping in prelim test: 7637
Number of HSP's gapped (non-prelim): 682
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)