Query 027743
Match_columns 219
No_of_seqs 112 out of 1029
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 14:29:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00123 rps6 ribosomal protei 100.0 4.7E-31 1E-35 203.7 13.1 94 109-211 3-96 (97)
2 PRK00453 rpsF 30S ribosomal pr 100.0 4.7E-30 1E-34 199.9 13.1 96 111-215 1-96 (108)
3 TIGR00166 S6 ribosomal protein 100.0 2.4E-29 5.2E-34 191.3 12.7 92 112-213 1-92 (93)
4 COG0360 RpsF Ribosomal protein 100.0 1.9E-29 4.1E-34 200.7 10.6 96 112-216 1-96 (112)
5 PF01250 Ribosomal_S6: Ribosom 100.0 5.3E-29 1.1E-33 187.8 11.5 92 112-212 1-92 (92)
6 KOG4708 Mitochondrial ribosoma 99.8 1.4E-20 3E-25 154.7 3.4 101 110-216 2-102 (141)
7 PRK14074 rpsF 30S ribosomal pr 99.8 3E-19 6.6E-24 158.0 8.8 79 125-214 161-239 (257)
8 PRK14074 rpsF 30S ribosomal pr 97.8 1.7E-05 3.8E-10 71.1 4.3 47 111-157 1-47 (257)
9 cd04905 ACT_CM-PDT C-terminal 62.9 53 0.0011 23.4 7.2 54 131-200 13-68 (80)
10 cd04893 ACT_GcvR_1 ACT domains 61.9 34 0.00073 24.6 5.9 51 129-198 11-61 (77)
11 PLN02289 ribulose-bisphosphate 60.3 27 0.00058 30.5 5.9 88 109-207 62-156 (176)
12 cd04880 ACT_AAAH-PDT-like ACT 58.0 62 0.0013 22.6 7.0 54 131-200 11-66 (75)
13 cd04902 ACT_3PGDH-xct C-termin 56.0 40 0.00087 22.8 5.3 64 130-212 10-73 (73)
14 PF00736 EF1_GNE: EF-1 guanine 50.8 1E+02 0.0023 23.5 7.2 75 116-205 4-79 (89)
15 PRK12276 putative heme peroxid 42.0 58 0.0013 29.6 5.3 65 123-200 27-91 (248)
16 cd04869 ACT_GcvR_2 ACT domains 38.8 1.3E+02 0.0029 20.9 6.3 55 130-198 10-66 (81)
17 PLN03075 nicotianamine synthas 37.3 56 0.0012 30.3 4.6 73 111-192 193-267 (296)
18 cd04931 ACT_PAH ACT domain of 32.3 2.3E+02 0.0049 21.6 7.4 55 132-202 27-86 (90)
19 cd00292 EF1B Elongation factor 31.2 2.3E+02 0.005 21.7 6.4 73 118-207 8-80 (88)
20 COG0252 AnsB L-asparaginase/ar 30.8 74 0.0016 30.2 4.3 84 73-160 25-115 (351)
21 cd04904 ACT_AAAH ACT domain of 29.5 2.1E+02 0.0046 20.3 7.3 59 132-206 13-71 (74)
22 PF03059 NAS: Nicotianamine sy 29.4 1.1E+02 0.0024 28.1 5.1 75 109-191 188-263 (276)
23 PF13670 PepSY_2: Peptidase pr 29.4 76 0.0016 23.1 3.4 45 134-189 32-77 (83)
24 KOG0130 RNA-binding protein RB 27.3 1.1E+02 0.0025 26.2 4.4 96 75-196 34-133 (170)
25 TIGR00519 asnASE_I L-asparagin 26.9 1.2E+02 0.0026 28.2 5.0 83 73-160 7-92 (336)
26 COG3473 Maleate cis-trans isom 26.2 2.6E+02 0.0056 25.6 6.7 76 116-200 120-205 (238)
27 PRK00499 rnpA ribonuclease P; 25.0 84 0.0018 24.5 3.1 34 111-144 73-106 (114)
28 PRK03031 rnpA ribonuclease P; 24.7 89 0.0019 24.8 3.2 33 112-144 84-116 (122)
29 PF12965 DUF3854: Domain of un 24.3 2.5E+02 0.0053 22.8 5.8 40 114-154 69-111 (130)
30 PF10432 bact-PGI_C: Bacterial 23.6 1.9E+02 0.0041 23.9 5.1 45 113-158 72-116 (155)
31 PF03147 FDX-ACB: Ferredoxin-f 23.6 1E+02 0.0023 23.0 3.3 35 114-148 58-94 (94)
32 cd04875 ACT_F4HF-DF N-terminal 22.8 2.7E+02 0.0058 19.3 6.3 53 129-198 9-63 (74)
33 cd03527 RuBisCO_small Ribulose 22.1 2.5E+02 0.0053 22.2 5.2 73 113-208 2-81 (99)
34 PRK11898 prephenate dehydratas 22.0 3.4E+02 0.0074 24.6 6.8 56 115-189 196-251 (283)
35 cd04929 ACT_TPH ACT domain of 21.9 3.2E+02 0.0069 19.8 6.7 53 132-200 13-65 (74)
36 PRK01732 rnpA ribonuclease P; 21.8 1E+02 0.0022 24.4 3.0 32 112-143 81-112 (114)
37 PRK00435 ef1B elongation facto 21.3 3.9E+02 0.0084 20.6 6.4 70 118-204 8-77 (88)
38 cd08976 BaFpgNei_N_4 Uncharact 21.1 2.6E+02 0.0056 21.6 5.1 58 122-186 1-65 (117)
39 cd04879 ACT_3PGDH-like ACT_3PG 21.1 2.4E+02 0.0052 18.1 5.5 59 131-208 11-69 (71)
40 PF09778 Guanylate_cyc_2: Guan 21.0 5.1E+02 0.011 23.1 7.5 33 173-205 157-209 (212)
41 PRK01492 rnpA ribonuclease P; 21.0 97 0.0021 24.7 2.7 31 113-143 87-117 (118)
42 PRK14163 heat shock protein Gr 20.6 57 0.0012 29.1 1.5 71 127-215 114-188 (214)
43 PF14257 DUF4349: Domain of un 20.6 4.3E+02 0.0093 23.2 7.0 75 110-204 46-120 (262)
No 1
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=99.97 E-value=4.7e-31 Score=203.73 Aligned_cols=94 Identities=38% Similarity=0.677 Sum_probs=91.8
Q ss_pred CCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcCh
Q 027743 109 PGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKP 188 (219)
Q Consensus 109 ~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P 188 (219)
.+|+.||+|+|++|++++++++++++++.++|.++||+|.++++||.|+|||||+|+. +|+|++++|.++|
T Consensus 3 ~~mr~YE~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~---------~G~Yv~~~f~~~~ 73 (97)
T CHL00123 3 SKLNKYETMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYE---------DGIYIQMNYSGNG 73 (97)
T ss_pred CcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCC---------EEEEEEEEEEECH
Confidence 5799999999999999999999999999999999999999999999999999999987 6999999999999
Q ss_pred hhHHHHHHHhCCCCCeeEEEeEe
Q 027743 189 ESIEALERTMKADDDVIRSSSFK 211 (219)
Q Consensus 189 ~aIkELEr~Lrlde~VLR~liVK 211 (219)
+++++|++.||+||+||||+++|
T Consensus 74 ~~i~eler~lri~e~VlR~m~vk 96 (97)
T CHL00123 74 KLVNSLEKALKLDENVLRYLTFK 96 (97)
T ss_pred HHHHHHHHHhCCCCCeEEEEEEe
Confidence 99999999999999999999997
No 2
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=99.97 E-value=4.7e-30 Score=199.90 Aligned_cols=96 Identities=34% Similarity=0.641 Sum_probs=93.6
Q ss_pred CCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhh
Q 027743 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPES 190 (219)
Q Consensus 111 Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~a 190 (219)
|++||+|+|++|++++++++++++++.++|.++||+|+++++||+|+|||+|+|+. +|+|++|+|+++|++
T Consensus 1 M~~YE~~~il~~~~~~~~~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LAY~I~k~~---------~G~Y~~~~f~~~~~~ 71 (108)
T PRK00453 1 MRKYEIVFILRPDLSEEQVKALVERFKGVITENGGTIHKVEDWGRRRLAYPINKLR---------KGHYVLLNFEAPPAA 71 (108)
T ss_pred CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEecccccccceEcCCCc---------EEEEEEEEEEeCHHH
Confidence 89999999999999999999999999999999999999999999999999999987 699999999999999
Q ss_pred HHHHHHHhCCCCCeeEEEeEeeccc
Q 027743 191 IEALERTMKADDDVIRSSSFKVRKQ 215 (219)
Q Consensus 191 IkELEr~Lrlde~VLR~liVKv~k~ 215 (219)
+++|++.|++|++||||+++|+++.
T Consensus 72 i~el~~~l~~~~~VlR~~~vk~~~~ 96 (108)
T PRK00453 72 IAELERLFRINEDVLRFLTVKVEEA 96 (108)
T ss_pred HHHHHHHhCCCCCeEEEEEEEeccc
Confidence 9999999999999999999998864
No 3
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=99.96 E-value=2.4e-29 Score=191.26 Aligned_cols=92 Identities=30% Similarity=0.549 Sum_probs=89.0
Q ss_pred CcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhH
Q 027743 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESI 191 (219)
Q Consensus 112 r~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aI 191 (219)
+.||+|+|++|+++++ ++++++++.++|.++||+|+++++||.|+|||+|+|+. +|+|++|+|+++|+++
T Consensus 1 ~~YE~~~Il~p~~~~~-~~~~~~~~~~~i~~~gg~i~~~~~~G~r~LaY~I~k~~---------~G~Y~~~~f~~~~~~i 70 (93)
T TIGR00166 1 RHYEIIFLVRPTLSEE-VKGQIERYKKVITLNGAEIVRSEDWGKRRLAYPIKKQL---------RAHYVLMNFSGEAQVI 70 (93)
T ss_pred CceeEEEEECCCCcHH-HHHHHHHHHHHHHhCCCEEEEEEeecceecceEcCCCc---------eEEEEEEEEEeCHHHH
Confidence 5799999999999998 99999999999999999999999999999999999987 6999999999999999
Q ss_pred HHHHHHhCCCCCeeEEEeEeec
Q 027743 192 EALERTMKADDDVIRSSSFKVR 213 (219)
Q Consensus 192 kELEr~Lrlde~VLR~liVKv~ 213 (219)
++|++.||+|++|||||++|++
T Consensus 71 ~el~~~lr~~~~VlR~~~vk~~ 92 (93)
T TIGR00166 71 KEFERTARINDNVIRSLIIKLE 92 (93)
T ss_pred HHHHHHhcCCcCeEEEEEEEec
Confidence 9999999999999999999975
No 4
>COG0360 RpsF Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.9e-29 Score=200.66 Aligned_cols=96 Identities=39% Similarity=0.681 Sum_probs=92.7
Q ss_pred CcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhH
Q 027743 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESI 191 (219)
Q Consensus 112 r~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aI 191 (219)
+.||+|+|++|++++++++++++++..+|+++||+|.++++||.|+|||+|+|++ +|||++|+|+|+|+++
T Consensus 1 ~~YEi~~iv~p~~see~~~~~ve~~~~~l~~~gg~i~~~e~wG~R~LAY~IkK~~---------~g~Y~l~~f~~~~~~i 71 (112)
T COG0360 1 RKYEIVFIVRPDLSEEQVAALVEKYKGVLTNNGGEIHKVEDWGKRRLAYPIKKLR---------EGHYVLMNFEAEPAAI 71 (112)
T ss_pred CceEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEehhhhhhhhcceecccc---------eEEEEEEEEEcCHHHH
Confidence 4699999999999999999999999999999999999999999999999999998 6999999999999999
Q ss_pred HHHHHHhCCCCCeeEEEeEeecccc
Q 027743 192 EALERTMKADDDVIRSSSFKVRKQK 216 (219)
Q Consensus 192 kELEr~Lrlde~VLR~liVKv~k~k 216 (219)
+||++.+|+|++|||||++|+++.+
T Consensus 72 ~Eler~~rin~~VlR~liik~~~~~ 96 (112)
T COG0360 72 AELERLLRINEDVLRHLIIKVEKAK 96 (112)
T ss_pred HHHHHHhccchhhheeeEEEechhh
Confidence 9999999999999999999998754
No 5
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=99.96 E-value=5.3e-29 Score=187.77 Aligned_cols=92 Identities=39% Similarity=0.690 Sum_probs=88.1
Q ss_pred CcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhH
Q 027743 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESI 191 (219)
Q Consensus 112 r~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aI 191 (219)
|.||+|+|++|++++++++++++++.++|.++||+|+++++||.|+|||+|+|+. +|+|++++|+++|+++
T Consensus 1 r~YE~~~il~~~~~~~~~~~~~~~~~~~i~~~gg~v~~~~~~G~r~LaY~i~k~~---------~G~Y~~~~f~~~~~~i 71 (92)
T PF01250_consen 1 RKYELMFILRPDLSEEEIKKLIERVKKIIEKNGGVVRSVENWGKRRLAYPIKKQK---------EGHYFLFNFDASPSAI 71 (92)
T ss_dssp EEEEEEEEE-TTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEESSEETTEC---------EEEEEEEEEEESTTHH
T ss_pred CceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEeecccccCCCCCC---------EEEEEEEEEEeCHHHH
Confidence 5799999999999999999999999999999999999999999999999999986 7999999999999999
Q ss_pred HHHHHHhCCCCCeeEEEeEee
Q 027743 192 EALERTMKADDDVIRSSSFKV 212 (219)
Q Consensus 192 kELEr~Lrlde~VLR~liVKv 212 (219)
++|++.|++|++||||+++|.
T Consensus 72 ~el~~~l~~~~~VlR~~~vK~ 92 (92)
T PF01250_consen 72 KELERKLRLDEDVLRYLIVKK 92 (92)
T ss_dssp HHHHHHHHTSTTEEEEEEEE-
T ss_pred HHHHHHhcCCCCeEEEEEEeC
Confidence 999999999999999999984
No 6
>KOG4708 consensus Mitochondrial ribosomal protein MRP17 [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.4e-20 Score=154.66 Aligned_cols=101 Identities=26% Similarity=0.353 Sum_probs=91.4
Q ss_pred CCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChh
Q 027743 110 GLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPE 189 (219)
Q Consensus 110 ~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~ 189 (219)
-|++||+++|+++....+ ...++.+..+.+...||+|++++++|.|.|+|+|+|++ +.|++|+||+|.|+++|+
T Consensus 2 lmp~yelali~~~~~rpe-la~~l~rt~~~lid~ngVvrdveslG~r~Lpy~i~K~~-----~~h~~g~~f~m~f~ss~~ 75 (141)
T KOG4708|consen 2 LMPLYELALITRSLSRPE-LAKLLARTGGHLIDRNGVVRDVESLGKRELPYKIKKLD-----QRHYRGQHFLMTFYSSPA 75 (141)
T ss_pred cchHHHHHHHhcccCCHH-HHHHHHHHhhHHhhcCCeEeechhcchhhhcchHHHhc-----CccccceEEEEeecCCHH
Confidence 499999999999977776 66666666666677779999999999999999999998 689999999999999999
Q ss_pred hHHHHHHHhCCCCCeeEEEeEeecccc
Q 027743 190 SIEALERTMKADDDVIRSSSFKVRKQK 216 (219)
Q Consensus 190 aIkELEr~Lrlde~VLR~liVKv~k~k 216 (219)
+..||.+.|+.|.+||||++||+++.|
T Consensus 76 v~~ei~~~l~~D~dviR~~IVKv~~~~ 102 (141)
T KOG4708|consen 76 VQSEIKRILKRDPDVIRWLIVKVDDIK 102 (141)
T ss_pred HHHHHHHHHhcChhhHHhhheeccccc
Confidence 999999999999999999999999864
No 7
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=99.79 E-value=3e-19 Score=158.01 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHHhCCCCCe
Q 027743 125 SEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKADDDV 204 (219)
Q Consensus 125 seeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~Lrlde~V 204 (219)
.+++++++++++.++|+++| ++++++||+|+|||||+|.+ +|+|++++|.++|++++||||.+|+||+|
T Consensus 161 ~PDQveevvEkik~iIe~~G--iikvE~WGkRkLAYpIkK~~---------eGyYvL~nFeAep~aIaELER~lRInE~V 229 (257)
T PRK14074 161 GPNQSNKTLEMLLKNIEASG--LIKYEYWGLLDFAYPINKMK---------SGHYCIMCISSTSSIMDEFVRRMKLNENI 229 (257)
T ss_pred CHHHHHHHHHHHHHHHHhcC--eeehHhhcchhhccccCCCC---------eEEEEEEEEEcCHHHHHHHHHHhcCccce
Confidence 34588889999999999995 57999999999999999987 69999999999999999999999999999
Q ss_pred eEEEeEeecc
Q 027743 205 IRSSSFKVRK 214 (219)
Q Consensus 205 LR~liVKv~k 214 (219)
||||++|+++
T Consensus 230 IRfLtVKlDe 239 (257)
T PRK14074 230 IRHLSVQVDK 239 (257)
T ss_pred eeEEEEeecc
Confidence 9999999886
No 8
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=97.83 E-value=1.7e-05 Score=71.13 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=45.8
Q ss_pred CCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccc
Q 027743 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIP 157 (219)
Q Consensus 111 Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~Rk 157 (219)
|++||.+||.+++++..+++.+++.+..+|.++||.|...+.||.+.
T Consensus 1 m~lYE~~fIa~q~ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~ 47 (257)
T PRK14074 1 MNLYEFTFIAQQGLLQQEVEEMVQELAVLLKNIKADVMFQQIKGILE 47 (257)
T ss_pred CCccceeeeecccccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhh
Confidence 89999999999999999999999999999999999999999999875
No 9
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=62.93 E-value=53 Score=23.42 Aligned_cols=54 Identities=4% Similarity=-0.041 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcC--hhhHHHHHHHhCC
Q 027743 131 ALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTK--PESIEALERTMKA 200 (219)
Q Consensus 131 ~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~--P~aIkELEr~Lrl 200 (219)
..+.++.+++.++|..|.+++. +|.++.. ..+++.+.+++. .+.++++-+.|+.
T Consensus 13 G~L~~il~~f~~~~ini~~i~s-------~p~~~~~---------~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 13 GALYDVLGVFAERGINLTKIES-------RPSKGGL---------WEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred CHHHHHHHHHHHCCcCEEEEEE-------EEcCCCC---------ceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3466888999999999999973 3443333 246777788875 4444444444444
No 10
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=61.92 E-value=34 Score=24.65 Aligned_cols=51 Identities=12% Similarity=0.082 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHHh
Q 027743 129 RLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTM 198 (219)
Q Consensus 129 i~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~L 198 (219)
...++.++.+.|.++|+.|.+....- +..+ .+..+.|+.+....++|++.|
T Consensus 11 r~GiVa~vs~~la~~g~nI~d~~q~~-------~~~~------------F~m~~~~~~~~~~~~~l~~~l 61 (77)
T cd04893 11 RPGILNELTRAVSESGCNILDSRMAI-------LGTE------------FALTMLVEGSWDAIAKLEAAL 61 (77)
T ss_pred CChHHHHHHHHHHHcCCCEEEceeeE-------EcCE------------EEEEEEEEeccccHHHHHHHH
Confidence 45678899999999999999988765 2221 356667776654566666443
No 11
>PLN02289 ribulose-bisphosphate carboxylase small chain
Probab=60.33 E-value=27 Score=30.48 Aligned_cols=88 Identities=24% Similarity=0.312 Sum_probs=58.9
Q ss_pred CCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEE----EE
Q 027743 109 PGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLF----TY 184 (219)
Q Consensus 109 ~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm----~F 184 (219)
.+.+.||++--| |.++++++.+ ++.=+|.+ |=+-.+|.=-.-..+|+-..+. .-|+||+||.| -|
T Consensus 62 ~~~kkfETfSYL-PpLtdeqI~k---QVeYli~~--GW~pclEf~~~~~~~~r~~~~s-----~~yyD~rYWtMWKLPMF 130 (176)
T PLN02289 62 IGKKKFETLSYL-PDLTDEELAK---EVDYLLRN--KWVPCLEFELEHGFVYREHHRS-----PGYYDGRYWTMWKLPMF 130 (176)
T ss_pred cCccceeeeecC-CCCCHHHHHH---HHHHHHhC--CCeeeeeeccCCceeEecCCCC-----CCcccCceeEEeccccC
Confidence 467899999988 5599988765 66666664 3455566554445667644432 45889999987 46
Q ss_pred Ec--ChhhHHHHHHHhCCCC-CeeEE
Q 027743 185 FT--KPESIEALERTMKADD-DVIRS 207 (219)
Q Consensus 185 ~a--~P~aIkELEr~Lrlde-~VLR~ 207 (219)
.+ ...++.||++-=|..+ .-||.
T Consensus 131 g~tD~~~Vl~Ei~eC~kayP~~yIRi 156 (176)
T PLN02289 131 GCTDSAQVLKELEEAKKAYPNAFIRI 156 (176)
T ss_pred CCCCHHHHHHHHHHHHHHCCcceEEE
Confidence 66 4788999998544443 34443
No 12
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=57.97 E-value=62 Score=22.63 Aligned_cols=54 Identities=11% Similarity=0.069 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEc--ChhhHHHHHHHhCC
Q 027743 131 ALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFT--KPESIEALERTMKA 200 (219)
Q Consensus 131 ~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a--~P~aIkELEr~Lrl 200 (219)
..+.++-+.+.++|..+..++.+ |+++..+ -+.|++.+++ ....++++-+.|+.
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Sr-------p~~~~~~---------~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESR-------PSRKGLW---------EYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEee-------ecCCCCc---------eEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 34668888999999999999876 4554431 4788889988 35555555555543
No 13
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=56.03 E-value=40 Score=22.80 Aligned_cols=64 Identities=6% Similarity=0.007 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHHhCCCCCeeEEEe
Q 027743 130 LALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSS 209 (219)
Q Consensus 130 ~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~Lrlde~VLR~li 209 (219)
...+.++..++.++|..|..+.. ++-.+. +..++.+..+. ....++.+.|+-.+.|++..+
T Consensus 10 ~G~l~~i~~~l~~~~inI~~~~~-------~~~~~~----------~~~~~~i~v~~--~~~~~~~~~l~~~~~v~~v~~ 70 (73)
T cd04902 10 PGVIGKVGTILGEAGINIAGMQV-------GRDEPG----------GEALMVLSVDE--PVPDEVLEELRALPGILSAKV 70 (73)
T ss_pred CCHHHHHHHHHHHcCcChhheEe-------eccCCC----------CEEEEEEEeCC--CCCHHHHHHHHcCCCccEEEE
Confidence 34566788999999999888753 111121 23456666665 334688889999999999888
Q ss_pred Eee
Q 027743 210 FKV 212 (219)
Q Consensus 210 VKv 212 (219)
+++
T Consensus 71 ~~~ 73 (73)
T cd04902 71 VEL 73 (73)
T ss_pred EeC
Confidence 763
No 14
>PF00736 EF1_GNE: EF-1 guanine nucleotide exchange domain; InterPro: IPR014038 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005853 eukaryotic translation elongation factor 1 complex; PDB: 2YY3_B 1GH8_A 1B64_A 1IJE_B 1IJF_B 1F60_B 1G7C_B 2B7B_B 2B7C_B.
Probab=50.83 E-value=1e+02 Score=23.54 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=50.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHH
Q 027743 116 TMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALE 195 (219)
Q Consensus 116 lm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELE 195 (219)
+++=+.|.-.+.++.++.+++.+.|...| . .=.+.......||-+++-+ +.+...-.--...+|+
T Consensus 4 vv~~V~P~d~e~Dl~~l~~~Ik~~i~~~g-l-~w~~~~~~epIaFGlk~L~-------------v~~vv~D~~~~~d~le 68 (89)
T PF00736_consen 4 VVLKVKPWDDETDLEKLEKKIKRKIPMEG-L-KWGEKSKEEPIAFGLKALQ-------------VSCVVEDDEGSTDDLE 68 (89)
T ss_dssp EEEEEEESSTTS-HHHHHHHHHHHS-TTT-E-EEEEEEEEEEECTTEEEEE-------------EEEEECTTTCGHHHHH
T ss_pred EEEEEeeCCCcccHHHHHHHHHHhchhcc-e-eeeeeeeeeeecccEEEEE-------------EEEEEEcCccChHHHH
Confidence 34445677777889999999988888665 3 1123344678899998853 4444443555888999
Q ss_pred HHh-CCCCCee
Q 027743 196 RTM-KADDDVI 205 (219)
Q Consensus 196 r~L-rlde~VL 205 (219)
+.+ +..+.|=
T Consensus 69 e~i~~~~e~Vq 79 (89)
T PF00736_consen 69 EAIESFEEGVQ 79 (89)
T ss_dssp HHHTTCTTTEE
T ss_pred HHHHhcCCCcc
Confidence 999 8777763
No 15
>PRK12276 putative heme peroxidase; Provisional
Probab=42.02 E-value=58 Score=29.60 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=52.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHHhCC
Q 027743 123 DMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKA 200 (219)
Q Consensus 123 ~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~Lrl 200 (219)
.+++++++++++++.++|.+..+. .+...|.. -.|.|..++ +.++++.+.-+++.++++++.|+.
T Consensus 27 ~l~~~eR~~~~~e~~~~l~~~~~~--~~~~~g~~-~~Y~v~G~r----------ADlm~w~~~~~~~~lq~~~~~~~~ 91 (248)
T PRK12276 27 TLSSDEREAAVDEFLAFLEKWEEV--EAAKQGSH-AIYSIVGQK----------ADLMLMILRPTMEELNEIENELNK 91 (248)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhc--ccccccce-eEEEeeccc----------ceEEEEEeCCCHHHHHHHHHHHHh
Confidence 478889999999999999875422 34455644 368888874 699999999999999999999976
No 16
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=38.77 E-value=1.3e+02 Score=20.90 Aligned_cols=55 Identities=7% Similarity=0.012 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeE-EEEEEEEEcChh-hHHHHHHHh
Q 027743 130 LALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDG-IYLLFTYFTKPE-SIEALERTM 198 (219)
Q Consensus 130 ~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG-~Yvlm~F~a~P~-aIkELEr~L 198 (219)
..++.++.+++.++|+.|.+++..-.. ..... .+ .++.+.++.+.. .+.+|+..|
T Consensus 10 ~Giv~~it~~l~~~~~nI~~~~~~~~~-----~~~~~---------~~~~~~~~~v~~p~~~~~~~l~~~l 66 (81)
T cd04869 10 PGIVHEVTQFLAQRNINIEDLSTETYS-----APMSG---------TPLFKAQATLALPAGTDLDALREEL 66 (81)
T ss_pred CCHHHHHHHHHHHcCCCeEEeEeeeec-----CCCCC---------cceEEEEEEEecCCCCCHHHHHHHH
Confidence 446778999999999999999874332 21111 12 344677777654 467776544
No 17
>PLN03075 nicotianamine synthase; Provisional
Probab=37.28 E-value=56 Score=30.32 Aligned_cols=73 Identities=16% Similarity=0.388 Sum_probs=53.6
Q ss_pred CCcccEEEEeCC--CCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcCh
Q 027743 111 LRQYETMMVLRP--DMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKP 188 (219)
Q Consensus 111 Mr~YElm~ILrP--~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P 188 (219)
...|+++++. . ++..++..++++++.+.+...|-.+... -||.|.+-||.-... ..+|.=++..+.-.+
T Consensus 193 l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~-~~G~r~~LYp~v~~~-------~~~gf~~~~~~~P~~ 263 (296)
T PLN03075 193 LKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS-AHGARAFLYPVVDPC-------DLRGFEVLSVFHPTD 263 (296)
T ss_pred cCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec-ccchHhhcCCCCChh-------hCCCeEEEEEECCCC
Confidence 5579999998 4 1244678899999999998766555555 799999999977654 235777777777666
Q ss_pred hhHH
Q 027743 189 ESIE 192 (219)
Q Consensus 189 ~aIk 192 (219)
++++
T Consensus 264 ~v~N 267 (296)
T PLN03075 264 EVIN 267 (296)
T ss_pred Ccee
Confidence 6654
No 18
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.30 E-value=2.3e+02 Score=21.57 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcC-h----hhHHHHHHHhCCCC
Q 027743 132 LTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTK-P----ESIEALERTMKADD 202 (219)
Q Consensus 132 lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~-P----~aIkELEr~Lrlde 202 (219)
.+-++-+.+.++|-.+.+++.+ |.++..+ -++|++.+++. . .++++|.+.+..+.
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSR-------P~~~~~~---------~Y~FfVDieg~~~~~~~~~l~~L~~~~~~~~ 86 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESR-------PSRLNKD---------EYEFFINLDKKSAPALDPIIKSLRNDIGATV 86 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEec-------cCCCCCc---------eEEEEEEEEcCCCHHHHHHHHHHHHHhCCCC
Confidence 4667788889999999999986 3444432 38888999986 2 35556666555443
No 19
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=31.25 E-value=2.3e+02 Score=21.65 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=48.1
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHH
Q 027743 118 MVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERT 197 (219)
Q Consensus 118 ~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~ 197 (219)
+=+.|.-.+.++.++.+++++++. .|..+- ..-...+||-|++-+ .++.+ .-.--...+|+..
T Consensus 8 l~V~P~~~e~Dl~~l~~~Ik~~~~-~gl~~~---~~~~epiaFGlk~L~-----------i~~vv--~D~~~~td~lee~ 70 (88)
T cd00292 8 LKVKPWDDEVDLDELEEKIRAILM-DGLLWG---KSKLEPIAFGLKALQ-----------IYCVV--EDDEGGTDELEEA 70 (88)
T ss_pred EEEecCCCCcCHHHHHHHHHHhCc-CCcEEE---EEEEEEeeeEeeEEE-----------EEEEE--EeCCcCcHHHHHH
Confidence 334677777788888889988655 455544 335678899999964 33333 3333556888888
Q ss_pred hCCCCCeeEE
Q 027743 198 MKADDDVIRS 207 (219)
Q Consensus 198 Lrlde~VLR~ 207 (219)
+.-.+.|=..
T Consensus 71 i~~~d~Vqsv 80 (88)
T cd00292 71 ISEEDGVQSV 80 (88)
T ss_pred HhccCCceEE
Confidence 8777766433
No 20
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=30.80 E-value=74 Score=30.20 Aligned_cols=84 Identities=19% Similarity=0.321 Sum_probs=53.9
Q ss_pred ccccCCCCCCCCC--CCCCCCCCC---cccccccCCCCCCCCCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhC--Cc
Q 027743 73 FFEGGGFGSDDDP--TSVPPGSVG---TATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAG--GG 145 (219)
Q Consensus 73 ~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~e~~~~~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~--GG 145 (219)
..-||=+++-.|. ....|. .+ +...+.+-++........-+..+.|..++++.+.+.++.+.+.+.+.+. .|
T Consensus 25 l~TGGTIa~~~~~~t~~~~~~-~~~~~i~~~~~~v~~~~~~~~i~~~~~~ni~S~~m~~~~w~~la~~I~~~~~~~~~dG 103 (351)
T COG0252 25 LATGGTIASGTDSSTGAVTPT-SGALEILALLPAVPALNIAANIEGEQVLNIDSSDMTPEDWLRLAEAINEALDDGDVDG 103 (351)
T ss_pred EecCCeeeccccCCCCccccc-cchHHHHHHhhhccccccccceeeEEeccCCcccCCHHHHHHHHHHHHHHhccCCCCe
Confidence 4567777773333 223222 22 2222323333333345677888889999999999999999999999887 66
Q ss_pred EEEEEEeeccccccc
Q 027743 146 MYVEVFNRGVIPLAY 160 (219)
Q Consensus 146 ~I~~venwG~RkLAY 160 (219)
.|+ -.|+..|+|
T Consensus 104 vVI---tHGTDTmee 115 (351)
T COG0252 104 VVI---THGTDTMEE 115 (351)
T ss_pred EEE---eCCCchHHH
Confidence 654 357777765
No 21
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=29.46 E-value=2.1e+02 Score=20.32 Aligned_cols=59 Identities=8% Similarity=0.060 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHHhCCCCCeeE
Q 027743 132 LTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIR 206 (219)
Q Consensus 132 lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~Lrlde~VLR 206 (219)
.+-++-+.+.++|-.+.++|.+ |++...+ -++|++.+++..+.++++-+.|+..-.-+|
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSR-------P~~~~~~---------~y~Ffvd~~~~~~~~~~~l~~L~~~~~~~~ 71 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESR-------PSRRNGS---------EYEFFVDCEVDRGDLDQLISSLRRVVADVN 71 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECC-------CCCCCCc---------eEEEEEEEEcChHHHHHHHHHHHHhcCeEE
Confidence 3557778889999999999975 4444432 388899999876666655555544333333
No 22
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=29.38 E-value=1.1e+02 Score=28.11 Aligned_cols=75 Identities=16% Similarity=0.299 Sum_probs=37.8
Q ss_pred CCCCcccEEEEeCC-CCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcC
Q 027743 109 PGLRQYETMMVLRP-DMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTK 187 (219)
Q Consensus 109 ~~Mr~YElm~ILrP-~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~ 187 (219)
.....|+.++|.-- .++.++-.++++++.+.+.. |+.|.-=--||.|.+-||.-.... ..|.=++..+.-.
T Consensus 188 ~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~-ga~l~~Rsa~GlR~~LYp~vd~~~-------l~gf~~~~~~hP~ 259 (276)
T PF03059_consen 188 YDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAP-GARLVVRSAHGLRSFLYPVVDPED-------LRGFEVLAVVHPT 259 (276)
T ss_dssp GG----SEEEE-TT-S----SHHHHHHHHHHHS-T-TSEEEEEE--GGGGGSS----TGG-------GTTEEEEEEE---
T ss_pred cccccCCEEEEhhhcccccchHHHHHHHHHhhCCC-CcEEEEecchhhHHHcCCCCChHH-------CCCeEEEEEECCC
Confidence 35668999999865 35667788999999999876 455544488999999999877542 2355555555544
Q ss_pred hhhH
Q 027743 188 PESI 191 (219)
Q Consensus 188 P~aI 191 (219)
++++
T Consensus 260 ~~Vi 263 (276)
T PF03059_consen 260 DEVI 263 (276)
T ss_dssp TT--
T ss_pred CCce
Confidence 4443
No 23
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=29.36 E-value=76 Score=23.11 Aligned_cols=45 Identities=22% Similarity=0.101 Sum_probs=33.3
Q ss_pred HHHHHHHhhCCcEEEEEEe-ecccccccccccccccCCCCceeeEEEEEEEEEcChh
Q 027743 134 QKYEELLVAGGGMYVEVFN-RGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPE 189 (219)
Q Consensus 134 k~l~~iI~k~GG~I~~ven-wG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~ 189 (219)
+.+...+.+.|..|.+++. .+.. |.+.-.++ +|+-+-++++....
T Consensus 32 ~~~~~~l~~~G~~v~~ve~~~~g~---yev~~~~~--------dG~~~ev~vD~~tG 77 (83)
T PF13670_consen 32 EQAVAKLEAQGYQVREVEFDDDGC---YEVEARDK--------DGKKVEVYVDPATG 77 (83)
T ss_pred HHHHHHHHhcCCceEEEEEcCCCE---EEEEEEEC--------CCCEEEEEEcCCCC
Confidence 3566677778889999988 6544 99985443 68888888887543
No 24
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=27.25 E-value=1.1e+02 Score=26.21 Aligned_cols=96 Identities=22% Similarity=0.369 Sum_probs=49.4
Q ss_pred ccCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCcccEEEEe----CCCCCHHHHHHHHHHHHHHHhhCCcEEEEE
Q 027743 75 EGGGFGSDDDPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVL----RPDMSEDERLALTQKYEELLVAGGGMYVEV 150 (219)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~Mr~YElm~IL----rP~lseeei~~lik~l~~iI~k~GG~I~~v 150 (219)
.|-|||+|.|----. +-....+++.-.---|..-+.-|--+|+ .++.+++++.. .+.+. |.|.++
T Consensus 34 kGRGf~~e~~sr~r~---r~~yd~vee~~s~~~pgPqrSVEGwIi~VtgvHeEatEedi~d-------~F~dy-GeiKNi 102 (170)
T KOG0130|consen 34 KGRGFGSEKDSRRRR---RLSYDDVEEDGSDMRPGPQRSVEGWIIFVTGVHEEATEEDIHD-------KFADY-GEIKNI 102 (170)
T ss_pred cCCCcccccchHHHh---hhhhhhHhhcccccCCCCccceeeEEEEEeccCcchhHHHHHH-------HHhhc-ccccce
Confidence 356899876543222 1111233332222234455667776665 44455555544 44444 344444
Q ss_pred EeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHH
Q 027743 151 FNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALER 196 (219)
Q Consensus 151 enwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr 196 (219)
.- -+++.. -|..| |.++.|...-++.+.++.
T Consensus 103 hL--------NLDRRt------Gy~KG-YaLvEYet~keAq~A~~~ 133 (170)
T KOG0130|consen 103 HL--------NLDRRT------GYVKG-YALVEYETLKEAQAAIDA 133 (170)
T ss_pred ee--------cccccc------ccccc-eeeeehHhHHHHHHHHHh
Confidence 32 122222 13344 899999998877777764
No 25
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=26.94 E-value=1.2e+02 Score=28.20 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=48.1
Q ss_pred ccccCCCCCCCCC--CCCCCCCCCcccccccCCCCCCCCCCCcccE-EEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEE
Q 027743 73 FFEGGGFGSDDDP--TSVPPGSVGTATAIEDKEEPQCPPGLRQYET-MMVLRPDMSEDERLALTQKYEELLVAGGGMYVE 149 (219)
Q Consensus 73 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~Mr~YEl-m~ILrP~lseeei~~lik~l~~iI~k~GG~I~~ 149 (219)
.+-||=+|+..++ ..+.|. +....+-+.-+.-+......+|. +.|-.++++.+++..+.+.+.+.+.+..|.|+
T Consensus 7 i~TGGTIa~~~~~~~~gl~p~--~~~~~ll~~~p~l~~~~~~~~~~~~~idSs~~tp~~w~~la~~I~~~~~~~dG~VV- 83 (336)
T TIGR00519 7 ISTGGTIASKVDYRTGAVHPV--FTADELLSAVPELLDIANIDGEALMNILSENMKPEYWVEIAEAVKKEYDDYDGFVI- 83 (336)
T ss_pred EECCCcccccccCCCCcccCC--CCHHHHHHhCccccccccceEEEecCCCcccCCHHHHHHHHHHHHHHHhcCCeEEE-
Confidence 3568888887666 344433 11111111111001111122333 34567789999999999999999888877765
Q ss_pred EEeeccccccc
Q 027743 150 VFNRGVIPLAY 160 (219)
Q Consensus 150 venwG~RkLAY 160 (219)
-.|.-.|+|
T Consensus 84 --tHGTDTme~ 92 (336)
T TIGR00519 84 --THGTDTMAY 92 (336)
T ss_pred --ccCCchHHH
Confidence 357776664
No 26
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.18 E-value=2.6e+02 Score=25.56 Aligned_cols=76 Identities=28% Similarity=0.315 Sum_probs=54.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccccc----------ccccccccccCCCCceeeEEEEEEEEE
Q 027743 116 TMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPL----------AYSIRKRNKAGESNTYLDGIYLLFTYF 185 (219)
Q Consensus 116 lm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkL----------AYpIkK~~ka~~~~~~~eG~Yvlm~F~ 185 (219)
-+.|+.|.+. .+.++..+.+.++|=+|.+...+|...- +|.+-|+-. ..-.||.++.++=.
T Consensus 120 ri~vlTPY~~-----evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~----~~~~DaiFiSCTnl 190 (238)
T COG3473 120 RISVLTPYID-----EVNQREIEFLEANGFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVF----TPDADAIFISCTNL 190 (238)
T ss_pred eEEEeccchh-----hhhhHHHHHHHhCCeEEEEeeccCCcccchhcccChHHHHHHHHHhc----CCCCCeEEEEeecc
Confidence 3678888743 3445788899999999999988886531 244444322 22358888887777
Q ss_pred cChhhHHHHHHHhCC
Q 027743 186 TKPESIEALERTMKA 200 (219)
Q Consensus 186 a~P~aIkELEr~Lrl 200 (219)
-.-++|..||+.+.+
T Consensus 191 Rt~eii~~lE~~~G~ 205 (238)
T COG3473 191 RTFEIIEKLERDTGV 205 (238)
T ss_pred ccHHHHHHHHHHhCC
Confidence 788999999998764
No 27
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=24.98 E-value=84 Score=24.54 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=28.9
Q ss_pred CCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCC
Q 027743 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGG 144 (219)
Q Consensus 111 Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~G 144 (219)
...|++++|.++...+....++.+.+..++.+.+
T Consensus 73 ~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k~~ 106 (114)
T PRK00499 73 KKGYDFVVIARKPAAELDYKEIKKSLIHVLKLAK 106 (114)
T ss_pred cCCceEEEEECCCcccCCHHHHHHHHHHHHHHhC
Confidence 4468999999999888888888889999998865
No 28
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=24.74 E-value=89 Score=24.80 Aligned_cols=33 Identities=18% Similarity=0.408 Sum_probs=28.8
Q ss_pred CcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCC
Q 027743 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGG 144 (219)
Q Consensus 112 r~YElm~ILrP~lseeei~~lik~l~~iI~k~G 144 (219)
+-|++++|.++...+-...++.+.+..++.+.+
T Consensus 84 ~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k~~ 116 (122)
T PRK03031 84 PGWDLVIIVKPTAAECNYEQFLQELEQLLIQAE 116 (122)
T ss_pred CCceEEEEECCCcccCCHHHHHHHHHHHHHHcc
Confidence 469999999999888888888889999988875
No 29
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=24.27 E-value=2.5e+02 Score=22.77 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=31.0
Q ss_pred ccEEEEeCCCC---CHHHHHHHHHHHHHHHhhCCcEEEEEEeec
Q 027743 114 YETMMVLRPDM---SEDERLALTQKYEELLVAGGGMYVEVFNRG 154 (219)
Q Consensus 114 YElm~ILrP~l---seeei~~lik~l~~iI~k~GG~I~~venwG 154 (219)
=|.++.++.+. +...+.+.++++..+|.+.|+.|. +-.|-
T Consensus 69 r~v~iaFD~D~~~~Tn~~V~~a~~~l~~~L~~~G~~v~-~~~w~ 111 (130)
T PF12965_consen 69 REVYIAFDADTKPKTNKNVRRAIKRLGKLLKEAGCKVK-IITWP 111 (130)
T ss_pred ceEEEEecCCCccchhHHHHHHHHHHHHHHHHCCCEEE-EEEeC
Confidence 47888888883 347899999999999999998844 44453
No 30
>PF10432 bact-PGI_C: Bacterial phospho-glucose isomerase C-terminal region; InterPro: IPR019490 Phosphoglucose isomerase (PGI) catalyses the interconversion of phosphoglucose and phosphofructose, and is a component of many sugar metabolic pathways. In some archaea and bacteria PGI activity occurs via a bifunctional enzyme that also exhibits phosphomannose isomerase (PMI) activity. Though not closely related to eukaryotic PGIs, the bifunctional enzyme is similar enough that the sequence includes the cluster of threonines and serines that forms the sugar phosphate-binding site in conventional PGI. This entry represents the C-terminal half of the bifunctional PGI/PMI enzyme, which contains many of the active catalytic site residues. The enzyme is thought to use the same catalytic mechanisms for both glucose ring-opening and isomerisation for the interconversion of glucose 6-phosphate to fructose 6-phosphate [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity; PDB: 1TZB_A 1X9H_A 1TZC_B 1X9I_A 1WIW_A.
Probab=23.62 E-value=1.9e+02 Score=23.86 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=32.7
Q ss_pred cccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccccc
Q 027743 113 QYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPL 158 (219)
Q Consensus 113 ~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkL 158 (219)
.+..+++-++ ......+..++.+.+++.+.|..++.++--|.-.|
T Consensus 72 ~~~~v~l~d~-~~~~~~~~r~~~~~e~~~~~~~~v~~v~~~g~s~l 116 (155)
T PF10432_consen 72 RLRVVLLRDP-EDHPRVQRRVEITREIAEDRGVRVIEVEAEGGSPL 116 (155)
T ss_dssp TEEEEEEC-T-CCHHHHHHHHHHHHHHHTTCSSEEEEE--SCCCHH
T ss_pred ceEEEEEEcC-CccccchhhhHHHHHHHHhcCCcEEEEecCCCCHH
Confidence 4455555555 56767788999999999999999999998876644
No 31
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=23.58 E-value=1e+02 Score=22.97 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=21.3
Q ss_pred ccEEEEe-CCCCCHHHHHHHHHHHHHHHhh-CCcEEE
Q 027743 114 YETMMVL-RPDMSEDERLALTQKYEELLVA-GGGMYV 148 (219)
Q Consensus 114 YElm~IL-rP~lseeei~~lik~l~~iI~k-~GG~I~ 148 (219)
|.+++=- .-++++++++++.+++.+.|.+ .|++++
T Consensus 58 ~rl~~~~~~~TLt~~ev~~~~~~i~~~l~~~~~~~lR 94 (94)
T PF03147_consen 58 YRLTYQSPDRTLTDEEVNEIHDKIIKALEKKLGAELR 94 (94)
T ss_dssp EEEEE--SSS---HHHHHHHHHHHHHHHHHTCT-BEE
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhCcEeC
Confidence 4444332 3469999999999999999965 466553
No 32
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.82 E-value=2.7e+02 Score=19.31 Aligned_cols=53 Identities=21% Similarity=0.136 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChh--hHHHHHHHh
Q 027743 129 RLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPE--SIEALERTM 198 (219)
Q Consensus 129 i~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~--aIkELEr~L 198 (219)
...++.++..+|.++|+.|..++..=.. .. . =.++.+.++.++. .+.+|+..|
T Consensus 9 ~~Giv~~it~~l~~~g~nI~~~~~~~~~-----~~--~----------~f~~~~~~~~~~~~~~~~~l~~~l 63 (74)
T cd04875 9 RPGIVAAVSGFLAEHGGNIVESDQFVDP-----DS--G----------RFFMRVEFELEGFDLSREALEAAF 63 (74)
T ss_pred CCCHHHHHHHHHHHcCCCEEeeeeeecC-----CC--C----------eEEEEEEEEeCCCCCCHHHHHHHH
Confidence 4457889999999999999998665311 11 1 1456677777753 477777654
No 33
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=22.14 E-value=2.5e+02 Score=22.21 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=46.4
Q ss_pred cccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEE----EEEc--
Q 027743 113 QYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLF----TYFT-- 186 (219)
Q Consensus 113 ~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm----~F~a-- 186 (219)
.||++--| |.++++++.+ ++..+|.+ |=+..+|.=-.++ .+++|+.| .|++
T Consensus 2 ~~~t~syl-p~lt~~~i~~---QI~yll~q--G~~~~lE~ad~~~-----------------~~~~yW~mwklP~f~~~d 58 (99)
T cd03527 2 TFETFSYL-PPLTDEQIAK---QIDYIISN--GWAPCLEFTEPEH-----------------YDNRYWTMWKLPMFGCTD 58 (99)
T ss_pred cccccccC-CCCCHHHHHH---HHHHHHhC--CCEEEEEcccCCC-----------------CCCCEEeeccCCCCCCCC
Confidence 56776666 6689887765 77777764 3455566433322 35677776 5665
Q ss_pred ChhhHHHHHHHhCCCC-CeeEEE
Q 027743 187 KPESIEALERTMKADD-DVIRSS 208 (219)
Q Consensus 187 ~P~aIkELEr~Lrlde-~VLR~l 208 (219)
..+++.||++-++-.+ .-+|..
T Consensus 59 ~~~Vl~ei~~C~~~~p~~YVRli 81 (99)
T cd03527 59 PAQVLREIEACRKAYPDHYVRVV 81 (99)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEE
Confidence 4789999999765443 444543
No 34
>PRK11898 prephenate dehydratase; Provisional
Probab=22.03 E-value=3.4e+02 Score=24.59 Aligned_cols=56 Identities=11% Similarity=-0.007 Sum_probs=38.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChh
Q 027743 115 ETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPE 189 (219)
Q Consensus 115 Elm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~ 189 (219)
-+.+++...-. ....+-++-+++.++|-.+++++.+ |+++..+ .++|++.|+++..
T Consensus 196 ktslif~l~~~---~pGsL~~~L~~F~~~~INLt~IeSR-------P~~~~~~---------~y~F~vd~eg~~~ 251 (283)
T PRK11898 196 KTSLVLTLPNN---LPGALYKALSEFAWRGINLTRIESR-------PTKTGLG---------TYFFFIDVEGHID 251 (283)
T ss_pred eEEEEEEeCCC---CccHHHHHHHHHHHCCCCeeeEecc-------cCCCCCc---------cEEEEEEEEccCC
Confidence 46677665322 1223556667888999999999987 5555443 4889999998766
No 35
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.95 E-value=3.2e+02 Score=19.84 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHHhCC
Q 027743 132 LTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKA 200 (219)
Q Consensus 132 lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~Lrl 200 (219)
.+.++-+++.++|..+.+++.+= .++..+ -++|++.++++...++.+-+.|+.
T Consensus 13 ~L~~iL~~f~~~~inl~~IeSRP-------~~~~~~---------~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 13 GLAKALKLFQELGINVVHIESRK-------SKRRSS---------EFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred HHHHHHHHHHHCCCCEEEEEecc-------CCCCCc---------eEEEEEEEEcCHHHHHHHHHHHHH
Confidence 35678888899999999999864 333332 388999999987766666555543
No 36
>PRK01732 rnpA ribonuclease P; Reviewed
Probab=21.81 E-value=1e+02 Score=24.37 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=26.7
Q ss_pred CcccEEEEeCCCCCHHHHHHHHHHHHHHHhhC
Q 027743 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAG 143 (219)
Q Consensus 112 r~YElm~ILrP~lseeei~~lik~l~~iI~k~ 143 (219)
+-|++++|.++.+.+-...++.+.+..++.+.
T Consensus 81 ~~~diVviar~~~~~~~~~~l~~~l~~ll~k~ 112 (114)
T PRK01732 81 PAMDFVVIAKKGVADLDNRELFELLEKLWRRH 112 (114)
T ss_pred CCCeEEEEeCCCcccCCHHHHHHHHHHHHHHh
Confidence 46999999999988888888888888887764
No 37
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=21.33 E-value=3.9e+02 Score=20.57 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=46.8
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHH
Q 027743 118 MVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERT 197 (219)
Q Consensus 118 ~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~ 197 (219)
+=+.|.-.+.+++++.+++++++.+ |..+. ..-...+||-|++-+ .++++.=+ -....+||..
T Consensus 8 ~~V~P~d~e~Dl~~L~~~ik~~~~~-g~~~~---~~~~ePIaFGLkaL~-----------i~~vv~D~--~~~td~lee~ 70 (88)
T PRK00435 8 LKVMPESPEVDLDELKEKIKEVLPE-GYKIN---GIEEEPIAFGLKALK-----------LYVIMPDE--EGGTEPVEEA 70 (88)
T ss_pred EEECCCCCCcCHHHHHHHHHHhCcC-CcEEe---EeEEEEeeccceeEE-----------EEEEEEcC--CcCcHHHHHH
Confidence 3346777777888899999887664 55554 345788999999964 44444332 3445778877
Q ss_pred hCCCCCe
Q 027743 198 MKADDDV 204 (219)
Q Consensus 198 Lrlde~V 204 (219)
+.-=++|
T Consensus 71 i~~~e~V 77 (88)
T PRK00435 71 FANVEGV 77 (88)
T ss_pred HhccCCC
Confidence 7655554
No 38
>cd08976 BaFpgNei_N_4 Uncharacterized bacterial subgroup of the N-terminal domain of Fpg (formamidopyrimidine-DNA glycosylase, MutM)_Nei (endonuclease VIII) base-excision repair DNA glycosylases. This family is an uncharacterized bacterial subgroup of the FpgNei_N domain superfamily. DNA glycosylases maintain genome integrity by recognizing base lesions created by ionizing radiation, alkylating or oxidizing agents, and endogenous reactive oxygen species. They initiate the base-excision repair process, which is completed with the help of enzymes such as phosphodiesterases, AP endonucleases, DNA polymerases and DNA ligases. DNA glycosylases cleave the N-glycosyl bond between the sugar and the damaged base, creating an AP (apurinic/apyrimidinic) site. Most FpgNei DNA glycosylases use their N-terminal proline residue as the key catalytic nucleophile, and the reaction proceeds via a Schiff base intermediate. This N-terminal proline is conserved in this family. Escherichia coli Fpg prefers 8
Probab=21.13 E-value=2.6e+02 Score=21.57 Aligned_cols=58 Identities=22% Similarity=0.132 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccc-------cccccccCCCCceeeEEEEEEEEEc
Q 027743 122 PDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYS-------IRKRNKAGESNTYLDGIYLLFTYFT 186 (219)
Q Consensus 122 P~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYp-------IkK~~ka~~~~~~~eG~Yvlm~F~a 186 (219)
|+++| ++.+.+.+...+. |-.|.+++-...+.+..+ +..+. -......|.|+++.|+.
T Consensus 1 PELPE--Ve~~~~~l~~~~~--g~~I~~v~~~~~~~~~~~~~~~~~~L~G~~---i~~v~RrGK~L~~~l~~ 65 (117)
T cd08976 1 PELPE--VEVQKQYLERTSL--HRKIVEVEVGDDKILGEPKATLREVLEGRT---FTETHRIGKYLFLKTKE 65 (117)
T ss_pred CCCcc--hHHHHHHHHHHhC--CCEEEEEEECCCCEeccCHHHHHhhcCCCE---EEEEEEeeeEEEEEcCC
Confidence 44443 6666666666555 667888886544433211 12111 12445578888888864
No 39
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=21.08 E-value=2.4e+02 Score=18.10 Aligned_cols=59 Identities=15% Similarity=0.100 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHHhCCCCCeeEEE
Q 027743 131 ALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSS 208 (219)
Q Consensus 131 ~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~Lrlde~VLR~l 208 (219)
..+.++..++.+.|..|..+... ... .+.+..+.|..+...+.++-+.|+--+.|++.-
T Consensus 11 g~l~~i~~~l~~~~~nI~~~~~~----------~~~---------~~~~~~~~~~v~~~~~~~l~~~l~~~~~V~~v~ 69 (71)
T cd04879 11 GVIGKVGTILGEHGINIAAMQVG----------RKE---------KGGIAYMVLDVDSPVPEEVLEELKALPGIIRVR 69 (71)
T ss_pred CHHHHHHHHHHhcCCCeeeEEEe----------ccC---------CCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEE
Confidence 45678889999999999888741 110 001223333333235778888899999988753
No 40
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=20.99 E-value=5.1e+02 Score=23.15 Aligned_cols=33 Identities=24% Similarity=0.617 Sum_probs=21.2
Q ss_pred ceeeEEEEEEE-EEc-------------------ChhhHHHHHHHhCCCCCee
Q 027743 173 TYLDGIYLLFT-YFT-------------------KPESIEALERTMKADDDVI 205 (219)
Q Consensus 173 ~~~eG~Yvlm~-F~a-------------------~P~aIkELEr~Lrlde~VL 205 (219)
.-+.|||+++- |++ +++++++=.+.+..||+||
T Consensus 157 ~~Y~GHYVVlcGyd~~~~~~~yrdPa~~~~~c~~s~~~ld~AR~s~GTDeDii 209 (212)
T PF09778_consen 157 PDYQGHYVVLCGYDAATKEFEYRDPASSDRVCRVSPEALDEARKSFGTDEDII 209 (212)
T ss_pred CCccEEEEEEEeecCCCCeEEEeCCccccceeecCHHHHHHHHhccCCCcceE
Confidence 45799999752 333 3444555555677888876
No 41
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=20.98 E-value=97 Score=24.72 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=26.6
Q ss_pred cccEEEEeCCCCCHHHHHHHHHHHHHHHhhC
Q 027743 113 QYETMMVLRPDMSEDERLALTQKYEELLVAG 143 (219)
Q Consensus 113 ~YElm~ILrP~lseeei~~lik~l~~iI~k~ 143 (219)
-|.+++|.++...+-+..++.+.+..+|..+
T Consensus 87 g~DiVviaR~~~~~~~~~~l~~~l~~l~~~~ 117 (118)
T PRK01492 87 KFAMIIIPRKGFEEINFSHLNYELSKIILRN 117 (118)
T ss_pred CceEEEEECCCcccCCHHHHHHHHHHHHHhc
Confidence 6999999999988888888888888887653
No 42
>PRK14163 heat shock protein GrpE; Provisional
Probab=20.62 E-value=57 Score=29.11 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEc----ChhhHHHHHHHhCCCC
Q 027743 127 DERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFT----KPESIEALERTMKADD 202 (219)
Q Consensus 127 eei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a----~P~aIkELEr~Lrlde 202 (219)
+.++-+.+.+.++|.++| |..++..|.. |-=+. |-.++.... +..++..+.+-+++.+
T Consensus 114 ~Gv~mi~k~l~~~L~k~G--v~~I~~~G~~---FDP~~-------------HEAv~~~~~~~~~~gtVv~v~qkGY~l~~ 175 (214)
T PRK14163 114 GGFKSVAESLETTVAKLG--LQQFGKEGEP---FDPTI-------------HEALMHSYAPDVTETTCVAILQPGYRIGE 175 (214)
T ss_pred HHHHHHHHHHHHHHHHCC--CEEeCCCCCC---CChhH-------------hceeeeecCCCCCcCEEEEEeeCCcCcCC
Confidence 467788888899999887 4455555542 11111 334444444 3667778888999999
Q ss_pred CeeEEEeEeeccc
Q 027743 203 DVIRSSSFKVRKQ 215 (219)
Q Consensus 203 ~VLR~liVKv~k~ 215 (219)
.|||...|+|.+.
T Consensus 176 RVLRPA~V~Vsk~ 188 (214)
T PRK14163 176 RTIRPARVAVAEP 188 (214)
T ss_pred EeccCceEEECCC
Confidence 9999999999874
No 43
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.55 E-value=4.3e+02 Score=23.17 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=55.4
Q ss_pred CCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChh
Q 027743 110 GLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPE 189 (219)
Q Consensus 110 ~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~ 189 (219)
.+-.|+..+-+.- +++.+..+++.+++.+.||.|.+...++. ... .......+.+.-+++
T Consensus 46 rkii~~~~l~lev----~d~~~a~~~i~~~~~~~gG~i~~~~~~~~-------~~~---------~~~~~~~ltiRVP~~ 105 (262)
T PF14257_consen 46 RKIIKTADLSLEV----KDVEKAVKKIENLVESYGGYIESSSSSSS-------GGS---------DDERSASLTIRVPAD 105 (262)
T ss_pred ceEEEEEEEEEEE----CCHHHHHHHHHHHHHHcCCEEEEEeeecc-------cCC---------CCcceEEEEEEECHH
Confidence 3445565555554 36888899999999999999999996544 111 145778899999999
Q ss_pred hHHHHHHHhCCCCCe
Q 027743 190 SIEALERTMKADDDV 204 (219)
Q Consensus 190 aIkELEr~Lrlde~V 204 (219)
...++-..|.--..|
T Consensus 106 ~~~~~l~~l~~~g~v 120 (262)
T PF14257_consen 106 KFDSFLDELSELGKV 120 (262)
T ss_pred HHHHHHHHHhccCce
Confidence 999988888754433
Done!