Query 027747
Match_columns 219
No_of_seqs 114 out of 1021
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 14:33:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027747.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027747hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0289 DapB Dihydrodipicolina 100.0 9.6E-73 2.1E-77 494.3 20.4 202 3-219 53-264 (266)
2 TIGR00036 dapB dihydrodipicoli 100.0 3.3E-66 7.1E-71 456.5 23.3 202 5-219 54-265 (266)
3 PRK00048 dihydrodipicolinate r 100.0 5.9E-63 1.3E-67 433.4 23.2 206 5-219 46-255 (257)
4 TIGR02130 dapB_plant dihydrodi 100.0 8.9E-62 1.9E-66 429.7 20.6 197 6-219 48-269 (275)
5 PLN02775 Probable dihydrodipic 100.0 4.2E-60 9.2E-65 420.8 20.3 203 6-219 59-280 (286)
6 PF05173 DapB_C: Dihydrodipico 100.0 8.7E-45 1.9E-49 291.0 12.4 127 87-219 1-132 (132)
7 PF01113 DapB_N: Dihydrodipico 99.9 4.4E-22 9.6E-27 157.1 7.0 73 4-84 52-124 (124)
8 PRK08374 homoserine dehydrogen 98.5 1.7E-07 3.6E-12 85.8 6.1 82 12-97 82-163 (336)
9 PRK13303 L-aspartate dehydroge 98.1 1.5E-05 3.2E-10 70.5 9.3 76 6-88 48-125 (265)
10 TIGR03855 NAD_NadX aspartate d 97.8 0.00017 3.7E-09 62.9 10.2 117 4-129 21-149 (229)
11 PF03447 NAD_binding_3: Homose 97.8 4.1E-05 8.9E-10 59.0 4.8 71 6-80 44-116 (117)
12 PRK13304 L-aspartate dehydroge 97.6 0.0004 8.7E-09 61.4 9.5 79 5-89 47-127 (265)
13 PRK13301 putative L-aspartate 97.3 0.0016 3.4E-08 58.3 8.7 80 7-91 49-130 (267)
14 PF01408 GFO_IDH_MocA: Oxidore 97.1 0.0027 5.9E-08 48.2 7.9 73 4-80 45-118 (120)
15 PRK06270 homoserine dehydrogen 97.0 0.0021 4.4E-08 59.0 7.1 83 11-97 79-166 (341)
16 PRK05678 succinyl-CoA syntheta 96.7 0.0076 1.7E-07 54.4 8.4 78 5-90 49-129 (291)
17 PRK13302 putative L-aspartate 96.6 0.013 2.9E-07 52.0 9.3 75 8-89 56-130 (271)
18 TIGR01019 sucCoAalpha succinyl 96.6 0.013 2.7E-07 52.9 8.6 79 5-89 47-126 (286)
19 PTZ00187 succinyl-CoA syntheta 96.4 0.017 3.8E-07 52.8 8.7 80 6-91 73-154 (317)
20 PRK06349 homoserine dehydrogen 96.3 0.01 2.2E-07 56.0 6.6 84 7-94 58-142 (426)
21 PLN00125 Succinyl-CoA ligase [ 96.2 0.022 4.7E-07 51.8 8.3 80 5-90 53-134 (300)
22 COG1712 Predicted dinucleotide 96.0 0.043 9.4E-07 48.3 8.6 73 10-88 51-125 (255)
23 PLN02522 ATP citrate (pro-S)-l 96.0 0.031 6.7E-07 55.3 8.5 76 5-84 61-138 (608)
24 PF13380 CoA_binding_2: CoA bi 95.9 0.027 5.9E-07 43.8 6.2 74 5-89 41-114 (116)
25 PRK11579 putative oxidoreducta 95.7 0.12 2.6E-06 46.9 10.4 87 6-96 49-138 (346)
26 COG0074 SucD Succinyl-CoA synt 95.4 0.066 1.4E-06 48.4 7.5 74 5-83 49-123 (293)
27 TIGR02717 AcCoA-syn-alpha acet 95.3 0.059 1.3E-06 51.2 7.4 76 5-88 50-132 (447)
28 PRK10206 putative oxidoreducta 95.3 0.18 3.9E-06 46.1 10.2 86 7-96 50-138 (344)
29 PRK04207 glyceraldehyde-3-phos 95.0 0.039 8.5E-07 50.7 5.2 103 6-121 65-175 (341)
30 PF03435 Saccharop_dh: Sacchar 94.6 0.08 1.7E-06 48.6 6.0 72 12-91 60-131 (386)
31 PRK06091 membrane protein FdrA 94.2 0.25 5.3E-06 48.5 8.8 75 6-84 101-175 (555)
32 COG0673 MviM Predicted dehydro 93.7 0.32 6.9E-06 43.2 7.9 79 5-87 50-130 (342)
33 PRK06392 homoserine dehydrogen 93.5 0.15 3.2E-06 46.8 5.5 78 12-94 73-154 (326)
34 PLN02819 lysine-ketoglutarate 93.3 0.89 1.9E-05 47.9 11.5 84 10-98 636-721 (1042)
35 COG1748 LYS9 Saccharopine dehy 93.1 0.35 7.5E-06 45.6 7.3 84 10-103 59-142 (389)
36 PRK06813 homoserine dehydrogen 92.7 0.22 4.9E-06 46.1 5.5 70 25-94 86-160 (346)
37 TIGR01761 thiaz-red thiazoliny 91.4 1.4 3.1E-05 40.7 9.1 87 4-98 47-137 (343)
38 KOG1255 Succinyl-CoA synthetas 91.2 0.78 1.7E-05 41.0 6.9 77 4-84 78-155 (329)
39 PF02593 dTMP_synthase: Thymid 90.9 2.9 6.3E-05 36.4 10.0 117 10-131 39-167 (217)
40 PRK09436 thrA bifunctional asp 88.6 1.3 2.8E-05 45.4 7.1 74 25-98 547-623 (819)
41 TIGR03376 glycerol3P_DH glycer 88.3 2 4.3E-05 39.7 7.5 78 7-90 70-155 (342)
42 PF00107 ADH_zinc_N: Zinc-bind 87.7 0.84 1.8E-05 34.7 4.0 82 13-98 46-128 (130)
43 PF13407 Peripla_BP_4: Peripla 87.2 3.9 8.4E-05 34.3 8.2 73 12-99 47-120 (257)
44 PF01210 NAD_Gly3P_dh_N: NAD-d 86.9 2.2 4.9E-05 34.4 6.3 77 6-88 56-139 (157)
45 PRK14618 NAD(P)H-dependent gly 86.7 1.8 3.8E-05 39.0 6.1 75 7-88 62-141 (328)
46 PRK08223 hypothetical protein; 84.2 2.4 5.2E-05 38.4 5.7 40 12-57 110-152 (287)
47 COG0240 GpsA Glycerol-3-phosph 83.7 3.5 7.7E-05 38.1 6.6 78 6-90 58-143 (329)
48 TIGR03215 ac_ald_DH_ac acetald 83.0 8.2 0.00018 34.8 8.6 83 5-93 47-134 (285)
49 PRK08300 acetaldehyde dehydrog 83.0 5.8 0.00013 36.2 7.7 101 5-112 50-154 (302)
50 PLN02700 homoserine dehydrogen 82.2 3.6 7.8E-05 38.7 6.1 72 25-97 109-180 (377)
51 PF00899 ThiF: ThiF family; I 80.5 2.7 5.8E-05 32.8 4.1 33 25-57 92-125 (135)
52 PTZ00345 glycerol-3-phosphate 80.1 6 0.00013 36.9 6.9 77 6-88 80-166 (365)
53 COG1832 Predicted CoA-binding 80.1 6 0.00013 32.3 6.0 53 5-63 59-111 (140)
54 PF12738 PTCB-BRCT: twin BRCT 80.0 0.49 1.1E-05 32.2 -0.3 37 52-90 1-37 (63)
55 PRK07535 methyltetrahydrofolat 79.9 5.8 0.00013 35.2 6.5 57 26-85 70-126 (261)
56 PF02629 CoA_binding: CoA bind 79.3 4.6 9.9E-05 29.9 4.8 48 5-56 46-93 (96)
57 PRK09466 metL bifunctional asp 79.1 4.9 0.00011 41.4 6.4 66 27-92 543-611 (810)
58 PRK04452 acetyl-CoA decarbonyl 78.8 13 0.00028 34.3 8.4 69 27-101 126-199 (319)
59 PF07994 NAD_binding_5: Myo-in 78.6 4 8.6E-05 37.1 5.0 64 11-79 136-229 (295)
60 PRK07634 pyrroline-5-carboxyla 78.6 17 0.00036 30.9 8.7 75 5-89 52-129 (245)
61 cd00755 YgdL_like Family of ac 78.5 11 0.00025 32.8 7.7 39 12-55 94-133 (231)
62 cd00423 Pterin_binding Pterin 78.3 8 0.00017 33.9 6.8 56 25-86 76-131 (258)
63 TIGR02355 moeB molybdopterin s 77.2 4.1 9E-05 35.5 4.6 35 25-59 114-150 (240)
64 TIGR01692 HIBADH 3-hydroxyisob 77.0 15 0.00034 32.3 8.3 70 6-82 39-115 (288)
65 PRK05428 HPr kinase/phosphoryl 76.9 10 0.00022 34.7 7.2 63 35-101 68-130 (308)
66 COG2099 CobK Precorrin-6x redu 76.8 4.7 0.0001 36.0 4.9 78 13-98 58-147 (257)
67 TIGR01921 DAP-DH diaminopimela 76.6 15 0.00033 33.8 8.3 85 6-96 47-133 (324)
68 PF07085 DRTGG: DRTGG domain; 76.5 3.1 6.8E-05 31.2 3.2 67 13-88 31-98 (105)
69 TIGR00715 precor6x_red precorr 76.3 4.1 8.9E-05 36.1 4.4 40 12-55 56-98 (256)
70 PF02571 CbiJ: Precorrin-6x re 76.1 3.8 8.3E-05 36.2 4.1 39 12-54 57-98 (249)
71 PRK08057 cobalt-precorrin-6x r 75.7 4.3 9.2E-05 35.9 4.3 40 12-55 56-98 (248)
72 PRK08328 hypothetical protein; 75.5 5.8 0.00013 34.3 5.1 33 25-57 118-151 (231)
73 cd01485 E1-1_like Ubiquitin ac 75.3 6.4 0.00014 33.2 5.2 33 25-57 113-146 (198)
74 COG1179 Dinucleotide-utilizing 74.9 12 0.00025 33.6 6.8 40 11-55 112-152 (263)
75 PRK04165 acetyl-CoA decarbonyl 74.9 12 0.00027 35.9 7.5 69 26-101 156-224 (450)
76 TIGR00679 hpr-ser Hpr(Ser) kin 74.8 13 0.00027 34.1 7.2 75 36-112 69-146 (304)
77 PRK00094 gpsA NAD(P)H-dependen 74.8 8.7 0.00019 33.9 6.1 74 6-85 58-139 (325)
78 TIGR03450 mycothiol_INO1 inosi 74.5 10 0.00022 35.3 6.6 78 12-96 114-197 (351)
79 PRK14851 hypothetical protein; 74.5 6 0.00013 39.9 5.5 39 12-56 126-167 (679)
80 PF02603 Hpr_kinase_N: HPr Ser 73.9 3.4 7.3E-05 32.6 2.9 50 35-86 67-116 (127)
81 PF14226 DIOX_N: non-haem diox 73.4 5.8 0.00013 29.7 4.1 37 64-102 17-53 (116)
82 PF10087 DUF2325: Uncharacteri 73.2 10 0.00022 28.1 5.3 37 51-87 50-87 (97)
83 cd00477 FTHFS Formyltetrahydro 73.1 15 0.00033 36.0 7.6 60 37-96 344-406 (524)
84 PRK07878 molybdopterin biosynt 72.9 6.9 0.00015 36.6 5.2 33 25-57 132-165 (392)
85 COG0460 ThrA Homoserine dehydr 72.7 8.5 0.00019 35.6 5.6 73 24-96 77-153 (333)
86 KOG2741 Dimeric dihydrodiol de 72.5 15 0.00033 34.2 7.2 97 7-110 58-158 (351)
87 cd00951 KDGDH 5-dehydro-4-deox 72.4 14 0.0003 32.9 6.9 64 35-100 20-92 (289)
88 PRK07877 hypothetical protein; 71.5 6.3 0.00014 40.1 4.8 40 12-57 189-229 (722)
89 cd01487 E1_ThiF_like E1_ThiF_l 71.4 9.6 0.00021 31.5 5.2 31 25-55 88-120 (174)
90 cd00757 ThiF_MoeB_HesA_family 71.4 8.8 0.00019 32.9 5.2 34 50-84 112-145 (228)
91 COG2984 ABC-type uncharacteriz 71.1 25 0.00055 32.5 8.3 91 24-119 87-204 (322)
92 PF10087 DUF2325: Uncharacteri 70.9 13 0.00027 27.6 5.3 37 25-61 48-88 (97)
93 PRK05597 molybdopterin biosynt 70.9 8.2 0.00018 35.6 5.2 32 25-56 118-150 (355)
94 PRK05690 molybdopterin biosynt 70.8 6.8 0.00015 34.2 4.4 33 25-57 122-155 (245)
95 PRK07411 hypothetical protein; 70.7 7.6 0.00016 36.3 4.9 36 25-60 128-165 (390)
96 PF06819 Arc_PepC: Archaeal Pe 70.6 10 0.00023 29.7 4.9 47 28-77 51-105 (110)
97 cd01492 Aos1_SUMO Ubiquitin ac 70.6 11 0.00024 31.7 5.6 36 25-60 110-147 (197)
98 cd00739 DHPS DHPS subgroup of 70.2 16 0.00035 32.3 6.7 53 25-83 76-128 (257)
99 TIGR02356 adenyl_thiF thiazole 70.1 9.5 0.00021 32.2 5.0 18 66-83 127-144 (202)
100 PRK13505 formate--tetrahydrofo 70.0 10 0.00022 37.5 5.7 55 37-91 360-417 (557)
101 TIGR01768 GGGP-family geranylg 70.0 9.5 0.00021 33.3 5.1 46 36-81 14-61 (223)
102 PRK14852 hypothetical protein; 69.4 8.7 0.00019 40.4 5.4 40 12-57 415-457 (989)
103 COG1810 Uncharacterized protei 69.3 25 0.00054 30.8 7.4 115 11-131 44-170 (224)
104 PF00809 Pterin_bind: Pterin b 69.2 8.1 0.00018 32.9 4.4 54 25-84 72-125 (210)
105 PF03446 NAD_binding_2: NAD bi 69.1 16 0.00035 29.4 6.0 70 6-82 44-119 (163)
106 PF10566 Glyco_hydro_97: Glyco 68.3 17 0.00037 32.7 6.5 54 34-87 30-98 (273)
107 cd03174 DRE_TIM_metallolyase D 68.3 27 0.00059 29.8 7.6 79 34-114 113-200 (265)
108 PRK14046 malate--CoA ligase su 68.1 39 0.00086 31.7 9.1 72 24-98 309-388 (392)
109 cd06300 PBP1_ABC_sugar_binding 68.0 37 0.0008 28.5 8.3 32 24-55 59-91 (272)
110 PLN03194 putative disease resi 68.0 32 0.0007 29.4 7.7 108 24-131 25-146 (187)
111 PRK13507 formate--tetrahydrofo 67.0 21 0.00046 35.4 7.2 59 38-96 390-451 (587)
112 PRK13397 3-deoxy-7-phosphohept 66.6 34 0.00073 30.5 7.9 87 32-118 132-232 (250)
113 cd00740 MeTr MeTr subgroup of 66.3 16 0.00034 32.3 5.8 55 27-83 72-127 (252)
114 PRK12475 thiamine/molybdopteri 66.1 11 0.00024 34.6 5.0 39 12-56 109-148 (338)
115 PRK11880 pyrroline-5-carboxyla 66.0 21 0.00046 30.8 6.5 55 5-65 48-103 (267)
116 PF04131 NanE: Putative N-acet 65.8 32 0.0007 29.5 7.3 76 5-84 46-153 (192)
117 cd06305 PBP1_methylthioribose_ 65.4 46 0.001 27.8 8.4 32 25-56 55-87 (273)
118 PRK06928 pyrroline-5-carboxyla 65.4 35 0.00076 30.0 7.9 71 7-88 52-126 (277)
119 cd01483 E1_enzyme_family Super 65.0 19 0.00042 28.1 5.6 33 25-57 89-122 (143)
120 PLN02688 pyrroline-5-carboxyla 64.9 32 0.0007 29.6 7.4 71 5-86 47-121 (266)
121 PTZ00386 formyl tetrahydrofola 64.9 24 0.00052 35.3 7.2 58 38-95 426-488 (625)
122 PF01248 Ribosomal_L7Ae: Ribos 64.4 17 0.00036 26.6 4.8 45 39-83 21-66 (95)
123 PRK03620 5-dehydro-4-deoxygluc 64.3 40 0.00088 30.2 8.2 47 36-82 28-83 (303)
124 PRK05600 thiamine biosynthesis 64.2 12 0.00026 34.8 4.9 40 12-57 124-164 (370)
125 cd06301 PBP1_rhizopine_binding 64.2 54 0.0012 27.4 8.6 31 25-55 56-87 (272)
126 PF13671 AAA_33: AAA domain; P 64.2 23 0.00051 26.9 5.8 41 37-77 58-98 (143)
127 PF07287 DUF1446: Protein of u 63.9 18 0.00039 33.9 5.9 42 36-77 58-100 (362)
128 PRK08762 molybdopterin biosynt 63.7 13 0.00028 34.4 5.0 33 25-57 225-258 (376)
129 PRK08644 thiamine biosynthesis 63.6 15 0.00032 31.4 4.9 31 25-55 117-149 (212)
130 PRK13601 putative L7Ae-like ri 63.1 25 0.00054 25.9 5.5 33 48-80 23-55 (82)
131 cd00953 KDG_aldolase KDG (2-ke 63.0 26 0.00057 31.0 6.6 34 35-68 19-58 (279)
132 PRK07679 pyrroline-5-carboxyla 62.6 52 0.0011 28.8 8.4 71 5-85 51-125 (279)
133 PRK12595 bifunctional 3-deoxy- 62.4 55 0.0012 30.5 8.9 82 32-113 235-326 (360)
134 COG0329 DapA Dihydrodipicolina 62.1 31 0.00068 31.1 7.0 46 35-80 24-78 (299)
135 PF01497 Peripla_BP_2: Peripla 62.0 25 0.00053 29.1 6.0 57 10-72 50-107 (238)
136 PRK15116 sulfur acceptor prote 62.0 17 0.00037 32.5 5.2 39 42-81 114-152 (268)
137 PRK07531 bifunctional 3-hydrox 61.6 23 0.00051 34.0 6.5 115 7-131 68-198 (495)
138 TIGR03531 selenium_SpcS O-phos 61.5 24 0.00052 33.8 6.5 61 34-94 190-254 (444)
139 PRK07688 thiamine/molybdopteri 61.5 14 0.00029 34.1 4.6 32 25-56 116-148 (339)
140 PRK12439 NAD(P)H-dependent gly 61.3 43 0.00093 30.5 7.9 75 7-87 65-146 (341)
141 PRK06476 pyrroline-5-carboxyla 61.2 42 0.00091 28.9 7.5 72 6-86 48-120 (258)
142 KOG2018 Predicted dinucleotide 60.8 27 0.00059 32.7 6.3 68 11-84 156-246 (430)
143 PF01268 FTHFS: Formate--tetra 60.7 13 0.00027 36.8 4.4 61 38-98 360-427 (557)
144 TIGR01769 GGGP geranylgeranylg 60.0 25 0.00055 30.2 5.8 45 36-80 11-58 (205)
145 PRK12738 kbaY tagatose-bisphos 59.9 22 0.00048 32.2 5.6 56 25-80 17-79 (286)
146 PRK01018 50S ribosomal protein 59.9 38 0.00082 25.5 6.1 27 51-77 34-60 (99)
147 PRK07680 late competence prote 59.2 58 0.0013 28.4 8.1 70 6-86 49-121 (273)
148 COG1879 RbsB ABC-type sugar tr 59.1 50 0.0011 29.0 7.8 73 12-99 83-156 (322)
149 COG4091 Predicted homoserine d 58.6 20 0.00043 34.0 5.1 88 6-99 86-174 (438)
150 PTZ00106 60S ribosomal protein 58.6 37 0.0008 26.2 6.0 32 48-79 40-71 (108)
151 PRK09195 gatY tagatose-bisphos 58.3 32 0.0007 31.1 6.4 53 28-80 21-79 (284)
152 PF07755 DUF1611: Protein of u 58.2 13 0.00029 33.9 3.9 115 4-133 17-141 (301)
153 COG0191 Fba Fructose/tagatose 58.2 28 0.0006 31.7 5.9 56 25-80 17-80 (286)
154 COG3977 Alanine-alpha-ketoisov 57.9 2.6 5.7E-05 39.0 -0.7 53 26-82 165-219 (417)
155 PRK13600 putative ribosomal pr 57.9 36 0.00078 25.3 5.5 47 38-84 18-64 (84)
156 TIGR03249 KdgD 5-dehydro-4-deo 57.7 84 0.0018 27.9 9.0 48 35-82 25-81 (296)
157 PRK13506 formate--tetrahydrofo 57.5 40 0.00087 33.5 7.2 59 38-96 382-444 (578)
158 TIGR03569 NeuB_NnaB N-acetylne 57.3 45 0.00098 30.7 7.3 9 104-112 216-224 (329)
159 cd04949 GT1_gtfA_like This fam 57.0 25 0.00054 31.1 5.5 42 11-58 270-311 (372)
160 COG0076 GadB Glutamate decarbo 56.6 14 0.00029 35.6 3.9 53 35-89 195-251 (460)
161 TIGR00381 cdhD CO dehydrogenas 56.5 50 0.0011 31.3 7.5 50 37-86 175-227 (389)
162 PRK08185 hypothetical protein; 56.4 37 0.00081 30.6 6.5 53 28-80 16-73 (283)
163 COG1646 Predicted phosphate-bi 56.2 30 0.00065 30.7 5.6 49 36-84 28-79 (240)
164 PRK14620 NAD(P)H-dependent gly 56.0 55 0.0012 29.2 7.5 75 7-86 58-140 (326)
165 cd05017 SIS_PGI_PMI_1 The memb 55.6 51 0.0011 25.0 6.4 52 25-82 43-97 (119)
166 PF00701 DHDPS: Dihydrodipicol 55.6 26 0.00055 30.9 5.3 47 34-80 20-75 (289)
167 PLN02759 Formate--tetrahydrofo 55.5 39 0.00085 33.9 6.8 94 39-133 440-558 (637)
168 TIGR03603 cyclo_dehy_ocin bact 55.5 20 0.00044 32.7 4.7 40 12-57 144-186 (318)
169 PF03599 CdhD: CO dehydrogenas 55.3 44 0.00095 31.7 6.9 70 28-103 101-170 (386)
170 TIGR02313 HpaI-NOT-DapA 2,4-di 55.1 30 0.00066 30.9 5.7 32 35-66 20-57 (294)
171 PRK15447 putative protease; Pr 54.9 65 0.0014 29.0 7.8 72 12-86 16-99 (301)
172 PRK03170 dihydrodipicolinate s 54.7 84 0.0018 27.7 8.4 23 36-58 22-46 (292)
173 KOG2017 Molybdopterin synthase 54.4 12 0.00027 35.2 3.1 47 11-64 148-196 (427)
174 cd06312 PBP1_ABC_sugar_binding 54.3 89 0.0019 26.2 8.3 32 25-56 57-89 (271)
175 cd06267 PBP1_LacI_sugar_bindin 53.9 84 0.0018 25.5 7.8 33 25-58 55-87 (264)
176 cd01538 PBP1_ABC_xylose_bindin 53.9 55 0.0012 28.0 7.0 93 25-119 190-283 (288)
177 PLN03176 flavanone-3-hydroxyla 53.8 31 0.00067 27.0 4.9 37 64-102 57-93 (120)
178 PRK14619 NAD(P)H-dependent gly 53.4 37 0.00081 30.2 6.0 71 11-87 39-117 (308)
179 COG0514 RecQ Superfamily II DN 53.4 26 0.00057 34.9 5.3 64 28-91 233-297 (590)
180 PRK07315 fructose-bisphosphate 53.3 49 0.0011 29.9 6.8 70 12-82 5-84 (293)
181 cd01391 Periplasmic_Binding_Pr 53.2 1.1E+02 0.0023 24.4 8.2 34 25-58 58-91 (269)
182 cd01486 Apg7 Apg7 is an E1-lik 53.1 23 0.0005 32.5 4.6 44 12-61 101-145 (307)
183 cd03811 GT1_WabH_like This fam 53.1 67 0.0015 26.7 7.2 65 11-88 255-319 (353)
184 PRK12857 fructose-1,6-bisphosp 53.0 56 0.0012 29.5 7.0 68 12-80 5-79 (284)
185 cd00408 DHDPS-like Dihydrodipi 52.9 37 0.0008 29.7 5.8 47 34-80 16-71 (281)
186 TIGR01381 E1_like_apg7 E1-like 52.9 23 0.00049 35.8 4.8 44 12-61 441-485 (664)
187 PF01297 TroA: Periplasmic sol 52.9 42 0.00091 28.9 6.1 23 59-81 183-205 (256)
188 cd01489 Uba2_SUMO Ubiquitin ac 52.3 33 0.00071 31.4 5.5 35 25-59 90-126 (312)
189 PRK07998 gatY putative fructos 51.6 45 0.00097 30.2 6.2 56 25-80 17-79 (283)
190 PRK12737 gatY tagatose-bisphos 51.5 66 0.0014 29.0 7.2 68 12-80 5-79 (284)
191 PF03102 NeuB: NeuB family; I 51.4 32 0.0007 30.3 5.1 40 32-71 95-135 (241)
192 PF00534 Glycos_transf_1: Glyc 51.3 29 0.00062 27.1 4.4 59 12-83 85-143 (172)
193 COG2759 MIS1 Formyltetrahydrof 51.2 31 0.00068 33.7 5.3 92 39-131 359-474 (554)
194 cd00947 TBP_aldolase_IIB Tagat 51.1 38 0.00083 30.5 5.6 52 29-80 17-74 (276)
195 TIGR01859 fruc_bis_ald_ fructo 50.6 65 0.0014 28.9 7.0 56 28-83 19-82 (282)
196 PLN02254 gibberellin 3-beta-di 50.5 33 0.00071 31.8 5.3 42 29-71 59-100 (358)
197 PF02421 FeoB_N: Ferrous iron 50.5 24 0.00052 29.0 3.9 59 24-82 77-142 (156)
198 TIGR01496 DHPS dihydropteroate 50.4 36 0.00077 30.0 5.3 50 27-83 77-126 (257)
199 PRK04169 geranylgeranylglycery 50.4 37 0.00081 29.8 5.3 39 43-81 26-66 (232)
200 cd06308 PBP1_sensor_kinase_lik 50.3 1.1E+02 0.0023 25.7 8.1 32 25-56 56-88 (270)
201 PRK15052 D-tagatose-1,6-bispho 50.3 33 0.00071 32.9 5.2 50 29-78 18-79 (421)
202 TIGR01361 DAHP_synth_Bsub phos 50.1 1E+02 0.0023 27.2 8.2 80 34-113 144-233 (260)
203 PRK11559 garR tartronate semia 50.0 1E+02 0.0022 26.9 8.2 72 6-84 45-123 (296)
204 PRK13602 putative ribosomal pr 49.9 54 0.0012 23.9 5.4 34 48-81 26-59 (82)
205 cd01143 YvrC Periplasmic bindi 49.0 70 0.0015 25.6 6.5 17 41-57 52-68 (195)
206 cd00952 CHBPH_aldolase Trans-o 48.9 40 0.00086 30.4 5.5 13 114-126 148-160 (309)
207 cd00762 NAD_bind_malic_enz NAD 48.9 14 0.0003 33.0 2.4 31 48-81 105-139 (254)
208 TIGR03470 HpnH hopanoid biosyn 48.8 48 0.001 30.0 6.0 52 36-87 149-204 (318)
209 TIGR01520 FruBisAldo_II_A fruc 48.7 37 0.0008 31.8 5.2 69 11-80 13-104 (357)
210 cd06311 PBP1_ABC_sugar_binding 48.3 1.3E+02 0.0029 25.1 8.4 30 25-54 60-90 (274)
211 PRK15458 tagatose 6-phosphate 48.2 40 0.00087 32.3 5.5 50 29-78 21-82 (426)
212 cd06269 PBP1_glutamate_recepto 47.8 40 0.00087 28.0 5.0 37 25-61 195-234 (298)
213 cd00950 DHDPS Dihydrodipicolin 47.8 49 0.0011 29.0 5.8 33 35-67 20-58 (284)
214 TIGR01546 GAPDH-II_archae glyc 47.8 28 0.00061 32.2 4.4 86 5-102 61-153 (333)
215 cd00453 FTBP_aldolase_II Fruct 47.8 53 0.0012 30.6 6.1 31 28-58 16-46 (340)
216 TIGR03863 PQQ_ABC_bind ABC tra 47.7 68 0.0015 29.2 6.9 46 33-80 43-88 (347)
217 cd01149 HutB Hemin binding pro 47.6 74 0.0016 26.6 6.7 39 11-55 49-87 (235)
218 PRK00696 sucC succinyl-CoA syn 47.4 1.2E+02 0.0026 28.0 8.6 76 16-94 301-384 (388)
219 TIGR00683 nanA N-acetylneurami 47.4 33 0.00072 30.6 4.7 13 114-126 141-153 (290)
220 PRK06806 fructose-bisphosphate 47.3 61 0.0013 29.1 6.3 68 12-80 5-79 (281)
221 PRK05835 fructose-bisphosphate 47.2 63 0.0014 29.6 6.5 53 28-80 20-79 (307)
222 cd06341 PBP1_ABC_ligand_bindin 47.2 1.3E+02 0.0027 26.4 8.3 59 12-71 176-236 (341)
223 TIGR01858 tag_bisphos_ald clas 47.2 47 0.001 30.0 5.6 53 28-80 19-77 (282)
224 cd01539 PBP1_GGBP Periplasmic 47.1 1.1E+02 0.0023 26.6 7.8 31 24-54 56-87 (303)
225 cd06334 PBP1_ABC_ligand_bindin 47.0 1.2E+02 0.0026 27.2 8.3 101 24-134 194-305 (351)
226 PRK07714 hypothetical protein; 46.8 71 0.0015 23.9 5.8 9 45-53 56-64 (100)
227 TIGR01282 nifD nitrogenase mol 46.7 25 0.00054 33.7 4.0 71 25-102 233-303 (466)
228 PRK09197 fructose-bisphosphate 46.6 40 0.00086 31.5 5.1 68 12-80 8-97 (350)
229 TIGR02810 agaZ_gatZ D-tagatose 46.6 43 0.00094 32.0 5.4 50 29-78 17-78 (420)
230 TIGR03659 IsdE heme ABC transp 46.4 83 0.0018 27.5 7.0 55 10-71 81-135 (289)
231 cd06375 PBP1_mGluR_groupII Lig 46.3 33 0.00072 32.4 4.7 38 24-61 231-269 (458)
232 cd01537 PBP1_Repressors_Sugar_ 45.9 1.2E+02 0.0026 24.6 7.5 32 25-57 55-87 (264)
233 cd00636 TroA-like Helical back 45.8 1.1E+02 0.0024 22.3 6.7 42 10-58 51-92 (148)
234 cd06313 PBP1_ABC_sugar_binding 45.8 1.6E+02 0.0035 24.9 8.5 32 24-55 54-86 (272)
235 PF06074 DUF935: Protein of un 45.7 43 0.00092 32.4 5.4 50 37-86 222-275 (516)
236 PRK03379 vitamin B12-transport 45.2 73 0.0016 27.5 6.4 39 11-55 63-101 (260)
237 cd01020 TroA_b Metal binding p 45.2 61 0.0013 28.3 5.9 27 59-85 190-217 (264)
238 PRK12490 6-phosphogluconate de 45.1 1.2E+02 0.0027 26.8 7.9 71 5-79 42-116 (299)
239 cd06319 PBP1_ABC_sugar_binding 45.0 1.7E+02 0.0036 24.4 8.4 32 24-55 54-86 (277)
240 PF04015 DUF362: Domain of unk 44.6 48 0.001 27.6 5.0 30 32-61 19-49 (206)
241 PF02875 Mur_ligase_C: Mur lig 44.1 60 0.0013 23.3 4.9 59 25-83 13-80 (91)
242 PF01565 FAD_binding_4: FAD bi 44.1 45 0.00096 25.6 4.4 36 26-61 1-36 (139)
243 PRK13397 3-deoxy-7-phosphohept 43.8 1.4E+02 0.0029 26.7 7.9 30 36-67 66-95 (250)
244 TIGR02128 G6PI_arch bifunction 43.8 1.6E+02 0.0034 26.7 8.5 100 25-131 66-176 (308)
245 cd01536 PBP1_ABC_sugar_binding 43.6 1.8E+02 0.0039 23.7 8.7 33 25-57 55-88 (267)
246 PRK08610 fructose-bisphosphate 43.5 89 0.0019 28.3 6.8 53 28-80 21-82 (286)
247 PLN02156 gibberellin 2-beta-di 43.2 41 0.00088 30.9 4.7 42 29-71 29-70 (335)
248 cd06321 PBP1_ABC_sugar_binding 43.2 1.8E+02 0.004 24.1 8.5 34 24-57 56-90 (271)
249 TIGR01505 tartro_sem_red 2-hyd 43.1 1.7E+02 0.0037 25.6 8.5 70 6-82 42-118 (291)
250 cd06318 PBP1_ABC_sugar_binding 43.1 1.7E+02 0.0036 24.5 8.2 31 24-54 54-85 (282)
251 TIGR00167 cbbA ketose-bisphosp 43.1 72 0.0016 28.8 6.1 68 12-80 5-82 (288)
252 PRK09599 6-phosphogluconate de 42.8 1.6E+02 0.0034 26.1 8.3 77 5-85 42-122 (301)
253 PRK13398 3-deoxy-7-phosphohept 42.7 64 0.0014 28.8 5.7 60 34-93 39-109 (266)
254 TIGR01663 PNK-3'Pase polynucle 42.6 68 0.0015 31.6 6.3 43 38-80 409-451 (526)
255 cd06320 PBP1_allose_binding Pe 42.5 2E+02 0.0043 24.0 9.0 31 25-55 57-88 (275)
256 cd06347 PBP1_ABC_ligand_bindin 42.5 1.5E+02 0.0033 25.4 8.1 41 24-64 190-231 (334)
257 PRK15452 putative protease; Pr 42.4 2E+02 0.0043 27.7 9.3 72 12-86 12-100 (443)
258 TIGR02919 accessory Sec system 42.3 34 0.00074 32.7 4.1 37 12-54 340-376 (438)
259 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 42.1 1.5E+02 0.0033 22.8 7.3 67 25-91 74-155 (166)
260 cd01485 E1-1_like Ubiquitin ac 42.0 52 0.0011 27.7 4.8 37 49-86 113-149 (198)
261 PF01116 F_bP_aldolase: Fructo 42.0 42 0.00092 30.2 4.5 52 29-80 21-78 (287)
262 cd01424 MGS_CPS_II Methylglyox 41.9 54 0.0012 24.5 4.5 44 41-84 59-104 (110)
263 PF13466 STAS_2: STAS domain 41.9 58 0.0013 22.5 4.4 35 26-62 27-69 (80)
264 cd06302 PBP1_LsrB_Quorum_Sensi 41.8 1.8E+02 0.0038 25.1 8.3 30 25-54 56-86 (298)
265 PRK06801 hypothetical protein; 41.7 1E+02 0.0022 27.9 6.9 68 12-80 5-79 (286)
266 cd01832 SGNH_hydrolase_like_1 41.5 1.7E+02 0.0038 23.0 7.8 21 91-112 133-153 (185)
267 TIGR00674 dapA dihydrodipicoli 41.3 73 0.0016 28.1 5.9 47 34-80 17-72 (285)
268 KOG0780 Signal recognition par 41.1 80 0.0017 30.4 6.3 72 39-111 119-192 (483)
269 cd06310 PBP1_ABC_sugar_binding 41.1 2.1E+02 0.0045 23.8 8.5 31 25-55 57-88 (273)
270 PRK15114 tRNA (cytidine/uridin 41.1 54 0.0012 28.8 4.9 78 7-93 60-154 (245)
271 TIGR01921 DAP-DH diaminopimela 41.0 2.9E+02 0.0064 25.5 12.6 185 25-218 84-306 (324)
272 PF05889 SLA_LP_auto_ag: Solub 41.0 41 0.00089 31.9 4.3 67 35-101 141-211 (389)
273 COG4359 Uncharacterized conser 41.0 54 0.0012 28.5 4.6 60 10-77 58-117 (220)
274 PRK06683 hypothetical protein; 40.9 95 0.0021 22.7 5.5 35 48-82 26-60 (82)
275 cd00959 DeoC 2-deoxyribose-5-p 40.7 91 0.002 26.2 6.1 27 53-79 122-148 (203)
276 cd01879 FeoB Ferrous iron tran 40.7 96 0.0021 23.4 5.8 37 25-61 74-113 (158)
277 cd01019 ZnuA Zinc binding prot 40.5 1.5E+02 0.0033 26.2 7.8 40 46-85 194-239 (286)
278 COG1038 PycA Pyruvate carboxyl 40.2 28 0.00061 36.3 3.3 45 42-87 126-170 (1149)
279 cd07041 STAS_RsbR_RsbS_like Su 40.1 62 0.0013 23.8 4.5 28 27-54 43-78 (109)
280 COG0541 Ffh Signal recognition 40.1 1.4E+02 0.0031 28.9 7.8 69 41-110 120-190 (451)
281 cd03814 GT1_like_2 This family 40.1 49 0.0011 28.2 4.4 61 12-85 259-319 (364)
282 TIGR00112 proC pyrroline-5-car 40.1 2E+02 0.0043 24.8 8.3 75 5-88 29-106 (245)
283 cd03801 GT1_YqgM_like This fam 39.9 43 0.00094 27.9 4.0 45 11-61 267-311 (374)
284 PRK00164 moaA molybdenum cofac 39.9 49 0.0011 29.7 4.6 13 175-187 258-270 (331)
285 PLN02417 dihydrodipicolinate s 39.9 71 0.0015 28.3 5.6 47 34-80 20-75 (280)
286 cd06309 PBP1_YtfQ_like Peripla 39.8 1.6E+02 0.0034 24.7 7.5 33 25-57 55-88 (273)
287 cd00757 ThiF_MoeB_HesA_family 39.7 88 0.0019 26.7 6.0 42 12-59 104-147 (228)
288 cd01141 TroA_d Periplasmic bin 39.5 1.2E+02 0.0025 24.4 6.4 16 41-56 61-76 (186)
289 cd00532 MGS-like MGS-like doma 39.5 47 0.001 25.2 3.8 44 41-84 59-108 (112)
290 TIGR02354 thiF_fam2 thiamine b 39.2 65 0.0014 27.2 5.0 9 25-33 110-118 (200)
291 cd00946 FBP_aldolase_IIA Class 39.1 93 0.002 29.0 6.3 56 25-80 15-92 (345)
292 PRK06552 keto-hydroxyglutarate 39.0 1.1E+02 0.0023 26.4 6.3 32 25-59 88-119 (213)
293 KOG0068 D-3-phosphoglycerate d 39.0 1.1E+02 0.0023 29.0 6.6 82 11-101 36-125 (406)
294 cd01492 Aos1_SUMO Ubiquitin ac 39.0 68 0.0015 26.9 5.1 59 24-85 87-145 (197)
295 cd01866 Rab2 Rab2 subfamily. 39.0 1.8E+02 0.0038 22.7 7.3 52 28-79 82-144 (168)
296 cd00079 HELICc Helicase superf 38.5 1.4E+02 0.003 21.7 6.3 64 27-90 30-94 (131)
297 PRK00945 acetyl-CoA decarbonyl 38.5 59 0.0013 27.3 4.5 47 34-83 23-71 (171)
298 TIGR00381 cdhD CO dehydrogenas 38.3 1.4E+02 0.0031 28.3 7.4 71 25-101 188-264 (389)
299 TIGR02742 TrbC_Ftype type-F co 38.3 1.4E+02 0.0031 23.8 6.5 53 28-82 3-61 (130)
300 PRK13396 3-deoxy-7-phosphohept 38.3 1.5E+02 0.0033 27.6 7.7 70 38-110 154-244 (352)
301 PF13458 Peripla_BP_6: Peripla 38.2 94 0.002 26.9 6.0 45 35-81 54-99 (343)
302 PTZ00142 6-phosphogluconate de 38.1 1.4E+02 0.0031 28.8 7.6 67 7-77 51-121 (470)
303 cd06337 PBP1_ABC_ligand_bindin 37.9 73 0.0016 28.5 5.4 47 33-81 52-99 (357)
304 TIGR00315 cdhB CO dehydrogenas 37.9 54 0.0012 27.2 4.2 47 34-83 16-63 (162)
305 cd06331 PBP1_AmiC_like Type I 37.8 92 0.002 27.3 6.0 45 34-80 51-96 (333)
306 TIGR01361 DAHP_synth_Bsub phos 37.8 1.9E+02 0.004 25.6 7.8 72 36-110 76-168 (260)
307 COG4109 Predicted transcriptio 37.7 54 0.0012 31.1 4.5 89 40-133 125-220 (432)
308 PF07905 PucR: Purine cataboli 37.7 83 0.0018 24.3 5.0 49 35-83 58-107 (123)
309 cd03819 GT1_WavL_like This fam 37.6 59 0.0013 28.0 4.6 46 10-61 254-300 (355)
310 PF11303 DUF3105: Protein of u 37.6 68 0.0015 25.7 4.6 51 37-87 38-88 (130)
311 cd01144 BtuF Cobalamin binding 37.5 1.4E+02 0.0029 25.0 6.8 40 10-55 47-86 (245)
312 cd06355 PBP1_FmdD_like Peripla 37.4 1.1E+02 0.0024 27.2 6.5 43 24-67 187-233 (348)
313 TIGR03569 NeuB_NnaB N-acetylne 37.4 80 0.0017 29.1 5.6 39 39-77 123-161 (329)
314 cd00952 CHBPH_aldolase Trans-o 37.4 2.8E+02 0.006 24.9 9.1 23 36-58 29-53 (309)
315 COG0565 LasT rRNA methylase [T 37.3 1.3E+02 0.0028 26.7 6.7 86 6-97 59-158 (242)
316 PF01118 Semialdhyde_dh: Semia 37.2 59 0.0013 24.7 4.1 35 25-59 66-100 (121)
317 TIGR02634 xylF D-xylose ABC tr 37.1 2.3E+02 0.0051 24.5 8.4 32 24-55 53-85 (302)
318 PF04055 Radical_SAM: Radical 36.9 85 0.0018 23.6 5.0 33 35-67 126-162 (166)
319 COG0800 Eda 2-keto-3-deoxy-6-p 36.9 1E+02 0.0022 26.8 5.8 57 25-86 38-96 (211)
320 PLN02704 flavonol synthase 36.9 74 0.0016 29.0 5.3 43 29-72 45-90 (335)
321 PHA02530 pseT polynucleotide k 36.8 1.1E+02 0.0023 26.7 6.2 39 39-77 65-103 (300)
322 TIGR03586 PseI pseudaminic aci 36.7 1.4E+02 0.0031 27.4 7.2 33 39-71 124-156 (327)
323 PF13460 NAD_binding_10: NADH( 36.7 1.5E+02 0.0033 23.3 6.6 36 25-60 60-102 (183)
324 cd06327 PBP1_SBP_like_1 Peripl 36.5 1.1E+02 0.0024 26.7 6.3 29 26-54 67-95 (334)
325 cd06376 PBP1_mGluR_groupIII Li 36.4 57 0.0012 30.6 4.6 38 24-61 230-270 (463)
326 PLN03002 oxidoreductase, 2OG-F 36.4 72 0.0016 29.1 5.2 42 29-71 17-61 (332)
327 PRK15059 tartronate semialdehy 36.4 1.7E+02 0.0038 26.0 7.5 70 6-82 42-118 (292)
328 cd06348 PBP1_ABC_ligand_bindin 36.2 3E+02 0.0064 24.1 11.3 84 24-109 66-170 (344)
329 PF10686 DUF2493: Protein of u 36.2 1.6E+02 0.0034 20.9 5.8 54 31-84 13-67 (71)
330 TIGR03677 rpl7ae 50S ribosomal 36.1 1.1E+02 0.0024 23.7 5.5 15 39-53 59-73 (117)
331 cd06292 PBP1_LacI_like_10 Liga 35.9 2.3E+02 0.005 23.5 7.9 31 25-55 55-89 (273)
332 PRK07709 fructose-bisphosphate 35.9 1.4E+02 0.003 27.0 6.8 68 12-80 5-82 (285)
333 PF00072 Response_reg: Respons 35.9 95 0.0021 22.0 4.9 55 7-62 26-84 (112)
334 PTZ00431 pyrroline carboxylate 35.8 2E+02 0.0044 24.9 7.8 68 9-85 47-116 (260)
335 COG0614 FepB ABC-type Fe3+-hyd 35.7 1.2E+02 0.0026 26.2 6.3 40 12-58 107-146 (319)
336 TIGR00173 menD 2-succinyl-5-en 35.7 1E+02 0.0022 28.9 6.2 46 36-81 199-244 (432)
337 cd06350 PBP1_GPCR_family_C_lik 35.5 77 0.0017 27.7 5.1 38 25-62 217-256 (348)
338 PLN02639 oxidoreductase, 2OG-F 34.9 83 0.0018 28.7 5.3 42 29-71 40-84 (337)
339 COG3367 Uncharacterized conser 34.9 61 0.0013 30.2 4.4 68 3-76 50-123 (339)
340 cd03808 GT1_cap1E_like This fa 34.9 71 0.0015 26.7 4.6 43 11-59 255-297 (359)
341 cd01493 APPBP1_RUB Ubiquitin a 34.7 89 0.0019 29.8 5.6 36 49-85 112-147 (425)
342 PRK13361 molybdenum cofactor b 34.7 76 0.0016 28.7 5.0 41 10-51 75-116 (329)
343 cd08291 ETR_like_1 2-enoyl thi 34.7 1.3E+02 0.0028 26.2 6.4 33 25-57 212-244 (324)
344 TIGR00519 asnASE_I L-asparagin 34.6 1.1E+02 0.0024 28.1 6.1 63 26-89 212-278 (336)
345 cd01491 Ube1_repeat1 Ubiquitin 34.5 77 0.0017 28.6 4.9 61 25-91 86-146 (286)
346 PF05368 NmrA: NmrA-like famil 34.4 69 0.0015 26.6 4.4 14 42-55 37-50 (233)
347 COG1587 HemD Uroporphyrinogen- 34.1 1.1E+02 0.0023 26.5 5.6 64 24-94 174-241 (248)
348 PRK05583 ribosomal protein L7A 33.7 1.1E+02 0.0024 23.3 5.1 30 49-78 33-62 (104)
349 PRK13399 fructose-1,6-bisphosp 33.6 1.3E+02 0.0029 28.0 6.4 68 12-80 5-80 (347)
350 PRK09997 hydroxypyruvate isome 33.5 1.4E+02 0.003 25.6 6.3 46 37-82 86-144 (258)
351 PF06506 PrpR_N: Propionate ca 33.4 87 0.0019 25.6 4.8 50 26-83 101-151 (176)
352 cd06362 PBP1_mGluR Ligand bind 33.4 62 0.0013 30.0 4.3 38 25-62 230-270 (452)
353 cd06322 PBP1_ABC_sugar_binding 33.3 2.8E+02 0.006 22.9 8.5 32 24-55 54-86 (267)
354 PRK04175 rpl7ae 50S ribosomal 33.3 1.3E+02 0.0029 23.5 5.6 17 38-55 18-34 (122)
355 cd06324 PBP1_ABC_sugar_binding 33.1 2.6E+02 0.0056 24.1 8.0 33 25-57 58-90 (305)
356 PRK07283 hypothetical protein; 32.9 1.5E+02 0.0032 22.2 5.5 6 47-52 58-63 (98)
357 PRK10595 SOS cell division inh 32.8 2.5E+02 0.0053 23.5 7.3 52 28-79 84-138 (164)
358 smart00490 HELICc helicase sup 32.8 1.2E+02 0.0027 19.9 4.8 37 47-83 9-45 (82)
359 cd07581 nitrilase_3 Uncharacte 32.8 1.2E+02 0.0025 25.7 5.6 16 65-80 64-79 (255)
360 cd03820 GT1_amsD_like This fam 32.8 83 0.0018 26.1 4.6 45 11-61 244-288 (348)
361 PRK08674 bifunctional phosphog 32.6 2.6E+02 0.0056 25.3 8.1 60 25-90 78-145 (337)
362 PRK00912 ribonuclease P protei 32.4 76 0.0016 27.2 4.4 54 39-92 121-193 (237)
363 COG1023 Gnd Predicted 6-phosph 32.4 58 0.0013 29.5 3.7 44 10-59 77-123 (300)
364 COG1493 HprK Serine kinase of 32.1 97 0.0021 28.5 5.2 48 36-85 68-115 (308)
365 TIGR02417 fruct_sucro_rep D-fr 32.1 2.4E+02 0.0052 24.4 7.7 30 25-54 116-145 (327)
366 cd00959 DeoC 2-deoxyribose-5-p 32.1 1.4E+02 0.003 25.0 5.9 57 28-85 121-184 (203)
367 PF00809 Pterin_bind: Pterin b 32.1 58 0.0012 27.6 3.6 41 13-58 85-125 (210)
368 PRK12457 2-dehydro-3-deoxyphos 32.0 3.6E+02 0.0079 24.5 8.7 90 32-125 140-255 (281)
369 smart00481 POLIIIAc DNA polyme 31.9 1.6E+02 0.0035 19.7 5.4 42 38-80 17-59 (67)
370 TIGR00646 MG010 DNA primase-re 31.9 3.5E+02 0.0076 23.6 9.9 89 35-128 116-215 (218)
371 PF03599 CdhD: CO dehydrogenas 31.9 90 0.0019 29.6 5.1 88 33-133 80-169 (386)
372 COG0832 UreB Urea amidohydrola 31.7 7.6 0.00016 30.1 -1.7 12 114-125 60-71 (106)
373 PRK03369 murD UDP-N-acetylmura 31.6 2E+02 0.0044 27.4 7.6 38 53-92 119-158 (488)
374 KOG1673 Ras GTPases [General f 31.6 2.6E+02 0.0057 23.8 7.2 72 29-102 99-186 (205)
375 PRK08327 acetolactate synthase 31.6 1E+02 0.0022 30.0 5.7 50 34-83 206-256 (569)
376 cd06268 PBP1_ABC_transporter_L 31.6 1.1E+02 0.0023 25.3 5.1 44 35-80 52-95 (298)
377 COG1042 Acyl-CoA synthetase (N 31.6 1.1E+02 0.0024 30.7 5.8 79 5-90 52-137 (598)
378 PRK13203 ureB urease subunit b 31.4 8.5 0.00018 29.8 -1.5 12 113-124 59-70 (102)
379 PRK13798 putative OHCU decarbo 31.4 53 0.0012 27.3 3.2 26 38-63 102-127 (166)
380 PF09673 TrbC_Ftype: Type-F co 31.3 2.1E+02 0.0046 21.9 6.4 48 28-75 2-52 (113)
381 cd01018 ZntC Metal binding pro 31.3 1.5E+02 0.0032 25.8 6.2 41 45-86 184-229 (266)
382 PF04392 ABC_sub_bind: ABC tra 31.3 1.7E+02 0.0037 25.6 6.6 85 23-109 57-167 (294)
383 PRK07092 benzoylformate decarb 31.1 84 0.0018 30.2 4.9 49 35-83 193-242 (530)
384 TIGR01488 HAD-SF-IB Haloacid D 31.1 66 0.0014 25.3 3.6 24 37-60 77-100 (177)
385 TIGR03088 stp2 sugar transfera 31.1 74 0.0016 28.2 4.3 60 11-83 264-323 (374)
386 PF11813 DUF3334: Protein of u 31.0 57 0.0012 28.6 3.3 24 28-51 64-87 (229)
387 TIGR00192 urease_beta urease, 31.0 8.7 0.00019 29.7 -1.5 12 113-124 59-70 (101)
388 COG3897 Predicted methyltransf 30.9 71 0.0015 27.9 3.9 51 27-78 150-200 (218)
389 PF07071 DUF1341: Protein of u 30.8 81 0.0017 27.5 4.2 48 33-81 161-208 (218)
390 TIGR03164 UHCUDC OHCU decarbox 30.7 57 0.0012 26.8 3.2 27 37-63 96-122 (157)
391 cd02810 DHOD_DHPD_FMN Dihydroo 30.7 2.4E+02 0.0053 24.5 7.4 20 34-53 109-128 (289)
392 PRK12360 4-hydroxy-3-methylbut 30.6 1.5E+02 0.0033 26.8 6.1 80 29-110 94-191 (281)
393 TIGR03451 mycoS_dep_FDH mycoth 30.6 92 0.002 27.9 4.8 31 26-56 246-277 (358)
394 TIGR02356 adenyl_thiF thiazole 30.5 1.3E+02 0.0027 25.3 5.4 36 25-60 111-148 (202)
395 cd06323 PBP1_ribose_binding Pe 30.3 3.1E+02 0.0066 22.5 8.5 31 25-55 55-86 (268)
396 cd00755 YgdL_like Family of ac 30.3 1.2E+02 0.0025 26.5 5.2 90 25-132 78-169 (231)
397 PRK10014 DNA-binding transcrip 30.3 2.7E+02 0.0059 24.2 7.7 30 25-54 120-149 (342)
398 cd06359 PBP1_Nba_like Type I p 30.2 1.2E+02 0.0026 26.6 5.4 34 25-58 65-98 (333)
399 PRK12480 D-lactate dehydrogena 30.0 2.6E+02 0.0056 25.5 7.7 58 24-85 44-102 (330)
400 cd06295 PBP1_CelR Ligand bindi 29.9 2.5E+02 0.0055 23.4 7.2 29 25-54 64-92 (275)
401 PRK15461 NADH-dependent gamma- 29.9 1.9E+02 0.0042 25.6 6.7 73 6-85 44-123 (296)
402 cd06283 PBP1_RegR_EndR_KdgR_li 29.9 2.3E+02 0.0049 23.3 6.8 29 25-55 55-84 (267)
403 cd06314 PBP1_tmGBP Periplasmic 29.7 3.3E+02 0.0072 22.7 8.2 30 25-55 55-85 (271)
404 TIGR02082 metH 5-methyltetrahy 29.7 99 0.0022 33.5 5.5 54 28-83 418-472 (1178)
405 cd07020 Clp_protease_NfeD_1 No 29.7 2.2E+02 0.0047 23.5 6.6 64 29-92 9-79 (187)
406 COG1358 RPL8A Ribosomal protei 29.7 1.9E+02 0.0041 22.7 5.9 47 39-85 33-80 (116)
407 PRK07084 fructose-bisphosphate 29.4 2.2E+02 0.0047 26.3 7.0 68 12-80 11-90 (321)
408 PF00582 Usp: Universal stress 29.4 1.9E+02 0.0041 20.6 5.7 57 26-82 79-140 (140)
409 cd07576 R-amidase_like Pseudom 29.3 1.6E+02 0.0034 24.8 5.8 17 64-80 64-80 (254)
410 cd06358 PBP1_NHase Type I peri 29.3 1.8E+02 0.0039 25.5 6.4 42 24-65 186-229 (333)
411 PRK08199 thiamine pyrophosphat 29.3 1.2E+02 0.0026 29.4 5.7 49 35-83 191-240 (557)
412 TIGR00259 thylakoid_BtpA membr 29.3 1.4E+02 0.003 26.7 5.6 60 26-87 144-212 (257)
413 TIGR02313 HpaI-NOT-DapA 2,4-di 29.2 3.8E+02 0.0082 23.8 8.5 40 45-84 65-105 (294)
414 cd06330 PBP1_Arsenic_SBP_like 29.2 1.2E+02 0.0026 26.6 5.2 33 25-57 67-99 (346)
415 PRK13936 phosphoheptose isomer 29.2 3E+02 0.0066 22.9 7.5 58 25-87 111-171 (197)
416 cd00407 Urease_beta Urease bet 29.1 9.4 0.0002 29.5 -1.6 11 114-124 60-70 (101)
417 cd01422 MGS Methylglyoxal synt 29.1 1.1E+02 0.0023 23.6 4.3 46 39-84 60-110 (115)
418 cd06273 PBP1_GntR_like_1 This 29.1 2.6E+02 0.0056 23.1 7.1 29 25-54 55-83 (268)
419 cd04509 PBP1_ABC_transporter_G 29.1 1.5E+02 0.0032 24.5 5.5 36 25-60 191-229 (299)
420 cd06330 PBP1_Arsenic_SBP_like 29.0 3.9E+02 0.0085 23.3 12.0 47 33-81 50-97 (346)
421 PLN02880 tyrosine decarboxylas 29.0 2.5E+02 0.0054 27.1 7.7 60 34-93 222-287 (490)
422 cd03798 GT1_wlbH_like This fam 29.0 59 0.0013 27.3 3.1 37 25-61 278-314 (377)
423 PF00532 Peripla_BP_1: Peripla 28.8 2.1E+02 0.0046 24.9 6.7 66 13-96 49-115 (279)
424 cd01491 Ube1_repeat1 Ubiquitin 28.8 74 0.0016 28.7 3.8 36 25-60 105-142 (286)
425 TIGR02717 AcCoA-syn-alpha acet 28.7 1.5E+02 0.0033 28.2 6.1 41 42-84 394-435 (447)
426 PRK15181 Vi polysaccharide bio 28.7 69 0.0015 28.7 3.7 82 116-215 162-263 (348)
427 PF08013 Tagatose_6_P_K: Tagat 28.7 51 0.0011 31.6 2.8 50 29-78 21-82 (424)
428 PRK01130 N-acetylmannosamine-6 28.7 1.9E+02 0.0042 24.2 6.3 42 39-80 78-124 (221)
429 cd05014 SIS_Kpsf KpsF-like pro 28.7 1.8E+02 0.0039 21.7 5.5 36 25-60 47-85 (128)
430 cd06348 PBP1_ABC_ligand_bindin 28.6 1.2E+02 0.0025 26.7 5.0 47 33-81 50-97 (344)
431 PRK11096 ansB L-asparaginase I 28.6 1.4E+02 0.003 27.8 5.6 62 26-88 233-298 (347)
432 cd04509 PBP1_ABC_transporter_G 28.6 2E+02 0.0042 23.7 6.2 44 35-80 52-96 (299)
433 COG0645 Predicted kinase [Gene 28.6 1.8E+02 0.0038 24.5 5.8 62 36-97 63-124 (170)
434 TIGR01182 eda Entner-Doudoroff 28.5 1.7E+02 0.0038 25.0 5.9 59 25-88 33-93 (204)
435 PRK15452 putative protease; Pr 28.5 2E+02 0.0044 27.6 6.9 57 32-88 6-72 (443)
436 TIGR02666 moaA molybdenum cofa 28.4 1.3E+02 0.0028 27.0 5.4 11 175-185 257-267 (334)
437 PRK06130 3-hydroxybutyryl-CoA 28.4 1.2E+02 0.0026 26.8 5.1 49 8-62 68-121 (311)
438 cd01484 E1-2_like Ubiquitin ac 28.3 1.5E+02 0.0032 25.9 5.5 36 25-60 91-128 (234)
439 TIGR03278 methan_mark_10 putat 28.1 1.5E+02 0.0032 28.1 5.9 47 32-81 85-135 (404)
440 PRK12491 pyrroline-5-carboxyla 28.1 3.6E+02 0.0078 23.7 8.1 74 5-87 49-125 (272)
441 PF06792 UPF0261: Uncharacteri 28.1 1.3E+02 0.0028 28.8 5.4 52 12-82 226-277 (403)
442 PRK03892 ribonuclease P protei 28.1 65 0.0014 28.2 3.2 14 40-53 93-106 (216)
443 TIGR03326 rubisco_III ribulose 28.0 1.9E+02 0.0042 27.6 6.6 99 28-131 215-328 (412)
444 TIGR03713 acc_sec_asp1 accesso 27.9 58 0.0013 31.7 3.2 35 12-53 421-455 (519)
445 PF00389 2-Hacid_dh: D-isomer 27.8 2.1E+02 0.0045 21.9 5.8 56 25-86 38-94 (133)
446 TIGR03811 tyr_de_CO2_Ent tyros 27.8 1.1E+02 0.0024 30.7 5.1 45 33-77 260-313 (608)
447 cd00381 IMPDH IMPDH: The catal 27.8 1.9E+02 0.0041 26.4 6.4 33 25-57 106-143 (325)
448 PRK12557 H(2)-dependent methyl 27.8 1.9E+02 0.0042 26.6 6.5 59 5-70 67-130 (342)
449 PRK06702 O-acetylhomoserine am 27.5 98 0.0021 29.5 4.6 57 25-85 125-187 (432)
450 TIGR03180 UraD_2 OHCU decarbox 27.5 69 0.0015 26.3 3.2 28 36-63 95-122 (158)
451 TIGR00343 pyridoxal 5'-phospha 27.4 85 0.0018 28.6 3.9 63 64-131 186-250 (287)
452 cd00255 nidG2 Nidogen, G2 doma 27.4 91 0.002 27.4 4.0 34 161-194 80-113 (224)
453 cd01017 AdcA Metal binding pro 27.3 1.7E+02 0.0036 25.7 5.8 61 44-111 184-250 (282)
454 cd04165 GTPBP1_like GTPBP1-lik 27.2 2.8E+02 0.0061 23.6 7.0 37 25-61 109-150 (224)
455 cd06364 PBP1_CaSR Ligand-bindi 27.1 1E+02 0.0023 29.6 4.8 38 24-61 243-282 (510)
456 TIGR00118 acolac_lg acetolacta 27.1 1.3E+02 0.0028 29.1 5.5 48 35-82 188-236 (558)
457 PRK10936 TMAO reductase system 27.0 4.4E+02 0.0095 23.4 8.6 29 25-54 104-133 (343)
458 cd06296 PBP1_CatR_like Ligand- 27.0 2.6E+02 0.0056 23.1 6.7 17 189-205 231-247 (270)
459 cd01147 HemV-2 Metal binding p 27.0 2E+02 0.0043 24.1 6.1 42 10-57 64-106 (262)
460 cd01483 E1_enzyme_family Super 27.0 1.7E+02 0.0037 22.6 5.3 37 48-85 88-124 (143)
461 cd01540 PBP1_arabinose_binding 27.0 3.8E+02 0.0082 22.5 8.2 31 25-55 54-85 (289)
462 cd00424 PolY Y-family of DNA p 26.9 1.2E+02 0.0025 27.5 4.8 54 78-131 66-128 (343)
463 PRK12475 thiamine/molybdopteri 26.9 1.2E+02 0.0026 27.9 4.9 59 25-85 93-151 (338)
464 cd06342 PBP1_ABC_LIVBP_like Ty 26.8 4.1E+02 0.0089 22.8 8.2 42 24-65 189-231 (334)
465 PRK08293 3-hydroxybutyryl-CoA 26.7 1.5E+02 0.0033 26.0 5.4 51 7-63 72-127 (287)
466 PRK13202 ureB urease subunit b 26.7 12 0.00025 29.2 -1.5 12 113-124 60-71 (104)
467 PF01116 F_bP_aldolase: Fructo 26.7 52 0.0011 29.7 2.5 19 49-67 205-224 (287)
468 cd03799 GT1_amsK_like This is 26.7 2.6E+02 0.0057 23.8 6.9 58 12-82 248-311 (355)
469 cd03822 GT1_ecORF704_like This 26.6 66 0.0014 27.4 3.1 42 12-59 260-303 (366)
470 PRK09490 metH B12-dependent me 26.6 1.2E+02 0.0026 33.0 5.5 54 28-83 434-488 (1229)
471 PF02737 3HCDH_N: 3-hydroxyacy 26.5 48 0.001 27.4 2.1 49 7-62 67-120 (180)
472 PF00282 Pyridoxal_deC: Pyrido 26.5 99 0.0022 28.6 4.4 48 35-82 178-231 (373)
473 cd04106 Rab23_lke Rab23-like s 26.4 2.9E+02 0.0062 20.9 6.9 55 28-82 80-144 (162)
474 PRK13396 3-deoxy-7-phosphohept 26.3 4.2E+02 0.0091 24.8 8.4 80 34-113 220-310 (352)
475 smart00870 Asparaginase Aspara 26.3 1.7E+02 0.0036 26.6 5.7 63 26-89 212-278 (323)
476 PRK12595 bifunctional 3-deoxy- 26.3 2.9E+02 0.0064 25.7 7.4 60 34-93 130-200 (360)
477 PF15151 RGCC: Response gene t 26.2 17 0.00037 28.7 -0.7 46 11-62 19-70 (121)
478 PRK12436 UDP-N-acetylenolpyruv 26.2 94 0.002 28.1 4.1 30 25-54 36-65 (305)
479 cd06278 PBP1_LacI_like_2 Ligan 26.2 3.6E+02 0.0079 22.0 7.9 29 25-55 54-83 (266)
480 COG1260 INO1 Myo-inositol-1-ph 26.2 1.2E+02 0.0026 28.5 4.8 67 24-93 131-203 (362)
481 cd06371 PBP1_sensory_GC_DEF_li 25.9 1E+02 0.0023 28.0 4.4 48 12-59 175-231 (382)
482 PF13277 YmdB: YmdB-like prote 25.9 62 0.0013 29.0 2.7 44 12-57 127-172 (253)
483 cd04145 M_R_Ras_like M-Ras/R-R 25.8 3E+02 0.0064 20.8 7.7 63 28-90 79-154 (164)
484 COG2089 SpsE Sialic acid synth 25.8 1.5E+02 0.0033 27.6 5.3 47 39-85 137-185 (347)
485 COG3010 NanE Putative N-acetyl 25.8 1.2E+02 0.0027 26.6 4.4 19 42-61 140-160 (229)
486 cd06346 PBP1_ABC_ligand_bindin 25.8 1.4E+02 0.003 25.9 5.0 47 13-64 185-232 (312)
487 COG0370 FeoB Fe2+ transport sy 25.7 1.6E+02 0.0035 29.9 5.8 67 24-90 80-154 (653)
488 cd05710 SIS_1 A subgroup of th 25.7 1.6E+02 0.0034 22.3 4.7 37 25-62 47-86 (120)
489 TIGR00520 asnASE_II L-asparagi 25.6 1.6E+02 0.0035 27.3 5.6 63 26-89 239-305 (349)
490 PRK08322 acetolactate synthase 25.6 1.4E+02 0.0031 28.6 5.5 48 35-82 183-231 (547)
491 TIGR00050 rRNA_methyl_1 RNA me 25.6 1.1E+02 0.0025 26.5 4.3 77 8-93 60-151 (233)
492 cd06831 PLPDE_III_ODC_like_AZI 25.5 3.5E+02 0.0075 25.2 7.9 81 25-111 79-170 (394)
493 PF09664 DUF2399: Protein of u 25.4 1.9E+02 0.0041 23.6 5.3 68 29-98 21-90 (152)
494 cd07583 nitrilase_5 Uncharacte 25.4 2E+02 0.0044 24.2 5.8 43 39-81 22-80 (253)
495 TIGR01544 HAD-SF-IE haloacid d 25.4 1.1E+02 0.0023 27.6 4.2 27 35-61 123-149 (277)
496 PLN03108 Rab family protein; P 25.3 3.9E+02 0.0084 22.0 7.7 93 28-120 84-190 (210)
497 cd08276 MDR7 Medium chain dehy 25.3 3.6E+02 0.0077 23.0 7.5 36 24-59 228-263 (336)
498 COG0028 IlvB Thiamine pyrophos 25.2 1.5E+02 0.0032 29.2 5.5 48 36-83 188-236 (550)
499 PRK07688 thiamine/molybdopteri 25.2 1.4E+02 0.0031 27.3 5.1 58 25-84 93-150 (339)
500 PRK06552 keto-hydroxyglutarate 25.0 1.4E+02 0.0031 25.6 4.8 59 28-90 42-103 (213)
No 1
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.6e-73 Score=494.34 Aligned_cols=202 Identities=29% Similarity=0.399 Sum_probs=186.8
Q ss_pred CCCccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 3 QPLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 3 ~~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+++|+++++++..... .+||+||||+|+++.+++++|+++++++|||||||+++|++.|+++++ ++|+|+||
T Consensus 53 ~~~gv~v~~~~~~~~~------~~DV~IDFT~P~~~~~~l~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~--~v~vv~a~ 124 (266)
T COG0289 53 GLLGVPVTDDLLLVKA------DADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLEKLREAAE--KVPVVIAP 124 (266)
T ss_pred cccCceeecchhhccc------CCCEEEECCCchhhHHHHHHHHHcCCCeEEECCCCCHHHHHHHHHHHh--hCCEEEec
Confidence 5688999999766654 799999999999999999999999999999999999999999999994 49999999
Q ss_pred ChhHHHHHHHHHHHHHhhhc--CCeEEEecCCC-CCCCCcHHHHHHHHHHHhcCc-------ccCCCccccccccccccC
Q 027747 83 TLSIGSILLQQAAISASFHY--KNVEIVESRPN-ARDFPSPDATQIANNLSNLGQ-------IYNREDISTDVKARGQVL 152 (219)
Q Consensus 83 NfSlGv~ll~~~~~~aa~~~--~dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~~-------~~~~~~~~~~~~~r~~~~ 152 (219)
|||+|+|||+++++.|+++| ||+||+|+||| |+|||||||++|++.|++.+. +|+|++.+ |+|
T Consensus 125 NfSiGvnll~~l~~~aak~l~~~DiEIiE~HHr~K~DAPSGTAl~lae~ia~~~~~~~~~~~v~~r~G~~---g~r---- 197 (266)
T COG0289 125 NFSLGVNLLFKLAEQAAKVLDDYDIEIIEAHHRHKKDAPSGTALKLAEAIAEARGQDLKDEAVYGREGAT---GAR---- 197 (266)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCEEehhhhcccCCCCCcHHHHHHHHHHHHhhccccccceeecccCCc---CCC----
Confidence 99999999999999999999 59999999997 999999999999999999653 35566543 455
Q ss_pred CCCceeEEEEEcCCCceEEEEEEccCCcEEEEEEeecCccccHHHHHHHHHHhhcCCCeeeeccccC
Q 027747 153 GEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 219 (219)
Q Consensus 153 ~~~~i~ihS~R~g~ivg~H~V~f~~~~E~i~i~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL 219 (219)
.+++|+|||+|+|+++|+|+|+|.++||+|+|+|+|.||.+||+||++||+|+.++++|+|+|+|||
T Consensus 198 ~~~~Igi~svR~G~ivG~H~V~F~~~GE~iei~H~A~sR~~Fa~Gal~aa~wi~~k~~g~Y~m~dvL 264 (266)
T COG0289 198 KEGEIGIHSVRGGDIVGEHEVIFAGEGERIEIRHRATSRDSFARGALLAARWLVGKPPGLYDMEDVL 264 (266)
T ss_pred CCCCceeEEeecCCcceeEEEEEecCCcEEEEEEeeccHHHHHHHHHHHHHHHhCCCCCccchHHhh
Confidence 4579999999999999999999999999999999999999999999999999999989999999997
No 2
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=100.00 E-value=3.3e-66 Score=456.49 Aligned_cols=202 Identities=28% Similarity=0.394 Sum_probs=186.0
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.|+++++|++++ . ..+|||||||.|++..++++.|+++|+|+|+|||||++++.+.|.++|+++++|++++|||
T Consensus 54 ~gv~~~~d~~~l-~-----~~~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 54 VGVPVTDDLEAV-E-----TDPDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred CCceeeCCHHHh-c-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 578889999998 3 2699999999999999999999999999999999999999999999998888999999999
Q ss_pred hHHHHHHHHHHHHHhhhc--CCeEEEecCCC-CCCCCcHHHHHHHHHHHhcCc-------ccCCCccccccccccccCCC
Q 027747 85 SIGSILLQQAAISASFHY--KNVEIVESRPN-ARDFPSPDATQIANNLSNLGQ-------IYNREDISTDVKARGQVLGE 154 (219)
Q Consensus 85 SlGv~ll~~~~~~aa~~~--~dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~~-------~~~~~~~~~~~~~r~~~~~~ 154 (219)
|+|+|+|+++++.++++| ||+||+|+||+ |+|+|||||++|++.|++.+. .++|++. .++| ++
T Consensus 128 SlGv~ll~~~~~~aa~~l~~~dieI~E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~---~~~r----~~ 200 (266)
T TIGR00036 128 SIGVNLMFKLLEKAAKYLGDYDIEIIELHHRHKKDAPSGTALKTAEMIAEARGERLKNVAVTEREGL---TGER----GR 200 (266)
T ss_pred cHHHHHHHHHHHHHHHhccCCCEEeeeeccCCCCCCCCHHHHHHHHHHHHhhccccccCccccccCC---cCCC----CC
Confidence 999999999999999998 68899999997 999999999999999998653 3444443 2456 34
Q ss_pred CceeEEEEEcCCCceEEEEEEccCCcEEEEEEeecCccccHHHHHHHHHHhhcCCCeeeeccccC
Q 027747 155 DGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 219 (219)
Q Consensus 155 ~~i~ihS~R~g~ivg~H~V~f~~~~E~i~i~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL 219 (219)
++|+|||+|+|+++|+|+|+|++++|+|+|+|++.||++||+|||+||+||.++++|+|+|+|||
T Consensus 201 ~~i~i~s~R~g~i~g~h~v~f~~~~e~i~i~H~a~~R~~fa~Gal~Aa~~l~~~~~g~y~m~dvl 265 (266)
T TIGR00036 201 EEIGIHAVRGGDVVGEHTVMFAGDGERLEITHRASSRACFANGAVRAARWLADKEAGVYDMEDVL 265 (266)
T ss_pred CccceEEEecCCceEEEEEEEcCCCeEEEEEEEECcHHHhHHHHHHHHHHHcCCCCcEEeHHHhc
Confidence 78999999999999999999999999999999999999999999999999999999999999997
No 3
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=100.00 E-value=5.9e-63 Score=433.42 Aligned_cols=206 Identities=28% Similarity=0.369 Sum_probs=181.3
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.++++++|+++++. .+|||||||.|+...++++.|+++|+|+|+|||||++++.++|.+++ +++|++++|||
T Consensus 46 ~~i~~~~dl~~ll~------~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa--~~~~v~~s~n~ 117 (257)
T PRK00048 46 LGVAITDDLEAVLA------DADVLIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA--KKIPVVIAPNF 117 (257)
T ss_pred CCccccCCHHHhcc------CCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh--cCCCEEEECcc
Confidence 46778899999985 69999999999999999999999999999999999999999999966 78999999999
Q ss_pred hHHHHHHHHHHHHHhhhc--CCeEEEecCCC-CCCCCcHHHHHHHHHHHhcCc-ccCCCccccccccccccCCCCceeEE
Q 027747 85 SIGSILLQQAAISASFHY--KNVEIVESRPN-ARDFPSPDATQIANNLSNLGQ-IYNREDISTDVKARGQVLGEDGVRVH 160 (219)
Q Consensus 85 SlGv~ll~~~~~~aa~~~--~dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~~-~~~~~~~~~~~~~r~~~~~~~~i~ih 160 (219)
|+|+++++++++.++++| ||+||+|+||+ |+|+|||||++|++.+++.+. .+++.....-.+.|+.. .+++|+||
T Consensus 118 s~g~~~~~~l~~~aa~~l~~~d~ei~E~HH~~K~DaPSGTA~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~ 196 (257)
T PRK00048 118 SIGVNLLMKLAEKAAKYLGDYDIEIIEAHHRHKVDAPSGTALKLAEAIAEARGRDLKEVAVYGREGATGAR-VKGEIGIH 196 (257)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCEEEEEccCCCCCCCCCHHHHHHHHHHHHhhcccccccceeccCCccCCc-CCCCccEE
Confidence 999999999999999988 59999999997 999999999999999988542 11111111001222221 34689999
Q ss_pred EEEcCCCceEEEEEEccCCcEEEEEEeecCccccHHHHHHHHHHhhcCCCeeeeccccC
Q 027747 161 SMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 219 (219)
Q Consensus 161 S~R~g~ivg~H~V~f~~~~E~i~i~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL 219 (219)
|+|+|+++|+|+|+|++++|+|+|+|++.||++||+|||+||+||.++++|+|+|+|||
T Consensus 197 s~R~g~~~g~h~v~f~~~~e~i~i~H~a~~R~~fa~Gal~aa~~~~~~~~g~y~~~d~l 255 (257)
T PRK00048 197 SVRGGDIVGEHEVIFAGDGERIEIRHDATSRMSFAPGALLAARWLVGKKPGLYGMEDVL 255 (257)
T ss_pred EEEcCCceEEEEEEEecCCcEEEEEEEECcHHhHHHHHHHHHHHHhCCCCcEECHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999986
No 4
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=100.00 E-value=8.9e-62 Score=429.71 Aligned_cols=197 Identities=19% Similarity=0.230 Sum_probs=178.1
Q ss_pred cccc------ccCHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPV------MSDLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v------~~~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
++++ +++|+++++. .+| |+||||+|+++++|+++|+++|+|+|+|||||++++++.|.+. .++|+
T Consensus 48 ~v~v~~~~~~~~~l~~~~~~-----~~d~VvIDFT~P~~~~~n~~~~~~~gv~~ViGTTG~~~~~~~~l~~~---~~i~~ 119 (275)
T TIGR02130 48 EILLHGPSEREARIGEVFAK-----YPELICIDYTHPSAVNDNAAFYGKHGIPFVMGTTGGDREALAKLVAD---AKHPA 119 (275)
T ss_pred ceeeeccccccccHHHHHhh-----cCCEEEEECCChHHHHHHHHHHHHCCCCEEEcCCCCCHHHHHHHHHh---cCCCE
Confidence 6777 8899999862 499 9999999999999999999999999999999999988777554 45999
Q ss_pred EEccChhHHHHHHHHHHHHHhhhcC------CeEEEecCCC-CCCCCcHHHHHHHHHHHhcCcccCCCcccccccccccc
Q 027747 79 LIAPTLSIGSILLQQAAISASFHYK------NVEIVESRPN-ARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQV 151 (219)
Q Consensus 79 v~spNfSlGv~ll~~~~~~aa~~~~------dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~r~~~ 151 (219)
+||||||+|+|||+++++.++++|+ |+||+|+||+ |+|+ ||||++|++.+++.+..|+|+++. +.|
T Consensus 120 l~apNfSiGv~ll~~~~~~aA~~~~~~f~~ydvEIiE~HH~~K~Da-SGTA~~l~~~i~~~~~~~~~~~~~---~~R--- 192 (275)
T TIGR02130 120 VIAPNMAKQIVAFLAAIEFLAEEFPGAFAGYKLEVMESHQASKADA-SGTAKAVIGCFQKLGFDYDMDDIE---KIR--- 192 (275)
T ss_pred EEECcccHHHHHHHHHHHHHHHhhccccCCCCEEEEEcCCCCCCCC-CHHHHHHHHHHHHhCCccCccccc---ccC---
Confidence 9999999999999999999999984 9999999997 9999 999999999999766668887764 355
Q ss_pred CCCC-ceeEEEEEcCCCce---EEEEEEccCCcE--EEEEEeecCccccHHHHHHHHHHhhcC-----CCeeeeccccC
Q 027747 152 LGED-GVRVHSMVLPGLPS---STTVYFSRPGEV--YSIKHDITDVQSLMPGLILAIRKVVHL-----KNLVYGLEKFL 219 (219)
Q Consensus 152 ~~~~-~i~ihS~R~g~ivg---~H~V~f~~~~E~--i~i~H~a~sR~~Fa~Gal~Aa~~l~~~-----~~g~y~m~dvL 219 (219)
+++ +|+|||+|. +++| +|+|+|.+++|+ |+|+|++.||++||.||++||+||.+| ++|+|+|+|||
T Consensus 193 -~~~~~igi~siR~-~~vgGh~~Htv~f~s~~e~i~iel~H~A~sR~~FA~GAl~AA~wL~~k~~~~~~~GlY~m~DvL 269 (275)
T TIGR02130 193 -DEKEQIERMGVPE-EHLGGHAFHLYHLDSADGTVHFEFQHNVCGRKIYAEGTVDAVLFLADKIIAAAEAKIFNMIDVL 269 (275)
T ss_pred -CCCCccceEEecC-cccCCCccEEEEEecCCCeEEEEEEEEECcHHHHHHHHHHHHHHHhcccccCCCCCccCHHHHH
Confidence 334 899999999 7776 999999999999 699999999999999999999999999 88999999986
No 5
>PLN02775 Probable dihydrodipicolinate reductase
Probab=100.00 E-value=4.2e-60 Score=420.77 Aligned_cols=203 Identities=19% Similarity=0.262 Sum_probs=174.4
Q ss_pred ccccc--cCHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 6 EIPVM--SDLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 6 ~~~v~--~~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+++++ +|++++|.+..+ +.|| |+||||+|+++++|+++|+++|+|+|||||||+++|++ ++++++++|+||||
T Consensus 59 ~v~~~~~~dl~~~l~~~~~-~~~~~VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~---~~~~~~~i~vv~ap 134 (286)
T PLN02775 59 EVRLVGPSEREAVLSSVKA-EYPNLIVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGDRDRLL---KDVEESGVYAVIAP 134 (286)
T ss_pred eeeeecCccHHHHHHHhhc-cCCCEEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHH---HHHhcCCccEEEEC
Confidence 67777 999999964211 2589 99999999999999999999999999999999998655 44455789999999
Q ss_pred ChhHHHHHHHHHHHHHhhhc------CCeEEEecCCC-CCCCCcHHHHHHHHHHHhcCcccCCCccccccccccccCCCC
Q 027747 83 TLSIGSILLQQAAISASFHY------KNVEIVESRPN-ARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGED 155 (219)
Q Consensus 83 NfSlGv~ll~~~~~~aa~~~------~dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~r~~~~~~~ 155 (219)
|||+|+|||+++++.++++| ||+||+|+||+ |+|+ ||||++|++.|++.+..|++++... .|....+.+
T Consensus 135 NfSiGv~ll~~l~~~aA~~l~~~f~~yDiEIiE~HH~~K~Da-SGTA~~lae~i~~~g~~~~~~~~~~---~R~~~~~~~ 210 (286)
T PLN02775 135 QMGKQVVAFQAAMEIMAEQFPGAFSGYTLEVVESHQATKLDT-SGTAKAVISSFRKLGVSFDMDQIEL---IRDPKQQLE 210 (286)
T ss_pred cccHHHHHHHHHHHHHHHhcccccCCCCEEEEECCCCCCCCC-cHHHHHHHHHHHHhCCccccccccc---ccCcccccc
Confidence 99999999999999999988 56999999997 9999 9999999999988554455554432 221111335
Q ss_pred ceeEE--EEEcCCCceEEEEEEccCCcE--EEEEEeecCccccHHHHHHHHHHhhcC-----CCeeeeccccC
Q 027747 156 GVRVH--SMVLPGLPSSTTVYFSRPGEV--YSIKHDITDVQSLMPGLILAIRKVVHL-----KNLVYGLEKFL 219 (219)
Q Consensus 156 ~i~ih--S~R~g~ivg~H~V~f~~~~E~--i~i~H~a~sR~~Fa~Gal~Aa~~l~~~-----~~g~y~m~dvL 219 (219)
+++|| ++|+|+ +|+|+|.+++|+ |||+|++.||++||.|||+||+||.+| +||+|+|.|||
T Consensus 211 ~igi~~~~lRgg~---~HtV~f~~~~E~~~iel~H~A~sR~~FA~GAv~AA~wL~~k~~~~~~pGlY~M~DVL 280 (286)
T PLN02775 211 GVGVPEEHLNGHA---FHTYRLTSPDGTVSFEFQHNVCGRSIYAEGTVDAVLFLAKKIAEGADKRIYNMIDVL 280 (286)
T ss_pred ccceeeecccCCC---cEEEEEecCCCeEEEEEEEEeCcHHHHHHHHHHHHHHHhcCcccCCCCCccCHHHHH
Confidence 88995 999999 999999999999 999999999999999999999999998 47999999986
No 6
>PF05173 DapB_C: Dihydrodipicolinate reductase, C-terminus; InterPro: IPR022663 This entry represents the C-terminal region of Dihydrodipicolinate reductase. Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 1YL6_B 1YL5_A 1YL7_C 1P9L_B 1C3V_B ....
Probab=100.00 E-value=8.7e-45 Score=291.00 Aligned_cols=127 Identities=25% Similarity=0.316 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhhhc---CCeEEEecCCC-CCCCCcHHHHHHHHHHHhcCcccCCCccccccccccccCCCCceeEEEE
Q 027747 87 GSILLQQAAISASFHY---KNVEIVESRPN-ARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSM 162 (219)
Q Consensus 87 Gv~ll~~~~~~aa~~~---~dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~i~ihS~ 162 (219)
|+|||+++++.++++| ||+||+|+||+ |+|+|||||++|++.+.+.+.... .......|. ++++|+|||+
T Consensus 1 Gv~ll~~l~~~aa~~l~~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~---~~~~~~~~~---~~~~i~v~s~ 74 (132)
T PF05173_consen 1 GVNLLMKLAKQAAKLLPNGYDIEIIESHHRQKKDAPSGTALMLAESIAEARDRDL---SEVARGGRE---QENEIGVHSV 74 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTSEEEEEEEE-TT-SSSS-HHHHHHHHHHHHHTTSEH---HHHEEECCG---ETTCEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCCEEEEEcccCCCCCCCCHHHHHHHHHHHHhcCccc---ccccccccc---CCccceEEEE
Confidence 8999999999999998 56999999997 999999999999999998653111 000011221 3489999999
Q ss_pred EcCCCceEEEEEEccCCcEEEEEEeecCccccHHHHHHHHHHhhc-CCCeeeeccccC
Q 027747 163 VLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVH-LKNLVYGLEKFL 219 (219)
Q Consensus 163 R~g~ivg~H~V~f~~~~E~i~i~H~a~sR~~Fa~Gal~Aa~~l~~-~~~g~y~m~dvL 219 (219)
|+|+++|+|+|+|++++|+|+|+|+++||++||+||++||+||.+ +++|+|+|+|||
T Consensus 75 R~g~i~G~H~V~f~~~~E~i~l~H~a~sR~~Fa~Gal~Aa~~l~~~~~~G~y~m~dvL 132 (132)
T PF05173_consen 75 RGGGIVGEHEVIFGSPGETIELTHRAHSRSIFAEGALRAARWLAGKKKPGLYSMDDVL 132 (132)
T ss_dssp E-TT--EEEEEEEEETTEEEEEEEEESSTHHHHHHHHHHHHHHTTSSSSEEE-HHHHC
T ss_pred EcCCCCEEEEEEEcCCCcEEEEEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEehHHhC
Confidence 999999999999999999999999999999999999999999999 558999999997
No 7
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=99.86 E-value=4.4e-22 Score=157.12 Aligned_cols=73 Identities=36% Similarity=0.568 Sum_probs=63.0
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+.|++++++++++++ .+||+||||+|+++.+++++|+++|+|+|+|||||+++|++.|++++ +++|++||||
T Consensus 52 ~~~~~v~~~l~~~~~------~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a--~~~~vl~a~N 123 (124)
T PF01113_consen 52 PLGVPVTDDLEELLE------EADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELA--KKIPVLIAPN 123 (124)
T ss_dssp T-SSBEBS-HHHHTT------H-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHT--TTSEEEE-SS
T ss_pred CcccccchhHHHhcc------cCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHh--ccCCEEEeCC
Confidence 678999999999997 49999999999999999999999999999999999999999999999 5599999999
Q ss_pred h
Q 027747 84 L 84 (219)
Q Consensus 84 f 84 (219)
|
T Consensus 124 f 124 (124)
T PF01113_consen 124 F 124 (124)
T ss_dssp S
T ss_pred C
Confidence 8
No 8
>PRK08374 homoserine dehydrogenase; Provisional
Probab=98.51 E-value=1.7e-07 Score=85.78 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=69.2
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHH
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 91 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll 91 (219)
++++++.. .++||+||||.++.+.++.+.|++.|+++|++++|.-....++|.++++++++++++++|++.|+-++
T Consensus 82 ~~~ell~~----~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPii 157 (336)
T PRK08374 82 SPEEIVEE----IDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPII 157 (336)
T ss_pred CHHHHHhc----CCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCch
Confidence 66777742 36999999999999999999999999999999999333455678888889999999999999999888
Q ss_pred HHHHHH
Q 027747 92 QQAAIS 97 (219)
Q Consensus 92 ~~~~~~ 97 (219)
.-+-..
T Consensus 158 ~~l~~~ 163 (336)
T PRK08374 158 GLLREN 163 (336)
T ss_pred HHHHhh
Confidence 655443
No 9
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.12 E-value=1.5e-05 Score=70.51 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=64.0
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC-CChhh-HHHHHHHhhccCceEEEccC
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH-IQLET-VSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG-~~~~~-~~~l~~~a~~~~~~vv~spN 83 (219)
++++++|++++ . ..+|+|||+|.+....+++..|+++|+++|++++| +++.+ .++|.++|++.+..+.+ |+
T Consensus 48 ~~~~~~d~~~l-~-----~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~s 120 (265)
T PRK13303 48 AVRVVSSVDAL-P-----QRPDLVVECAGHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LS 120 (265)
T ss_pred CCeeeCCHHHh-c-----cCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eC
Confidence 56788899887 4 37999999999999999999999999999999999 55444 57899999988887666 66
Q ss_pred hhHHH
Q 027747 84 LSIGS 88 (219)
Q Consensus 84 fSlGv 88 (219)
.++|.
T Consensus 121 ga~gg 125 (265)
T PRK13303 121 GAIGG 125 (265)
T ss_pred hHhhC
Confidence 66666
No 10
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=97.82 E-value=0.00017 Score=62.87 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=86.9
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC-C-ChhhHHHHHHHhhccCceEEEc
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH-I-QLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG-~-~~~~~~~l~~~a~~~~~~vv~s 81 (219)
.+|+++++|+++++. ..+|+|+.-|.+....++...+++.|+++++-.+| + +.++.++|.+++++.+.++.+.
T Consensus 21 ~~g~~~~~d~~eLl~-----~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gAlad~e~~~~l~~aA~~~g~~l~i~ 95 (229)
T TIGR03855 21 RCGAKIVSDFDEFLP-----EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGALADRELRERLREVARSSGRKVYIP 95 (229)
T ss_pred HhCCceECCHHHHhc-----CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCcccCCHHHHHHHHHHHHhcCCEEEEC
Confidence 356788999999986 36999999999999999999999999999998887 4 5577889999999999999999
Q ss_pred cChhHHHHHHHHHHHHHhh-hcCCeEEEec-CCC--CCC------CCcHHHHHHHHHH
Q 027747 82 PTLSIGSILLQQAAISASF-HYKNVEIVES-RPN--ARD------FPSPDATQIANNL 129 (219)
Q Consensus 82 pNfSlGv~ll~~~~~~aa~-~~~dieIiE~-Hh~--K~D------aPSGTA~~la~~i 129 (219)
+.+--|.-. ++.+.- .+..+.++=+ |+. |.+ .=+|+|...+...
T Consensus 96 sGai~g~d~----l~a~~ig~~~~V~i~~~k~p~~~~~~~~~~~~~f~G~a~ea~~~f 149 (229)
T TIGR03855 96 SGAIGGLDA----LKAASLGRIERVVLTTTKPPASLGRDIKEPTTIFEGSASEAIKLF 149 (229)
T ss_pred hHHHHHHHH----HHhcccCCceEEEEEEecChHHhcCCCCCCEEEEEecHHHHHHHC
Confidence 855555444 433321 1234554443 543 432 1268888877654
No 11
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.76 E-value=4.1e-05 Score=58.97 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=57.7
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh--hhHHHHHHHhhccCceEEE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL--ETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~--~~~~~l~~~a~~~~~~vv~ 80 (219)
+..+..+++++++. ..+|||||-|.++.+.+.++.++++|+++|+...|.-. ...++|.+++++++..+.|
T Consensus 44 ~~~~~~~~~~~~~~----~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 44 DEAFTTDLEELIDD----PDIDVVVECTSSEAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HSCEESSHHHHHTH----TT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEEE
T ss_pred cccccCCHHHHhcC----cCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEEe
Confidence 34567899999864 26999999999999999999999999999999988655 6788999999999888765
No 12
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.61 E-value=0.0004 Score=61.36 Aligned_cols=79 Identities=9% Similarity=0.088 Sum_probs=65.2
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCC--ChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~--~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
++++++.++++++. .+|+||+.+.|+...+.++.+++.|+++++.++|- +++..++|.+++++++..+.+.+
T Consensus 47 ~~~~~~~~~~ell~------~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~s 120 (265)
T PRK13304 47 TGAKACLSIDELVE------DVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPS 120 (265)
T ss_pred cCCeeECCHHHHhc------CCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeC
Confidence 45677889999884 69999999999999999999999999999998874 66667899999998888877755
Q ss_pred ChhHHHH
Q 027747 83 TLSIGSI 89 (219)
Q Consensus 83 NfSlGv~ 89 (219)
-.-.|..
T Consensus 121 ga~~g~d 127 (265)
T PRK13304 121 GAIVGLD 127 (265)
T ss_pred chHHhHH
Confidence 4444343
No 13
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.26 E-value=0.0016 Score=58.28 Aligned_cols=80 Identities=10% Similarity=0.157 Sum_probs=64.0
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC-CChh-hHHHHHHHhhccCceEEEccCh
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH-IQLE-TVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG-~~~~-~~~~l~~~a~~~~~~vv~spNf 84 (219)
+++.+|+++++. ..+|+||+..+|+++.++.+.+++.|+.+|+..+| |.++ -.++|++++++.+..+.+.+=-
T Consensus 49 ~~~~~~l~~ll~-----~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 49 VALLDGLPGLLA-----WRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred CcccCCHHHHhh-----cCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChH
Confidence 567889999875 37999999999999999999999999999999998 5443 3678999998877777775543
Q ss_pred hHHHHHH
Q 027747 85 SIGSILL 91 (219)
Q Consensus 85 SlGv~ll 91 (219)
=-|.-.+
T Consensus 124 igGlD~l 130 (267)
T PRK13301 124 IAGLDYL 130 (267)
T ss_pred HHhHHHH
Confidence 3333333
No 14
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.14 E-value=0.0027 Score=48.21 Aligned_cols=73 Identities=25% Similarity=0.302 Sum_probs=63.0
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEE
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
.++++.++|++++++. ..+|+|+-.|.+..=.+.++.|++.|+++++=-. +.+.++.++|.+++++++..+.+
T Consensus 45 ~~~~~~~~~~~~ll~~----~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 45 KYGIPVYTDLEELLAD----EDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HTTSEEESSHHHHHHH----TTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEE
T ss_pred HhcccchhHHHHHHHh----hcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 3578899999999984 3699999999999999999999999998888664 46788999999999988887654
No 15
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.00 E-value=0.0021 Score=58.95 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=66.4
Q ss_pred cCHHHHHhcccCCCCCcEEEECCCh-----hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p-----~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
.++++++.. ..+|||||.|-+ +...++++.|+++|+++|+++.+....+.++|.++++++++.+.+-....
T Consensus 79 ~d~~ell~~----~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~ 154 (341)
T PRK06270 79 ISGLEVIRS----VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVG 154 (341)
T ss_pred CCHHHHhhc----cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeee
Confidence 478888863 368999997754 34588999999999999999988877778899999999999999877777
Q ss_pred HHHHHHHHHHHH
Q 027747 86 IGSILLQQAAIS 97 (219)
Q Consensus 86 lGv~ll~~~~~~ 97 (219)
-|.-++..+-+.
T Consensus 155 ~glPii~~l~~~ 166 (341)
T PRK06270 155 GAMPIINLAKET 166 (341)
T ss_pred echhHHHHHHhh
Confidence 777776654443
No 16
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.72 E-value=0.0076 Score=54.44 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=64.1
Q ss_pred CccccccCHHHHHhcccCCCC--CcEEEECCChhhHHHHHHHHHHcCCcE-EEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 5 LEIPVMSDLTMVLGSISQSKA--RAVVIDFTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~--~DVvIDFS~p~~~~~~~~~~~~~g~p~-ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+|++.+++++++-+ . +|++|=+..++.+.+.++.|.+.|++. ||=|.||..++.++|.++++++++.+ +-
T Consensus 49 ~G~~~y~sv~dlp~------~~~~DlAvi~vp~~~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girv-lG 121 (291)
T PRK05678 49 LGLPVFNTVAEAVE------ATGANASVIYVPPPFAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRL-IG 121 (291)
T ss_pred eCeeccCCHHHHhh------ccCCCEEEEEcCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEE-EC
Confidence 58899999999975 4 899998999999999999999999876 67788998765568999998887764 56
Q ss_pred cChhHHHHH
Q 027747 82 PTLSIGSIL 90 (219)
Q Consensus 82 pNfSlGv~l 90 (219)
|| |+|+..
T Consensus 122 PN-c~Gi~~ 129 (291)
T PRK05678 122 PN-CPGIIT 129 (291)
T ss_pred CC-CCcccc
Confidence 88 346533
No 17
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.64 E-value=0.013 Score=52.00 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=62.7
Q ss_pred ccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHH
Q 027747 8 PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 8 ~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
+.++++++++. .+|+||..+.++...+....+++.|+++++-.+|- ..+.++|.+++++++.++.+.+.|--|
T Consensus 56 ~~~~~~eell~------~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~ga-l~~~~~L~~~A~~~g~~l~v~sGa~~g 128 (271)
T PRK13302 56 PPVVPLDQLAT------HADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVGA-LLRNEDLIDLARQNGGQIIVPTGALLG 128 (271)
T ss_pred cccCCHHHHhc------CCCEEEECCCcHHHHHHHHHHHHcCCcEEEecchh-HHhHHHHHHHHHHcCCEEEEcchHHHh
Confidence 46788999875 58999999999999999999999999999877762 234578899999999999898777777
Q ss_pred HH
Q 027747 88 SI 89 (219)
Q Consensus 88 v~ 89 (219)
.-
T Consensus 129 ~d 130 (271)
T PRK13302 129 LD 130 (271)
T ss_pred HH
Confidence 54
No 18
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.55 E-value=0.013 Score=52.93 Aligned_cols=79 Identities=18% Similarity=0.289 Sum_probs=63.4
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcE-EEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~-ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
.|++.+++++++-+.+ .+|++|=+..++.+.+.++.|.+.|++. ||=|.||.+...++|.+.++++++.+ +-||
T Consensus 47 ~G~~~y~sv~dlp~~~----~~Dlavi~vpa~~v~~~l~e~~~~Gvk~avIis~Gf~e~~~~~l~~~a~~~giri-lGPN 121 (286)
T TIGR01019 47 LGLPVFDSVKEAVEET----GANASVIFVPAPFAADAIFEAIDAGIELIVCITEGIPVHDMLKVKRYMEESGTRL-IGPN 121 (286)
T ss_pred cCeeccCCHHHHhhcc----CCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEE-ECCC
Confidence 5889999999997520 2799998999999999999999999855 57788998765678999998887764 5677
Q ss_pred hhHHHH
Q 027747 84 LSIGSI 89 (219)
Q Consensus 84 fSlGv~ 89 (219)
++|+.
T Consensus 122 -c~Gii 126 (286)
T TIGR01019 122 -CPGII 126 (286)
T ss_pred -CceEE
Confidence 44443
No 19
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=96.42 E-value=0.017 Score=52.81 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=62.2
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe-cCCCChhhHHHHHHHhhc-cCceEEEccC
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCDK-ASMGCLIAPT 83 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG-TTG~~~~~~~~l~~~a~~-~~~~vv~spN 83 (219)
|+|+|++++++.+. ..+|+.|=|.-|..+.+.++.|.+.|++.++. |.||.+.+..++++++++ +++ -++-||
T Consensus 73 Gvpvy~sv~ea~~~----~~~D~avI~VPa~~v~dai~Ea~~aGI~~~ViiteGfpe~d~~~l~~~~~~~~g~-rliGPN 147 (317)
T PTZ00187 73 GLPVFATVKEAKKA----TGADASVIYVPPPHAASAIIEAIEAEIPLVVCITEGIPQHDMVKVKHALLSQNKT-RLIGPN 147 (317)
T ss_pred CccccCCHHHHhcc----cCCCEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCchhhHHHHHHHHhhcCCC-EEECCC
Confidence 89999999999863 24899999999999999999999999999665 558887666667666643 444 577788
Q ss_pred hhHHHHHH
Q 027747 84 LSIGSILL 91 (219)
Q Consensus 84 fSlGv~ll 91 (219)
+.|+...
T Consensus 148 -c~Gii~p 154 (317)
T PTZ00187 148 -CPGIIKP 154 (317)
T ss_pred -CceEEcc
Confidence 4555443
No 20
>PRK06349 homoserine dehydrogenase; Provisional
Probab=96.28 E-value=0.01 Score=56.02 Aligned_cols=84 Identities=11% Similarity=0.127 Sum_probs=66.3
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCCh-hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p-~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
..+++|+++++.. ...|+|||-|.+ +...+.++.|+++|+++|+---+...++.++|.++|+++++.+.+.+...
T Consensus 58 ~~~~~d~~~ll~d----~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ 133 (426)
T PRK06349 58 ILLTTDPEELVND----PDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVA 133 (426)
T ss_pred cceeCCHHHHhhC----CCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEee
Confidence 4578899999863 368999999854 56689999999999999986556666777899999999999999886666
Q ss_pred HHHHHHHHH
Q 027747 86 IGSILLQQA 94 (219)
Q Consensus 86 lGv~ll~~~ 94 (219)
-|+-++..+
T Consensus 134 ggiPii~~l 142 (426)
T PRK06349 134 GGIPIIKAL 142 (426)
T ss_pred ccCchHHHH
Confidence 565555444
No 21
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=96.24 E-value=0.022 Score=51.78 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=62.3
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCc-EEEecCCCChhhH-HHHHHHhhccCceEEEcc
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLETV-SALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p-~ViGTTG~~~~~~-~~l~~~a~~~~~~vv~sp 82 (219)
.|++++++++++.+. ..+|++|=+.-++.+.+.++.|.+.|++ +||-|.||.+... +.+.++++++++. |+-|
T Consensus 53 ~G~~~y~sv~dlp~~----~~~DlAvI~vPa~~v~~al~e~~~~Gvk~~vIisaGf~e~g~~~~~~~~ar~~gir-viGP 127 (300)
T PLN00125 53 LGLPVFNTVAEAKAE----TKANASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNRQSKTR-LIGP 127 (300)
T ss_pred cCeeccCCHHHHhhc----cCCCEEEEecCHHHHHHHHHHHHHcCCCEEEEECCCCCcccHHHHHHHHHhhcCCE-EECC
Confidence 589999999999852 1379999899999999999999999998 6688889987643 4555667766554 5678
Q ss_pred ChhHHHHH
Q 027747 83 TLSIGSIL 90 (219)
Q Consensus 83 NfSlGv~l 90 (219)
| |+|+..
T Consensus 128 N-c~Gii~ 134 (300)
T PLN00125 128 N-CPGIIK 134 (300)
T ss_pred C-Cceeec
Confidence 8 455544
No 22
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.01 E-value=0.043 Score=48.34 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=58.1
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC-CChhh-HHHHHHHhhccCceEEEccChhHH
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH-IQLET-VSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG-~~~~~-~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
.+++++.+. .+|++|+..+|+++.+++..++++|+++++=.+| |.++. .++++++++..+..+.+.+----|
T Consensus 51 ~s~ide~~~------~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGG 124 (255)
T COG1712 51 VSDIDELIA------EVDLVVEAASPEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGG 124 (255)
T ss_pred cccHHHHhh------ccceeeeeCCHHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchh
Confidence 368888875 6999999999999999999999999999999999 66544 577888887666666555443333
Q ss_pred H
Q 027747 88 S 88 (219)
Q Consensus 88 v 88 (219)
.
T Consensus 125 l 125 (255)
T COG1712 125 L 125 (255)
T ss_pred H
Confidence 3
No 23
>PLN02522 ATP citrate (pro-S)-lyase
Probab=95.97 E-value=0.031 Score=55.31 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=58.5
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhH-HHHHHHHHHcCCcEEEe-cCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~-~~~~~~~~~~g~p~ViG-TTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+++|||++.++++++ ...+|+.|-|-.|..+ .+.++.|.+.|++.|+. |.|+.+.+..+|.++++++++. ++-|
T Consensus 61 ~~iPVf~tv~eA~~~---~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r-lIGP 136 (608)
T PLN02522 61 IAIPVHGSIEAACKA---HPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV-VIGP 136 (608)
T ss_pred eCccccchHHHHHHh---CCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE-EECC
Confidence 689999999999974 1358999999977655 55556666679876655 5589887778899999888775 6678
Q ss_pred Ch
Q 027747 83 TL 84 (219)
Q Consensus 83 Nf 84 (219)
|-
T Consensus 137 Nc 138 (608)
T PLN02522 137 AT 138 (608)
T ss_pred CC
Confidence 73
No 24
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=95.86 E-value=0.027 Score=43.82 Aligned_cols=74 Identities=19% Similarity=0.322 Sum_probs=50.7
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.|.+.+.++++. . ..+|+++=|+.|+.+.+.++.|.+.|+.-|+-.+|-. .+++.+++++.+++++ .||
T Consensus 41 ~G~~~y~sl~e~-p-----~~iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g~~---~~~~~~~a~~~gi~vi-gp~- 109 (116)
T PF13380_consen 41 LGIKCYPSLAEI-P-----EPIDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPGAE---SEELIEAAREAGIRVI-GPN- 109 (116)
T ss_dssp TTEE-BSSGGGC-S-----ST-SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TTS-----HHHHHHHHHTT-EEE-ESS-
T ss_pred CcEEeeccccCC-C-----CCCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcchH---HHHHHHHHHHcCCEEE-eCC-
Confidence 477889999883 2 3799999999999999999999999999999999932 2567777877777643 344
Q ss_pred hHHHH
Q 027747 85 SIGSI 89 (219)
Q Consensus 85 SlGv~ 89 (219)
++|+.
T Consensus 110 C~gv~ 114 (116)
T PF13380_consen 110 CLGVV 114 (116)
T ss_dssp -HHHH
T ss_pred cceEE
Confidence 55554
No 25
>PRK11579 putative oxidoreductase; Provisional
Probab=95.65 E-value=0.12 Score=46.92 Aligned_cols=87 Identities=16% Similarity=0.117 Sum_probs=68.1
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe-cCCCChhhHHHHHHHhhccCceEEEccC-
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPT- 83 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG-TTG~~~~~~~~l~~~a~~~~~~vv~spN- 83 (219)
++++++|++++|+. .+.|+|+-.|-+..=.+.+..|++.|+++++= --..+.++-++|.++|+++++.+.+..|
T Consensus 49 ~~~~~~~~~ell~~----~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~ 124 (346)
T PRK11579 49 TVTVVSEPQHLFND----PNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNR 124 (346)
T ss_pred CCceeCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeec
Confidence 45678999999973 36899998998888899999999999998864 2245678888999999988888777766
Q ss_pred -hhHHHHHHHHHHH
Q 027747 84 -LSIGSILLQQAAI 96 (219)
Q Consensus 84 -fSlGv~ll~~~~~ 96 (219)
|.-...-+.++++
T Consensus 125 R~~p~~~~~k~~i~ 138 (346)
T PRK11579 125 RWDSDFLTLKALLA 138 (346)
T ss_pred cCCHHHHHHHHHHh
Confidence 4555555555554
No 26
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=95.36 E-value=0.066 Score=48.39 Aligned_cols=74 Identities=19% Similarity=0.321 Sum_probs=61.6
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+|+||+++.++++++ ..+|+-|=|-.|..+.+.+..|+++++++|++-| |....+.-++.++++++++ .++-||
T Consensus 49 ~g~PVf~tV~EA~~~----~~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g~-~iiGPn 123 (293)
T COG0074 49 LGLPVFNTVEEAVKE----TGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKGT-RLIGPN 123 (293)
T ss_pred cCccHHHHHHHHHHh----hCCCEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcCC-EEECCC
Confidence 578999999999985 3699988899999999999999999999999977 7777777778888877764 344455
No 27
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.28 E-value=0.059 Score=51.22 Aligned_cols=76 Identities=14% Similarity=0.175 Sum_probs=60.2
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEE-EecCCCChhh------HHHHHHHhhccCce
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSV-VYVPHIQLET------VSALSAFCDKASMG 77 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~V-iGTTG~~~~~------~~~l~~~a~~~~~~ 77 (219)
.|++++++++++-. .+|++|=|..|+.+.+.++.|.+.|++.+ +=|.||.+.. .++|.+++++.++.
T Consensus 50 ~G~~~~~sl~~lp~------~~Dlavi~vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~gir 123 (447)
T TIGR02717 50 LGVKAYPSVLEIPD------PVDLAVIVVPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMR 123 (447)
T ss_pred CCccccCCHHHCCC------CCCEEEEecCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCE
Confidence 57899999999843 68999999999999999999999998755 6688897621 36788899887776
Q ss_pred EEEccChhHHH
Q 027747 78 CLIAPTLSIGS 88 (219)
Q Consensus 78 vv~spNfSlGv 88 (219)
+ +-||- +|+
T Consensus 124 v-lGPnc-~G~ 132 (447)
T TIGR02717 124 L-LGPNC-LGI 132 (447)
T ss_pred E-EecCe-eeE
Confidence 4 44663 554
No 28
>PRK10206 putative oxidoreductase; Provisional
Probab=95.26 E-value=0.18 Score=46.06 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=68.0
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccC--
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT-- 83 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spN-- 83 (219)
+++++|++++|+. .+.|+|+--|-+..=.+.+..|+++|+++.+=-. ..+.++.++|.++++++++.+....|
T Consensus 50 ~~~~~~~~ell~~----~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R 125 (344)
T PRK10206 50 IHFTSDLDEVLND----PDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRR 125 (344)
T ss_pred CcccCCHHHHhcC----CCCCEEEEeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeee
Confidence 6788999999973 4689888888888889999999999999987533 35567888999999999998888877
Q ss_pred hhHHHHHHHHHHH
Q 027747 84 LSIGSILLQQAAI 96 (219)
Q Consensus 84 fSlGv~ll~~~~~ 96 (219)
|.-...-+.++++
T Consensus 126 ~~p~~~~~k~li~ 138 (344)
T PRK10206 126 FDSCFLTAKKAIE 138 (344)
T ss_pred ECHHHHHHHHHHH
Confidence 4445555555554
No 29
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.03 E-value=0.039 Score=50.68 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=64.3
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChh-hH---HHH--HHHhhccCceEE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE-TV---SAL--SAFCDKASMGCL 79 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~-~~---~~l--~~~a~~~~~~vv 79 (219)
++++..++++++. ++|+|||||.+....++++.|++.|+++|+-..-+... +. ..+ +++. ..+ +
T Consensus 65 ~i~V~~~~~el~~------~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~~~~~~~~~~v~~vN~~~~~-~~~--~- 134 (341)
T PRK04207 65 GIPVAGTIEDLLE------KADIVVDATPGGVGAKNKELYEKAGVKAIFQGGEKAEVAGVSFNALANYEEAL-GKD--Y- 134 (341)
T ss_pred ceEEcCChhHhhc------cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCCCCCCCCCCcEEeeECHHHhC-CCC--c-
Confidence 5778888888874 69999999999999999999999998888755433211 10 000 1111 112 2
Q ss_pred EccChhHHHHHHHHHHHHHhhhc--CCeEEEecCCCCCCCCcHH
Q 027747 80 IAPTLSIGSILLQQAAISASFHY--KNVEIVESRPNARDFPSPD 121 (219)
Q Consensus 80 ~spNfSlGv~ll~~~~~~aa~~~--~dieIiE~Hh~K~DaPSGT 121 (219)
..|-|--.+-|..+++.+-+.| -.+-+.=.|.- .| |.++
T Consensus 135 -v~~~sCtT~~l~~~l~~L~~~fgI~~~~vTtv~a~-td-~~~~ 175 (341)
T PRK04207 135 -VRVVSCNTTGLCRTLCALDRAFGVKKVRATLVRRA-AD-PKEV 175 (341)
T ss_pred -EEccChHHHHHHHHHHHHHHhcCceEEEEEEEEcC-CC-cchh
Confidence 3455666666666666665544 34445555552 24 5555
No 30
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=94.56 E-value=0.08 Score=48.64 Aligned_cols=72 Identities=19% Similarity=0.106 Sum_probs=55.1
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHH
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 91 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll 91 (219)
+|.++++ .+||||+..-|......++.|++.|++.|- |.+-.++...+.+.++++++.+|.+.=|.-|..-+
T Consensus 60 ~l~~~~~------~~dvVin~~gp~~~~~v~~~~i~~g~~yvD--~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~ 131 (386)
T PF03435_consen 60 SLAELLR------GCDVVINCAGPFFGEPVARACIEAGVHYVD--TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNL 131 (386)
T ss_dssp HHHHHHT------TSSEEEE-SSGGGHHHHHHHHHHHT-EEEE--SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHH
T ss_pred HHHHHHh------cCCEEEECCccchhHHHHHHHHHhCCCeec--cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHH
Confidence 3556664 689999999999899999999999999998 54433466788888888999999999999887654
No 31
>PRK06091 membrane protein FdrA; Validated
Probab=94.25 E-value=0.25 Score=48.53 Aligned_cols=75 Identities=8% Similarity=0.109 Sum_probs=63.6
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
..+.+.++.++++.. ..+|++|=+..++.+.+.++.|.+.|+.+||-|.||..+...+|+++++++++. ++-||-
T Consensus 101 ~~~~~~t~~~a~~~l---pe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~gfg~~~E~~L~e~Ar~~Glr-vmGPNC 175 (555)
T PRK06091 101 SLTQVRRWDSACQKL---PDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVTLEDEIRLKTRAREKGLL-VMGPDC 175 (555)
T ss_pred CCcccccHHHHHhcC---CCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcCCCCHHHHHHHHHHHHHcCCE-EECCCC
Confidence 456777888887642 346988889999999999999999999999999999987788999999887765 578999
No 32
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.67 E-value=0.32 Score=43.20 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=62.9
Q ss_pred Cccc-cccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIP-VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~-v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
++++ .+.|++++|.. ...|+|+--|-+..=.+.+..|+++|+++.+=-- ..+.++-+.|.++++++++.+.+.-
T Consensus 50 ~~~~~~~~~~~~ll~~----~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~ 125 (342)
T COG0673 50 FGIAKAYTDLEELLAD----PDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGF 125 (342)
T ss_pred cCCCcccCCHHHHhcC----CCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeeh
Confidence 4554 89999999984 3479888888778888999999999998886333 3556778899999999888888888
Q ss_pred ChhHH
Q 027747 83 TLSIG 87 (219)
Q Consensus 83 NfSlG 87 (219)
|+-.-
T Consensus 126 ~~Rf~ 130 (342)
T COG0673 126 NRRFD 130 (342)
T ss_pred hhhcC
Confidence 86655
No 33
>PRK06392 homoserine dehydrogenase; Provisional
Probab=93.47 E-value=0.15 Score=46.82 Aligned_cols=78 Identities=14% Similarity=0.041 Sum_probs=63.2
Q ss_pred CHHHHHhcccCCCCCcEEEECCCh--h--hHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHH
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDA--S--TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p--~--~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
++++++. .++||+||-|.. + -...+++.++++|+++|..--|.-....++|.++++++++.+.|.++..=|
T Consensus 73 ~~~~ll~-----~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g 147 (326)
T PRK06392 73 KFDEIFE-----IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGG 147 (326)
T ss_pred CHHHHhc-----CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeec
Confidence 4566654 368999999942 1 257788999999999999887765567889999999999999999999888
Q ss_pred HHHHHHH
Q 027747 88 SILLQQA 94 (219)
Q Consensus 88 v~ll~~~ 94 (219)
.-++.-+
T Consensus 148 ~Pii~~~ 154 (326)
T PRK06392 148 VPLFSLR 154 (326)
T ss_pred cchhhhh
Confidence 8887644
No 34
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.33 E-value=0.89 Score=47.87 Aligned_cols=84 Identities=23% Similarity=0.105 Sum_probs=68.5
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHH
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 89 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ 89 (219)
..|.++++..+ ..+|+||--+-+..=...++.|+++|+++|.=+ ++.++...|.+.|+++++.++...+|.-|+.
T Consensus 636 v~D~e~L~~~v---~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid 710 (1042)
T PLN02819 636 VSDSESLLKYV---SQVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITILCEMGLDPGID 710 (1042)
T ss_pred cCCHHHHHHhh---cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEEEECCccCHHHH
Confidence 45666766532 259999999988888899999999999998654 7778888999999999999999999999998
Q ss_pred H--HHHHHHHH
Q 027747 90 L--LQQAAISA 98 (219)
Q Consensus 90 l--l~~~~~~a 98 (219)
- .++++...
T Consensus 711 ~~lA~~~Id~~ 721 (1042)
T PLN02819 711 HMMAMKMIDDA 721 (1042)
T ss_pred HHHHHHHHHhh
Confidence 7 45566655
No 35
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.05 E-value=0.35 Score=45.58 Aligned_cols=84 Identities=15% Similarity=0.068 Sum_probs=66.6
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHH
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 89 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ 89 (219)
.+.+.++|. +.|+||..--|..-...++.|++.|+++|- || +.++..-++++.++++++-++...=|+-|+.
T Consensus 59 ~~al~~li~------~~d~VIn~~p~~~~~~i~ka~i~~gv~yvD-ts-~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 59 VDALVALIK------DFDLVINAAPPFVDLTILKACIKTGVDYVD-TS-YYEEPPWKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred hHHHHHHHh------cCCEEEEeCCchhhHHHHHHHHHhCCCEEE-cc-cCCchhhhhhHHHHHcCeEEEcccCcCcchH
Confidence 346667775 579999999999999999999999999985 33 4333346788889999999999999999986
Q ss_pred HHHHHHHHHhhhcC
Q 027747 90 LLQQAAISASFHYK 103 (219)
Q Consensus 90 ll~~~~~~aa~~~~ 103 (219)
.+ ++..+++.|+
T Consensus 131 nv--~a~~a~~~~~ 142 (389)
T COG1748 131 NV--LAAYAAKELF 142 (389)
T ss_pred HH--HHHHHHHHhh
Confidence 54 4666666665
No 36
>PRK06813 homoserine dehydrogenase; Validated
Probab=92.69 E-value=0.22 Score=46.05 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=60.3
Q ss_pred CCcEEEECCCh-----hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHH
Q 027747 25 ARAVVIDFTDA-----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 94 (219)
Q Consensus 25 ~~DVvIDFS~p-----~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~ 94 (219)
..||+||.|.. +...+.++.|+++|+++|..-=+.-....++|.++++++++.+.|-++..=|+-++.-+
T Consensus 86 ~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPiI~~l 160 (346)
T PRK06813 86 SGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPTLDIG 160 (346)
T ss_pred CCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccchHHHH
Confidence 57999999864 56789999999999999988777666777899999999999999999988888777655
No 37
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=91.41 E-value=1.4 Score=40.72 Aligned_cols=87 Identities=10% Similarity=0.105 Sum_probs=61.9
Q ss_pred CCccccccCHHHHHhcccCCCCCcE-EEEC--CChh-hHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEE
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAV-VIDF--TDAS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DV-vIDF--S~p~-~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv 79 (219)
.+|++.+.|+++++. .+|+ +|.- +.|. .=.+.+..|++.|+++.+=-. +..++-++|.++|+++++.+.
T Consensus 47 ~~gi~~y~~~eell~------d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKP-la~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 47 RLGVPLYCEVEELPD------DIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHP-LHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HhCCCccCCHHHHhc------CCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCC-CCHHHHHHHHHHHHHcCCEEE
Confidence 367889999999996 4563 3332 2233 337888999999998776433 445777889999998888777
Q ss_pred EccChhHHHHHHHHHHHHH
Q 027747 80 IAPTLSIGSILLQQAAISA 98 (219)
Q Consensus 80 ~spNfSlGv~ll~~~~~~a 98 (219)
+ ..|.-.+..+.++++..
T Consensus 120 v-~~f~p~~~~vr~~i~~~ 137 (343)
T TIGR01761 120 V-NTFYPHLPAVRRFIEYA 137 (343)
T ss_pred E-EecCHHHHHHHHHHHcc
Confidence 6 55777777777776554
No 38
>KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=91.25 E-value=0.78 Score=41.04 Aligned_cols=77 Identities=12% Similarity=0.177 Sum_probs=59.4
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEcc
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
-+|.||+.+..++.++ .++|.-+=|--|...-..+..+++.-+|+|++-| |.-+.+.-+++..-..+.-.=++-|
T Consensus 78 HLG~PVF~sV~eA~~~----t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGP 153 (329)
T KOG1255|consen 78 HLGLPVFNSVAEAKKE----TGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGP 153 (329)
T ss_pred ccCchhhhhHHHHHHh----hCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCC
Confidence 3788999999999886 3788777799999999999999999999999988 7766666666655333334446666
Q ss_pred Ch
Q 027747 83 TL 84 (219)
Q Consensus 83 Nf 84 (219)
|-
T Consensus 154 NC 155 (329)
T KOG1255|consen 154 NC 155 (329)
T ss_pred CC
Confidence 63
No 39
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=90.86 E-value=2.9 Score=36.44 Aligned_cols=117 Identities=16% Similarity=0.160 Sum_probs=79.7
Q ss_pred ccCHHHHHhcccCCCCCcEEEECC-ChhhHHHHHHHHHHcCCcEEEecCCCCh-hhHHHHHHHhhccCceEEEccChh--
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQL-ETVSALSAFCDKASMGCLIAPTLS-- 85 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGTTG~~~-~~~~~l~~~a~~~~~~vv~spNfS-- 85 (219)
.++.++.|.. ...+|++|.++ ||+.+.+..+.|.+.|...||.-++-.. .-...|++.+++.++-+++.-.|-
T Consensus 39 Id~pee~Lp~---i~~~Dl~I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL 115 (217)
T PF02593_consen 39 IDDPEEYLPK---IPEADLLIAYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSL 115 (217)
T ss_pred ccChHHHccC---CCCCCEEEEeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCcccccc
Confidence 3456666654 35799999965 7999999999999999999987664322 234567777766666666655442
Q ss_pred --HHHHHHHHHHHHHhhhcCCeEE-EecCC----C-CCCCCcHHHHHHHHHHHh
Q 027747 86 --IGSILLQQAAISASFHYKNVEI-VESRP----N-ARDFPSPDATQIANNLSN 131 (219)
Q Consensus 86 --lGv~ll~~~~~~aa~~~~dieI-iE~Hh----~-K~DaPSGTA~~la~~i~~ 131 (219)
-|--.+.+|++...+ |-+|| ++-.. + +++||=|.+..+|+.+..
T Consensus 116 ~~~~~p~i~~F~~~fGk--P~~ei~v~~~~I~~V~VlR~aPCGsT~~vAk~l~G 167 (217)
T PF02593_consen 116 EENGNPQIDEFAEYFGK--PKVEIEVENGKIKDVKVLRSAPCGSTWFVAKRLIG 167 (217)
T ss_pred CCCCChhHHHHHHHhCC--ceEEEEecCCcEEEEEEEecCCCccHHHHHHHhcC
Confidence 123334555555332 77777 35322 4 689999999999999854
No 40
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=88.61 E-value=1.3 Score=45.43 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=62.3
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh---hhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 98 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~---~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~a 98 (219)
..||+||.|.-+........|+++|+++|..--+.-. ++..+|.++++++++.+.|.++..=|+-++.-+-..+
T Consensus 547 ~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~~~~ 623 (819)
T PRK09436 547 LNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQNLL 623 (819)
T ss_pred CCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHHHHH
Confidence 4689999998877788889999999999988776544 5789999999999999999999998988876654443
No 41
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=88.29 E-value=2 Score=39.66 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=52.5
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHH---HHcCCcEEEecCCCChh--hHHHHHHHhhc---cCceE
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQLE--TVSALSAFCDK---ASMGC 78 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~---~~~g~p~ViGTTG~~~~--~~~~l~~~a~~---~~~~v 78 (219)
+.+++|++++++ .+|++|=-..+..+.+.++.. ++.+.++|..|=|++.+ ....+.+..++ ..+.+
T Consensus 70 i~at~dl~eal~------~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~ 143 (342)
T TIGR03376 70 LVAVPDLVEAAK------GADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGV 143 (342)
T ss_pred eEEECCHHHHHh------cCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEE
Confidence 557789999986 689887444444444545443 45578999999999887 44444433222 45677
Q ss_pred EEccChhHHHHH
Q 027747 79 LIAPTLSIGSIL 90 (219)
Q Consensus 79 v~spNfSlGv~l 90 (219)
+.-|||+.-+..
T Consensus 144 lsGP~~A~Eva~ 155 (342)
T TIGR03376 144 LSGANLANEVAK 155 (342)
T ss_pred eeCcchHHHHHc
Confidence 889999877643
No 42
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=87.72 E-value=0.84 Score=34.67 Aligned_cols=82 Identities=16% Similarity=0.026 Sum_probs=49.5
Q ss_pred HHHHHhcccCCCCCcEEEECCC-hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHH
Q 027747 13 LTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 91 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~-p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll 91 (219)
+.+-+.+......+|++||++- ++.+...++.+...|.=+++|.++-....+....-.. +++-++-+.+.+ ..-+
T Consensus 46 ~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~~~~~~~~~~~~~~--~~~~i~g~~~~~--~~~~ 121 (130)
T PF00107_consen 46 FVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYGGDPISFNLMNLMF--KEITIRGSWGGS--PEDF 121 (130)
T ss_dssp HHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTSTSEEEEEHHHHHH--TTEEEEEESSGG--HHHH
T ss_pred cccccccccccccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccCCCCCCCCHHHHHh--CCcEEEEEccCC--HHHH
Confidence 3333333333346899999998 8888888888888888888888873332333333333 445556555555 3344
Q ss_pred HHHHHHH
Q 027747 92 QQAAISA 98 (219)
Q Consensus 92 ~~~~~~a 98 (219)
.++++.+
T Consensus 122 ~~~~~~l 128 (130)
T PF00107_consen 122 QEALQLL 128 (130)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 43
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=87.23 E-value=3.9 Score=34.31 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=48.6
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHH
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 90 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~l 90 (219)
.++.++. .++| +++..+.|+.+.+.++.|.+.|+|+|.--++ ........+.+-..|+..|..+
T Consensus 47 ~i~~~i~-----~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~----------~~~~~~~~~~v~~d~~~~G~~~ 111 (257)
T PF13407_consen 47 QIEQAIS-----QGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD----------EAPDSPRAAYVGTDNYEAGKLA 111 (257)
T ss_dssp HHHHHHH-----TTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST----------HHTTSTSSEEEEE-HHHHHHHH
T ss_pred HHHHHHH-----hcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc----------ccccccceeeeeccHHHHHHHH
Confidence 4555665 3699 5667788888999999999999999996665 0111244556666666666666
Q ss_pred HHHHHHHHh
Q 027747 91 LQQAAISAS 99 (219)
Q Consensus 91 l~~~~~~aa 99 (219)
...+++...
T Consensus 112 a~~l~~~~~ 120 (257)
T PF13407_consen 112 AEYLAEKLG 120 (257)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 655555544
No 44
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=86.89 E-value=2.2 Score=34.38 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=47.5
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHH---HHHcCCcEEEecCCCChhh----HHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQ---ATAFGMRSVVYVPHIQLET----VSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~---~~~~g~p~ViGTTG~~~~~----~~~l~~~a~~~~~~v 78 (219)
.+.+++|++++++ .+|++|=-+......+.++. +++.+.++|+.|-|+.... -+.+++......+.+
T Consensus 56 ~i~~t~dl~~a~~------~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~ 129 (157)
T PF01210_consen 56 NIKATTDLEEALE------DADIIIIAVPSQAHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAV 129 (157)
T ss_dssp TEEEESSHHHHHT------T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEE
T ss_pred ccccccCHHHHhC------cccEEEecccHHHHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEE
Confidence 4567899999996 79988844444444444444 4457899999988994422 245566655555888
Q ss_pred EEccChhHHH
Q 027747 79 LIAPTLSIGS 88 (219)
Q Consensus 79 v~spNfSlGv 88 (219)
+--|||+.-+
T Consensus 130 lsGP~~A~Ei 139 (157)
T PF01210_consen 130 LSGPSFAEEI 139 (157)
T ss_dssp EESS--HHHH
T ss_pred eeCccHHHHH
Confidence 9999997654
No 45
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.65 E-value=1.8 Score=38.99 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=52.7
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhh--HHHHHHHhhc---cCceEEEc
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET--VSALSAFCDK---ASMGCLIA 81 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~--~~~l~~~a~~---~~~~vv~s 81 (219)
+...+++++++. .+|+||=...+..+.+.++. ++.+..+|..+||+++++ ...+.+...+ .++.++-.
T Consensus 62 ~~~~~~~~e~~~------~aD~Vi~~v~~~~~~~v~~~-l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~g 134 (328)
T PRK14618 62 LYPTADPEEALA------GADFAVVAVPSKALRETLAG-LPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSG 134 (328)
T ss_pred eEEeCCHHHHHc------CCCEEEEECchHHHHHHHHh-cCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEEC
Confidence 345668877764 68999988877777666654 345678898999987653 4456555543 56777888
Q ss_pred cChhHHH
Q 027747 82 PTLSIGS 88 (219)
Q Consensus 82 pNfSlGv 88 (219)
||+.--+
T Consensus 135 P~~a~~~ 141 (328)
T PRK14618 135 PNHAEEI 141 (328)
T ss_pred ccHHHHH
Confidence 9987653
No 46
>PRK08223 hypothetical protein; Validated
Probab=84.19 E-value=2.4 Score=38.40 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=32.0
Q ss_pred CHHHHHhcccCCCCCcEEEECCCh---hhHHHHHHHHHHcCCcEEEecC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p---~~~~~~~~~~~~~g~p~ViGTT 57 (219)
+.+++++ .+|+|||-+.. +.-...-+.|.++++|+|.|.+
T Consensus 110 n~~~ll~------~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~ 152 (287)
T PRK08223 110 NADAFLD------GVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAP 152 (287)
T ss_pred CHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec
Confidence 5667775 69999998864 5666677899999999999855
No 47
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=83.66 E-value=3.5 Score=38.08 Aligned_cols=78 Identities=15% Similarity=0.187 Sum_probs=55.6
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhH-HHHHHH---HHHcCCcEEEecCCCChhhHHHHHHHhhc----cCce
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDK----ASMG 77 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~-~~~~~~---~~~~g~p~ViGTTG~~~~~~~~l~~~a~~----~~~~ 77 (219)
.+..++|++++++ .+|+|| |..|... .+.++. .+..+.++|++|=|+.++....+.+..++ ..+.
T Consensus 58 ~l~at~Dl~~a~~------~ad~iv-~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~ 130 (329)
T COG0240 58 NLKATTDLAEALD------GADIIV-IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIA 130 (329)
T ss_pred ccccccCHHHHHh------cCCEEE-EECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEE
Confidence 4567889999996 699777 5556443 444443 45789999999999998776666655432 2367
Q ss_pred EEEccChhHHHHH
Q 027747 78 CLIAPTLSIGSIL 90 (219)
Q Consensus 78 vv~spNfSlGv~l 90 (219)
++--|||+-=+..
T Consensus 131 vLSGPs~A~EVa~ 143 (329)
T COG0240 131 VLSGPSFAKEVAQ 143 (329)
T ss_pred EEECccHHHHHhc
Confidence 7888999876643
No 48
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=83.03 E-value=8.2 Score=34.84 Aligned_cols=83 Identities=13% Similarity=0.169 Sum_probs=56.4
Q ss_pred Ccccc-ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCC----hhhHHHHHHHhhccCceEE
Q 027747 5 LEIPV-MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ----LETVSALSAFCDKASMGCL 79 (219)
Q Consensus 5 ~~~~v-~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~----~~~~~~l~~~a~~~~~~vv 79 (219)
+|++. +++.++++.. .+.|+|++.|.+..-.++...|++.|++++.=|.=+. ....+ +++..+..++.++
T Consensus 47 ~Gi~~~~~~~e~ll~~----~dIDaV~iaTp~~~H~e~a~~al~aGk~VIdekPa~~~plvvp~VN-~~~~~~~~~~~iv 121 (285)
T TIGR03215 47 LGVKTSAEGVDGLLAN----PDIDIVFDATSAKAHARHARLLAELGKIVIDLTPAAIGPYVVPAVN-LDEHLDAPNVNMV 121 (285)
T ss_pred CCCCEEECCHHHHhcC----CCCCEEEECCCcHHHHHHHHHHHHcCCEEEECCccccCCccCCCcC-HHHHhcCcCCCEE
Confidence 56765 4588998863 3689999999999999999999999998876544331 01111 3333333557888
Q ss_pred EccChhHHHHHHHH
Q 027747 80 IAPTLSIGSILLQQ 93 (219)
Q Consensus 80 ~spNfSlGv~ll~~ 93 (219)
-++|-+ .+-++..
T Consensus 122 ~c~~~a-tip~~~a 134 (285)
T TIGR03215 122 TCGGQA-TIPIVAA 134 (285)
T ss_pred EcCcHH-HHHHHHH
Confidence 888877 4444333
No 49
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=83.03 E-value=5.8 Score=36.20 Aligned_cols=101 Identities=15% Similarity=0.118 Sum_probs=64.6
Q ss_pred Ccccc-ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhh-H--HHHHHHhhccCceEEE
Q 027747 5 LEIPV-MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET-V--SALSAFCDKASMGCLI 80 (219)
Q Consensus 5 ~~~~v-~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~-~--~~l~~~a~~~~~~vv~ 80 (219)
+|++. ++++++++... +-.+.|+|+|.|.++.-.++.+.+.+.|+.++.=|.=+.-.- . =.++++....++.++-
T Consensus 50 ~Gi~~~~~~ie~LL~~~-~~~dIDiVf~AT~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~~~~~~~~iia 128 (302)
T PRK08300 50 LGVATSAEGIDGLLAMP-EFDDIDIVFDATSAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEHLDAPNVNMVT 128 (302)
T ss_pred cCCCcccCCHHHHHhCc-CCCCCCEEEECCCHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHHhcccCCCEEE
Confidence 57776 57899999620 012589999999999999999999999998887665440000 0 0112333334578899
Q ss_pred ccChhHHHHHHHHHHHHHhhhcCCeEEEecCC
Q 027747 81 APTLSIGSILLQQAAISASFHYKNVEIVESRP 112 (219)
Q Consensus 81 spNfSlGv~ll~~~~~~aa~~~~dieIiE~Hh 112 (219)
+||=+. ..++..+++ +.+++.-|+..
T Consensus 129 ~p~~at-----i~~v~Al~~-v~~~~~~eIva 154 (302)
T PRK08300 129 CGGQAT-----IPIVAAVSR-VAPVHYAEIVA 154 (302)
T ss_pred CccHHH-----HHHHHHhcc-cCcCceeeeee
Confidence 998653 223333444 44556666653
No 50
>PLN02700 homoserine dehydrogenase family protein
Probab=82.15 E-value=3.6 Score=38.69 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=58.4
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 97 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~ 97 (219)
..+|+||.|.-..+.+..+.++++|+.+|..--+.-....+.+.++++ +++.+.|..|..=|.-++.-+-..
T Consensus 109 ~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~-~~~~~~yEatVgaGlPiI~tl~~l 180 (377)
T PLN02700 109 TGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA-HPRRIRHESTVGAGLPVIASLNRI 180 (377)
T ss_pred CCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-cCCeEEEEeeeeeccchHHHHHHH
Confidence 469999999988888999999999999998877655556667777764 689999999998888777654443
No 51
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=80.49 E-value=2.7 Score=32.81 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=20.2
Q ss_pred CCcEEEECCCh-hhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p-~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|+|||.+.. +.-...-++|.++++|++.+.+
T Consensus 92 ~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~ 125 (135)
T PF00899_consen 92 DYDIVIDCVDSLAARLLLNEICREYGIPFIDAGV 125 (135)
T ss_dssp TSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 57777776643 4444555677777777776654
No 52
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.11 E-value=6 Score=36.88 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=52.8
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH-----cCCcEEEecCCCChhhH--HHHHHHhhc---cC
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-----FGMRSVVYVPHIQLETV--SALSAFCDK---AS 75 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~-----~g~p~ViGTTG~~~~~~--~~l~~~a~~---~~ 75 (219)
.+..++|++++++ .+|+||=-..|..+.+.++.... .+.++|..|-|++.++. ..+.+..++ ..
T Consensus 80 ni~~tsdl~eav~------~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~ 153 (365)
T PTZ00345 80 NIVAVSDLKEAVE------DADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIP 153 (365)
T ss_pred ceEEecCHHHHHh------cCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCC
Confidence 3556889998886 68988866666666677666543 34578889999986553 233333221 34
Q ss_pred ceEEEccChhHHH
Q 027747 76 MGCLIAPTLSIGS 88 (219)
Q Consensus 76 ~~vv~spNfSlGv 88 (219)
+.++.-|||+.-+
T Consensus 154 ~~~LsGPs~A~Ev 166 (365)
T PTZ00345 154 CCALSGANVANDV 166 (365)
T ss_pred eEEEECCCHHHHH
Confidence 6668899999877
No 53
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=80.11 E-value=6 Score=32.29 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=46.2
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhh
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET 63 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~ 63 (219)
+|-+++.+|.++-. +.|+|.=|-.|+.+.+.++.+++.+..+|=.--|...++
T Consensus 59 LG~k~y~sL~dIpe------~IDiVdvFR~~e~~~~i~~eal~~~~kv~W~QlGi~n~e 111 (140)
T COG1832 59 LGEKVYPSLADIPE------PIDIVDVFRRSEAAPEVAREALEKGAKVVWLQLGIRNEE 111 (140)
T ss_pred cCchhhhcHHhCCC------CCcEEEEecChhhhHHHHHHHHhhCCCeEEEecCcCCHH
Confidence 56778888888853 789999999999999999999999999999888977655
No 54
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=80.02 E-value=0.49 Score=32.23 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=27.4
Q ss_pred EEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHH
Q 027747 52 SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 90 (219)
Q Consensus 52 ~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~l 90 (219)
++|+.||+++++.+.|.+++ ...+..++.||+-.+..
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i--~~~Gg~~~~~lt~~~TH 37 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLI--EALGGKYSKDLTKKTTH 37 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHH--HCTT-EEESSSSTT-SE
T ss_pred CEEEECCCCHHHHHHHHHHH--HHCCCEEeccccCCceE
Confidence 58999999999999999999 44677899998765443
No 55
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=79.87 E-value=5.8 Score=35.18 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=43.5
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
.-+.||-++|+++...++.|. |.++|=-.||... ..+.+-.++++++.|+++-++..
T Consensus 70 ~plsIDT~~~~v~eaaL~~~~--G~~iINsIs~~~~-~~~~~~~l~~~~g~~vv~m~~~~ 126 (261)
T PRK07535 70 VPLCIDSPNPAAIEAGLKVAK--GPPLINSVSAEGE-KLEVVLPLVKKYNAPVVALTMDD 126 (261)
T ss_pred CCEEEeCCCHHHHHHHHHhCC--CCCEEEeCCCCCc-cCHHHHHHHHHhCCCEEEEecCC
Confidence 338999999999888877764 9999999999752 23456667777889999866543
No 56
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=79.26 E-value=4.6 Score=29.93 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=39.3
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT 56 (219)
.|+||+++++++.+.+ ++|+.|=|.-++.+.+.+..+++.|+..|+--
T Consensus 46 ~gipV~~~~~~l~~~~----~i~iaii~VP~~~a~~~~~~~~~~gIk~i~nf 93 (96)
T PF02629_consen 46 GGIPVYGSMDELEEFI----EIDIAIITVPAEAAQEVADELVEAGIKGIVNF 93 (96)
T ss_dssp TTEEEESSHHHHHHHC----TTSEEEEES-HHHHHHHHHHHHHTT-SEEEEE
T ss_pred CCEEeeccHHHhhhhh----CCCEEEEEcCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4789999999998753 38999989988999999999999999888753
No 57
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=79.14 E-value=4.9 Score=41.37 Aligned_cols=66 Identities=14% Similarity=0.093 Sum_probs=56.4
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCC---ChhhHHHHHHHhhccCceEEEccChhHHHHHHH
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMGCLIAPTLSIGSILLQ 92 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~---~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~ 92 (219)
+|+||.|.-+-.......|+++|+++|..--.. ..+..++|.++++++++.+.|-++..=|+-++.
T Consensus 543 ~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii~ 611 (810)
T PRK09466 543 LVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPINH 611 (810)
T ss_pred cEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChHH
Confidence 599999988877778889999999999887743 236788999999999999999999998888843
No 58
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=78.76 E-value=13 Score=34.26 Aligned_cols=69 Identities=12% Similarity=0.005 Sum_probs=47.4
Q ss_pred cEEEECC-----ChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhh
Q 027747 27 AVVIDFT-----DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH 101 (219)
Q Consensus 27 DVvIDFS-----~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~ 101 (219)
=++||-| .|+++...++.|.. +.|++-+.| .+.++.+-.+|.+++.+++..+ +..++++.++...+.++
T Consensus 126 PL~Id~s~n~~kD~evleaale~~~g-~~pLInSat---~en~~~i~~lA~~y~~~Vva~s--~~Dln~ak~L~~~l~~~ 199 (319)
T PRK04452 126 PLIIGGSGNPEKDAEVLEKVAEAAEG-ERCLLGSAE---EDNYKKIAAAAMAYGHAVIAWS--PLDINLAKQLNILLTEL 199 (319)
T ss_pred CEEEecCCCCCCCHHHHHHHHHHhCC-CCCEEEECC---HHHHHHHHHHHHHhCCeEEEEc--HHHHHHHHHHHHHHHHc
Confidence 3568877 67777776666543 356776666 5567777788888888877765 45577777777777654
No 59
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=78.57 E-value=4 Score=37.12 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=43.7
Q ss_pred cCHHHHHhcccCCCCCc--EEEECCChhh----------------------------HHHHHHHHHHcCCcEEEecCCCC
Q 027747 11 SDLTMVLGSISQSKARA--VVIDFTDAST----------------------------VYDNVKQATAFGMRSVVYVPHIQ 60 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~D--VvIDFS~p~~----------------------------~~~~~~~~~~~g~p~ViGTTG~~ 60 (219)
.|+.+.+++ .+.| |||.+.+-+. +.-....|++.|+|+|=||.=+.
T Consensus 136 ~DI~~f~~~----~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~~~aS~~YA~AAl~~g~~fvN~tP~~~ 211 (295)
T PF07994_consen 136 EDIRDFKKE----NGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPEISASMLYAYAALEAGVPFVNGTPSNI 211 (295)
T ss_dssp HHHHHHHHH----TT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TTHHHHHHHHHHHHHTTEEEEE-SSSTT
T ss_pred HHHHHHHHH----hCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCcCChHHHHHHHHHHCCCCeEeccCccc
Confidence 455566654 4789 9998877655 33455678889999999998666
Q ss_pred hhhHHHHHHHhhccCceEE
Q 027747 61 LETVSALSAFCDKASMGCL 79 (219)
Q Consensus 61 ~~~~~~l~~~a~~~~~~vv 79 (219)
.+ ...+.++++++++|++
T Consensus 212 a~-~P~l~ela~~~gvpi~ 229 (295)
T PF07994_consen 212 AD-DPALVELAEEKGVPIA 229 (295)
T ss_dssp TT-SHHHHHHHHHHTEEEE
T ss_pred cC-CHHHHHHHHHcCCCee
Confidence 42 3678888888888865
No 60
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.56 E-value=17 Score=30.87 Aligned_cols=75 Identities=9% Similarity=-0.001 Sum_probs=49.3
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH--cCCcEEEecCCCChhhHHHHHHHhhccCceE-EEc
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGC-LIA 81 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~--~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v-v~s 81 (219)
+++.++.+++++++ .+|+||=-+.|....+.++.... .+..+|..+-|++.+. |++... .+.++ ..-
T Consensus 52 ~~~~~~~~~~~~~~------~~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~---l~~~~~-~~~~v~r~~ 121 (245)
T PRK07634 52 YNVSTTTDWKQHVT------SVDTIVLAMPPSAHEELLAELSPLLSNQLVVTVAAGIGPSY---LEERLP-KGTPVAWIM 121 (245)
T ss_pred cCcEEeCChHHHHh------cCCEEEEecCHHHHHHHHHHHHhhccCCEEEEECCCCCHHH---HHHHcC-CCCeEEEEC
Confidence 45667778888875 68999988888888777766543 2556777777898765 554432 12233 344
Q ss_pred cChhHHHH
Q 027747 82 PTLSIGSI 89 (219)
Q Consensus 82 pNfSlGv~ 89 (219)
||+..-+.
T Consensus 122 Pn~a~~v~ 129 (245)
T PRK07634 122 PNTAAEIG 129 (245)
T ss_pred CcHHHHHh
Confidence 88775443
No 61
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.46 E-value=11 Score=32.76 Aligned_cols=39 Identities=10% Similarity=0.059 Sum_probs=28.4
Q ss_pred CHHHHHhcccCCCCCcEEEECC-ChhhHHHHHHHHHHcCCcEEEe
Q 027747 12 DLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViG 55 (219)
++++.+. ..+|+|||-. +++.-....++|.++++|+|..
T Consensus 94 ~~~~l~~-----~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s 133 (231)
T cd00755 94 NSEDLLG-----GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISS 133 (231)
T ss_pred HHHHHhc-----CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 4455553 2589999974 4566667789999999999963
No 62
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=78.34 E-value=8 Score=33.90 Aligned_cols=56 Identities=7% Similarity=0.036 Sum_probs=41.8
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 86 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSl 86 (219)
+.-+.||-++|+++.+.+ +.|.++|=-.||++.+ +.+-+++.+++.|+|+-++=..
T Consensus 76 ~~piSIDT~~~~v~~aaL----~~g~~iINdis~~~~~--~~~~~l~~~~~~~vV~m~~~~~ 131 (258)
T cd00423 76 DVPISVDTFNAEVAEAAL----KAGADIINDVSGGRGD--PEMAPLAAEYGAPVVLMHMDGT 131 (258)
T ss_pred CCeEEEeCCcHHHHHHHH----HhCCCEEEeCCCCCCC--hHHHHHHHHcCCCEEEECcCCC
Confidence 344899999999866555 4569999999999643 3556677778899999875443
No 63
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=77.18 E-value=4.1 Score=35.54 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=25.0
Q ss_pred CCcEEEECCChhhHHH-HHHHHHHcCCcEEEecC-CC
Q 027747 25 ARAVVIDFTDASTVYD-NVKQATAFGMRSVVYVP-HI 59 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~-~~~~~~~~g~p~ViGTT-G~ 59 (219)
.+|+|||-+....+.. .-++|.++++|+|.|.. ||
T Consensus 114 ~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~ 150 (240)
T TIGR02355 114 EHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRM 150 (240)
T ss_pred cCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence 6888888876554444 44788888999988754 44
No 64
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=76.97 E-value=15 Score=32.32 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=46.1
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCCh-hhHHHHH---HHHH---HcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDA-STVYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p-~~~~~~~---~~~~---~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+.+.+++.+++. .+|+||=.-.+ +.+.+.+ +... ..| .+||=+|+.+++...++.+.++++++..
T Consensus 39 g~~~~~s~~~~~~------~advVil~vp~~~~~~~v~~g~~~l~~~~~~g-~~vid~st~~p~~~~~~~~~~~~~g~~~ 111 (288)
T TIGR01692 39 GAQAAASPAEAAE------GADRVITMLPAGQHVISVYSGDEGILPKVAKG-SLLIDCSTIDPDSARKLAELAAAHGAVF 111 (288)
T ss_pred CCeecCCHHHHHh------cCCEEEEeCCChHHHHHHHcCcchHhhcCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCcE
Confidence 5556778888875 68977754443 4455544 2222 333 3566666788888888988887788877
Q ss_pred EEcc
Q 027747 79 LIAP 82 (219)
Q Consensus 79 v~sp 82 (219)
+=+|
T Consensus 112 vdaP 115 (288)
T TIGR01692 112 MDAP 115 (288)
T ss_pred EECC
Confidence 7776
No 65
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=76.87 E-value=10 Score=34.73 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhh
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH 101 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~ 101 (219)
++.-.+.++...+.+.|.+|=|-|+.... .|.+.|+++++|++.++.-| ..++..+...+.+.
T Consensus 68 ~~~r~~~~~~l~~~~~P~iIvt~~~~~p~--~l~~~a~~~~ipll~t~~~t--~~~i~~l~~~L~~~ 130 (308)
T PRK05428 68 EEERKERLKKLFSLEPPCIIVTRGLEPPP--ELLEAAKEAGIPLLRTPLST--TRLISKLTNYLDRK 130 (308)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCCH--HHHHHHHHcCCcEEEeCCcH--HHHHHHHHHHHHHH
Confidence 45567888999999999999999998864 68899999999999998855 34444444444443
No 66
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=76.81 E-value=4.7 Score=36.03 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=48.2
Q ss_pred HHHHHhcccCCCCCcEEEECCChhh---HHHHHHHHHHcCCcEEEe-cCCCCh--------hhHHHHHHHhhccCceEEE
Q 027747 13 LTMVLGSISQSKARAVVIDFTDAST---VYDNVKQATAFGMRSVVY-VPHIQL--------ETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~p~~---~~~~~~~~~~~g~p~ViG-TTG~~~--------~~~~~l~~~a~~~~~~vv~ 80 (219)
|-+.|.+ ...|.+||-|||-+ +...++.|.+.|+|.+-= =.+|.. +++++.-+++.+.+-.|+.
T Consensus 58 l~~~l~e----~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~gd~~~~V~d~~ea~~~~~~~~~rVfl 133 (257)
T COG2099 58 LAAFLRE----EGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPNGDNWIEVADIEEAAEAAKQLGRRVFL 133 (257)
T ss_pred HHHHHHH----cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccCCCceEEecCHHHHHHHHhccCCcEEE
Confidence 3445543 57999999999955 477889999999998863 233433 3344444444444444554
Q ss_pred ccChhHHHHHHHHHHHHH
Q 027747 81 APTLSIGSILLQQAAISA 98 (219)
Q Consensus 81 spNfSlGv~ll~~~~~~a 98 (219)
.+|.+-+..|.+..
T Consensus 134 ----t~G~~~l~~f~~~~ 147 (257)
T COG2099 134 ----TTGRQNLAHFVAAD 147 (257)
T ss_pred ----ecCccchHHHhcCc
Confidence 35666655555443
No 67
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=76.58 E-value=15 Score=33.79 Aligned_cols=85 Identities=14% Similarity=0.006 Sum_probs=55.6
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCC-hhhHHHHHHHhhccCceEEEccC
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQ-LETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~-~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++..+.+.++.+. ++|||+=.+-...-.+.+..+++.|+++|.--. ..+ ++..+.|.++|++.+.-.+++.=
T Consensus 47 ~v~~~~d~~e~l~------~iDVViIctPs~th~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~G 120 (324)
T TIGR01921 47 PVYAVADDEKHLD------DVDVLILCMGSATDIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTG 120 (324)
T ss_pred CccccCCHHHhcc------CCCEEEEcCCCccCHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECC
Confidence 4444456666653 699888777555557888888999999998632 111 25578899999875556666655
Q ss_pred hhHHHHHHHHHHH
Q 027747 84 LSIGSILLQQAAI 96 (219)
Q Consensus 84 fSlGv~ll~~~~~ 96 (219)
.--|..-+.++..
T Consensus 121 wDPG~~si~r~~~ 133 (324)
T TIGR01921 121 WDPGMFSINRVYG 133 (324)
T ss_pred CCcChHHHHHHHH
Confidence 5555555555433
No 68
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=76.47 E-value=3.1 Score=31.19 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=42.4
Q ss_pred HHHHHhcccCCCCCcEEEE-CCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHH
Q 027747 13 LTMVLGSISQSKARAVVID-FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 88 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvID-FS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv 88 (219)
++.++... .+-|.||= ..+ .+.+..|++.+++.||=|-|..+++ .+.+++++.++|++.+|.=+.-+
T Consensus 31 ~~~~~~~~---~~~~lvIt~gdR----~di~~~a~~~~i~~iIltg~~~~~~--~v~~la~~~~i~vi~t~~dtf~t 98 (105)
T PF07085_consen 31 LSDFLEYL---KPGDLVITPGDR----EDIQLAAIEAGIACIILTGGLEPSE--EVLELAKELGIPVISTPYDTFET 98 (105)
T ss_dssp HHHHHHCH---HTTEEEEEETT-----HHHHHHHCCTTECEEEEETT----H--HHHHHHHHHT-EEEE-SS-HHHH
T ss_pred HHHHHhhc---CCCeEEEEeCCc----HHHHHHHHHhCCCEEEEeCCCCCCH--HHHHHHHHCCCEEEEECCCHHHH
Confidence 56666532 13455553 665 4567788899999999999988864 78888888999999998655544
No 69
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=76.27 E-value=4.1 Score=36.12 Aligned_cols=40 Identities=15% Similarity=0.262 Sum_probs=30.1
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhh---HHHHHHHHHHcCCcEEEe
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDAST---VYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~---~~~~~~~~~~~g~p~ViG 55 (219)
++.+.+.+ .++|+|||.|||-+ .....+.|.+.|+|.+=-
T Consensus 56 ~l~~~l~~----~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 56 ELREFLKR----HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHh----cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 34445542 46999999999955 466778899999998864
No 70
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=76.12 E-value=3.8 Score=36.17 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=29.9
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhh---HHHHHHHHHHcCCcEEE
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDAST---VYDNVKQATAFGMRSVV 54 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~---~~~~~~~~~~~g~p~Vi 54 (219)
.+.+.+.+ .+.|.|||-|||-+ .....+.|.+.|+|.+=
T Consensus 57 ~l~~~l~~----~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR 98 (249)
T PF02571_consen 57 GLAEFLRE----NGIDAVIDATHPFAAEISQNAIEACRELGIPYLR 98 (249)
T ss_pred HHHHHHHh----CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEE
Confidence 45566653 57999999999944 46667889999999874
No 71
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=75.71 E-value=4.3 Score=35.87 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=30.8
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhh---HHHHHHHHHHcCCcEEEe
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDAST---VYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~---~~~~~~~~~~~g~p~ViG 55 (219)
++.+.+.+ .+.+.|||-|||-+ .....+.|.+.|+|.+==
T Consensus 56 ~l~~~l~~----~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 56 GLAAYLRE----EGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred HHHHHHHH----CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 55666653 57999999999944 466778899999998853
No 72
>PRK08328 hypothetical protein; Provisional
Probab=75.54 E-value=5.8 Score=34.29 Aligned_cols=33 Identities=24% Similarity=0.107 Sum_probs=22.2
Q ss_pred CCcEEEECCC-hhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~-p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
++|+|||-+. ++.-...-++|.++++|+|.|.+
T Consensus 118 ~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~ 151 (231)
T PRK08328 118 GVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAV 151 (231)
T ss_pred cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 5788888764 34333344678888888888655
No 73
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=75.35 E-value=6.4 Score=33.23 Aligned_cols=33 Identities=6% Similarity=-0.059 Sum_probs=17.0
Q ss_pred CCcEEEECCChhhH-HHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p~~~-~~~~~~~~~~g~p~ViGTT 57 (219)
.+|+|||-+.+... ...-++|.++++|+|.+.+
T Consensus 113 ~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~ 146 (198)
T cd01485 113 KFTLVIATEENYERTAKVNDVCRKHHIPFISCAT 146 (198)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 45666655543322 3334556666666665544
No 74
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=74.89 E-value=12 Score=33.61 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=30.5
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhH-HHHHHHHHHcCCcEEEe
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY 55 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~-~~~~~~~~~~g~p~ViG 55 (219)
.++++++. .++|-|||-..-=.. .+++.+|.++++|+|..
T Consensus 112 en~~~~~~-----~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss 152 (263)
T COG1179 112 ENLEDLLS-----KGFDYVIDAIDSVRAKVALIAYCRRNKIPVISS 152 (263)
T ss_pred hHHHHHhc-----CCCCEEEEchhhhHHHHHHHHHHHHcCCCEEee
Confidence 36777776 379999998765333 56778999999998863
No 75
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=74.88 E-value=12 Score=35.94 Aligned_cols=69 Identities=4% Similarity=-0.029 Sum_probs=49.4
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhh
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH 101 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~ 101 (219)
.-+.||-.+|+++...++.+. .++|+|.+-| .+.++.+-+++.+++.|+++.++= .+.+.++++.+.+.
T Consensus 156 vPLSIDT~dpevleaAleaga-d~~plI~Sat---~dN~~~m~~la~~yg~pvVv~~~d---l~~L~~lv~~~~~~ 224 (450)
T PRK04165 156 LPLILCSEDPAVLKAALEVVA-DRKPLLYAAT---KENYEEMAELAKEYNCPLVVKAPN---LEELKELVEKLQAA 224 (450)
T ss_pred CCEEEeCCCHHHHHHHHHhcC-CCCceEEecC---cchHHHHHHHHHHcCCcEEEEchh---HHHHHHHHHHHHHc
Confidence 348999989988887776643 3578888866 355667777777788888887752 66666776666554
No 76
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=74.77 E-value=13 Score=34.11 Aligned_cols=75 Identities=8% Similarity=-0.059 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHH--HHHHHHHHHhhhc-CCeEEEecCC
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI--LLQQAAISASFHY-KNVEIVESRP 112 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~--ll~~~~~~aa~~~-~dieIiE~Hh 112 (219)
+.-.+.++...+.+.|.+|=|-|+.+. +.|.++|+++++|++.++-.+-... +.+.+-+.++... .+-..++.+-
T Consensus 69 e~~~~~~~~~~~~~~P~iIvt~~~~~p--~~l~~~a~~~~ip~l~t~~~~~~~~~~l~~~L~~~la~~~~~hg~~v~i~g 146 (304)
T TIGR00679 69 EEQKQIIHNLLTLNPPAIILSKSFTDP--TVLLQVNETYQVPILKTDLFSTELSFRLETYLNEQFAPTAAIHGVLVEVYG 146 (304)
T ss_pred HHHHHHHHHHhCCCCCEEEEECcCCCC--HHHHHHHHHhCCcEEEeCCcHHHHHHHHHHHHHHhhccceeeeeEEEEECC
Confidence 445668889999999999999999886 5788999999999999988774432 2233344444432 2333445443
No 77
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=74.76 E-value=8.7 Score=33.90 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=46.4
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhc-----cCce
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDK-----ASMG 77 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~-----~~~~ 77 (219)
++...+++++++. .+|+||=.+.+..+.+.++.... .+..+|.-+.|++.+....+.+..++ ....
T Consensus 58 ~~~~~~~~~~~~~------~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~ 131 (325)
T PRK00094 58 NLRATTDLAEALA------DADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIA 131 (325)
T ss_pred CeEEeCCHHHHHh------CCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceE
Confidence 4556678877765 68999988888777776665544 34455656558887543333333222 2456
Q ss_pred EEEccChh
Q 027747 78 CLIAPTLS 85 (219)
Q Consensus 78 vv~spNfS 85 (219)
++..||+.
T Consensus 132 ~~~~P~~~ 139 (325)
T PRK00094 132 VLSGPSFA 139 (325)
T ss_pred EEECccHH
Confidence 77788864
No 78
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=74.53 E-value=10 Score=35.35 Aligned_cols=78 Identities=13% Similarity=0.135 Sum_probs=53.1
Q ss_pred CHHHHHhcccCCCCCcEEEECCCh----hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh-h-
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDA----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL-S- 85 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p----~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf-S- 85 (219)
|.-+.|.+ .++||+|.|= | +++.-.+..|++.|+|+|=||.=+... ...+.+.++++++|++ ---+ |
T Consensus 114 dv~~~lk~----~~~dVlvnyl-PvGs~~A~~~YA~AAl~aG~afVN~~P~~ia~-~p~~a~~f~e~glPi~-GDD~Ksq 186 (351)
T TIGR03450 114 DVVQALKD----AKVDVLVSYL-PVGSEEADKFYAQCAIDAGVAFVNALPVFIAS-DPEWAKKFTDAGVPIV-GDDIKSQ 186 (351)
T ss_pred HHHHHHHh----cCCCEEEECC-ccchHHHHHHHHHHHHHcCCceEeccCccccC-CHHHHHHHHHCCCCEe-ccccccc
Confidence 34445553 4799999984 4 455556667778999999999866553 3567777778888854 2232 4
Q ss_pred HHHHHHHHHHH
Q 027747 86 IGSILLQQAAI 96 (219)
Q Consensus 86 lGv~ll~~~~~ 96 (219)
+|..++.+.+.
T Consensus 187 ~GaTi~h~vLa 197 (351)
T TIGR03450 187 VGATITHRVLA 197 (351)
T ss_pred CCCchHHHHHH
Confidence 68888866443
No 79
>PRK14851 hypothetical protein; Provisional
Probab=74.46 E-value=6 Score=39.94 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=29.8
Q ss_pred CHHHHHhcccCCCCCcEEEECCChh---hHHHHHHHHHHcCCcEEEec
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDAS---TVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~---~~~~~~~~~~~~g~p~ViGT 56 (219)
++++.++ .+|+|||-+... .-....+.|.++++|+|.|+
T Consensus 126 n~~~~l~------~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 126 NMDAFLD------GVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred HHHHHHh------CCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 5566775 699999998742 22356678999999999886
No 80
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=73.93 E-value=3.4 Score=32.58 Aligned_cols=50 Identities=8% Similarity=0.157 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhH
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 86 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSl 86 (219)
++.-.+.++...+.+.|.||=|-|+... +.|.++|+++++|++.++--|-
T Consensus 67 ~~~r~~~l~~l~~~~~P~iIvt~~~~~p--~~l~e~a~~~~ipll~t~~~ts 116 (127)
T PF02603_consen 67 EEERKERLEKLFSYNPPCIIVTRGLEPP--PELIELAEKYNIPLLRTPLSTS 116 (127)
T ss_dssp HHHHCCHHHHHCTTT-S-EEEETTT-----HHHHHHHHHCT--EEEESS-HH
T ss_pred HHHHHHHHHHHhCCCCCEEEEECcCCCC--HHHHHHHHHhCCcEEEcCCcHH
Confidence 4445578888999999999999999765 5788999999999999987553
No 81
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=73.35 E-value=5.8 Score=29.74 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=22.9
Q ss_pred HHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc
Q 027747 64 VSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY 102 (219)
Q Consensus 64 ~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~ 102 (219)
.++|.++|+ ..++++--|-.+...++.++.+.+.++|
T Consensus 17 ~~~l~~A~~--~~GFf~l~nhGi~~~l~~~~~~~~~~fF 53 (116)
T PF14226_consen 17 AEQLRDACE--EWGFFYLVNHGIPQELIDRVFAAAREFF 53 (116)
T ss_dssp HHHHHHHHH--HTSEEEEESSSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCEEEEecccccchhhHHHHHHHHHHH
Confidence 355666663 3566666777666666666666665554
No 82
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.25 E-value=10 Score=28.13 Aligned_cols=37 Identities=5% Similarity=0.047 Sum_probs=17.6
Q ss_pred cEEEecCCCChhh-HHHHHHHhhccCceEEEccChhHH
Q 027747 51 RSVVYVPHIQLET-VSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 51 p~ViGTTG~~~~~-~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
-+||--|++-... ...+++.|++.++|++++.+.|+.
T Consensus 50 D~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 50 DLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred CEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 4444444443322 334455555555555555555544
No 83
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=73.12 E-value=15 Score=36.02 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHcCCcEEEecCCCC---hhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHH
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHIQ---LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI 96 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~~---~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~ 96 (219)
.+..+++-..++|+|+|+.-.=|. +++++.++++|++.+++++++.-|+-|-.=-..+++
T Consensus 344 NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~ 406 (524)
T cd00477 344 NLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAE 406 (524)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHH
Confidence 455667777889999999988774 466788899999999999999999998665544443
No 84
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=72.87 E-value=6.9 Score=36.58 Aligned_cols=33 Identities=21% Similarity=0.041 Sum_probs=25.3
Q ss_pred CCcEEEECCChhhH-HHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p~~~-~~~~~~~~~~g~p~ViGTT 57 (219)
.+|+|||.+.-... ...-++|.++++|+|.|.+
T Consensus 132 ~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~ 165 (392)
T PRK07878 132 QYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI 165 (392)
T ss_pred cCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 69999999744444 4455889999999999644
No 85
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=72.71 E-value=8.5 Score=35.65 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=56.6
Q ss_pred CCCcEEEECCCh--hhHH--HHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHH
Q 027747 24 KARAVVIDFTDA--STVY--DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI 96 (219)
Q Consensus 24 ~~~DVvIDFS~p--~~~~--~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~ 96 (219)
...||+|+-+-. +... +.++.++++|+++|.-==+.-.....+|.++|+++++.+.|=++-.=|+-++.-+-.
T Consensus 77 ~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~lr~ 153 (333)
T COG0460 77 EDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKLLRE 153 (333)
T ss_pred ccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHHHHh
Confidence 468899887655 3344 899999999999998766766677889999999999988888777777766544433
No 86
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.45 E-value=15 Score=34.21 Aligned_cols=97 Identities=12% Similarity=0.048 Sum_probs=65.5
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhH-HHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEc--c
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIA--P 82 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~-~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~s--p 82 (219)
.+++++.|+++++ ..+|||. ++.|... .+.+..|+++|+++.+=.. ..+.+|.++|-++|+++++=+..+ +
T Consensus 58 ~k~y~syEeLakd----~~vDvVy-i~~~~~qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~ 132 (351)
T KOG2741|consen 58 PKAYGSYEELAKD----PEVDVVY-ISTPNPQHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWW 132 (351)
T ss_pred CccccCHHHHhcC----CCcCEEE-eCCCCccHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeee
Confidence 4789999999974 4578755 5655444 7788999999999666443 677899999999998776433221 2
Q ss_pred ChhHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 83 TLSIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 83 NfSlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
=|+--+..+..++. .+.|=|+.-++.
T Consensus 133 R~~P~~~~lke~l~--~~~~Gdvk~v~~ 158 (351)
T KOG2741|consen 133 RFFPRYAKLKELLS--SGVLGDVKSVEV 158 (351)
T ss_pred ecCcHHHHHHHHHh--ccccccceEEEE
Confidence 33444445555555 555656666665
No 87
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=72.39 E-value=14 Score=32.89 Aligned_cols=64 Identities=8% Similarity=0.012 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHH-Hhhc--cCceEEEccChhHHHHHHHHHHHHHhh
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSA-FCDK--ASMGCLIAPTLSIGSILLQQAAISASF 100 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~-~a~~--~~~~vv~spNfSlGv~ll~~~~~~aa~ 100 (219)
.+.+..+++++++.|+. +|.|||| ++.++..++-+ .++. .++||+.....+ ..-..++++.+.+
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~--t~~~i~~a~~a~~ 92 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYG--TATAIAYAQAAEK 92 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCC--HHHHHHHHHHHHH
Confidence 45677778888888765 3567877 55555544432 2221 357777655533 3333444454444
No 88
>PRK07877 hypothetical protein; Provisional
Probab=71.47 E-value=6.3 Score=40.11 Aligned_cols=40 Identities=18% Similarity=0.154 Sum_probs=31.8
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHH-HHHHHcCCcEEEecC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNV-KQATAFGMRSVVYVP 57 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~-~~~~~~g~p~ViGTT 57 (219)
+++++++ .+|+|||-+.--.+.-.+ +.|.++|+|+|.|+.
T Consensus 189 n~~~~l~------~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 189 NVDAFLD------GLDVVVEECDSLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred HHHHHhc------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 5777775 699999998765554444 889999999999984
No 89
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=71.37 E-value=9.6 Score=31.47 Aligned_cols=31 Identities=10% Similarity=-0.031 Sum_probs=18.3
Q ss_pred CCcEEEECCChhhH-HHHHHHHHHc-CCcEEEe
Q 027747 25 ARAVVIDFTDASTV-YDNVKQATAF-GMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS~p~~~-~~~~~~~~~~-g~p~ViG 55 (219)
.+|+|||-+.-..+ ....+.|.+. ++|+|.|
T Consensus 88 ~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 88 DCDIVVEAFDNAETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 57777776433333 3355666666 7777765
No 90
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=71.36 E-value=8.8 Score=32.89 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=17.0
Q ss_pred CcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 50 MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 50 ~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
..+|+.++. +.+....|.++|.+.++|++.+...
T Consensus 112 ~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~g~~ 145 (228)
T cd00757 112 YDLVLDCTD-NFATRYLINDACVKLGKPLVSGAVL 145 (228)
T ss_pred CCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEec
Confidence 455555554 2233344555555555555555443
No 91
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=71.15 E-value=25 Score=32.45 Aligned_cols=91 Identities=19% Similarity=0.279 Sum_probs=57.9
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCcEEE--------------------ecCCCCh-----hhHHHHHHH-hhccCce
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMRSVV--------------------YVPHIQL-----ETVSALSAF-CDKASMG 77 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p~Vi--------------------GTTG~~~-----~~~~~l~~~-a~~~~~~ 77 (219)
+++||+|=-+.|.+ ..+..+.+. +|+|+ .-||+++ ++++.+++. =.-++++
T Consensus 87 ~~~dviv~i~tp~A--q~~~s~~~~-iPVV~aavtd~v~a~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Ig 163 (322)
T COG2984 87 DKPDVIVAIATPAA--QALVSATKT-IPVVFAAVTDPVGAKLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLPNAKSIG 163 (322)
T ss_pred CCCcEEEecCCHHH--HHHHHhcCC-CCEEEEccCchhhccCCccccCCCCceeecCCcchHHHHHHHHHHhCCCCeeEE
Confidence 46898888888865 223333333 77765 3367765 334445544 1226789
Q ss_pred EEEccChhHHHHHHHHHHHHHhhhcCCeEEEecCC-CCCCCCc
Q 027747 78 CLIAPTLSIGSILLQQAAISASFHYKNVEIVESRP-NARDFPS 119 (219)
Q Consensus 78 vv~spNfSlGv~ll~~~~~~aa~~~~dieIiE~Hh-~K~DaPS 119 (219)
++|+|+..--+.++.++-+.|.+ ..++++|.-- +=.|.|+
T Consensus 164 v~Y~p~E~ns~~l~eelk~~A~~--~Gl~vve~~v~~~ndi~~ 204 (322)
T COG2984 164 VLYNPGEANSVSLVEELKKEARK--AGLEVVEAAVTSVNDIPR 204 (322)
T ss_pred EEeCCCCcccHHHHHHHHHHHHH--CCCEEEEEecCcccccHH
Confidence 99999997777777776666654 4778888744 3455553
No 92
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.94 E-value=13 Score=27.64 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCcEE---EECCChhhHHHHHHHHHHcCCcEEEec-CCCCh
Q 027747 25 ARAVV---IDFTDASTVYDNVKQATAFGMRSVVYV-PHIQL 61 (219)
Q Consensus 25 ~~DVv---IDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~ 61 (219)
.+|+| .||-+..+....-+.|.++++|++.-- +|++.
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~ 88 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSS 88 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHH
Confidence 68965 466677888999999999999999988 78864
No 93
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=70.91 E-value=8.2 Score=35.63 Aligned_cols=32 Identities=19% Similarity=0.105 Sum_probs=24.8
Q ss_pred CCcEEEECCChhhHH-HHHHHHHHcCCcEEEec
Q 027747 25 ARAVVIDFTDASTVY-DNVKQATAFGMRSVVYV 56 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~-~~~~~~~~~g~p~ViGT 56 (219)
++|+|||-+.--... -.-+.|.++++|+|.|-
T Consensus 118 ~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 118 DADVILDGSDNFDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 699999998544443 45588999999999864
No 94
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=70.81 E-value=6.8 Score=34.21 Aligned_cols=33 Identities=18% Similarity=0.089 Sum_probs=22.5
Q ss_pred CCcEEEECCChhhHHH-HHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDASTVYD-NVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~-~~~~~~~~g~p~ViGTT 57 (219)
.+|+|||-+....+.. .-++|.++++|+|.|.+
T Consensus 122 ~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~ 155 (245)
T PRK05690 122 GHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAA 155 (245)
T ss_pred cCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeee
Confidence 5788888776544444 44677788888887655
No 95
>PRK07411 hypothetical protein; Validated
Probab=70.66 E-value=7.6 Score=36.34 Aligned_cols=36 Identities=19% Similarity=0.060 Sum_probs=27.9
Q ss_pred CCcEEEECCChhhHHHHH-HHHHHcCCcEEEecC-CCC
Q 027747 25 ARAVVIDFTDASTVYDNV-KQATAFGMRSVVYVP-HIQ 60 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~-~~~~~~g~p~ViGTT-G~~ 60 (219)
.+|+|||.+..-.+...+ +.|.+.++|+|.|.+ ||.
T Consensus 128 ~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~ 165 (390)
T PRK07411 128 PYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFE 165 (390)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCE
Confidence 699999998766555444 888999999998754 553
No 96
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=70.61 E-value=10 Score=29.69 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=33.9
Q ss_pred EEEECCChhhHHHHHHHHHHcCC------cEEEecC--CCChhhHHHHHHHhhccCce
Q 027747 28 VVIDFTDASTVYDNVKQATAFGM------RSVVYVP--HIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~------p~ViGTT--G~~~~~~~~l~~~a~~~~~~ 77 (219)
|.+|=+ ...+-++.|++.+. ..|+.|| |++++|++.|+++..+.+++
T Consensus 51 v~~d~~---~~~~r~k~~l~~~~~~~l~g~~i~~~~~EGLs~E~IE~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 51 VYRDRS---SFFKRFKFALKTEDGSALTGEKIISTDAEGLSKEDIEKLKKLVEEGKIE 105 (110)
T ss_pred EEEecc---cHHHHHHHHHHhcccccccCCeEEeccccCCCHHHHHHHHHHHHcCCCc
Confidence 555543 35666677766533 5678888 69999999999998776654
No 97
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=70.55 E-value=11 Score=31.72 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=20.0
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEEecC-CCC
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP-HIQ 60 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGTT-G~~ 60 (219)
.+|+|||-+ +++.....-++|.++++|+|.+-+ ||.
T Consensus 110 ~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~ 147 (197)
T cd01492 110 QFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLF 147 (197)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCE
Confidence 466666654 333334444666667777666444 443
No 98
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=70.23 E-value=16 Score=32.28 Aligned_cols=53 Identities=9% Similarity=0.021 Sum_probs=41.0
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+.-+.||-++|+++...++ .|.++|=-.+|+..+ +.+-.++++++.++|+.++
T Consensus 76 ~~plSIDT~~~~v~e~al~----~G~~iINdisg~~~~--~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 76 DVLISVDTFRAEVARAALE----AGADIINDVSGGSDD--PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred CCcEEEeCCCHHHHHHHHH----hCCCEEEeCCCCCCC--hHHHHHHHHcCCCEEEECC
Confidence 3449999999998766554 589999999999743 4566677778899999765
No 99
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=70.10 E-value=9.5 Score=32.19 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=8.3
Q ss_pred HHHHHhhccCceEEEccC
Q 027747 66 ALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 66 ~l~~~a~~~~~~vv~spN 83 (219)
.|.+++.+.++|++.+.+
T Consensus 127 ~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 127 LINDACVALGTPLISAAV 144 (202)
T ss_pred HHHHHHHHcCCCEEEEEe
Confidence 344444444444444443
No 100
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=70.03 E-value=10 Score=37.50 Aligned_cols=55 Identities=15% Similarity=0.286 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHcCCcEEEecCCCCh---hhHHHHHHHhhccCceEEEccChhHHHHHH
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMGCLIAPTLSIGSILL 91 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~~~---~~~~~l~~~a~~~~~~vv~spNfSlGv~ll 91 (219)
-+..+++-+.++|+|+|++--=|+. ++.+.|+++|++.+++++++.-|+.|-.=-
T Consensus 360 NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Ga 417 (557)
T PRK13505 360 NLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVEVALSEVWAKGGEGG 417 (557)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCcch
Confidence 3456778888999999999988764 367889999999999999999999875443
No 101
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=69.98 E-value=9.5 Score=33.34 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHcCCcEE--EecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 36 STVYDNVKQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~V--iGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+...+.++.+++.|...+ =||+|.+.++.+.+-+..++..+|+++=
T Consensus 14 ~~~~~~~~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilf 61 (223)
T TIGR01768 14 SEADEIAKAAAESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILF 61 (223)
T ss_pred cccHHHHHHHHhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEe
Confidence 334568888888877654 4999999998887767767788999953
No 102
>PRK14852 hypothetical protein; Provisional
Probab=69.38 E-value=8.7 Score=40.45 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=30.7
Q ss_pred CHHHHHhcccCCCCCcEEEECCCh---hhHHHHHHHHHHcCCcEEEecC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p---~~~~~~~~~~~~~g~p~ViGTT 57 (219)
++++.++ ++|+|||-+.- +.-......|.++|+|+|.|+.
T Consensus 415 n~~~fl~------~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 415 TIDAFLK------DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred HHHHHhh------CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 5666765 79999996653 3335667789999999999887
No 103
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=69.26 E-value=25 Score=30.85 Aligned_cols=115 Identities=12% Similarity=0.161 Sum_probs=75.8
Q ss_pred cCHHHHHhcccCCCCCcEEEEC-CChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhH---
Q 027747 11 SDLTMVLGSISQSKARAVVIDF-TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI--- 86 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDF-S~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSl--- 86 (219)
++.++.|... ..+|++|=+ -||+.+....+.+.+.|...||=-++=...-.++|++.+++.++-+.+.-+|.-
T Consensus 44 e~P~~~Lp~~---~e~Di~va~~lHPDl~~~L~e~~~~~~~~alIvp~~~~~g~rkqL~~~~~~~g~e~~~p~p~C~Le~ 120 (224)
T COG1810 44 EEPEDLLPKL---PEADIVVAYGLHPDLLLALPEKAAEGGVKALIVPAEPPEGLRKQLKEFCEELGVEFEAPEPFCSLEP 120 (224)
T ss_pred hCHHHhcCCC---CCCCEEEEeccCccHHHHHHHHHHhCCccEEEEecCCChhHHHHHHHHhhhcceeeecCCccccCCC
Confidence 3566777643 468999999 689999999999888887666644433344567888888766665555544421
Q ss_pred -HHHHHHHHHHHHhhhcCCeEE-------EecCCCCCCCCcHHHHHHHHHHHh
Q 027747 87 -GSILLQQAAISASFHYKNVEI-------VESRPNARDFPSPDATQIANNLSN 131 (219)
Q Consensus 87 -Gv~ll~~~~~~aa~~~~dieI-------iE~Hh~K~DaPSGTA~~la~~i~~ 131 (219)
|---+.+|+....+ |-+|| .+. +-++.||=|.+.-+|+.+.-
T Consensus 121 ~~~p~i~~F~e~FG~--P~vevev~~~~i~~V-~V~RsaPCGsT~~vAk~l~G 170 (224)
T COG1810 121 NENPHIDEFAERFGK--PEVEVEVENGKIKDV-DVLRSAPCGSTWYVAKRLVG 170 (224)
T ss_pred CCChHHHHHHHHcCC--ceEEEEecCCeEEEE-EEEecCCCchHHHHHHHhcC
Confidence 12234555555543 43332 222 22789999999999998753
No 104
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=69.18 E-value=8.1 Score=32.89 Aligned_cols=54 Identities=6% Similarity=0.018 Sum_probs=42.7
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
..=+-||-++|+++...+ +.|.++|.=++|+.. .+.+-.++++++.|+|..++-
T Consensus 72 ~~plSIDT~~~~v~~~aL----~~g~~~ind~~~~~~--~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 72 DVPLSIDTFNPEVAEAAL----KAGADIINDISGFED--DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp TSEEEEEESSHHHHHHHH----HHTSSEEEETTTTSS--STTHHHHHHHHTSEEEEESES
T ss_pred CeEEEEECCCHHHHHHHH----HcCcceEEecccccc--cchhhhhhhcCCCEEEEEecc
Confidence 345899999999877655 459999999999974 245666777788999998877
No 105
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=69.12 E-value=16 Score=29.39 Aligned_cols=70 Identities=19% Similarity=0.052 Sum_probs=46.0
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEEC-CChhhHHHHHHH--HH---HcCCcEEEecCCCChhhHHHHHHHhhccCceEE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDF-TDASTVYDNVKQ--AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDF-S~p~~~~~~~~~--~~---~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv 79 (219)
|+...++++++.+ .+|+||=+ ++++++.+.+.. .+ ..|.-+|-.|| .++++..++.+.++++++..+
T Consensus 44 g~~~~~s~~e~~~------~~dvvi~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT-~~p~~~~~~~~~~~~~g~~~v 116 (163)
T PF03446_consen 44 GAEVADSPAEAAE------QADVVILCVPDDDAVEAVLFGENILAGLRPGKIIIDMST-ISPETSRELAERLAAKGVRYV 116 (163)
T ss_dssp TEEEESSHHHHHH------HBSEEEE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---HHHHHHHHHHHHHTTEEEE
T ss_pred hhhhhhhhhhHhh------cccceEeecccchhhhhhhhhhHHhhccccceEEEecCC-cchhhhhhhhhhhhhccceee
Confidence 5667788999987 57977654 666777777664 33 34555555555 677787888888777787777
Q ss_pred Ecc
Q 027747 80 IAP 82 (219)
Q Consensus 80 ~sp 82 (219)
=+|
T Consensus 117 dap 119 (163)
T PF03446_consen 117 DAP 119 (163)
T ss_dssp EEE
T ss_pred eee
Confidence 766
No 106
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=68.33 E-value=17 Score=32.73 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=43.8
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecCCCC---------------hhhHHHHHHHhhccCceEEEccChhHH
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVPHIQ---------------LETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTTG~~---------------~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
+.+..+..+.+|.++|.+-|+==.||+ ..++++|-+++++++++|++=.|..-|
T Consensus 30 ~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~ 98 (273)
T PF10566_consen 30 TTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSETG 98 (273)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCHT
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 456778999999999999999999996 567899999999999999988887763
No 107
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=68.27 E-value=27 Score=29.80 Aligned_cols=79 Identities=10% Similarity=0.018 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHHHcCCcEEEec---CC--CChhhHHHHHHHhhccCceEEEccChhHHHHHH---HHHHHHHhhhcCCe
Q 027747 34 DASTVYDNVKQATAFGMRSVVYV---PH--IQLETVSALSAFCDKASMGCLIAPTLSIGSILL---QQAAISASFHYKNV 105 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGT---TG--~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll---~~~~~~aa~~~~di 105 (219)
..+.+.+.++++.+.|+.+.+.+ |+ .+++++..+-+.+.+.+...++-+.+ .|...= .++++.+.+.+++
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~li~~l~~~~~~- 190 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT-VGLATPEEVAELVKALREALPD- 190 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh-cCCcCHHHHHHHHHHHHHhCCC-
Confidence 46778899999999999998876 45 66677666666665667666665443 554332 3445555555566
Q ss_pred EEEecC-CCC
Q 027747 106 EIVESR-PNA 114 (219)
Q Consensus 106 eIiE~H-h~K 114 (219)
-.++.| |+-
T Consensus 191 ~~~~~H~Hn~ 200 (265)
T cd03174 191 VPLGLHTHNT 200 (265)
T ss_pred CeEEEEeCCC
Confidence 567788 653
No 108
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=68.08 E-value=39 Score=31.68 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=45.5
Q ss_pred CCCcEEE-ECC----Ch-hhHHHHHHHHHH--cCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHH
Q 027747 24 KARAVVI-DFT----DA-STVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 95 (219)
Q Consensus 24 ~~~DVvI-DFS----~p-~~~~~~~~~~~~--~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~ 95 (219)
...|+|+ .+. .. ......++.+.+ .++|+|+...|-..++ .++.-++.++|++.+.+|.-.+....+++
T Consensus 309 p~VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l~G~~~e~---~~~iL~~~Gipvf~~~~~~~a~~~~v~~~ 385 (392)
T PRK14046 309 RNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAGTNVEE---GRKILAESGLPIITADTLAEAAEKAVEAW 385 (392)
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHH---HHHHHHHcCCCeeecCCHHHHHHHHHHHH
Confidence 5678544 433 22 233344444445 6899999998844433 33323347899999999998887776666
Q ss_pred HHH
Q 027747 96 ISA 98 (219)
Q Consensus 96 ~~a 98 (219)
+.+
T Consensus 386 ~~~ 388 (392)
T PRK14046 386 KGA 388 (392)
T ss_pred hhh
Confidence 544
No 109
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=68.03 E-value=37 Score=28.48 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=23.0
Q ss_pred CCCcEE-EECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 24 KARAVV-IDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 24 ~~~DVv-IDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.++|.+ +.-+.++.+.+.+..+.+.|+|+|.-
T Consensus 59 ~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 59 QGVDAIIINPASPTALNPVIEEACEAGIPVVSF 91 (272)
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE
Confidence 378854 44455566667788888999999973
No 110
>PLN03194 putative disease resistance protein; Provisional
Probab=68.02 E-value=32 Score=29.39 Aligned_cols=108 Identities=11% Similarity=0.182 Sum_probs=69.2
Q ss_pred CCCcEEEECCChhh---HHHHH-HHHHHcCCcEEEecCCCChhh--HHHHHHHhhccCce-EEEccChhHHHHHHHHHHH
Q 027747 24 KARAVVIDFTDAST---VYDNV-KQATAFGMRSVVYVPHIQLET--VSALSAFCDKASMG-CLIAPTLSIGSILLQQAAI 96 (219)
Q Consensus 24 ~~~DVvIDFS~p~~---~~~~~-~~~~~~g~p~ViGTTG~~~~~--~~~l~~~a~~~~~~-vv~spNfSlGv~ll~~~~~ 96 (219)
..+||.|.|.-++. ..+++ +...+.|+.+-+--..+...+ .+.|..+.++.++. +|+|+|+.-...-|.++++
T Consensus 25 ~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~~ 104 (187)
T PLN03194 25 KPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELAL 104 (187)
T ss_pred CCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHHH
Confidence 47999999999984 44444 444567888887654333221 24565555555444 5789999999999988888
Q ss_pred HHhh------hcCCeEEEec-CCCCCCCCcHHHHHHHHHHHh
Q 027747 97 SASF------HYKNVEIVES-RPNARDFPSPDATQIANNLSN 131 (219)
Q Consensus 97 ~aa~------~~~dieIiE~-Hh~K~DaPSGTA~~la~~i~~ 131 (219)
.... .||+++--|- |+.+...+.-+-.++-+++.+
T Consensus 105 I~e~~~~ViPIFY~VdPsdVr~q~~~~~~~e~v~~Wr~AL~~ 146 (187)
T PLN03194 105 IMESKKRVIPIFCDVKPSQLRVVDNGTCPDEEIRRFNWALEE 146 (187)
T ss_pred HHHcCCEEEEEEecCCHHHhhccccCCCCHHHHHHHHHHHHH
Confidence 7543 2477765554 322323355566666666665
No 111
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=67.02 E-value=21 Score=35.44 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCcEEEecCCCC---hhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHH
Q 027747 38 VYDNVKQATAFGMRSVVYVPHIQ---LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI 96 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~~---~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~ 96 (219)
+..+++-..++|+|+|+.-.=|. +++++.|+++|++.+++++++.-|+.|-.=-..+++
T Consensus 390 L~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~ 451 (587)
T PRK13507 390 LLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGARVAVSRHWEKGGEGALELAD 451 (587)
T ss_pred HHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHH
Confidence 45567777889999999987765 456788999999999999999999998665544443
No 112
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.57 E-value=34 Score=30.46 Aligned_cols=87 Identities=15% Similarity=0.138 Sum_probs=53.0
Q ss_pred CCChhhHHHHHHHHHHcCCc-EEE---ecCCCChh-----hHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc
Q 027747 32 FTDASTVYDNVKQATAFGMR-SVV---YVPHIQLE-----TVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY 102 (219)
Q Consensus 32 FS~p~~~~~~~~~~~~~g~p-~Vi---GTTG~~~~-----~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~ 102 (219)
|..++-....+++..+.|.+ +++ ||+||... ++..|..+-+..+.||++-|--|.|.-=+...+..+|-.+
T Consensus 132 ~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~ 211 (250)
T PRK13397 132 MATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAV 211 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHh
Confidence 66778888888888887764 433 78888753 2233444444467899996668888632222222222222
Q ss_pred -CCeEEEecCCC----CCCCC
Q 027747 103 -KNVEIVESRPN----ARDFP 118 (219)
Q Consensus 103 -~dieIiE~Hh~----K~DaP 118 (219)
.|==++|.|.+ .-|.|
T Consensus 212 GAdGl~IE~H~~P~~A~sD~~ 232 (250)
T PRK13397 212 GANGIMMEVHPDPDHALSDAA 232 (250)
T ss_pred CCCEEEEEecCCcccccCchh
Confidence 34449999973 46655
No 113
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=66.33 E-value=16 Score=32.28 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=41.6
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-hhHHHHHHHhhccCceEEEccC
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-ETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-~~~~~l~~~a~~~~~~vv~spN 83 (219)
=+.||-++|+++...++.| .|.++|=-.+|... +..+.+-.++.+++.|+|+-++
T Consensus 72 piSIDT~~~~v~e~aL~~~--~G~~iINsIs~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 72 PLMLDSTNWEVIEAGLKCC--QGKCVVNSINLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred cEEeeCCcHHHHHHHHhhC--CCCcEEEeCCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 3899999999988877776 49999999998862 2345565556678888888665
No 114
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=66.12 E-value=11 Score=34.56 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=28.0
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHH-HHHHHcCCcEEEec
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNV-KQATAFGMRSVVYV 56 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~-~~~~~~g~p~ViGT 56 (219)
++++++. ++|+|||-+....+...+ ++|.++|+|+|.|.
T Consensus 109 ~~~~~~~------~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 109 ELEELVK------EVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred HHHHHhc------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 4555654 689999988766555444 77888999998764
No 115
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=65.96 E-value=21 Score=30.77 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=40.6
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHc-CCcEEEecCCCChhhHH
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAF-GMRSVVYVPHIQLETVS 65 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~-g~p~ViGTTG~~~~~~~ 65 (219)
+++.+.++.++++. .+|+||=-+.|..+.+.++.+... +..+|.-+.|.+.++++
T Consensus 48 ~g~~~~~~~~~~~~------~advVil~v~~~~~~~v~~~l~~~~~~~vvs~~~gi~~~~l~ 103 (267)
T PRK11880 48 YGVRAATDNQEAAQ------EADVVVLAVKPQVMEEVLSELKGQLDKLVVSIAAGVTLARLE 103 (267)
T ss_pred cCCeecCChHHHHh------cCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEecCCCCHHHHH
Confidence 35666677777764 689999888888888888776654 56678888888765544
No 116
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=65.81 E-value=32 Score=29.51 Aligned_cols=76 Identities=11% Similarity=0.173 Sum_probs=38.0
Q ss_pred CccccccCHHHHHhcccCCCCCc-EEEECCC---hhhHHHHHHH--------------------HHHcCCcEEEecC--C
Q 027747 5 LEIPVMSDLTMVLGSISQSKARA-VVIDFTD---ASTVYDNVKQ--------------------ATAFGMRSVVYVP--H 58 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~D-VvIDFS~---p~~~~~~~~~--------------------~~~~g~p~ViGTT--G 58 (219)
.++.|+++++++..=+. -++| |.+|-|. |+.+.+.++. |.+.|.-+| ||| |
T Consensus 46 ~~V~ITPT~~ev~~l~~--aGadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~G~D~I-~TTLsG 122 (192)
T PF04131_consen 46 SDVYITPTLKEVDALAE--AGADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAELGFDII-GTTLSG 122 (192)
T ss_dssp SS--BS-SHHHHHHHHH--CT-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHTT-SEE-E-TTTT
T ss_pred CCeEECCCHHHHHHHHH--cCCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHcCCCEE-Eccccc
Confidence 46778887777543110 2688 6899885 4445555544 445554444 776 6
Q ss_pred CCh------hhHHHHHHHhhccCceEEEccCh
Q 027747 59 IQL------ETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 59 ~~~------~~~~~l~~~a~~~~~~vv~spNf 84 (219)
|++ .+++.++++++. ++|++.=.++
T Consensus 123 YT~~t~~~~pD~~lv~~l~~~-~~pvIaEGri 153 (192)
T PF04131_consen 123 YTPYTKGDGPDFELVRELVQA-DVPVIAEGRI 153 (192)
T ss_dssp SSTTSTTSSHHHHHHHHHHHT-TSEEEEESS-
T ss_pred CCCCCCCCCCCHHHHHHHHhC-CCcEeecCCC
Confidence 654 345666666653 6666554444
No 117
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=65.40 E-value=46 Score=27.77 Aligned_cols=32 Identities=22% Similarity=0.150 Sum_probs=21.2
Q ss_pred CCcEEEEC-CChhhHHHHHHHHHHcCCcEEEec
Q 027747 25 ARAVVIDF-TDASTVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 25 ~~DVvIDF-S~p~~~~~~~~~~~~~g~p~ViGT 56 (219)
.+|.+|=+ ..+....+.++.+.+.|+|+|.--
T Consensus 55 ~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~ 87 (273)
T cd06305 55 KVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFD 87 (273)
T ss_pred CCCEEEEecCChhhhHHHHHHHHHcCCCEEEec
Confidence 68865544 344555666777888888887653
No 118
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=65.38 E-value=35 Score=30.04 Aligned_cols=71 Identities=8% Similarity=0.100 Sum_probs=46.6
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHH---HcCCcEEEecCCCChhhHHHHHHHhhccCceEE-Ecc
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAP 82 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~---~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv-~sp 82 (219)
+.+..+.++++. .+|+||=-..|..+.+.++.+. ..+..+|.-+-|.+.+++ +++.. +.+|+ .-|
T Consensus 52 ~~~~~~~~e~~~------~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l---~~~~~--~~~vvR~MP 120 (277)
T PRK06928 52 VELADNEAEIFT------KCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDL---LEITP--GLQVSRLIP 120 (277)
T ss_pred eEEeCCHHHHHh------hCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHH---HHHcC--CCCEEEEeC
Confidence 344566666664 6899998888888888777553 457788888889988654 44432 22343 347
Q ss_pred ChhHHH
Q 027747 83 TLSIGS 88 (219)
Q Consensus 83 NfSlGv 88 (219)
|....+
T Consensus 121 N~~~~~ 126 (277)
T PRK06928 121 SLTSAV 126 (277)
T ss_pred ccHHHH
Confidence 766544
No 119
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=65.04 E-value=19 Score=28.07 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=18.4
Q ss_pred CCcEEEECCChhhH-HHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p~~~-~~~~~~~~~~g~p~ViGTT 57 (219)
++|+|||.+..... ....++|.++++|+|.+-+
T Consensus 89 ~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 89 GVDLVIDAIDNIAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 46666666544332 3344666666666666444
No 120
>PLN02688 pyrroline-5-carboxylate reductase
Probab=64.91 E-value=32 Score=29.61 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=45.4
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhccCceEE-E
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-I 80 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv-~ 80 (219)
.|+.+.++..+++. .+|+||=-..|+.+.+.++.... .+..+|.-+.|.+.++ ++++... .+++ .
T Consensus 47 ~g~~~~~~~~e~~~------~aDvVil~v~~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~---l~~~~~~--~~vvr~ 115 (266)
T PLN02688 47 LGVKTAASNTEVVK------SSDVIILAVKPQVVKDVLTELRPLLSKDKLLVSVAAGITLAD---LQEWAGG--RRVVRV 115 (266)
T ss_pred cCCEEeCChHHHHh------cCCEEEEEECcHHHHHHHHHHHhhcCCCCEEEEecCCCcHHH---HHHHcCC--CCEEEE
Confidence 46666777777764 68998888888888888765533 3444565567877654 4444322 1666 5
Q ss_pred ccChhH
Q 027747 81 APTLSI 86 (219)
Q Consensus 81 spNfSl 86 (219)
.||...
T Consensus 116 mP~~~~ 121 (266)
T PLN02688 116 MPNTPC 121 (266)
T ss_pred CCCcHH
Confidence 777643
No 121
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=64.86 E-value=24 Score=35.27 Aligned_cols=58 Identities=10% Similarity=0.164 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCcEEEecCCCC---hhhHHHHHHHhh-ccC-ceEEEccChhHHHHHHHHHH
Q 027747 38 VYDNVKQATAFGMRSVVYVPHIQ---LETVSALSAFCD-KAS-MGCLIAPTLSIGSILLQQAA 95 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~~---~~~~~~l~~~a~-~~~-~~vv~spNfSlGv~ll~~~~ 95 (219)
+..+++-+.++|+|+|+.-.-|. +++++.|+++|+ +.+ +++++|.-|+.|-.=-..++
T Consensus 426 L~~Hien~~~fgvpvVVAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA 488 (625)
T PTZ00386 426 LQRHIQNIRKFGVPVVVALNKFSTDTDAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLA 488 (625)
T ss_pred HHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHhcCCccEEEechhhccchhHHHHH
Confidence 34466677889999999998876 456788899998 778 69999999999865544443
No 122
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=64.41 E-value=17 Score=26.59 Aligned_cols=45 Identities=13% Similarity=0.318 Sum_probs=26.6
Q ss_pred HHHHHHHHHcCCcEEEecCCCChhhHHH-HHHHhhccCceEEEccC
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQLETVSA-LSAFCDKASMGCLIAPT 83 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~~~~~~~-l~~~a~~~~~~vv~spN 83 (219)
.+..+........+|+=+.--++..... +..+|+++++|+++.++
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s 66 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPS 66 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESH
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECC
Confidence 3444444455556666666666655555 66666666666666664
No 123
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=64.26 E-value=40 Score=30.19 Aligned_cols=47 Identities=4% Similarity=0.068 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHH-Hhh--ccCceEEEcc
Q 027747 36 STVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSA-FCD--KASMGCLIAP 82 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~-~a~--~~~~~vv~sp 82 (219)
+.+..++++++++|+. +|.|||| ++.++..++-+ .++ ..++|++..-
T Consensus 28 ~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv 83 (303)
T PRK03620 28 AAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGA 83 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 4567777777777764 3457776 55555444322 222 2346666544
No 124
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=64.21 E-value=12 Score=34.83 Aligned_cols=40 Identities=18% Similarity=0.043 Sum_probs=29.8
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHH-HHHHHHHcCCcEEEecC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYD-NVKQATAFGMRSVVYVP 57 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~-~~~~~~~~g~p~ViGTT 57 (219)
++++.+. .+|+|||.+.--.+.. .-+.|.++++|+|.|.+
T Consensus 124 ~~~~~~~------~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~ 164 (370)
T PRK05600 124 NAVELLN------GVDLVLDGSDSFATKFLVADAAEITGTPLVWGTV 164 (370)
T ss_pred HHHHHHh------CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE
Confidence 4555664 6999999887655544 44789999999998764
No 125
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=64.21 E-value=54 Score=27.40 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=21.0
Q ss_pred CCcEE-EECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVV-IDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVv-IDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+ |.-..++...+.++.+.+.|+|+|.-
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~ 87 (272)
T cd06301 56 GVDAIIVVPVDTAATAPIVKAANAAGIPLVYV 87 (272)
T ss_pred CCCEEEEecCchhhhHHHHHHHHHCCCeEEEe
Confidence 67854 44444455567778888889998864
No 126
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=64.17 E-value=23 Score=26.93 Aligned_cols=41 Identities=17% Similarity=0.165 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCce
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~ 77 (219)
.+.+.++.+++.|.++|+=.|.+...+.+.+.+++++.+.+
T Consensus 58 ~~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~ 98 (143)
T PF13671_consen 58 ILNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYP 98 (143)
T ss_dssp HHHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEE
T ss_pred HHHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCe
Confidence 34566777788999999988888888888888888766655
No 127
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=63.87 E-value=18 Score=33.88 Aligned_cols=42 Identities=5% Similarity=0.102 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCChhhH-HHHHHHhhccCce
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQLETV-SALSAFCDKASMG 77 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~~~~-~~l~~~a~~~~~~ 77 (219)
+.+...+..|.++|+|+|+++-|.++... +.+++++++.+..
T Consensus 58 ~~L~~~L~~~~~~gIkvI~NaGg~np~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 58 RDLRPLLPAAAEKGIKVITNAGGLNPAGCADIVREIARELGLS 100 (362)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 36678889999999999999999998764 5577777775543
No 128
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=63.72 E-value=13 Score=34.39 Aligned_cols=33 Identities=18% Similarity=-0.005 Sum_probs=20.8
Q ss_pred CCcEEEECCChhhHH-HHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~-~~~~~~~~~g~p~ViGTT 57 (219)
++|+|||-|..-... ..-++|.++++|+|.|.+
T Consensus 225 ~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~ 258 (376)
T PRK08762 225 DVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAV 258 (376)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 577777776543333 344667777777777644
No 129
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=63.64 E-value=15 Score=31.45 Aligned_cols=31 Identities=23% Similarity=0.166 Sum_probs=21.3
Q ss_pred CCcEEEECCC-hhhHHHHHHHHHHc-CCcEEEe
Q 027747 25 ARAVVIDFTD-ASTVYDNVKQATAF-GMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS~-p~~~~~~~~~~~~~-g~p~ViG 55 (219)
.+|+|||-+. ++.-....+.|.++ ++|+|.|
T Consensus 117 ~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~ 149 (212)
T PRK08644 117 DCDIVVEAFDNAETKAMLVETVLEHPGKKLVAA 149 (212)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 5788887743 34434556777887 8888876
No 130
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=63.13 E-value=25 Score=25.89 Aligned_cols=33 Identities=9% Similarity=0.228 Sum_probs=15.2
Q ss_pred cCCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 48 FGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 48 ~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
....+|+=..--++...+.+.++|+++++|+++
T Consensus 23 gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~ 55 (82)
T PRK13601 23 CNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVY 55 (82)
T ss_pred CCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 344444444444444444444444444555443
No 131
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=62.99 E-value=26 Score=31.00 Aligned_cols=34 Identities=9% Similarity=0.065 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHH
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALS 68 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~ 68 (219)
.+.+.+++++.++.|+. +|.|||| ++.++..++-
T Consensus 19 ~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~ 58 (279)
T cd00953 19 KEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELL 58 (279)
T ss_pred HHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHH
Confidence 56677777777777765 3457777 5555554443
No 132
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=62.59 E-value=52 Score=28.80 Aligned_cols=71 Identities=7% Similarity=0.068 Sum_probs=47.2
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+|+.+..+..++++ .+||||=-..|..+.+.+..... .+.-+|.-..|.+.+++. ++.. .+.||+-+
T Consensus 51 ~g~~~~~~~~e~~~------~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~---~~~~-~~~~v~r~ 120 (279)
T PRK07679 51 YGVKGTHNKKELLT------DANILFLAMKPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIR---NLLQ-KDVPIIRA 120 (279)
T ss_pred cCceEeCCHHHHHh------cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHH---HHcC-CCCeEEEE
Confidence 45666777777764 68999888888887777665543 345566666899886544 4432 34677776
Q ss_pred -cChh
Q 027747 82 -PTLS 85 (219)
Q Consensus 82 -pNfS 85 (219)
||+.
T Consensus 121 mPn~~ 125 (279)
T PRK07679 121 MPNTS 125 (279)
T ss_pred CCCHH
Confidence 6666
No 133
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=62.38 E-value=55 Score=30.48 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=45.7
Q ss_pred CCChhhHHHHHHHHHHcCCc-EEE---ecCCC-----ChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc
Q 027747 32 FTDASTVYDNVKQATAFGMR-SVV---YVPHI-----QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY 102 (219)
Q Consensus 32 FS~p~~~~~~~~~~~~~g~p-~Vi---GTTG~-----~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~ 102 (219)
|+.++-....+++..+.|.+ +++ ||+.| ..-++..|..+-+..+.||++=|--|.|--=+...+..+|-.+
T Consensus 235 ~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~ 314 (360)
T PRK12595 235 SATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAI 314 (360)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHc
Confidence 55667777777777776663 444 55543 3234555555555567898885567777211111111111112
Q ss_pred -CCeEEEecCCC
Q 027747 103 -KNVEIVESRPN 113 (219)
Q Consensus 103 -~dieIiE~Hh~ 113 (219)
-|--++|.|..
T Consensus 315 GAdg~~iE~H~d 326 (360)
T PRK12595 315 GADGVMAEVHPD 326 (360)
T ss_pred CCCeEEEEecCC
Confidence 45578999975
No 134
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=62.08 E-value=31 Score=31.07 Aligned_cols=46 Identities=13% Similarity=0.106 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHHH-hh--ccCceEEE
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSAF-CD--KASMGCLI 80 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~~-a~--~~~~~vv~ 80 (219)
.+++.+++++.+++|+. ++.|||| +|.++..++-+. .+ ..++|++.
T Consensus 24 ~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpvia 78 (299)
T COG0329 24 EEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIA 78 (299)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEE
Confidence 47889999999999986 6679999 566665555333 22 23577665
No 135
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=62.04 E-value=25 Score=29.12 Aligned_cols=57 Identities=11% Similarity=0.120 Sum_probs=36.5
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCC-hhhHHHHHHHhh
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ-LETVSALSAFCD 72 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~-~~~~~~l~~~a~ 72 (219)
..|+|.++. .+||+||..... .-.+......+.++|+++-.++.. .+-.+.++.+++
T Consensus 50 ~~~~E~i~~-----l~PDlIi~~~~~-~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~ 107 (238)
T PF01497_consen 50 SPNLEAILA-----LKPDLIIGSSFY-GQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGK 107 (238)
T ss_dssp SB-HHHHHH-----T--SEEEEETTS-SCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHH
T ss_pred CccHHHHHh-----CCCCEEEEeccc-cchHHHHHHhcccceEEEeecccchHHHHHHHHHHHH
Confidence 448888887 479988877766 234455566688999998777654 444556666554
No 136
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=61.98 E-value=17 Score=32.51 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=24.6
Q ss_pred HHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 42 VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 42 ~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
.......+..+||-+++-- .....|.++|.+.++|++.+
T Consensus 114 ~~~ll~~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~ 152 (268)
T PRK15116 114 VAEYMSAGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTT 152 (268)
T ss_pred HHHHhcCCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEE
Confidence 3333344667888777642 23456777777788888766
No 137
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=61.60 E-value=23 Score=34.03 Aligned_cols=115 Identities=7% Similarity=-0.012 Sum_probs=63.2
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhh-HHH----HHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDAST-VYD----NVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~-~~~----~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+.+.+++++++. .+|+||.-..+.. ++. -+..++..+.-+++-|+|++..+ |.+.+.+++.-++..
T Consensus 68 i~~~~~~~ea~~------~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~---l~~~~~~~~r~~~~h 138 (495)
T PRK07531 68 LTFCASLAEAVA------GADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSD---LQEGMTHPERLFVAH 138 (495)
T ss_pred eEeeCCHHHHhc------CCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCcceEEEEe
Confidence 566778888775 6999997654442 122 23344455666888888998754 445555566667777
Q ss_pred cChhHHH-HHH---------HHHHHHHhhhcCCeEEEecCCCCCCCCcHHHHHHHHHH-Hh
Q 027747 82 PTLSIGS-ILL---------QQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNL-SN 131 (219)
Q Consensus 82 pNfSlGv-~ll---------~~~~~~aa~~~~dieIiE~Hh~K~DaPSGTA~~la~~i-~~ 131 (219)
||--.-. .|. ....+.+.+++-.+--.- .|-++|.|--++-++...+ .+
T Consensus 139 P~nP~~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~-v~~~k~~~gfi~nrl~~a~~~E 198 (495)
T PRK07531 139 PYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKP-VHIAKEIDAFVGDRLLEALWRE 198 (495)
T ss_pred cCCCcccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEE-EeecCCCcchhHHHHHHHHHHH
Confidence 7653211 111 122333333321110000 1123588888888777774 44
No 138
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=61.53 E-value=24 Score=33.80 Aligned_cols=61 Identities=7% Similarity=0.167 Sum_probs=42.0
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecCCC----ChhhHHHHHHHhhccCceEEEccChhHHHHHHHHH
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVPHI----QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 94 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTTG~----~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~ 94 (219)
.|+.+.+.+.......+++|++|++. ..+++++|.++|++++++++.=.-++.+...+..+
T Consensus 190 D~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~ 254 (444)
T TIGR03531 190 DVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMEL 254 (444)
T ss_pred CHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhh
Confidence 45555555542111457788887752 57889999999999999999877777665444433
No 139
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=61.49 E-value=14 Score=34.06 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=23.7
Q ss_pred CCcEEEECCChhh-HHHHHHHHHHcCCcEEEec
Q 027747 25 ARAVVIDFTDAST-VYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 25 ~~DVvIDFS~p~~-~~~~~~~~~~~g~p~ViGT 56 (219)
++|+|||-+.-.. -...-++|.++++|+|.|.
T Consensus 116 ~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 116 GVDLIIDATDNFETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 6899999865444 4445588899999999754
No 140
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=61.31 E-value=43 Score=30.46 Aligned_cols=75 Identities=12% Similarity=0.094 Sum_probs=49.3
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHH---HcCCcEEEecCCCChhhH----HHHHHHhhccCceEE
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETV----SALSAFCDKASMGCL 79 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~---~~g~p~ViGTTG~~~~~~----~~l~~~a~~~~~~vv 79 (219)
+.+++|+++++. .+|+||=.+.+..+.+.++... ..+.++|+-+-|+..+.. +.|++........++
T Consensus 65 i~~t~d~~~a~~------~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l 138 (341)
T PRK12439 65 LRATTDFAEAAN------CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGIL 138 (341)
T ss_pred eEEECCHHHHHh------cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEE
Confidence 446778888775 6898887777777777666554 345678888889986322 234443322334577
Q ss_pred EccChhHH
Q 027747 80 IAPTLSIG 87 (219)
Q Consensus 80 ~spNfSlG 87 (219)
.-|||..-
T Consensus 139 ~GP~~a~e 146 (341)
T PRK12439 139 AGPNIARE 146 (341)
T ss_pred ECCCHHHH
Confidence 88998874
No 141
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=61.15 E-value=42 Score=28.94 Aligned_cols=72 Identities=10% Similarity=0.057 Sum_probs=44.3
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHH-HHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~-~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
++.++++.++++. .+|+||=-+.|+.+.+.++.. ...+.-+|.-..|.+-++ |+++.......+...||.
T Consensus 48 ~~~~~~~~~~~~~------~aDvVilav~p~~~~~vl~~l~~~~~~~vis~~ag~~~~~---l~~~~~~~~~~~r~~P~~ 118 (258)
T PRK06476 48 KVRIAKDNQAVVD------RSDVVFLAVRPQIAEEVLRALRFRPGQTVISVIAATDRAA---LLEWIGHDVKLVRAIPLP 118 (258)
T ss_pred CceEeCCHHHHHH------hCCEEEEEeCHHHHHHHHHHhccCCCCEEEEECCCCCHHH---HHHHhCCCCCEEEECCCC
Confidence 3566777777775 589988888888888877654 223455555555666654 454443223455566664
Q ss_pred hH
Q 027747 85 SI 86 (219)
Q Consensus 85 Sl 86 (219)
..
T Consensus 119 ~~ 120 (258)
T PRK06476 119 FV 120 (258)
T ss_pred hh
Confidence 33
No 142
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=60.79 E-value=27 Score=32.66 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=46.8
Q ss_pred cCHHHHHhcccCCCCCcEEEECC-ChhhHHHHHHHHHHcCCcEEEecCCC-------------------Ch---hhHHHH
Q 027747 11 SDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHI-------------------QL---ETVSAL 67 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGTTG~-------------------~~---~~~~~l 67 (219)
++-++++. .+||.|||.- +-+.=.+.+++|-.+|++++.. ||- ++ .-..+|
T Consensus 156 ~s~edll~-----gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss-~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrL 229 (430)
T KOG2018|consen 156 SSEEDLLS-----GNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISS-TGAAAKSDPTRVNVADISETEEDPLSRSVRRRL 229 (430)
T ss_pred Cchhhhhc-----CCCCeEeEhhhhhhhhhHHHHHHHHcCCceEec-cCccccCCCceeehhhccccccCcHHHHHHHHH
Confidence 35566765 3799999975 4566688999999999998754 332 11 123456
Q ss_pred HHHhhccCceEEEccCh
Q 027747 68 SAFCDKASMGCLIAPTL 84 (219)
Q Consensus 68 ~~~a~~~~~~vv~spNf 84 (219)
+..-...++|||+|.-.
T Consensus 230 rk~GI~~GIpVVFS~Ek 246 (430)
T KOG2018|consen 230 RKRGIEGGIPVVFSLEK 246 (430)
T ss_pred HHhccccCCceEEecCC
Confidence 66655678999998543
No 143
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=60.68 E-value=13 Score=36.84 Aligned_cols=61 Identities=11% Similarity=0.285 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCcEEEecCCCC---hhhHHHHHHHhhccCceEEEccChhHHH----HHHHHHHHHH
Q 027747 38 VYDNVKQATAFGMRSVVYVPHIQ---LETVSALSAFCDKASMGCLIAPTLSIGS----ILLQQAAISA 98 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~~---~~~~~~l~~~a~~~~~~vv~spNfSlGv----~ll~~~~~~a 98 (219)
+..+++-..++|+|+|+.--=|. +++++.|+++|++.++++++|.-|+-|- .|...+++.+
T Consensus 360 L~rHIeNik~fGvpvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 360 LERHIENIKKFGVPVVVAINRFPTDTDAEIELIRELCEELGVRAAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp HHHHHHHHHCTT--EEEEEE--TTS-HHHHHHHHHHCCCCCEEEEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHHHhCCCCEEEechhhcccccHHHHHHHHHHHh
Confidence 45566777789999999976654 5678889999999999999999999874 4444444444
No 144
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=60.03 E-value=25 Score=30.20 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHcCCcEE-E-ecCCCChhhHHHHHHHhhc-cCceEEE
Q 027747 36 STVYDNVKQATAFGMRSV-V-YVPHIQLETVSALSAFCDK-ASMGCLI 80 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~V-i-GTTG~~~~~~~~l~~~a~~-~~~~vv~ 80 (219)
+.+...++.+.+.|...+ + ||||.++++...+-+..++ .++|+++
T Consensus 11 e~~~~ia~~v~~~gtDaI~VGGS~gvt~~~~~~~v~~ik~~~~lPvil 58 (205)
T TIGR01769 11 DEIEKIAKNAKDAGTDAIMVGGSLGIVESNLDQTVKKIKKITNLPVIL 58 (205)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCHHHHHHHHHHHHhhcCCCEEE
Confidence 556667778888877644 3 6999999888776555554 6789984
No 145
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=59.92 E-value=22 Score=32.17 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=42.9
Q ss_pred CCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCC-----Chhh-HHHHHHHhhccCceEEE
Q 027747 25 ARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHI-----QLET-VSALSAFCDKASMGCLI 80 (219)
Q Consensus 25 ~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~-----~~~~-~~~l~~~a~~~~~~vv~ 80 (219)
+.- -.+++.+.+.+...++.|.+.+.|+++.++-- ..+. ...++.++++.++||.+
T Consensus 17 ~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPVal 79 (286)
T PRK12738 17 GYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLAL 79 (286)
T ss_pred CceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 344 47889999999999999999999999987531 1122 24466778888999987
No 146
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=59.88 E-value=38 Score=25.54 Aligned_cols=27 Identities=4% Similarity=0.148 Sum_probs=10.1
Q ss_pred cEEEecCCCChhhHHHHHHHhhccCce
Q 027747 51 RSVVYVPHIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 51 p~ViGTTG~~~~~~~~l~~~a~~~~~~ 77 (219)
.+|+=..-.++...+.+..+|+++++|
T Consensus 34 klViiA~D~~~~~~~~i~~~c~~~~Ip 60 (99)
T PRK01018 34 KLVIVASNCPKDIKEDIEYYAKLSGIP 60 (99)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHcCCC
Confidence 333333333333333333333333444
No 147
>PRK07680 late competence protein ComER; Validated
Probab=59.17 E-value=58 Score=28.35 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=44.5
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
++.+..+.++++. .+|+||=-..|..+.+.++.... .+..+|.-+.|.+-+ .|++... ..++-+-|
T Consensus 49 g~~~~~~~~~~~~------~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~---~L~~~~~--~~~~r~~p 117 (273)
T PRK07680 49 GIHVAKTIEEVIS------QSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSITSPISVE---QLETLVP--CQVARIIP 117 (273)
T ss_pred CeEEECCHHHHHH------hCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHH---HHHHHcC--CCEEEECC
Confidence 5666777777765 68998888888888887776543 345555566667654 4555542 23445557
Q ss_pred ChhH
Q 027747 83 TLSI 86 (219)
Q Consensus 83 NfSl 86 (219)
|+.-
T Consensus 118 ~~~~ 121 (273)
T PRK07680 118 SITN 121 (273)
T ss_pred ChHH
Confidence 7654
No 148
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=59.12 E-value=50 Score=28.97 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=49.3
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHH
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 90 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~l 90 (219)
.+++++. +++| ++|.=..|.++...++.+.+.|+|+|.=-+..+.. . ...+.+-+-|+-.|...
T Consensus 83 ~i~~~ia-----~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~d~~~~~~--------~--~~~~~vg~dn~~~G~~~ 147 (322)
T COG1879 83 QIEDLIA-----QGVDAIIINPVDPDALTPAVKKAKAAGIPVVTVDSDIPGP--------G--DRVAYVGSDNYKAGRLA 147 (322)
T ss_pred HHHHHHH-----cCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEEecCCCCC--------C--ceeEEEecCcHHHHHHH
Confidence 4555554 3787 67788889999999999999999999877766542 1 23344444566666655
Q ss_pred HHHHHHHHh
Q 027747 91 LQQAAISAS 99 (219)
Q Consensus 91 l~~~~~~aa 99 (219)
-..+.+.+.
T Consensus 148 a~~l~~~~~ 156 (322)
T COG1879 148 AEYLAKALG 156 (322)
T ss_pred HHHHHHHhC
Confidence 555544443
No 149
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=58.63 E-value=20 Score=33.99 Aligned_cols=88 Identities=17% Similarity=0.098 Sum_probs=57.5
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECC-ChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.+.+++|.+.++.. ...|||||-| .|++--+..-.|+.+|+.+|+=---.+---=..|++.+++ .+++||.-.
T Consensus 86 Ki~vT~D~~~i~~~----~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~--~GviyS~~~ 159 (438)
T COG4091 86 KIAVTDDAELIIAN----DLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADA--AGVIYSGGA 159 (438)
T ss_pred cEEEecchhhhhcC----CcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhh--cCeEEeccC
Confidence 35678888888753 4689999998 5777788888999999999983221111001357777744 577888655
Q ss_pred hHHHHHHHHHHHHHh
Q 027747 85 SIGSILLQQAAISAS 99 (219)
Q Consensus 85 SlGv~ll~~~~~~aa 99 (219)
.=.=...+++.+-++
T Consensus 160 GDeP~~~mEL~efa~ 174 (438)
T COG4091 160 GDEPSSCMELYEFAS 174 (438)
T ss_pred CCCcHHHHHHHHHHH
Confidence 433344455544443
No 150
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=58.63 E-value=37 Score=26.22 Aligned_cols=32 Identities=9% Similarity=-0.008 Sum_probs=14.3
Q ss_pred cCCcEEEecCCCChhhHHHHHHHhhccCceEE
Q 027747 48 FGMRSVVYVPHIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 48 ~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv 79 (219)
.+..+|+=.+-.++...+.++.+|+.+++|++
T Consensus 40 gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~ 71 (108)
T PTZ00106 40 GKAKLVIISNNCPPIRRSEIEYYAMLSKTGVH 71 (108)
T ss_pred CCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEE
Confidence 33444444444444444444444444444443
No 151
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=58.26 E-value=32 Score=31.07 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=41.6
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hh-HHHHHHHhhccCceEEE
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ET-VSALSAFCDKASMGCLI 80 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~-~~~l~~~a~~~~~~vv~ 80 (219)
...++.+.+.+...++.|.+.+.|+++.++-..- +. ...+++++++.++||++
T Consensus 21 ~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~l 79 (284)
T PRK09195 21 PAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLAL 79 (284)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 4788889999999999999999999999853221 11 24467788888999887
No 152
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=58.22 E-value=13 Score=33.89 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=64.6
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEE-ECC-----ChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCce
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVI-DFT-----DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvI-DFS-----~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~ 77 (219)
..|+|++++++++ . ..+|++| =.. .|+.-.+.+..|++.|+.+|.|===+ -.+...|.++|+++++-
T Consensus 17 ~~~iPi~~~~~~a-~-----~~~~~liiGiA~~GG~lp~~w~~~i~~Ai~~Gl~IvsGLH~~-L~ddpel~~~A~~~g~~ 89 (301)
T PF07755_consen 17 KRGIPIVASLEEA-A-----AGADTLIIGIAPAGGRLPPSWRPVILEAIEAGLDIVSGLHDF-LSDDPELAAAAKKNGVR 89 (301)
T ss_dssp SS--BEESSHHHH-H-----CT-SEEEE---STTHCCHCCHHHHHHHHHHTT-EEEE-SSS--HCCHHHHHCCHHCCT--
T ss_pred CCCCCccCCHHHH-h-----cCCCEEEEecCcCCCcCCHHHHHHHHHHHHcCCCEEecChhh-hccCHHHHHHHHHcCCe
Confidence 3799999999999 3 3788654 333 35666799999999999999875432 23457888888888877
Q ss_pred EEEccChhHHHHHHHHHHHHHhhhc--CCeEEEecCC--CCCCCCcHHHHHHHHHHHhcC
Q 027747 78 CLIAPTLSIGSILLQQAAISASFHY--KNVEIVESRP--NARDFPSPDATQIANNLSNLG 133 (219)
Q Consensus 78 vv~spNfSlGv~ll~~~~~~aa~~~--~dieIiE~Hh--~K~DaPSGTA~~la~~i~~~~ 133 (219)
++-.-..-..- .+..--.+.. +-+-++-+-- -|.- ||+.|.+.+.+.|
T Consensus 90 i~DvR~p~~~~----~~~~g~~~~~~~~rv~~vGTDcavGK~t----Tal~L~~~l~~~G 141 (301)
T PF07755_consen 90 IIDVRKPPKDL----PVASGRIREVKAKRVLTVGTDCAVGKMT----TALELRRALRERG 141 (301)
T ss_dssp EEETTS--SS---------SGGGG-SSEEEEEEESSSSSSHHH----HHHHHHHHHHHTT
T ss_pred EeeccCCCccc----ccccCccccCCCCEEEEEccCccccHHH----HHHHHHHHHHHcC
Confidence 76654431111 1111111111 3445555533 2553 8888888888754
No 153
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=58.21 E-value=28 Score=31.67 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=39.8
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCC-------hhhHHHHHHHhhccCceEEE
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ-------LETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~-------~~~~~~l~~~a~~~~~~vv~ 80 (219)
.+-| .+.+.+-+.+...++.|.+.+.|++|.++=-. ..-..-+..++++.++||++
T Consensus 17 ~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~l 80 (286)
T COG0191 17 GYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVAL 80 (286)
T ss_pred CCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEE
Confidence 3443 77888888888888888888888888876211 11223456777788888886
No 154
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=57.93 E-value=2.6 Score=39.02 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=37.5
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCC--CChhhHHHHHHHhhccCceEEEcc
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH--IQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG--~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+--=|||++-+...+.-..|.....+ -|| ++++++.+|.++|+++++|+++-.
T Consensus 165 FKY~vDF~~l~i~e~~g~ic~SRPtN----PTGNVlTdeE~~kldalA~~~giPliIDn 219 (417)
T COG3977 165 FKYHVDFEHLHIGESTGAICVSRPTN----PTGNVLTDEELAKLDALARQHGIPLIIDN 219 (417)
T ss_pred eeeccCHHHcccccccceEEecCCCC----CCCCcccHHHHHHHHHHhhhcCCcEEEec
Confidence 44567888777665554444444433 256 788999999999999999998743
No 155
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=57.93 E-value=36 Score=25.29 Aligned_cols=47 Identities=4% Similarity=0.082 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 38 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
+.+.++...+-...+|+=.---++.-...|..+|+++++|++|.+++
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~ 64 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSK 64 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCH
Confidence 44555544444444554444455555666777777777777777765
No 156
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=57.66 E-value=84 Score=27.95 Aligned_cols=48 Identities=6% Similarity=0.113 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHcCCcE--EEecCC----CChhhHHHHHHH-hh--ccCceEEEcc
Q 027747 35 ASTVYDNVKQATAFGMRS--VVYVPH----IQLETVSALSAF-CD--KASMGCLIAP 82 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~--ViGTTG----~~~~~~~~l~~~-a~--~~~~~vv~sp 82 (219)
.+.+..+++++++.|+.= |.|||| +|.++..++-+. ++ +.++|++...
T Consensus 25 ~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv 81 (296)
T TIGR03249 25 EAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV 81 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 355666667777766543 346666 455554444322 11 1345655543
No 157
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=57.55 E-value=40 Score=33.54 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCCcEEEecCCCC---hhhHHHHHHHhhc-cCceEEEccChhHHHHHHHHHHH
Q 027747 38 VYDNVKQATAFGMRSVVYVPHIQ---LETVSALSAFCDK-ASMGCLIAPTLSIGSILLQQAAI 96 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~~---~~~~~~l~~~a~~-~~~~vv~spNfSlGv~ll~~~~~ 96 (219)
+..+++-..++|+|+|+.-.-|. +++++.|+++|++ .+++++++.-|+.|-.=-..+++
T Consensus 382 L~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~ 444 (578)
T PRK13506 382 LKWHINNVAQYGLPVVVAINRFPTDTDEELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQ 444 (578)
T ss_pred HHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEechhhccchhHHHHHH
Confidence 44467777889999999988875 4667888999988 68899999999998665544443
No 158
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=57.32 E-value=45 Score=30.73 Aligned_cols=9 Identities=11% Similarity=0.265 Sum_probs=7.3
Q ss_pred CeEEEecCC
Q 027747 104 NVEIVESRP 112 (219)
Q Consensus 104 dieIiE~Hh 112 (219)
...|+|.|.
T Consensus 216 GA~iIEkH~ 224 (329)
T TIGR03569 216 GATVIEKHF 224 (329)
T ss_pred CCCEEEeCC
Confidence 456999997
No 159
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=56.98 E-value=25 Score=31.11 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=34.6
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 58 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG 58 (219)
+++.+++. .+|++|+.|..|...-.+-.|+..|+|+|.--.|
T Consensus 270 ~~~~~~~~------~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~ 311 (372)
T cd04949 270 RDLDEVYQ------KAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVN 311 (372)
T ss_pred CCHHHHHh------hhhEEEecccccccChHHHHHHhCCCCEEEecCC
Confidence 46777776 6999999999988888889999999999875444
No 160
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=56.63 E-value=14 Score=35.60 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCCh----hhHHHHHHHhhccCceEEEccChhHHHH
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQL----ETVSALSAFCDKASMGCLIAPTLSIGSI 89 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~~----~~~~~l~~~a~~~~~~vv~spNfSlGv~ 89 (219)
++.+.+.+..+...| .|+||+|-++ |.++.|.++|++.++++-+=+-|.-.+.
T Consensus 195 ~~~l~~~i~~~t~~g--~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~ 251 (460)
T COG0076 195 VDALEEAIDENTIGG--VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLL 251 (460)
T ss_pred HHHHHHHHHhhccCc--eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceee
Confidence 777888887777777 7888887665 7789999999999999887665554443
No 161
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=56.52 E-value=50 Score=31.33 Aligned_cols=50 Identities=12% Similarity=0.032 Sum_probs=24.1
Q ss_pred hHHHHHHHH-HHcCCcEEEecCCCChhhHHHHHHHhhcc-C-ceEEEccChhH
Q 027747 37 TVYDNVKQA-TAFGMRSVVYVPHIQLETVSALSAFCDKA-S-MGCLIAPTLSI 86 (219)
Q Consensus 37 ~~~~~~~~~-~~~g~p~ViGTTG~~~~~~~~l~~~a~~~-~-~~vv~spNfSl 86 (219)
...+.++.. ...++|+|++.||=...+-+.|++..+.. + .|+|+|.|.-.
T Consensus 175 e~a~~vk~V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~ 227 (389)
T TIGR00381 175 EAAKVLEDVLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL 227 (389)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh
Confidence 444444444 33566666666654333333443332211 2 36666666553
No 162
>PRK08185 hypothetical protein; Provisional
Probab=56.38 E-value=37 Score=30.63 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=40.6
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCC-----hhhHHHHHHHhhccCceEEE
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ-----LETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~-----~~~~~~l~~~a~~~~~~vv~ 80 (219)
..+++.+.+.+...++.|.+.+.|+++.++-.. .+-...++.++++.++||.+
T Consensus 16 ~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~l 73 (283)
T PRK08185 16 GAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVPFVI 73 (283)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCCEEE
Confidence 378888999999999999999999999886322 12234566778888888876
No 163
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=56.17 E-value=30 Score=30.66 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHcCCcEEE--ecCCCChhhHHHHHHHhh-ccCceEEEccCh
Q 027747 36 STVYDNVKQATAFGMRSVV--YVPHIQLETVSALSAFCD-KASMGCLIAPTL 84 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~Vi--GTTG~~~~~~~~l~~~a~-~~~~~vv~spNf 84 (219)
+...+.++.+++.|.-.|+ ||||.+.++...+-+.++ +.++|+++=|.=
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCC
Confidence 5567888999999988666 999999888777665555 889999886653
No 164
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=56.00 E-value=55 Score=29.22 Aligned_cols=75 Identities=13% Similarity=0.165 Sum_probs=48.0
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH----cCCcEEEecCCCChhhH----HHHHHHhhccCceE
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQLETV----SALSAFCDKASMGC 78 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~----~g~p~ViGTTG~~~~~~----~~l~~~a~~~~~~v 78 (219)
+.++.++++.+. ..+|++|=++.+..+.+.++.... .+.++|+.+-|+..+.+ +.+.+......+-+
T Consensus 58 i~~~~~~~~~~~-----~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~ 132 (326)
T PRK14620 58 ISVKSAIDEVLS-----DNATCIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAI 132 (326)
T ss_pred eEEeCCHHHHHh-----CCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEe
Confidence 446677777763 268999988888888887776554 45679999999965321 34555442222223
Q ss_pred EEccChhH
Q 027747 79 LIAPTLSI 86 (219)
Q Consensus 79 v~spNfSl 86 (219)
+-.|+|..
T Consensus 133 ~~Gp~~a~ 140 (326)
T PRK14620 133 LSGPSFAK 140 (326)
T ss_pred ecCCcHHH
Confidence 44788754
No 165
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=55.65 E-value=51 Score=24.96 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=36.4
Q ss_pred CCcEEEECCCh---hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 25 ARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 25 ~~DVvIDFS~p---~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+-|++|=||.. ..+.+.++.|.+.|+++|.= |+.+ .|.+++++.+.+++..|
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~I-T~~~-----~l~~~~~~~~~~~~~~p 97 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAI-TSGG-----KLLEMAREHGVPVIIIP 97 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEE-eCCc-----hHHHHHHHcCCcEEECC
Confidence 56888888865 45677788888999877644 4433 26777776777777744
No 166
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=55.58 E-value=26 Score=30.94 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHHHhhc---cCceEEE
Q 027747 34 DASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSAFCDK---ASMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~~a~~---~~~~vv~ 80 (219)
+.+++.++++++++.|+. +|.|||| ++.++..+|-+.+.+ .++|++.
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~ 75 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIA 75 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEe
No 167
>PLN02759 Formate--tetrahydrofolate ligase
Probab=55.54 E-value=39 Score=33.92 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=63.7
Q ss_pred HHHHHHHHHcCCcEEEecCCCCh---hhHHHHHHHhhccC-ceEEEccChhHHHHHHHHHHHHH----hh------hcCC
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKAS-MGCLIAPTLSIGSILLQQAAISA----SF------HYKN 104 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~~---~~~~~l~~~a~~~~-~~vv~spNfSlGv~ll~~~~~~a----a~------~~~d 104 (219)
..+++-+.++|+|+|+.---|.. ++++.|+++|++.+ ++++++.-|+.|-.=-..+++.. .+ ++|+
T Consensus 440 ~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e~~~s~fk~LYd 519 (637)
T PLN02759 440 ARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKFLYP 519 (637)
T ss_pred HHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHhcCCCCccccCC
Confidence 55777778899999999888764 56788899999989 69999999999876554444332 21 1244
Q ss_pred eE--EE--------ecCC-CCCCCCcHHHHHHHHHHHhcC
Q 027747 105 VE--IV--------ESRP-NARDFPSPDATQIANNLSNLG 133 (219)
Q Consensus 105 ie--Ii--------E~Hh-~K~DaPSGTA~~la~~i~~~~ 133 (219)
.+ |. |+-. .+++ -|..|++=.+.+.+.|
T Consensus 520 ~~~sI~eKIetIAkeIYGAd~Ve-fS~~AkkqLk~ie~lG 558 (637)
T PLN02759 520 LDISIKEKIEAIAKESYGADGVE-YSEQAEAQIEMYTRQG 558 (637)
T ss_pred CCCCHHHHHHHHHHHccCCCceE-ECHHHHHHHHHHHHcC
Confidence 32 21 2222 2444 3678888777777754
No 168
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=55.49 E-value=20 Score=32.68 Aligned_cols=40 Identities=15% Similarity=0.028 Sum_probs=29.5
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHH---HHHHHHHcCCcEEEecC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYD---NVKQATAFGMRSVVYVP 57 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~---~~~~~~~~g~p~ViGTT 57 (219)
.+.+++. .+|+|||-|.-....- .=++|.+.++|+|.|.-
T Consensus 144 ~~~~li~------~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav 186 (318)
T TIGR03603 144 ELKDLLK------DYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFI 186 (318)
T ss_pred eHHHHhC------CCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEE
Confidence 4566664 6999999996655432 33899999999998854
No 169
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=55.28 E-value=44 Score=31.68 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=46.4
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhcC
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYK 103 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~~ 103 (219)
.||--+.|+++...++.| +-..|++-+.| ++..+.+-++|.+++.|++..+ +..+|++.++...+.+.-+
T Consensus 101 LIL~~~D~evl~aale~~-~~~kpLL~aAt---~eNyk~m~~lA~~y~~pl~v~s--p~Dln~lk~Ln~~l~~~Gv 170 (386)
T PF03599_consen 101 LILCGCDPEVLKAALEAC-AGKKPLLYAAT---EENYKAMAALAKEYGHPLIVSS--PIDLNLLKQLNIKLTELGV 170 (386)
T ss_dssp EEEESSHHHHHHHHHHHT-TTS--EEEEEB---TTTHHHHHHHHHHCT-EEEEE---SSCHHHHHHHHHHHHTTT-
T ss_pred EEEEeCCHHHHHHHHHHh-CcCCcEEeEcC---HHHHHHHHHHHHHcCCeEEEEe--cccHHHHHHHHHHHHhcCc
Confidence 566666788777666654 44567777777 4566778888888888887743 1678888888888876433
No 170
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=55.13 E-value=30 Score=30.89 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHH
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSA 66 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~ 66 (219)
.+.+.++++++++.|+. +|.|||| +|.++..+
T Consensus 20 ~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~ 57 (294)
T TIGR02313 20 EEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQ 57 (294)
T ss_pred HHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHH
Confidence 34566666666666665 3456666 44444433
No 171
>PRK15447 putative protease; Provisional
Probab=54.90 E-value=65 Score=28.96 Aligned_cols=72 Identities=10% Similarity=0.075 Sum_probs=51.4
Q ss_pred CHHHHHhcccCCCCCc-EEEE---------CCChhhHHHHHHHHHHcCCcEEEecCCC--ChhhHHHHHHHhhccCceEE
Q 027747 12 DLTMVLGSISQSKARA-VVID---------FTDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvID---------FS~p~~~~~~~~~~~~~g~p~ViGTTG~--~~~~~~~l~~~a~~~~~~vv 79 (219)
+++....++.+ ..+| |.+. || .+.+.+.++.+-+.|+.+++-|.-. .+++++.+.++.+. +...|
T Consensus 16 ~~~~~~~~~~~-~gaDaVY~g~~~~~~R~~f~-~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~-~~~~v 92 (301)
T PRK15447 16 TVRDFYQRAAD-SPVDIVYLGETVCSKRRELK-VGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVEN-GEFLV 92 (301)
T ss_pred CHHHHHHHHHc-CCCCEEEECCccCCCccCCC-HHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhc-CCCEE
Confidence 44444444333 2478 5554 76 4668999999999999999999885 36778888888754 45567
Q ss_pred EccChhH
Q 027747 80 IAPTLSI 86 (219)
Q Consensus 80 ~spNfSl 86 (219)
++.|++.
T Consensus 93 ~v~d~g~ 99 (301)
T PRK15447 93 EANDLGA 99 (301)
T ss_pred EEeCHHH
Confidence 7888775
No 172
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=54.73 E-value=84 Score=27.71 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHcCCcE--EEecCC
Q 027747 36 STVYDNVKQATAFGMRS--VVYVPH 58 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~--ViGTTG 58 (219)
+.+.++++++++.|+.= |.||||
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~~Gs~G 46 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVVVGTTG 46 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcCC
Confidence 45555556665555532 245554
No 173
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=54.40 E-value=12 Score=35.20 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=35.8
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHH-HHHHHcCCcEEEecC-CCChhhH
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNV-KQATAFGMRSVVYVP-HIQLETV 64 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~-~~~~~~g~p~ViGTT-G~~~~~~ 64 (219)
++..+++. ..|||.|.|.---+.-.+ ..|.-.|+|+|.|.- +|+ .|+
T Consensus 148 sNa~~Ii~------~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~E-GQL 196 (427)
T KOG2017|consen 148 SNAFDIIK------QYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWE-GQL 196 (427)
T ss_pred hhHHHHhh------ccceEEEcCCCccchhhhhhHHHHcCCccccccccccc-cee
Confidence 46667775 799999999876666555 788889999999976 553 443
No 174
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.35 E-value=89 Score=26.23 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=19.9
Q ss_pred CCcEEE-ECCChhhHHHHHHHHHHcCCcEEEec
Q 027747 25 ARAVVI-DFTDASTVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 25 ~~DVvI-DFS~p~~~~~~~~~~~~~g~p~ViGT 56 (219)
.+|.+| -...++.+.+.++.+.+.|+|+|.=-
T Consensus 57 ~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 57 KPDGIVVTIPDPDALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred CCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeC
Confidence 577444 33344445566777788888887643
No 175
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=53.92 E-value=84 Score=25.55 Aligned_cols=33 Identities=12% Similarity=-0.020 Sum_probs=21.3
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 58 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG 58 (219)
++|.+|=+........ ++.+.+.|+|+|.-.+.
T Consensus 55 ~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 55 RVDGIILAPSRLDDEL-LEELAALGIPVVLVDRP 87 (264)
T ss_pred CcCEEEEecCCcchHH-HHHHHHcCCCEEEeccc
Confidence 6886554443333333 88888999999876554
No 176
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=53.88 E-value=55 Score=28.03 Aligned_cols=93 Identities=13% Similarity=0.058 Sum_probs=49.8
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhcCC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKN 104 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~~d 104 (219)
.+|+++-.+ -..+...+..+.+.|+..-+...|++... ..+..+........+--+-..+|-..+..+.+.....-+.
T Consensus 190 ~~~~I~~~~-d~~a~g~~~al~~~g~~~dv~vvg~d~~~-~~~~~i~~~~~~tti~~~~~~~G~~a~~~l~~~~~g~~~~ 267 (288)
T cd01538 190 KVDGVLAAN-DGTAGGAIAALKAAGLAGKPPVTGQDAEL-AAVQRIVEGTQTMTVYKDIRELAEAAAELAVALLKGEKPP 267 (288)
T ss_pred CccEEEeCC-cHHHHHHHHHHHHcCCCCCceEEecCCCH-HHHHHHHhCCceEEEecCHHHHHHHHHHHHHHHhcCCCCC
Confidence 478777544 44557777888888887444445665532 2233222123344455566677776666555544332232
Q ss_pred eEEEecCCC-CCCCCc
Q 027747 105 VEIVESRPN-ARDFPS 119 (219)
Q Consensus 105 ieIiE~Hh~-K~DaPS 119 (219)
+-..-+-.+ |+|.||
T Consensus 268 ~~~~~~~~~~~~~~~~ 283 (288)
T cd01538 268 INDTKTYNNGKKDVPS 283 (288)
T ss_pred cchhhcccCCceEeee
Confidence 222222233 788886
No 177
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=53.76 E-value=31 Score=26.95 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=23.2
Q ss_pred HHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc
Q 027747 64 VSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY 102 (219)
Q Consensus 64 ~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~ 102 (219)
.++|.++| .+.++++-.|-.+.--++.++...+.++|
T Consensus 57 ~~~L~~A~--~~~GFf~l~nhGi~~elid~~~~~~~~FF 93 (120)
T PLN03176 57 CNKIVEAC--EEWGVFQIVDHGVDAKLVSEMTTLAKEFF 93 (120)
T ss_pred HHHHHHHH--HHCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 45667777 44566777777666666666666555544
No 178
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=53.43 E-value=37 Score=30.24 Aligned_cols=71 Identities=18% Similarity=0.128 Sum_probs=41.2
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHH----HcCCcEEEecCCCChhhHHHHHHHhhc--cCceEE--Ecc
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQAT----AFGMRSVVYVPHIQLETVSALSAFCDK--ASMGCL--IAP 82 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~----~~g~p~ViGTTG~~~~~~~~l~~~a~~--~~~~vv--~sp 82 (219)
.++++++. .+|+||=....+.+.+.++... ..+..+|.+|+|++++....+.+..+. ...|++ ..|
T Consensus 39 ~~~~~~~~------~advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp 112 (308)
T PRK14619 39 LSLAAVLA------DADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGP 112 (308)
T ss_pred CCHHHHHh------cCCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECC
Confidence 35777765 6898885554455555555443 335678888889987654333332211 123554 677
Q ss_pred ChhHH
Q 027747 83 TLSIG 87 (219)
Q Consensus 83 NfSlG 87 (219)
+++--
T Consensus 113 ~~a~e 117 (308)
T PRK14619 113 NLSKE 117 (308)
T ss_pred CcHHH
Confidence 76633
No 179
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=53.36 E-value=26 Score=34.93 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=57.6
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC-hhHHHHHH
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT-LSIGSILL 91 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN-fSlGv~ll 91 (219)
.+|=+++-..+++..++..+.|+....-.-|+++++.+.+++.-....+++++|.| |..|++--
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKp 297 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKP 297 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCC
Confidence 58888888889999999999999999999999999999998887778999999998 88888763
No 180
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=53.33 E-value=49 Score=29.88 Aligned_cols=70 Identities=6% Similarity=-0.021 Sum_probs=47.0
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChh------h-HHHHHHHhhcc--CceEEEc
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE------T-VSALSAFCDKA--SMGCLIA 81 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~------~-~~~l~~~a~~~--~~~vv~s 81 (219)
++.++|....+ .+.- ..+++.+.+.+...++.|.+.+.|+++.++-.... . ...++.++++. ++||.+=
T Consensus 5 ~~~~~l~~A~~-~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lH 83 (293)
T PRK07315 5 SAEKFVQAARD-NGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIH 83 (293)
T ss_pred cHHHHHHHHHH-CCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEE
Confidence 34555543211 2333 47889999999999999999999999998653221 1 23356677777 6788874
Q ss_pred c
Q 027747 82 P 82 (219)
Q Consensus 82 p 82 (219)
=
T Consensus 84 L 84 (293)
T PRK07315 84 L 84 (293)
T ss_pred C
Confidence 3
No 181
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=53.19 E-value=1.1e+02 Score=24.42 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=20.5
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 58 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG 58 (219)
.+|.+|=+............+.+.++|+|.-.+.
T Consensus 58 ~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~ 91 (269)
T cd01391 58 GVDGIIGPPSSSSALAVVELAAAAGIPVVSLDAT 91 (269)
T ss_pred CCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCC
Confidence 5676665555444444566677777777765443
No 182
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=53.11 E-value=23 Score=32.47 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=33.4
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhH-HHHHHHHHHcCCcEEEecCCCCh
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~-~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
+++++++ .+|||+|-+.--.. .-.-..|.++++|+|-+..||+-
T Consensus 101 ~l~~li~------~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~aalGfdg 145 (307)
T cd01486 101 RLEELIK------DHDVIFLLTDSRESRWLPTLLSAAKNKLVINAALGFDS 145 (307)
T ss_pred HHHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCcEEEEEeccce
Confidence 3566775 69999999966544 33447888999999998888863
No 183
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=53.09 E-value=67 Score=26.69 Aligned_cols=65 Identities=14% Similarity=-0.006 Sum_probs=44.7
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHH
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 88 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv 88 (219)
+++.+++. .+|++|--|..+...-.+-.|+..|+|+|..-.|... +...+...++++.++-.-..
T Consensus 255 ~~~~~~~~------~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~~~~-------e~i~~~~~g~~~~~~~~~~~ 319 (353)
T cd03811 255 SNPYPYLK------AADLFVLSSRYEGFPNVLLEAMALGTPVVATDCPGPR-------EILEDGENGLLVPVGDEAAL 319 (353)
T ss_pred CCHHHHHH------hCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCCChH-------HHhcCCCceEEECCCCHHHH
Confidence 35566665 5899998888777777788899999999875555332 22333556777777655543
No 184
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=52.97 E-value=56 Score=29.51 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=47.4
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hhH-HHHHHHhhccCceEEE
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ETV-SALSAFCDKASMGCLI 80 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~~-~~l~~~a~~~~~~vv~ 80 (219)
++.++|... ....+- -.+++.+.+.+...++.|.+.+.|+++.++-..- +.+ ..++.++++.++||.+
T Consensus 5 ~~k~iL~~A-~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VPVal 79 (284)
T PRK12857 5 TVAELLKKA-EKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVPVAL 79 (284)
T ss_pred cHHHHHHHH-HHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 455555432 112344 3788899999999999999999999999874321 222 3356778888899887
No 185
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=52.94 E-value=37 Score=29.65 Aligned_cols=47 Identities=13% Similarity=0.059 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCcEEE--ecCC----CChhhHHHHHHHhhcc---CceEEE
Q 027747 34 DASTVYDNVKQATAFGMRSVV--YVPH----IQLETVSALSAFCDKA---SMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~Vi--GTTG----~~~~~~~~l~~~a~~~---~~~vv~ 80 (219)
..+.+.++++++++.|+.-|. |||| ++.++..++-+.+.+. ++|++.
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~ 71 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIA 71 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEE
No 186
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=52.89 E-value=23 Score=35.83 Aligned_cols=44 Identities=9% Similarity=0.001 Sum_probs=33.7
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHH-HHHHHHHHcCCcEEEecCCCCh
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVY-DNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~-~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
+++++++ .+|||+|-+.--... -.-..|.++++|+|.|.-||+-
T Consensus 441 ~l~~Li~------~~DvV~d~tDn~esR~L~n~~c~~~~kplI~aAlGfdg 485 (664)
T TIGR01381 441 RLEQLIK------DHDVVFLLLDSREARWLPTVLCSRHKKIAISAALGFDS 485 (664)
T ss_pred HHHHHHh------hCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEEeccce
Confidence 4556665 689999998665543 3448899999999999989864
No 187
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=52.87 E-value=42 Score=28.85 Aligned_cols=23 Identities=9% Similarity=0.291 Sum_probs=11.1
Q ss_pred CChhhHHHHHHHhhccCceEEEc
Q 027747 59 IQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 59 ~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
.+..++.+|.+..++.++++|+.
T Consensus 183 ps~~~l~~l~~~ik~~~v~~i~~ 205 (256)
T PF01297_consen 183 PSPKDLAELIKLIKENKVKCIFT 205 (256)
T ss_dssp S-HHHHHHHHHHHHHTT-SEEEE
T ss_pred CCHHHHHHHHHHhhhcCCcEEEe
Confidence 44455555555555555554443
No 188
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=52.29 E-value=33 Score=31.38 Aligned_cols=35 Identities=11% Similarity=-0.048 Sum_probs=26.7
Q ss_pred CCcEEEECCChhhHHH-HHHHHHHcCCcEEE-ecCCC
Q 027747 25 ARAVVIDFTDASTVYD-NVKQATAFGMRSVV-YVPHI 59 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~-~~~~~~~~g~p~Vi-GTTG~ 59 (219)
.+|+||+-........ .-++|.++++|+|. ||.|+
T Consensus 90 ~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~ 126 (312)
T cd01489 90 QFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGF 126 (312)
T ss_pred cCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcc
Confidence 6899998866554444 55889999999998 66676
No 189
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=51.64 E-value=45 Score=30.17 Aligned_cols=56 Identities=9% Similarity=0.100 Sum_probs=41.3
Q ss_pred CCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hh-HHHHHHHhhccCceEEE
Q 027747 25 ARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ET-VSALSAFCDKASMGCLI 80 (219)
Q Consensus 25 ~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~-~~~l~~~a~~~~~~vv~ 80 (219)
..- -.+++.+.+.+...++.|.+.+.|+++.++-..- +. ...++.++++.++||.+
T Consensus 17 ~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~l 79 (283)
T PRK07998 17 HVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSL 79 (283)
T ss_pred CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 344 3788889999999999999999999998864221 22 23456777888888876
No 190
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=51.53 E-value=66 Score=29.04 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=47.8
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hhH-HHHHHHhhccCceEEE
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ETV-SALSAFCDKASMGCLI 80 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~~-~~l~~~a~~~~~~vv~ 80 (219)
++.++|... +...+- -..++.+.+.+...++.|.+.+.|+++.++-+.- +.+ ..++.++++.++||.+
T Consensus 5 ~~~~~l~~A-~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VPVal 79 (284)
T PRK12737 5 STKNMLKKA-QAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIPLAL 79 (284)
T ss_pred cHHHHHHHH-HHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 455555432 112344 3788899999999999999999999998874322 222 3366778888999987
No 191
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=51.39 E-value=32 Score=30.27 Aligned_cols=40 Identities=8% Similarity=0.042 Sum_probs=23.1
Q ss_pred CCChhhH-HHHHHHHHHcCCcEEEecCCCChhhHHHHHHHh
Q 027747 32 FTDASTV-YDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 32 FS~p~~~-~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a 71 (219)
..+.+.. ...++++.+.|+|+|+.|-+-+.+++++.-+..
T Consensus 95 IaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~ 135 (241)
T PF03102_consen 95 IASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVL 135 (241)
T ss_dssp E-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHH
T ss_pred eccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHH
Confidence 3344433 567788999999999988888877766644443
No 192
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=51.25 E-value=29 Score=27.06 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=42.1
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++.+++. .+|++|=.|..+..--.+..|+..|+|+|+-.+|... +.......++++.++
T Consensus 85 ~l~~~~~------~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~-------e~~~~~~~g~~~~~~ 143 (172)
T PF00534_consen 85 ELDELYK------SSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNN-------EIINDGVNGFLFDPN 143 (172)
T ss_dssp HHHHHHH------HTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHH-------HHSGTTTSEEEESTT
T ss_pred ccccccc------cceeccccccccccccccccccccccceeeccccCCc-------eeeccccceEEeCCC
Confidence 5666776 5899999999999999999999999999976655433 333334467888887
No 193
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=51.21 E-value=31 Score=33.65 Aligned_cols=92 Identities=16% Similarity=0.306 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCcEEEecCCCC---hhhHHHHHHHhhccCceEEEccChhHHHH----HHHHHHHHHhh------hcCCe
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQ---LETVSALSAFCDKASMGCLIAPTLSIGSI----LLQQAAISASF------HYKNV 105 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~---~~~~~~l~~~a~~~~~~vv~spNfSlGv~----ll~~~~~~aa~------~~~di 105 (219)
..+++-..++|+|+|+.---|. +++++.|+++|++.+++++.|--|+.|-- |-.+.+..+.+ ++||+
T Consensus 359 ~~Hi~Nikkfgvp~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~~~~~~f~~lYd~ 438 (554)
T COG2759 359 LKHIENIKKFGVPVVVAINKFPTDTEAEIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIEQNDSEFKRLYDV 438 (554)
T ss_pred HHHHHHHHHcCCCeEEEeccCCCCCHHHHHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHhCCcccceeeccc
Confidence 4455566689999999976654 46788899999999999999999988643 33444444332 12665
Q ss_pred EE----------EecCC-CCCCCCcHHHHHHHHHHHh
Q 027747 106 EI----------VESRP-NARDFPSPDATQIANNLSN 131 (219)
Q Consensus 106 eI----------iE~Hh-~K~DaPSGTA~~la~~i~~ 131 (219)
+. .|+-. .+.+. |-.|++=-+.+.+
T Consensus 439 ~~~i~~Ki~~I~~~iYga~~v~~-s~~A~~ql~~~~~ 474 (554)
T COG2759 439 EDPIEEKIEKIAKEIYGADGVEF-SPKAKEQLKTFEK 474 (554)
T ss_pred CCcHHHHHHHHHHHhcCCcceee-CHHHHHHHHHHHH
Confidence 42 23323 35554 4456655555555
No 194
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=51.12 E-value=38 Score=30.46 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=36.7
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hh-HHHHHHHhhccCceEEE
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ET-VSALSAFCDKASMGCLI 80 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~-~~~l~~~a~~~~~~vv~ 80 (219)
.++..+.+.+...++.|.+.+.|+++.+.-... +. ...++.++++.++||.+
T Consensus 17 AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VPV~l 74 (276)
T cd00947 17 AFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVPVAL 74 (276)
T ss_pred EEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 677778888888888888888888888753221 11 23455667777888876
No 195
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=50.63 E-value=65 Score=28.90 Aligned_cols=56 Identities=9% Similarity=0.121 Sum_probs=42.3
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh------h-hHHHHHHHhhccC-ceEEEccC
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL------E-TVSALSAFCDKAS-MGCLIAPT 83 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~------~-~~~~l~~~a~~~~-~~vv~spN 83 (219)
-.+++.+.+.+...++.|.+.+.|+++.++-..- + -.+.+++++++.+ +||++--.
T Consensus 19 ~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlD 82 (282)
T TIGR01859 19 GAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLD 82 (282)
T ss_pred EEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECC
Confidence 3788999999999999999999999998753221 1 1234567787777 89887643
No 196
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=50.48 E-value=33 Score=31.78 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=34.7
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHh
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a 71 (219)
+|||+.++.+.+..+.|.+.|-=.|++ .|.+++.++++.+.+
T Consensus 59 vIDl~~~~~~~~l~~Ac~~~GFF~vvn-HGI~~~l~~~~~~~~ 100 (358)
T PLN02254 59 VIDLSDPNALTLIGHACETWGVFQVTN-HGIPLSLLDDIESQT 100 (358)
T ss_pred eEeCCCHHHHHHHHHHHHHCCEEEEEc-CCCCHHHHHHHHHHH
Confidence 899999888888889999999988887 788877666666554
No 197
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=50.47 E-value=24 Score=28.98 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=41.5
Q ss_pred CCCc---EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHH----HHHHHhhccCceEEEcc
Q 027747 24 KARA---VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVS----ALSAFCDKASMGCLIAP 82 (219)
Q Consensus 24 ~~~D---VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~----~l~~~a~~~~~~vv~sp 82 (219)
.++| +|+|-|+.+--...+....+.|+|+|+.-+=++..... ..+.+++.-++|++..+
T Consensus 77 ~~~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~s 142 (156)
T PF02421_consen 77 EKPDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVS 142 (156)
T ss_dssp TSSSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEB
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEE
Confidence 3688 47888988888888888999999999998766543221 23555666678877543
No 198
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=50.42 E-value=36 Score=30.05 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=36.6
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
=+.||-.+|+++...++ .|.++|==.+|+.. +++-.++++++.|+|+-++
T Consensus 77 plsiDT~~~~vi~~al~----~G~~iINsis~~~~---~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 77 PISVDTYRAEVARAALE----AGADIINDVSGGQD---PAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred eEEEeCCCHHHHHHHHH----cCCCEEEECCCCCC---chhHHHHHHcCCcEEEEeC
Confidence 38999999988665554 49999999999852 2444556667888888664
No 199
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=50.36 E-value=37 Score=29.77 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=29.7
Q ss_pred HHHHHcCCcEE--EecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 43 KQATAFGMRSV--VYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 43 ~~~~~~g~p~V--iGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+.+++.|...+ =||+|.+++....+-+..++..+|+++=
T Consensus 26 ~~~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilf 66 (232)
T PRK04169 26 EAICESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILF 66 (232)
T ss_pred HHHHhcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEe
Confidence 67778877654 4899999988887766666688999863
No 200
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=50.33 E-value=1.1e+02 Score=25.70 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=20.4
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEEec
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGT 56 (219)
.+|.+|=++ .++...+.++.+.+.|+|+|.--
T Consensus 56 ~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~ 88 (270)
T cd06308 56 GVDLLIISPNEAAPLTPVVEEAYRAGIPVILLD 88 (270)
T ss_pred CCCEEEEecCchhhchHHHHHHHHCCCCEEEeC
Confidence 678655333 33444566777788899988543
No 201
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=50.31 E-value=33 Score=32.85 Aligned_cols=50 Identities=4% Similarity=-0.045 Sum_probs=41.1
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEE-----------ecCCCChhhH-HHHHHHhhccCceE
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVV-----------YVPHIQLETV-SALSAFCDKASMGC 78 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~Vi-----------GTTG~~~~~~-~~l~~~a~~~~~~v 78 (219)
-|-=.+|.++...++.+.+.+.|+.| |=|||++.++ +.+.+.|++.+.|.
T Consensus 18 SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVdq~GGYTGmtP~dF~~~V~~iA~~~gf~~ 79 (421)
T PRK15052 18 SVCSAHPLVIEAALAFDLNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVYGIADKVGFPR 79 (421)
T ss_pred eECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCCh
Confidence 45567899999999999999999998 7899999886 45677787777764
No 202
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=50.10 E-value=1e+02 Score=27.21 Aligned_cols=80 Identities=13% Similarity=0.114 Sum_probs=44.6
Q ss_pred ChhhHHHHHHHHHHcCC-cEEE---ecCCC-C--h--hhHHHHHHHhhccCceEEEccChhHHHHHHH-HHHHHHhhhcC
Q 027747 34 DASTVYDNVKQATAFGM-RSVV---YVPHI-Q--L--ETVSALSAFCDKASMGCLIAPTLSIGSILLQ-QAAISASFHYK 103 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~-p~Vi---GTTG~-~--~--~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~-~~~~~aa~~~~ 103 (219)
+++-....++++.+.|. .+++ ||+.| . . -++..|..+.+..+.||++=|--|.|.--+. .++..|...--
T Consensus 144 t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga 223 (260)
T TIGR01361 144 TIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGA 223 (260)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCC
Confidence 45556777777777766 4555 67666 1 1 2345555555545789988555666721111 11222222224
Q ss_pred CeEEEecCCC
Q 027747 104 NVEIVESRPN 113 (219)
Q Consensus 104 dieIiE~Hh~ 113 (219)
+--++|.|..
T Consensus 224 ~gl~iE~H~t 233 (260)
T TIGR01361 224 DGLMIEVHPD 233 (260)
T ss_pred CEEEEEeCCC
Confidence 5569999973
No 203
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=50.03 E-value=1e+02 Score=26.94 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=42.7
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCCh-hhHHHHH------HHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDA-STVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p-~~~~~~~------~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
++.+.+++++++. .+|+||-.... ..+...+ ..++..|.-+|-.+| .++....++.+.++++++.+
T Consensus 45 g~~~~~~~~e~~~------~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st-~~~~~~~~l~~~~~~~g~~~ 117 (296)
T PRK11559 45 GAETASTAKAVAE------QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSS-IAPLASREIAAALKAKGIEM 117 (296)
T ss_pred CCeecCCHHHHHh------cCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCC-CCHHHHHHHHHHHHHcCCcE
Confidence 4556677888775 68988866543 3333332 112233444443444 55666667777776678888
Q ss_pred EEccCh
Q 027747 79 LIAPTL 84 (219)
Q Consensus 79 v~spNf 84 (219)
+-+|=|
T Consensus 118 ~d~pv~ 123 (296)
T PRK11559 118 LDAPVS 123 (296)
T ss_pred EEcCCC
Confidence 888743
No 204
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=49.95 E-value=54 Score=23.87 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=15.0
Q ss_pred cCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 48 FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 48 ~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
....+|+=..--++.-...+..+|+++++|+++-
T Consensus 26 gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~ 59 (82)
T PRK13602 26 GSVKEVVVAEDADPRLTEKVEALANEKGVPVSKV 59 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3334444444444433444444444444444433
No 205
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=49.02 E-value=70 Score=25.57 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=7.8
Q ss_pred HHHHHHHcCCcEEEecC
Q 027747 41 NVKQATAFGMRSVVYVP 57 (219)
Q Consensus 41 ~~~~~~~~g~p~ViGTT 57 (219)
+++..++.+--+|+++.
T Consensus 52 n~E~l~~l~PDlii~~~ 68 (195)
T cd01143 52 NVEKIVALKPDLVIVSS 68 (195)
T ss_pred CHHHHhccCCCEEEEcC
Confidence 34444444444554443
No 206
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=48.89 E-value=40 Score=30.40 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=8.2
Q ss_pred CCCCCcHHHHHHH
Q 027747 114 ARDFPSPDATQIA 126 (219)
Q Consensus 114 K~DaPSGTA~~la 126 (219)
+.|.|..|-.+|+
T Consensus 148 g~~l~~~~l~~L~ 160 (309)
T cd00952 148 KFDFPRAAWAELA 160 (309)
T ss_pred CCCCCHHHHHHHh
Confidence 6676666666655
No 207
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=48.86 E-value=14 Score=33.05 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=20.0
Q ss_pred cCCcEEEecCC----CChhhHHHHHHHhhccCceEEEc
Q 027747 48 FGMRSVVYVPH----IQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 48 ~g~p~ViGTTG----~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
.+-.+.||+|| |+++-++.+.+.+ .-|||++
T Consensus 105 ~kptvlIG~S~~~g~ft~evv~~Ma~~~---~~PIIFa 139 (254)
T cd00762 105 AKPDFLIGVSRVGGAFTPEVIRAXAEIN---ERPVIFA 139 (254)
T ss_pred hCCCEEEEeCCCCCCCCHHHHHHHhhcC---CCCEEEE
Confidence 47778888887 7775555554443 3477775
No 208
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=48.80 E-value=48 Score=29.97 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHcCCcEEEec---CCCChhhHHHHHHHhhccCc-eEEEccChhHH
Q 027747 36 STVYDNVKQATAFGMRSVVYV---PHIQLETVSALSAFCDKASM-GCLIAPTLSIG 87 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGT---TG~~~~~~~~l~~~a~~~~~-~vv~spNfSlG 87 (219)
+.+.++++.+.+.|+++-+-| ++.+.+++..+-+++.+.++ .+.++|.++.|
T Consensus 149 ~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 149 DRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 456788999999999987765 47788888888888877777 67778877655
No 209
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=48.69 E-value=37 Score=31.85 Aligned_cols=69 Identities=10% Similarity=0.135 Sum_probs=48.4
Q ss_pred cCHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhh----------------------HHHH
Q 027747 11 SDLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET----------------------VSAL 67 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~----------------------~~~l 67 (219)
.++.++|... .....- ..+++.+.+.+...++.|.+.+.|+++.++-..... ...+
T Consensus 13 ~~~~~lL~~A-~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v 91 (357)
T TIGR01520 13 DDVHKLFQYA-KENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHV 91 (357)
T ss_pred HHHHHHHHHH-HHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHH
Confidence 3556666532 223444 478999999999999999999999999986543221 1245
Q ss_pred HHHhhccCceEEE
Q 027747 68 SAFCDKASMGCLI 80 (219)
Q Consensus 68 ~~~a~~~~~~vv~ 80 (219)
+.++++.++||++
T Consensus 92 ~~~Ae~a~VPVal 104 (357)
T TIGR01520 92 HSIAEHYGVPVVL 104 (357)
T ss_pred HHHHHHCCCCEEE
Confidence 6677778888886
No 210
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=48.29 E-value=1.3e+02 Score=25.11 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=22.1
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEE
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~Vi 54 (219)
.+|.+|=+. .++.+.+.++.+.+.|+|+|.
T Consensus 60 ~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~ 90 (274)
T cd06311 60 KIDALVILPFESAPLTQPVAKAKKAGIFVVV 90 (274)
T ss_pred CCCEEEEeCCCchhhHHHHHHHHHCCCeEEE
Confidence 689655443 456667778888899999986
No 211
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=48.15 E-value=40 Score=32.34 Aligned_cols=50 Identities=6% Similarity=-0.009 Sum_probs=41.8
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEE-----------ecCCCChhhH-HHHHHHhhccCceE
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVV-----------YVPHIQLETV-SALSAFCDKASMGC 78 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~Vi-----------GTTG~~~~~~-~~l~~~a~~~~~~v 78 (219)
-|-=.+|.++...++.+.+.+.|+.| |=|||++.++ +.+.+.|++.+.|.
T Consensus 21 sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~ 82 (426)
T PRK15458 21 AVCSAHPLVLEAAIRYALANDSPLLIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQ 82 (426)
T ss_pred EecCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCCh
Confidence 56677899999999999999999998 8899999886 45677787777764
No 212
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors. This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va
Probab=47.84 E-value=40 Score=27.97 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=31.9
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCC---cEEEecCCCCh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGM---RSVVYVPHIQL 61 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~---p~ViGTTG~~~ 61 (219)
.++|+|+|..++.+...++.+.+.|. -..+.++.|..
T Consensus 195 ~~~viv~~~~~~~~~~~l~~a~~~g~~~~~~~i~~~~~~~ 234 (298)
T cd06269 195 TARVIVVFSSEEDALRLLEEAVELGMMTGYHWIITDLWLT 234 (298)
T ss_pred CCcEEEEEechHHHHHHHHHHHHcCCCCCeEEEEEChhhc
Confidence 46999999999999999999999987 77888887754
No 213
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=47.82 E-value=49 Score=29.00 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=17.8
Q ss_pred hhhHHHHHHHHHHcCCcE--EEecCC----CChhhHHHH
Q 027747 35 ASTVYDNVKQATAFGMRS--VVYVPH----IQLETVSAL 67 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~--ViGTTG----~~~~~~~~l 67 (219)
.+.+.++++++++.|+.- |.|||| ++.++..++
T Consensus 20 ~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l 58 (284)
T cd00950 20 FDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAV 58 (284)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHH
Confidence 455666666666666543 346664 444444443
No 214
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=47.81 E-value=28 Score=32.16 Aligned_cols=86 Identities=16% Similarity=0.065 Sum_probs=55.8
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChh--hH-----HHHHHHhhccCce
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE--TV-----SALSAFCDKASMG 77 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~--~~-----~~l~~~a~~~~~~ 77 (219)
.++.+..++++++. .+|+|++.|-...-..+.+.+.+.|.+.|+=+ |-+.+ +. -.-+++.. + -
T Consensus 61 ~~l~v~g~~eeLl~------~vDiVve~Tp~~~~~~na~~~~~~GakaVl~~-~p~~~~~~~tfv~gvN~~~~~~-~--~ 130 (333)
T TIGR01546 61 AGIEVAGTLEDLLE------KVDIVVDATPGGIGAKNKPLYEKAGVKAIFQG-GEKAEVADVSFVAQANYEAALG-K--D 130 (333)
T ss_pred CceEecCCHHHHhh------cCCEEEECCCCCCChhhHHHHHhCCcCEEEEC-CCCCCCCCceEEeeeCHHHcCc-C--c
Confidence 35677888999985 69999999876777888888888887665532 22221 00 00112211 1 1
Q ss_pred EEEccChhHHHHHHHHHHHHHhhhc
Q 027747 78 CLIAPTLSIGSILLQQAAISASFHY 102 (219)
Q Consensus 78 vv~spNfSlGv~ll~~~~~~aa~~~ 102 (219)
+.+|-|---|-|..+++.+-+.|
T Consensus 131 --~vs~aSCtTn~Lap~~~~L~~~f 153 (333)
T TIGR01546 131 --YVRVVSCNTTGLVRTLNAINDYS 153 (333)
T ss_pred --eEEecCchHhhHHHHHHHHHHhc
Confidence 44777877888888888777654
No 215
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=47.76 E-value=53 Score=30.60 Aligned_cols=31 Identities=6% Similarity=0.144 Sum_probs=28.2
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCC
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPH 58 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG 58 (219)
..+++.+.+.+...++.|.+.+.|+++.++-
T Consensus 16 ~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~ 46 (340)
T cd00453 16 PAVNCVGTDSINAVLETAAKVKAPVIVQFSN 46 (340)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 4789999999999999999999999998875
No 216
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=47.70 E-value=68 Score=29.22 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=21.3
Q ss_pred CChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 33 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 33 S~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
+.|+.....++..++.++.+|+|.. +...-..+...++++++|.+.
T Consensus 43 ~~p~~a~~~a~~Li~~~V~~vvG~~--~S~~~~Av~~~a~~~~vp~i~ 88 (347)
T TIGR03863 43 RTPEDLVAALKALLAQGVRFFVLDL--PAAALLALADAAKAKGALLFN 88 (347)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEecC--ChHHHHHHHHHHHhCCcEEEe
Confidence 3455555555555555555555532 112222333444445555554
No 217
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=47.62 E-value=74 Score=26.62 Aligned_cols=39 Identities=23% Similarity=0.189 Sum_probs=23.7
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.|+|.++. .+||+|+.++.... ....+...+.|+|+|.-
T Consensus 49 ~n~E~i~~-----l~PDlIi~~~~~~~-~~~~~~l~~~gipvv~~ 87 (235)
T cd01149 49 LSAEGVLS-----LKPTLVIASDEAGP-PEALDQLRAAGVPVVTV 87 (235)
T ss_pred cCHHHhhc-----cCCCEEEEcCCCCC-HHHHHHHHHcCCeEEEe
Confidence 47777776 36888777553321 24445556777777653
No 218
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=47.42 E-value=1.2e+02 Score=28.01 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=38.2
Q ss_pred HHhcccCCCCCcEEE-ECC----Chh-hHHHHHHHHHH--cCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHH
Q 027747 16 VLGSISQSKARAVVI-DFT----DAS-TVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 16 ~l~~~~~~~~~DVvI-DFS----~p~-~~~~~~~~~~~--~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
+|+.+.+....|+++ -++ .++ .....++.+.+ .++|+|+..+|-..+ ...+.-++.++|+.+-++..-.
T Consensus 301 aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~~g~~~~---~~~~~L~~~Gi~ip~f~~pe~A 377 (388)
T PRK00696 301 AFKIILSDPNVKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLEGTNVE---LGKKILAESGLNIIAADTLDDA 377 (388)
T ss_pred HHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCCCHH---HHHHHHHHCCCCceecCCHHHH
Confidence 333333335678544 222 222 23334444444 689999999883332 2233223467565555555555
Q ss_pred HHHHHHH
Q 027747 88 SILLQQA 94 (219)
Q Consensus 88 v~ll~~~ 94 (219)
+.-+.++
T Consensus 378 ~~al~~~ 384 (388)
T PRK00696 378 AQKAVEA 384 (388)
T ss_pred HHHHHHH
Confidence 5444433
No 219
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=47.37 E-value=33 Score=30.58 Aligned_cols=13 Identities=0% Similarity=-0.043 Sum_probs=6.7
Q ss_pred CCCCCcHHHHHHH
Q 027747 114 ARDFPSPDATQIA 126 (219)
Q Consensus 114 K~DaPSGTA~~la 126 (219)
+.|.|..+-.+|+
T Consensus 141 g~~l~~~~i~~L~ 153 (290)
T TIGR00683 141 GVNMGIEQFGELY 153 (290)
T ss_pred ccCcCHHHHHHHh
Confidence 5555555555444
No 220
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=47.34 E-value=61 Score=29.13 Aligned_cols=68 Identities=10% Similarity=0.176 Sum_probs=48.3
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hh-HHHHHHHhhccCceEEE
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ET-VSALSAFCDKASMGCLI 80 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~-~~~l~~~a~~~~~~vv~ 80 (219)
++.++|... .....- ...++.+.+.+...++.|.+.+.|+++.++-... +. ...+..++++.++||.+
T Consensus 5 ~~~~~l~~A-~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vpv~l 79 (281)
T PRK06806 5 QMKELLKKA-NQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVPVAV 79 (281)
T ss_pred cHHHHHHHH-HHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCCEEE
Confidence 344555431 113444 3788999999999999999999999999875332 11 14566778888999887
No 221
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=47.19 E-value=63 Score=29.61 Aligned_cols=53 Identities=6% Similarity=0.151 Sum_probs=39.7
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChh------hHHHHHHHhhccC-ceEEE
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE------TVSALSAFCDKAS-MGCLI 80 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~------~~~~l~~~a~~~~-~~vv~ 80 (219)
-..++.+.+.+...++.|.+.+.|+++.++-.... -...++.++++.. +||.+
T Consensus 20 ~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~VPVal 79 (307)
T PRK05835 20 GAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVAL 79 (307)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCCCeEEE
Confidence 37888899999999999999999999998643221 1234556677775 88887
No 222
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=47.17 E-value=1.3e+02 Score=26.39 Aligned_cols=59 Identities=17% Similarity=0.114 Sum_probs=39.3
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCC--cEEEecCCCChhhHHHHHHHh
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM--RSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~--p~ViGTTG~~~~~~~~l~~~a 71 (219)
|....+.++.+ .+||+|+=.+.+......++.+.+.|. |++++.++++++-++.+.+++
T Consensus 176 d~~~~~~~i~~-~~pdaV~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~ 236 (341)
T cd06341 176 DPTPQAQQAAA-AGADAIITVLDAAVCASVLKAVRAAGLTPKVVLSGTCYDPALLAAPGPAL 236 (341)
T ss_pred CHHHHHHHHHh-cCCCEEEEecChHHHHHHHHHHHHcCCCCCEEEecCCCCHHHHHhcCccc
Confidence 44444443322 369999977777788899999999876 677787888765333343333
No 223
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=47.16 E-value=47 Score=29.97 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=40.8
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hh-HHHHHHHhhccCceEEE
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ET-VSALSAFCDKASMGCLI 80 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~-~~~l~~~a~~~~~~vv~ 80 (219)
-.+++.+.+.+...++.|.+.+.|+++..+-..- +. ...++.++++.++||.+
T Consensus 19 ~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPVal 77 (282)
T TIGR01858 19 PAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLAL 77 (282)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 3788889999999999999999999998753221 22 23456678888899987
No 224
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=47.10 E-value=1.1e+02 Score=26.60 Aligned_cols=31 Identities=10% Similarity=0.244 Sum_probs=22.8
Q ss_pred CCCc-EEEECCChhhHHHHHHHHHHcCCcEEE
Q 027747 24 KARA-VVIDFTDASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 24 ~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~Vi 54 (219)
..+| ++|.-+.++.+.+.++.+.+.|+|+|+
T Consensus 56 ~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~ 87 (303)
T cd01539 56 KGVDLLAVNLVDPTAAQTVINKAKQKNIPVIF 87 (303)
T ss_pred cCCCEEEEecCchhhHHHHHHHHHHCCCCEEE
Confidence 3688 455555666677788888888999886
No 225
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=46.96 E-value=1.2e+02 Score=27.24 Aligned_cols=101 Identities=11% Similarity=-0.003 Sum_probs=53.8
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCc-EEEecCC-CChhhHHHHHHHhhccCceEEEccChh--HHHHHHHHHHHHHh
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPH-IQLETVSALSAFCDKASMGCLIAPTLS--IGSILLQQAAISAS 99 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p-~ViGTTG-~~~~~~~~l~~~a~~~~~~vv~spNfS--lGv~ll~~~~~~aa 99 (219)
.+||+|+=...+......++.+.+.|.+ .++|+++ .++.-.+.+.+.+ .++ +.+..++ ...-...++.+...
T Consensus 194 ~~pd~V~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~--~g~--~~~~~~~~~~~~p~~~~f~~~~~ 269 (351)
T cd06334 194 SGPDYVILWGWGVMNPVAIKEAKRVGLDDKFIGNWWSGDEEDVKPAGDAA--KGY--KGVTPFAGGADDPVGKEIVKEVY 269 (351)
T ss_pred cCCCEEEEecccchHHHHHHHHHHcCCCceEEEeeccCcHHHHHHhhhhh--cCc--EEeecccCCCCchHHHHHHHHHH
Confidence 3699988887887778889999888774 3445444 4433233344444 343 3332222 23334455555554
Q ss_pred hhcCCeEEEecCCCCCCCCcH-------HHHHHHHHHHhcCc
Q 027747 100 FHYKNVEIVESRPNARDFPSP-------DATQIANNLSNLGQ 134 (219)
Q Consensus 100 ~~~~dieIiE~Hh~K~DaPSG-------TA~~la~~i~~~~~ 134 (219)
+.+.+ ..++.+.||- ++..+++.|.+.+.
T Consensus 270 ~~~~~------~~~~~~~~~~~~~~gy~a~~~l~~Al~~ag~ 305 (351)
T cd06334 270 DKGKG------SGNDKEIGSVYYNRGVVNAMIMVEAIRRAQE 305 (351)
T ss_pred HccCC------CCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44311 1112233332 46777777777553
No 226
>PRK07714 hypothetical protein; Provisional
Probab=46.81 E-value=71 Score=23.93 Aligned_cols=9 Identities=11% Similarity=0.136 Sum_probs=3.7
Q ss_pred HHHcCCcEE
Q 027747 45 ATAFGMRSV 53 (219)
Q Consensus 45 ~~~~g~p~V 53 (219)
|..+++|++
T Consensus 56 ~~~~~vp~~ 64 (100)
T PRK07714 56 CTYYNVPMR 64 (100)
T ss_pred HHhcCCCEE
Confidence 334444443
No 227
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=46.74 E-value=25 Score=33.72 Aligned_cols=71 Identities=7% Similarity=0.132 Sum_probs=50.1
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY 102 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~ 102 (219)
..+|+.+|| .....+.++.+-+....+|+|-.+... . -+.+-++.++|.+..+ | +|+.-..++++.+++++
T Consensus 233 Gi~v~~~~s-g~~t~~~i~~~~~A~lniv~~~~~~~~--~--A~~Le~~fGiP~~~~~-~-~Gi~~T~~~Lr~ia~~~ 303 (466)
T TIGR01282 233 GLRVVAQWS-GDGTLNEMENAPKAKLNLIHCYRSMNY--I--SRHMEEKYGIPWMEYN-F-FGPTKIAESLRKIAEFF 303 (466)
T ss_pred CCeEEEEEC-CCCCHHHHHhcccCCEEEEEChHHHHH--H--HHHHHHHhCCceEeCC-C-CCHHHHHHHHHHHHHHH
Confidence 567778887 455677777778888888887543311 1 1122345799999875 6 99999999999988876
No 228
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=46.58 E-value=40 Score=31.54 Aligned_cols=68 Identities=4% Similarity=0.106 Sum_probs=47.5
Q ss_pred CHHHHHhcccCCCCCcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhh---------------------HHHHHH
Q 027747 12 DLTMVLGSISQSKARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET---------------------VSALSA 69 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~---------------------~~~l~~ 69 (219)
++.++|... .....-| ..++.+.+.+...++.|.+.+.|+++.++-..... .+.++.
T Consensus 8 ~~k~~L~~A-~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~ 86 (350)
T PRK09197 8 DYQEMFDRA-KENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHE 86 (350)
T ss_pred HHHHHHHHH-HHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHH
Confidence 455555431 1124443 78899999999999999999999999986432211 134567
Q ss_pred HhhccCceEEE
Q 027747 70 FCDKASMGCLI 80 (219)
Q Consensus 70 ~a~~~~~~vv~ 80 (219)
++++.++||.+
T Consensus 87 ~A~~~~VPVal 97 (350)
T PRK09197 87 VAEHYGVPVIL 97 (350)
T ss_pred HHHHCCCCEEE
Confidence 77888888886
No 229
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=46.57 E-value=43 Score=32.03 Aligned_cols=50 Identities=8% Similarity=0.088 Sum_probs=41.5
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEE-----------ecCCCChhhH-HHHHHHhhccCceE
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVV-----------YVPHIQLETV-SALSAFCDKASMGC 78 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~Vi-----------GTTG~~~~~~-~~l~~~a~~~~~~v 78 (219)
-|-=.+|.++...++.+.+.+.|+.| |=|||++.++ +.+.+.|++.+.|.
T Consensus 17 sVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~gf~~ 78 (420)
T TIGR02810 17 SVCSAHPLVLEAAIRRARASGTPVLIEATSNQVNQFGGYTGMTPADFRDFVETIADRIGFPR 78 (420)
T ss_pred EECCCCHHHHHHHHHHHhhcCCcEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCCh
Confidence 45667899999999999999999998 7899999886 45778787777774
No 230
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=46.40 E-value=83 Score=27.49 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=32.0
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHh
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a 71 (219)
..|+|.++. .+||+||..... -.+..+...+.|+|++.-.++..++-.+.++.++
T Consensus 81 ~~n~E~I~a-----l~PDlIi~~~~~--~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg 135 (289)
T TIGR03659 81 SPDMEKIKS-----LKPTVVLSVTTL--EEDLGPKFKQLGVEATFLNLTSVDGMKKSITELG 135 (289)
T ss_pred CCCHHHHhc-----cCCcEEEEcCcc--cHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHH
Confidence 468899887 479988875331 1234455567788887544432222334444444
No 231
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor. Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes
Probab=46.28 E-value=33 Score=32.38 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=32.4
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCc-EEEecCCCCh
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQL 61 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p-~ViGTTG~~~ 61 (219)
..+||||=|+.++.+...++.+.+.|+. ..|||.||..
T Consensus 231 ~~a~vVvl~~~~~~~~~ll~~a~~~g~~~~wigs~~~~~ 269 (458)
T cd06375 231 PNARVVVLFTRSEDARELLAAAKRLNASFTWVASDGWGA 269 (458)
T ss_pred CCCEEEEEecChHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 4689988888899899999999999886 6889999963
No 232
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=45.85 E-value=1.2e+02 Score=24.57 Aligned_cols=32 Identities=19% Similarity=0.033 Sum_probs=19.0
Q ss_pred CCcEEEECCC-hhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~-p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
++|.+|=++. +.... .++.+.+.++|+|..-+
T Consensus 55 ~~d~ii~~~~~~~~~~-~~~~l~~~~ip~v~~~~ 87 (264)
T cd01537 55 GVDGIIIAPSDLTAPT-IVKLARKAGIPVVLVDR 87 (264)
T ss_pred CCCEEEEecCCCcchh-HHHHhhhcCCCEEEecc
Confidence 5775554443 33333 57777778888876533
No 233
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=45.77 E-value=1.1e+02 Score=22.26 Aligned_cols=42 Identities=10% Similarity=0.069 Sum_probs=25.6
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 58 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG 58 (219)
..+.|+++. ..||+||....... ...+...+.|+|++....+
T Consensus 51 ~~~~E~l~~-----l~pDlvi~~~~~~~--~~~~~l~~~~i~~~~~~~~ 92 (148)
T cd00636 51 EPNLEKIAA-----LKPDLIIANGSGLE--AWLDKLSKIAIPVVVVDEA 92 (148)
T ss_pred CCCHHHHhc-----cCCCEEEEecccch--hHHHHHHHhCCCEEEECCC
Confidence 457777776 37887776553321 1445556667777776665
No 234
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=45.75 E-value=1.6e+02 Score=24.90 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=21.9
Q ss_pred CCCcEEEECC-ChhhHHHHHHHHHHcCCcEEEe
Q 027747 24 KARAVVIDFT-DASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 24 ~~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViG 55 (219)
..+|.+|=++ .++...+.++.+.+.|+|+|.=
T Consensus 54 ~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 54 QGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred cCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEe
Confidence 3678444343 4556677788888889998874
No 235
>PF06074 DUF935: Protein of unknown function (DUF935); InterPro: IPR009279 This entry is represented by Bacteriophage Mu, Gp29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu Gp29 protein Q9T1W5 from SWISSPROT.
Probab=45.70 E-value=43 Score=32.43 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHcCCcEEEecCCC--ChhhHHHHHHHhh--ccCceEEEccChhH
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCD--KASMGCLIAPTLSI 86 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~--~~~~~~~l~~~a~--~~~~~vv~spNfSl 86 (219)
.+...+.+|-.+|+|+++|+++- ++++++.|.++.. -.+..+++..++.|
T Consensus 222 ~~~~w~~f~E~yG~P~~vgky~~~a~~~e~~~L~~al~~~g~~a~~iip~~~~I 275 (516)
T PF06074_consen 222 GLKDWAEFLEKYGMPIRVGKYPPGASDEEKDALLRALANMGSDAAAIIPEGMEI 275 (516)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCCCCHHHHHHHHHHHHHhccCeEEEeCCCCeE
Confidence 34667888999999999999965 5566666654422 25566777776655
No 236
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=45.22 E-value=73 Score=27.52 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=24.0
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.|+|.++. .+||+||..+... ..+.++...+.|+|++.-
T Consensus 63 ~n~E~il~-----l~PDlVi~~~~~~-~~~~~~~L~~~gi~v~~~ 101 (260)
T PRK03379 63 MNLERIVA-----LKPDLVLAWRGGN-AERQVDQLASLGIKVMWV 101 (260)
T ss_pred CCHHHHHh-----cCCCEEEEecCCC-cHHHHHHHHHCCCCEEEe
Confidence 47777776 3788777654221 134455556777887764
No 237
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=45.15 E-value=61 Score=28.28 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=18.1
Q ss_pred CChhhHHHHHHHhhccCceEEE-ccChh
Q 027747 59 IQLETVSALSAFCDKASMGCLI-APTLS 85 (219)
Q Consensus 59 ~~~~~~~~l~~~a~~~~~~vv~-spNfS 85 (219)
.+..++.+|.+.+++.++++|+ .|+++
T Consensus 190 ps~~~l~~l~~~ik~~~v~~if~e~~~~ 217 (264)
T cd01020 190 PSPADIAAFQNAIKNRQIDALIVNPQQA 217 (264)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEeCCCCC
Confidence 3556777777777777777665 45554
No 238
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=45.09 E-value=1.2e+02 Score=26.82 Aligned_cols=71 Identities=13% Similarity=0.058 Sum_probs=38.9
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChh-hHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhccCceEE
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDAS-TVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~-~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv 79 (219)
.|+.+.++++++.... ..+|+||=...++ .+.+.++.... .| .+||=+|.-+++...++.+..+++++..+
T Consensus 42 ~g~~~~~s~~~~~~~~---~~advVi~~vp~~~~~~~v~~~i~~~l~~g-~ivid~st~~~~~~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 42 LGITARHSLEELVSKL---EAPRTIWVMVPAGEVTESVIKDLYPLLSPG-DIVVDGGNSRYKDDLRRAEELAERGIHYV 116 (299)
T ss_pred CCCeecCCHHHHHHhC---CCCCEEEEEecCchHHHHHHHHHhccCCCC-CEEEECCCCCchhHHHHHHHHHHcCCeEE
Confidence 3566677888887521 1368877666655 55665544332 33 35554444444454555555544555443
No 239
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.98 E-value=1.7e+02 Score=24.39 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=22.5
Q ss_pred CCCcEEE-ECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 24 KARAVVI-DFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 24 ~~~DVvI-DFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
..+|.+| .-..++...+.++.+.+.|+|+|.-
T Consensus 54 ~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~ 86 (277)
T cd06319 54 KGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIA 86 (277)
T ss_pred cCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEE
Confidence 3689664 4334455667888899999999853
No 240
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=44.56 E-value=48 Score=27.59 Aligned_cols=30 Identities=13% Similarity=0.003 Sum_probs=25.8
Q ss_pred CCChhhHHHHHHHHHHcCCc-EEEecCCCCh
Q 027747 32 FTDASTVYDNVKQATAFGMR-SVVYVPHIQL 61 (219)
Q Consensus 32 FS~p~~~~~~~~~~~~~g~p-~ViGTTG~~~ 61 (219)
+|+|+.+...++...+.|.. ++|+...+..
T Consensus 19 ~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~ 49 (206)
T PF04015_consen 19 TTHPEVVRAVVEMLKEAGAKEIIIAESPGSG 49 (206)
T ss_pred cCCHHHHHHHHHHHHHcCCCceEEEeCCCcc
Confidence 79999999999999999986 8888875553
No 241
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=44.09 E-value=60 Score=23.26 Aligned_cols=59 Identities=5% Similarity=0.035 Sum_probs=35.5
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHH----cCCcEEEecCCC---Ch-hhHHHHHHHhhccCceEEEccC
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATA----FGMRSVVYVPHI---QL-ETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~----~g~p~ViGTTG~---~~-~~~~~l~~~a~~~~~~vv~spN 83 (219)
++.|++||. +|+++...++...+ .++-+|+|..+- .. +....+.+++.+...-+++.+.
T Consensus 13 ~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~ 80 (91)
T PF02875_consen 13 GPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGD 80 (91)
T ss_dssp TEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETS
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCC
Confidence 578999996 46777666666644 345677786433 33 3346777777653444555443
No 242
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=44.07 E-value=45 Score=25.62 Aligned_cols=36 Identities=22% Similarity=0.040 Sum_probs=31.9
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
|+++|--++.+.+.+.+++|.++++|+.+-..|.+.
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~ 36 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSW 36 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTS
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCc
Confidence 467888899999999999999999999998888765
No 243
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.84 E-value=1.4e+02 Score=26.66 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCChhhHHHH
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQLETVSAL 67 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l 67 (219)
+.+....+.|.+.|+|++. |-++.++.+.+
T Consensus 66 ~gl~~L~~~~~~~Gl~~~T--ev~d~~~v~~~ 95 (250)
T PRK13397 66 QGIRYLHEVCQEFGLLSVS--EIMSERQLEEA 95 (250)
T ss_pred HHHHHHHHHHHHcCCCEEE--eeCCHHHHHHH
Confidence 4566666777777777764 66666665444
No 244
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=43.77 E-value=1.6e+02 Score=26.70 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=55.5
Q ss_pred CCcEEEECCCh---hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC-----hhHHHHHHHHHHH
Q 027747 25 ARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT-----LSIGSILLQQAAI 96 (219)
Q Consensus 25 ~~DVvIDFS~p---~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN-----fSlGv~ll~~~~~ 96 (219)
+.|++|=+|.- ..+...++.|.+.|.++|.=|.+ . .|.+++++++.+++.-|. +|++-.++. +..
T Consensus 66 ~~dlvI~iS~SG~t~e~~~a~~~A~~~g~~ii~iT~~-g-----~L~~~a~~~~~~~i~vP~~~~~R~s~~~~~~~-~l~ 138 (308)
T TIGR02128 66 GKTLLIAVSYSGNTEETLSAVEEAKKKGAKVIAITSG-G-----RLEEMAKERGLDVIKIPKGLQPRAAFPYLLTP-LIL 138 (308)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHcCCEEEEECCC-c-----HHHHHHHhcCCeEEEcCCCCCCeeeHHHHHHH-HHH
Confidence 46788888754 34556788899999986654432 1 477777767777776544 555433322 122
Q ss_pred HHhhhc-CCeEEEecCCCCCCCCc--HHHHHHHHHHHh
Q 027747 97 SASFHY-KNVEIVESRPNARDFPS--PDATQIANNLSN 131 (219)
Q Consensus 97 ~aa~~~-~dieIiE~Hh~K~DaPS--GTA~~la~~i~~ 131 (219)
.+...+ .|++-.+.+-...|.|+ -=|+.||..|..
T Consensus 139 ~l~~~~g~d~~~~~~~l~~~~~~~~~n~Ak~LA~~l~~ 176 (308)
T TIGR02128 139 MLIKPLGIDIEEAELLEGGLDTPKLKALAKRLAEEIYN 176 (308)
T ss_pred HHHHHcCCChHHHHHHhcCCccccccCHHHHHHHHhhC
Confidence 222211 23333222222333343 447888888776
No 245
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=43.57 E-value=1.8e+02 Score=23.71 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=20.5
Q ss_pred CCcEEEECCC-hhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~-p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|.+|=++. .+...+.++.+.+.++|+|.-.+
T Consensus 55 ~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~~~~ 88 (267)
T cd01536 55 GVDGIIISPVDSAALTPALKKANAAGIPVVTVDS 88 (267)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHHCCCcEEEecC
Confidence 6786554433 33334567777788888887543
No 246
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=43.54 E-value=89 Score=28.27 Aligned_cols=53 Identities=6% Similarity=-0.008 Sum_probs=38.7
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh------h-hHHHHHHHhhccC--ceEEE
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL------E-TVSALSAFCDKAS--MGCLI 80 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~------~-~~~~l~~~a~~~~--~~vv~ 80 (219)
..+++.+.+.+...++.|.+.+.|+++.++=..- + -...++.++++.+ +||++
T Consensus 21 ~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~l 82 (286)
T PRK08610 21 GQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAI 82 (286)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEE
Confidence 4788899999999999999999999998863221 1 1234556666666 68876
No 247
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=43.23 E-value=41 Score=30.90 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=35.3
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHh
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a 71 (219)
+||++.++...+..+.|.+.|.=.|++ .|.+.+-++++.+.+
T Consensus 29 vIDls~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~ 70 (335)
T PLN02156 29 VIDLTDSDAKTQIVKACEEFGFFKVIN-HGVRPDLLTQLEQEA 70 (335)
T ss_pred cccCCChHHHHHHHHHHHHCCEEEEEC-CCCCHHHHHHHHHHH
Confidence 799998888888889999999999998 489887777776655
No 248
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.15 E-value=1.8e+02 Score=24.14 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=23.1
Q ss_pred CCCcE-EEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 24 KARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 24 ~~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
..+|. +|.-+.++...+.++.+.+.|+|+|+--.
T Consensus 56 ~~~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~~~ 90 (271)
T cd06321 56 AKVDLILLNAVDSKGIAPAVKRAQAAGIVVVAVDV 90 (271)
T ss_pred hCCCEEEEeCCChhHhHHHHHHHHHCCCeEEEecC
Confidence 36885 44333445556778888899999987644
No 249
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=43.14 E-value=1.7e+02 Score=25.58 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=39.8
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCC-hhhHHHHH---HHHH---HcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNV---KQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~-p~~~~~~~---~~~~---~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+...+++++++. .+|+||-.-. +..+...+ +.+. ..+. +|+=+|..++....++.+.++++++.+
T Consensus 42 g~~~~~~~~~~~~------~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~-iivd~st~~~~~~~~l~~~l~~~g~~~ 114 (291)
T TIGR01505 42 GAVTAETARQVTE------QADVIFTMVPDSPQVEEVAFGENGIIEGAKPGK-TLVDMSSISPIESKRFAKAVKEKGIDY 114 (291)
T ss_pred CCcccCCHHHHHh------cCCEEEEecCCHHHHHHHHcCcchHhhcCCCCC-EEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence 4445567777775 6898775433 23444443 1122 2333 444444455666567777776677777
Q ss_pred EEcc
Q 027747 79 LIAP 82 (219)
Q Consensus 79 v~sp 82 (219)
+-+|
T Consensus 115 ~~~p 118 (291)
T TIGR01505 115 LDAP 118 (291)
T ss_pred EecC
Confidence 7776
No 250
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.10 E-value=1.7e+02 Score=24.53 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=21.0
Q ss_pred CCCcEEEECC-ChhhHHHHHHHHHHcCCcEEE
Q 027747 24 KARAVVIDFT-DASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 24 ~~~DVvIDFS-~p~~~~~~~~~~~~~g~p~Vi 54 (219)
..+|.+|=++ .++.+.+.++.+.+.|+|+|.
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~ 85 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVV 85 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEE
Confidence 3688666443 244556677888888999884
No 251
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=43.05 E-value=72 Score=28.82 Aligned_cols=68 Identities=9% Similarity=0.120 Sum_probs=46.1
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh------hh-HHHHHHHhhcc--CceEEE
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL------ET-VSALSAFCDKA--SMGCLI 80 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~------~~-~~~l~~~a~~~--~~~vv~ 80 (219)
++.++|... +...+- -.+++.+.+.+...++.|.+.+.|+++-++-... +. ...++.++++. ++||.+
T Consensus 5 ~~k~iL~~A-~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~VPV~l 82 (288)
T TIGR00167 5 DVKELLQDA-KEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYGVPVAL 82 (288)
T ss_pred cHHHHHHHH-HHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 445555432 112344 3788899999999999999999999998864321 11 23455667777 788887
No 252
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=42.79 E-value=1.6e+02 Score=26.08 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=46.2
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChh-hHHHHHHHHH---HcCCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDAS-TVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~-~~~~~~~~~~---~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
.|+.+.++++++.... ..+|+||=...+. .+.+.+.... +.|.-+|.++|+... ...++.+.++++++..+=
T Consensus 42 ~g~~~~~~~~e~~~~~---~~~dvvi~~v~~~~~~~~v~~~l~~~l~~g~ivid~st~~~~-~~~~~~~~~~~~g~~~~d 117 (301)
T PRK09599 42 EGATGADSLEELVAKL---PAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYK-DDIRRAELLAEKGIHFVD 117 (301)
T ss_pred CCCeecCCHHHHHhhc---CCCCEEEEEecCCcHHHHHHHHHHhhCCCCCEEEeCCCCChh-HHHHHHHHHHHcCCEEEe
Confidence 3566777888887531 1368766555443 5555544333 345546667676654 445566666667888777
Q ss_pred ccChh
Q 027747 81 APTLS 85 (219)
Q Consensus 81 spNfS 85 (219)
+|...
T Consensus 118 apvsG 122 (301)
T PRK09599 118 VGTSG 122 (301)
T ss_pred CCCCc
Confidence 77664
No 253
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=42.75 E-value=64 Score=28.76 Aligned_cols=60 Identities=8% Similarity=0.025 Sum_probs=46.3
Q ss_pred ChhhHHHHHHHHHHcCCcEEEec-----------CCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHH
Q 027747 34 DASTVYDNVKQATAFGMRSVVYV-----------PHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 93 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGT-----------TG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~ 93 (219)
+++.+.+..+...+.|.+++-+- .|+.++.+..|++++++.++|++-.+=-.-.+..+.+
T Consensus 39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~ 109 (266)
T PRK13398 39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVAD 109 (266)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHH
Confidence 46778888888888999988876 4555677888999999999999988766655555543
No 254
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=42.58 E-value=68 Score=31.55 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 38 VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
....++.+++.|.++|+=.|-+++++...+.++|++.++|+.+
T Consensus 409 ~~~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~ 451 (526)
T TIGR01663 409 CLTACERALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRC 451 (526)
T ss_pred HHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 4456777889999999999999999999999999988888754
No 255
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=42.53 E-value=2e+02 Score=23.98 Aligned_cols=31 Identities=13% Similarity=-0.001 Sum_probs=19.6
Q ss_pred CCcEEEECCC-hhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS~-p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=+.. ++...+.++.+.+.|+|+|.-
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 57 GYKGLLFSPISDVNLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred CCCEEEECCCChHHhHHHHHHHHHCCCeEEEE
Confidence 5786553432 233456677778888888764
No 256
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=42.47 E-value=1.5e+02 Score=25.45 Aligned_cols=41 Identities=17% Similarity=0.048 Sum_probs=31.9
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCc-EEEecCCCChhhH
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLETV 64 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p-~ViGTTG~~~~~~ 64 (219)
.++|++|=+..++.+...++.|.+.|.+ .++|+.+|...+.
T Consensus 190 ~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~ 231 (334)
T cd06347 190 KNPDVIFLPGYYTEVGLIAKQARELGIKVPILGGDGWDSPKL 231 (334)
T ss_pred cCCCEEEEcCchhhHHHHHHHHHHcCCCCcEEecccccCHHH
Confidence 3689888888888888888888888865 3567778876554
No 257
>PRK15452 putative protease; Provisional
Probab=42.37 E-value=2e+02 Score=27.66 Aligned_cols=72 Identities=14% Similarity=0.128 Sum_probs=46.4
Q ss_pred CHHHHHhcccCCCCCc-EEE------------ECCChhhHHHHHHHHHHcCCcEEEecCCCCh-hhHHHHHHHhh---cc
Q 027747 12 DLTMVLGSISQSKARA-VVI------------DFTDASTVYDNVKQATAFGMRSVVYVPHIQL-ETVSALSAFCD---KA 74 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvI------------DFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-~~~~~l~~~a~---~~ 74 (219)
+++++..++. ..+| |.+ +||. +-+.+.+++|-++|+.+.+.+--+.. ++++.+.++.+ +.
T Consensus 12 ~~e~l~aAi~--~GADaVY~G~~~~~~R~~~~~f~~-edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~ 88 (443)
T PRK15452 12 TLKNMRYAFA--YGADAVYAGQPRYSLRVRNNEFNH-ENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAM 88 (443)
T ss_pred CHHHHHHHHH--CCCCEEEECCCccchhhhccCCCH-HHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhC
Confidence 5555544321 2688 666 6775 56889999999999999998666543 34444443322 35
Q ss_pred CceEEEccChhH
Q 027747 75 SMGCLIAPTLSI 86 (219)
Q Consensus 75 ~~~vv~spNfSl 86 (219)
++-.|+..|+++
T Consensus 89 gvDgvIV~d~G~ 100 (443)
T PRK15452 89 KPDALIMSDPGL 100 (443)
T ss_pred CCCEEEEcCHHH
Confidence 566688888553
No 258
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=42.29 E-value=34 Score=32.66 Aligned_cols=37 Identities=8% Similarity=0.258 Sum_probs=34.5
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEE
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~Vi 54 (219)
++++++. .||+.+|=++-+.....+..|.++|+|++.
T Consensus 340 ~l~~ly~------~~dlyLdin~~e~~~~al~eA~~~G~pI~a 376 (438)
T TIGR02919 340 KIQELYQ------TCDIYLDINHGNEILNAVRRAFEYNLLILG 376 (438)
T ss_pred HHHHHHH------hccEEEEccccccHHHHHHHHHHcCCcEEE
Confidence 7888886 799999999999999999999999999995
No 259
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=42.12 E-value=1.5e+02 Score=22.81 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=36.9
Q ss_pred CCc---EEEECCChhhHHHHHHHHHH------cCCcEEEecCCCChhh-----HHHHHHHhhccCceEE-EccChhHHHH
Q 027747 25 ARA---VVIDFTDASTVYDNVKQATA------FGMRSVVYVPHIQLET-----VSALSAFCDKASMGCL-IAPTLSIGSI 89 (219)
Q Consensus 25 ~~D---VvIDFS~p~~~~~~~~~~~~------~g~p~ViGTTG~~~~~-----~~~l~~~a~~~~~~vv-~spNfSlGv~ 89 (219)
.+| +++|.|+++...+...+..+ .++|+|+--+=.+..+ .+..+.++++.+.|++ +|+....|+.
T Consensus 74 ~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 153 (166)
T cd01869 74 GAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVE 153 (166)
T ss_pred cCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHH
Confidence 456 36688888866554443332 3566665545443211 2445666666677766 5555555655
Q ss_pred HH
Q 027747 90 LL 91 (219)
Q Consensus 90 ll 91 (219)
-+
T Consensus 154 ~~ 155 (166)
T cd01869 154 QA 155 (166)
T ss_pred HH
Confidence 44
No 260
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=41.96 E-value=52 Score=27.67 Aligned_cols=37 Identities=14% Similarity=0.247 Sum_probs=29.7
Q ss_pred CCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhH
Q 027747 49 GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 86 (219)
Q Consensus 49 g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSl 86 (219)
+..+|+.|+.- .+....+.++|++.++|++.+.....
T Consensus 113 ~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G~ 149 (198)
T cd01485 113 KFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYGL 149 (198)
T ss_pred CCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 56799998764 55667899999999999999977543
No 261
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=41.96 E-value=42 Score=30.25 Aligned_cols=52 Identities=10% Similarity=0.170 Sum_probs=38.8
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhh------HHHHHHHhhccCceEEE
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET------VSALSAFCDKASMGCLI 80 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~------~~~l~~~a~~~~~~vv~ 80 (219)
.+++.+-+.+...++.|.+.+.|+|+.++-..-.. ...++.++++.++||.+
T Consensus 21 AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~vPVal 78 (287)
T PF01116_consen 21 AFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEASVPVAL 78 (287)
T ss_dssp EEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHSTSEEEE
T ss_pred EEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcCCCEEe
Confidence 77888889999999999999999999987432221 13456778888999987
No 262
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=41.92 E-value=54 Score=24.51 Aligned_cols=44 Identities=7% Similarity=-0.071 Sum_probs=22.8
Q ss_pred HHHHHHHcCCcEEEecCCCCh--hhHHHHHHHhhccCceEEEccCh
Q 027747 41 NVKQATAFGMRSVVYVPHIQL--ETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 41 ~~~~~~~~g~p~ViGTTG~~~--~~~~~l~~~a~~~~~~vv~spNf 84 (219)
..+.-.+..+.+||=+..-.. .+-..|++.|-+.++|++-+.+.
T Consensus 59 i~~~i~~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T~~~t 104 (110)
T cd01424 59 IVDLIKNGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFTTLDT 104 (110)
T ss_pred HHHHHHcCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEecHHH
Confidence 334444556666666542111 01235666666677777755443
No 263
>PF13466 STAS_2: STAS domain
Probab=41.91 E-value=58 Score=22.51 Aligned_cols=35 Identities=20% Similarity=0.258 Sum_probs=26.0
Q ss_pred CcEEEECCChh--------hHHHHHHHHHHcCCcEEEecCCCChh
Q 027747 26 RAVVIDFTDAS--------TVYDNVKQATAFGMRSVVYVPHIQLE 62 (219)
Q Consensus 26 ~DVvIDFS~p~--------~~~~~~~~~~~~g~p~ViGTTG~~~~ 62 (219)
.+|+||||.-+ .+....+.+.+.|.++.+ +|.++.
T Consensus 27 ~~v~lDls~v~~iDsagl~lL~~~~~~~~~~g~~~~l--~~~~~~ 69 (80)
T PF13466_consen 27 RPVVLDLSGVEFIDSAGLQLLLAAARRARARGRQLRL--TGPSPA 69 (80)
T ss_pred CeEEEECCCCCeecHHHHHHHHHHHHHHHHCCCeEEE--EcCCHH
Confidence 68999999764 445566777778888888 777763
No 264
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=41.84 E-value=1.8e+02 Score=25.11 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=20.7
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEE
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~Vi 54 (219)
.+|.+|=++ .++...+.++.+.+.++|+|.
T Consensus 56 ~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~ 86 (298)
T cd06302 56 GVDAIAVVPNDPDALEPVLKKAREAGIKVVT 86 (298)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHHCCCeEEE
Confidence 688555444 344456777888889999885
No 265
>PRK06801 hypothetical protein; Provisional
Probab=41.66 E-value=1e+02 Score=27.85 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=47.1
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hh-HHHHHHHhhccCceEEE
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ET-VSALSAFCDKASMGCLI 80 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~-~~~l~~~a~~~~~~vv~ 80 (219)
++.++|... ...++- ..+++.+.+.+...++.|.+.+.|+++.++-... +. ...++.++++.++||.+
T Consensus 5 ~~~~~l~~A-~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vpV~l 79 (286)
T PRK06801 5 SLANGLAHA-RKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIPVVL 79 (286)
T ss_pred cHHHHHHHH-HHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCCEEE
Confidence 345555431 113344 3788889999999999999999999998864322 22 23456778888899887
No 266
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=41.53 E-value=1.7e+02 Score=22.98 Aligned_cols=21 Identities=5% Similarity=-0.089 Sum_probs=11.6
Q ss_pred HHHHHHHHhhhcCCeEEEecCC
Q 027747 91 LQQAAISASFHYKNVEIVESRP 112 (219)
Q Consensus 91 l~~~~~~aa~~~~dieIiE~Hh 112 (219)
+.+.++.+++. +.+..++.+.
T Consensus 133 ~n~~l~~~a~~-~~v~~vd~~~ 153 (185)
T cd01832 133 YNAVIRAVAAR-YGAVHVDLWE 153 (185)
T ss_pred HHHHHHHHHHH-cCCEEEeccc
Confidence 34445555443 4677777654
No 267
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=41.27 E-value=73 Score=28.09 Aligned_cols=47 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCcEEE--ecCC----CChhhHHHHHHHhhcc---CceEEE
Q 027747 34 DASTVYDNVKQATAFGMRSVV--YVPH----IQLETVSALSAFCDKA---SMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~Vi--GTTG----~~~~~~~~l~~~a~~~---~~~vv~ 80 (219)
+.+.+.++++++++.|+.=|. |||| ++.++..++-+.+.+. ++|++.
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~ 72 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIA 72 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEE
No 268
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.15 E-value=80 Score=30.44 Aligned_cols=72 Identities=11% Similarity=-0.089 Sum_probs=57.3
Q ss_pred HHHHHHHHHc--CCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhcCCeEEEecC
Q 027747 39 YDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESR 111 (219)
Q Consensus 39 ~~~~~~~~~~--g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~~dieIiE~H 111 (219)
-..+-++.+. +.-+|+|-| |-...+++|+..|.+.++|+.-+.--+-=+.+..+-++.+.+.-+|+=|+++-
T Consensus 119 ~KlA~y~kkkG~K~~LvcaDT-FRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTS 192 (483)
T KOG0780|consen 119 TKLAYYYKKKGYKVALVCADT-FRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTS 192 (483)
T ss_pred HHHHHHHHhcCCceeEEeecc-cccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 3444455554 345677777 88888999999999999999999888888888888888887777999999983
No 269
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=41.12 E-value=2.1e+02 Score=23.78 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=20.0
Q ss_pred CCcEEEEC-CChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDF-TDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDF-S~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=+ +.++...+.++.+.+.|+|+|.=
T Consensus 57 ~vdgvii~~~~~~~~~~~l~~~~~~~ipvV~~ 88 (273)
T cd06310 57 GPDAILLAPTDAKALVPPLKEAKDAGIPVVLI 88 (273)
T ss_pred CCCEEEEcCCChhhhHHHHHHHHHCCCCEEEe
Confidence 57844433 33444466778888888888863
No 270
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Probab=41.11 E-value=54 Score=28.80 Aligned_cols=78 Identities=10% Similarity=0.105 Sum_probs=47.5
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhh------------HHHHHHHHHHcCCcEEEec--CCCChhhHHHHHHHhh
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDAST------------VYDNVKQATAFGMRSVVYV--PHIQLETVSALSAFCD 72 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~------------~~~~~~~~~~~g~p~ViGT--TG~~~~~~~~l~~~a~ 72 (219)
++++++++++++ .++.+|=.|.... ...........++.+|.|+ +|++.+.++.-...+
T Consensus 60 a~i~~~l~eal~------~~~~vvatt~r~~~~~~~~~~~~~~~~~~~~~~~~~~~alVFG~E~~GLs~e~l~~cd~~v- 132 (245)
T PRK15114 60 ATIVDTLDEALA------GCSLVVGTSARSRTLPWPMLDPRECGLKSVAEAANAPVALVFGRERVGLTNDELQKCHYHV- 132 (245)
T ss_pred CeEecCHHHHHh------cCCEEEEEcCCccCCcccccCHHHHHHHHHhhccCCCEEEEECCCCCCCCHHHHHhCCeEE-
Confidence 467889999986 5667776664321 0111222345678999999 799986544332222
Q ss_pred ccCceE---EEccChhHHHHHHHH
Q 027747 73 KASMGC---LIAPTLSIGSILLQQ 93 (219)
Q Consensus 73 ~~~~~v---v~spNfSlGv~ll~~ 93 (219)
.||. +-|=|.|.-+.++.+
T Consensus 133 --~IP~~~~~~SLNla~AvaI~lY 154 (245)
T PRK15114 133 --AIAANPEYSSLNLAMAVQVIAY 154 (245)
T ss_pred --EecCCCCCCcccHHHHHHHHHH
Confidence 2443 345578887777654
No 271
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=41.01 E-value=2.9e+02 Score=25.45 Aligned_cols=185 Identities=9% Similarity=0.021 Sum_probs=95.3
Q ss_pred CCcEEEECCC----hhhHHHHHHHHHH-cCCcEEEecCCCChhhHHHHHHH----hhccCceEEEccChhHHHHHHHH--
Q 027747 25 ARAVVIDFTD----ASTVYDNVKQATA-FGMRSVVYVPHIQLETVSALSAF----CDKASMGCLIAPTLSIGSILLQQ-- 93 (219)
Q Consensus 25 ~~DVvIDFS~----p~~~~~~~~~~~~-~g~p~ViGTTG~~~~~~~~l~~~----a~~~~~~vv~spNfSlGv~ll~~-- 93 (219)
...||.-|-. |+. .+.+..|++ .|.--|++ +||++.-....+-+ .-+-....+|-+=.|-|.--..+
T Consensus 84 G~NVV~s~~~h~~~p~~-~~~ld~AAk~~g~vsvi~-~GwDPG~~si~r~~~ea~lp~g~~yt~wG~g~s~ghs~a~~~~ 161 (324)
T TIGR01921 84 FANTVDSFDNHRDIPRH-RQVMDAAAKAAGNVSVIS-TGWDPGMFSINRVYGEAVLPKGQTYTFWGPGLSQGHSDAVRRI 161 (324)
T ss_pred CCCEEECCCcccCCHHH-HHHHHHHHHHcCCEEEEE-CCCCcChHHHHHHHHhccCCCCcceeccCCCcCchhhhhhccc
Confidence 5677776642 333 445555555 67777777 99999664443333 22344556777777777654321
Q ss_pred ----------------HHHHHhhhcCCeEEEecCCC--CCCCCcH-HHHHHHHHHHhcCcccCCCccc-cccccccc--c
Q 027747 94 ----------------AAISASFHYKNVEIVESRPN--ARDFPSP-DATQIANNLSNLGQIYNREDIS-TDVKARGQ--V 151 (219)
Q Consensus 94 ----------------~~~~aa~~~~dieIiE~Hh~--K~DaPSG-TA~~la~~i~~~~~~~~~~~~~-~~~~~r~~--~ 151 (219)
+....+--++++.-.+.|.+ =..+-.| +-.++.+.|......|..+... ........ .
T Consensus 162 ~Gv~~a~~~tip~~dal~~v~~Ge~~~l~~~~~h~r~~~vv~e~g~~~~~v~~~i~~~p~yf~~~~t~v~~i~~~~~~~~ 241 (324)
T TIGR01921 162 DGVKKAVQYTLPSEDALEKARRGEAPELTGKQTHKRQCFVVLKDGADHERVENEIRTMPDYFVGYETEVNFIDEATFDSE 241 (324)
T ss_pred CCcccceEEEEehHHHHHHHHcCCccccccccceeeeEEEEecCCCCHHHHHHHHhhCcccccCCCcEEEEeChHHHHHh
Confidence 11111122356666777775 2334445 5667777777543122111110 00000000 0
Q ss_pred CCCCceeEEEEEcCCCceEEEEEEccCCcEEEEEEeecCccccHHHHHH-HHHHhhcC----CCeeeecccc
Q 027747 152 LGEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLIL-AIRKVVHL----KNLVYGLEKF 218 (219)
Q Consensus 152 ~~~~~i~ihS~R~g~ivg~H~V~f~~~~E~i~i~H~a~sR~~Fa~Gal~-Aa~~l~~~----~~g~y~m~dv 218 (219)
.+.-.=+.+-+|-|.-- .+..++|+++=+-.|-=.|-.-++- +||-..++ .+|.|+|-|+
T Consensus 242 ~~~~~hg~~~~r~g~t~-------~~~~~~~~~~~~~~~np~~ta~v~va~ara~~r~~~~~~~g~~t~~~i 306 (324)
T TIGR01921 242 HTGMPHGGHVIRTGDSG-------GTFNQTVEFNLKLDRNPDFTASVLVAFARAAHRLKQAGQPGAFTVLEV 306 (324)
T ss_pred cCCCCCceEEEEEecCC-------CCcceEEEEEEecCCCHHHHHHHHHHHHHHHHhhhhcCCCCCeEeeec
Confidence 00001245667776542 3456777887767655555544443 44555444 5699998775
No 272
>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.
Probab=41.00 E-value=41 Score=31.91 Aligned_cols=67 Identities=9% Similarity=0.110 Sum_probs=41.6
Q ss_pred hhhHHHHHHHHHHcCCcEEEe-cCCCCh---hhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhh
Q 027747 35 ASTVYDNVKQATAFGMRSVVY-VPHIQL---ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH 101 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViG-TTG~~~---~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~ 101 (219)
.+.+.+.++..-+.++..|+= |++|-+ |++..|.++|.++++|.|+=.-++++..-.++.++.|.+.
T Consensus 141 ~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~~ 211 (389)
T PF05889_consen 141 LEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWRV 211 (389)
T ss_dssp HHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHhc
Confidence 345555554433333444444 446654 4577788888999999999888888888888888887775
No 273
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=40.96 E-value=54 Score=28.46 Aligned_cols=60 Identities=13% Similarity=0.120 Sum_probs=39.7
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCce
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~ 77 (219)
-+++++++.-+ .-|+-|| +...+.+++|.++++|+|+=..|-++--...++.+..+.++.
T Consensus 58 ~~s~~Eile~l----lk~i~Id----p~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~ 117 (220)
T COG4359 58 HSSLEEILEFL----LKDIKID----PGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIY 117 (220)
T ss_pred CCCHHHHHHHH----HhhcccC----ccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhcccccee
Confidence 34556665421 2344444 567889999999999999999998875555555555444443
No 274
>PRK06683 hypothetical protein; Provisional
Probab=40.91 E-value=95 Score=22.67 Aligned_cols=35 Identities=6% Similarity=-0.044 Sum_probs=15.7
Q ss_pred cCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 48 FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 48 ~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
....+|+=..--++...+.+.++|+++++|+++.+
T Consensus 26 gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~ 60 (82)
T PRK06683 26 GIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE 60 (82)
T ss_pred CCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 33344443343444444444555555555554443
No 275
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=40.75 E-value=91 Score=26.15 Aligned_cols=27 Identities=7% Similarity=0.051 Sum_probs=10.7
Q ss_pred EEecCCCChhhHHHHHHHhhccCceEE
Q 027747 53 VVYVPHIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 53 ViGTTG~~~~~~~~l~~~a~~~~~~vv 79 (219)
|+.+..++++++...-+++.+.+.=+|
T Consensus 122 I~e~~~l~~~~i~~a~ria~e~GaD~I 148 (203)
T cd00959 122 ILETGLLTDEEIIKACEIAIEAGADFI 148 (203)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCCCEE
Confidence 334444444444443344433333333
No 276
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=40.65 E-value=96 Score=23.44 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=28.9
Q ss_pred CCc---EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 25 ARA---VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 25 ~~D---VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
.+| .++|.+.++........+.+.++|+++--|-++.
T Consensus 74 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl 113 (158)
T cd01879 74 KPDLIVNVVDATNLERNLYLTLQLLELGLPVVVALNMIDE 113 (158)
T ss_pred CCcEEEEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhh
Confidence 567 3778888887777777778889999998887764
No 277
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=40.51 E-value=1.5e+02 Score=26.23 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=26.8
Q ss_pred HHcCCcEE--Ee---cCCCChhhHHHHHHHhhccCceEEEc-cChh
Q 027747 46 TAFGMRSV--VY---VPHIQLETVSALSAFCDKASMGCLIA-PTLS 85 (219)
Q Consensus 46 ~~~g~p~V--iG---TTG~~~~~~~~l~~~a~~~~~~vv~s-pNfS 85 (219)
.++|+..+ +| -...++.++.++.+.+++.++++|+. ++++
T Consensus 194 ~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~ 239 (286)
T cd01019 194 KRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFH 239 (286)
T ss_pred HHcCCceeeeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCC
Confidence 45566644 22 13467788888888888888888775 5544
No 278
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=40.19 E-value=28 Score=36.33 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=37.6
Q ss_pred HHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHH
Q 027747 42 VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 42 ~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
-..|.+.|+|+|-||.|.- +.++.+++++++.+-|+++-+-+.=|
T Consensus 126 r~~A~~agvPvipgt~~~~-~~~ee~~~fa~~~gyPvmiKA~~GGG 170 (1149)
T COG1038 126 RNAAIKAGVPVIPGTDGPI-ETIEEALEFAEEYGYPVMIKAAAGGG 170 (1149)
T ss_pred HHHHHHcCCCccCCCCCCc-ccHHHHHHHHHhcCCcEEEEEccCCC
Confidence 3567889999999999985 56789999999999999998776544
No 279
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=40.14 E-value=62 Score=23.76 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=13.7
Q ss_pred cEEEECCCh--------hhHHHHHHHHHHcCCcEEE
Q 027747 27 AVVIDFTDA--------STVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 27 DVvIDFS~p--------~~~~~~~~~~~~~g~p~Vi 54 (219)
.|++|||.- ..+.+..+.+.+.|..+++
T Consensus 43 ~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l 78 (109)
T cd07041 43 GVIIDLTGVPVIDSAVARHLLRLARALRLLGARTIL 78 (109)
T ss_pred EEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEE
Confidence 466666543 2334444444455555555
No 280
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.12 E-value=1.4e+02 Score=28.86 Aligned_cols=69 Identities=12% Similarity=0.001 Sum_probs=50.8
Q ss_pred HHHHHH-HcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc-ChhHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 41 NVKQAT-AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP-TLSIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 41 ~~~~~~-~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp-NfSlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
...+.. +..+++++++-=|-+..+++|+.++++.++|++-.. +-+ =+.+..+.++.+....+|+=|+++
T Consensus 120 LA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~-Pv~Iak~al~~ak~~~~DvvIvDT 190 (451)
T COG0541 120 LAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKD-PVEIAKAALEKAKEEGYDVVIVDT 190 (451)
T ss_pred HHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCC-HHHHHHHHHHHHHHcCCCEEEEeC
Confidence 333333 456677888777999999999999999999987662 221 234557777777777799999997
No 281
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=40.12 E-value=49 Score=28.17 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=41.0
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
++.+.+. .+|++|--|..+..-..+-.|+..|+|+|..-.|...+ ...+.+.++++.++=.
T Consensus 259 ~~~~~~~------~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~-------~i~~~~~g~~~~~~~~ 319 (364)
T cd03814 259 ELAAAYA------SADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPAD-------IVTDGENGLLVEPGDA 319 (364)
T ss_pred HHHHHHH------hCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchh-------hhcCCcceEEcCCCCH
Confidence 4555665 58998877777776677788899999988766655432 2233456777766643
No 282
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=40.08 E-value=2e+02 Score=24.77 Aligned_cols=75 Identities=15% Similarity=0.093 Sum_probs=48.5
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHH---HcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~---~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+|+.+.++.+++.+ .+|+||=-..|..+.+.++... ..+..+|.-+-|.+-++ |+++.......+=.-
T Consensus 29 ~g~~~~~~~~e~~~------~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~---l~~~~~~~~~ivR~m 99 (245)
T TIGR00112 29 LGIVASSDAQEAVK------EADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEK---LSQLLGGTRRVVRVM 99 (245)
T ss_pred cCcEEeCChHHHHh------hCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHH---HHHHcCCCCeEEEEC
Confidence 56667777777765 6898877777998888776554 34566777777888765 454442112234456
Q ss_pred cChhHHH
Q 027747 82 PTLSIGS 88 (219)
Q Consensus 82 pNfSlGv 88 (219)
||....+
T Consensus 100 Pn~~~~~ 106 (245)
T TIGR00112 100 PNTPAKV 106 (245)
T ss_pred CChHHHH
Confidence 8875433
No 283
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=39.87 E-value=43 Score=27.89 Aligned_cols=45 Identities=18% Similarity=-0.051 Sum_probs=33.7
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
.++.+++. .+|++|-.+..+.....+-.|+..|+|+|+.-.|...
T Consensus 267 ~~~~~~~~------~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~ 311 (374)
T cd03801 267 EDLPALYA------AADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIP 311 (374)
T ss_pred hhHHHHHH------hcCEEEecchhccccchHHHHHHcCCcEEEeCCCChh
Confidence 45666665 5899998887777777788899999998876654433
No 284
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=39.86 E-value=49 Score=29.66 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=8.4
Q ss_pred EccCCcEEEEEEe
Q 027747 175 FSRPGEVYSIKHD 187 (219)
Q Consensus 175 f~~~~E~i~i~H~ 187 (219)
|.+.--+|+||.+
T Consensus 258 fC~~c~r~r~t~d 270 (331)
T PRK00164 258 FCASCNRLRLTAD 270 (331)
T ss_pred ccccCCeEEEcCC
Confidence 6666667777654
No 285
>PLN02417 dihydrodipicolinate synthase
Probab=39.85 E-value=71 Score=28.27 Aligned_cols=47 Identities=9% Similarity=-0.015 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCcEE--EecCC----CChhhHHHHHHHhhc---cCceEEE
Q 027747 34 DASTVYDNVKQATAFGMRSV--VYVPH----IQLETVSALSAFCDK---ASMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~V--iGTTG----~~~~~~~~l~~~a~~---~~~~vv~ 80 (219)
..+.+.++++++++.|+.=| .|||| ++.++..++-+.+.+ .++|++.
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~ 75 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIG 75 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEE
No 286
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=39.83 E-value=1.6e+02 Score=24.70 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=21.1
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|. +|.-..++...+.++.+.+.++|+|.--+
T Consensus 55 ~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~ 88 (273)
T cd06309 55 GVDVIILAPVVETGWDPVLKEAKAAGIPVILVDR 88 (273)
T ss_pred CCCEEEEcCCccccchHHHHHHHHCCCCEEEEec
Confidence 5784 44333444445667788888998876543
No 287
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=39.70 E-value=88 Score=26.65 Aligned_cols=42 Identities=21% Similarity=0.187 Sum_probs=29.6
Q ss_pred CHHHHHhcccCCCCCcEEEECCC-hhhHHHHHHHHHHcCCcEEEe-cCCC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY-VPHI 59 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~-p~~~~~~~~~~~~~g~p~ViG-TTG~ 59 (219)
++++.+. .+|+|||-+. ++.-...-++|.++++|+|.+ +.|+
T Consensus 104 ~~~~~~~------~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~ 147 (228)
T cd00757 104 NAEELIA------GYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGF 147 (228)
T ss_pred HHHHHHh------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccC
Confidence 3445554 6999998875 444455668899999999985 4454
No 288
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.46 E-value=1.2e+02 Score=24.36 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=7.7
Q ss_pred HHHHHHHcCCcEEEec
Q 027747 41 NVKQATAFGMRSVVYV 56 (219)
Q Consensus 41 ~~~~~~~~g~p~ViGT 56 (219)
+++..++.+--+|++.
T Consensus 61 n~E~ll~l~PDlii~~ 76 (186)
T cd01141 61 NVELIVALKPDLVILY 76 (186)
T ss_pred CHHHHhccCCCEEEEe
Confidence 3444444555555543
No 289
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=39.45 E-value=47 Score=25.17 Aligned_cols=44 Identities=9% Similarity=-0.078 Sum_probs=29.2
Q ss_pred HHHHHHH-cCCcEEEecC-CCC----hhhHHHHHHHhhccCceEEEccCh
Q 027747 41 NVKQATA-FGMRSVVYVP-HIQ----LETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 41 ~~~~~~~-~g~p~ViGTT-G~~----~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
..+.-.+ .++.+||=|. |.. ..+-..|+++|.+.++|++-+.+.
T Consensus 59 i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T~~~t 108 (112)
T cd00532 59 VDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTTPNAT 108 (112)
T ss_pred HHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEECHHH
Confidence 3444456 6888888875 443 223467888888889998876543
No 290
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=39.22 E-value=65 Score=27.20 Aligned_cols=9 Identities=11% Similarity=0.091 Sum_probs=5.8
Q ss_pred CCcEEEECC
Q 027747 25 ARAVVIDFT 33 (219)
Q Consensus 25 ~~DVvIDFS 33 (219)
.+|+|||-+
T Consensus 110 ~~DlVi~a~ 118 (200)
T TIGR02354 110 DADIVCEAF 118 (200)
T ss_pred CCCEEEECC
Confidence 467777763
No 291
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=39.07 E-value=93 Score=29.01 Aligned_cols=56 Identities=9% Similarity=0.137 Sum_probs=41.5
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCChh---------------------hHHHHHHHhhccCceEEE
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE---------------------TVSALSAFCDKASMGCLI 80 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~---------------------~~~~l~~~a~~~~~~vv~ 80 (219)
++-| .+++.+.+.+...++.|.+.+.|+++.++-.... -...++.++++.++||++
T Consensus 15 ~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVal 92 (345)
T cd00946 15 GFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVL 92 (345)
T ss_pred CceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence 3443 7889999999999999999999999988643211 113345677777888776
No 292
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.04 E-value=1.1e+02 Score=26.39 Aligned_cols=32 Identities=6% Similarity=0.079 Sum_probs=26.5
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI 59 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~ 59 (219)
.++-+| +|....+.+++|.++|+|++-|+.-.
T Consensus 88 GA~Fiv---sP~~~~~v~~~~~~~~i~~iPG~~T~ 119 (213)
T PRK06552 88 GAQFIV---SPSFNRETAKICNLYQIPYLPGCMTV 119 (213)
T ss_pred CCCEEE---CCCCCHHHHHHHHHcCCCEECCcCCH
Confidence 677777 78888899999999999999988644
No 293
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=39.01 E-value=1.1e+02 Score=29.04 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=58.4
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC--CCChhhHHHHHHHhhccCceEEEccChh---
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--HIQLETVSALSAFCDKASMGCLIAPTLS--- 85 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT--G~~~~~~~~l~~~a~~~~~~vv~spNfS--- 85 (219)
.++|++...+ ..+|++|=||.-....+.++. .+.+. -|+|-- |++.= .|+.++ ++++-|+=+|+.+
T Consensus 36 ~~~eel~~~i---~~~~aviVrs~tkvtadvl~a-a~~~l-kvVgrag~G~dNV---DL~AAt-e~gi~Vvn~P~~Ns~s 106 (406)
T KOG0068|consen 36 LSLEELIEKI---KDCDALIVRSKTKVTADVLEA-AAGGL-KVVGRAGIGVDNV---DLKAAT-ENGILVVNTPTANSRS 106 (406)
T ss_pred CCHHHHHHHh---ccCCEEEEEeCCeecHHHHHh-hcCCe-EEEEecccCcccc---ChhhHH-hCCeEEEeCCCCChHH
Confidence 4566666543 479999999999999999987 34444 455654 55542 466665 4899999999876
Q ss_pred ---HHHHHHHHHHHHHhhh
Q 027747 86 ---IGSILLQQAAISASFH 101 (219)
Q Consensus 86 ---lGv~ll~~~~~~aa~~ 101 (219)
+++-|+..+++...+.
T Consensus 107 aAEltigli~SLaR~i~~A 125 (406)
T KOG0068|consen 107 AAELTIGLILSLARQIGQA 125 (406)
T ss_pred HHHHHHHHHHHHhhhcchh
Confidence 5777778888777664
No 294
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=38.99 E-value=68 Score=26.94 Aligned_cols=59 Identities=8% Similarity=0.026 Sum_probs=39.0
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
..||+-|++-.-.......++. .+..+|+.|+. +.+....+.++|++.++|++.+....
T Consensus 87 lNp~v~i~~~~~~~~~~~~~~~--~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 87 LNPRVKVSVDTDDISEKPEEFF--SQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred HCCCCEEEEEecCccccHHHHH--hCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 3688877654332222222222 35678998875 56667789999999999999887533
No 295
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=38.97 E-value=1.8e+02 Score=22.71 Aligned_cols=52 Identities=17% Similarity=0.135 Sum_probs=28.4
Q ss_pred EEEECCChhhHHHHHHHHH---H---cCCcEEEecCCCChh-----hHHHHHHHhhccCceEE
Q 027747 28 VVIDFTDASTVYDNVKQAT---A---FGMRSVVYVPHIQLE-----TVSALSAFCDKASMGCL 79 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~---~---~g~p~ViGTTG~~~~-----~~~~l~~~a~~~~~~vv 79 (219)
+++|.+.++...+...+.. + .++|+|+.-|=.+.. ..+..+.++++.+.+++
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (168)
T cd01866 82 LVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFM 144 (168)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEE
Confidence 4778888877665544432 1 356766665655432 12334445555555555
No 296
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=38.52 E-value=1.4e+02 Score=21.68 Aligned_cols=64 Identities=13% Similarity=0.052 Sum_probs=43.2
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh-hHHHHH
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL-SIGSIL 90 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf-SlGv~l 90 (219)
-++|=+.+.+......+...+.+.++..=..+.++.+...+.+.-.+....++++.+. +.|+++
T Consensus 30 ~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~ 94 (131)
T cd00079 30 KVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDL 94 (131)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcCh
Confidence 4677677777777777777677788777777777766666655544455566766654 556665
No 297
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=38.50 E-value=59 Score=27.28 Aligned_cols=47 Identities=11% Similarity=-0.014 Sum_probs=35.9
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecCCC-C-hhhHHHHHHHhhccCceEEEccC
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVPHI-Q-LETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTTG~-~-~~~~~~l~~~a~~~~~~vv~spN 83 (219)
.|+.+.+.+. +.+.|+++-=.|. . ++..+.+.+++++.++|++.+++
T Consensus 23 ~p~~aa~lI~---~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 23 SPKIAAMMIK---KAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CHHHHHHHHH---hCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 6877777766 5578887754544 3 45578899999999999999998
No 298
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=38.31 E-value=1.4e+02 Score=28.34 Aligned_cols=71 Identities=10% Similarity=-0.042 Sum_probs=51.6
Q ss_pred CCcEEEECC-----ChhhHHHHHHHHHHcCCcEEEecCCCChh-hHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHH
Q 027747 25 ARAVVIDFT-----DASTVYDNVKQATAFGMRSVVYVPHIQLE-TVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 98 (219)
Q Consensus 25 ~~DVvIDFS-----~p~~~~~~~~~~~~~g~p~ViGTTG~~~~-~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~a 98 (219)
+.-++||=| .|+++...++.|... .|+|-+.| .+ .++.+-++|.+++.|++..+= ...+++..+.+.+
T Consensus 188 ~vPLIL~gsg~~~kD~eVLeaaLe~~~G~-kpLL~SAt---~e~Ny~~ia~lAk~yg~~Vvv~s~--~Din~ak~Ln~kL 261 (389)
T TIGR00381 188 DVPIVIGGSGNPEKDPLVLEKAAEVAEGE-RCLLASAN---LDLDYEKIANAAKKYGHVVLSWTI--MDINMQKTLNRYL 261 (389)
T ss_pred CCCEEEeCCCCCcCCHHHHHHHHHHhCCC-CcEEEecC---chhhHHHHHHHHHHhCCeEEEEcC--CcHHHHHHHHHHH
Confidence 455899966 899888888766443 48887777 44 778899999999999888662 3356666676666
Q ss_pred hhh
Q 027747 99 SFH 101 (219)
Q Consensus 99 a~~ 101 (219)
.++
T Consensus 262 ~~~ 264 (389)
T TIGR00381 262 LKR 264 (389)
T ss_pred HHc
Confidence 654
No 299
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=38.27 E-value=1.4e+02 Score=23.84 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=35.1
Q ss_pred EEEECCChhhH-HHHHHHHHHcCCcEEEecCCCChh----hHHHHHHHhhccC-ceEEEcc
Q 027747 28 VVIDFTDASTV-YDNVKQATAFGMRSVVYVPHIQLE----TVSALSAFCDKAS-MGCLIAP 82 (219)
Q Consensus 28 VvIDFS~p~~~-~~~~~~~~~~g~p~ViGTTG~~~~----~~~~l~~~a~~~~-~~vv~sp 82 (219)
|.|=||-|+.+ .+.++.+.+.|.++|+ -||-.. -...+.++..+.+ .++.+-|
T Consensus 3 vFvS~SMP~~~Lk~l~~~a~~~g~~~Vl--RG~~~~~~~~T~~~i~~L~~~~~~~~v~IdP 61 (130)
T TIGR02742 3 VFVSFSMPEPLLKQLLDQAEALGAPLVI--RGLLDNGFKATATRIQSLIKDGGKSGVQIDP 61 (130)
T ss_pred EEEEcCCCHHHHHHHHHHHHHhCCeEEE--eCCCCCCHHHHHHHHHHHHhcCCCCcEEECh
Confidence 56789999655 6677999999999998 566542 3455666654333 4444444
No 300
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.27 E-value=1.5e+02 Score=27.63 Aligned_cols=70 Identities=11% Similarity=-0.023 Sum_probs=40.7
Q ss_pred HHHHHHHHHHcCCcEEEecCCCChhhHHHH--------------------HHHhhccCceEEEccChhHHHHHHHHHHHH
Q 027747 38 VYDNVKQATAFGMRSVVYVPHIQLETVSAL--------------------SAFCDKASMGCLIAPTLSIGSILLQQAAIS 97 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l--------------------~~~a~~~~~~vv~spNfSlGv~ll~~~~~~ 97 (219)
+.-..+.+.+.|+|++ |+=++.++.+.+ ++++ +.+.||+++-.+|..+.-+..+++.
T Consensus 154 l~~L~~~~~e~Gl~~~--tev~d~~~v~~~~~~~d~lqIga~~~~n~~LL~~va-~t~kPVllk~G~~~t~ee~~~A~e~ 230 (352)
T PRK13396 154 LELLAAAREATGLGII--TEVMDAADLEKIAEVADVIQVGARNMQNFSLLKKVG-AQDKPVLLKRGMAATIDEWLMAAEY 230 (352)
T ss_pred HHHHHHHHHHcCCcEE--EeeCCHHHHHHHHhhCCeEEECcccccCHHHHHHHH-ccCCeEEEeCCCCCCHHHHHHHHHH
Confidence 3334444556666666 455666554443 3343 3567777777777666666666665
Q ss_pred Hhhhc-CCeEEEec
Q 027747 98 ASFHY-KNVEIVES 110 (219)
Q Consensus 98 aa~~~-~dieIiE~ 110 (219)
+...- .++-+.|.
T Consensus 231 i~~~Gn~~viL~er 244 (352)
T PRK13396 231 ILAAGNPNVILCER 244 (352)
T ss_pred HHHcCCCeEEEEec
Confidence 54332 56777766
No 301
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=38.24 E-value=94 Score=26.93 Aligned_cols=45 Identities=11% Similarity=0.149 Sum_probs=19.2
Q ss_pred hhhHHHHHHHHHH-cCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 35 ASTVYDNVKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 35 p~~~~~~~~~~~~-~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
|+...++++.+++ .++.+|+|+-+ ......+...+++.++|++.+
T Consensus 54 ~~~a~~~~~~l~~~~~v~~vvg~~~--s~~~~~~~~~~~~~~ip~i~~ 99 (343)
T PF13458_consen 54 PAQAVQAARKLIDDDGVDAVVGPLS--SAQAEAVAPIAEEAGIPYISP 99 (343)
T ss_dssp HHHHHHHHHHHHHTSTESEEEESSS--HHHHHHHHHHHHHHT-EEEES
T ss_pred hHHHHHHHHHhhhhcCcEEEEecCC--cHHHHHHHHHHHhcCcEEEEe
Confidence 4444455544444 45555555421 122233344444445555443
No 302
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=38.14 E-value=1.4e+02 Score=28.79 Aligned_cols=67 Identities=13% Similarity=0.047 Sum_probs=42.8
Q ss_pred cccccCHHHHHhcccCCCCCcEEEEC-CChhhHHHHHHH---HHHcCCcEEEecCCCChhhHHHHHHHhhccCce
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDF-TDASTVYDNVKQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDF-S~p~~~~~~~~~---~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~ 77 (219)
+..++++++++.+. ..+|+||=+ ..++.+.+.++. +++.|.-+|-|+|++..+...+.+++. ++++.
T Consensus 51 i~~~~s~~e~v~~l---~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~-~~Gi~ 121 (470)
T PTZ00142 51 VKGYHTLEELVNSL---KKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCE-EKGIL 121 (470)
T ss_pred ceecCCHHHHHhcC---CCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHH-HcCCe
Confidence 33577888887631 248855545 666666666544 345688899999998776655555554 34443
No 303
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=37.94 E-value=73 Score=28.51 Aligned_cols=47 Identities=9% Similarity=0.105 Sum_probs=29.2
Q ss_pred CChhhHHHHHHHHHHc-CCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 33 TDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 33 S~p~~~~~~~~~~~~~-g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+.|+....+++..++. ++.+|+|+.. +... ..+...++++++|++..
T Consensus 52 ~~p~~a~~~a~~li~~d~v~~iiG~~~-s~~~-~a~~~~~~~~~ip~i~~ 99 (357)
T cd06337 52 SNPNRAGLVAQELILTDKVDLLLAGGT-PDTT-NPVSDQCEANGVPCIST 99 (357)
T ss_pred CCHHHHHHHHHHHHhccCccEEEecCC-cchh-hHHHHHHHHhCCCeEEe
Confidence 5777777777777765 7888887433 2222 23444556677777764
No 304
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=37.89 E-value=54 Score=27.22 Aligned_cols=47 Identities=13% Similarity=0.087 Sum_probs=35.9
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecCCC-ChhhHHHHHHHhhccCceEEEccC
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVPHI-QLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTTG~-~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
.|+.+.+.++ +.+.|+++-=.|. ..+..+.+.+++++.++|++-+++
T Consensus 16 ~p~~aa~lLk---~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 16 SPKLVAMMIK---RAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATAD 63 (162)
T ss_pred CHHHHHHHHH---cCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc
Confidence 6877777776 4577877754554 345678899999999999999986
No 305
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=37.80 E-value=92 Score=27.28 Aligned_cols=45 Identities=7% Similarity=-0.038 Sum_probs=23.1
Q ss_pred ChhhHHHHHHHHHHc-CCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 34 DASTVYDNVKQATAF-GMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~-g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
+|+.....++..++. |+..|+|..+-. .-..+..+++++++|.+.
T Consensus 51 ~p~~a~~~a~~Li~~~~V~aiiG~~~s~--~~~a~~~~~~~~~vp~i~ 96 (333)
T cd06331 51 DPAFAAKAARRLIRDDKVDAVFGCYTSA--SRKAVLPVVERGRGLLFY 96 (333)
T ss_pred CHHHHHHHHHHHHhccCCcEEEecccHH--HHHHHHHHHHhcCceEEe
Confidence 455556666555555 666666653221 122344445555666554
No 306
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=37.75 E-value=1.9e+02 Score=25.62 Aligned_cols=72 Identities=15% Similarity=-0.004 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCChhh--------------------HHHHHHHhhccCceEEEccChhHHHHHHHHHH
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQLET--------------------VSALSAFCDKASMGCLIAPTLSIGSILLQQAA 95 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~~~--------------------~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~ 95 (219)
+.+...-++|.+.|++++. |=|+.++ .+.|++++ +.+.||+++..++....-+..++
T Consensus 76 ~gl~~l~~~~~~~Gl~~~t--~~~d~~~~~~l~~~~d~lkI~s~~~~n~~LL~~~a-~~gkPVilk~G~~~t~~e~~~Av 152 (260)
T TIGR01361 76 EGLKLLRRAADEHGLPVVT--EVMDPRDVEIVAEYADILQIGARNMQNFELLKEVG-KQGKPVLLKRGMGNTIEEWLYAA 152 (260)
T ss_pred HHHHHHHHHHHHhCCCEEE--eeCChhhHHHHHhhCCEEEECcccccCHHHHHHHh-cCCCcEEEeCCCCCCHHHHHHHH
Confidence 3344444555566666543 4455433 34445554 46778888888776666666666
Q ss_pred HHHhhhc-CCeEEEec
Q 027747 96 ISASFHY-KNVEIVES 110 (219)
Q Consensus 96 ~~aa~~~-~dieIiE~ 110 (219)
+.+...- .++-+.|.
T Consensus 153 e~i~~~Gn~~i~l~~r 168 (260)
T TIGR01361 153 EYILSSGNGNVILCER 168 (260)
T ss_pred HHHHHcCCCcEEEEEC
Confidence 6654432 56667664
No 307
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=37.75 E-value=54 Score=31.11 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=56.6
Q ss_pred HHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc--CCeEEEec--CC--C
Q 027747 40 DNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY--KNVEIVES--RP--N 113 (219)
Q Consensus 40 ~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~--~dieIiE~--Hh--~ 113 (219)
+.-..|+++|.++.+ |-||+.++ ++.++|.++++|++-++==..-+.-| +.+.++..+ -|+-.+|- |+ .
T Consensus 125 ~iq~lAL~~~~AVLv-TGGF~~s~--evi~lAne~~lPvlstsYDTFTVAtm--IN~Al~n~lIKkdI~~Vedi~~P~~~ 199 (432)
T COG4109 125 DIQLLALENGNAVLV-TGGFDVSD--EVIKLANEKGLPVLSTSYDTFTVATM--INKALSNQLIKKDIITVEDIMTPLED 199 (432)
T ss_pred HHHHHHHhcCCeEEE-eCCCCccH--HHHHhhcccCCceEEecccceeHHHH--HHHHHHHhhhhhheeeHHHhcccccc
Confidence 445677888877665 77898864 78899999999998876433333322 233333333 68888884 53 1
Q ss_pred -CCCCCcHHHHHHHHHHHhcC
Q 027747 114 -ARDFPSPDATQIANNLSNLG 133 (219)
Q Consensus 114 -K~DaPSGTA~~la~~i~~~~ 133 (219)
--=.++-|-..+-+...+.+
T Consensus 200 ~~yL~~~d~v~d~~~l~~kt~ 220 (432)
T COG4109 200 TSYLRETDTVEDWLDLVEKTG 220 (432)
T ss_pred ceeccccccHHHHHHHHHHcC
Confidence 23355667677776666644
No 308
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=37.72 E-value=83 Score=24.26 Aligned_cols=49 Identities=8% Similarity=0.070 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHcCCc-EEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 35 ASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p-~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++...+.++...+.|+. +++++..+-++==+.+.++|++.+.|++..|.
T Consensus 58 ~~~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~ 107 (123)
T PF07905_consen 58 EEELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPW 107 (123)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCC
Confidence 55689999999888775 66666645443336788999999999998876
No 309
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=37.61 E-value=59 Score=28.04 Aligned_cols=46 Identities=13% Similarity=0.108 Sum_probs=34.9
Q ss_pred ccCHHHHHhcccCCCCCcEEEECC-ChhhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
.+++.+.+. .+|++|=.| .++..-..+-.|+..|+|+|+--.|...
T Consensus 254 ~~~~~~~l~------~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~ 300 (355)
T cd03819 254 CSDMPAAYA------LADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGAR 300 (355)
T ss_pred cccHHHHHH------hCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcH
Confidence 346777776 589999887 6777777888899999999876555543
No 310
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=37.58 E-value=68 Score=25.66 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHH
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
.-.++.-..+++|--+|.---..++++++.|+++++...-.+|++|+.++.
T Consensus 38 vp~e~~VH~LEHGaV~i~Y~p~~~~~~v~~L~~l~~~~~~~~visP~~~~~ 88 (130)
T PF11303_consen 38 VPPERAVHNLEHGAVWITYDPCLPPDQVAKLKALAKSCLPYVVISPYPGLD 88 (130)
T ss_pred CChHHHHHhhhcCcEEEEECCCCCHHHHHHHHHHHhccCCcEEEecCCCCC
Confidence 346777888899999999888899999999999997656789999965543
No 311
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=37.50 E-value=1.4e+02 Score=25.00 Aligned_cols=40 Identities=33% Similarity=0.358 Sum_probs=25.4
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
..|+|.++. .+||+||..+.-. -....+.+.+.|+|++.-
T Consensus 47 ~~n~E~i~~-----l~PDlIi~~~~~~-~~~~~~~l~~~gi~v~~~ 86 (245)
T cd01144 47 QLDLERVLA-----LKPDLVIAWDDCN-VCAVVDQLRAAGIPVLVS 86 (245)
T ss_pred CCCHHHHHh-----CCCCEEEEecCCC-HHHHHHHHHHcCCcEEEe
Confidence 468888886 4799887643211 123366667788887654
No 312
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=37.44 E-value=1.1e+02 Score=27.19 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=30.1
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCc----EEEecCCCChhhHHHH
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMR----SVVYVPHIQLETVSAL 67 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p----~ViGTTG~~~~~~~~l 67 (219)
.+||+|+-+..+..+...++.+.+.|.. .+++++ +.+.++..+
T Consensus 187 ~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~~~~~ 233 (348)
T cd06355 187 AKPDVVVSTVNGDSNVAFFKQLKAAGITASKVPVLSFS-VAEEELRGI 233 (348)
T ss_pred hCCCEEEEeccCCchHHHHHHHHHcCCCccCCeeEEcc-ccHHHHhhc
Confidence 3799998888888888889999999874 345544 444333333
No 313
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=37.38 E-value=80 Score=29.12 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCce
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~ 77 (219)
...++++.+.|+|+++-|-.-+.+++..--++.++.+.+
T Consensus 123 ~pLL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~ 161 (329)
T TIGR03569 123 APLLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTP 161 (329)
T ss_pred HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 567788888888888877766666665555555544443
No 314
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=37.38 E-value=2.8e+02 Score=24.94 Aligned_cols=23 Identities=13% Similarity=-0.034 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHcCCc--EEEecCC
Q 027747 36 STVYDNVKQATAFGMR--SVVYVPH 58 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p--~ViGTTG 58 (219)
+.+..+++++++.|+. +|.||||
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstG 53 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFG 53 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccc
Confidence 3445555555555543 2235555
No 315
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=37.31 E-value=1.3e+02 Score=26.73 Aligned_cols=86 Identities=9% Similarity=0.010 Sum_probs=53.8
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCC-----------hh-hHHHHHHHHHHcCCcEEEe--cCCCChhhHHHHHHHh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTD-----------AS-TVYDNVKQATAFGMRSVVY--VPHIQLETVSALSAFC 71 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~-----------p~-~~~~~~~~~~~~g~p~ViG--TTG~~~~~~~~l~~~a 71 (219)
+.+|+++|++++. ++|.+|==|. |- +.....+.+...++.+|-| .+|++.|+++.-..+.
T Consensus 59 ~A~i~~tL~eAl~------d~~~v~aTtar~r~~~~~~~~P~e~~~~l~~~~~~~~vAlvFGRE~~GLtNeEl~~c~~~v 132 (242)
T COG0565 59 NAKIVDTLEEALA------DCDLVVATTARSRDLLRPLRTPREAAPELLEKAKGGKVALVFGRERVGLTNEELALCDVLV 132 (242)
T ss_pred cCeeecCHHHHhc------CCCEEEEeccccCcccccccCHHHHHHHHHHHhcCCCeEEEECCccCCCCHHHHHhhhEEE
Confidence 3578999999997 6888874432 21 2222222222258899999 5899998876555443
Q ss_pred hccCceEEEccChhHHHHHHHHHHHH
Q 027747 72 DKASMGCLIAPTLSIGSILLQQAAIS 97 (219)
Q Consensus 72 ~~~~~~vv~spNfSlGv~ll~~~~~~ 97 (219)
.=.-.|-.-|=|.|--|.++.+-+..
T Consensus 133 ~IP~~p~Y~sLNLa~AV~ii~YEl~~ 158 (242)
T COG0565 133 TIPANPDYPSLNLAQAVQVILYELRK 158 (242)
T ss_pred ecCCCCccccccHHHHHHHHHHHHHH
Confidence 21223345556888888887665544
No 316
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=37.16 E-value=59 Score=24.73 Aligned_cols=35 Identities=9% Similarity=-0.004 Sum_probs=28.4
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI 59 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~ 59 (219)
.+|+|+..+..+...+....+++.|+.+|-=++-|
T Consensus 66 ~~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 66 DVDVVFLALPHGASKELAPKLLKAGIKVIDLSGDF 100 (121)
T ss_dssp TESEEEE-SCHHHHHHHHHHHHHTTSEEEESSSTT
T ss_pred cCCEEEecCchhHHHHHHHHHhhCCcEEEeCCHHH
Confidence 69999999999999999999999999666544434
No 317
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=37.15 E-value=2.3e+02 Score=24.55 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=23.7
Q ss_pred CCCcEEEECCC-hhhHHHHHHHHHHcCCcEEEe
Q 027747 24 KARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 24 ~~~DVvIDFS~-p~~~~~~~~~~~~~g~p~ViG 55 (219)
..+|.+|-++. +....+.++.+.+.|+|+|.-
T Consensus 53 ~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~ 85 (302)
T TIGR02634 53 RGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAY 85 (302)
T ss_pred cCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEe
Confidence 36898777764 344577888889999998764
No 318
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=36.91 E-value=85 Score=23.62 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=21.7
Q ss_pred hhhHHHHHHHHHHcCCc-EE---EecCCCChhhHHHH
Q 027747 35 ASTVYDNVKQATAFGMR-SV---VYVPHIQLETVSAL 67 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p-~V---iGTTG~~~~~~~~l 67 (219)
++.+.++++.+.+.|++ ++ +|..|.++++++++
T Consensus 126 ~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~ 162 (166)
T PF04055_consen 126 FERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEET 162 (166)
T ss_dssp HHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHH
Confidence 45667888999999988 44 45555555544443
No 319
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=36.90 E-value=1e+02 Score=26.84 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=41.8
Q ss_pred CCc-EEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEEEccChhH
Q 027747 25 ARA-VVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPTLSI 86 (219)
Q Consensus 25 ~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~spNfSl 86 (219)
..+ +=|=|++|.+....-..+.+.+ .++||+ |=++++|.++..+ .+--.++|||+--
T Consensus 38 Gi~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~----aGa~fiVsP~~~~ 96 (211)
T COG0800 38 GIPAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIA----AGAQFIVSPGLNP 96 (211)
T ss_pred CCCeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHH----cCCCEEECCCCCH
Confidence 345 4577889998887777777888 788886 4488877544433 6678899999864
No 320
>PLN02704 flavonol synthase
Probab=36.85 E-value=74 Score=29.01 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=32.0
Q ss_pred EEECCCh---hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhh
Q 027747 29 VIDFTDA---STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD 72 (219)
Q Consensus 29 vIDFS~p---~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~ 72 (219)
+|||+.+ +.+.+..+.|.+.|.=.|++ .|.+.+.++++.++++
T Consensus 45 vIDls~~~~~~~~~~l~~Ac~~~GFf~l~n-HGI~~~l~~~~~~~~~ 90 (335)
T PLN02704 45 TIDLSDPDEEKLTRLIAEASKEWGMFQIVN-HGIPSEVISKLQKVGK 90 (335)
T ss_pred eEECCCccHHHHHHHHHHHHHHcCEEEEEc-CCCCHHHHHHHHHHHH
Confidence 8999876 44566777888889888887 7888776677666553
No 321
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=36.81 E-value=1.1e+02 Score=26.74 Aligned_cols=39 Identities=8% Similarity=0.023 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCce
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~ 77 (219)
...+..+++.|..+|+-.|.+++++.+.+.+++++.+..
T Consensus 65 ~~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~ 103 (300)
T PHA02530 65 EAAALAALKSGKSVIISDTNLNPERRRKWKELAKELGAE 103 (300)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCe
Confidence 344566667888888888888888888888777655543
No 322
>TIGR03586 PseI pseudaminic acid synthase.
Probab=36.68 E-value=1.4e+02 Score=27.43 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCcEEEecCCCChhhHHHHHHHh
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a 71 (219)
...++.+.+.|+|+++-|-+.+.+++...-++.
T Consensus 124 ~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i 156 (327)
T TIGR03586 124 LPLIRYVAKTGKPIIMSTGIATLEEIQEAVEAC 156 (327)
T ss_pred HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHH
Confidence 445566666666666665555555544433333
No 323
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=36.67 E-value=1.5e+02 Score=23.27 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=25.3
Q ss_pred CCcEEEECCC-----hhhHHHHHHHHHHcCCcEEE--ecCCCC
Q 027747 25 ARAVVIDFTD-----ASTVYDNVKQATAFGMRSVV--YVPHIQ 60 (219)
Q Consensus 25 ~~DVvIDFS~-----p~~~~~~~~~~~~~g~p~Vi--GTTG~~ 60 (219)
++|+||+.-. .+.+...++.|.+.|++-++ +++|..
T Consensus 60 ~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~~ 102 (183)
T PF13460_consen 60 GADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGVY 102 (183)
T ss_dssp TSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTGT
T ss_pred hcchhhhhhhhhcccccccccccccccccccccceeeeccccC
Confidence 6899998876 45567777888888886555 444443
No 324
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=36.51 E-value=1.1e+02 Score=26.72 Aligned_cols=29 Identities=7% Similarity=-0.006 Sum_probs=13.0
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEE
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~Vi 54 (219)
.++||-.............+.+.++|++.
T Consensus 67 V~aviG~~~s~~~~a~~~~~~~~~vp~i~ 95 (334)
T cd06327 67 VDMIVGGPNSAVALAVQEVAREKKKIYIV 95 (334)
T ss_pred ceEEECCccHHHHHHHHHHHHHhCceEEe
Confidence 44444443333344444444445555444
No 325
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor. Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.
Probab=36.41 E-value=57 Score=30.58 Aligned_cols=38 Identities=13% Similarity=-0.004 Sum_probs=32.0
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCc---EEEecCCCCh
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMR---SVVYVPHIQL 61 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p---~ViGTTG~~~ 61 (219)
.++||||=|+.++.+...++.+.+.|.. +.|||.||..
T Consensus 230 ~~~~vIvl~~~~~~~~~ll~~a~~~~~~g~~~wig~d~~~~ 270 (463)
T cd06376 230 PNARAVIIFANEDDIRRVLEAAKRANQVGHFLWVGSDSWGA 270 (463)
T ss_pred CCCeEEEEecChHHHHHHHHHHHhcCCcCceEEEEeccccc
Confidence 3689999899999999999999988774 5689999964
No 326
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=36.40 E-value=72 Score=29.06 Aligned_cols=42 Identities=17% Similarity=0.146 Sum_probs=31.4
Q ss_pred EEECCCh---hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHh
Q 027747 29 VIDFTDA---STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 29 vIDFS~p---~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a 71 (219)
+|||+.+ .++.+..+.|.+.|.=.|++ .|.+.+.++++.+++
T Consensus 17 ~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~n-HGI~~~l~~~~~~~~ 61 (332)
T PLN03002 17 CIDLANDDLNHSVASLKQACLDCGFFYVIN-HGINEEFMDDVFEQS 61 (332)
T ss_pred EEeCCchhHHHHHHHHHHHHHhCCEEEEeC-CCCCHHHHHHHHHHH
Confidence 8999864 34556668888889888887 888887777776554
No 327
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=36.36 E-value=1.7e+02 Score=25.95 Aligned_cols=70 Identities=16% Similarity=0.144 Sum_probs=40.5
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEEC-CChhhHHHHHHH---HH---HcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDF-TDASTVYDNVKQ---AT---AFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDF-S~p~~~~~~~~~---~~---~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+...++..++.. .+|+||=. ..++.+.+.+.- .. ..| .+|+=+|..+++...++.+.+.++++..
T Consensus 42 g~~~~~s~~~~~~------~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g-~ivvd~sT~~p~~~~~~~~~~~~~G~~~ 114 (292)
T PRK15059 42 GAVSVETARQVTE------ASDIIFIMVPDTPQVEEVLFGENGCTKASLKG-KTIVDMSSISPIETKRFARQVNELGGDY 114 (292)
T ss_pred CCeecCCHHHHHh------cCCEEEEeCCChHHHHHHHcCCcchhccCCCC-CEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence 4455566777664 68866633 333445554421 11 223 3555555567777777877777777777
Q ss_pred EEcc
Q 027747 79 LIAP 82 (219)
Q Consensus 79 v~sp 82 (219)
+=+|
T Consensus 115 vdaP 118 (292)
T PRK15059 115 LDAP 118 (292)
T ss_pred EEec
Confidence 7776
No 328
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=36.19 E-value=3e+02 Score=24.09 Aligned_cols=84 Identities=11% Similarity=-0.007 Sum_probs=51.6
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC---------------CCChh-hHHH-HHHHhhc----cCceEEEcc
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP---------------HIQLE-TVSA-LSAFCDK----ASMGCLIAP 82 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT---------------G~~~~-~~~~-l~~~a~~----~~~~vv~sp 82 (219)
+++++||-......+......+.++++|+|..++ +...+ +... +..+.++ +++.+++..
T Consensus 66 ~~v~~iiG~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 145 (344)
T cd06348 66 DRVLAIIGPTLSQQAFAADPIAERAGVPVVGPSNTAKGIPEIGPYVFRVSAPEAVVAPAAIAAALKLNPGIKRVAVFYAQ 145 (344)
T ss_pred cCceEEECCCCcHHHHhhhHHHHhCCCCEEeccCCCCCcCCCCCeEEEccCcHHHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 4689999887777777778889999999997432 11111 1212 2232222 456677777
Q ss_pred ChhHHHHHHHHHHHHHhhhcCCeEEEe
Q 027747 83 TLSIGSILLQQAAISASFHYKNVEIVE 109 (219)
Q Consensus 83 NfSlGv~ll~~~~~~aa~~~~dieIiE 109 (219)
|-+.|-.+...+-+.+.+ .+++|+.
T Consensus 146 ~~~~g~~~~~~~~~~~~~--~g~~v~~ 170 (344)
T cd06348 146 DDAFSVSETEIFQKALRD--QGLNLVT 170 (344)
T ss_pred CchHHHHHHHHHHHHHHH--cCCEEEE
Confidence 877787666655555544 3555554
No 329
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=36.16 E-value=1.6e+02 Score=20.94 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=35.9
Q ss_pred ECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEE-EccCh
Q 027747 31 DFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTL 84 (219)
Q Consensus 31 DFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv-~spNf 84 (219)
||+.-+.+...+..+.+.--.+|+=++|-...--....++|++.+++++ +.||+
T Consensus 13 ~~~D~~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~~~~adW 67 (71)
T PF10686_consen 13 DWTDHELIWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPVIRFPADW 67 (71)
T ss_pred ccccHHHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCeeEEeCcCh
Confidence 7888888888888888776666665555422222345677888888865 44554
No 330
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=36.11 E-value=1.1e+02 Score=23.71 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=6.7
Q ss_pred HHHHHHHHHcCCcEE
Q 027747 39 YDNVKQATAFGMRSV 53 (219)
Q Consensus 39 ~~~~~~~~~~g~p~V 53 (219)
.....+|.+.++|++
T Consensus 59 ~~i~~lc~~~~Ip~~ 73 (117)
T TIGR03677 59 AHLPALCEEKGIPYV 73 (117)
T ss_pred HHHHHHHHHcCCCEE
Confidence 344444444444443
No 331
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.93 E-value=2.3e+02 Score=23.49 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=19.5
Q ss_pred CCcEEEECC----ChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFT----DASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS----~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=++ .+....+.++.+.+.|+|+|.=
T Consensus 55 ~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 55 GVRGVVFISSLHADTHADHSHYERLAERGLPVVLV 89 (273)
T ss_pred CCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEE
Confidence 678655553 1224455677778888887764
No 332
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=35.89 E-value=1.4e+02 Score=26.98 Aligned_cols=68 Identities=12% Similarity=0.056 Sum_probs=45.1
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChh------hH-HHHHHHhhccC--ceEEE
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE------TV-SALSAFCDKAS--MGCLI 80 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~------~~-~~l~~~a~~~~--~~vv~ 80 (219)
++.++|... .....- -.+++.+.+.+...++.|.+.+.|+++.++-..-. .+ ..++.++++.+ +||.+
T Consensus 5 ~~~~lL~~A-~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~l 82 (285)
T PRK07709 5 SMKEMLNKA-LEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAI 82 (285)
T ss_pred cHHHHHHHH-HHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCcEEE
Confidence 344555431 112344 37888999999999999999999999988642221 11 23566676665 78887
No 333
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=35.88 E-value=95 Score=21.98 Aligned_cols=55 Identities=11% Similarity=0.101 Sum_probs=31.8
Q ss_pred cccccCHHHHHhcccCCCCCc-EEEECCChh-hHHHHHHHHHH--cCCcEEEecCCCChh
Q 027747 7 IPVMSDLTMVLGSISQSKARA-VVIDFTDAS-TVYDNVKQATA--FGMRSVVYVPHIQLE 62 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~-~~~~~~~~~~~--~g~p~ViGTTG~~~~ 62 (219)
+...++.++++.... ...|| +++|+..|. ...+.++...+ ...|+|+=|+--+.+
T Consensus 26 v~~~~~~~~~~~~~~-~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~ 84 (112)
T PF00072_consen 26 VTTASSGEEALELLK-KHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSD 84 (112)
T ss_dssp EEEESSHHHHHHHHH-HSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHH
T ss_pred EEEECCHHHHHHHhc-ccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHH
Confidence 445667777665542 24588 588887765 23344444444 457777777544443
No 334
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=35.75 E-value=2e+02 Score=24.86 Aligned_cols=68 Identities=4% Similarity=-0.006 Sum_probs=44.2
Q ss_pred cccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH--cCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 9 VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 9 v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~--~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
...+..+++. .+|+||=...|..+.+.++.... .+..+|+-..|.+.++++.+ .......+-+-||..
T Consensus 47 ~~~~~~~~~~------~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~---~~~~~~vvr~mPn~p 116 (260)
T PTZ00431 47 YLQSNEELAK------TCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEEM---VGVEAKIVRVMPNTP 116 (260)
T ss_pred EeCChHHHHH------hCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHHH---cCCCCeEEEECCCch
Confidence 3445555554 68998888999998888876653 24578889999997655444 221112334666665
No 335
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=35.73 E-value=1.2e+02 Score=26.19 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=27.3
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 58 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG 58 (219)
++|.++. .+||+||.... ...+....-.+.++|+|.-..+
T Consensus 107 n~E~i~~-----lkPDlIi~~~~--~~~~~~~~~~~~~~pvv~~~~~ 146 (319)
T COG0614 107 NLEKIVA-----LKPDLIIASSS--SQDDLIYKLLSLGAPVVVVDYG 146 (319)
T ss_pred CHHHhhh-----cCCCEEEEecc--cchhHHHHHHhcCCCEEEECCc
Confidence 5677765 47888887776 3455566666788888776655
No 336
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=35.70 E-value=1e+02 Score=28.88 Aligned_cols=46 Identities=15% Similarity=0.083 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+.+...++...+.+.|+++.=.|-.....+.|.+++++.++|++-+
T Consensus 199 ~~i~~~~~~l~~AkrPvi~~G~g~~~~a~~~l~~lae~~~~PV~tt 244 (432)
T TIGR00173 199 ESLDELWDRLNQAKRGVIVAGPLPPAEDAEALAALAEALGWPLLAD 244 (432)
T ss_pred hhHHHHHHHHhhcCCcEEEEcCCCcHHHHHHHHHHHHhCCCeEEEe
Confidence 3455555555566777777545543334567778888788888764
No 337
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=35.52 E-value=77 Score=27.74 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=31.1
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCC--cEEEecCCCChh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGM--RSVVYVPHIQLE 62 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~--p~ViGTTG~~~~ 62 (219)
++|+||=|..++.+...++.+.+.|. ..+++++||...
T Consensus 217 ~~~vvv~~~~~~~~~~~~~~a~~~g~~~~~~i~~~~~~~~ 256 (348)
T cd06350 217 TARVIVVFGDEDDALRLFCEAYKLGMTGKYWIISTDWDTS 256 (348)
T ss_pred CCcEEEEEeCcHHHHHHHHHHHHhCCCCeEEEEEccccCc
Confidence 57999989888888889999999886 466788888754
No 338
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=34.92 E-value=83 Score=28.71 Aligned_cols=42 Identities=21% Similarity=0.277 Sum_probs=31.0
Q ss_pred EEECCCh---hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHh
Q 027747 29 VIDFTDA---STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 29 vIDFS~p---~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a 71 (219)
+||+|.+ +.+.+..+.|.+.|.=.|++ .|.+.+.++++.+.+
T Consensus 40 vIDls~~~~~~~~~~l~~Ac~~~GFf~v~n-HGI~~~l~~~~~~~~ 84 (337)
T PLN02639 40 VIDLGSPDRAQVVQQIGDACRRYGFFQVIN-HGVSAELVEKMLAVA 84 (337)
T ss_pred eEECCCccHHHHHHHHHHHHHhCCEEEEEc-CCCCHHHHHHHHHHH
Confidence 8999864 35567777888888888887 778877777666654
No 339
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=34.87 E-value=61 Score=30.15 Aligned_cols=68 Identities=13% Similarity=0.242 Sum_probs=47.0
Q ss_pred CCCccccccCHHHHHhcccCCCCCcEEEE-CCC-----hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCc
Q 027747 3 QPLEIPVMSDLTMVLGSISQSKARAVVID-FTD-----ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 76 (219)
Q Consensus 3 ~~~~~~v~~~l~~~l~~~~~~~~~DVvID-FS~-----p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~ 76 (219)
...|++|.++.+++++. ..|++|= -.. |+...+.+..|++.|+.+|.|===+ -+|...+.++|++.++
T Consensus 50 ~~~~vpii~s~~~~~e~-----~~e~liIgia~~gG~~~~~~~~~i~eAl~~G~nVvsglh~~-ls~dp~~~k~A~~~G~ 123 (339)
T COG3367 50 DKADVPIISSVEEALEG-----LAEALIIGIAPPGGVLPESWREYIVEALEAGMNVVSGLHSF-LSDDPEFVKLAERTGV 123 (339)
T ss_pred ccCCCcccccHHHHHhc-----CcceEEEEeecCCCcCcHHHHHHHHHHHHhCchhhhhhHHH-hhcChHHHHHHHHcCC
Confidence 45789999999999874 3465443 332 3566788899999999999764434 3455677777766555
No 340
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=34.85 E-value=71 Score=26.70 Aligned_cols=43 Identities=16% Similarity=0.051 Sum_probs=32.3
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCC
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI 59 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~ 59 (219)
.++.+++. .+|++|=.|..+.....+-.|+..|+|+|+--.|.
T Consensus 255 ~~~~~~~~------~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~ 297 (359)
T cd03808 255 DDVPELLA------AADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG 297 (359)
T ss_pred ccHHHHHH------hccEEEecCcccCcchHHHHHHHcCCCEEEecCCC
Confidence 46677775 58988877777777777888889999988754443
No 341
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=34.71 E-value=89 Score=29.83 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=21.5
Q ss_pred CCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 49 GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 49 g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
+..+||.|+ .+......|.++|.+.++|++++..++
T Consensus 112 ~fdiVI~t~-~~~~~~~~L~~~c~~~~iPlI~~~s~G 147 (425)
T cd01493 112 QFTVVIATN-LPESTLLRLADVLWSANIPLLYVRSYG 147 (425)
T ss_pred CCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEeccc
Confidence 335666544 344455566677777777777666544
No 342
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=34.67 E-value=76 Score=28.65 Aligned_cols=41 Identities=7% Similarity=0.124 Sum_probs=19.8
Q ss_pred ccCHHHHHhcccCCCCC-cEEEECCChhhHHHHHHHHHHcCCc
Q 027747 10 MSDLTMVLGSISQSKAR-AVVIDFTDASTVYDNVKQATAFGMR 51 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~-DVvIDFS~p~~~~~~~~~~~~~g~p 51 (219)
..++.++++.+.+.... ++.| .|+...+.+.++...+.|+.
T Consensus 75 r~dl~~li~~i~~~~~l~~i~i-tTNG~ll~~~~~~L~~aGl~ 116 (329)
T PRK13361 75 RRGCDQLVARLGKLPGLEELSL-TTNGSRLARFAAELADAGLK 116 (329)
T ss_pred cccHHHHHHHHHhCCCCceEEE-EeChhHHHHHHHHHHHcCCC
Confidence 34555555433221111 3434 46666555666666666654
No 343
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=34.66 E-value=1.3e+02 Score=26.24 Aligned_cols=33 Identities=6% Similarity=-0.177 Sum_probs=16.1
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|++||++....+...++.+...|.=+.+|++
T Consensus 212 ~~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~ 244 (324)
T cd08291 212 NATIFFDAVGGGLTGQILLAMPYGSTLYVYGYL 244 (324)
T ss_pred CCcEEEECCCcHHHHHHHHhhCCCCEEEEEEec
Confidence 355555555544444444444444444445543
No 344
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=34.63 E-value=1.1e+02 Score=28.07 Aligned_cols=63 Identities=11% Similarity=0.052 Sum_probs=47.6
Q ss_pred CcEEEECCChhhHHHHHHHHHHcC-CcEEEecCC---CChhhHHHHHHHhhccCceEEEccChhHHHH
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFG-MRSVVYVPH---IQLETVSALSAFCDKASMGCLIAPTLSIGSI 89 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g-~p~ViGTTG---~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ 89 (219)
++|.|=+..|..-.+.++.+++.+ .-+|+-+.| ...+..+.|+++.+ +++|||.++----|..
T Consensus 212 ~~V~il~~~pG~~~~~l~~~~~~~~~GiVl~~~G~Gn~p~~~~~~l~~a~~-~Gi~VV~~Sq~~~G~v 278 (336)
T TIGR00519 212 EKVALIKIYPGISPDIIRNYLSKGYKGIVIEGTGLGHAPQNKLQELQEASD-RGVVVVMTTQCLNGRV 278 (336)
T ss_pred CCEEEEEEcCCCCHHHHHHHHhCCCCEEEEeeECCCCCCHHHHHHHHHHHH-CCCEEEEeCCCCCCcc
Confidence 678888899988888888888886 567777666 44455777887764 6899999877555644
No 345
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=34.52 E-value=77 Score=28.63 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=40.0
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 91 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll 91 (219)
+++|-|+........+.+. +..+|+-|+. +.+....|.++|+++++|++++.-..+.-.++
T Consensus 86 Np~V~V~~~~~~~~~~~l~-----~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf 146 (286)
T cd01491 86 NPYVPVTVSTGPLTTDELL-----KFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRGLFGSIF 146 (286)
T ss_pred CCCCEEEEEeccCCHHHHh-----cCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccccEEEEE
Confidence 5777776654433333332 3347777764 66667789999999999999987766555443
No 346
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=34.42 E-value=69 Score=26.65 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=7.2
Q ss_pred HHHHHHcCCcEEEe
Q 027747 42 VKQATAFGMRSVVY 55 (219)
Q Consensus 42 ~~~~~~~g~p~ViG 55 (219)
.+.+.+.|.-+|.+
T Consensus 37 ~~~l~~~g~~vv~~ 50 (233)
T PF05368_consen 37 AQQLQALGAEVVEA 50 (233)
T ss_dssp HHHHHHTTTEEEES
T ss_pred hhhhhcccceEeec
Confidence 34444556665543
No 347
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=34.12 E-value=1.1e+02 Score=26.49 Aligned_cols=64 Identities=17% Similarity=0.062 Sum_probs=42.3
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCc----EEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHH
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMR----SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 94 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p----~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~ 94 (219)
..+|+|+ ||++..+...+.++-+.+.+ ..+.+-|- ...+.+++.+++..+.++...--.+...+
T Consensus 174 ~~~d~v~-ftS~~~v~~~~~~~~~~~~~~~~~~~v~~IG~------~Ta~~l~~~G~~~~~~~~~~~~~~l~~al 241 (248)
T COG1587 174 GEVDAVV-FTSSSAVRALLALAPESGIEFLERKRVASIGP------RTAETLKELGITVDIAAEKPTLEALADAL 241 (248)
T ss_pred CCCCEEE-EeCHHHHHHHHHHccccchhHhhCceEEEecH------HHHHHHHHcCCcceecccccchHHHHHHH
Confidence 4789766 99999999999999888863 22222332 33445566777777777766554444333
No 348
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=33.66 E-value=1.1e+02 Score=23.28 Aligned_cols=30 Identities=10% Similarity=0.291 Sum_probs=13.9
Q ss_pred CCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 49 GMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 49 g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
+..+||=.+--+++..+++..+|+.+++|+
T Consensus 33 k~~lVI~A~D~s~~~kkki~~~~~~~~vp~ 62 (104)
T PRK05583 33 KVYLIIISNDISENSKNKFKNYCNKYNIPY 62 (104)
T ss_pred CceEEEEeCCCCHhHHHHHHHHHHHcCCCE
Confidence 344444444444444444444444444444
No 349
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=33.63 E-value=1.3e+02 Score=28.04 Aligned_cols=68 Identities=7% Similarity=0.062 Sum_probs=45.1
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hhH-HHHHHHhhcc-CceEEE
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ETV-SALSAFCDKA-SMGCLI 80 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~~-~~l~~~a~~~-~~~vv~ 80 (219)
++.++|... .....- -..++.+.+.+...++.|.+.+.|+++.++-... +.+ .-++.++++. .+||++
T Consensus 5 ~~k~lL~~A-~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~~VPVaL 80 (347)
T PRK13399 5 TLRQLLDHA-AENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYPDIPICL 80 (347)
T ss_pred cHHHHHHHH-HHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 344555432 112344 3789999999999999999999999999864322 222 2345566666 388876
No 350
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=33.52 E-value=1.4e+02 Score=25.60 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHcCCcEEEecCCCC-----hhh--------HHHHHHHhhccCceEEEcc
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHIQ-----LET--------VSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~~-----~~~--------~~~l~~~a~~~~~~vv~sp 82 (219)
.+.+.++.|.+.|.+.|.+.+|.. +++ +.++.+.+++.++.+.+=|
T Consensus 86 ~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 86 GVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 367888999999999988877752 222 1233344566778877743
No 351
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.41 E-value=87 Score=25.59 Aligned_cols=50 Identities=14% Similarity=0.205 Sum_probs=36.3
Q ss_pred CcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 26 RAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 26 ~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
.++ ..=|++++-+...++.+.+.|+-+|+|... ..++|++.++|.++--.
T Consensus 101 ~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~--------~~~~A~~~gl~~v~i~s 151 (176)
T PF06506_consen 101 VDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGV--------VCRLARKLGLPGVLIES 151 (176)
T ss_dssp -EEEEEEESSHHHHHHHHHHHHHTT--EEEESHH--------HHHHHHHTTSEEEESS-
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCcEEECCHH--------HHHHHHHcCCcEEEEEe
Confidence 453 666889999999999999999999999652 34566778888887643
No 352
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=33.37 E-value=62 Score=29.96 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=32.0
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCC---cEEEecCCCChh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGM---RSVVYVPHIQLE 62 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~---p~ViGTTG~~~~ 62 (219)
++||||=|..++.+...++.+.+.|. -..+|+.||...
T Consensus 230 ~a~viil~~~~~~~~~~~~~a~~~g~~~~~~~i~~~~~~~~ 270 (452)
T cd06362 230 NARVVVLFCREDDIRGLLAAAKRLNAEGHFQWIASDGWGAR 270 (452)
T ss_pred CCeEEEEEcChHHHHHHHHHHHHcCCcCceEEEEecccccc
Confidence 58988888888888999999999988 367899998753
No 353
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.33 E-value=2.8e+02 Score=22.92 Aligned_cols=32 Identities=13% Similarity=0.197 Sum_probs=19.9
Q ss_pred CCCcEEEEC-CChhhHHHHHHHHHHcCCcEEEe
Q 027747 24 KARAVVIDF-TDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 24 ~~~DVvIDF-S~p~~~~~~~~~~~~~g~p~ViG 55 (219)
..+|.+|=. +.++...+.++.+.+.|+|+|.-
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~ 86 (267)
T cd06322 54 KKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITV 86 (267)
T ss_pred cCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEE
Confidence 367854432 33444556677777888888764
No 354
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=33.33 E-value=1.3e+02 Score=23.51 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=8.0
Q ss_pred HHHHHHHHHHcCCcEEEe
Q 027747 38 VYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViG 55 (219)
+.+.+..|.+.|. ++.|
T Consensus 18 i~~lL~la~ragk-lv~G 34 (122)
T PRK04175 18 ALEAVEKARDTGK-IKKG 34 (122)
T ss_pred HHHHHHHHHHcCC-EeEc
Confidence 3444555555542 4444
No 355
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=33.09 E-value=2.6e+02 Score=24.14 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=22.4
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|.+|=++......+.++.+.+.|+|+|+--+
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~giPvV~~~~ 90 (305)
T cd06324 58 KPDALIFTNEKSVAPELLRLAEGAGVKLFLVNS 90 (305)
T ss_pred CCCEEEEcCCccchHHHHHHHHhCCCeEEEEec
Confidence 688655454433456678888899999886543
No 356
>PRK07283 hypothetical protein; Provisional
Probab=32.89 E-value=1.5e+02 Score=22.23 Aligned_cols=6 Identities=0% Similarity=0.163 Sum_probs=2.3
Q ss_pred HcCCcE
Q 027747 47 AFGMRS 52 (219)
Q Consensus 47 ~~g~p~ 52 (219)
.+++|+
T Consensus 58 ~~~Vp~ 63 (98)
T PRK07283 58 YYQVEV 63 (98)
T ss_pred HcCCCE
Confidence 334443
No 357
>PRK10595 SOS cell division inhibitor; Provisional
Probab=32.81 E-value=2.5e+02 Score=23.47 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=40.2
Q ss_pred EEEECCChhhHHHHHHHHHHcCC-cEEEec-C-CCChhhHHHHHHHhhccCceEE
Q 027747 28 VVIDFTDASTVYDNVKQATAFGM-RSVVYV-P-HIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~-p~ViGT-T-G~~~~~~~~l~~~a~~~~~~vv 79 (219)
++|.=..+......++.|++.|- ..|+|- . -++.++..+|.-+|++.+...+
T Consensus 84 l~v~~~~~~d~Lwa~EqaLrsG~~~aVL~Wlp~~l~~~~~RRLQlAAe~g~~l~f 138 (164)
T PRK10595 84 MQLSQLSPCHTVEAMERALRTGNYSVVLGWLPDELTEEEHARLVDAAQEGNAMGF 138 (164)
T ss_pred EEEecCCcHHHHHHHHHHHhhCCCcEEEECCcccCCHHHHHHHHHHHHhCCCEEE
Confidence 45666677677788899998875 999996 4 7888889999988877665443
No 358
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=32.77 E-value=1.2e+02 Score=19.88 Aligned_cols=37 Identities=11% Similarity=0.184 Sum_probs=20.2
Q ss_pred HcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 47 AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 47 ~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+.+.+++.=+.+.++++.+.+.+.-++....++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~ 45 (82)
T smart00490 9 ELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATD 45 (82)
T ss_pred HCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 4466666666666665554444433334456666655
No 359
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=32.77 E-value=1.2e+02 Score=25.70 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=8.3
Q ss_pred HHHHHHhhccCceEEE
Q 027747 65 SALSAFCDKASMGCLI 80 (219)
Q Consensus 65 ~~l~~~a~~~~~~vv~ 80 (219)
+.|.++|+++++++++
T Consensus 64 ~~l~~~a~~~~i~iv~ 79 (255)
T cd07581 64 SALARLARELGITVVA 79 (255)
T ss_pred HHHHHHHHHcCeEEEE
Confidence 4455555555555554
No 360
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=32.77 E-value=83 Score=26.15 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=31.9
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
.++.+++. .+|++|--|..+...-.+-.|+..|+|+|+...+...
T Consensus 244 ~~~~~~~~------~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~ 288 (348)
T cd03820 244 KNIEEYYA------KASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP 288 (348)
T ss_pred chHHHHHH------hCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCch
Confidence 46666775 5888887776666667778888889998865544433
No 361
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=32.60 E-value=2.6e+02 Score=25.28 Aligned_cols=60 Identities=17% Similarity=0.319 Sum_probs=41.3
Q ss_pred CCcEEEECCCh---hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc-----cChhHHHHH
Q 027747 25 ARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA-----PTLSIGSIL 90 (219)
Q Consensus 25 ~~DVvIDFS~p---~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s-----pNfSlGv~l 90 (219)
+-|++|=+|.- ..+.+.++.|.+.|.++| +.|.-+ .|.++|++.+.|++.. +.+|++..+
T Consensus 78 ~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vI-aIT~~~-----~L~~~a~~~~~~~i~ip~~~~~r~s~~~ll 145 (337)
T PRK08674 78 EKTLVIAVSYSGNTEETLSAVEQALKRGAKII-AITSGG-----KLKEMAKEHGLPVIIVPGGYQPRAALGYLF 145 (337)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEE-EECCCc-----hHHHHHHhcCCeEEEeCCCCcchhhHHHHH
Confidence 56888888754 445677889999999866 444422 3778887777788764 557766544
No 362
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=32.42 E-value=76 Score=27.19 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=36.1
Q ss_pred HHHHHHHHHcCCcEEEecCCCChh----------hHHHHHHHhhccCceEEEccC---------hhHHHHHHH
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQLE----------TVSALSAFCDKASMGCLIAPT---------LSIGSILLQ 92 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~~~----------~~~~l~~~a~~~~~~vv~spN---------fSlGv~ll~ 92 (219)
...++.|.++|+.+=|-++++-.. ....+-+++++.++|+++++- |.-+++++.
T Consensus 121 ~~~~~~a~~~gv~lEIn~s~~~~~~~~~r~~~~~~~~~~~~~~~~~g~piiisSdAh~~~~l~~~~~~~~l~~ 193 (237)
T PRK00912 121 HVLAKEAARNNVAIEFNLRDILKSRGGRRARTLSNFRDNLALARKYDFPLVLTSGAMSCYDLRSPREMIALAE 193 (237)
T ss_pred HHHHHHHHHCCeEEEEEchHhhhhcccHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcccccCCHHHHHHHHH
Confidence 466688888888888877764211 113456667777888888775 666676663
No 363
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=32.42 E-value=58 Score=29.48 Aligned_cols=44 Identities=23% Similarity=0.196 Sum_probs=29.7
Q ss_pred ccCHHHHHhcccCCCCCcEEEECC--ChhhHHHHHHHHHHcCCcEE-EecCCC
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFT--DASTVYDNVKQATAFGMRSV-VYVPHI 59 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS--~p~~~~~~~~~~~~~g~p~V-iGTTG~ 59 (219)
.+++...|+ .-|+|||=- +..-.....+.+.+.|+.++ +||+|.
T Consensus 77 i~~la~~L~------~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG 123 (300)
T COG1023 77 IDDLAPLLS------AGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGG 123 (300)
T ss_pred HHHHHhhcC------CCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCC
Confidence 334555554 569999964 44555556666888999988 577763
No 364
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=32.13 E-value=97 Score=28.52 Aligned_cols=48 Identities=6% Similarity=0.069 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
+--++.++..+....|.||=|-|+... +.|.++|+++++|++.|+=.|
T Consensus 68 ~~r~~~i~~~~~~~~P~iI~sk~~~~p--~~l~~~a~~~~~pil~s~~~t 115 (308)
T COG1493 68 EERKKRIGKLFSLDTPALIVSKGLPIP--EELLDAAKKYNIPILTSKLST 115 (308)
T ss_pred hhHHHHHHHHhCcCCCEEEEECCCCCC--HHHHHHHHHcCCceEEecchH
Confidence 334667888899999999999999874 578999999999999976554
No 365
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=32.11 E-value=2.4e+02 Score=24.42 Aligned_cols=30 Identities=10% Similarity=-0.026 Sum_probs=14.2
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEE
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~Vi 54 (219)
.+|.+|=++......+.++.+.+.++|+|+
T Consensus 116 ~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~ 145 (327)
T TIGR02417 116 QVDALIVASCMPPEDAYYQKLQNEGLPVVA 145 (327)
T ss_pred CCCEEEEeCCCCCChHHHHHHHhcCCCEEE
Confidence 466544333211123445555566677664
No 366
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=32.10 E-value=1.4e+02 Score=25.03 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=43.1
Q ss_pred EEEECC--ChhhHHHHHHHHHHcCCcEEEecCCCCh-----hhHHHHHHHhhccCceEEEccChh
Q 027747 28 VVIDFT--DASTVYDNVKQATAFGMRSVVYVPHIQL-----ETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 28 VvIDFS--~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
|+++-. .++.+....+.|.+.|.-+|==.|||.. ++.+.|.+.++ .++||..|.-.-
T Consensus 121 vI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~-~~v~ik~aGGik 184 (203)
T cd00959 121 VILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG-GRVGVKAAGGIR 184 (203)
T ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-CCceEEEeCCCC
Confidence 344443 3677888899999999999987799972 56677888875 679999996443
No 367
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=32.09 E-value=58 Score=27.64 Aligned_cols=41 Identities=12% Similarity=0.167 Sum_probs=34.3
Q ss_pred HHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC
Q 027747 13 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 58 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG 58 (219)
++.+|+. ..|+++|-+.-+...+.++.+.+++.++|+-++.
T Consensus 85 ~~~aL~~-----g~~~ind~~~~~~~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 85 AEAALKA-----GADIINDISGFEDDPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp HHHHHHH-----TSSEEEETTTTSSSTTHHHHHHHHTSEEEEESES
T ss_pred HHHHHHc-----CcceEEecccccccchhhhhhhcCCCEEEEEecc
Confidence 4556653 6899999998666888999999999999999887
No 368
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=31.99 E-value=3.6e+02 Score=24.53 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=54.7
Q ss_pred CCChhhHHHHHHHHHHcCCcEEE----ecC-CCChhh-----HHHHHHHhhccCceEEEccChh-----------HHHHH
Q 027747 32 FTDASTVYDNVKQATAFGMRSVV----YVP-HIQLET-----VSALSAFCDKASMGCLIAPTLS-----------IGSIL 90 (219)
Q Consensus 32 FS~p~~~~~~~~~~~~~g~p~Vi----GTT-G~~~~~-----~~~l~~~a~~~~~~vv~spNfS-----------lGv~l 90 (219)
|-+|+.....+++....|-+=|+ |++ |++.-- +..++++. .+.||++=|-=| -|--=
T Consensus 140 f~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~--t~lPVi~DpSHsvq~p~~~g~~s~G~re 217 (281)
T PRK12457 140 FMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTT--GDLPVIFDVTHSLQCRDPLGAASGGRRR 217 (281)
T ss_pred cCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhC--CCCCEEEeCCccccCCCCCCCCCCCCHH
Confidence 56678888888888888766555 455 554421 12233222 478999999887 44433
Q ss_pred H-HHHHHHHhhhcCCeEEEecCCC----CCCCCcHHHHHH
Q 027747 91 L-QQAAISASFHYKNVEIVESRPN----ARDFPSPDATQI 125 (219)
Q Consensus 91 l-~~~~~~aa~~~~dieIiE~Hh~----K~DaPSGTA~~l 125 (219)
+ ..+++.+...-.|-=++|.|++ .-|.| +++.+
T Consensus 218 ~v~~larAAvA~GaDGl~iEvHpdP~~AlsDg~--q~l~~ 255 (281)
T PRK12457 218 QVLDLARAGMAVGLAGLFLEAHPDPDRARCDGP--SALPL 255 (281)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCCccccCCCcc--cccCH
Confidence 3 2233333333378889999974 57877 44433
No 369
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=31.93 E-value=1.6e+02 Score=19.73 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=24.5
Q ss_pred HHHHHHHHHHcCCcEEEecCCCC-hhhHHHHHHHhhccCceEEE
Q 027747 38 VYDNVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~~-~~~~~~l~~~a~~~~~~vv~ 80 (219)
..+.++.|.++|...| |.|-.+ -.....+.+++++.+++++.
T Consensus 17 ~~~~~~~a~~~g~~~v-~iTDh~~~~~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 17 PEELVKRAKELGLKAI-AITDHGNLFGAVEFYKAAKKAGIKPII 59 (67)
T ss_pred HHHHHHHHHHcCCCEE-EEeeCCcccCHHHHHHHHHHcCCeEEE
Confidence 5677788888888877 344333 22233455555556666654
No 370
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=31.90 E-value=3.5e+02 Score=23.64 Aligned_cols=89 Identities=10% Similarity=-0.006 Sum_probs=57.5
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCC--CChhhHHHHHHH-hhccCceEEEc-cChhHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPH--IQLETVSALSAF-CDKASMGCLIA-PTLSIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG--~~~~~~~~l~~~-a~~~~~~vv~s-pNfSlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
-|.-.+.+.+. ..|+.-+++|.| ++++|...|+.. + . -|+++ =|=.=|.....++.+.+.+.-++++|+..
T Consensus 116 vEGymDVIsl~-qaGi~naVAslGTALT~~q~~lLkr~~~--~--~Iil~~D~D~AG~~Aa~r~~~~L~~~G~~v~vv~l 190 (218)
T TIGR00646 116 VEGDFDWLAFR-KAGILNCLPLCGLTISDKQMKFFKQKKI--E--KIFICFDNDFAGKNAAANLEEILKKAGFITKVIEI 190 (218)
T ss_pred EecHHHHHHHH-HCCCCeEEEcCchHhHHHHHHHHhccCC--C--EEEEEeCCCHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 35667777544 478877777777 588887777653 2 2 23443 34455888888877777655578888877
Q ss_pred CCCCCC-------CCcHHHHHHHHH
Q 027747 111 RPNARD-------FPSPDATQIANN 128 (219)
Q Consensus 111 Hh~K~D-------aPSGTA~~la~~ 128 (219)
.+..+| .||+++..|-+.
T Consensus 191 P~~~KDwNEllk~~~~~w~~~l~~~ 215 (218)
T TIGR00646 191 KAAAKDWNDLFLLNNKNWAAALRDH 215 (218)
T ss_pred CCcCCChhHHHHHhhhhHHHHHHhh
Confidence 665555 567765555443
No 371
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=31.90 E-value=90 Score=29.62 Aligned_cols=88 Identities=20% Similarity=0.172 Sum_probs=50.8
Q ss_pred CCh-hhHHHHHHHHHH-cCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 33 TDA-STVYDNVKQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 33 S~p-~~~~~~~~~~~~-~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
+.| +...+.++..++ .++|+|++++ +.+-++..-+.+. .+.|++++.|-. -...+++.|-+ |+.-++=.
T Consensus 80 ~DPae~fa~~vk~V~~a~~~PLIL~~~--D~evl~aale~~~-~~kpLL~aAt~e----Nyk~m~~lA~~--y~~pl~v~ 150 (386)
T PF03599_consen 80 GDPAEEFAKAVKKVAEAVDVPLILCGC--DPEVLKAALEACA-GKKPLLYAATEE----NYKAMAALAKE--YGHPLIVS 150 (386)
T ss_dssp GSTHHHHHHHHHHHHHC-SSEEEEESS--HHHHHHHHHHHTT-TS--EEEEEBTT----THHHHHHHHHH--CT-EEEEE
T ss_pred CChHHHHHHHHHHHHHhcCCCEEEEeC--CHHHHHHHHHHhC-cCCcEEeEcCHH----HHHHHHHHHHH--cCCeEEEE
Confidence 344 777788877775 8999999988 6655555444443 467999999987 34566665533 34443322
Q ss_pred CCCCCCCCcHHHHHHHHHHHhcC
Q 027747 111 RPNARDFPSPDATQIANNLSNLG 133 (219)
Q Consensus 111 Hh~K~DaPSGTA~~la~~i~~~~ 133 (219)
-+. |. -.++.|...+.+.|
T Consensus 151 sp~--Dl--n~lk~Ln~~l~~~G 169 (386)
T PF03599_consen 151 SPI--DL--NLLKQLNIKLTELG 169 (386)
T ss_dssp -SS--CH--HHHHHHHHHHHTTT
T ss_pred ecc--cH--HHHHHHHHHHHhcC
Confidence 111 11 14566666666544
No 372
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=31.73 E-value=7.6 Score=30.07 Aligned_cols=12 Identities=25% Similarity=0.415 Sum_probs=10.5
Q ss_pred CCCCCcHHHHHH
Q 027747 114 ARDFPSPDATQI 125 (219)
Q Consensus 114 K~DaPSGTA~~l 125 (219)
.+|.|||||.+.
T Consensus 60 RLdIpagTAVRF 71 (106)
T COG0832 60 RLDIPAGTAVRF 71 (106)
T ss_pred EecccCCceEee
Confidence 699999999873
No 373
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.64 E-value=2e+02 Score=27.44 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=21.5
Q ss_pred EEecCCCCh--hhHHHHHHHhhccCceEEEccChhHHHHHHH
Q 027747 53 VVYVPHIQL--ETVSALSAFCDKASMGCLIAPTLSIGSILLQ 92 (219)
Q Consensus 53 ViGTTG~~~--~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~ 92 (219)
|||-||=+= --...|..+-++.+.+.....| +|..++.
T Consensus 119 vIgITGTnGKTTTt~li~~iL~~~g~~~~~~Gn--iG~p~~~ 158 (488)
T PRK03369 119 WLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGN--IGSPVLD 158 (488)
T ss_pred EEEEECCCcHHHHHHHHHHHHHHcCCceEEeCC--CchHHHH
Confidence 355555322 1234455555556667777888 6776644
No 374
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=31.60 E-value=2.6e+02 Score=23.77 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=45.0
Q ss_pred EEECCChhhHHHHHHHHHHc------CCcEEEecC-----CCChhhHHHH----HHHhhccCceEEEcc-ChhHHHHHHH
Q 027747 29 VIDFTDASTVYDNVKQATAF------GMRSVVYVP-----HIQLETVSAL----SAFCDKASMGCLIAP-TLSIGSILLQ 92 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~------g~p~ViGTT-----G~~~~~~~~l----~~~a~~~~~~vv~sp-NfSlGv~ll~ 92 (219)
.-|.|.++.+.+..+++.+. -+|+.+||- -+.++....| +.+|+--+.+.++|+ -.|+-|+-..
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF 178 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF 178 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence 45889999999888888763 579999985 2334433344 344544566766654 4555555444
Q ss_pred HHHHHHhhhc
Q 027747 93 QAAISASFHY 102 (219)
Q Consensus 93 ~~~~~aa~~~ 102 (219)
++ .+|+.|
T Consensus 179 K~--vlAklF 186 (205)
T KOG1673|consen 179 KI--VLAKLF 186 (205)
T ss_pred HH--HHHHHh
Confidence 43 355655
No 375
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=31.60 E-value=1e+02 Score=30.02 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=36.8
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecCC-CChhhHHHHHHHhhccCceEEEccC
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVPH-IQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTTG-~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
.++.+...++...+.+.|+++-=-| ...+..+.|.+++++.++|++-+++
T Consensus 206 ~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 256 (569)
T PRK08327 206 DPEDIARAAEMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAG 256 (569)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCC
Confidence 4566777778878888888854444 3334567899999999999997654
No 376
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=31.59 E-value=1.1e+02 Score=25.34 Aligned_cols=44 Identities=9% Similarity=0.068 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
|+...+.++..++.++..|+|..+-. ....+.+.+.+.++|++.
T Consensus 52 ~~~~~~~~~~l~~~~v~~iig~~~~~--~~~~~~~~~~~~~ip~i~ 95 (298)
T cd06268 52 PEAAAAAARELVDDGVDAVIGPLSSG--VALAAAPVAEEAGVPLIS 95 (298)
T ss_pred HHHHHHHHHHHHhCCceEEEcCCcch--hHHhhHHHHHhCCCcEEc
Confidence 55555666666666666666644322 222334444456666654
No 377
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=31.56 E-value=1.1e+02 Score=30.66 Aligned_cols=79 Identities=14% Similarity=0.112 Sum_probs=54.4
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChh--h----HHHHHHHhhccCce
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLE--T----VSALSAFCDKASMG 77 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~--~----~~~l~~~a~~~~~~ 77 (219)
+|++.+++..++-+ .+|+.|=.+.+..+.+.++.|-+.|+..+|--| ||.+- + .+.+.++|++.++.
T Consensus 52 ~G~~ay~s~~~lp~------~~dlav~~v~~~~~~~i~~~~~~kGv~~~i~is~gf~e~~~~~~~~e~~~~~~a~~~~~r 125 (598)
T COG1042 52 LGVKAYTSVADLPD------APDLAVIVVPAKVVPEIVHELGEKGVKGAIVISAGFREAGEEGMELEKELVEAARKYGMR 125 (598)
T ss_pred ccccccchHhhCCC------CCCeeEEEechhhhHHHHHHhhccCCceEEEechhhhHHhhhHhHHHHHHHHHHHhcCce
Confidence 35677777777754 689999899999999999999999998777655 66541 1 23344456555554
Q ss_pred EEEccChhHHHHH
Q 027747 78 CLIAPTLSIGSIL 90 (219)
Q Consensus 78 vv~spNfSlGv~l 90 (219)
++-||--=+.+.
T Consensus 126 -ligPn~~G~~~~ 137 (598)
T COG1042 126 -IIGPNCLGLINP 137 (598)
T ss_pred -Eecccccccccc
Confidence 555875444443
No 378
>PRK13203 ureB urease subunit beta; Reviewed
Probab=31.43 E-value=8.5 Score=29.78 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=10.5
Q ss_pred CCCCCCcHHHHH
Q 027747 113 NARDFPSPDATQ 124 (219)
Q Consensus 113 ~K~DaPSGTA~~ 124 (219)
.++|.|||||++
T Consensus 59 ~RLdIpaGTavR 70 (102)
T PRK13203 59 MRLNIPAGTAVR 70 (102)
T ss_pred cccccCCCCeEe
Confidence 379999999987
No 379
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=31.39 E-value=53 Score=27.25 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=22.2
Q ss_pred HHHHHHHHHHcCCcEEEecCCCChhh
Q 027747 38 VYDNVKQATAFGMRSVVYVPHIQLET 63 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~~~~~ 63 (219)
..-|..|-.++|-|+||+.+|-+.++
T Consensus 102 ~~lN~~Y~~kFGfpFii~v~g~s~~~ 127 (166)
T PRK13798 102 AAGNRAYEEKFGFVFLICATGRSADE 127 (166)
T ss_pred HHHHHHHHHhCCCeEEEeeCCCCHHH
Confidence 35577888899999999999998866
No 380
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=31.34 E-value=2.1e+02 Score=21.89 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=31.4
Q ss_pred EEEECCChhhH-HHHHHHHHHcCCcEEE-ecCCCC-hhhHHHHHHHhhccC
Q 027747 28 VVIDFTDASTV-YDNVKQATAFGMRSVV-YVPHIQ-LETVSALSAFCDKAS 75 (219)
Q Consensus 28 VvIDFS~p~~~-~~~~~~~~~~g~p~Vi-GTTG~~-~~~~~~l~~~a~~~~ 75 (219)
+.|=||-|+.. .+.++.+.+.|.++|+ |-.+-+ .+....+.++.++.+
T Consensus 2 iFvS~SMP~~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~ 52 (113)
T PF09673_consen 2 IFVSFSMPDASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDD 52 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccC
Confidence 46778988765 5667999999999998 333222 233455666665443
No 381
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.30 E-value=1.5e+02 Score=25.83 Aligned_cols=41 Identities=12% Similarity=0.300 Sum_probs=26.2
Q ss_pred HHHcCCcEEEec----CCCChhhHHHHHHHhhccCceEEEc-cChhH
Q 027747 45 ATAFGMRSVVYV----PHIQLETVSALSAFCDKASMGCLIA-PTLSI 86 (219)
Q Consensus 45 ~~~~g~p~ViGT----TG~~~~~~~~l~~~a~~~~~~vv~s-pNfSl 86 (219)
+.++|+..+ +. ...+..++.++.+.+++.++++|+. ++++-
T Consensus 184 ~~~ygl~~~-~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~ 229 (266)
T cd01018 184 ARDYGLTQI-PIEEEGKEPSPADLKRLIDLAKEKGVRVVFVQPQFST 229 (266)
T ss_pred HHHcCCEEE-ecCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCc
Confidence 335677654 32 2356677788888888888887775 44443
No 382
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=31.30 E-value=1.7e+02 Score=25.57 Aligned_cols=85 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred CCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC--------------------CCCh-----hhHHHHHHHh-hccCc
Q 027747 23 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP--------------------HIQL-----ETVSALSAFC-DKASM 76 (219)
Q Consensus 23 ~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT--------------------G~~~-----~~~~~l~~~a-~~~~~ 76 (219)
..++|+||=+..+. +....+..... +|+|.+.. |.++ ++++.++++. .-+++
T Consensus 57 ~~~~DlIi~~gt~a-a~~~~~~~~~~-iPVVf~~V~dp~~~~l~~~~~~~~~nvTGv~~~~~~~~~l~l~~~l~P~~k~i 134 (294)
T PF04392_consen 57 AQKPDLIIAIGTPA-AQALAKHLKDD-IPVVFCGVSDPVGAGLVDSLDRPGKNVTGVSERPPIEKQLELIKKLFPDAKRI 134 (294)
T ss_dssp CTS-SEEEEESHHH-HHHHHHH-SS--S-EEEECES-TTTTTS-S-SSS--SSEEEEEE---HHHHHHHHHHHSTT--EE
T ss_pred cCCCCEEEEeCcHH-HHHHHHhcCCC-cEEEEEeccChhhhhccccccCCCCCEEEEECCcCHHHHHHHHHHhCCCCCEE
Q ss_pred eEEEccChhHHHHHHHHHHHHHhhhcCCeEEEe
Q 027747 77 GCLIAPTLSIGSILLQQAAISASFHYKNVEIVE 109 (219)
Q Consensus 77 ~vv~spNfSlGv~ll~~~~~~aa~~~~dieIiE 109 (219)
.+++.|+.+-+......+.+.+.++-.++...+
T Consensus 135 gvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~ 167 (294)
T PF04392_consen 135 GVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIP 167 (294)
T ss_dssp EEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred EEEecCCCccHHHHHHHHHHHHHHcCCEEEEEe
No 383
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=31.09 E-value=84 Score=30.21 Aligned_cols=49 Identities=10% Similarity=0.091 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCC-hhhHHHHHHHhhccCceEEEccC
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~-~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++.+...++...+.+.|+|+.--|.. .+..+.|++++++.++||+-.+.
T Consensus 193 ~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~ 242 (530)
T PRK07092 193 PAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPM 242 (530)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecC
Confidence 45667777777777889988766653 33457899999999999996553
No 384
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=31.06 E-value=66 Score=25.27 Aligned_cols=24 Identities=8% Similarity=0.095 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHcCCcEEEecCCCC
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHIQ 60 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~~ 60 (219)
.+.+.++.+.++|.+++|.|.|+.
T Consensus 77 g~~~~l~~l~~~g~~~~ivS~~~~ 100 (177)
T TIGR01488 77 GARELISWLKERGIDTVIVSGGFD 100 (177)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcH
Confidence 345566666666666666666654
No 385
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=31.05 E-value=74 Score=28.16 Aligned_cols=60 Identities=17% Similarity=0.220 Sum_probs=41.9
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
.++.+.+. .+|++|=-|..+...-.+-.|+..|+|+|..-+|...+ .+ +....+.++.++
T Consensus 264 ~~~~~~~~------~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g~~e---~i----~~~~~g~~~~~~ 323 (374)
T TIGR03088 264 DDVPALMQ------ALDLFVLPSLAEGISNTILEAMASGLPVIATAVGGNPE---LV----QHGVTGALVPPG 323 (374)
T ss_pred CCHHHHHH------hcCEEEeccccccCchHHHHHHHcCCCEEEcCCCCcHH---Hh----cCCCceEEeCCC
Confidence 46667775 58999877888888888889999999999865655442 22 223346666553
No 386
>PF11813 DUF3334: Protein of unknown function (DUF3334); InterPro: IPR024513 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 227 to 238 amino acids in length.
Probab=31.05 E-value=57 Score=28.55 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=21.4
Q ss_pred EEEECCChhhHHHHHHHHHHcCCc
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMR 51 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p 51 (219)
|||.||.+.+.+=.-.|.+..|.|
T Consensus 64 VviNFsa~AAmEiY~~YMl~MGMp 87 (229)
T PF11813_consen 64 VVINFSAQAAMEIYRSYMLNMGMP 87 (229)
T ss_pred EEEecChHHHHHHHHHHHHhcCCC
Confidence 899999999988888888888876
No 387
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=30.97 E-value=8.7 Score=29.68 Aligned_cols=12 Identities=33% Similarity=0.357 Sum_probs=10.5
Q ss_pred CCCCCCcHHHHH
Q 027747 113 NARDFPSPDATQ 124 (219)
Q Consensus 113 ~K~DaPSGTA~~ 124 (219)
..+|.|||||++
T Consensus 59 ~RLdIpaGTavR 70 (101)
T TIGR00192 59 MRLDIPSGTAVR 70 (101)
T ss_pred cccccCCCCeEe
Confidence 379999999987
No 388
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=30.88 E-value=71 Score=27.90 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=36.4
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
||+-|=|-.+-+......|.++|..+++|+-|=..=-+++|+.++. +.+|+
T Consensus 150 Dlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~~l~~~a~-yqvp~ 200 (218)
T COG3897 150 DLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAYLPKKRLEFLAI-YQVPM 200 (218)
T ss_pred ceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCCCchhhhhhhhh-ccCcc
Confidence 4555666667788899999999999999999954433456666654 34443
No 389
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=30.77 E-value=81 Score=27.54 Aligned_cols=48 Identities=15% Similarity=0.174 Sum_probs=35.2
Q ss_pred CChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 33 TDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 33 S~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
.+-+-+....+.|.++|.++ ==|-|.+.+.++.|-+.|.+.+++-++.
T Consensus 161 ~~leE~~avAkA~a~~g~~l-EPTGGIdl~N~~~I~~i~l~aGv~~viP 208 (218)
T PF07071_consen 161 KHLEELKAVAKACARNGFTL-EPTGGIDLDNFEEIVKICLDAGVEKVIP 208 (218)
T ss_dssp TTHHHHHHHHHHHHHCT-EE-EEBSS--TTTHHHHHHHHHHTT-S-B--
T ss_pred ccHHHHHHHHHHHHHcCcee-CCcCCcCHHHHHHHHHHHHHcCCCeecc
Confidence 45577788899999999999 8888999999999988888888776653
No 390
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=30.73 E-value=57 Score=26.79 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHcCCcEEEecCCCChhh
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHIQLET 63 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~~~~~ 63 (219)
...-|-.|-.++|-|+||+.+|-+.++
T Consensus 96 L~~lN~~Y~~kFGfpFvi~v~g~~~~~ 122 (157)
T TIGR03164 96 FTRLNNAYRARFGFPFIMAVKGKTKQS 122 (157)
T ss_pred HHHHHHHHHHHCCCeeEEeeCCCCHHH
Confidence 345577888899999999999998865
No 391
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=30.67 E-value=2.4e+02 Score=24.54 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=10.0
Q ss_pred ChhhHHHHHHHHHHcCCcEE
Q 027747 34 DASTVYDNVKQATAFGMRSV 53 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~V 53 (219)
.++...+.++.+.+.|...|
T Consensus 109 ~~~~~~~~a~~~~~~G~d~i 128 (289)
T cd02810 109 SKEDYVELARKIERAGAKAL 128 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEE
Confidence 44555555555555544433
No 392
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=30.60 E-value=1.5e+02 Score=26.78 Aligned_cols=80 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred EEECCChhhHHHH--HHHHHHcCCcEEE----------ecCCCCh------hhHHHHHHHhhccCceEEEccChhHHHHH
Q 027747 29 VIDFTDASTVYDN--VKQATAFGMRSVV----------YVPHIQL------ETVSALSAFCDKASMGCLIAPTLSIGSIL 90 (219)
Q Consensus 29 vIDFS~p~~~~~~--~~~~~~~g~p~Vi----------GTTG~~~------~~~~~l~~~a~~~~~~vv~spNfSlGv~l 90 (219)
+||-|-|-+..-. ++.+.+.|-.+|+ |+.||.+ +..++++.+- ..-++.+.+...+..--
T Consensus 94 viDaTCP~V~k~~~~v~~~~~~Gy~iviiG~~~HpEv~gi~g~~~~~~~vv~~~~d~~~l~--~~~kv~~vsQTT~~~~~ 171 (281)
T PRK12360 94 IIDATCPFVKKIQNIVEEYYNKGYSIIIVGDKNHPEVIGINGWCDNSAYIVNSIEEVENIP--FLDKACVVAQTTIIPEL 171 (281)
T ss_pred EEeCCCccchHHHHHHHHHHhCCCEEEEEcCCCCceeeEeccCcCCCeEEECCHHHHhhCc--cccCEEEEECCCCcHHH
Q ss_pred HHHHHHHHhhhcCCeEEEec
Q 027747 91 LQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 91 l~~~~~~aa~~~~dieIiE~ 110 (219)
+..+++.+.+.|+++++...
T Consensus 172 ~~~iv~~l~~~~~~~~v~~T 191 (281)
T PRK12360 172 WEDILNVIKLKSKELVFFNT 191 (281)
T ss_pred HHHHHHHHHHhCcccccCCC
No 393
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=30.57 E-value=92 Score=27.87 Aligned_cols=31 Identities=26% Similarity=0.154 Sum_probs=13.0
Q ss_pred CcEEEECCC-hhhHHHHHHHHHHcCCcEEEec
Q 027747 26 RAVVIDFTD-ASTVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 26 ~DVvIDFS~-p~~~~~~~~~~~~~g~p~ViGT 56 (219)
+|++||++- ++.+...++.+...|.=+++|.
T Consensus 246 ~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 246 ADVVIDAVGRPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCEEEECCCCHHHHHHHHHHhccCCEEEEECC
Confidence 445555443 3333444433333444333443
No 394
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=30.55 E-value=1.3e+02 Score=25.32 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=27.2
Q ss_pred CCcEEEECCC-hhhHHHHHHHHHHcCCcEEEecC-CCC
Q 027747 25 ARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP-HIQ 60 (219)
Q Consensus 25 ~~DVvIDFS~-p~~~~~~~~~~~~~g~p~ViGTT-G~~ 60 (219)
.+|+|||-+. ++.-...-++|.++++|+|.+.+ ||.
T Consensus 111 ~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~ 148 (202)
T TIGR02356 111 NVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFG 148 (202)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCe
Confidence 6999999874 45545566889999999998654 553
No 395
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=30.35 E-value=3.1e+02 Score=22.49 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=18.4
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=++ ..+...+.++.+.+.++|+|.-
T Consensus 55 ~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 55 GVDAIIINPTDSDAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred CCCEEEEcCCChHHHHHHHHHHHHCCCcEEEE
Confidence 578544332 2233455667777788888754
No 396
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=30.33 E-value=1.2e+02 Score=26.47 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=52.9
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc-C
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY-K 103 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~-~ 103 (219)
.|++-|+.-.-....++.......+..+|+.++.-.. ....|.++|.+.++|++.+ ++ ++..+ |
T Consensus 78 nP~~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~-~k~~L~~~c~~~~ip~I~s--~g------------~g~~~dp 142 (231)
T cd00755 78 NPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIR-AKVALIAYCRKRKIPVISS--MG------------AGGKLDP 142 (231)
T ss_pred CCCcEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHH-HHHHHHHHHHHhCCCEEEE--eC------------CcCCCCC
Confidence 4565554333333334555555556889999987443 4456888999999999987 22 23333 2
Q ss_pred -CeEEEecCCCCCCCCcHHHHHHHHHHHhc
Q 027747 104 -NVEIVESRPNARDFPSPDATQIANNLSNL 132 (219)
Q Consensus 104 -dieIiE~Hh~K~DaPSGTA~~la~~i~~~ 132 (219)
.++|-+.-..+.|- =|+.+-+.+.+.
T Consensus 143 ~~i~i~di~~t~~~p---la~~~R~~Lrk~ 169 (231)
T cd00755 143 TRIRVADISKTSGDP---LARKVRKRLRKR 169 (231)
T ss_pred CeEEEccEeccccCc---HHHHHHHHHHHc
Confidence 45655554334442 366666666653
No 397
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=30.27 E-value=2.7e+02 Score=24.18 Aligned_cols=30 Identities=20% Similarity=0.047 Sum_probs=15.7
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEE
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~Vi 54 (219)
.+|.+|=+.........++.+.+.++|+|.
T Consensus 120 ~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~ 149 (342)
T PRK10014 120 GVDGVVIAGAAGSSDDLREMAEEKGIPVVF 149 (342)
T ss_pred CCCEEEEeCCCCCcHHHHHHHhhcCCCEEE
Confidence 466544333222234555666666777765
No 398
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway. This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Probab=30.23 E-value=1.2e+02 Score=26.63 Aligned_cols=34 Identities=9% Similarity=-0.060 Sum_probs=22.1
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH 58 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG 58 (219)
+.++||-......+....+.+.+.|+|+|..+++
T Consensus 65 ~v~~viG~~~s~~~~a~~~~~~~~~ip~i~~~~~ 98 (333)
T cd06359 65 KVDFVTGVVFSNVLLAVVPPVLESGTFYISTNAG 98 (333)
T ss_pred CCcEEEccCCcHHHHHHHHHHHHcCCeEEecCCC
Confidence 5666776555566666667777777777765443
No 399
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=30.04 E-value=2.6e+02 Score=25.48 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=37.9
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCcEEE-ecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMRSVV-YVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p~Vi-GTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
..+|++|-+.......+.++.+-+.++.+|. .++|++.-+ +. ++.+.++.+.-+|+.+
T Consensus 44 ~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id---~~-~~~~~gI~v~n~~~~~ 102 (330)
T PRK12480 44 KDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYD---LD-LAKKHNIVISNVPSYS 102 (330)
T ss_pred CCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhh---HH-HHHHCCCEEEeCCCCC
Confidence 3689887765545667777776555666664 455776522 33 3455899999988854
No 400
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=29.94 E-value=2.5e+02 Score=23.35 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=15.7
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEE
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~Vi 54 (219)
.+|.+|=++.... ...++.+.+.|+|+|.
T Consensus 64 ~~dgiii~~~~~~-~~~~~~~~~~~ipvV~ 92 (275)
T cd06295 64 RADGVILIGQHDQ-DPLPERLAETGLPFVV 92 (275)
T ss_pred CCCEEEEeCCCCC-hHHHHHHHhCCCCEEE
Confidence 5775554432211 2345666677777775
No 401
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=29.91 E-value=1.9e+02 Score=25.57 Aligned_cols=73 Identities=8% Similarity=-0.061 Sum_probs=44.3
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChh-hHHHHHH------HHHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDAS-TVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~-~~~~~~~------~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
++....+..+++. .+|+||=...++ .+.+.+. .++..|.-+|..+|+. +....++.+...++++..
T Consensus 44 g~~~~~s~~~~~~------~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~-p~~~~~l~~~l~~~g~~~ 116 (296)
T PRK15461 44 GATPAASPAQAAA------GAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIH-PLQTDKLIADMQAKGFSM 116 (296)
T ss_pred CCcccCCHHHHHh------cCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCcE
Confidence 3445567777765 689877555444 3444432 1234455667777765 556677777766778777
Q ss_pred EEccChh
Q 027747 79 LIAPTLS 85 (219)
Q Consensus 79 v~spNfS 85 (219)
+=+|-+.
T Consensus 117 ldapV~g 123 (296)
T PRK15461 117 MDVPVGR 123 (296)
T ss_pred EEccCCC
Confidence 7666654
No 402
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=29.88 E-value=2.3e+02 Score=23.29 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=17.0
Q ss_pred CCc-EEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARA-VVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
++| ++|....++. ..++.+.+.|+|+|.=
T Consensus 55 ~~dgiii~~~~~~~--~~l~~~~~~~ipvV~~ 84 (267)
T cd06283 55 QVDGLIVNPTGNNK--ELYQRLAKNGKPVVLV 84 (267)
T ss_pred CcCEEEEeCCCCCh--HHHHHHhcCCCCEEEE
Confidence 577 4444333322 3467777888888764
No 403
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=29.73 E-value=3.3e+02 Score=22.68 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=19.0
Q ss_pred CCcEEE-ECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVI-DFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvI-DFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+| --+.+....+.++.+.+ ++|+|.-
T Consensus 55 ~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~ 85 (271)
T cd06314 55 GVDGIAISPIDPKAVIPALNKAAA-GIKLITT 85 (271)
T ss_pred CCCEEEEecCChhHhHHHHHHHhc-CCCEEEe
Confidence 678544 33444555667777767 8888874
No 404
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=29.73 E-value=99 Score=33.46 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=38.2
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCC-hhhHHHHHHHhhccCceEEEccC
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~-~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+.||-++|+++...++.|. |+++|=-.+|.. ++.++.+-.++++++.++|.-..
T Consensus 418 lsIDS~~~~v~eaaLk~~~--G~~IINsIs~~~g~~~~~~~~~l~~~yga~vV~m~~ 472 (1178)
T TIGR02082 418 LMLDSSEWAVLEAGLKCIQ--GKCIVNSISLKDGEERFIETAKLIKEYGAAVVVMAF 472 (1178)
T ss_pred EEEeCCcHHHHHHHHHhcC--CCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 6888888888777666543 788887777764 34555666677777777777653
No 405
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=29.72 E-value=2.2e+02 Score=23.49 Aligned_cols=64 Identities=11% Similarity=0.005 Sum_probs=43.6
Q ss_pred EEECCChhhHHHHHHHHHHcC---CcEEEecCCCChhhHHHHHHHhhccCceEEEccC----hhHHHHHHH
Q 027747 29 VIDFTDASTVYDNVKQATAFG---MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT----LSIGSILLQ 92 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g---~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN----fSlGv~ll~ 92 (219)
.||....+.+...++.+.+.+ +-+.|.|.|.+..+-..|.........|++-+-| ++.|.-.+.
T Consensus 9 ~I~~~~~~~l~~~l~~a~~~~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~i 79 (187)
T cd07020 9 AITPATADYLERAIDQAEEGGADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYI 79 (187)
T ss_pred EEChHHHHHHHHHHHHHHhCCCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHH
Confidence 466666778888888888765 3346789999876655655444456789987665 666655443
No 406
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=29.71 E-value=1.9e+02 Score=22.66 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCcEEEecCCCChhh-HHHHHHHhhccCceEEEccChh
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQLET-VSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~~~~-~~~l~~~a~~~~~~vv~spNfS 85 (219)
.+.++.-.+-...+|+=+.--++.+ ...|..+|+++++|+++.+|..
T Consensus 33 ~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~ 80 (116)
T COG1358 33 NEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKK 80 (116)
T ss_pred HHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHH
Confidence 3444444444456666666666433 4556677777777777777653
No 407
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=29.40 E-value=2.2e+02 Score=26.35 Aligned_cols=68 Identities=6% Similarity=0.146 Sum_probs=45.3
Q ss_pred CHHHHHhcccCCCCCcE-EEECCChhhHHHHHHHHHHcCCcEEEecC-------CCCh-hh-HHHHHHHhhcc--CceEE
Q 027747 12 DLTMVLGSISQSKARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVP-------HIQL-ET-VSALSAFCDKA--SMGCL 79 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTT-------G~~~-~~-~~~l~~~a~~~--~~~vv 79 (219)
++.++|... ....+-| ..++.+.+.+...++.|.+.+.|+++.++ |.+. .. ...+.+++++. ++||+
T Consensus 11 ~~k~lL~~A-~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~a~~a~~~VPV~ 89 (321)
T PRK07084 11 NTREMFAKA-VKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEYAKELGCPIPIV 89 (321)
T ss_pred CHHHHHHHH-HHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHHHHHcCCCCcEE
Confidence 455666532 2234443 78899999999999999999999999986 3211 11 12234556555 68888
Q ss_pred E
Q 027747 80 I 80 (219)
Q Consensus 80 ~ 80 (219)
+
T Consensus 90 l 90 (321)
T PRK07084 90 L 90 (321)
T ss_pred E
Confidence 7
No 408
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=29.40 E-value=1.9e+02 Score=20.62 Aligned_cols=57 Identities=11% Similarity=0.002 Sum_probs=38.4
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcE-EEecCCCChhhH----HHHHHHhhccCceEEEcc
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRS-VVYVPHIQLETV----SALSAFCDKASMGCLIAP 82 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~-ViGTTG~~~~~~----~~l~~~a~~~~~~vv~sp 82 (219)
....+-....+.....++++.+.+..+ |+|+.+.+.-.. ...+.+.++...||++.|
T Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 79 IVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred ceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 344555556677788889999998875 569988443221 344566667778988764
No 409
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=29.33 E-value=1.6e+02 Score=24.83 Aligned_cols=17 Identities=18% Similarity=0.411 Sum_probs=8.5
Q ss_pred HHHHHHHhhccCceEEE
Q 027747 64 VSALSAFCDKASMGCLI 80 (219)
Q Consensus 64 ~~~l~~~a~~~~~~vv~ 80 (219)
++.|.+++++.++.++.
T Consensus 64 ~~~l~~~a~~~~~~ii~ 80 (254)
T cd07576 64 LQALRAIARRHGIAIVV 80 (254)
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 34455555555554444
No 410
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=29.32 E-value=1.8e+02 Score=25.47 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=27.8
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCc--EEEecCCCChhhHH
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMR--SVVYVPHIQLETVS 65 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p--~ViGTTG~~~~~~~ 65 (219)
.+||+|+-...++.....++.+.+.|.. ++.+++++++....
T Consensus 186 ~~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 229 (333)
T cd06358 186 SGADAVLSTLVGQDAVAFNRQFAAAGLRDRILRLSPLMDENMLL 229 (333)
T ss_pred cCCCEEEEeCCCCchHHHHHHHHHcCCCccCceeecccCHHHHH
Confidence 3689887655555555788888888875 45555667765433
No 411
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=29.30 E-value=1.2e+02 Score=29.36 Aligned_cols=49 Identities=14% Similarity=0.020 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCC-ChhhHHHHHHHhhccCceEEEccC
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHI-QLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~-~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++.+...++...+.+.|+|+.=-|- ..+..+.|.+++++.++|++-+++
T Consensus 191 ~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~ 240 (557)
T PRK08199 191 AADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFR 240 (557)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCC
Confidence 4566777777777788998855553 344568899999999999997533
No 412
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=29.27 E-value=1.4e+02 Score=26.72 Aligned_cols=60 Identities=8% Similarity=0.075 Sum_probs=38.4
Q ss_pred CcEEEECCCh---hhHHHHHHHHHHcCCc---EEEec-CC--CChhhHHHHHHHhhccCceEEEccChhHH
Q 027747 26 RAVVIDFTDA---STVYDNVKQATAFGMR---SVVYV-PH--IQLETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 26 ~DVvIDFS~p---~~~~~~~~~~~~~g~p---~ViGT-TG--~~~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
+||.+-.+.| -.+.+.++.+..++.+ +|.|+ || ++.+.+..+++.+ ..+|+++++-.+..
T Consensus 144 adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~--~~~PvllggGvt~e 212 (257)
T TIGR00259 144 ADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETV--KDTPVLAGSGVNLE 212 (257)
T ss_pred eceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhcc--CCCeEEEECCCCHH
Confidence 5777777766 4567778888888744 33342 45 4455555555434 56899999977664
No 413
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=29.19 E-value=3.8e+02 Score=23.83 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=22.5
Q ss_pred HHHcCCcEEEecCCCChhhHHHHHHHhhccCc-eEEEccCh
Q 027747 45 ATAFGMRSVVYVPHIQLETVSALSAFCDKASM-GCLIAPTL 84 (219)
Q Consensus 45 ~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~-~vv~spNf 84 (219)
+.+.++|++.|+.+.+-++--++-+.+++.+. .+++.|-+
T Consensus 65 ~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~pP~ 105 (294)
T TIGR02313 65 QIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIVPY 105 (294)
T ss_pred HhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 34556888888887776543333344444554 34444443
No 414
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=29.16 E-value=1.2e+02 Score=26.63 Aligned_cols=33 Identities=9% Similarity=0.098 Sum_probs=20.2
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
++++||-...+.........+.+.++|+|..++
T Consensus 67 ~v~aiig~~~s~~~~~~~~~~~~~~ip~i~~~s 99 (346)
T cd06330 67 GVDMLIGLISSGVALAVAPVAEELKVFFIATDP 99 (346)
T ss_pred CCcEEEcccchHHHHHHHHHHHHcCCeEEEcCC
Confidence 466666554555556666666677777666444
No 415
>PRK13936 phosphoheptose isomerase; Provisional
Probab=29.15 E-value=3e+02 Score=22.88 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=36.3
Q ss_pred CCcEEEECCCh---hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHH
Q 027747 25 ARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 25 ~~DVvIDFS~p---~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
+-||+|=||.. ..+.+.++.|.++|.|+| +-||.....+..+-..+ ... +..|.-..+
T Consensus 111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI-~IT~~~~s~l~~l~~~a---d~~-l~v~~~~~~ 171 (197)
T PRK13936 111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVV-ALTGRDGGKMASLLLPE---DVE-IRVPAERTA 171 (197)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEE-EEECCCCChhhhhhccC---CEE-EEeCCCcHH
Confidence 56888888865 456788899999998876 56666554444432233 333 444444444
No 416
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=29.11 E-value=9.4 Score=29.51 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=10.1
Q ss_pred CCCCCcHHHHH
Q 027747 114 ARDFPSPDATQ 124 (219)
Q Consensus 114 K~DaPSGTA~~ 124 (219)
.+|.|||||++
T Consensus 60 RLdIpaGTavR 70 (101)
T cd00407 60 RLDIPAGTAVR 70 (101)
T ss_pred eecccCCCeEE
Confidence 79999999987
No 417
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=29.09 E-value=1.1e+02 Score=23.58 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCcEEEecCCC---C--hhhHHHHHHHhhccCceEEEccCh
Q 027747 39 YDNVKQATAFGMRSVVYVPHI---Q--LETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~---~--~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
...++...+..+.+||-|.-- . ..+-..|++.|.++++|++-+.+.
T Consensus 60 ~~i~~~i~~g~i~~VInt~~~~~~~~~~~dg~~iRr~a~~~~Ip~~Ttl~t 110 (115)
T cd01422 60 QQIGALIAEGEIDAVIFFRDPLTAQPHEPDVKALLRLCDVYNIPLATNRST 110 (115)
T ss_pred hHHHHHHHcCceeEEEEcCCCCCCCcccccHHHHHHHHHHcCCCEEEcHHH
Confidence 445555566777888887641 1 223467888888888888766543
No 418
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=29.08 E-value=2.6e+02 Score=23.09 Aligned_cols=29 Identities=7% Similarity=-0.128 Sum_probs=15.6
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEE
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~Vi 54 (219)
.+|.+|=+. +......++.+.+.|+|+|.
T Consensus 55 ~vdgiii~~-~~~~~~~~~~l~~~~iPvv~ 83 (268)
T cd06273 55 GVDGLALIG-LDHSPALLDLLARRGVPYVA 83 (268)
T ss_pred CCCEEEEeC-CCCCHHHHHHHHhCCCCEEE
Confidence 467554232 22223455666677777775
No 419
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=29.06 E-value=1.5e+02 Score=24.48 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=20.3
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCC---cEEEecCCCC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGM---RSVVYVPHIQ 60 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~---p~ViGTTG~~ 60 (219)
.+|+|+.++.++.+...++.+.+.|+ ..++|+..+.
T Consensus 191 ~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~ 229 (299)
T cd04509 191 KPDVIVLCGSGEDAATILKQAAEAGLTGGYPILGITLGL 229 (299)
T ss_pred CCCEEEEcccchHHHHHHHHHHHcCCCCCCcEEeccccc
Confidence 35666666665556666666666654 3444444443
No 420
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=29.02 E-value=3.9e+02 Score=23.29 Aligned_cols=47 Identities=4% Similarity=0.080 Sum_probs=33.2
Q ss_pred CChhhHHHHHHHHHHc-CCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 33 TDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 33 S~p~~~~~~~~~~~~~-g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
..|+.....++..++. ++..|+|..+... -..+..++++.++|+|..
T Consensus 50 ~~~~~a~~~a~~li~~~~v~aiig~~~s~~--~~~~~~~~~~~~ip~i~~ 97 (346)
T cd06330 50 GKPDEAIREARELVENEGVDMLIGLISSGV--ALAVAPVAEELKVFFIAT 97 (346)
T ss_pred CCHHHHHHHHHHHHhccCCcEEEcccchHH--HHHHHHHHHHcCCeEEEc
Confidence 4577777778777776 9999998754432 235666677788998863
No 421
>PLN02880 tyrosine decarboxylase
Probab=29.00 E-value=2.5e+02 Score=27.07 Aligned_cols=60 Identities=5% Similarity=0.058 Sum_probs=44.0
Q ss_pred ChhhHHHHHHHHHHcC-CcE-EEecCCCCh----hhHHHHHHHhhccCceEEEccChhHHHHHHHH
Q 027747 34 DASTVYDNVKQATAFG-MRS-VVYVPHIQL----ETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 93 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g-~p~-ViGTTG~~~----~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~ 93 (219)
.++.+.+.++...+.| +|+ |++|.|=+. +.+++|.++|+++++.+-+=.-++-++.+..+
T Consensus 222 d~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~ 287 (490)
T PLN02880 222 APELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPE 287 (490)
T ss_pred CHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHH
Confidence 4777888888777766 344 444444332 66899999999999999999888888765533
No 422
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=28.95 E-value=59 Score=27.25 Aligned_cols=37 Identities=16% Similarity=-0.129 Sum_probs=28.2
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
.+|++|--|..+.....+-.|+..|+|+|+.-.|...
T Consensus 278 ~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~ 314 (377)
T cd03798 278 AADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIP 314 (377)
T ss_pred hcCeeecchhhccCChHHHHHHhcCCCEEEecCCChH
Confidence 5898887777777777788888999998876655543
No 423
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=28.79 E-value=2.1e+02 Score=24.86 Aligned_cols=66 Identities=9% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhcc-CceEEEccChhHHHHHH
Q 027747 13 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA-SMGCLIAPTLSIGSILL 91 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~-~~~vv~spNfSlGv~ll 91 (219)
++.++. ..+|-+|=+|.... .+.+....+.++|+|..-.-... . ++|.|+.-|+.-|-.+.
T Consensus 49 i~~l~~-----~~vDGiI~~s~~~~-~~~l~~~~~~~iPvV~~~~~~~~------------~~~~~~V~~D~~~a~~~a~ 110 (279)
T PF00532_consen 49 IELLLQ-----RRVDGIILASSEND-DEELRRLIKSGIPVVLIDRYIDN------------PEGVPSVYIDNYEAGYEAT 110 (279)
T ss_dssp HHHHHH-----TTSSEEEEESSSCT-CHHHHHHHHTTSEEEEESS-SCT------------TCTSCEEEEEHHHHHHHHH
T ss_pred HHHHHh-----cCCCEEEEecccCC-hHHHHHHHHcCCCEEEEEeccCC------------cccCCEEEEcchHHHHHHH
Q ss_pred HHHHH
Q 027747 92 QQAAI 96 (219)
Q Consensus 92 ~~~~~ 96 (219)
..|.+
T Consensus 111 ~~Li~ 115 (279)
T PF00532_consen 111 EYLIK 115 (279)
T ss_dssp HHHHH
T ss_pred HHHHh
No 424
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=28.76 E-value=74 Score=28.73 Aligned_cols=36 Identities=8% Similarity=-0.070 Sum_probs=25.6
Q ss_pred CCcEEEECCChhhH-HHHHHHHHHcCCcEEEecC-CCC
Q 027747 25 ARAVVIDFTDASTV-YDNVKQATAFGMRSVVYVP-HIQ 60 (219)
Q Consensus 25 ~~DVvIDFS~p~~~-~~~~~~~~~~g~p~ViGTT-G~~ 60 (219)
.+|+||+-..+-.. ...-++|.++++|+|.+-| ||.
T Consensus 105 ~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~ 142 (286)
T cd01491 105 KFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLF 142 (286)
T ss_pred cCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccE
Confidence 68988887654433 4455889999999988655 554
No 425
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=28.69 E-value=1.5e+02 Score=28.16 Aligned_cols=41 Identities=7% Similarity=-0.067 Sum_probs=23.3
Q ss_pred HHHHHHc-CCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 42 VKQATAF-GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 42 ~~~~~~~-g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.+.+.+. ++|++....|.... +...+..++.++|++-+|--
T Consensus 394 ~~~~~~~~~KPvv~~~~gg~~~--~~~~~~L~~~Gip~f~~p~~ 435 (447)
T TIGR02717 394 IEGAKKSNEKPVVAGFMGGKSV--DPAKRILEENGIPNYTFPER 435 (447)
T ss_pred HHHHHhcCCCcEEEEecCCccH--HHHHHHHHhCCCCccCCHHH
Confidence 3444445 88998888764332 22333333467887765543
No 426
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=28.67 E-value=69 Score=28.69 Aligned_cols=82 Identities=15% Similarity=0.028 Sum_probs=45.7
Q ss_pred CCCcHHHHHHHHHHHhcCcccCCCccccccccccccCCCCceeEEEEEcCCCceEEE--------E-----EEccCCcEE
Q 027747 116 DFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTT--------V-----YFSRPGEVY 182 (219)
Q Consensus 116 DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~i~ihS~R~g~ivg~H~--------V-----~f~~~~E~i 182 (219)
..|=|-++..++.+...- . ...++++..+|.+.+.|.+. + .-...++.+
T Consensus 162 ~~~Y~~sK~~~e~~~~~~-------------~-----~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i 223 (348)
T PRK15181 162 LSPYAVTKYVNELYADVF-------------A-----RSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPI 223 (348)
T ss_pred CChhhHHHHHHHHHHHHH-------------H-----HHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCc
Confidence 356788888888765420 0 11356778888888887642 1 001234555
Q ss_pred EEEEeecCcc--ccHHHHHHHHHHhhcC-----CCeeeec
Q 027747 183 SIKHDITDVQ--SLMPGLILAIRKVVHL-----KNLVYGL 215 (219)
Q Consensus 183 ~i~H~a~sR~--~Fa~Gal~Aa~~l~~~-----~~g~y~m 215 (219)
.+--....+. +++.-+..|+.++... .++.|++
T Consensus 224 ~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~yni 263 (348)
T PRK15181 224 YINGDGSTSRDFCYIENVIQANLLSATTNDLASKNKVYNV 263 (348)
T ss_pred EEeCCCCceEeeEEHHHHHHHHHHHHhcccccCCCCEEEe
Confidence 5544444433 6677777776553321 2357776
No 427
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=28.66 E-value=51 Score=31.62 Aligned_cols=50 Identities=4% Similarity=-0.006 Sum_probs=32.5
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEE-----------ecCCCChhhH-HHHHHHhhccCceE
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVV-----------YVPHIQLETV-SALSAFCDKASMGC 78 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~Vi-----------GTTG~~~~~~-~~l~~~a~~~~~~v 78 (219)
-|.-.+|-++...++.+.+.+.|+.| |=|||++.++ +.+.+.|++.+.|-
T Consensus 21 SVCsahp~VieAAl~~a~~~~~pvLiEAT~NQVnq~GGYTGmtP~dF~~~V~~iA~~~g~~~ 82 (424)
T PF08013_consen 21 SVCSAHPLVIEAALERAKEDDSPVLIEATSNQVNQFGGYTGMTPADFRDFVREIADEVGFPR 82 (424)
T ss_dssp EE----HHHHHHHHHHCCCS-S-EEEEEETTTCSTT-TTTTB-HHHHHHHHHHHHHHCT--G
T ss_pred EecCCCHHHHHHHHHHHHhcCCeEEEEeccccccccCCcCCCCHHHHHHHHHHHHHHcCCch
Confidence 56778999999999999999999988 5579998875 44667776665543
No 428
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=28.65 E-value=1.9e+02 Score=24.22 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCcEEEecCCC--Ch--hhHHHHHHHhhc-cCceEEE
Q 027747 39 YDNVKQATAFGMRSVVYVPHI--QL--ETVSALSAFCDK-ASMGCLI 80 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~--~~--~~~~~l~~~a~~-~~~~vv~ 80 (219)
.+.++.|.+.|..+|+=-... ++ ++...+.+.+++ .+++++.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~ 124 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMA 124 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEE
Confidence 355788888888755532222 11 344555566665 5677654
No 429
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=28.65 E-value=1.8e+02 Score=21.71 Aligned_cols=36 Identities=11% Similarity=0.165 Sum_probs=26.8
Q ss_pred CCcEEEECCCh---hhHHHHHHHHHHcCCcEEEecCCCC
Q 027747 25 ARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVPHIQ 60 (219)
Q Consensus 25 ~~DVvIDFS~p---~~~~~~~~~~~~~g~p~ViGTTG~~ 60 (219)
+-|++|=||.+ ..+.+.++.|.++|+++|.=|...+
T Consensus 47 ~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 47 PGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 56888888866 6678888999999988775555443
No 430
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.64 E-value=1.2e+02 Score=26.73 Aligned_cols=47 Identities=6% Similarity=0.041 Sum_probs=33.1
Q ss_pred CChhhHHHHHHHHHHc-CCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 33 TDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 33 S~p~~~~~~~~~~~~~-g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+.|+...+.++..++. ++.+|+|... +. .-..+...+++.++|++..
T Consensus 50 ~~p~~a~~~~~~li~~~~v~~iiG~~~-s~-~~~a~~~~~~~~~ip~i~~ 97 (344)
T cd06348 50 GDEAEAINAFQTLINKDRVLAIIGPTL-SQ-QAFAADPIAERAGVPVVGP 97 (344)
T ss_pred CChHHHHHHHHHHhhhcCceEEECCCC-cH-HHHhhhHHHHhCCCCEEec
Confidence 4577888888888876 8999999652 22 2234556677789998863
No 431
>PRK11096 ansB L-asparaginase II; Provisional
Probab=28.60 E-value=1.4e+02 Score=27.77 Aligned_cols=62 Identities=15% Similarity=0.062 Sum_probs=44.1
Q ss_pred CcEEEECCChhhHHHHHHHHHHcC-CcEEEecCC---CChhhHHHHHHHhhccCceEEEccChhHHH
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFG-MRSVVYVPH---IQLETVSALSAFCDKASMGCLIAPTLSIGS 88 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g-~p~ViGTTG---~~~~~~~~l~~~a~~~~~~vv~spNfSlGv 88 (219)
++|.|=...|..-.+.++.+++.| .-+|+-.+| .+++-.+.|+++. ++++|||.++----|-
T Consensus 233 ~~V~il~~~pG~~~~~l~~~l~~~~~GiVl~g~G~Gn~~~~~~~~l~~a~-~~GipVV~~Sqc~~G~ 298 (347)
T PRK11096 233 PKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKTVFDTLATAA-KNGVAVVRSSRVPTGA 298 (347)
T ss_pred CeEEEEEeCCCCCHHHHHHHHhccCCEEEEEeECCCCCCHHHHHHHHHHH-HCCCEEEEeCCCCCCC
Confidence 567777778887788888888876 567776665 4444456677665 4689999977665554
No 432
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=28.60 E-value=2e+02 Score=23.69 Aligned_cols=44 Identities=7% Similarity=0.077 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHc-CCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 35 ASTVYDNVKQATAF-GMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 35 p~~~~~~~~~~~~~-g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
|+...+.++..++. ++..|+|...-. ....+..++++.++|++.
T Consensus 52 ~~~~~~~~~~l~~~~~v~~iig~~~~~--~~~~~~~~~~~~~iP~i~ 96 (299)
T cd04509 52 PARALAAARRLCQQEGVDALVGPVSSG--VALAVAPVAEALKIPLIS 96 (299)
T ss_pred HHHHHHHHHHHhcccCceEEEcCCCcH--HHHHHHHHHhhCCceEEe
Confidence 55555555555555 666666643321 122344444445666555
No 433
>COG0645 Predicted kinase [General function prediction only]
Probab=28.56 E-value=1.8e+02 Score=24.53 Aligned_cols=62 Identities=8% Similarity=0.042 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHH
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 97 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~ 97 (219)
+.+....+.|++.|.++|.=.|=+.+.+.+....+++..++++++--=.....++-.++.+.
T Consensus 63 ~~l~~~A~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR 124 (170)
T COG0645 63 DELLGRAELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAAR 124 (170)
T ss_pred HHHHHHHHHHHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHh
Confidence 44567788999999999998887777788889999988888877543344444444444443
No 434
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=28.52 E-value=1.7e+02 Score=25.03 Aligned_cols=59 Identities=8% Similarity=0.064 Sum_probs=37.8
Q ss_pred CCc-EEEECCChhhHHHHHHHHHHcCCcEEEecCC-CChhhHHHHHHHhhccCceEEEccChhHHH
Q 027747 25 ARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVPH-IQLETVSALSAFCDKASMGCLIAPTLSIGS 88 (219)
Q Consensus 25 ~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG-~~~~~~~~l~~~a~~~~~~vv~spNfSlGv 88 (219)
..+ +=|.|++|.+....-+...+++ .+.+|.-. ++.+| .+++. +.+.-.++||||...+
T Consensus 33 Gi~~iEit~~t~~a~~~i~~l~~~~~-~~~vGAGTVl~~~~---a~~a~-~aGA~FivsP~~~~~v 93 (204)
T TIGR01182 33 GLRVLEVTLRTPVALDAIRLLRKEVP-DALIGAGTVLNPEQ---LRQAV-DAGAQFIVSPGLTPEL 93 (204)
T ss_pred CCCEEEEeCCCccHHHHHHHHHHHCC-CCEEEEEeCCCHHH---HHHHH-HcCCCEEECCCCCHHH
Confidence 345 5688999887654444444444 46666543 66655 44443 2678899999997754
No 435
>PRK15452 putative protease; Provisional
Probab=28.50 E-value=2e+02 Score=27.56 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=44.0
Q ss_pred CCChhhHHHHHHHHHHcCCcEEEe-c---------CCCChhhHHHHHHHhhccCceEEEccChhHHH
Q 027747 32 FTDASTVYDNVKQATAFGMRSVVY-V---------PHIQLETVSALSAFCDKASMGCLIAPTLSIGS 88 (219)
Q Consensus 32 FS~p~~~~~~~~~~~~~g~p~ViG-T---------TG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv 88 (219)
-..|....+.++.|+++|..-|.- . ..|+.+++.+.-++|.+.++.+.++.|.-.--
T Consensus 6 Llapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e 72 (443)
T PRK15452 6 LLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHN 72 (443)
T ss_pred EEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCH
Confidence 445777788899999999988765 3 45666778887788888999999998865543
No 436
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=28.43 E-value=1.3e+02 Score=26.96 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=6.0
Q ss_pred EccCCcEEEEE
Q 027747 175 FSRPGEVYSIK 185 (219)
Q Consensus 175 f~~~~E~i~i~ 185 (219)
|.+.--+|+||
T Consensus 257 fC~~cnr~r~t 267 (334)
T TIGR02666 257 FCGTCNRLRLT 267 (334)
T ss_pred cccccCEEEEc
Confidence 55555555554
No 437
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.38 E-value=1.2e+02 Score=26.79 Aligned_cols=49 Identities=8% Similarity=0.020 Sum_probs=29.2
Q ss_pred ccccCHHHHHhcccCCCCCcEEEECCChhh--HHHHHH---HHHHcCCcEEEecCCCChh
Q 027747 8 PVMSDLTMVLGSISQSKARAVVIDFTDAST--VYDNVK---QATAFGMRSVVYVPHIQLE 62 (219)
Q Consensus 8 ~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~--~~~~~~---~~~~~g~p~ViGTTG~~~~ 62 (219)
..++++++++. .+|+||....++. ....+. .++..+.-+++-|+|++..
T Consensus 68 ~~~~~~~~~~~------~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~ 121 (311)
T PRK06130 68 RMEAGLAAAVS------GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPIT 121 (311)
T ss_pred EEeCCHHHHhc------cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHH
Confidence 34566777664 6999998875542 233333 2333444455788888754
No 438
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=28.30 E-value=1.5e+02 Score=25.91 Aligned_cols=36 Identities=3% Similarity=-0.159 Sum_probs=25.9
Q ss_pred CCcEEEECCC-hhhHHHHHHHHHHcCCcEEEecC-CCC
Q 027747 25 ARAVVIDFTD-ASTVYDNVKQATAFGMRSVVYVP-HIQ 60 (219)
Q Consensus 25 ~~DVvIDFS~-p~~~~~~~~~~~~~g~p~ViGTT-G~~ 60 (219)
.+|+|||-.. .++-...-+.|.+.++|+|-|-| ||.
T Consensus 91 ~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~ 128 (234)
T cd01484 91 QFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFK 128 (234)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCc
Confidence 6899998854 44444455888999999998754 554
No 439
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=28.12 E-value=1.5e+02 Score=28.15 Aligned_cols=47 Identities=9% Similarity=-0.037 Sum_probs=32.5
Q ss_pred CCChhhHHHHHHHHHHcCCcEEEe-cCC--C-ChhhHHHHHHHhhccCceEEEc
Q 027747 32 FTDASTVYDNVKQATAFGMRSVVY-VPH--I-QLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 32 FS~p~~~~~~~~~~~~~g~p~ViG-TTG--~-~~~~~~~l~~~a~~~~~~vv~s 81 (219)
.+.++-+.+.++.+.+.|+++.++ |+| + +++..++|.++- =-++.+|
T Consensus 85 pl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~g---ld~v~iS 135 (404)
T TIGR03278 85 VSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNG---VREVSFT 135 (404)
T ss_pred cccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcC---CCEEEEe
Confidence 344578899999999999999998 985 5 555555555541 1256555
No 440
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=28.11 E-value=3.6e+02 Score=23.71 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=47.4
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+|+.+.++.++++. .+|+||=...|..+.+.++.... .+.-+|.=..|.+-++ |+++.......+=.-
T Consensus 49 ~g~~~~~~~~e~~~------~aDiIiLavkP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~---l~~~l~~~~~vvR~M 119 (272)
T PRK12491 49 YGITITTNNNEVAN------SADILILSIKPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKS---TENEFDRKLKVIRVM 119 (272)
T ss_pred cCcEEeCCcHHHHh------hCCEEEEEeChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHH---HHHhcCCCCcEEEEC
Confidence 45656667777764 68998888889888887766543 3455677777998865 444432111234455
Q ss_pred cChhHH
Q 027747 82 PTLSIG 87 (219)
Q Consensus 82 pNfSlG 87 (219)
||...-
T Consensus 120 PN~~~~ 125 (272)
T PRK12491 120 PNTPVL 125 (272)
T ss_pred CChHHH
Confidence 887653
No 441
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=28.08 E-value=1.3e+02 Score=28.78 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=33.5
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
.+|.++.+ ..+|.|+|+|..|...+.+--. ++. --++|.++++ .++|-|+||
T Consensus 226 aME~Li~~----G~~~~VlDlTttEl~d~l~GGv-------------~sa-gp~Rl~AA~~-~GIP~Vvs~ 277 (403)
T PF06792_consen 226 AMERLIRE----GQFDGVLDLTTTELADELFGGV-------------LSA-GPDRLEAAAR-AGIPQVVSP 277 (403)
T ss_pred HHHHHHHc----CCcEEEEECcHHHHHHHHhCCC-------------CCC-CchHHHHHHH-cCCCEEEec
Confidence 56777764 4699999999999877664311 111 1136666654 677777765
No 442
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=28.06 E-value=65 Score=28.17 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=7.0
Q ss_pred HHHHHHHHcCCcEE
Q 027747 40 DNVKQATAFGMRSV 53 (219)
Q Consensus 40 ~~~~~~~~~g~p~V 53 (219)
..-++|++.++.++
T Consensus 93 ~vNR~AvE~~VDVL 106 (216)
T PRK03892 93 RVNRYAIERGVDAI 106 (216)
T ss_pred HHHHHHHhccccee
Confidence 34445555555554
No 443
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=28.01 E-value=1.9e+02 Score=27.56 Aligned_cols=99 Identities=10% Similarity=0.059 Sum_probs=65.0
Q ss_pred EEEECCC-hhhHHHHHHHHHHcCCcEEE---ecCCCChhhHHHHHHHhhccCceEEEccChh----------HHHHHHHH
Q 027747 28 VVIDFTD-ASTVYDNVKQATAFGMRSVV---YVPHIQLETVSALSAFCDKASMGCLIAPTLS----------IGSILLQQ 93 (219)
Q Consensus 28 VvIDFS~-p~~~~~~~~~~~~~g~p~Vi---GTTG~~~~~~~~l~~~a~~~~~~vv~spNfS----------lGv~ll~~ 93 (219)
..+.-|. ++.+.+..+++.+.|.+.|+ .+.||+. ++.|++.+...++|+..=+||+ +..-++.+
T Consensus 215 ya~NiT~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~--l~~l~~~~~~~~l~ih~Hra~~ga~~~~~~~Gis~~vl~k 292 (412)
T TIGR03326 215 YLANITAPVREMERRAELVADLGGQYVMVDVVVCGWSA--LQYIRELTEDLGLAIHAHRAMHAAFTRNPKHGISMFALAK 292 (412)
T ss_pred EEEEecCCHHHHHHHHHHHHHhCCCeEEEEeeccchHH--HHHHHHhhccCCeEEEEcCCcccccccCCCCcCcHHHHHH
Confidence 4555554 46788899999999998886 8889976 5567776555678887755543 33333444
Q ss_pred HHHHHhhhcCCeEEEecC-CCCCCCCcHHHHHHHHHHHh
Q 027747 94 AAISASFHYKNVEIVESR-PNARDFPSPDATQIANNLSN 131 (219)
Q Consensus 94 ~~~~aa~~~~dieIiE~H-h~K~DaPSGTA~~la~~i~~ 131 (219)
+.+.+. -|.-++=.. -.|.--+.-+.+.+++.+..
T Consensus 293 l~RLaG---aD~~~~~t~~~Gk~~~~~~~~~~~~~~~~~ 328 (412)
T TIGR03326 293 LYRLIG---VDQLHTGTAGVGKLEGGKEDTKQINDFLRQ 328 (412)
T ss_pred HHHHcC---CCeeeeCCCccCCCCCCHHHHHHHHHHHhC
Confidence 444443 466666666 44766666677777776653
No 444
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=27.87 E-value=58 Score=31.75 Aligned_cols=35 Identities=20% Similarity=0.407 Sum_probs=31.7
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEE
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSV 53 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~V 53 (219)
|+.++++ .+.++||-|..+... ..-.|+.+|+|.|
T Consensus 421 dl~~~~~------~arl~id~s~~eg~~-~~ieAiS~GiPqI 455 (519)
T TIGR03713 421 DLISALD------KLRLIIDLSKEPDLY-TQISGISAGIPQI 455 (519)
T ss_pred HHHHHHh------hheEEEECCCCCChH-HHHHHHHcCCCee
Confidence 7777876 689999999999999 9999999999999
No 445
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=27.84 E-value=2.1e+02 Score=21.86 Aligned_cols=56 Identities=9% Similarity=0.037 Sum_probs=36.9
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCc-EEEecCCCChhhHHHHHHHhhccCceEEEccChhH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSI 86 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p-~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSl 86 (219)
.+|++|=.+.+....+.++.| .++. +...++|++.-+ +.. +.++++++.-+|..+-
T Consensus 38 ~~d~ii~~~~~~~~~~~l~~~--~~Lk~I~~~~~G~d~id---~~~-a~~~gI~V~n~~g~~~ 94 (133)
T PF00389_consen 38 DADAIIVGSGTPLTAEVLEAA--PNLKLISTAGAGVDNID---LEA-AKERGIPVTNVPGYNA 94 (133)
T ss_dssp TESEEEESTTSTBSHHHHHHH--TT-SEEEESSSSCTTB----HHH-HHHTTSEEEE-TTTTH
T ss_pred CCeEEEEcCCCCcCHHHHhcc--ceeEEEEEcccccCccc---HHH-HhhCeEEEEEeCCcCC
Confidence 699988777776667777777 4555 445667887533 333 3458999999998653
No 446
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=27.78 E-value=1.1e+02 Score=30.67 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=30.6
Q ss_pred CChhhHHHHHHHHHHcCCcE--EEecCCCCh----hhHHHHHHHh---hccCce
Q 027747 33 TDASTVYDNVKQATAFGMRS--VVYVPHIQL----ETVSALSAFC---DKASMG 77 (219)
Q Consensus 33 S~p~~~~~~~~~~~~~g~p~--ViGTTG~~~----~~~~~l~~~a---~~~~~~ 77 (219)
-.++.+.+.++.|.+.|.|+ |++|.|=++ |.+++|.+++ +++++.
T Consensus 260 md~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~ 313 (608)
T TIGR03811 260 MDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIY 313 (608)
T ss_pred CCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCc
Confidence 35788899999999999886 565555433 4456666665 556653
No 447
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=27.78 E-value=1.9e+02 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=16.2
Q ss_pred CCcE-EEECCC--hhhHHHHHHHHHHcC--CcEEEecC
Q 027747 25 ARAV-VIDFTD--ASTVYDNVKQATAFG--MRSVVYVP 57 (219)
Q Consensus 25 ~~DV-vIDFS~--p~~~~~~~~~~~~~g--~p~ViGTT 57 (219)
.+|+ +||+++ ++...+.++...+.. ++++.|+.
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v 143 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNV 143 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCC
Confidence 4563 356653 334455555555544 45555443
No 448
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=27.76 E-value=1.9e+02 Score=26.57 Aligned_cols=59 Identities=14% Similarity=-0.021 Sum_probs=35.4
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhh-HHHHHHHHH---HcCCcEEEecCCCChhhH-HHHHHH
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDAST-VYDNVKQAT---AFGMRSVVYVPHIQLETV-SALSAF 70 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~-~~~~~~~~~---~~g~p~ViGTTG~~~~~~-~~l~~~ 70 (219)
.|+.+.++..+++. .+|+||-+.-+.. +.+.++... ..+..+|..+|+ +.... +.+.+.
T Consensus 67 ~Gi~~asd~~eaa~------~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~-~~~~~s~~l~~~ 130 (342)
T PRK12557 67 AGVKVVSDDAEAAK------HGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTV-SPVVLYYSLEGE 130 (342)
T ss_pred CCCEEeCCHHHHHh------CCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCC-CHHHHHHHHHHH
Confidence 35666777777764 6999997776665 555554333 345555555555 45444 455444
No 449
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=27.52 E-value=98 Score=29.47 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=37.4
Q ss_pred CCcE-EEECC-ChhhHHHHHHHHHHcCCcEEEecCCCChh----hHHHHHHHhhccCceEEEccChh
Q 027747 25 ARAV-VIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLE----TVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 25 ~~DV-vIDFS-~p~~~~~~~~~~~~~g~p~ViGTTG~~~~----~~~~l~~~a~~~~~~vv~spNfS 85 (219)
..+| .+|+. .|+. ++.++..+..+|+-.|--++- +++.|.++|++++++++.=.-|+
T Consensus 125 Gi~v~~vd~~~d~~~----l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~ 187 (432)
T PRK06702 125 GIDVTFFNPNLTADE----IVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLA 187 (432)
T ss_pred CCEEEEECCCCCHHH----HHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCC
Confidence 3453 45663 3433 455555566677777766666 78888888888888888766554
No 450
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=27.51 E-value=69 Score=26.32 Aligned_cols=28 Identities=14% Similarity=0.112 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCChhh
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQLET 63 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~~~ 63 (219)
....-|-.|--++|-|+||+.+|-+.++
T Consensus 95 ~L~~lN~~Y~~kFGfpFii~v~g~s~~~ 122 (158)
T TIGR03180 95 ALLEGNAAYEEKFGRIFLIRAAGRSAEE 122 (158)
T ss_pred HHHHHHHHHHHHCCCeEEEeeCCCCHHH
Confidence 3345677888899999999999998866
No 451
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=27.44 E-value=85 Score=28.62 Aligned_cols=63 Identities=14% Similarity=0.084 Sum_probs=28.9
Q ss_pred HHHHHHHhhccCceEEEccChhHHHH-HHHHHHHHHhhhc-CCeEEEecCCCCCCCCcHHHHHHHHHHHh
Q 027747 64 VSALSAFCDKASMGCLIAPTLSIGSI-LLQQAAISASFHY-KNVEIVESRPNARDFPSPDATQIANNLSN 131 (219)
Q Consensus 64 ~~~l~~~a~~~~~~vv~spNfSlGv~-ll~~~~~~aa~~~-~dieIiE~Hh~K~DaPSGTA~~la~~i~~ 131 (219)
++.|+++++..++||+ ||++|-. --..+.... +.- +.+-+... =.|.+-|--++..+.+.+..
T Consensus 186 ~elLkei~~~~~iPVV---~fAiGGI~TPedAa~~m-elGAdGVaVGSa-I~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 186 VELLLEVLKLGKLPVV---NFAAGGVATPADAALMM-QLGADGVFVGSG-IFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred HHHHHHHHHhCCCCEE---EeccCCCCCHHHHHHHH-HcCCCEEEEhHH-hhcCCCHHHHHHHHHHHHHH
Confidence 3455666655567765 5555532 111111111 111 22322221 11333466777777777755
No 452
>cd00255 nidG2 Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix. Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a potential role in the assembly and connection of networks. Nidogen consists of 3 globular domains (G1-G3), G3 is the lamin-binding domain, while G2 binds collagen IV and perlecan. Also found in hemicentin, a protein which functions at various cell-cell and cell-matrix junctions and might assist in refining broad regions of cell contact into oriented, line-shaped junctions. Nidogen G2 consists of an N-terminal EGF-like domain (excluded from this alignment model) and an 11-stranded beta-barrel with a central helix, a topology that exhibits high structural similarity to the green flourescent proteins of Cnidaria.
Probab=27.40 E-value=91 Score=27.38 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=26.4
Q ss_pred EEEcCCCceEEEEEEccCCcEEEEEEeecCcccc
Q 027747 161 SMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSL 194 (219)
Q Consensus 161 S~R~g~ivg~H~V~f~~~~E~i~i~H~a~sR~~F 194 (219)
|+=+|..--+=+|.|...+|+++|+|.+...+.+
T Consensus 80 slTGG~F~~~~~v~F~~~ge~l~I~Q~~~GlD~~ 113 (224)
T cd00255 80 SLTGGEFTRQAEVTFYTGGEKLRITQVARGLDSH 113 (224)
T ss_pred eccCceEEEEEEEEEcCCCEEEEEEEEEeccCcc
Confidence 3445555556668998779999999999988864
No 453
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=27.31 E-value=1.7e+02 Score=25.70 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHcCCcEE--Eec-C--CCChhhHHHHHHHhhccCceEEEc-cChhHHHHHHHHHHHHHhhhcCCeEEEecC
Q 027747 44 QATAFGMRSV--VYV-P--HIQLETVSALSAFCDKASMGCLIA-PTLSIGSILLQQAAISASFHYKNVEIVESR 111 (219)
Q Consensus 44 ~~~~~g~p~V--iGT-T--G~~~~~~~~l~~~a~~~~~~vv~s-pNfSlGv~ll~~~~~~aa~~~~dieIiE~H 111 (219)
++..+|+..+ .+. + ..+..++.+|.+.+++.++++|+. |+++- +.++.+++.. ++.+++.-
T Consensus 184 ~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~------~~~~~la~~~-g~~v~~ld 250 (282)
T cd01017 184 LARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASS------KIAETLAKET-GAKLLVLN 250 (282)
T ss_pred HHHHCCCeEEecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCh------HHHHHHHHHc-CCcEEEec
Confidence 3446677754 222 2 356678888888888889988876 66663 3334444432 45555543
No 454
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=27.18 E-value=2.8e+02 Score=23.60 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=26.7
Q ss_pred CCc---EEEECCCh--hhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 25 ARA---VVIDFTDA--STVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 25 ~~D---VvIDFS~p--~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
.+| +|||.+.+ +...+.+.++.+.|+|+++--|=++.
T Consensus 109 ~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~ 150 (224)
T cd04165 109 APDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDL 150 (224)
T ss_pred CCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 356 46776643 44567788888899998888887764
No 455
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=27.12 E-value=1e+02 Score=29.57 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=31.9
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCC--cEEEecCCCCh
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGM--RSVVYVPHIQL 61 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~--p~ViGTTG~~~ 61 (219)
.++||||=|+..+.+...++.+.+.|+ ++.||+.||..
T Consensus 243 ~~a~vVvl~~~~~~~~~ll~qa~~~g~~~~iwI~s~~w~~ 282 (510)
T cd06364 243 STAKVIVVFSSGPDLEPLIKEIVRRNITGKIWLASEAWAS 282 (510)
T ss_pred cCCeEEEEEeCcHHHHHHHHHHHHhCCCCcEEEEEchhhc
Confidence 468999999998888999999988776 57789988864
No 456
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=27.09 E-value=1.3e+02 Score=29.09 Aligned_cols=48 Identities=2% Similarity=-0.024 Sum_probs=36.6
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCC-hhhHHHHHHHhhccCceEEEcc
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~-~~~~~~l~~~a~~~~~~vv~sp 82 (219)
++.+...++...+.+.|+|+.--|-. ....+.|.+++++.++|++-++
T Consensus 188 ~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~ 236 (558)
T TIGR00118 188 PLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTL 236 (558)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEcc
Confidence 55677777888888999998666653 2345789999999999999654
No 457
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=27.04 E-value=4.4e+02 Score=23.42 Aligned_cols=29 Identities=3% Similarity=0.055 Sum_probs=17.7
Q ss_pred CCcEEEEC-CChhhHHHHHHHHHHcCCcEEE
Q 027747 25 ARAVVIDF-TDASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 25 ~~DVvIDF-S~p~~~~~~~~~~~~~g~p~Vi 54 (219)
.+|.+|=+ ..++.+.+.+ .+.+.|+|+|+
T Consensus 104 ~vdgIIl~~~~~~~~~~~l-~~~~~giPvV~ 133 (343)
T PRK10936 104 GADAILLGAVTPDGLNPDL-ELQAANIPVIA 133 (343)
T ss_pred CCCEEEEeCCChHHhHHHH-HHHHCCCCEEE
Confidence 57854433 3445544556 66778888884
No 458
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.03 E-value=2.6e+02 Score=23.12 Aligned_cols=17 Identities=0% Similarity=0.106 Sum_probs=9.2
Q ss_pred cCccccHHHHHHHHHHh
Q 027747 189 TDVQSLMPGLILAIRKV 205 (219)
Q Consensus 189 ~sR~~Fa~Gal~Aa~~l 205 (219)
.+-.-++.-|+..+.++
T Consensus 231 ~~~~~~g~~a~~~l~~~ 247 (270)
T cd06296 231 QPLREMGRAAVRLLLRL 247 (270)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 44445566666655543
No 459
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.99 E-value=2e+02 Score=24.15 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=22.7
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH-cCCcEEEecC
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-FGMRSVVYVP 57 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~-~g~p~ViGTT 57 (219)
..|+|.++. .+||+||-.+..... +..+...+ .|+|+|.--+
T Consensus 64 ~~n~E~i~~-----l~PDLIi~~~~~~~~-~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 64 TPNYEKIAA-----LKPDVVIDVGSDDPT-SIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred CCCHHHHHh-----cCCCEEEEecCCccc-hhHHHHHHhhCCCEEEEec
Confidence 347788876 378877765332210 23333333 7778655433
No 460
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=26.97 E-value=1.7e+02 Score=22.59 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.6
Q ss_pred cCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 48 FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 48 ~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
.+..+|+.++.- .+....|.++|++.++|++.+.+..
T Consensus 88 ~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 88 DGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred cCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 477899998876 4456789999999999999887753
No 461
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=26.95 E-value=3.8e+02 Score=22.46 Aligned_cols=31 Identities=19% Similarity=0.133 Sum_probs=21.5
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=++ .++...+.++.+.+.|+|+|.-
T Consensus 54 ~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~ 85 (289)
T cd01540 54 GAKGFVICVPDVKLGPAIVAKAKAYNMKVVAV 85 (289)
T ss_pred CCCEEEEccCchhhhHHHHHHHHhCCCeEEEe
Confidence 688555454 3345567788888999999864
No 462
>cd00424 PolY Y-family of DNA polymerases. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Most TLS polymerases are members of the Y-family, including Pol eta, Pol kappa/IV, Pol iota, Rev1, and Pol V, which is found exclusively in bacteria. In eukaryotes, the B-family polymerase Pol zeta also functions as a TLS polymerase. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in ord
Probab=26.86 E-value=1.2e+02 Score=27.51 Aligned_cols=54 Identities=15% Similarity=0.094 Sum_probs=34.5
Q ss_pred EEEccChhHHHHHHHHHHHHHhhhcCCeEE-------EecCC-CC-CCCCcHHHHHHHHHHHh
Q 027747 78 CLIAPTLSIGSILLQQAAISASFHYKNVEI-------VESRP-NA-RDFPSPDATQIANNLSN 131 (219)
Q Consensus 78 vv~spNfSlGv~ll~~~~~~aa~~~~dieI-------iE~Hh-~K-~DaPSGTA~~la~~i~~ 131 (219)
+++.+||..=..+..++...+.++-|.+|+ +|.=. .+ -..|.--|..+.+.|.+
T Consensus 66 ~~~~~~~~~y~~~s~~i~~~l~~~sp~ve~~siDE~~ldvt~~~~~~~~~~~la~~i~~~i~~ 128 (343)
T cd00424 66 ILVPARLDLYRRLSERLLSELEEVAPLVEVASIDELFLDLTGSARLLGLGSEVALRIKRHIAE 128 (343)
T ss_pred EEECCCcHHHHHHHHHHHHHHHHhCCcEEEccCCEEEEECCCchhccCCHHHHHHHHHHHHHH
Confidence 899999999888888888877765565554 44322 22 23345555566566553
No 463
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=26.86 E-value=1.2e+02 Score=27.88 Aligned_cols=59 Identities=7% Similarity=0.068 Sum_probs=36.6
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
.++|-|+.-.-+...++++..+ .+..+|+.+|.- .+....|.++|.+.++|+|++...+
T Consensus 93 np~v~i~~~~~~~~~~~~~~~~-~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 93 NSEVEIVPVVTDVTVEELEELV-KEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred CCCcEEEEEeccCCHHHHHHHh-cCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 3555443322222234444443 357888888853 3444668899999999999986543
No 464
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=26.78 E-value=4.1e+02 Score=22.80 Aligned_cols=42 Identities=10% Similarity=-0.086 Sum_probs=30.4
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCcE-EEecCCCChhhHH
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVS 65 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p~-ViGTTG~~~~~~~ 65 (219)
.++|+||=...++.....++.+.+.|... ++|+.++..+++.
T Consensus 189 ~~~~~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 231 (334)
T cd06342 189 ANPDAVFFGGYYPEAGPLVRQMRQLGLKAPFMGGDGLCDPEFI 231 (334)
T ss_pred cCCCEEEEcCcchhHHHHHHHHHHcCCCCcEEecCccCCHHHH
Confidence 36898886666766777888888887764 6788777655443
No 465
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.75 E-value=1.5e+02 Score=25.98 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=30.4
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCC--hhhHHHH---HHHHHHcCCcEEEecCCCChhh
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTD--ASTVYDN---VKQATAFGMRSVVYVPHIQLET 63 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~--p~~~~~~---~~~~~~~g~p~ViGTTG~~~~~ 63 (219)
+.+++|++++++ .+|+||.... .+...+. +..++..+..+++-||++...+
T Consensus 72 i~~~~d~~~a~~------~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~ 127 (287)
T PRK08293 72 ITLTTDLAEAVK------DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQ 127 (287)
T ss_pred eEEeCCHHHHhc------CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHH
Confidence 446778888775 6999887653 2222333 3333344555657778887654
No 466
>PRK13202 ureB urease subunit beta; Reviewed
Probab=26.73 E-value=12 Score=29.16 Aligned_cols=12 Identities=25% Similarity=0.401 Sum_probs=10.5
Q ss_pred CCCCCCcHHHHH
Q 027747 113 NARDFPSPDATQ 124 (219)
Q Consensus 113 ~K~DaPSGTA~~ 124 (219)
..+|.|||||++
T Consensus 60 ~RLdIpaGTavR 71 (104)
T PRK13202 60 YRLDIPAATAVR 71 (104)
T ss_pred cccccCCCCeEE
Confidence 379999999987
No 467
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=26.69 E-value=52 Score=29.66 Aligned_cols=19 Identities=11% Similarity=0.003 Sum_probs=14.3
Q ss_pred CCcEEE-ecCCCChhhHHHH
Q 027747 49 GMRSVV-YVPHIQLETVSAL 67 (219)
Q Consensus 49 g~p~Vi-GTTG~~~~~~~~l 67 (219)
++|+|+ |+||..++++.+.
T Consensus 205 ~iPLVlHGgSG~~~e~~~~a 224 (287)
T PF01116_consen 205 DIPLVLHGGSGLPDEQIRKA 224 (287)
T ss_dssp TSEEEESSCTTS-HHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHH
Confidence 899999 9999998764443
No 468
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=26.65 E-value=2.6e+02 Score=23.81 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=36.7
Q ss_pred CHHHHHhcccCCCCCcEEEECCCh------hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDA------STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p------~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
++.+.+. .+|+++--|.. +.....+-.|+..|+|+|.--.|..++ ..+....++++.+
T Consensus 248 ~l~~~~~------~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~-------~i~~~~~g~~~~~ 311 (355)
T cd03799 248 EVRELLR------AADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPE-------LVEDGETGLLVPP 311 (355)
T ss_pred HHHHHHH------hCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcch-------hhhCCCceEEeCC
Confidence 4555554 58888877777 777777778888888888644444331 2222335666665
No 469
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=26.62 E-value=66 Score=27.42 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=32.3
Q ss_pred CHHHHHhcccCCCCCcEEEECCChh--hHHHHHHHHHHcCCcEEEecCCC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDAS--TVYDNVKQATAFGMRSVVYVPHI 59 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~--~~~~~~~~~~~~g~p~ViGTTG~ 59 (219)
++.+++. .+|++|=-|..+ .....+..|+..|+|+|..-+|.
T Consensus 260 ~~~~~~~------~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~ 303 (366)
T cd03822 260 ELPELFS------AADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH 303 (366)
T ss_pred HHHHHHh------hcCEEEecccccccccchHHHHHHHcCCCEEecCCCC
Confidence 4556665 689999777777 66667778999999999877766
No 470
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=26.55 E-value=1.2e+02 Score=33.03 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=40.5
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCC-hhhHHHHHHHhhccCceEEEccC
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~-~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+.||-|+|+++...++.|- |+++|=-.+|.. ++.++.+-.++++++.++|.-..
T Consensus 434 lsIDS~~~~ViEaaLk~~~--G~~IINSIs~~~~~~~~~~~~~l~~kyga~vV~m~~ 488 (1229)
T PRK09490 434 IMIDSSKWEVIEAGLKCIQ--GKGIVNSISLKEGEEKFIEHARLVRRYGAAVVVMAF 488 (1229)
T ss_pred EEEeCCcHHHHHHHHhhcC--CCCEEEeCCCCCCCccHHHHHHHHHHhCCCEEEEec
Confidence 7899999988777666543 888888888875 34556677777788888887664
No 471
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=26.55 E-value=48 Score=27.41 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=26.8
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhh-----HHHHHHHHHHcCCcEEEecCCCChh
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDAST-----VYDNVKQATAFGMRSVVYVPHIQLE 62 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~-----~~~~~~~~~~~g~p~ViGTTG~~~~ 62 (219)
+.++.|++++. ++|+||+-..-+. ++..++..+.....+..-|++++-.
T Consensus 67 i~~~~dl~~~~-------~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~ 120 (180)
T PF02737_consen 67 ISFTTDLEEAV-------DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSIS 120 (180)
T ss_dssp EEEESSGGGGC-------TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HH
T ss_pred cccccCHHHHh-------hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHH
Confidence 34567888775 5899999873322 3444444445566666666676653
No 472
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=26.45 E-value=99 Score=28.61 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHcCC-c-EEEecCCCC----hhhHHHHHHHhhccCceEEEcc
Q 027747 35 ASTVYDNVKQATAFGM-R-SVVYVPHIQ----LETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~-p-~ViGTTG~~----~~~~~~l~~~a~~~~~~vv~sp 82 (219)
++.+.+.++.+.++|. | +|++|-|=+ -|.+++|.+++++.++.+=+=.
T Consensus 178 ~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDa 231 (373)
T PF00282_consen 178 IEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDA 231 (373)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEE
T ss_pred HHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeecc
Confidence 4667777788887765 4 354443322 2567788888877766554433
No 473
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=26.43 E-value=2.9e+02 Score=20.92 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=30.8
Q ss_pred EEEECCChhhHHHHHHHHH-----HcCCcEEEecCCCChhh-----HHHHHHHhhccCceEEEcc
Q 027747 28 VVIDFTDASTVYDNVKQAT-----AFGMRSVVYVPHIQLET-----VSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~-----~~g~p~ViGTTG~~~~~-----~~~l~~~a~~~~~~vv~sp 82 (219)
++.|.+.++.....-.+.. ..++|+|+.-|=.+... .++..+++++.+.|++-.+
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 144 (162)
T cd04106 80 LVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTS 144 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEE
Confidence 4778888876544333221 13778777666555311 2445566666677766444
No 474
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=26.33 E-value=4.2e+02 Score=24.79 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=47.5
Q ss_pred ChhhHHHHHHHHHHcCC-cEEEe-------cCCCChhh--HHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc-
Q 027747 34 DASTVYDNVKQATAFGM-RSVVY-------VPHIQLET--VSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY- 102 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~-p~ViG-------TTG~~~~~--~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~- 102 (219)
.++-....+++..+.|- .++++ +|++.... +..|..+-+..+.||++=|--|.|--=+...+..+|-.+
T Consensus 220 t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~G 299 (352)
T PRK13396 220 TIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAG 299 (352)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhC
Confidence 55666777777777766 47776 44554322 444555544457899998888888332222233333222
Q ss_pred CCeEEEecCCC
Q 027747 103 KNVEIVESRPN 113 (219)
Q Consensus 103 ~dieIiE~Hh~ 113 (219)
-|==++|.|..
T Consensus 300 AdGliIE~H~~ 310 (352)
T PRK13396 300 TDSLMIEVHPN 310 (352)
T ss_pred CCeEEEEecCC
Confidence 44449999974
No 475
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=26.33 E-value=1.7e+02 Score=26.65 Aligned_cols=63 Identities=11% Similarity=0.015 Sum_probs=43.5
Q ss_pred CcEEEECCChhhHHHHHHHHHHcC-CcEEEecCC---CChhhHHHHHHHhhccCceEEEccChhHHHH
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFG-MRSVVYVPH---IQLETVSALSAFCDKASMGCLIAPTLSIGSI 89 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g-~p~ViGTTG---~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ 89 (219)
++|.|=...|..-.+.++.+++.+ .-+|+-.+| ...+-.+.|+++.+ +++|||+++--.-|..
T Consensus 212 ~~V~il~~~pG~~~~~l~~~~~~~~~GlVl~~~G~Gn~p~~~~~~l~~a~~-~gipVV~~sq~~~G~v 278 (323)
T smart00870 212 PKVAIVKAYPGMDAELLDALLDSGAKGLVLEGTGAGNVPPDLLEALKEALE-RGIPVVRTSRCLNGRV 278 (323)
T ss_pred CcEEEEEeCCCCCHHHHHHHHhCCCCEEEEEeeCCCCCCHHHHHHHHHHHH-CCCEEEEeccCCCcee
Confidence 567777777877777888888877 567776666 34444566776653 6789988877666644
No 476
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=26.28 E-value=2.9e+02 Score=25.69 Aligned_cols=60 Identities=12% Similarity=0.053 Sum_probs=41.6
Q ss_pred ChhhHHHHHHHHHHcCCcEEEec-----------CCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHH
Q 027747 34 DASTVYDNVKQATAFGMRSVVYV-----------PHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 93 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGT-----------TG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~ 93 (219)
+++.+.+.++.+.+.|++++=|. -|+..+.+..|.+++++.++|++-.+==.-.+.++.+
T Consensus 130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~ 200 (360)
T PRK12595 130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAVISEIVNPADVEVALD 200 (360)
T ss_pred CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHH
Confidence 45566666777777777766554 5667777788888888888888877766666655543
No 477
>PF15151 RGCC: Response gene to complement 32 protein family
Probab=26.20 E-value=17 Score=28.73 Aligned_cols=46 Identities=20% Similarity=0.172 Sum_probs=35.8
Q ss_pred cCHHHHHhcccCCCCCc-EEEECCChhhH-----HHHHHHHHHcCCcEEEecCCCChh
Q 027747 11 SDLTMVLGSISQSKARA-VVIDFTDASTV-----YDNVKQATAFGMRSVVYVPHIQLE 62 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~D-VvIDFS~p~~~-----~~~~~~~~~~g~p~ViGTTG~~~~ 62 (219)
.+|.++|+ .+| ||=||+.|-.- .++++.+.+....-|.--+|+++.
T Consensus 19 ~eL~d~L~------EFd~Vvedf~sP~~~r~f~Y~ehL~~mKRrs~~svsD~SGi~ds 70 (121)
T PF15151_consen 19 DELSDLLC------EFDAVVEDFSSPAEKRHFRYDEHLEEMKRRSSASVSDSSGISDS 70 (121)
T ss_pred HHHHHHHH------HHHHHHHHhcCchhhccchHHHHHHHHHHhcCCccccccCcccc
Confidence 57888987 566 88899999765 678888877777777666899874
No 478
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=26.18 E-value=94 Score=28.12 Aligned_cols=30 Identities=13% Similarity=0.216 Sum_probs=27.8
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEE
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~Vi 54 (219)
.+|++|.-++++.+.+.+++|.++++|+++
T Consensus 36 ~a~~vv~p~~~edv~~~l~~a~~~~ip~~v 65 (305)
T PRK12436 36 KADVFVAPTNYDEIQEVIKYANKYNIPVTF 65 (305)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHcCCCEEE
Confidence 489999999999999999999999999877
No 479
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.16 E-value=3.6e+02 Score=22.00 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=15.6
Q ss_pred CCc-EEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARA-VVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+| ++|..+.++. ..++.+.+.|+|+|.=
T Consensus 54 ~vdgiii~~~~~~~--~~~~~~~~~~ipvV~~ 83 (266)
T cd06278 54 RVDGVIVTSGTLSS--ELAEECRRNGIPVVLI 83 (266)
T ss_pred CCCEEEEecCCCCH--HHHHHHhhcCCCEEEE
Confidence 566 3444333332 3366666777777653
No 480
>COG1260 INO1 Myo-inositol-1-phosphate synthase [Lipid metabolism]
Probab=26.15 E-value=1.2e+02 Score=28.50 Aligned_cols=67 Identities=16% Similarity=0.207 Sum_probs=47.3
Q ss_pred CCCcEEEECCC---hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh---HHHHHHHH
Q 027747 24 KARAVVIDFTD---ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS---IGSILLQQ 93 (219)
Q Consensus 24 ~~~DVvIDFS~---p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS---lGv~ll~~ 93 (219)
...|+++.|+- .+++.-.+..|++.|+++|=++.=+-..+ ..+.++++++++|++ .+=- +|..++.+
T Consensus 131 ~~tE~lvny~p~gs~~a~~~YA~aal~aG~afvN~~P~~iA~d-P~~~~~fee~g~pi~--GDD~ksq~GaTi~h~ 203 (362)
T COG1260 131 AKTEVLVNYLPVGSESASYFYAAAALAAGVAFVNAIPVFIASD-PAWVELFEEKGLPIA--GDDIKSQTGATILHR 203 (362)
T ss_pred cCccccccccccchhHHHHHHHHHHHHcCCceecccCccccCC-HHHHHHHHHcCCcee--ccchhhhcCCceeHH
Confidence 35678888874 35566777888999999999887554433 467777878888765 4544 67777655
No 481
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=25.92 E-value=1e+02 Score=28.01 Aligned_cols=48 Identities=15% Similarity=0.108 Sum_probs=33.3
Q ss_pred CHHHHHhcccCCCCCcEEEECCCh-----hhHHHHHHHHHHcCCc----EEEecCCC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDA-----STVYDNVKQATAFGMR----SVVYVPHI 59 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p-----~~~~~~~~~~~~~g~p----~ViGTTG~ 59 (219)
|+...|.++.+...+||||+..+. +.....++.+.+.|+. +.||+-|+
T Consensus 175 d~~~~L~~lk~~~~~~viv~~~~~~~~~~~~~~~i~~qa~~~Gm~~~~y~~i~~d~~ 231 (382)
T cd06371 175 GAREALKKVRSADRVRVVIMCMHSVLIGGEEQRLLLETALEMGMTDGRYVFIPYDTL 231 (382)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeeccccCcHHHHHHHHHHHHcCCcCCcEEEEEeccc
Confidence 555555554332347999987765 5567888999999998 67777654
No 482
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=25.90 E-value=62 Score=28.96 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=27.9
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHH-HHHHHHcCCcEEEecC
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDN-VKQATAFGMRSVVYVP 57 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~-~~~~~~~g~p~ViGTT 57 (219)
.+++++++. ..++| ++|||-.-..++.. +-++++-.+..|+||=
T Consensus 127 ~~d~~l~~l--~~~~~~iiVDFHAEaTSEK~A~g~~lDGrvsaV~GTH 172 (253)
T PF13277_consen 127 AADRLLEEL--KEETDIIIVDFHAEATSEKQAMGWYLDGRVSAVVGTH 172 (253)
T ss_dssp HHHHHHHH-------SEEEEEEE-S-HHHHHHHHHHHBTTBSEEEEES
T ss_pred HHHHHHHhc--cccCCEEEEEeecCcHHHHHHHHHHhCCcEEEEEeCC
Confidence 455666542 12566 79999876666544 5788899999999994
No 483
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=25.82 E-value=3e+02 Score=20.84 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=35.6
Q ss_pred EEEECCChhhHHHHHHHH---H----HcCCcEEEecCCCChhh-----HHHHHHHhhccCceEE-EccChhHHHHH
Q 027747 28 VVIDFTDASTVYDNVKQA---T----AFGMRSVVYVPHIQLET-----VSALSAFCDKASMGCL-IAPTLSIGSIL 90 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~---~----~~g~p~ViGTTG~~~~~-----~~~l~~~a~~~~~~vv-~spNfSlGv~l 90 (219)
+++|.+.++...+.-.+. . ..++|+|+.-+=.+..+ .+...++++..+.+++ +|+.-..|+.-
T Consensus 79 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 79 LVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDK 154 (164)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHH
Confidence 688999887654433222 1 24788887777665321 2345566655556544 44455556653
No 484
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=25.80 E-value=1.5e+02 Score=27.64 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=35.6
Q ss_pred HHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCce--EEEccChh
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG--CLIAPTLS 85 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~--vv~spNfS 85 (219)
...+++.++.++|+++-|-.-+-++++.--+.+++++.| +++-.+-+
T Consensus 137 ~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~ 185 (347)
T COG2089 137 LPLIKYIAKKGKPIILSTGMATIEEIEEAVAILRENGNPDIALLHCTSA 185 (347)
T ss_pred hHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCC
Confidence 567899999999999887666667777777778888888 66655443
No 485
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=25.79 E-value=1.2e+02 Score=26.61 Aligned_cols=19 Identities=11% Similarity=-0.036 Sum_probs=13.3
Q ss_pred HHHHHHcCCcEEEecC--CCCh
Q 027747 42 VKQATAFGMRSVVYVP--HIQL 61 (219)
Q Consensus 42 ~~~~~~~g~p~ViGTT--G~~~ 61 (219)
..+|.+.|.-+| ||| ||+.
T Consensus 140 ~l~a~~~G~D~I-GTTLsGYT~ 160 (229)
T COG3010 140 GLNAHKLGFDII-GTTLSGYTG 160 (229)
T ss_pred HHHHHHcCCcEE-ecccccccC
Confidence 345667777776 888 7776
No 486
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=25.77 E-value=1.4e+02 Score=25.93 Aligned_cols=47 Identities=6% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcE-EEecCCCChhhH
Q 027747 13 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRS-VVYVPHIQLETV 64 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~-ViGTTG~~~~~~ 64 (219)
+..+..+ +||+|+=+..+......++.+.+.|.+. ++|++|+..++.
T Consensus 185 v~~l~~~-----~pd~v~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 232 (312)
T cd06346 185 VAAAAAG-----GPDALVVIGYPETGSGILRSAYEQGLFDKFLLTDGMKSDSF 232 (312)
T ss_pred HHHHHhc-----CCCEEEEecccchHHHHHHHHHHcCCCCceEeeccccChHH
No 487
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=25.75 E-value=1.6e+02 Score=29.92 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=45.7
Q ss_pred CCCcEEEECCChhhHHHHH---HHHHHcCCcEEEecCCCChhhHH----HHHHHhhccCceEEE-ccChhHHHHH
Q 027747 24 KARAVVIDFTDASTVYDNV---KQATAFGMRSVVYVPHIQLETVS----ALSAFCDKASMGCLI-APTLSIGSIL 90 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~---~~~~~~g~p~ViGTTG~~~~~~~----~l~~~a~~~~~~vv~-spNfSlGv~l 90 (219)
.++|++|+--.+..++.|+ -..+|.|+|+|+.=.=.|..+.. +.+++.+.-++||+- +++-..|..-
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 4799876666565565555 56678999999997766654431 245666778899884 5677777433
No 488
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=25.68 E-value=1.6e+02 Score=22.35 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=26.4
Q ss_pred CCcEEEECCCh---hhHHHHHHHHHHcCCcEEEecCCCChh
Q 027747 25 ARAVVIDFTDA---STVYDNVKQATAFGMRSVVYVPHIQLE 62 (219)
Q Consensus 25 ~~DVvIDFS~p---~~~~~~~~~~~~~g~p~ViGTTG~~~~ 62 (219)
+-|++|=+|.. ..+.+.++.|.+.|.|+| +-|+....
T Consensus 47 ~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi-~iT~~~~s 86 (120)
T cd05710 47 EKSVVILASHSGNTKETVAAAKFAKEKGATVI-GLTDDEDS 86 (120)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHcCCeEE-EEECCCCC
Confidence 46888888865 567778888899998755 45555443
No 489
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=25.65 E-value=1.6e+02 Score=27.30 Aligned_cols=63 Identities=10% Similarity=-0.020 Sum_probs=43.1
Q ss_pred CcEEEECCChhhHHHHHHHHHHcC-CcEEEecCC---CChhhHHHHHHHhhccCceEEEccChhHHHH
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFG-MRSVVYVPH---IQLETVSALSAFCDKASMGCLIAPTLSIGSI 89 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g-~p~ViGTTG---~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ 89 (219)
++|.|=+..|..-.+.++.+.+.| .-+|+-.+| ..+.-.+.|+++++ +++|||.++--.-|..
T Consensus 239 p~V~il~~~pG~~~~ll~~~~~~g~~GlVl~g~G~Gn~p~~~~~al~~a~~-~GipVV~~Sr~~~G~v 305 (349)
T TIGR00520 239 PKVDIIYAYQNAPPLIVNAVLDAGAKGIVLAGVGNGSLSAAGLKVNETAAK-LGVPIVRSSRVPDGMV 305 (349)
T ss_pred CcEEEEEECCCCCHHHHHHHHhCCCCEEEEEeECCCCCCHHHHHHHHHHHH-CCCEEEEEccCCCCcc
Confidence 467676777777777788888776 567777776 34444566777653 6799998776555543
No 490
>PRK08322 acetolactate synthase; Reviewed
Probab=25.64 E-value=1.4e+02 Score=28.61 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCC-hhhHHHHHHHhhccCceEEEcc
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~-~~~~~~l~~~a~~~~~~vv~sp 82 (219)
++.+...++...+.+.|+|+.=-|.. ..-.+.|.+++++.++|++-++
T Consensus 183 ~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~ 231 (547)
T PRK08322 183 PKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQ 231 (547)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEcc
Confidence 45556666666677889888655543 3346789999999999999655
No 491
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=25.59 E-value=1.1e+02 Score=26.45 Aligned_cols=77 Identities=14% Similarity=0.050 Sum_probs=43.1
Q ss_pred ccccCHHHHHhcccCCCCCcEEEECCChh-------h-HHHHHHHH--HHcCCcEEEec--CCCChhhHHHHHHHhhccC
Q 027747 8 PVMSDLTMVLGSISQSKARAVVIDFTDAS-------T-VYDNVKQA--TAFGMRSVVYV--PHIQLETVSALSAFCDKAS 75 (219)
Q Consensus 8 ~v~~~l~~~l~~~~~~~~~DVvIDFS~p~-------~-~~~~~~~~--~~~g~p~ViGT--TG~~~~~~~~l~~~a~~~~ 75 (219)
.+++++++++. .++.+|=.|... . -.+..+.. ...++.+|.|. +|++.++++.-...+ .
T Consensus 60 ~v~~~l~eal~------~~~~vv~tt~~~~~~~~~~~~~~~~~~~~~~~~~~~aLvFG~E~~GL~~~~l~~cd~~v---~ 130 (233)
T TIGR00050 60 KVVDDLDEALD------DCDLVVGTSARSRNLQRPLLTPRELAPKLVAYKGKIAIVFGREDSGLTNEELLKCHVLV---S 130 (233)
T ss_pred EEECCHHHHHh------cCCEEEEECCCcCCCCCCcCCHHHHHHHHHhhcCCEEEEECCCCCCCCHHHHHhCCEEE---E
Confidence 56889999997 466666444210 0 01111111 24578999997 899986544332222 2
Q ss_pred ceE---EEccChhHHHHHHHH
Q 027747 76 MGC---LIAPTLSIGSILLQQ 93 (219)
Q Consensus 76 ~~v---v~spNfSlGv~ll~~ 93 (219)
||. +-|=|.|.-+.++..
T Consensus 131 IP~~~~~~SLNla~Av~I~ly 151 (233)
T TIGR00050 131 IPTSEEYPSLNLSHAVAVILY 151 (233)
T ss_pred ecCCCCCCeeeHHHHHHHHHH
Confidence 333 345577777766643
No 492
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=25.52 E-value=3.5e+02 Score=25.23 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=51.2
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh---------HHHH--HHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS---------IGSI--LLQQ 93 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS---------lGv~--ll~~ 93 (219)
.++-+| ||.|--..+-+++|++.|+..+.- =+.+++++|.+.+.+.++-+=+.|+.. .|+. -+.+
T Consensus 79 ~~~~Ii-f~gp~K~~~~l~~a~~~Gv~~i~v---DS~~El~~i~~~~~~~~v~lRi~~~~~~~~~~~~~KFGi~~~~~~~ 154 (394)
T cd06831 79 SPENII-YTNPCKQASQIKYAAKVGVNIMTC---DNEIELKKIARNHPNAKLLLHIATEDNIGGEEMNMKFGTTLKNCRH 154 (394)
T ss_pred CcCCEE-EeCCCCCHHHHHHHHHCCCCEEEE---CCHHHHHHHHHhCCCCcEEEEEeccCCCCCCccCCCCCCCHHHHHH
Confidence 455555 999999999999999999975432 235678888877744343333445422 2332 2334
Q ss_pred HHHHHhhhcCCeEEEecC
Q 027747 94 AAISASFHYKNVEIVESR 111 (219)
Q Consensus 94 ~~~~aa~~~~dieIiE~H 111 (219)
+++.+.+ ..++++-.|
T Consensus 155 ~l~~~~~--~~l~~~Gih 170 (394)
T cd06831 155 LLECAKE--LDVQIVGVK 170 (394)
T ss_pred HHHHHHH--CCCeEEEEE
Confidence 5555544 368888887
No 493
>PF09664 DUF2399: Protein of unknown function C-terminus (DUF2399); InterPro: IPR024465 This domain is found in archaeal, bacterial and eukaryotic proteins. Its function is unknown.
Probab=25.38 E-value=1.9e+02 Score=23.56 Aligned_cols=68 Identities=7% Similarity=-0.012 Sum_probs=47.5
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-hhHHHHHHHhhccCceEEEccChh-HHHHHHHHHHHHH
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-ETVSALSAFCDKASMGCLIAPTLS-IGSILLQQAAISA 98 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-~~~~~l~~~a~~~~~~vv~spNfS-lGv~ll~~~~~~a 98 (219)
|.=+=||.++...++. .....+..|||.|.-. .....|+.++ +.+.++-|+.-|= -|+.+..++.+..
T Consensus 21 V~VvENp~Vf~~~~~~-~~~~~~pLVCt~G~p~~A~~~LL~~L~-~~g~~l~y~GDfDp~Gl~IA~~l~~r~ 90 (152)
T PF09664_consen 21 VYVVENPAVFSALADE-LGASCPPLVCTSGQPSAAARRLLDRLA-AAGARLYYSGDFDPEGLRIANRLIQRY 90 (152)
T ss_pred EEEEecHHHHHHHHHh-cCCCCCeEEEcCCcHHHHHHHHHHHHH-hCCCEEEEecCCCHHHHHHHHHHHHHh
Confidence 4448899988877776 4456777779999744 3456666664 4789999999994 4666656655543
No 494
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=25.36 E-value=2e+02 Score=24.21 Aligned_cols=43 Identities=28% Similarity=0.304 Sum_probs=22.7
Q ss_pred HHHHHHHHHcCCcEEE----ecCCCCh------------hhHHHHHHHhhccCceEEEc
Q 027747 39 YDNVKQATAFGMRSVV----YVPHIQL------------ETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 39 ~~~~~~~~~~g~p~Vi----GTTG~~~------------~~~~~l~~~a~~~~~~vv~s 81 (219)
.+.++.|.+.|..+|+ ..||+.. ..++.|.+++++.++.+++.
T Consensus 22 ~~~i~~A~~~g~dlvv~PE~~l~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G 80 (253)
T cd07583 22 ESLIEEAAAAGADLIVLPEMWNTGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVAG 80 (253)
T ss_pred HHHHHHHHHCCCCEEEcCCccCCCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEec
Confidence 4444555555666654 4455532 12455666666666666543
No 495
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=25.35 E-value=1.1e+02 Score=27.64 Aligned_cols=27 Identities=4% Similarity=0.028 Sum_probs=21.0
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
-+.+.+.++.+.++|+|+.|.|.|+..
T Consensus 123 ~pG~~efl~~L~~~GIpv~IvS~G~~~ 149 (277)
T TIGR01544 123 KDGYENFFDKLQQHSIPVFIFSAGIGN 149 (277)
T ss_pred CcCHHHHHHHHHHCCCcEEEEeCCcHH
Confidence 456677888888888888888888864
No 496
>PLN03108 Rab family protein; Provisional
Probab=25.31 E-value=3.9e+02 Score=22.02 Aligned_cols=93 Identities=11% Similarity=-0.002 Sum_probs=46.1
Q ss_pred EEEECCChhhHHHHHHHH---H---HcCCcEEEecCCCChh-----hHHHHHHHhhccCceEEE-ccChhHHHHH-HHHH
Q 027747 28 VVIDFTDASTVYDNVKQA---T---AFGMRSVVYVPHIQLE-----TVSALSAFCDKASMGCLI-APTLSIGSIL-LQQA 94 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~---~---~~g~p~ViGTTG~~~~-----~~~~l~~~a~~~~~~vv~-spNfSlGv~l-l~~~ 94 (219)
+++|.+.++......++. . ..++|+++.-+=.+.. ..+..++++++.+.+++- |+.-..|+.- |..+
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l 163 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT 163 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 477889888665432322 1 2367765554433321 124556667667777654 4444555554 3455
Q ss_pred HHHHhhhc-CCeEEEecCCCCCCCCcH
Q 027747 95 AISASFHY-KNVEIVESRPNARDFPSP 120 (219)
Q Consensus 95 ~~~aa~~~-~dieIiE~Hh~K~DaPSG 120 (219)
++.+-+.. .+......--.+++.|+|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (210)
T PLN03108 164 AAKIYKKIQDGVFDVSNESYGIKVGYG 190 (210)
T ss_pred HHHHHHHhhhccccccccccccccccC
Confidence 55443322 121111111136777777
No 497
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=25.29 E-value=3.6e+02 Score=23.03 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=25.4
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCC
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI 59 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~ 59 (219)
..+|++||++....+...++.....|.-+.+|..+.
T Consensus 228 ~~~d~~i~~~~~~~~~~~~~~l~~~G~~v~~g~~~~ 263 (336)
T cd08276 228 RGVDHVVEVGGPGTLAQSIKAVAPGGVISLIGFLSG 263 (336)
T ss_pred CCCcEEEECCChHHHHHHHHhhcCCCEEEEEccCCC
Confidence 468999999877776766666666676666776544
No 498
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.16 E-value=1.5e+02 Score=29.24 Aligned_cols=48 Identities=4% Similarity=0.011 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCC-ChhhHHHHHHHhhccCceEEEccC
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHI-QLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~-~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+.+.+.++...+.+.|+++--.|- ..+-.+.|.+++++.++||+.+++
T Consensus 188 ~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~ 236 (550)
T COG0028 188 EAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLM 236 (550)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccC
Confidence 557888888888899988876663 334457899999999999998765
No 499
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=25.15 E-value=1.4e+02 Score=27.34 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=37.9
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.++|-|+.-.-+...+++.... .+..+|+.+|.- .+....|.++|.+.++|++++.-.
T Consensus 93 np~v~v~~~~~~~~~~~~~~~~-~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~~ 150 (339)
T PRK07688 93 NSDVRVEAIVQDVTAEELEELV-TGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGACV 150 (339)
T ss_pred CCCcEEEEEeccCCHHHHHHHH-cCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeee
Confidence 4666554443333344554443 356888888863 445567899999999999997643
No 500
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.04 E-value=1.4e+02 Score=25.59 Aligned_cols=59 Identities=7% Similarity=0.052 Sum_probs=38.7
Q ss_pred EEEECCChhhHHHHHHHHHHcCC--cEEEecCC-CChhhHHHHHHHhhccCceEEEccChhHHHHH
Q 027747 28 VVIDFTDASTVYDNVKQATAFGM--RSVVYVPH-IQLETVSALSAFCDKASMGCLIAPTLSIGSIL 90 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~--p~ViGTTG-~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~l 90 (219)
+=|=|++|.+....-+...+++- .+++|.-. ++.+| .+.+. +.+...++||++.-.+.-
T Consensus 42 iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~---~~~a~-~aGA~FivsP~~~~~v~~ 103 (213)
T PRK06552 42 IEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVT---ARLAI-LAGAQFIVSPSFNRETAK 103 (213)
T ss_pred EEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHH---HHHHH-HcCCCEEECCCCCHHHHH
Confidence 34667888876655555556643 37777654 56554 44433 377889999999987644
Done!