BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027747
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YL5|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A)
pdb|1YL5|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form A)
Length = 247
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 7/197 (3%)
Query: 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSI 86
VVIDFT V N++ G+ +VV E + ++ K + LIAP +I
Sbjct: 50 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 109
Query: 87 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 143
G++L A A+ + + E++E P+ D PS A + A ++ G N + ST
Sbjct: 110 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 169
Query: 144 DV-KARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 202
+ ARG + DG+ VH++ L GL + V F GE +I+HD D S +PG++LA+
Sbjct: 170 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 227
Query: 203 RKVVHLKNLVYGLEKFL 219
R++ L GLE L
Sbjct: 228 RRIAERPGLTVGLEPLL 244
>pdb|1YL6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B)
pdb|1YL6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) (Crystal Form B)
pdb|1YL7|A Chain A, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|B Chain B, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|C Chain C, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|D Chain D, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|E Chain E, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|F Chain F, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|G Chain G, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
pdb|1YL7|H Chain H, The Crystal Structure Of Mycobacterium Tuberculosis
Dihydrodipicolinate Reductase (Rv2773c) In Complex With
Nadh (Crystal Form C)
Length = 245
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 7/197 (3%)
Query: 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSI 86
VVIDFT V N++ G+ +VV E + ++ K + LIAP +I
Sbjct: 48 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 87 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 143
G++L A A+ + + E++E P+ D PS A + A ++ G N + ST
Sbjct: 108 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 167
Query: 144 DV-KARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 202
+ ARG + DG+ VH++ L GL + V F GE +I+HD D S +PG++LA+
Sbjct: 168 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 225
Query: 203 RKVVHLKNLVYGLEKFL 219
R++ L GLE L
Sbjct: 226 RRIAERPGLTVGLEPLL 242
>pdb|1C3V|A Chain A, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1C3V|B Chain B, Dihydrodipicolinate Reductase From Mycobacterium
Tuberculosis Complexed With Nadph And Pdc
pdb|1P9L|A Chain A, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
pdb|1P9L|B Chain B, Structure Of M. Tuberculosis Dihydrodipicolinate Reductase
In Complex With Nadh And 2,6 Pdc
Length = 245
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 7/197 (3%)
Query: 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF-CDKASMGCLIAPTLSI 86
VVIDFT V N++ G+ +VV E + ++ K + LIAP +I
Sbjct: 48 VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAI 107
Query: 87 GSILLQQAAISASFHYKNVEIVE-SRPNARDFPSPDATQIANNLSNL--GQIYNREDIST 143
G++L A A+ + + E++E P+ D PS A + A ++ G N + ST
Sbjct: 108 GAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATST 167
Query: 144 DV-KARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAI 202
+ ARG + DG+ VH++ L GL + V F GE +I+HD D S +PG++LA+
Sbjct: 168 SLPGARGADV--DGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAV 225
Query: 203 RKVVHLKNLVYGLEKFL 219
R++ L GLE L
Sbjct: 226 RRIAERPGLTVGLEPLL 242
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 39 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 86
Y + A F V+Y I E V A++AFC+K + C+ +I
Sbjct: 65 YITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIFVEEHNI 112
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 39 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80
Y + A F V+Y I E V A++AFC+K + C+
Sbjct: 65 YITMNGAYCFVGEEVIYKSAIPQEEVKAMAAFCEKKGVPCIF 106
>pdb|1X3U|A Chain A, Solution Structure Of The C-Terminal Transcriptional
Activator Domain Of Fixj From Sinorhizobium Melilot
Length = 79
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 140 DISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVY 174
D + D++AR Q L E +V S V+ GLP+ + Y
Sbjct: 5 DDANDIRARLQTLSERERQVLSAVVAGLPNKSIAY 39
>pdb|3N26|A Chain A, Cpn0482 : The Arginine Binding Protein From The Periplasm
Of Chlamydia Pneumoniae
Length = 246
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 177 RPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLE 216
RP E+ +I+ ITD++S G+I ++ K L + Y LE
Sbjct: 203 RPEEIQTIQQAITDLKS--EGVIQSLTKKWQLSEVAYELE 240
>pdb|1VM6|A Chain A, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|B Chain B, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|C Chain C, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
pdb|1VM6|D Chain D, Crystal Structure Of Dihydrodipicolinate Reductase
(Tm1520) From Thermotoga Maritima At 2.27 A Resolution
Length = 228
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 157 VRVHSMVLPGLPSSTTVYFSRPGEVYSIKH 186
V +HS+ + G+P V F GE IKH
Sbjct: 162 VPIHSLRVGGVPGDHVVVFGNIGETIEIKH 191
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
Length = 147
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 140 DISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGE 180
+I+ K R LG +V + V G PS T V F+R E
Sbjct: 70 EIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRE 110
>pdb|3VVJ|A Chain A, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|B Chain B, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
pdb|3VVJ|C Chain C, Structure Of Ovalbumin From Emu (Dromaius Novaehollandiae)
Length = 392
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 54 VYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA-AISASFHYKNVEIVES 110
VY+PH+++E L++ M L +P+ ++ I Q +S + H VEI E+
Sbjct: 281 VYLPHMKIEEKYNLTSVLVALGMTDLFSPSANLSGISTAQTLKMSEAIHGAYVEIYEA 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,567,965
Number of Sequences: 62578
Number of extensions: 197488
Number of successful extensions: 482
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 18
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)