Query 027745
Match_columns 219
No_of_seqs 156 out of 923
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 00:55:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_C 50S ribosomal protein L 100.0 1.5E-70 5.1E-75 488.8 8.3 174 32-218 86-266 (271)
2 3v2d_D 50S ribosomal protein L 100.0 3.6E-70 1.2E-74 487.3 8.8 175 32-218 88-270 (276)
3 3bbo_E Ribosomal protein L2; l 100.0 5.5E-70 1.9E-74 484.8 4.4 176 31-218 82-266 (269)
4 3j21_B 50S ribosomal protein L 100.0 8.6E-59 2.9E-63 407.3 7.8 157 32-201 54-223 (239)
5 1vq8_A 50S ribosomal protein L 100.0 4.9E-59 1.7E-63 409.0 5.6 152 32-195 52-215 (240)
6 3jyw_B 60S ribosomal protein L 100.0 2.7E-58 9.1E-63 404.9 7.5 156 32-198 53-227 (243)
7 3iz5_B 60S ribosomal protein L 100.0 2.2E-58 7.6E-63 408.7 6.3 152 32-194 54-223 (261)
8 1giy_D 50S ribosomal protein L 100.0 1.2E-57 4.2E-62 385.6 9.8 141 31-178 26-178 (178)
9 4a17_A RPL8; eukaryotic riboso 100.0 1E-57 3.5E-62 404.8 7.0 156 32-198 55-229 (264)
10 2ftc_B Mitochondrial ribosomal 100.0 2.9E-39 1E-43 263.2 7.2 122 31-154 9-136 (136)
11 1rl2_A Protein (ribosomal prot 100.0 4.9E-35 1.7E-39 238.6 5.6 105 31-142 26-137 (137)
12 1oei_A Major prion protein; oc 35.3 32 0.0011 20.4 2.6 10 174-183 6-15 (26)
No 1
>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...
Probab=100.00 E-value=1.5e-70 Score=488.77 Aligned_cols=174 Identities=42% Similarity=0.751 Sum_probs=159.5
Q ss_pred eccceeecC--CC-----CCCCCCCchHHHHHHhhhcccccccCCCCceecCCCCCCcceEeeeeeccCCCCceeecCCC
Q 027745 32 QSSETELVG--DP-----SKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGT 104 (219)
Q Consensus 32 ~~~~~~lv~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~k~GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAGt 104 (219)
+++.||||- |+ +++|.++.+|+|+... ++++++||+|||.+||+||+|||||++||+||||||||||
T Consensus 86 RsA~IAlv~~~dg~k~YIlAp~gl~~Gd~I~sg~------~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt 159 (271)
T 3r8s_C 86 RSANIALVLYKDGERRYILAPKGLKAGDQIQSGV------DAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT 159 (271)
T ss_dssp SSSEEEEEEETTSCEEEEECBTTCCSSCBCCBSS------SSCSSTTCEEEGGGSCTTCEEESCCSSTTTCCCSCCSTTC
T ss_pred CceeEEEEEecCCCEEEEEeeCCCcCCCEEEECC------CCCCCcCcEeehhhCCCCCEEEEEEecCCCCceEEEeCCC
Confidence 567788764 33 3789999988886543 4678999999999999999999999999999999999999
Q ss_pred cEEEeeecCCCeEEEEecCCceEeeccccceeeeeecCCCcCccccccccccccCCCCCccceeecCCCCCCCCCCCCCC
Q 027745 105 SAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 184 (219)
Q Consensus 105 ~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~lgKAG~~R~lG~RP~VRGvAMNpvDHPHGGGeGks 184 (219)
||+|+.+ +++|++|||||||+|+|+.+|+||||+|||.+|.+++++|||++||+|+||+|||||||||||||||||||
T Consensus 160 ~A~ii~k-~~~~~~vrLPSGe~r~i~~~c~ATIG~Vsn~~~~~~~lgKAGr~rw~g~rP~VRGVAMNPVDHPHGGGeGk- 237 (271)
T 3r8s_C 160 YVQIVAR-DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGR- 237 (271)
T ss_dssp CEEEEEC-STTEEEEECTTSCEEEEETTCEEEESCBSCSGGGGCCCCSHHHHHTTTBCCCCCGGGSCTTTCSSCCCSSS-
T ss_pred eEEEEEe-cCCEEEEECCCCCeEEEcccCeEEEEeecCcchhhcEecccccccCCCCCCccCeEeeCCccCCccCcCCC-
Confidence 9999987 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccCCccccCCCCccccCC
Q 027745 185 KSSGNHGRCSLTPWGKPCKSGYKTASPKKKKKLA 218 (219)
Q Consensus 185 ~~~~~~gr~~~sPWG~~tk~g~kTr~~~~~~~~~ 218 (219)
+ +|++|+||||++|| |+|||++|++++|.
T Consensus 238 ~----ggr~p~tPWG~~tk-G~kTr~~k~s~~~i 266 (271)
T 3r8s_C 238 N----FGKHPVTPWGVQTK-GKKTRSNKRTDKFI 266 (271)
T ss_dssp C----CCSCCBCTTSCBCT-TCCCCCCSTTGGGE
T ss_pred C----CCCCCCCccccccc-CcccCCCCCCCCEE
Confidence 4 35899999999999 99999988888764
No 2
>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=100.00 E-value=3.6e-70 Score=487.31 Aligned_cols=175 Identities=43% Similarity=0.746 Sum_probs=158.5
Q ss_pred eccceeecC--CC-----CCCCCCCchHHHHHHhhhcccccccCCCCceecCCCCCCcceEeeeeeccCCCCceeecCCC
Q 027745 32 QSSETELVG--DP-----SKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGT 104 (219)
Q Consensus 32 ~~~~~~lv~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~k~GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAGt 104 (219)
+++.||||- |+ +++|.++.+|+|+.- .++++++||+|||.+||+||+|||||++||+||||||||||
T Consensus 88 RsA~IAlv~~~dg~k~yIlAp~gl~~Gd~I~sg------~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt 161 (276)
T 3v2d_D 88 RSARIALLHYVDGEKRYIIAPDGLQVGQQVVAG------PDAPIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGT 161 (276)
T ss_dssp SSSCEEEEEETTSCEEEEECBTTCCTTCEECBS------TTCCSSTTCEEEGGGSCTTCEEESEESSTTSCEEESCSTTC
T ss_pred CCceEEEEEeCCCCEEEEEeeCCCcCCCEEEeC------CCCCCCCCCeehhhhCCCCCEEEEEEecCCCCceEEEeCCC
Confidence 677788774 32 378999998887653 35678999999999999999999999999999999999999
Q ss_pred cEEEeeecCCCeEEEEecCCceEeeccccceeeeeecCCCcCccccccccccccCCCCCccceeecCCCCCCCCCCCCCC
Q 027745 105 SAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRS 184 (219)
Q Consensus 105 ~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~lgKAG~~R~lG~RP~VRGvAMNpvDHPHGGGeGks 184 (219)
||+|+.+ ++++++|||||||+|+|+.+|+||||+|||.+|.+++++|||++||+|+||+|||||||||||||||||||+
T Consensus 162 ~A~ii~k-~~~~~~vrLPSGe~r~i~~~c~AtIG~Vsn~~~~~~~lgKAGr~rw~g~rP~VRGVAMNPVDHPHGGGeGr~ 240 (276)
T 3v2d_D 162 SAQIQGR-EGDYVILRLPSGELRKVHGECYATVGAVGNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGRA 240 (276)
T ss_dssp CEEEEEE-ETTEEEEECTTSCEEEEETTCEEEESCBSCGGGGGCCCCSHHHHHHTTBCCCCCGGGSCTTTCTTCCCSSCC
T ss_pred eEEEEEe-cCCEEEEECCCCCeEEEcccCeEEEEeecCcchhhcEeccCcccccCCCCCccCeEecCCccCCCcCcCCCC
Confidence 9999977 589999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCcccCCccccCCC-CccccCC
Q 027745 185 KSSGNHGRCSLTPWGKPCKSGYKTASP-KKKKKLA 218 (219)
Q Consensus 185 ~~~~~~gr~~~sPWG~~tk~g~kTr~~-~~~~~~~ 218 (219)
+ +|++|+||||++|| |+|||++ |.+++|.
T Consensus 241 ~----~g~~p~spwG~~~k-G~kTr~~~k~s~~~i 270 (276)
T 3v2d_D 241 P----RGRPPASPWGWQTK-GLKTRKRRKPSSRFI 270 (276)
T ss_dssp C----CCSSCBCTTSCBCS-SCCCSCTTCGGGGGE
T ss_pred C----CCCCCcCccccccc-CCCCCCCCCCCCCEE
Confidence 6 45999999999999 9999975 4456653
No 3
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=5.5e-70 Score=484.84 Aligned_cols=176 Identities=41% Similarity=0.732 Sum_probs=158.8
Q ss_pred eeccceeecC--CC-----CCCCCCCchHHHHHHhhhcccccccCCCCceecCCCCCCcceEeeeeeccCCCCceeecCC
Q 027745 31 YQSSETELVG--DP-----SKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAG 103 (219)
Q Consensus 31 ~~~~~~~lv~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~k~GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAG 103 (219)
++++.||||- |+ +++|.++.+|+|+.- .++++++||+|||.+||+||+|||||++||+|||||||||
T Consensus 82 nRsA~IAlv~y~dg~k~yIlAp~gl~~Gd~I~sg------~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAG 155 (269)
T 3bbo_E 82 NRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSG------TEVPIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAG 155 (269)
T ss_dssp SSCSCCCCCCCSSCCCCCCCCCSSCSSCCCCCCS------SSCCCSSCSCEEGGGCSSCSSCCCCCSSSSCCCSSCCTTT
T ss_pred CCCeeEEEEEeCCCCEEEEEchhhcccccEEEEC------CCCCCCcCCEeEeccCCCCCEEEeEeccCCCCceEEeeCC
Confidence 3677888874 32 488899888887653 3567899999999999999999999999999999999999
Q ss_pred CcEEEeeecCCCeEEEEecCCceEeeccccceeeeeecCCCcCccccccccccccCCCCCccceeecCCCCCCCCCCCCC
Q 027745 104 TSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGR 183 (219)
Q Consensus 104 t~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~lgKAG~~R~lG~RP~VRGvAMNpvDHPHGGGeGk 183 (219)
|||+|+.+ +++|++|||||||+|+|+.+|+||||+|||.+|.+++++|||++||+|+||+|||||||||||||||||||
T Consensus 156 t~A~ii~k-e~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAGr~rw~g~rP~VRGvAMNPVDHPHGGGeGr 234 (269)
T 3bbo_E 156 AVAKLIAK-EGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKRLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR 234 (269)
T ss_dssp CCCBCCSS-CSTTCCCBCSTTCBCCCCSSCEECSCCCCCSHHHHSCCCSSSSSSTTTCSCSCCCCCSCTTTSSSCCSSSC
T ss_pred CEEEEEEe-cCCEEEEECCCCCEEEEchhhheeEeeecCchhhhcchhhhhhcccCCCCCcccceeeccccCCCCcCCCc
Confidence 99999977 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC-CCCCCCcccCCccccCCC-CccccCC
Q 027745 184 SKSSGNHGRC-SLTPWGKPCKSGYKTASP-KKKKKLA 218 (219)
Q Consensus 184 s~~~~~~gr~-~~sPWG~~tk~g~kTr~~-~~~~~~~ 218 (219)
++ +||+ |+||||++|| |+|||++ |.++++.
T Consensus 235 ~~----~Gr~~p~tpWG~~~k-g~kTr~~~k~s~~~i 266 (269)
T 3bbo_E 235 AP----IGRKSPTTPWGYPAL-GRRSRKRNKYSDNFI 266 (269)
T ss_dssp CC----TTSSCCSSSCCCSCC-CCCCCSSSCCCCBCC
T ss_pred CC----CCCCCCCCCCccCcC-CccCCCCCCCCCceE
Confidence 86 4685 9999999999 9999964 4466664
No 4
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=8.6e-59 Score=407.31 Aligned_cols=157 Identities=34% Similarity=0.470 Sum_probs=142.3
Q ss_pred eccceeecC--CC-----CCCCCCCchHHHHHHhhhcccccccCCCCceecCCCCCCcceEeeeeeccCCCCceeecCCC
Q 027745 32 QSSETELVG--DP-----SKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGT 104 (219)
Q Consensus 32 ~~~~~~lv~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~k~GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAGt 104 (219)
+++.||||- |+ +++|.++.+|+|+.- .++++++||+|||.+||+||+|||||++||+||||||||||
T Consensus 54 RsA~IALV~~~dgek~YIlApeGl~vGd~I~sG------~~a~i~~GN~LPL~~iP~GT~I~NIE~~pG~gg~laRsAGt 127 (239)
T 3j21_B 54 RTAPVARVKFENGIEKLIIAPEGLLVGQEIYIG------PDAPIAVGNTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGT 127 (239)
T ss_dssp TTEEEEEEEESSSCEEEECCBTTCCTTCEEEES------SSSCSSTTCEEETTTSCTTCEEESCCSSSSSCCCSCCSTTC
T ss_pred CCeeEEEEEecCCCEEEEEccccCccccEEEEC------CCCCCCcCCEeeccccCCCCEEEeEEecCCCceeEEEecCC
Confidence 677888874 42 488999998888642 35678999999999999999999999999999999999999
Q ss_pred cEEEeeecCCCeEEEEecCCceEeeccccceeeeeecCCCcCccccccccccccC-----CCCCccceeecCCCCCCCCC
Q 027745 105 SAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWL-----GRRPVVRGVAMNPVDHPHGG 179 (219)
Q Consensus 105 ~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~lgKAG~~R~l-----G~RP~VRGvAMNpvDHPHGG 179 (219)
||+|+.+ +++|++|||||||+|+|+.+|+||||+|||.+|.+++++|||++||+ |+||+|||||||||||||||
T Consensus 128 ~A~ii~k-~~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAGr~r~~~k~k~g~rP~VRGVAMNPVDHPHGG 206 (239)
T 3j21_B 128 YALVVSR-EPDKVIVQLPSGELKAFNPMCRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGG 206 (239)
T ss_dssp CEEEEEE-CSSCEEEECTTSCEEEECTTCEEEESCBSCCSTTTSCCCSHHHHHHHHTSSCCCCSCCCSTTSCTTTCSSCC
T ss_pred eEEEEEe-cCCEEEEEcCCCCEEEEeccCeEEEeeccCcccccceeeecChhhccchhhcCCCceecceeeccccCCCCC
Confidence 9999987 58999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCCCCCCCCCCC-CCCCCCcc
Q 027745 180 GEGRSKSSGNHGRC-SLTPWGKP 201 (219)
Q Consensus 180 GeGks~~~~~~gr~-~~sPWG~~ 201 (219)
|+++ +|++ |+|+|.-|
T Consensus 207 --g~~~----~Grps~vsr~app 223 (239)
T 3j21_B 207 --KEHH----PGKPTTTSRRAPP 223 (239)
T ss_dssp --SSSS----CSSCSCBCSSCCT
T ss_pred --CCCC----CCccCCcCCCCCC
Confidence 8875 4675 79999755
No 5
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=100.00 E-value=4.9e-59 Score=408.95 Aligned_cols=152 Identities=37% Similarity=0.553 Sum_probs=137.8
Q ss_pred eccceeecC--C-----CCCCCCCCchHHHHHHhhhcccccccCCCCceecCCCCCCcceEeeeeeccCCCCceeecCCC
Q 027745 32 QSSETELVG--D-----PSKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGT 104 (219)
Q Consensus 32 ~~~~~~lv~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~k~GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAGt 104 (219)
+++.||||- | .+++|.++.+|+|+.- .++++++||+|||.+||+||+|||||++||+||||||||||
T Consensus 52 RsA~IAlv~y~dg~k~yIlAp~gl~vGd~I~sg------~~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt 125 (240)
T 1vq8_A 52 RSAPVAAVEFEDGDRRLILAPEGVGVGDELQVG------VSAEIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGV 125 (240)
T ss_dssp TTEEEEEEEETTSCEEEECCBTTCBTTCEEEBS------TTCCSCTTCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTC
T ss_pred CceeEEEEEecCCCEEEEEecCCCccCeEEEEC------CCccccccccccccCCCCCCEEEeEeccCCCCceEEEeCCC
Confidence 667788773 4 3488999888877643 35678999999999999999999999999999999999999
Q ss_pred cEEEeeecCCCeEEEEecCCceEeeccccceeeeeecCCCcCccccccccccccCC-----CCCccceeecCCCCCCCCC
Q 027745 105 SAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLG-----RRPVVRGVAMNPVDHPHGG 179 (219)
Q Consensus 105 ~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~lgKAG~~R~lG-----~RP~VRGvAMNpvDHPHGG 179 (219)
||+|+.+ +++|++|||||||+|+|+.+|+||||+|||.+|.+++|+|||++||+| +||+|||||||||||||||
T Consensus 126 ~A~ii~k-e~~~~~vrLPSGe~r~v~~~crAtIG~Vsn~~~~~~~lgKAG~~r~~gk~k~~~rP~VRGvAMNPVDHPHGG 204 (240)
T 1vq8_A 126 NAQLLTH-DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGG 204 (240)
T ss_dssp CEEEEEC-CSSCEEEECTTSCEEEECTTCEEEESCBTTTTTTTSCCCSHHHHHHHHTTSSCCCSCCCGGGSCGGGCTTCC
T ss_pred eEEEEEe-cCCEEEEECCCCCEEEEechheeeEEEecCcchhccccccCccccccccccCCCCCceeeeeeccccCCCCC
Confidence 9999987 689999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CCCCCCCCCCCCCCCC
Q 027745 180 GEGRSKSSGNHGRCSL 195 (219)
Q Consensus 180 GeGks~~~~~~gr~~~ 195 (219)
|||+ + +|+++.
T Consensus 205 Geg~-~----~Gr~st 215 (240)
T 1vq8_A 205 GGRQ-H----PGKPKS 215 (240)
T ss_dssp SSSC-C----CSSCSE
T ss_pred CCCC-C----CCCCCC
Confidence 9999 3 467753
No 6
>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 4b6a_A 1s1i_B
Probab=100.00 E-value=2.7e-58 Score=404.88 Aligned_cols=156 Identities=35% Similarity=0.548 Sum_probs=138.7
Q ss_pred eccceeecC--CC----------CCCCCCCchHHHHHHhhhcccccccCCCCceecCCCCCCcceEeeeeeccCCCCcee
Q 027745 32 QSSETELVG--DP----------SKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLV 99 (219)
Q Consensus 32 ~~~~~~lv~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~k~GN~lPL~~IP~GT~I~NIEl~PG~Ggkla 99 (219)
+++.||||- |+ +++|.++.+|+++.-. ++++++||+|||.+||+||+|||||++||+|||||
T Consensus 53 RsA~IAlv~~~dg~~~k~~k~yIlApeGl~vGd~I~sg~------~a~i~~GN~lPL~~IP~GT~IhNIE~~pG~gg~la 126 (243)
T 3jyw_B 53 RGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIYAGK------KASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALA 126 (243)
T ss_dssp TTEECCBBCCSSCCSSSSCCCBCCCCTTCCSSCBCCCST------TCCCCBTCEEESSSSCTTEEEESBCCSSCCSCCBC
T ss_pred ceeEEEEEEecCCCcccceEEEEEeecCCccccEEEECC------CCCCCcCCEeccccCCCCCEEEEEEecCCCcceEE
Confidence 677888774 32 4778888888876533 46789999999999999999999999999999999
Q ss_pred ecCCCcEEEeee-cCCCeEEEEecCCceEeeccccceeeeeecCCCcCccccccccccccC-----CCCCccceeecCCC
Q 027745 100 RAAGTSAKILKE-PTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWL-----GRRPVVRGVAMNPV 173 (219)
Q Consensus 100 RSAGt~A~Ii~k-~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~lgKAG~~R~l-----G~RP~VRGvAMNpv 173 (219)
|||||||+|+.+ +++++++|||||||+|+|+.+|+||||+|||.+|.+++++|||++||+ ++||+|||||||||
T Consensus 127 RsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~c~ATIG~Vsn~~~~~~~l~KAGr~r~~~k~k~~~rP~VRGVAMNpV 206 (243)
T 3jyw_B 127 RASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPV 206 (243)
T ss_dssp CSSSCCEEECCCSSSCSSBCEECSSSCCCCBSSCCEEEESCCSCCCSSSSCCSCSTTTTTSTTTSCSCCSCCCTTTSCTT
T ss_pred EecCCeEEEEEEccCCCEEEEECCCCCEEEEeccCeEEEEeccCCccccceecccChhhhhhhccCCCCCccCceeeCCc
Confidence 999999999966 358999999999999999999999999999999999999999999998 99999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCC
Q 027745 174 DHPHGGGEGRSKSSGNHGRC-SLTPW 198 (219)
Q Consensus 174 DHPHGGGeGks~~~~~~gr~-~~sPW 198 (219)
||||||||+++ +|++ ++|.+
T Consensus 207 DHPHGGGe~q~-----iG~pstv~r~ 227 (243)
T 3jyw_B 207 DHPHGGGNHQH-----IGKASTISRG 227 (243)
T ss_dssp TSTTCCTTTTC-----CSSCSEECSS
T ss_pred cCCCCCCCCCC-----CCCCCCcCCC
Confidence 99999999886 4576 35443
No 7
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_B 2zkr_a
Probab=100.00 E-value=2.2e-58 Score=408.66 Aligned_cols=152 Identities=32% Similarity=0.532 Sum_probs=137.0
Q ss_pred eccceeecC--CC----------CCCCCCCchHHHHHHhhhcccccccCCCCceecCCCCCCcceEeeeeeccCCCCcee
Q 027745 32 QSSETELVG--DP----------SKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLV 99 (219)
Q Consensus 32 ~~~~~~lv~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~k~GN~lPL~~IP~GT~I~NIEl~PG~Ggkla 99 (219)
+++.||||- |+ +++|.++.+|+++.- .++++++||+|||.+||+||+|||||++||+|||||
T Consensus 54 RsA~IAlV~~~dg~~~k~~k~yIlApeGl~vGd~I~sG------~~a~i~~GN~LPL~~IP~GT~IhNIE~~pG~Gg~la 127 (261)
T 3iz5_B 54 RGAPLAKVTFRHPFRYKHQKELFVAAEGMYTGQFVYCG------RRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFA 127 (261)
T ss_dssp TTEEEEEEECCCCSSSCCCCCEEECBTTCBTTCEEEBS------TTCCSCTTCEEEGGGSCTTEEEESBCSSTTSCCCBS
T ss_pred ceeEEEEEEecCCCcccceEEEEEeccCCCCCCEEEeC------CCCCCCCCCEeccccCCCCCEEEEEEecCCCcceEE
Confidence 677888774 33 377888888877653 346789999999999999999999999999999999
Q ss_pred ecCCCcEEEeee-cCCCeEEEEecCCceEeeccccceeeeeecCCCcCccccccccccccC-----CCCCccceeecCCC
Q 027745 100 RAAGTSAKILKE-PTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWL-----GRRPVVRGVAMNPV 173 (219)
Q Consensus 100 RSAGt~A~Ii~k-~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~lgKAG~~R~l-----G~RP~VRGvAMNpv 173 (219)
|||||||+|+.+ +++++++|||||||+|+|+.+|+||||+|||.+|.+++|+|||++||+ |+||+|||||||||
T Consensus 128 RsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~CrATIG~Vsn~~~~~k~lgKAGr~r~~~k~k~g~rP~VRGVAMNPV 207 (261)
T 3iz5_B 128 RASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPV 207 (261)
T ss_dssp CSTTCCEEEEECSSCSSCEEEECTTSCEEEECTTCEEEESCBSSTTTTTSCCCCHHHHHHHHHTSSCCCSCCCTTTSCTT
T ss_pred EecCCeEEEEEeccCCCEEEEECCCCCEEEEecCCcEEEEEecCCccccceecccchhhhhhhccCCCCCccceeeeCCc
Confidence 999999999966 367999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 027745 174 DHPHGGGEGRSKSSGNHGRCS 194 (219)
Q Consensus 174 DHPHGGGeGks~~~~~~gr~~ 194 (219)
||||||||++. +|+++
T Consensus 208 DHPHGGGe~q~-----iG~ps 223 (261)
T 3iz5_B 208 EHPHGGGNHQH-----IGHAS 223 (261)
T ss_dssp TCTTCCSSSCC-----CSSCS
T ss_pred cCCCCCCCCCC-----CCCCC
Confidence 99999999886 45763
No 8
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=100.00 E-value=1.2e-57 Score=385.58 Aligned_cols=141 Identities=42% Similarity=0.670 Sum_probs=130.8
Q ss_pred eeccceeec--CCC-----CCCCCCCchHHHHHHhhhcccccccCCCCceecCCCCCCcceEeeeeeccCCCCceeecCC
Q 027745 31 YQSSETELV--GDP-----SKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAG 103 (219)
Q Consensus 31 ~~~~~~~lv--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~k~GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAG 103 (219)
++++.|||| .|+ +++|.++.+|+++.- .++++++||+|||.+||+||+|||||++||+|||||||||
T Consensus 26 ~RsA~IAlv~y~dg~~~yilAp~gl~~Gd~I~~g------~~a~i~~GN~lpL~~iP~Gt~I~NIE~~pG~gg~laRsAG 99 (178)
T 1giy_D 26 NRSANIALINYADGEKRYIIAPKNLKVGMEIMSG------PDADIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAG 99 (178)
T ss_pred CCCeEEEEEEecCCCEEEEECccCCccccEEEEC------CCCccccCCCcccccCCCCCEEEeEeccCCCCeEEEEeCC
Confidence 377888888 454 588999998888763 3457899999999999999999999999999999999999
Q ss_pred CcEEEeeecCCCeEEEEecCCceEeeccccceeeeeecCCCcCccccccccccccCC-----CCCccceeecCCCCCCCC
Q 027745 104 TSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLG-----RRPVVRGVAMNPVDHPHG 178 (219)
Q Consensus 104 t~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~lgKAG~~R~lG-----~RP~VRGvAMNpvDHPHG 178 (219)
|||+|+.+ +++|++|||||||+|+|+.+|+||||+|||.+|.+++++|||++||+| +||+||||||||||||||
T Consensus 100 t~a~ii~k-e~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAG~~r~~gk~k~~~rP~VRGvAMNpvDHPHG 178 (178)
T 1giy_D 100 TSAQVLGK-EGKYVIVRLASGEVRMILGKCRATVGEVGNGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFG 178 (178)
T ss_pred CeEEEEEe-cCCeEEEECCCCCEEEEcccCcEEEEEecCcchhcCeecccchhhcCCCccCCcCCccceeeeCCccCCCC
Confidence 99999987 689999999999999999999999999999999999999999999999 999999999999999998
No 9
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Probab=100.00 E-value=1e-57 Score=404.78 Aligned_cols=156 Identities=34% Similarity=0.542 Sum_probs=139.1
Q ss_pred eccceeecC--CC----------CCCCCCCchHHHHHHhhhcccccccCCCCceecCCCCCCcceEeeeeeccCCCCcee
Q 027745 32 QSSETELVG--DP----------SKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLV 99 (219)
Q Consensus 32 ~~~~~~lv~--~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~k~GN~lPL~~IP~GT~I~NIEl~PG~Ggkla 99 (219)
+++.||||- |+ +++|.++.+|+++.- .++++++||+|||.+||+||+|||||++||+|||||
T Consensus 55 RsA~IAlv~~~dg~~~k~~k~YIlApeGl~vGd~I~sg------~~a~i~~GN~LPL~~IP~GT~IhNIE~~pG~Gg~la 128 (264)
T 4a17_A 55 RGAPLAEVAFRDPYRYKTNKEHFIAAEGQYSGQYVYCG------LKAQIAVGNVLPINRIPEGTVVCNVEEKVGDRGTFS 128 (264)
T ss_dssp CSSCEEEEEEECTTSSCEEEEEEECBTTCBTTCEEEEE------SSCCCCTTCEEEGGGSCTTCEEESBCSSTTCSCCBC
T ss_pred CCceEEEEEecCCCcccceEEEEEeecCCccccEEEEC------CCCCCCcCCcccHhhCCCCCEEEEEEecCCCcceEE
Confidence 677788763 33 478889888887653 356789999999999999999999999999999999
Q ss_pred ecCCCcEEEeee-cCCCeEEEEecCCceEeeccccceeeeeecCCCcCccccccccccccC-----CCCCccceeecCCC
Q 027745 100 RAAGTSAKILKE-PTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWL-----GRRPVVRGVAMNPV 173 (219)
Q Consensus 100 RSAGt~A~Ii~k-~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~lgKAG~~R~l-----G~RP~VRGvAMNpv 173 (219)
|||||||+|+.+ +|+++++|||||||+|+|+.+|+||||+|||.+|.+++|+|||++||+ ++||+|||||||||
T Consensus 129 RsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~CrATIG~Vsn~~~~~~~l~KAGr~r~~~k~k~~~rP~VRGVAMNPV 208 (264)
T 4a17_A 129 RASGCYATIIGHSEDGDKTRIRLPSGARKTIPGSCRATVGIVAGGGRTDKPILKAGNQFHKYARKRKSWPRVRGVAMNPV 208 (264)
T ss_dssp CSTTCCEEEEEECSSSCEEEEECTTSCEEEEETTCEEEESCBSSTTGGGSCCCCHHHHHHHHHTSSCCCSCCCTTTSCTT
T ss_pred EeCCCeEEEEEEccCCCEEEEECCCCCEEEEeccCcEEEEeccCCccccceeeecchhhhhhhccCCCCCCccceeeCCc
Confidence 999999999966 368999999999999999999999999999999999999999999997 99999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCC
Q 027745 174 DHPHGGGEGRSKSSGNHGRC-SLTPW 198 (219)
Q Consensus 174 DHPHGGGeGks~~~~~~gr~-~~sPW 198 (219)
||||||||+++ +|++ ++|.+
T Consensus 209 DHPHGGGe~q~-----iG~pstv~r~ 229 (264)
T 4a17_A 209 DHPHGGGNHQH-----IGHPATVSKW 229 (264)
T ss_dssp TCSSCCSSSCC-----CCSCSEECTT
T ss_pred cCCCCCCCCCC-----CCCCCCccCC
Confidence 99999999886 4676 35554
No 10
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=100.00 E-value=2.9e-39 Score=263.24 Aligned_cols=122 Identities=30% Similarity=0.528 Sum_probs=107.3
Q ss_pred eeccceeecCCCC------CCCCCCchHHHHHHhhhcccccccCCCCceecCCCCCCcceEeeeeeccCCCCceeecCCC
Q 027745 31 YQSSETELVGDPS------KQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGT 104 (219)
Q Consensus 31 ~~~~~~~lv~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~k~GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAGt 104 (219)
++++.|+||.+.. ++|.++.+|+++...+ +....+++++||+|||++||+||+|||||++||+||||||||||
T Consensus 9 nRsA~IAlv~~~~~k~yIlAp~gl~~Gd~I~s~~~-~g~~a~~i~~GN~lpL~~iP~Gt~IhNIE~~pG~gg~laRsAGt 87 (136)
T 2ftc_B 9 CRSADIALVAGGSRKRWIIATENMQAGDTILNSNH-IGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQYIRAAGT 87 (136)
T ss_pred CCCcEEEEEECCCeeEEEEeecCCcCCCEEEECCc-ccccccccCcCcEEEecccCCCCEEEEEeccCCCCcEEEEeCCC
Confidence 3678888887654 6788888888876432 11111368999999999999999999999999999999999999
Q ss_pred cEEEeeecCCCeEEEEecCCceEeeccccceeeeeecCCCcCcccccccc
Q 027745 105 SAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAG 154 (219)
Q Consensus 105 ~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~lgKAG 154 (219)
||+|+.+ +++|++|||||||+|+|+.+|+||||+|||.+|+++++||||
T Consensus 88 ~a~ii~k-e~~~~~vrLPSGe~r~v~~~c~AtIG~Vsn~~~~~~~lgKAG 136 (136)
T 2ftc_B 88 CGVLLRK-VNGTAIIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAG 136 (136)
T ss_pred eEEEEEe-cCCEEEEECCCCCeEEECcCCcEEEEEecChhhccceeccCC
Confidence 9999987 689999999999999999999999999999999999999998
No 11
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=100.00 E-value=4.9e-35 Score=238.58 Aligned_cols=105 Identities=40% Similarity=0.673 Sum_probs=93.5
Q ss_pred eeccceeec--CCC-----CCCCCCCchHHHHHHhhhcccccccCCCCceecCCCCCCcceEeeeeeccCCCCceeecCC
Q 027745 31 YQSSETELV--GDP-----SKQEKPKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAG 103 (219)
Q Consensus 31 ~~~~~~~lv--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~k~GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAG 103 (219)
++++.|||| .|+ +++|.++.+|++..- .++++++||+|||++||+||.|||||++||+|||||||||
T Consensus 26 nRsA~IAlv~y~dg~k~yIlAp~gl~~Gd~I~~g------~~a~i~~GN~lpL~~iP~Gt~IhNIE~~pG~gg~laRsAG 99 (137)
T 1rl2_A 26 NRSANIALINYADGEKRYIIAPKNLKVGMEIMSG------PDADIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAG 99 (137)
T ss_dssp GGTEEEEEEEETTSCEEEEECCTTCCTTCEECBS------TTCCSCTTCEEEGGGSCTTCEEESEESSTTSCEEESSSSS
T ss_pred CCCEEEEEEEeCCCCEEEEEecccCccceEEEEC------CccccccCCEeehhhCCCCCEEEEEEccCCCCcEEEEeCC
Confidence 477888888 453 388999998887653 3457899999999999999999999999999999999999
Q ss_pred CcEEEeeecCCCeEEEEecCCceEeeccccceeeeeecC
Q 027745 104 TSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSN 142 (219)
Q Consensus 104 t~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn 142 (219)
|||+|+.+ ++++++|||||||+|+|+.+|+||||+|||
T Consensus 100 t~a~ii~k-e~~~~~vrLPSGe~r~v~~~c~AtIG~VsN 137 (137)
T 1rl2_A 100 TSAQVLGK-EGKYVIVRLASGEVRMILGKCRATVGEVGN 137 (137)
T ss_dssp CCEEEEEE-ETTEEEEECTTSCEEEEETTSEEEESCCC-
T ss_pred CeEEEEEE-cCCEEEEECCCCCeEEECCcCcEEEEEccC
Confidence 99999987 689999999999999999999999999998
No 12
>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Probab=35.34 E-value=32 Score=20.41 Aligned_cols=10 Identities=60% Similarity=1.282 Sum_probs=6.7
Q ss_pred CCCCCCCCCC
Q 027745 174 DHPHGGGEGR 183 (219)
Q Consensus 174 DHPHGGGeGk 183 (219)
-||||||-|.
T Consensus 6 gqp~gg~wgq 15 (26)
T 1oei_A 6 GQPHGGGWGQ 15 (26)
T ss_dssp SSTTSSSSTT
T ss_pred CCccCCcCCC
Confidence 4788776555
Done!