Query 027743
Match_columns 219
No_of_seqs 112 out of 1029
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 00:52:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_F Ribosomal protein S6; s 100.0 7.3E-54 2.5E-58 359.6 9.0 154 59-217 14-168 (168)
2 1cqm_A Ribosomal protein S6; a 100.0 2.1E-32 7.3E-37 210.7 11.8 95 111-214 1-95 (101)
3 2j5a_A 30S ribosomal protein S 100.0 7.9E-32 2.7E-36 210.7 12.3 98 110-216 6-104 (110)
4 1vmb_A 30S ribosomal protein S 100.0 3.4E-31 1.2E-35 216.1 10.5 100 107-215 14-114 (140)
5 3r3t_A 30S ribosomal protein S 100.0 4.7E-33 1.6E-37 213.9 -1.2 97 109-214 2-98 (99)
6 3r8n_F 30S ribosomal protein S 100.0 6.2E-32 2.1E-36 208.0 2.2 95 111-215 1-95 (100)
7 3i1m_F 30S ribosomal protein S 100.0 2.9E-30 1E-34 209.4 5.3 94 111-214 1-94 (135)
8 2kjw_A TS9, 30S ribosomal prot 99.7 2.8E-17 9.7E-22 126.5 3.5 55 110-164 42-96 (96)
9 3zzp_A TS9, ribosomal protein 99.1 3.2E-11 1.1E-15 89.2 3.5 40 175-214 3-42 (77)
10 2kjw_A TS9, 30S ribosomal prot 98.8 5.8E-10 2E-14 85.7 0.8 39 175-213 3-41 (96)
11 3zzp_A TS9, ribosomal protein 98.2 9.1E-07 3.1E-11 65.2 4.6 37 109-145 41-77 (77)
12 1wdd_S Ribulose bisphosphate c 77.2 1.2 4.2E-05 35.6 2.4 90 107-208 5-101 (128)
13 1rbl_M Ribulose 1,5 bisphospha 74.0 1.6 5.5E-05 33.9 2.2 81 106-209 3-90 (109)
14 1gk8_I Ribulose bisphosphate c 56.3 4.7 0.00016 32.7 1.8 95 107-208 5-108 (140)
15 2zw2_A Putative uncharacterize 54.4 31 0.0011 25.3 5.9 76 109-212 3-84 (92)
16 1gtd_A MTH169; synthetase, FGA 52.7 24 0.00081 25.4 5.0 70 110-207 1-75 (85)
17 1vq3_A Phosphoribosylformylgly 44.9 74 0.0025 23.7 6.7 72 110-209 14-91 (94)
18 3j20_L 30S ribosomal protein S 44.5 87 0.003 23.4 7.1 79 125-204 12-94 (102)
19 2dgu_A Heterogeneous nuclear r 39.9 84 0.0029 21.8 6.2 71 111-212 8-82 (103)
20 3bbn_J Ribosomal protein S10; 37.7 75 0.0026 26.9 6.4 88 112-204 97-191 (197)
21 2yx5_A UPF0062 protein MJ1593; 35.9 67 0.0023 22.8 5.1 68 112-207 2-75 (83)
22 1svd_M Ribulose bisphosphate c 35.8 19 0.00064 27.9 2.2 82 105-209 4-92 (110)
23 3dtz_A Putative chlorite dismu 34.7 1.4E+02 0.0048 25.9 7.9 65 117-199 30-99 (244)
24 1x4a_A Splicing factor, argini 33.1 1.2E+02 0.0042 21.0 7.8 70 116-211 24-97 (109)
25 2okq_A Hypothetical protein YB 31.5 41 0.0014 27.3 3.6 47 109-156 23-69 (141)
26 3nn1_A Chlorite dismutase; fer 31.4 65 0.0022 27.8 5.1 61 124-200 31-91 (241)
27 1nns_A L-asparaginase II; amid 31.2 32 0.0011 30.5 3.2 47 111-160 48-94 (326)
28 1wls_A L-asparaginase; structu 30.5 31 0.0011 30.7 3.1 82 74-160 7-88 (328)
29 1t4a_A PURS; tetramer, complex 28.9 1.1E+02 0.0038 21.7 5.3 68 112-207 2-74 (84)
30 1dkg_A Nucleotide exchange fac 28.5 23 0.00077 29.6 1.7 71 127-215 121-195 (197)
31 2i0f_A 6,7-dimethyl-8-ribityll 28.1 68 0.0023 26.0 4.5 50 117-166 15-64 (157)
32 2d9o_A DNAJ (HSP40) homolog, s 27.5 90 0.0031 22.6 4.7 64 122-213 27-90 (100)
33 3u5c_U 40S ribosomal protein S 27.2 2.2E+02 0.0074 22.0 7.3 87 116-204 22-112 (121)
34 2x3d_A SSO6206; unknown functi 26.1 78 0.0027 24.0 4.1 40 118-164 53-94 (96)
35 3lo3_A Uncharacterized conserv 25.6 1.3E+02 0.0044 21.6 5.2 67 109-191 1-67 (94)
36 1nxi_A Conserved hypothetical 24.9 1.7E+02 0.0058 22.6 6.1 44 110-156 78-121 (132)
37 3n0v_A Formyltetrahydrofolate 24.4 1.6E+02 0.0054 25.6 6.4 66 109-198 4-71 (286)
38 2cpz_A CUG triplet repeat RNA- 22.6 2E+02 0.0069 20.1 6.2 32 178-209 68-101 (115)
39 2ebu_A Replication factor C su 22.5 1.2E+02 0.004 23.0 4.6 38 108-149 18-55 (112)
40 3a6m_A Protein GRPE, HSP-70 co 22.1 24 0.00082 29.1 0.6 70 127-214 98-168 (177)
41 2l42_A DNA-binding protein RAP 21.7 20 0.0007 27.7 0.1 48 118-165 17-64 (106)
42 3c6v_A Probable tautomerase/de 21.5 3E+02 0.01 21.7 8.6 65 109-186 20-89 (161)
43 2yy3_A Elongation factor 1-bet 21.4 1.8E+02 0.0062 21.4 5.3 73 115-204 5-80 (91)
44 3mb2_A 4-oxalocrotonate tautom 21.0 1.2E+02 0.0042 20.1 4.1 30 111-142 1-30 (72)
45 1tig_A IF3-C, translation init 20.8 1.9E+02 0.0064 21.4 5.3 42 118-160 10-51 (94)
46 2vxh_A Chlorite dismutase; hem 20.3 1.4E+02 0.0046 26.0 5.1 62 124-201 39-100 (251)
47 1u6f_A Tcubp1, RNA-binding pro 20.1 2.5E+02 0.0086 20.2 6.2 73 116-211 44-120 (139)
No 1
>3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=7.3e-54 Score=359.62 Aligned_cols=154 Identities=78% Similarity=1.246 Sum_probs=105.4
Q ss_pred eeeEeeeeecccccccccCCCCC-CCCCCCCCCCCCCcccccccCCCCCCCCCCCcccEEEEeCCCCCHHHHHHHHHHHH
Q 027743 59 SLTVKAQTLDFSGSFFEGGGFGS-DDDPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYE 137 (219)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~~~~~~Mr~YElm~ILrP~lseeei~~lik~l~ 137 (219)
+++||+|+|||+|+|||| |||+ ||||+|++ | +| +|++++|++|||++||+||+|+|++|++++++++++++++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~--~~~~~~~~~~~~~~Mr~YE~m~IlrPdl~eeev~alver~~ 88 (168)
T 3bbn_F 14 GPYVKAIALDFSGSFFEG-GFGGLDEDPPSTP-P-AG--LAVEEKPEPQCPPGLRQYETMAVLRPDMTEDERLTLTQKYE 88 (168)
T ss_dssp -----------------------------------------------------CEEEEEEEEECTTSCHHHHHSTTHHHH
T ss_pred cceeeeeeeccccceeec-cCCCcccCCCCCC-C-CC--ccccccccccCCCCCCceeEEEEECCCCCHHHHHHHHHHHH
Confidence 899999999999999999 8999 99999986 7 67 99999999999999999999999999999999999999999
Q ss_pred HHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHHhCCCCCeeEEEeEeeccccC
Q 027743 138 ELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRKQKQ 217 (219)
Q Consensus 138 ~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~Lrlde~VLR~liVKv~k~k~ 217 (219)
++|+++||+|+++++||+|+|||+|+|++|||.+++|++|+|++|+|+++|++++||++.||+|++||||+++|+++.||
T Consensus 89 ~iI~~~GG~I~~ve~WG~RrLAY~IkK~~kgg~~~~h~eG~Yvlm~F~a~p~~I~ELeR~Lride~VLR~liVK~d~~k~ 168 (168)
T 3bbn_F 89 ELLVAGGAMYVEVFNRGVIPLAYSIKRKNKAGETNNYLDGIYLLFTYFTKPESISPLEAALVTDDDVIRSSSFKIRKRKY 168 (168)
T ss_dssp HHHTTTSCEEEEEEEEEECCCSSCTTSCSSSCSSCCCCCCEEEEEEEEECTTSSHHHHHHHHTSSCCSEEECCBCCSCCC
T ss_pred HHHHHCCCEEEEEEecccccccceeccCcccccccccceEEEEEEEEEeCHHHHHHHHHHhcCCcCeeEEEEEecccccC
Confidence 99999999999999999999999999999988999999999999999999999999999999999999999999999886
No 2
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=99.98 E-value=2.1e-32 Score=210.67 Aligned_cols=95 Identities=24% Similarity=0.378 Sum_probs=93.0
Q ss_pred CCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhh
Q 027743 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPES 190 (219)
Q Consensus 111 Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~a 190 (219)
||.||+|+|++|++++++++++++++.++|.++||+|+++++||+|+|||+|+|++ +|+|++|+|+|+|++
T Consensus 1 M~~YE~~~Il~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~---------~G~Y~l~~f~a~~~~ 71 (101)
T 1cqm_A 1 MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDP---------QGYFLWYQVEMPEDR 71 (101)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEE---------EEEEEEEEEEECHHH
T ss_pred CCceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCC---------EEEEEEEEEEeChHH
Confidence 89999999999999999999999999999999999999999999999999999986 799999999999999
Q ss_pred HHHHHHHhCCCCCeeEEEeEeecc
Q 027743 191 IEALERTMKADDDVIRSSSFKVRK 214 (219)
Q Consensus 191 IkELEr~Lrlde~VLR~liVKv~k 214 (219)
++||++.||+|++||||+++|+++
T Consensus 72 i~eler~lr~~~~VlR~l~vk~~~ 95 (101)
T 1cqm_A 72 VNDLARELRIRDNVRRVMVVKSQE 95 (101)
T ss_dssp HHHHHHHHHTSTTEEEEEEEECSS
T ss_pred HHHHHHHhcCCcceEEEEEEEecc
Confidence 999999999999999999999985
No 3
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=99.97 E-value=7.9e-32 Score=210.69 Aligned_cols=98 Identities=31% Similarity=0.505 Sum_probs=94.7
Q ss_pred CCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEc-Ch
Q 027743 110 GLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFT-KP 188 (219)
Q Consensus 110 ~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a-~P 188 (219)
.|+.||+|+|++|++++++++++++++.++|.++||+|+++++||.|+|||+|+|++ +|+|++++|+| +|
T Consensus 6 ~M~~YE~~~Il~p~l~~e~~~~~v~~~~~~i~~~Gg~i~~~e~wG~R~LAY~I~K~~---------~G~Y~l~~f~a~~~ 76 (110)
T 2j5a_A 6 TLRYYETVFAVKPTLSEEEMKKKFEQVKEFIKQKGGEILYEEDWGMRQLAYPIQKFN---------NARYFLVQFKTENP 76 (110)
T ss_dssp SCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEEECSSCSSSCS---------EEEEEEEEEEESCT
T ss_pred CCCcceEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCC---------EEEEEEEEEEeCCH
Confidence 499999999999999999999999999999999999999999999999999999987 79999999999 99
Q ss_pred hhHHHHHHHhCCCCCeeEEEeEeecccc
Q 027743 189 ESIEALERTMKADDDVIRSSSFKVRKQK 216 (219)
Q Consensus 189 ~aIkELEr~Lrlde~VLR~liVKv~k~k 216 (219)
++++||++.||+|++||||+++|+++.+
T Consensus 77 ~~i~eler~lr~~e~VlR~livk~~~~~ 104 (110)
T 2j5a_A 77 QLPNELDFQLKIDEDVIRWLNIQIKESE 104 (110)
T ss_dssp THHHHHHHHHHHCTTEEEEEEEEECGGG
T ss_pred HHHHHHHHHhCCCcCeEEEEEEEccccc
Confidence 9999999999999999999999998754
No 4
>1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1
Probab=99.97 E-value=3.4e-31 Score=216.13 Aligned_cols=100 Identities=24% Similarity=0.422 Sum_probs=94.3
Q ss_pred CCCCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhC-CcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEE
Q 027743 107 CPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAG-GGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYF 185 (219)
Q Consensus 107 ~~~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~-GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~ 185 (219)
.|.+||.||+|+|++|++++++++++++++.++|.++ ||+|+++++||+|+|||+|+|++ +|+|++|+|+
T Consensus 14 ~~~~Mr~YE~~~Il~P~l~ee~v~~~ve~~~~~I~~~~GG~I~~ve~wG~R~LAY~I~K~~---------~G~Yvl~~f~ 84 (140)
T 1vmb_A 14 AYVKERIYESMFIIAPNVPEEERENLVERVKKIIEERVKGKIDKVERMGMRKFAYEIKKFN---------EGDYTVIYFR 84 (140)
T ss_dssp ---CCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEEEEEEEETTEE---------EEEEEEEEEE
T ss_pred cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeecCcccccccCCCC---------EEEEEEEEEE
Confidence 5789999999999999999999999999999999999 99999999999999999999986 7999999999
Q ss_pred cChhhHHHHHHHhCCCCCeeEEEeEeeccc
Q 027743 186 TKPESIEALERTMKADDDVIRSSSFKVRKQ 215 (219)
Q Consensus 186 a~P~aIkELEr~Lrlde~VLR~liVKv~k~ 215 (219)
++|++++||++.||+|++||||+++|+++.
T Consensus 85 a~~~~i~ELer~lri~e~VLR~livK~~~~ 114 (140)
T 1vmb_A 85 CDGQNLQELENFYRVTPEIIRWQTFRRFDL 114 (140)
T ss_dssp ECSSSTHHHHHHHHTCTTEEEEEEEECHHH
T ss_pred ECHHHHHHHHHHhcCCcceeEEEEEEeccc
Confidence 999999999999999999999999998753
No 5
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=99.97 E-value=4.7e-33 Score=213.88 Aligned_cols=97 Identities=26% Similarity=0.540 Sum_probs=93.1
Q ss_pred CCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcCh
Q 027743 109 PGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKP 188 (219)
Q Consensus 109 ~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P 188 (219)
-+||.||+|+|++|++++++++++++++.++|+++||+|+++++||.|+|||+|+|++ +|+|++++|+|+|
T Consensus 2 ~~M~~YE~~~Il~p~~~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~---------~G~Y~l~~f~a~~ 72 (99)
T 3r3t_A 2 NAMRKYEIMYIIRPGVEEEAQKALVERFAGVLTNNGAEIINTKEWGKRRLAYEINDLR---------EGFYMILNVNANA 72 (99)
T ss_dssp -CCCCCCCCCCCCTTSCHHHHHHHHHHHHHHHHTTTCCCCCCCCCCSCCCCCCCCCCC---------CSCCCCCCCCCCH
T ss_pred CCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEeeccccCcCcCCCC---------EEEEEEEEEEeCH
Confidence 3699999999999999999999999999999999999999999999999999999987 6899999999999
Q ss_pred hhHHHHHHHhCCCCCeeEEEeEeecc
Q 027743 189 ESIEALERTMKADDDVIRSSSFKVRK 214 (219)
Q Consensus 189 ~aIkELEr~Lrlde~VLR~liVKv~k 214 (219)
++++||++.||+|++||||+++|+++
T Consensus 73 ~~i~eler~lr~~~~VlR~livk~~~ 98 (99)
T 3r3t_A 73 EAINEFDRLAKINEDILRHIVVKEEE 98 (99)
T ss_dssp HHHHHHHHHHHHCTTCCCCCCCCCC-
T ss_pred HHHHHHHHHhcCCCCeEEEEEEEecC
Confidence 99999999999999999999999987
No 6
>3r8n_F 30S ribosomal protein S6; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_F 3fih_F* 3iy8_F 3j18_F* 2wwl_F 3oar_F 3oaq_F 3ofb_F 3ofa_F 3ofp_F 3ofx_F 3ofy_F 3ofo_F 3r8o_F 4a2i_F 4gd1_F 4gd2_F 2gy9_F 2gyb_F
Probab=99.97 E-value=6.2e-32 Score=207.96 Aligned_cols=95 Identities=27% Similarity=0.484 Sum_probs=91.8
Q ss_pred CCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhh
Q 027743 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPES 190 (219)
Q Consensus 111 Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~a 190 (219)
||+||+|+|++|+++ ++++++++++.++|+++||+|+++++||.|+|||+|+|++ +|+|++|+|+|+|++
T Consensus 1 M~~YE~~~Il~p~~~-e~~~~~~~~~~~~i~~~gg~i~~~e~wG~r~LAY~I~k~~---------~G~Y~l~~f~a~~~~ 70 (100)
T 3r8n_F 1 MRHYEIVFMVHPDQS-EQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLH---------KAHYVLMNVEAPQEV 70 (100)
T ss_dssp CEEECCCCEECGGGT-THHHHHHHHHHHHHHTTTCBCCCCEEEEEECCSSCTTSCS---------CEEEEECCEEECTTT
T ss_pred CCceEEEEEECCCch-HHHHHHHHHHHHHHHHCCCEEEEEEeeecccCCeEcCCCC---------EEEEEEEEEEeChHH
Confidence 899999999999997 6999999999999999999999999999999999999987 699999999999999
Q ss_pred HHHHHHHhCCCCCeeEEEeEeeccc
Q 027743 191 IEALERTMKADDDVIRSSSFKVRKQ 215 (219)
Q Consensus 191 IkELEr~Lrlde~VLR~liVKv~k~ 215 (219)
++||++.||+|++||||+++|+++.
T Consensus 71 i~eler~lr~~~~VlR~livk~~~~ 95 (100)
T 3r8n_F 71 IDELETTFRFNDAVIRSMVMRTKHA 95 (100)
T ss_dssp THHHHHHHHHCTTEEECCCCCCSSC
T ss_pred HHHHHHHhcCCCCeEEEEEEEeCcc
Confidence 9999999999999999999999863
No 7
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ...
Probab=99.96 E-value=2.9e-30 Score=209.39 Aligned_cols=94 Identities=28% Similarity=0.490 Sum_probs=91.5
Q ss_pred CCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhh
Q 027743 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPES 190 (219)
Q Consensus 111 Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~a 190 (219)
||+||+|+|++|+++ ++++++++++.++|.++||+|+++++||.|+|||+|+|++ +|+|++|+|+|+|++
T Consensus 1 Mr~YE~~~Il~P~~~-e~v~~~ve~~~~~I~~~GG~I~~ve~wG~R~LAY~I~K~~---------~G~Y~l~~f~a~~~~ 70 (135)
T 3i1m_F 1 MRHYEIVFMVHPDQS-EQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLH---------KAHYVLMNVEAPQEV 70 (135)
T ss_dssp CCEECBEEEECSTTT-TSHHHHHHHHHHHHHHTTCEECCCEEEEEECCSSCTTSSS---------CEEEEECCEECCTTH
T ss_pred CCceEEEEEECCCch-HHHHHHHHHHHHHHHHCCCEEEEEEeeccccCceEcCCCC---------eEEEEEEEEEeCHHH
Confidence 899999999999998 7999999999999999999999999999999999999987 699999999999999
Q ss_pred HHHHHHHhCCCCCeeEEEeEeecc
Q 027743 191 IEALERTMKADDDVIRSSSFKVRK 214 (219)
Q Consensus 191 IkELEr~Lrlde~VLR~liVKv~k 214 (219)
+++|++.||+|++||||+++|+++
T Consensus 71 i~ELer~lri~e~VLR~livk~d~ 94 (135)
T 3i1m_F 71 IDELETTFRFNDAVIRSMVMRTKH 94 (135)
T ss_dssp HHHHHHHHHHCSSEESCCBCCCSS
T ss_pred HHHHHHHhcCCCCeEEEEEEEecc
Confidence 999999999999999999999886
No 8
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=99.66 E-value=2.8e-17 Score=126.54 Aligned_cols=55 Identities=25% Similarity=0.316 Sum_probs=53.9
Q ss_pred CCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccccccccccc
Q 027743 110 GLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRK 164 (219)
Q Consensus 110 ~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK 164 (219)
+|++||+|+|++|++++++++++++++.++|+++||+|.++++||+|+|||+|+|
T Consensus 42 ~Mr~YE~m~Il~P~l~ee~~~~~ve~~~~iI~~~gG~i~~ve~WG~R~LAY~I~K 96 (96)
T 2kjw_A 42 TPGRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAK 96 (96)
T ss_dssp SSSCEEEEEECCSSCCHHHHHHHHHHHHHHHHHHTCCCSCCEECCCCCCCCSCCC
T ss_pred hhhhhheeeeeCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccccccccccCCC
Confidence 4999999999999999999999999999999999999999999999999999987
No 9
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=99.11 E-value=3.2e-11 Score=89.21 Aligned_cols=40 Identities=15% Similarity=0.218 Sum_probs=38.0
Q ss_pred eeEEEEEEEEEcChhhHHHHHHHhCCCCCeeEEEeEeecc
Q 027743 175 LDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRK 214 (219)
Q Consensus 175 ~eG~Yvlm~F~a~P~aIkELEr~Lrlde~VLR~liVKv~k 214 (219)
.+|+|++++|.|+|++++|||+.||+||+|||||++|.++
T Consensus 3 ~~G~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~ 42 (77)
T 3zzp_A 3 PQGYTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTT 42 (77)
T ss_dssp -CTTEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSS
T ss_pred ceEEEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccC
Confidence 3699999999999999999999999999999999999986
No 10
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=98.82 E-value=5.8e-10 Score=85.70 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=37.7
Q ss_pred eeEEEEEEEEEcChhhHHHHHHHhCCCCCeeEEEeEeec
Q 027743 175 LDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVR 213 (219)
Q Consensus 175 ~eG~Yvlm~F~a~P~aIkELEr~Lrlde~VLR~liVKv~ 213 (219)
.+|||++++|+|+|++++|||+.||++|+|||++++|++
T Consensus 3 ~~g~Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e 41 (96)
T 2kjw_A 3 PQGYFLWYQVEMPEDRVNDLARELRIRDNVRRVMVVAST 41 (96)
T ss_dssp TSCCCEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECS
T ss_pred ceEEEEEEEeecChhHHHHHHHHhccchhhhhhhheehh
Confidence 369999999999999999999999999999999999998
No 11
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=98.25 E-value=9.1e-07 Score=65.22 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=34.9
Q ss_pred CCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCc
Q 027743 109 PGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGG 145 (219)
Q Consensus 109 ~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG 145 (219)
..+|.||+|+|++|++++++++++++++..+|+++||
T Consensus 41 d~~r~YE~m~Il~P~l~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 41 TTPGRYEVNIVLNPNLDQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp SSTTEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCceEEEEEECCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 4578999999999999999999999999999999987
No 12
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=77.20 E-value=1.2 Score=35.58 Aligned_cols=90 Identities=22% Similarity=0.334 Sum_probs=59.3
Q ss_pred CCCCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEE----
Q 027743 107 CPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLF---- 182 (219)
Q Consensus 107 ~~~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm---- 182 (219)
.|-+.+.||++--| |+++++++.+ ++.-+|.+ |=+..+|.= ....+|+-+... .-|++|+|+.|
T Consensus 5 ~p~~~~~~~tfSyL-P~lt~eqI~k---QI~Yll~q--Gw~p~lEf~-d~~~~~R~~~~~-----~~~~~~~yW~mWkLP 72 (128)
T 1wdd_S 5 PIEGIKKFETLSYL-PPLTVEDLLK---QIEYLLRS--KWVPCLEFS-KVGFVYRENHRS-----PGYYDGRYWTMWKLP 72 (128)
T ss_dssp CSSSCCCCSTTTTS-SCCCHHHHHH---HHHHHHHT--TCEEEEEEE-SCCSCBCSSCCS-----TTCCBSCCCEEESCC
T ss_pred CCCCCccccccccC-CCCCHHHHHH---HHHHHHHC--CCeeeEEec-CCCceeeccCCC-----CCcccCCcccccCcc
Confidence 35677899995544 7799987765 77777775 345556554 444455544333 44788999987
Q ss_pred EEEcC--hhhHHHHHHHhC-CCCCeeEEE
Q 027743 183 TYFTK--PESIEALERTMK-ADDDVIRSS 208 (219)
Q Consensus 183 ~F~a~--P~aIkELEr~Lr-lde~VLR~l 208 (219)
-|++. .++++||++-.+ .-+.-||..
T Consensus 73 mFg~td~~~Vl~El~~C~k~~P~~YVRli 101 (128)
T 1wdd_S 73 MFGCTDATQVLKELEEAKKAYPDAFVRII 101 (128)
T ss_dssp CTTCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CccCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 46664 789999999774 334444543
No 13
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=73.99 E-value=1.6 Score=33.95 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=54.8
Q ss_pred CCCCCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEE---
Q 027743 106 QCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLF--- 182 (219)
Q Consensus 106 ~~~~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm--- 182 (219)
|-+++|+.||++--| |.++++++.+ ++.-+|.+ |=+..+|.=..++ .+++|+.|
T Consensus 3 ~~~~~~~~~etfSyL-P~lt~eqI~k---QI~Yll~q--Gw~p~lEf~d~~~-----------------~~~~yW~mwkl 59 (109)
T 1rbl_M 3 KTLPKERRFETFSYL-PPLSDRQIAA---QIEYMIEQ--GFHPLIEFNEHSN-----------------PEEFYWTMWKL 59 (109)
T ss_dssp CCCCCCCCCSTTTTS-SCCCHHHHHH---HHHHHHHH--TCEEEEEEESCCC-----------------TTCCCCEECSS
T ss_pred ccCCCcccccccccC-CCCCHHHHHH---HHHHHHHC--CCEEEEEeccCcc-----------------ccccEEeeccc
Confidence 557899999995555 7799988765 77777776 3455665433222 24678887
Q ss_pred -EEEcC--hhhHHHHHHHhC-CCCCeeEEEe
Q 027743 183 -TYFTK--PESIEALERTMK-ADDDVIRSSS 209 (219)
Q Consensus 183 -~F~a~--P~aIkELEr~Lr-lde~VLR~li 209 (219)
-|++. .+++.||++-++ .-+.-+|..-
T Consensus 60 Pmf~~~d~~~Vl~Ele~C~k~~p~~yVRlig 90 (109)
T 1rbl_M 60 PLFACAAPQQVLDEVRECRSEYGDCYIRVAG 90 (109)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCcCCCCHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 67774 789999999774 3444555543
No 14
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=56.33 E-value=4.7 Score=32.71 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=59.6
Q ss_pred CCCCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccc--cCCCCceeeEEEEEE--
Q 027743 107 CPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNK--AGESNTYLDGIYLLF-- 182 (219)
Q Consensus 107 ~~~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~k--a~~~~~~~eG~Yvlm-- 182 (219)
.|-+.+.||++--| |+++++++.+ ++.-+|.+ |=+..+|.= ...-+|.-+...- ++-..-|++|+|+.|
T Consensus 5 ~p~~~~~~etfSyL-P~lt~eqI~k---QI~YlL~q--Gw~p~lEf~-d~~~~~r~~~~~~~~~~~~~~yyd~~YW~mWk 77 (140)
T 1gk8_I 5 TPVNNKMFETFSYL-PPLTDEQIAA---QVDYIVAN--GWIPCLEFA-EADKAYVSNESAIRFGSVSCLYYDNRYWTMWK 77 (140)
T ss_dssp CCSSCCCCSTTTTS-SCCCHHHHHH---HHHHHHHT--TCEEEEEEE-CGGGTSCBCGGGGGCSSCCTTCCBTSSCEEES
T ss_pred CCcCCceecccccC-CCCCHHHHHH---HHHHHHHC--CCEeeEEec-cCCcceecccccccccccCCCcCcCCeeeeCC
Confidence 35678899995555 7799988765 77777754 445666665 4445664330000 011245788888886
Q ss_pred --EEEc--ChhhHHHHHHHhC-CCCCeeEEE
Q 027743 183 --TYFT--KPESIEALERTMK-ADDDVIRSS 208 (219)
Q Consensus 183 --~F~a--~P~aIkELEr~Lr-lde~VLR~l 208 (219)
-|.+ ..++++||++-.+ .-+.-+|..
T Consensus 78 LPmFg~td~~qVl~El~~C~k~~P~~YVRli 108 (140)
T 1gk8_I 78 LPMFGCRDPMQVLREIVACTKAFPDAYVRLV 108 (140)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred cCCcCCCCHHHHHHHHHHHHHHCCCCeEEEE
Confidence 4666 4789999999774 334455544
No 15
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=54.40 E-value=31 Score=25.29 Aligned_cols=76 Identities=16% Similarity=0.271 Sum_probs=48.8
Q ss_pred CCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccccccc-ccccccccCCCCceeeEEEEEEEEEcC
Q 027743 109 PGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAY-SIRKRNKAGESNTYLDGIYLLFTYFTK 187 (219)
Q Consensus 109 ~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAY-pIkK~~ka~~~~~~~eG~Yvlm~F~a~ 187 (219)
.||-.+++.+-++|.+-+.+-+++.. . ...|-| .++.-+ .|.|+.+..++.
T Consensus 3 ~Mm~~~~V~V~lK~gVlDPqG~av~~----a---------------l~~LG~~~V~~VR---------~gK~~~l~~~~~ 54 (92)
T 2zw2_A 3 KMLYRVELIITNKEGVRDPEGETIQR----Y---------------VVSRFSDKIIETR---------AGKYLVFRVNSS 54 (92)
T ss_dssp -CEEEEEEEEEECTTSCCHHHHHHHH----H---------------THHHHCTTEEEEE---------EEEEEEEEEECS
T ss_pred CCcEEEEEEEEECCCCcCcHHHHHHH----H---------------HHHcCCCChhheE---------EEEEEEEEecCC
Confidence 34557888889999988877664442 2 222333 244443 689999999875
Q ss_pred -----hhhHHHHHHHhCCCCCeeEEEeEee
Q 027743 188 -----PESIEALERTMKADDDVIRSSSFKV 212 (219)
Q Consensus 188 -----P~aIkELEr~Lrlde~VLR~liVKv 212 (219)
.+.++++-+.||+-+.||-...+.+
T Consensus 55 ~~~~a~~~v~~~~~~LrLaNpVie~y~~~~ 84 (92)
T 2zw2_A 55 SQQEATELVKKLADEMRLYNPIVHKIEIRA 84 (92)
T ss_dssp SHHHHHHHHHHHHHHTTSSCTTTEEEEEEE
T ss_pred CHHHHHHHHHHHHhhccccCcceeEEEEEE
Confidence 3567788889966665655444443
No 16
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=52.68 E-value=24 Score=25.42 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=47.0
Q ss_pred CCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcC--
Q 027743 110 GLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTK-- 187 (219)
Q Consensus 110 ~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~-- 187 (219)
||-.++..+-++|.+-|.+-+++...+ . .|.|.++.-+ .|.|+.+..++.
T Consensus 1 mm~~~~V~V~lK~gVlDpqG~av~~al----~---------------~LG~~v~~VR---------~gK~~~l~~~~~~~ 52 (85)
T 1gtd_A 1 MKFMVEVRIRLKKGMLNPEAATIERAL----A---------------LLGYEVEDTD---------TTDVITFTMDEDSL 52 (85)
T ss_dssp -CEEEEEEEEECTTSCCHHHHHHHHHH----H---------------HHTCCCEEEE---------EEEEEEEEECCSCH
T ss_pred CCeEEEEEEEECCCCcCcHHHHHHHHH----H---------------HcCCChheEE---------EEEEEEEEecCCCH
Confidence 466788889999998888776555433 2 2223344433 689999999876
Q ss_pred ---hhhHHHHHHHhCCCCCeeEE
Q 027743 188 ---PESIEALERTMKADDDVIRS 207 (219)
Q Consensus 188 ---P~aIkELEr~Lrlde~VLR~ 207 (219)
.+.++++-+.|-.|+-|=.|
T Consensus 53 ~~a~~~v~~~~~~LLaNpVie~~ 75 (85)
T 1gtd_A 53 EAVEREVEDMCQRLLCNPVIHDY 75 (85)
T ss_dssp HHHHHHHHHHHHHTTCCTTTEEE
T ss_pred HHHHHHHHHHHHHhcCCCcceEE
Confidence 46678888888666654443
No 17
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=44.92 E-value=74 Score=23.69 Aligned_cols=72 Identities=10% Similarity=0.058 Sum_probs=49.8
Q ss_pred CCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccc-cccccccCCCCceeeEEEEEEEEEcC-
Q 027743 110 GLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYS-IRKRNKAGESNTYLDGIYLLFTYFTK- 187 (219)
Q Consensus 110 ~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYp-IkK~~ka~~~~~~~eG~Yvlm~F~a~- 187 (219)
.|-..+..+-++|.+-|.+-+++.. .+...| |. ++.-+ .|.|+.+..+++
T Consensus 14 ~~~~~~V~V~lKpgVlDPqG~aV~~----aL~~LG---------------~~~V~~VR---------~GK~~el~~~~~~ 65 (94)
T 1vq3_A 14 PLFKFAIDVQYRSNVRDPRGETIER----VLREEK---------------GLPVKKLR---------LGKSIHLEVEAEN 65 (94)
T ss_dssp CEEEEEEEEEECTTSCCHHHHHHHH----HHHHTT---------------CCCEEEEE---------EEEEEEEEEECSS
T ss_pred ceEEEEEEEEECCCCcCcHHHHHHH----HHHHcC---------------CCccceee---------eeeEEEEEecCCC
Confidence 3557889999999988888776553 333333 32 33333 699999999986
Q ss_pred ----hhhHHHHHHHhCCCCCeeEEEe
Q 027743 188 ----PESIEALERTMKADDDVIRSSS 209 (219)
Q Consensus 188 ----P~aIkELEr~Lrlde~VLR~li 209 (219)
.+.+++|-+.|-.|+-|=.|.+
T Consensus 66 ~~~a~~~v~~mc~kLLaNpVIE~y~i 91 (94)
T 1vq3_A 66 KEKAYEIVKKACEELLVNPVVEEYEV 91 (94)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEEE
Confidence 5678888889977776655443
No 18
>3j20_L 30S ribosomal protein S10P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.54 E-value=87 Score=23.38 Aligned_cols=79 Identities=10% Similarity=0.038 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHHHhhCCcEEEEEEeeccccccccccccccc----CCCCceeeEEEEEEEEEcChhhHHHHHHHhCC
Q 027743 125 SEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKA----GESNTYLDGIYLLFTYFTKPESIEALERTMKA 200 (219)
Q Consensus 125 seeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka----~~~~~~~eG~Yvlm~F~a~P~aIkELEr~Lrl 200 (219)
+...++...+.+.+.....|..+..--.+=.+++-|.+.|---+ .-.++...=|+-++.++++++++++|.+ +.+
T Consensus 12 d~~~Ld~~~~~i~~~ak~~g~~v~GpiplPtk~~~~TvlrSPhv~gkksreqfE~r~hkRlIdi~~~~~~v~~l~~-~~l 90 (102)
T 3j20_L 12 NVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDIEADERAMRQIMR-IRV 90 (102)
T ss_dssp SHHHHHHHHHHHHHHHHSSSCEEEEEEEEEEEEECCEEECCSSCCSSCCEEECCEEEEEEEEEEEECHHHHHHHTT-SCC
T ss_pred CHHHHHHHHHHHHHHHHHhCCcccccccCCCcceEEEEEecCCCCCCcchhheEEEEEEEEEEEeCCHHHHHHHhc-CcC
Confidence 46678889999999999999999887777777777877664211 1123344557778888999999999864 666
Q ss_pred CCCe
Q 027743 201 DDDV 204 (219)
Q Consensus 201 de~V 204 (219)
.+.|
T Consensus 91 p~GV 94 (102)
T 3j20_L 91 PEDV 94 (102)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6665
No 19
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=39.85 E-value=84 Score=21.77 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=42.8
Q ss_pred CCcccEEEEe--CCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcCh
Q 027743 111 LRQYETMMVL--RPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKP 188 (219)
Q Consensus 111 Mr~YElm~IL--rP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P 188 (219)
|..--.++|- .++++++++.+++..+ |.|..+.-. + | |..+.|....
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~--------G~i~~v~~~----------~------------~-~afV~f~~~~ 56 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQF--------GKLERVKKL----------K------------D-YAFIHFDERD 56 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHH--------SCEEEEEEC----------S------------S-CEEEEESSHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc--------CCEEEEEEE----------C------------C-EEEEEeCCHH
Confidence 3344556664 5678888777666554 356665422 1 1 7788898887
Q ss_pred hhHHHHHH--HhCCCCCeeEEEeEee
Q 027743 189 ESIEALER--TMKADDDVIRSSSFKV 212 (219)
Q Consensus 189 ~aIkELEr--~Lrlde~VLR~liVKv 212 (219)
++.+.|+. ...++...|+...-+.
T Consensus 57 ~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 57 GAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp HHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred HHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 77777764 2345666665554443
No 20
>3bbn_J Ribosomal protein S10; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=37.74 E-value=75 Score=26.89 Aligned_cols=88 Identities=8% Similarity=-0.001 Sum_probs=56.0
Q ss_pred CcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccc------cccccCCCCceeeEEEEEEEEE
Q 027743 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIR------KRNKAGESNTYLDGIYLLFTYF 185 (219)
Q Consensus 112 r~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIk------K~~ka~~~~~~~eG~Yvlm~F~ 185 (219)
...-+-+.++. .+...++...+++.+...+.|..|..--.+=.+++-|.+. |+.+ .++...=|.-++.+.
T Consensus 97 ~~~kIRI~LkS-~D~k~Ld~~~~~Iv~~Ak~tg~~V~GPIpLPTK~~r~TVLRSPHv~KKSR---EQFEmRtHKRlIdI~ 172 (197)
T 3bbn_J 97 PKQKIRIKLRS-YWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDAR---FHFEIRTHQRLIDIL 172 (197)
T ss_dssp --CCSEEEEEE-SCHHHHHHHTTHHHHTTTTTSSCEEEEEECCCEEEEECCCCSSSSCCSSC---CCEEEEEEEEEEEES
T ss_pred cCcEEEEEEEe-CCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCeeEEEEEeeCCCCCCCcc---eeEEEEEEEEEEEEE
Confidence 44556677776 3566788889999999998898887655544444444443 3322 244455667778886
Q ss_pred c-ChhhHHHHHHHhCCCCCe
Q 027743 186 T-KPESIEALERTMKADDDV 204 (219)
Q Consensus 186 a-~P~aIkELEr~Lrlde~V 204 (219)
. +++.+++|.+ +.+.+.|
T Consensus 173 ~~t~~tvd~lm~-l~LP~GV 191 (197)
T 3bbn_J 173 YPTAQTIDSLMQ-LDLPAGV 191 (197)
T ss_dssp SCCHHHHHHHTT-CCCCSSC
T ss_pred CCCHHHHHHHHc-CcCCCCC
Confidence 4 4678888764 5555554
No 21
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=35.89 E-value=67 Score=22.80 Aligned_cols=68 Identities=9% Similarity=0.114 Sum_probs=45.0
Q ss_pred CcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccccccc-ccccccccCCCCceeeEEEEEEEEEcC---
Q 027743 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAY-SIRKRNKAGESNTYLDGIYLLFTYFTK--- 187 (219)
Q Consensus 112 r~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAY-pIkK~~ka~~~~~~~eG~Yvlm~F~a~--- 187 (219)
-.++..+-++|.+-+.+-+++...+ +.|.| .++.-+ .|.|+.+..++.
T Consensus 2 ~~~~V~V~lK~gvlDpqG~av~~al-------------------~~lG~~~v~~Vr---------~gk~~~l~~~~~~~~ 53 (83)
T 2yx5_A 2 YKATVIIKLKKGVLNPEGRTIQRAL-------------------NFLGFNNVKEVQ---------TYKMIDIIMEGENEE 53 (83)
T ss_dssp EEEEEEEEECTTCCCHHHHHHHHHH-------------------HHTTCTTCCCCC---------CCEEEEEEEC-CCHH
T ss_pred eEEEEEEEECCCCcCcHHHHHHHHH-------------------HHcCCCChhhEE---------EEEEEEEEecCCCHH
Confidence 3577888889998887766544322 23445 455554 589999998876
Q ss_pred --hhhHHHHHHHhCCCCCeeEE
Q 027743 188 --PESIEALERTMKADDDVIRS 207 (219)
Q Consensus 188 --P~aIkELEr~Lrlde~VLR~ 207 (219)
.+.+.++-+.|-.|+-|=.|
T Consensus 54 ~a~~~v~~~~~~LLaNpVie~y 75 (83)
T 2yx5_A 54 KVKEEVEEMCKKLLANPVIHDY 75 (83)
T ss_dssp HHHHHHHHHHHHTTCCTTTEEE
T ss_pred HHHHHHHHHHHHhccCCcceEE
Confidence 35677888888667654443
No 22
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=35.81 E-value=19 Score=27.89 Aligned_cols=82 Identities=15% Similarity=0.109 Sum_probs=54.6
Q ss_pred CCCCCCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEE--
Q 027743 105 PQCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLF-- 182 (219)
Q Consensus 105 ~~~~~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm-- 182 (219)
.|-.++.+.||++--| |.++++++.+ ++.-+|.+ |=+..+|.=..++ .+++|+.|
T Consensus 4 ~~~~~~~~~~etfSyL-P~lt~eqI~k---QV~Yll~q--Gw~p~iEf~d~~~-----------------~~~~yW~mwk 60 (110)
T 1svd_M 4 MQDYKQSLKYETFSYL-PPMNAERIRA---QIKYAIAQ--GWSPGIEHVEVKN-----------------SMNQYWYMWK 60 (110)
T ss_dssp CCCCCCCCCCSTTTTS-CCCCHHHHHH---HHHHHHHT--TCEEEEEEECGGG-----------------TTCSCCEEES
T ss_pred ccccCCCccccccccC-CCCCHHHHHH---HHHHHHHC--CCeeEEEeccCCc-----------------cCCcEEeecc
Confidence 4555788899995555 7799988765 77777775 4556666543332 23578877
Q ss_pred --EEEcC--hhhHHHHHHHhC-CCCCeeEEEe
Q 027743 183 --TYFTK--PESIEALERTMK-ADDDVIRSSS 209 (219)
Q Consensus 183 --~F~a~--P~aIkELEr~Lr-lde~VLR~li 209 (219)
-|++. .+++.||++-++ .-+.-+|..-
T Consensus 61 lPmf~~~d~~~Vl~El~~C~k~~p~~yVRlig 92 (110)
T 1svd_M 61 LPFFGEQNVDNVLAEIEACRSAYPTHQVKLVA 92 (110)
T ss_dssp CCCTTCCCHHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred cCCcCCCCHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 67774 789999999774 3444555543
No 23
>3dtz_A Putative chlorite dismutase TA0507; putatvie chlorite dismutase TA0507 thermoplasma acidophilum, structural genomics, PSI-2; HET: MSE; 1.81A {Thermoplasma acidophilum}
Probab=34.73 E-value=1.4e+02 Score=25.87 Aligned_cols=65 Identities=14% Similarity=0.171 Sum_probs=47.5
Q ss_pred EEEeCCC---CCHHHH--HHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhH
Q 027743 117 MMVLRPD---MSEDER--LALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESI 191 (219)
Q Consensus 117 m~ILrP~---lseeei--~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aI 191 (219)
++-++|. ++.+++ +++++.+.+++....+.|.--. |.+-++ ++.++++...-+++.+
T Consensus 30 ~~k~d~~W~~l~~~eR~~~~~~~e~~~~~~~~~~~i~~~~--------Ysglr~----------~aDlm~w~~~~~~~~L 91 (244)
T 3dtz_A 30 SYRLLEGKAYSDADTRSLDRMMRSIDEFFSANPGYINFHI--------YRSYRT----------DSDVIFWYSSRNPDLM 91 (244)
T ss_dssp EEEECSSCCCCHHHHHHHHHHHHHHHHHHHHCTTEEEEEE--------EEESST----------TCSEEEEEEESCHHHH
T ss_pred EEEechhhccCCHHHHHHHHHHHHHHHHHHhcCCceEEEE--------EEeeCC----------CccEEEEEeCCCHHHH
Confidence 3444565 778899 9999999998855555443222 334444 4799999999999999
Q ss_pred HHHHHHhC
Q 027743 192 EALERTMK 199 (219)
Q Consensus 192 kELEr~Lr 199 (219)
+++++.|+
T Consensus 92 q~~~~~l~ 99 (244)
T 3dtz_A 92 ILAKERVQ 99 (244)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999875
No 24
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.13 E-value=1.2e+02 Score=21.04 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=38.8
Q ss_pred EEEEe--CCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHH
Q 027743 116 TMMVL--RPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEA 193 (219)
Q Consensus 116 lm~IL--rP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkE 193 (219)
.++|- .++++++++.+ ++.+.| .|..+.-. ..++.+ -|..+.|....++.+.
T Consensus 24 ~l~V~nLp~~~t~~~l~~-------~F~~~G-~v~~~~i~--------~~~~~~----------g~afV~f~~~~~A~~A 77 (109)
T 1x4a_A 24 RIYVGNLPPDIRTKDIED-------VFYKYG-AIRDIDLK--------NRRGGP----------PFAFVEFEDPRDAEDA 77 (109)
T ss_dssp EEEEESCCTTCCHHHHHH-------HHGGGS-CEEEEEEC--------CSSSSS----------CCEEEEESCHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHH-------HHHhcC-CeEEEEEE--------ECCCCC----------cEEEEEECCHHHHHHH
Confidence 55564 46778876654 444444 56665441 112222 2778889888777777
Q ss_pred HHHH--hCCCCCeeEEEeEe
Q 027743 194 LERT--MKADDDVIRSSSFK 211 (219)
Q Consensus 194 LEr~--Lrlde~VLR~liVK 211 (219)
|+.. ..++...|+...-+
T Consensus 78 ~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 78 VYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp HHHHTTCEETTEECEEECCC
T ss_pred HHHcCCCEECCeEEEEEEcc
Confidence 7642 33455555544433
No 25
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=31.47 E-value=41 Score=27.26 Aligned_cols=47 Identities=15% Similarity=0.077 Sum_probs=41.6
Q ss_pred CCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccc
Q 027743 109 PGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVI 156 (219)
Q Consensus 109 ~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~R 156 (219)
+.|..++..+|-=|..+.+...+..++..++..++|+ +.-+|.||.-
T Consensus 23 ~~M~YVDGFv~pVP~ankeaY~~~A~~a~~vfke~GA-l~~vEcWgdD 69 (141)
T 2okq_A 23 NAMKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGA-LRIVECWASD 69 (141)
T ss_dssp HSCCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTTC-SEEEEEEEEE
T ss_pred CCCceEEEEEEECcHHHHHHHHHHHHHHHHHHHHhCC-eeeeeeeccc
Confidence 5688899999999999999999999999999988765 6899999875
No 26
>3nn1_A Chlorite dismutase; ferredoxin like fold, chlorite dismutation, periplasmatic, oxidoreductase; HET: HEM; 1.85A {Candidatus nitrospira defluvii} PDB: 3nn2_A* 3nn4_A* 3nn3_A*
Probab=31.43 E-value=65 Score=27.83 Aligned_cols=61 Identities=8% Similarity=0.122 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHHhCC
Q 027743 124 MSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKA 200 (219)
Q Consensus 124 lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~Lrl 200 (219)
+++++++++++.+.++|.+..++ ...=.|.|..++- ++.++++...-+++.++++++.|+.
T Consensus 31 l~~~eR~~~~~e~~~~l~~~~~~--------~~~~~Y~v~G~ra--------daDlm~w~~~~~~~~lq~~~~~f~~ 91 (241)
T 3nn1_A 31 LPGESRVISVAEVKGLVEQWSGK--------ILVESYLLRGLSD--------HADLMFRVHARTLSDTQQFLSAFMG 91 (241)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTT--------CEEEEEECTTTST--------TCCEEEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcccc--------eEEEEEEeecccC--------CCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 56889999999999999986553 2344688888751 5799999999999999999999976
No 27
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=31.23 E-value=32 Score=30.53 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=36.3
Q ss_pred CCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccccccc
Q 027743 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAY 160 (219)
Q Consensus 111 Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAY 160 (219)
..-.+.+-|-.++++.+++.++.+.+.+.+.+..|.|+ -.|...|+|
T Consensus 48 i~~~~~~~idS~~mt~~~w~~la~~I~~~~~~~dG~VI---tHGTDTmee 94 (326)
T 1nns_A 48 VKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKTDGFVI---THGTDTMEE 94 (326)
T ss_dssp EEEEEEEEECGGGCCHHHHHHHHHHHHHHGGGCSEEEE---ECCSSSHHH
T ss_pred EEEEEeccCCcccCCHHHHHHHHHHHHHHhhcCCcEEE---EcCchhHHH
Confidence 34455666777889999999999999999988766655 357777765
No 28
>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A
Probab=30.47 E-value=31 Score=30.65 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=50.4
Q ss_pred cccCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEee
Q 027743 74 FEGGGFGSDDDPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNR 153 (219)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venw 153 (219)
+-||=+++..+++...|+ .+. ..+-+-++-.......-.|.+-|-.++++.+++.++.+.+.+.+.+..|.|+ -.
T Consensus 7 ~TGGTIa~~~~~~g~~~~-~~~-~~ll~vp~l~~~~~i~~~~~~~idS~~mt~~~w~~la~~I~~~~~~~dG~VI---tH 81 (328)
T 1wls_A 7 GMGGTIASVKGERGYESA-LSV-SKILKLAGISSEAKIEARDLMNVDSTLIQPSDWERLAKEIEKEVWEYDGIVI---TH 81 (328)
T ss_dssp EEECGGGEECCTTSBEEC-CCH-HHHHHTTTTTSCSBCCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCSEEEE---EC
T ss_pred ecCcccccccCCCCCcCC-CCH-HHHHhCccccCCceEEEEEecCCCCCCCCHHHHHHHHHHHHHHhccCCeEEE---Ec
Confidence 446666665444444333 232 2222222222122344456666778889999999999999999987777765 36
Q ss_pred ccccccc
Q 027743 154 GVIPLAY 160 (219)
Q Consensus 154 G~RkLAY 160 (219)
|...|+|
T Consensus 82 GTDTmee 88 (328)
T 1wls_A 82 GTDTMAY 88 (328)
T ss_dssp CGGGHHH
T ss_pred CCchHHH
Confidence 7777765
No 29
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=28.87 E-value=1.1e+02 Score=21.69 Aligned_cols=68 Identities=12% Similarity=0.185 Sum_probs=44.2
Q ss_pred CcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccccccc-ccccccccCCCCceeeEEEEEEEEEcC---
Q 027743 112 RQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAY-SIRKRNKAGESNTYLDGIYLLFTYFTK--- 187 (219)
Q Consensus 112 r~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAY-pIkK~~ka~~~~~~~eG~Yvlm~F~a~--- 187 (219)
-.++..+-++|.+-|.+-+++. ..+.. |.| .++.-+ .|.|+.+..++.
T Consensus 2 ~~~~V~V~lK~gVlDpqG~av~----~al~~---------------LG~~~v~~VR---------~gK~~~l~~~~~~~~ 53 (84)
T 1t4a_A 2 YKVKVYVSLKESVLDPQGSAVQ----HALHS---------------MTYNEVQDVR---------IGKYMELTIEKSDRD 53 (84)
T ss_dssp EEEEEEEEECTTSCCHHHHHHH----HHHHH---------------TTCTTEEEEE---------EEEEEEEEECCCSSC
T ss_pred eEEEEEEEECCCCcCcHHHHHH----HHHHH---------------cCCCChhheE---------EEEEEEEEecCchHH
Confidence 3577888889998887765433 23333 333 344433 689999988875
Q ss_pred -hhhHHHHHHHhCCCCCeeEE
Q 027743 188 -PESIEALERTMKADDDVIRS 207 (219)
Q Consensus 188 -P~aIkELEr~Lrlde~VLR~ 207 (219)
.+.++++-+.|-.|+-|=.|
T Consensus 54 a~~~v~~~~~~LLaNpVie~y 74 (84)
T 1t4a_A 54 LDVLVKEMCEKLLANTVIEDY 74 (84)
T ss_dssp HHHHHHHHHHHTTCCTTTEEE
T ss_pred HHHHHHHHHHHhcCCCcceEE
Confidence 35678888888667654443
No 30
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=28.49 E-value=23 Score=29.61 Aligned_cols=71 Identities=8% Similarity=0.049 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEc----ChhhHHHHHHHhCCCC
Q 027743 127 DERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFT----KPESIEALERTMKADD 202 (219)
Q Consensus 127 eei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a----~P~aIkELEr~Lrlde 202 (219)
+.+.-+.+.+.++|.++| |..++.-|. +|-=+- |-.++.... +..++..+.+-+++++
T Consensus 121 ~Gv~~~~~~l~~~L~~~G--v~~i~~~G~---~FDP~~-------------HeAv~~~~~~~~~~~tVv~v~qkGY~l~d 182 (197)
T 1dkg_A 121 EDIELTLKSMLDVVRKFG--VEVIAETNV---PLDPNV-------------HQAIAMVESDDVAPGNVLGIMQKGYTLNG 182 (197)
T ss_dssp HHHHHHHHHHHHHHTTTT--EEEECCCSS---BCCTTS-------------EEEEEEEECSSSCTTBEEEEEECEEEETT
T ss_pred HHHHHHHHHHHHHHHHCC--CEEeCCCCC---CCCHHH-------------hheeeeecCCCCCcCeEEEEeeCCeeeCC
Confidence 356667788999999888 555666675 222222 333444432 3567777888899999
Q ss_pred CeeEEEeEeeccc
Q 027743 203 DVIRSSSFKVRKQ 215 (219)
Q Consensus 203 ~VLR~liVKv~k~ 215 (219)
.|||...|++.+.
T Consensus 183 RvLRpA~V~V~~~ 195 (197)
T 1dkg_A 183 RTIRAAMVTVAKA 195 (197)
T ss_dssp EEEECEEEEEEEC
T ss_pred EEecceEEEecCC
Confidence 9999999988753
No 31
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=28.11 E-value=68 Score=25.95 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=44.0
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccccccccccccc
Q 027743 117 MMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRN 166 (219)
Q Consensus 117 m~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ 166 (219)
+.|+...-+++-..++++...+.+.+.|..|.-+..=|--.|++-+++--
T Consensus 15 i~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la 64 (157)
T 2i0f_A 15 LLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFAL 64 (157)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHH
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHH
Confidence 77788889999999999999999999998888788889999999988643
No 32
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.47 E-value=90 Score=22.60 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHHhCCC
Q 027743 122 PDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKAD 201 (219)
Q Consensus 122 P~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~Lrld 201 (219)
++++++++.+ ++.+.| .|..+.-.| +.+ | |-.+.|....++.+.++....+.
T Consensus 27 ~~~te~~L~~-------~F~~~G-~V~~v~i~~----------~~r---------G-faFVeF~~~~~A~~Ai~~~~~~~ 78 (100)
T 2d9o_A 27 GGYSKDVLLR-------LLQKYG-EVLNLVLSS----------KKP---------G-TAVVEFATVKAAELAVQNEVGLV 78 (100)
T ss_dssp CSCCHHHHHH-------HHHTTS-CEEEEEEES----------SSS---------S-EEEEEESCHHHHHHHHHTCCBCS
T ss_pred CCCCHHHHHH-------HHHhcC-CEEEEEEcc----------CCC---------C-EEEEEECCHHHHHHHHHhcCCCC
Confidence 5677776554 445554 566665442 222 3 78889998888888888755566
Q ss_pred CCeeEEEeEeec
Q 027743 202 DDVIRSSSFKVR 213 (219)
Q Consensus 202 e~VLR~liVKv~ 213 (219)
...||....+-.
T Consensus 79 g~~l~V~~a~~~ 90 (100)
T 2d9o_A 79 DNPLKISWLEGQ 90 (100)
T ss_dssp SSBCEEECSSCC
T ss_pred CCeEEEEEccCC
Confidence 666766554433
No 33
>3u5c_U 40S ribosomal protein S20; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_J 3o30_N 3o2z_N 3u5g_U 1s1h_J 3jyv_J*
Probab=27.15 E-value=2.2e+02 Score=21.98 Aligned_cols=87 Identities=7% Similarity=-0.062 Sum_probs=63.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccccccccccccccc----CCCCceeeEEEEEEEEEcChhhH
Q 027743 116 TMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKA----GESNTYLDGIYLLFTYFTKPESI 191 (219)
Q Consensus 116 lm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka----~~~~~~~eG~Yvlm~F~a~P~aI 191 (219)
+-+-++. .+...++.....+.+...+.|..+..--.+=.+++-|.+.|---+ .-.++-..=|.-++.+.++++++
T Consensus 22 IrI~LkS-~d~~~Ld~~~~~I~~~ak~~g~~v~GPipLPtk~~r~TvlRSPhv~gKkSreqFE~RtHKRlIdI~~~~~~v 100 (121)
T 3u5c_U 22 IRITLTS-TKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQIV 100 (121)
T ss_dssp EEEEEEE-SCHHHHHHHHHHHHHHHHHTCCCEEEEEEEEEEEEEEEEESSSSSCSSCCEEEEEEEEEEEEEEECCCHHHH
T ss_pred EEEEEEE-CCHHHHHHHHHHHHHHHHHhCCeeecCcCCCCcceEEEEEcCCCCCCCcchhheEEEEEEEEEEecCCHHHH
Confidence 4555665 457788999999999999999999877777777777877664211 01133344577888888999999
Q ss_pred HHHHHHhCCCCCe
Q 027743 192 EALERTMKADDDV 204 (219)
Q Consensus 192 kELEr~Lrlde~V 204 (219)
.+|.+ +.+.+.|
T Consensus 101 ~~l~~-~~lp~GV 112 (121)
T 3u5c_U 101 KRITQ-ITIEPGV 112 (121)
T ss_dssp HHHHH-SSCCTTC
T ss_pred HHHHc-CcCCCCC
Confidence 98875 6676666
No 34
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=26.15 E-value=78 Score=24.05 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=27.3
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEE--eeccccccccccc
Q 027743 118 MVLRPDMSEDERLALTQKYEELLVAGGGMYVEVF--NRGVIPLAYSIRK 164 (219)
Q Consensus 118 ~ILrP~lseeei~~lik~l~~iI~k~GG~I~~ve--nwG~RkLAYpIkK 164 (219)
.|--.+++-+ .+.+.|++.||+|.+++ --|.+-.-+.|+.
T Consensus 53 tIEG~~idfd-------~I~~~IE~~Gg~IHSIDEVvaG~~ive~~~~~ 94 (96)
T 2x3d_A 53 IIEGTSLNFD-------DIRKMLEEEGCAIHSIDEVVSGNRIIEGKIKD 94 (96)
T ss_dssp EEEESSCCHH-------HHHHHHHHTTCEEEEEEEEEEESSCCCC----
T ss_pred EEEecCCCHH-------HHHHHHHHcCCeEEeeeeeeeccccccccccC
Confidence 3445567766 45678889999999999 4688888777764
No 35
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=25.60 E-value=1.3e+02 Score=21.61 Aligned_cols=67 Identities=9% Similarity=0.137 Sum_probs=42.5
Q ss_pred CCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcCh
Q 027743 109 PGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKP 188 (219)
Q Consensus 109 ~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P 188 (219)
.+|.-| .+.-++. ...+..++=.+....+|.+.||.+.-- | ....- ... + .-+.-+++.|..-.
T Consensus 1 ~~m~aY-~i~~~~v-~d~e~y~~Y~~~~~~~l~~~GG~~l~r---g-~~~~l--EG~-------~-~~~~~viieFps~~ 64 (94)
T 3lo3_A 1 SNATAY-IIVGLTP-KDAEKLQQYGARVASTLAKYSGEVLVK---G-SVEQL--HGK-------F-EHKAQVILEFPSRE 64 (94)
T ss_dssp CCCCEE-EEEEEEE-CCHHHHHHHHHHHHHHHHTTTCEEEEE---E-ECEEE--ESC-------C-CCSEEEEEEESSHH
T ss_pred CCccEE-EEEEEEE-CCHHHHHHHHHHHHHHHHHcCCEEEEE---c-ccccc--cCC-------C-CCCeEEEEECCCHH
Confidence 368888 3333443 357789999999999999999997753 3 22221 111 0 02477888887654
Q ss_pred hhH
Q 027743 189 ESI 191 (219)
Q Consensus 189 ~aI 191 (219)
.+.
T Consensus 65 aa~ 67 (94)
T 3lo3_A 65 DAY 67 (94)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 36
>1nxi_A Conserved hypothetical protein VC0424; structural genomics, AB sandwich, COG 3076, ATCC NO. 51394D, NESG target OP3, PSI; NMR {Vibrio cholerae} SCOP: d.58.47.1
Probab=24.85 E-value=1.7e+02 Score=22.57 Aligned_cols=44 Identities=9% Similarity=-0.076 Sum_probs=36.8
Q ss_pred CCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccc
Q 027743 110 GLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVI 156 (219)
Q Consensus 110 ~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~R 156 (219)
+-+.|++.++..-.++.+.|.+.+..+..+..+.||. .+-||.-
T Consensus 78 g~~~~~~~i~~~~~l~~~~I~~~~~~L~~lA~~~~G~---YDGWGt~ 121 (132)
T 1nxi_A 78 GNKLLCFDATMQSALDAKLIDEQVEKLVNLAEKFDII---YDGWGTY 121 (132)
T ss_dssp CSSBEEEEEEEEECSCHHHHHHHHHHHHHHHHHHTCE---EEEEEEC
T ss_pred CceeEEEEEEEeccCCHHHHHHHHHHHHHHHHHhCcE---eeCcceE
Confidence 3345998888888889999999999999999999995 5667753
No 37
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=24.43 E-value=1.6e+02 Score=25.58 Aligned_cols=66 Identities=6% Similarity=0.016 Sum_probs=42.4
Q ss_pred CCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeE-EEEEEEEEcC
Q 027743 109 PGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDG-IYLLFTYFTK 187 (219)
Q Consensus 109 ~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG-~Yvlm~F~a~ 187 (219)
.+|..|-+.++.. + ...++.++...|.++|+.|.++..... .. .| .++.+.|+.+
T Consensus 4 ~~~~~~vLtv~c~-D-----rpGIVa~Vs~~La~~g~NI~d~~q~~d--------~~----------~g~Ffmr~~~~~~ 59 (286)
T 3n0v_A 4 RAPDTWILTADCP-S-----MLGTVDVVTRYLFEQRCYVTEHHSFDD--------RQ----------SGRFFIRVEFRQP 59 (286)
T ss_dssp ---CCEEEEEEEE-C-----CTTHHHHHHHHHHHTTCEEEEEEEEEE--------TT----------TTEEEEEEEEECC
T ss_pred ccCCcEEEEEEeC-C-----CCCHHHHHHHHHHHCCCCeeeeeeecc--------CC----------CCeeEEEEEEecC
Confidence 4577787666664 2 456788999999999999999998741 11 12 3455667764
Q ss_pred h-hhHHHHHHHh
Q 027743 188 P-ESIEALERTM 198 (219)
Q Consensus 188 P-~aIkELEr~L 198 (219)
. ..+.+|++.|
T Consensus 60 ~~~~~~~L~~~f 71 (286)
T 3n0v_A 60 DDFDEAGFRAGL 71 (286)
T ss_dssp SSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 3 3456666554
No 38
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=22.61 E-value=2e+02 Score=20.07 Aligned_cols=32 Identities=6% Similarity=0.107 Sum_probs=20.0
Q ss_pred EEEEEEEEcChhhHHHHHH--HhCCCCCeeEEEe
Q 027743 178 IYLLFTYFTKPESIEALER--TMKADDDVIRSSS 209 (219)
Q Consensus 178 ~Yvlm~F~a~P~aIkELEr--~Lrlde~VLR~li 209 (219)
-|.++.|....++.+.|+. ...++...||...
T Consensus 68 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 68 CFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred ccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3788899887777777764 2334554444433
No 39
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.55 E-value=1.2e+02 Score=23.02 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=25.3
Q ss_pred CCCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEE
Q 027743 108 PPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVE 149 (219)
Q Consensus 108 ~~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~I~~ 149 (219)
.....++-..|++.-.+..-.+ +.+.++|+++||.|..
T Consensus 18 ~~~~~l~G~~~v~TG~l~~~~R----~e~~~~i~~~Ggkv~~ 55 (112)
T 2ebu_A 18 GAENCLEGLIFVITGVLESIER----DEAKSLIERYGGKVTG 55 (112)
T ss_dssp CCSSSSTTCEEEECSCCSSSCH----HHHHHHHHHTTCEECS
T ss_pred CCCCCcCCCEEEEeeeCCCCCH----HHHHHHHHHcCCEEec
Confidence 3344688888888777632112 2567788889998754
No 40
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=22.10 E-value=24 Score=29.05 Aligned_cols=70 Identities=16% Similarity=0.191 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEE-cChhhHHHHHHHhCCCCCee
Q 027743 127 DERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYF-TKPESIEALERTMKADDDVI 205 (219)
Q Consensus 127 eei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~-a~P~aIkELEr~Lrlde~VL 205 (219)
+.+.-+.+.+.+++.++| |..++.-|. +|-=+-| -.++... .+..++..+.+-+++++.||
T Consensus 98 ~Gv~m~~~~l~~~L~k~G--v~~i~~~Ge---~FDP~~H-------------eAv~~~~~~~gtVv~v~qkGY~l~dRvL 159 (177)
T 3a6m_A 98 QGVRAIRDGFFRILAGLG--VEEVPGEGE---AFDPRYH-------------EAVGLLPGEPGKVAKVFQRGFRMGEALV 159 (177)
T ss_dssp HHHHHHHHHHHHHHHHTT--CEECCCTTS---BCCTTTE-------------EEEEEEESSTTBEEEEEECCEEETTEEE
T ss_pred HHHHHHHHHHHHHHHHCC--CEEeCCCCC---CCCHHHh-------------hhhhcccCCcCeEEEEeecCeeeCCEEe
Confidence 356677788899999988 444555565 2222222 2233333 45677788888999999999
Q ss_pred EEEeEeecc
Q 027743 206 RSSSFKVRK 214 (219)
Q Consensus 206 R~liVKv~k 214 (219)
|...|++.+
T Consensus 160 RpA~V~V~~ 168 (177)
T 3a6m_A 160 RPARVAVGE 168 (177)
T ss_dssp ECEEEEEEE
T ss_pred cCeEEEEeC
Confidence 999998875
No 41
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=21.73 E-value=20 Score=27.73 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=31.0
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccc
Q 027743 118 MVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKR 165 (219)
Q Consensus 118 ~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~ 165 (219)
|.+..+.+.-+..+-+++++.+|.++||+|...-.-...+=.|-|..-
T Consensus 17 Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpy 64 (106)
T 2l42_A 17 FYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPY 64 (106)
T ss_dssp BEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTT
T ss_pred EEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCC
Confidence 345554444344555779999999999999887665554444444443
No 42
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=21.53 E-value=3e+02 Score=21.70 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=42.5
Q ss_pred CCCCcccEEEEeCCCCCHHHHHHHHHHHHHHHhhCCcE-----EEEEEeecccccccccccccccCCCCceeeEEEEEEE
Q 027743 109 PGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGM-----YVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFT 183 (219)
Q Consensus 109 ~~Mr~YElm~ILrP~lseeei~~lik~l~~iI~k~GG~-----I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~ 183 (219)
.+|+.+.+- +..-.+++++.+++++.+.+.+.+. |. ++-+.....-++.+..+... .|+++.
T Consensus 20 ~~MP~v~I~-~~~G~~t~eqk~~L~~~It~alve~-g~P~~~v~V~i~e~~~~~~~~gg~~~~-----------~~v~I~ 86 (161)
T 3c6v_A 20 QGMPRWLIQ-HSPNTLTPEEKSHLAQQITQAYVGF-GLPAFYVQVHFIEQPAGTSFIGGEQHP-----------NFVALT 86 (161)
T ss_dssp CSCCEEEEE-ECTTSSCHHHHHHHHHHHHHHHHHT-TCCGGGCEEEEEECCTTSEEETTEECS-----------SEEEEE
T ss_pred CCCCEEEEE-EcCCCCCHHHHHHHHHHHHHHHHHh-CcChhhEEEEEEEeCccceeECCcccC-----------CEEEEE
Confidence 459998874 4455578999999999999999987 53 33334444444444433322 377888
Q ss_pred EEc
Q 027743 184 YFT 186 (219)
Q Consensus 184 F~a 186 (219)
+++
T Consensus 87 I~~ 89 (161)
T 3c6v_A 87 IYH 89 (161)
T ss_dssp EEE
T ss_pred EEe
Confidence 733
No 43
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=21.38 E-value=1.8e+02 Score=21.41 Aligned_cols=73 Identities=11% Similarity=0.127 Sum_probs=46.5
Q ss_pred cEEEEe--CCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChh-hH
Q 027743 115 ETMMVL--RPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPE-SI 191 (219)
Q Consensus 115 Elm~IL--rP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~-aI 191 (219)
..++++ .|.-.+.+++++.+++++++. .|..+-. .-...+||.|++-. +.+...-.-- ..
T Consensus 5 kv~v~l~V~P~d~etDl~~L~~~vk~~~~-~gl~w~~---~k~~pIafGlk~L~-------------i~~vveD~~~~~t 67 (91)
T 2yy3_A 5 NLVGVIRVMPTDPDVNLDELEEKLKKVIP-EKYGLAK---VEREPIAFGLVALK-------------FYVLGRDEEGYSF 67 (91)
T ss_dssp CEEEEEEEEESSTTSCHHHHHHHHHHHSC-TTCEEEE---EEEEECTTSCEEEE-------------EEEEECSSTTCCH
T ss_pred eEEEEEEECCCCCCCCHHHHHHHHHHhcc-CCcEEee---eeEEEEEcceeeEE-------------EEEEEECCCcccc
Confidence 344444 455566778888889988876 5666555 44588999999954 3333332323 57
Q ss_pred HHHHHHhCCCCCe
Q 027743 192 EALERTMKADDDV 204 (219)
Q Consensus 192 kELEr~Lrlde~V 204 (219)
.+||+.+.--++|
T Consensus 68 D~lee~i~~~e~V 80 (91)
T 2yy3_A 68 DEVAEKFEEVENV 80 (91)
T ss_dssp HHHHHHHHHSTTE
T ss_pred HHHHHHHhcCCCc
Confidence 7777776544454
No 44
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=21.02 E-value=1.2e+02 Score=20.09 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=23.8
Q ss_pred CCcccEEEEeCCCCCHHHHHHHHHHHHHHHhh
Q 027743 111 LRQYETMMVLRPDMSEDERLALTQKYEELLVA 142 (219)
Q Consensus 111 Mr~YElm~ILrP~lseeei~~lik~l~~iI~k 142 (219)
||..++-+. +..++++.+++++.+.+.+.+
T Consensus 1 MP~I~I~~~--~grs~eqK~~L~~~it~~l~~ 30 (72)
T 3mb2_A 1 MLLLRITML--EGRSTEQKAELARALSAAAAA 30 (72)
T ss_dssp CEEEEEEEE--SCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEc--CCCCHHHHHHHHHHHHHHHHH
Confidence 666666555 457899999999999999987
No 45
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=20.80 E-value=1.9e+02 Score=21.41 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=32.9
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeeccccccc
Q 027743 118 MVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAY 160 (219)
Q Consensus 118 ~ILrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAY 160 (219)
+=++|.+.+.++..-++++.+.|.+..=+=+.+.-+|+ ..+|
T Consensus 10 ikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGR-E~~h 51 (94)
T 1tig_A 10 VRLSPTIEEHDFNTKLRNARKFLEKGDKVKATIRFKGR-AITH 51 (94)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHTTCEEEEEEECCSC-CTTH
T ss_pred EEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCc-cccC
Confidence 34799999999999999999999986666666666774 4443
No 46
>2vxh_A Chlorite dismutase; heme-based enzyme, oxidoreductase, chlorate respiration, molecular oxygen production; HET: HEM; 2.10A {Azospira oryzae} PDB: 3q09_A* 3q08_A* 3m2s_A* 3m2q_A*
Probab=20.34 E-value=1.4e+02 Score=25.98 Aligned_cols=62 Identities=6% Similarity=0.009 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHHHHHHhCCC
Q 027743 124 MSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKAD 201 (219)
Q Consensus 124 lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkELEr~Lrld 201 (219)
+..++++++++++.+++.+..+++.. ..--|.+-++ ++.++++...-+++.++++++.|+..
T Consensus 39 ~~~~eR~~~~~e~~~~~~~~~~~~~~------~~y~~~glr~----------dADlm~w~~~~~~e~lq~~~~~f~rt 100 (251)
T 2vxh_A 39 VPAMERKGAAEEVKKLIEKHKDNVLV------DLYLTRGLET----------NSDFFFRINAYDLAKAQTFMREFRST 100 (251)
T ss_dssp SCHHHHHTHHHHHHHHHHHTTTTCEE------EEEECTTTCS----------SCSEEEEEEESSHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcccee------eEEEEEeecC----------CccEEEEEeCCCHHHHHHHHHHHHhc
Confidence 46788999999999999887543221 1122334444 47999999999999999999998763
No 47
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=20.12 E-value=2.5e+02 Score=20.21 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=43.1
Q ss_pred EEEE--eCCCCCHHHHHHHHHHHHHHHhhCCcEEEEEEeecccccccccccccccCCCCceeeEEEEEEEEEcChhhHHH
Q 027743 116 TMMV--LRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEA 193 (219)
Q Consensus 116 lm~I--LrP~lseeei~~lik~l~~iI~k~GG~I~~venwG~RkLAYpIkK~~ka~~~~~~~eG~Yvlm~F~a~P~aIkE 193 (219)
.++| +.++++++++.+++..+ |.|..+.-.-.+. ..+. . -|..+.|....++.+.
T Consensus 44 ~l~V~nLp~~~~~~~l~~~F~~~--------G~i~~v~i~~~~~-----~~~~---------~-g~afV~f~~~~~a~~A 100 (139)
T 1u6f_A 44 NLMVNYIPTTVDEVQLRQLFERY--------GPIESVKIVCDRE-----TRQS---------R-GYGFVKFQSGSSAQQA 100 (139)
T ss_dssp EEEEESCSTTCCHHHHHHHHHHH--------SCEEEEEEEEETT-----TTEE---------E-EEEEEEESSHHHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc--------CCeEEEEEEEcCC-----CCCc---------c-eEEEEEECCHHHHHHH
Confidence 4666 35678888877766655 4566665321111 1111 2 3888999888777777
Q ss_pred HHH--HhCCCCCeeEEEeEe
Q 027743 194 LER--TMKADDDVIRSSSFK 211 (219)
Q Consensus 194 LEr--~Lrlde~VLR~liVK 211 (219)
|+. ...++...||...-+
T Consensus 101 ~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 101 IAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp HHHTTTEECSSCEEEEEESS
T ss_pred HHHhCCCEECCeEEEEEECC
Confidence 764 345666666554443
Done!