Query 027745
Match_columns 219
No_of_seqs 156 out of 923
Neff 4.2
Searched_HMMs 13730
Date Tue Mar 26 00:55:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027745.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027745hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2qamc1 b.34.5.3 (C:125-269) C 100.0 1.8E-69 1.3E-73 443.5 10.0 143 70-219 1-143 (145)
2 d2j01d1 b.34.5.3 (D:127-273) C 100.0 3.3E-68 2.4E-72 436.7 10.5 142 70-217 1-143 (147)
3 d1vqoa1 b.34.5.3 (A:91-237) C- 100.0 1E-58 7.4E-63 380.1 9.3 139 71-212 1-144 (147)
4 d1rl2a1 b.34.5.3 (A:126-195) C 100.0 2E-33 1.5E-37 204.6 6.3 70 71-141 1-70 (70)
5 d1bkba1 b.34.5.2 (A:4-74) Euka 56.4 15 0.0011 24.3 6.0 55 67-130 13-71 (71)
6 d1iz6a1 b.34.5.2 (A:2-70) Euka 49.2 17 0.0012 23.7 5.3 55 67-130 10-68 (69)
7 d2eifa1 b.34.5.2 (A:1-73) Euka 30.5 50 0.0036 21.6 5.4 57 67-130 14-72 (73)
8 d1br2a1 b.34.3.1 (A:34-79) Myo 21.9 30 0.0022 21.3 2.6 26 106-132 14-40 (46)
9 d1i42a_ d.15.1.2 (A:) p47 {Rat 19.1 21 0.0015 23.9 1.5 26 115-140 15-40 (89)
10 d1skye2 b.49.1.1 (E:1-82) F1 A 18.4 18 0.0013 24.8 1.0 12 163-174 57-68 (82)
No 1
>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.8e-69 Score=443.47 Aligned_cols=143 Identities=47% Similarity=0.900 Sum_probs=137.4
Q ss_pred CCceecCCCCCCcceEeeeeeccCCCCceeecCCCcEEEeeecCCCeEEEEecCCceEeeccccceeeeeecCCCcCccc
Q 027745 70 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKK 149 (219)
Q Consensus 70 ~GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAGt~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~ 149 (219)
+||+|||.+||+||+|||||+.||+|||||||||+||+|+.+ +++|++|||||||+|+|+.+|+||||+|||.+|.+++
T Consensus 1 pGN~lpL~~IP~Gt~I~NIE~~pg~Ggkl~RsAGt~a~vi~k-~~~~~~vkLPSGe~r~i~~~c~ATiG~vsn~~~~~~~ 79 (145)
T d2qamc1 1 PGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVAR-DGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRV 79 (145)
T ss_dssp TTCCCBTTTSCSSCCCCSBCSSTTSCCCBSCSTTCCCEEEEE-ETTEEEEECTTSCEEEECSSCBCCSSCBSCCGGGGCC
T ss_pred CcccCcHhhCCCCCeEEEEeccCCCCccEeeecccEEEEEEe-cCCEEEEEecCcceEEeccccceEeccccchhhhcch
Confidence 699999999999999999999999999999999999999977 6899999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCccccCCC
Q 027745 150 LRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTASPKKKKKLAF 219 (219)
Q Consensus 150 lgKAG~~R~lG~RP~VRGvAMNpvDHPHGGGeGks~~~~~~gr~~~sPWG~~tk~g~kTr~~~~~~~~~~ 219 (219)
++|||++||+|+||+||||||||||||||||||++ +|++|+||||++|| |+|||++|+.+++.+
T Consensus 80 ~gKAG~~r~~g~rP~VRGvaMNpvdHPhGGg~~~~-----~g~~p~tpwG~~~k-g~kTr~~k~~~~~i~ 143 (145)
T d2qamc1 80 LGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRN-----FGKHPVTPWGVQTK-GKKTRSNKRTDKFIV 143 (145)
T ss_dssp CCSHHHHHTTTCCCCCCGGGSCGGGCTTCCCSSSC-----CCSCCBCTTSCBSS-SCCCCCCSSSGGGBS
T ss_pred hchhhHHHhCCCCCceeeeeccCccCCCCCCCCCC-----CCCCCCCCCcccCC-CCcCCCCCCCCCEEE
Confidence 99999999999999999999999999999999996 35899999999999 999999998888763
No 2
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=3.3e-68 Score=436.71 Aligned_cols=142 Identities=50% Similarity=0.931 Sum_probs=135.0
Q ss_pred CCceecCCCCCCcceEeeeeeccCCCCceeecCCCcEEEeeecCCCeEEEEecCCceEeeccccceeeeeecCCCcCccc
Q 027745 70 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKK 149 (219)
Q Consensus 70 ~GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAGt~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~ 149 (219)
+||+|||.+||+||+|||||++||+|||||||||+||+|+.+ +++|++|||||||+|+|+.+|+||||+|||.+|.+++
T Consensus 1 iGN~lPL~~IP~Gt~I~NIE~~PG~Ggkl~RsAGt~A~Ii~k-~~~~~~vkLPSGe~r~i~~~c~AtiG~vsn~~~~~~~ 79 (147)
T d2j01d1 1 VGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGR-EGDYVILRLPSGELRKVHGECYATVGAVGNADHKNIV 79 (147)
T ss_dssp TTCEEEGGGSCTTCEEESEESSTTSCEEESCSSSCCEEECCC-BTTEEEEECTTSCEEEEETTSEEEESCCSCGGGGGCC
T ss_pred CcccccHhhCCCCCEEEEEEecCCCCceEEEeccceEEEEEe-cCCeEEEEecCCceEEecccceEEEeEecchhhhhhh
Confidence 699999999999999999999999999999999999999977 6889999999999999999999999999999999999
Q ss_pred cccccccccCCCCCccceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccCCCCc-cccC
Q 027745 150 LRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTASPKK-KKKL 217 (219)
Q Consensus 150 lgKAG~~R~lG~RP~VRGvAMNpvDHPHGGGeGks~~~~~~gr~~~sPWG~~tk~g~kTr~~~~-~~~~ 217 (219)
++|||++||+|+||+|||||||||||||||||||++ +|++|+||||+++| |+|||+++| .++|
T Consensus 80 ~gKAG~~r~~g~rP~VRGvaMNpvdHPhGGG~g~~~----~g~~~~spwG~~~k-g~ktRk~~k~~~~~ 143 (147)
T d2j01d1 80 LGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGRAP----RGRPPASPWGWQTK-GLKTRKRRKPSSRF 143 (147)
T ss_dssp CCSHHHHTTTTBCCCCCSSSSCTTTCSSCCSSSSCC----CSSSCBCTTCCBCS-SCCCSCTTSSCCSS
T ss_pred hhhhHHHHhccCccccceeeccCccCCCCCCCCCcC----CCCCCCCCCcccCC-CccCCCCCCCCCCe
Confidence 999999999999999999999999999999999986 46999999999999 999998755 4554
No 3
>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00 E-value=1e-58 Score=380.08 Aligned_cols=139 Identities=37% Similarity=0.629 Sum_probs=122.5
Q ss_pred CceecCCCCCCcceEeeeeeccCCCCceeecCCCcEEEeeecCCCeEEEEecCCceEeeccccceeeeeecCCCcCcccc
Q 027745 71 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKL 150 (219)
Q Consensus 71 GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAGt~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vsn~~~~~~~l 150 (219)
||+|||.+||+||+|||||++||+||||||||||||+|+.+ +++|++|||||||+|+|+++|+||||+|||.+|.++++
T Consensus 1 Gn~lpL~~IP~Gt~IhNIE~~pg~ggkl~RsAGt~A~ii~k-~~~~~~vkLPSGe~r~i~~~c~ATIG~vsn~~~~~~~~ 79 (147)
T d1vqoa1 1 GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTH-DRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPF 79 (147)
T ss_dssp TCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEEC-CSSCEEEECTTSCEEEECTTCEEEESCBSSTTGGGSCC
T ss_pred CCccchhhCCCCCEEEEEEecCCCCceEEEecCceEEEEEe-ccceEEEEecCCceEEEChhcceeeeeccCccchhhhh
Confidence 89999999999999999999999999999999999999987 68999999999999999999999999999999999999
Q ss_pred ccccccccC-----CCCCccceeecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCccccCCCC
Q 027745 151 RKAGQSRWL-----GRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTASPK 212 (219)
Q Consensus 151 gKAG~~R~l-----G~RP~VRGvAMNpvDHPHGGGeGks~~~~~~gr~~~sPWG~~tk~g~kTr~~~ 212 (219)
+|||+++|+ ++||+||||||||||||||||+|++... .....+.+|||+... +.++|+..
T Consensus 80 ~KAG~~~~~~r~~~~r~P~VRGvaMNpvDHPhGGG~~~~~~~-p~~~~~~~~~g~k~~-~i~~rrtg 144 (147)
T d1vqoa1 80 VKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGK-PKSISRNAPPGRKVG-DIASKRTG 144 (147)
T ss_dssp CSHHHHHHHHTTSSCCCSCCCGGGSCGGGCTTCCSSSCCCSS-CSEECTTCCTTTCCS-EETCSCCS
T ss_pred hhhhhhhhhhhhcCCcCCcccccccCCCcCCCCCCCCCCCCC-CCCCCCCCCCCCeec-ceeeccCC
Confidence 999987554 5579999999999999999999997521 011123468888776 67777654
No 4
>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.97 E-value=2e-33 Score=204.61 Aligned_cols=70 Identities=50% Similarity=0.952 Sum_probs=68.0
Q ss_pred CceecCCCCCCcceEeeeeeccCCCCceeecCCCcEEEeeecCCCeEEEEecCCceEeeccccceeeeeec
Q 027745 71 GSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVS 141 (219)
Q Consensus 71 GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAGt~A~Ii~k~~~~~v~IKLPSGe~r~i~~~C~AtIG~vs 141 (219)
||+|||++||+||+|||||++||+|||||||||+||+|+.+ +++|++|||||||+|+|+.+|+||||+|+
T Consensus 1 GN~~pl~~IP~Gt~I~niE~~pg~ggk~~RsAGt~a~ii~k-~~~~~~vkLpSge~r~i~~~c~AtIG~Vg 70 (70)
T d1rl2a1 1 GNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK-EGKYVIVRLASGEVRMILGKCRATVGEVG 70 (70)
T ss_dssp TCEEEGGGSCTTCEEESEESSTTSCEEESSSSSCCEEEEEE-ETTEEEEECTTSCEEEEETTSEEEESCCC
T ss_pred CCccchhhCCCCCEEEEEEeeccCCcEEEEccCceEEEEEE-eCCeeEEEeCCCCEEEECCcCeEEEeecC
Confidence 89999999999999999999999999999999999999977 68899999999999999999999999986
No 5
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=56.41 E-value=15 Score=24.29 Aligned_cols=55 Identities=16% Similarity=0.182 Sum_probs=40.5
Q ss_pred cCCCCceecCCCCCCcceEeeeee-ccCC-CCceeecCCCcEEEe-ee-cCCCeEEEEecCCceEeec
Q 027745 67 NSQIGSCMPLACMRIGTIIHNIEV-NPGQ-GGKLVRAAGTSAKIL-KE-PTSSFCLVRLPSGNEKLID 130 (219)
Q Consensus 67 ~~k~GN~lPL~~IP~GT~I~NIEl-~PG~-GgklaRSAGt~A~Ii-~k-~~~~~v~IKLPSGe~r~i~ 130 (219)
+++.|+.+-+..-| -.|-.+|. +||+ |+-++ ++. ++ .+++....+.||++...|+
T Consensus 13 ~lKkG~~i~~~g~p--~~V~~~~~~kpgk~G~a~~-------r~k~k~i~tG~~~e~~~~s~d~vevP 71 (71)
T d1bkba1 13 ELKEGSYVVIDGEP--CRVVEIEKSKTGKHGSAKA-------RIVAVGVFDGGKRTLSLPVDAQVEVP 71 (71)
T ss_dssp GCCTTCEEEETTEE--EEEEEEEEECCSTTSCCEE-------EEEEEETTTCCEEEEEEETTSEEEEC
T ss_pred HccCCCEEEECCEE--EEEEEEEEECCCCCCccEE-------EEEEEEeecCcEEEEEEcCCCEEeCC
Confidence 57999999999988 66777776 7888 54444 443 33 3678888999999877653
No 6
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=49.23 E-value=17 Score=23.73 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=40.9
Q ss_pred cCCCCceecCCCCCCcceEeeeee-ccCC-CCceeecCCCcEEEe-ee-cCCCeEEEEecCCceEeec
Q 027745 67 NSQIGSCMPLACMRIGTIIHNIEV-NPGQ-GGKLVRAAGTSAKIL-KE-PTSSFCLVRLPSGNEKLID 130 (219)
Q Consensus 67 ~~k~GN~lPL~~IP~GT~I~NIEl-~PG~-GgklaRSAGt~A~Ii-~k-~~~~~v~IKLPSGe~r~i~ 130 (219)
+++.|+++-+..-| -.|-.+|. +||+ |+-+ .++. ++ .+++....++||++...|+
T Consensus 10 ~lkkG~~i~~~g~p--~~V~e~~~~kpGk~G~a~-------~~~k~k~i~tG~~~e~~~~s~d~vevP 68 (69)
T d1iz6a1 10 KLKPGRYIIIDDEP--CRIVNITVSSPGKHGSAK-------ARIEAVGIFDGKVRSIVKPTSAEVDVP 68 (69)
T ss_dssp GCCTTSEEEETTEE--EEEEEEEECCCCTTSCCE-------EEEEEEETTTCCEEEEEEETTSEEEEE
T ss_pred HccCCCEEEECCEE--EEEEEEEEEcCCCcCccE-------EEEEEEEcccCCEEEEEEcCCCEEecc
Confidence 47999999998888 66777776 8887 5544 4443 33 3678888999999987664
No 7
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=30.52 E-value=50 Score=21.58 Aligned_cols=57 Identities=11% Similarity=0.170 Sum_probs=38.0
Q ss_pred cCCCCceecCCCCCCcceEeeeeeccCCCCceeecCCCcEEEe-ee-cCCCeEEEEecCCceEeec
Q 027745 67 NSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSAKIL-KE-PTSSFCLVRLPSGNEKLID 130 (219)
Q Consensus 67 ~~k~GN~lPL~~IP~GT~I~NIEl~PG~GgklaRSAGt~A~Ii-~k-~~~~~v~IKLPSGe~r~i~ 130 (219)
+++.|+.+-+..-|-=..=++. .+||++|+ ++.++. +. .++.......||++...++
T Consensus 14 ~lKkG~~i~~~g~p~~V~e~~~-~kpGk~G~------A~~r~k~kni~tG~~~e~~~~s~d~vevP 72 (73)
T d2eifa1 14 SLKVGQYVMIDGVPCEIVDISV-SKPGKHGG------AKARVVGIGIFEKVKKEFVAPTSSKVEVP 72 (73)
T ss_dssp GCCTTSEEEETTEEEEEEEEEE-CCCCSSSC------CEEEEEEEESSSCCEEEEEEETTSEEEEE
T ss_pred HccCCCEEEECCEEEEEEEEEE-ECCCCccc------EEEEEEEEEEecCcEEEEEEcCCCEEecc
Confidence 4789999999888843333333 57887543 344444 33 3677888899999876654
No 8
>d1br2a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=21.92 E-value=30 Score=21.28 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=15.4
Q ss_pred EEEeeecCCCeEEEEec-CCceEeeccc
Q 027745 106 AKILKEPTSSFCLVRLP-SGNEKLIDTR 132 (219)
Q Consensus 106 A~Ii~k~~~~~v~IKLP-SGe~r~i~~~ 132 (219)
|.|.++ .++.++|+|+ +|+.+.|..+
T Consensus 14 a~Ik~~-~Gd~vtV~~~~~Gk~~tvkkd 40 (46)
T d1br2a1 14 ASIKEE-KGDEVTVELQENGKKVTLSKD 40 (46)
T ss_dssp EEC-------CEEEEESSSCCEEEECST
T ss_pred EEEEec-cCCEEEEEEcCCCcEEEEcHH
Confidence 344444 5789999986 5899988764
No 9
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=19.07 E-value=21 Score=23.87 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=18.0
Q ss_pred CeEEEEecCCceEeeccccceeeeee
Q 027745 115 SFCLVRLPSGNEKLIDTRCRATIGTV 140 (219)
Q Consensus 115 ~~v~IKLPSGe~r~i~~~C~AtIG~v 140 (219)
..+.||||+|+.....-..-.+|+.|
T Consensus 15 t~I~iRlPdG~~~~~~F~~~~tl~dv 40 (89)
T d1i42a_ 15 TNIQIRLADGGRLVQKFNHSHRISDI 40 (89)
T ss_dssp EEEEEEETTTCCEEEEECSSSCGGGH
T ss_pred EEEEEEcCCCCEEEEEECCchhHHHH
Confidence 46789999998665554555666644
No 10
>d1skye2 b.49.1.1 (E:1-82) F1 ATP synthase beta subunit, domain 1 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=18.37 E-value=18 Score=24.85 Aligned_cols=12 Identities=42% Similarity=0.581 Sum_probs=10.3
Q ss_pred CccceeecCCCC
Q 027745 163 PVVRGVAMNPVD 174 (219)
Q Consensus 163 P~VRGvAMNpvD 174 (219)
=+||.+||.|.|
T Consensus 57 ~~VR~IAm~~Td 68 (82)
T d1skye2 57 DTVRTIAMASTD 68 (82)
T ss_dssp TEEEEEESSCCT
T ss_pred CeEEEEEecCcc
Confidence 479999999987
Done!