Citrus Sinensis ID: 027743

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MASSSLTSALTSQSKSPFYPQQLSQLPSSPLFSFARSLKTFRTNAKSLLLHKKNSNSVSLTVKAQTLDFSGSFFEGGGFGSDDDPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRKQKQKG
ccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHcccccccEEEEEEEEcccccCEEccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccEEEEEEEEEccccHHHHHHHHHcccccEEEEEEEEEccccccc
*****************F*PQQLSQLPSSPLFSFARSLKTFRTNAK*LLL*********LTVKAQTLDFSGSFFEGG*********************************LRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSF*********
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MASSSLTSALTSQSKSPFYPQQLSQLPSSPLFSFARSLKTFRTNAKSLLLHKKNSNSVSLTVKAQTLDFSGSFFEGGGFGSDDDPTSVPPGSVGTATAIEDKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIRKRNKAGESNTYLDGIYLLFTYFTKPESIEALERTMKADDDVIRSSSFKVRKQKQKG

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
30S ribosomal protein S6 alpha, chloroplastic Binds together with S18 to 16S ribosomal RNA.confidentQ8VY91
30S ribosomal protein S6 alpha, chloroplastic (Fragment) Binds together with S18 to 16S ribosomal RNA.probableP82403

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 3BBN, chain F
Confidence level:very confident
Coverage over the Query: 111-217
View the alignment between query and template
View the model in PyMOL