Query 027747
Match_columns 219
No_of_seqs 114 out of 1021
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 00:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027747.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027747hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ijp_A DHPR, dihydrodipicolina 100.0 1.5E-69 5.2E-74 482.1 22.2 201 4-219 73-284 (288)
2 4f3y_A DHPR, dihydrodipicolina 100.0 1E-68 3.5E-73 473.2 22.7 199 6-219 60-269 (272)
3 3qy9_A DHPR, dihydrodipicolina 100.0 4E-68 1.4E-72 462.6 20.6 197 4-218 40-243 (243)
4 1vm6_A DHPR, dihydrodipicolina 100.0 6.3E-68 2.1E-72 457.0 19.0 169 25-219 53-224 (228)
5 1p9l_A Dihydrodipicolinate red 100.0 2.3E-65 7.9E-70 445.7 23.1 198 11-219 36-242 (245)
6 1dih_A Dihydrodipicolinate red 100.0 2.1E-64 7.2E-69 445.0 21.8 201 4-219 57-268 (273)
7 1f06_A MESO-diaminopimelate D- 99.2 7.2E-13 2.5E-17 117.9 -3.1 205 6-218 45-302 (320)
8 2yv2_A Succinyl-COA synthetase 99.0 3.6E-10 1.2E-14 100.1 6.9 80 5-90 54-135 (297)
9 2yv1_A Succinyl-COA ligase [AD 99.0 4.6E-10 1.6E-14 99.3 6.0 80 5-90 54-134 (294)
10 1oi7_A Succinyl-COA synthetase 99.0 6.6E-10 2.2E-14 98.0 6.6 80 5-90 48-128 (288)
11 2nu8_A Succinyl-COA ligase [AD 98.7 4.7E-08 1.6E-12 86.0 8.3 79 5-89 48-127 (288)
12 3mwd_B ATP-citrate synthase; A 98.3 1.2E-06 4.2E-11 78.9 7.8 76 5-84 62-139 (334)
13 2dc1_A L-aspartate dehydrogena 98.3 5.2E-07 1.8E-11 76.1 4.9 161 9-188 39-206 (236)
14 2fp4_A Succinyl-COA ligase [GD 97.9 3.1E-05 1.1E-09 68.6 8.7 75 5-84 55-131 (305)
15 3cea_A MYO-inositol 2-dehydrog 97.5 0.00069 2.4E-08 59.3 10.9 100 5-110 54-158 (346)
16 3ff4_A Uncharacterized protein 97.4 0.00019 6.5E-09 55.6 5.8 73 5-90 45-117 (122)
17 3kux_A Putative oxidoreductase 97.4 0.0013 4.3E-08 58.2 10.9 87 6-96 52-141 (352)
18 2glx_A 1,5-anhydro-D-fructose 97.4 0.0015 5E-08 56.8 11.2 88 5-96 45-136 (332)
19 3bio_A Oxidoreductase, GFO/IDH 97.3 0.00024 8.3E-09 62.2 5.6 73 25-97 65-139 (304)
20 3e9m_A Oxidoreductase, GFO/IDH 97.3 0.0021 7.3E-08 56.3 11.6 88 5-96 50-141 (330)
21 3ing_A Homoserine dehydrogenas 97.3 9.7E-05 3.3E-09 66.1 2.9 106 12-129 73-182 (325)
22 1j5p_A Aspartate dehydrogenase 97.3 0.00021 7.1E-09 62.1 4.8 114 6-129 47-171 (253)
23 4hkt_A Inositol 2-dehydrogenas 97.2 0.0025 8.5E-08 55.6 11.2 87 5-96 48-137 (331)
24 3euw_A MYO-inositol dehydrogen 97.2 0.0014 4.8E-08 57.5 9.6 101 4-110 48-151 (344)
25 3evn_A Oxidoreductase, GFO/IDH 97.2 0.0029 9.9E-08 55.3 11.6 89 4-96 49-141 (329)
26 3upl_A Oxidoreductase; rossman 97.2 0.00062 2.1E-08 63.5 7.5 99 6-110 92-191 (446)
27 1tlt_A Putative oxidoreductase 97.2 0.0011 3.9E-08 57.5 8.7 74 5-84 51-125 (319)
28 1ydw_A AX110P-like protein; st 97.2 0.0013 4.5E-08 58.2 9.2 75 7-85 57-132 (362)
29 3e82_A Putative oxidoreductase 97.2 0.0029 1E-07 56.3 11.4 87 6-96 52-141 (364)
30 3q2i_A Dehydrogenase; rossmann 97.2 0.002 7E-08 56.8 10.3 88 5-96 59-149 (354)
31 3i23_A Oxidoreductase, GFO/IDH 97.1 0.0032 1.1E-07 55.6 11.0 100 5-110 49-151 (349)
32 2d59_A Hypothetical protein PH 97.1 0.0012 4.2E-08 51.8 7.4 76 5-91 63-138 (144)
33 3fhl_A Putative oxidoreductase 97.1 0.0029 9.9E-08 56.1 10.6 87 6-96 50-139 (362)
34 3pff_A ATP-citrate synthase; p 97.1 0.00073 2.5E-08 67.4 7.2 75 5-83 548-624 (829)
35 3moi_A Probable dehydrogenase; 97.1 0.0019 6.5E-08 57.9 9.0 79 5-87 48-127 (387)
36 3do5_A HOM, homoserine dehydro 97.0 0.0003 1E-08 62.9 3.3 111 8-130 65-181 (327)
37 3c1a_A Putative oxidoreductase 97.0 0.0021 7.3E-08 55.8 8.6 86 7-96 55-143 (315)
38 2ho3_A Oxidoreductase, GFO/IDH 97.0 0.0046 1.6E-07 53.8 10.7 85 8-97 50-137 (325)
39 3db2_A Putative NADPH-dependen 97.0 0.0018 6.3E-08 57.1 8.2 87 5-95 50-139 (354)
40 3gdo_A Uncharacterized oxidore 97.0 0.004 1.4E-07 55.2 10.3 87 6-96 50-139 (358)
41 3e18_A Oxidoreductase; dehydro 97.0 0.006 2.1E-07 54.1 11.4 89 4-96 48-139 (359)
42 4ew6_A D-galactose-1-dehydroge 97.0 0.003 1E-07 55.6 9.1 81 4-87 63-144 (330)
43 1h6d_A Precursor form of gluco 97.0 0.0023 7.7E-08 58.6 8.5 97 8-110 137-236 (433)
44 3rc1_A Sugar 3-ketoreductase; 96.9 0.0031 1.1E-07 55.8 8.9 88 5-96 73-163 (350)
45 3ezy_A Dehydrogenase; structur 96.9 0.0032 1.1E-07 55.3 8.8 100 5-110 47-150 (344)
46 3mz0_A Inositol 2-dehydrogenas 96.8 0.0074 2.5E-07 52.9 10.3 98 7-110 52-153 (344)
47 3oqb_A Oxidoreductase; structu 96.8 0.0062 2.1E-07 54.1 9.6 87 5-95 66-156 (383)
48 3c8m_A Homoserine dehydrogenas 96.8 0.00082 2.8E-08 59.9 3.8 85 9-98 72-163 (331)
49 3mtj_A Homoserine dehydrogenas 96.7 0.00079 2.7E-08 62.7 3.2 86 6-95 63-149 (444)
50 3uuw_A Putative oxidoreductase 96.6 0.0065 2.2E-07 52.4 8.6 76 5-86 52-128 (308)
51 1iuk_A Hypothetical protein TT 96.6 0.0029 9.9E-08 49.5 5.2 76 5-91 56-131 (140)
52 3f4l_A Putative oxidoreductase 96.5 0.013 4.4E-07 51.5 9.9 88 5-96 49-139 (345)
53 3ec7_A Putative dehydrogenase; 96.5 0.018 6.2E-07 50.9 10.5 98 7-110 73-174 (357)
54 1y81_A Conserved hypothetical 96.5 0.0092 3.2E-07 46.5 7.6 75 5-90 55-129 (138)
55 1zh8_A Oxidoreductase; TM0312, 96.4 0.013 4.4E-07 51.5 9.1 86 6-95 66-155 (340)
56 3ohs_X Trans-1,2-dihydrobenzen 96.3 0.03 1E-06 48.8 10.9 100 5-110 49-152 (334)
57 3m2t_A Probable dehydrogenase; 96.3 0.011 3.8E-07 52.4 8.3 79 6-88 53-132 (359)
58 3u3x_A Oxidoreductase; structu 96.3 0.032 1.1E-06 49.5 10.9 85 7-95 74-162 (361)
59 3btv_A Galactose/lactose metab 96.2 0.018 6.2E-07 52.6 9.0 85 8-96 76-169 (438)
60 2p2s_A Putative oxidoreductase 96.1 0.026 8.7E-07 49.2 9.3 87 6-96 51-141 (336)
61 1lc0_A Biliverdin reductase A; 96.1 0.024 8.3E-07 48.9 8.9 79 5-88 50-129 (294)
62 3dmy_A Protein FDRA; predicted 96.0 0.022 7.7E-07 53.4 8.7 76 5-84 19-94 (480)
63 3o9z_A Lipopolysaccaride biosy 95.9 0.036 1.2E-06 48.3 9.1 81 6-86 49-134 (312)
64 2ixa_A Alpha-N-acetylgalactosa 95.8 0.06 2E-06 49.1 10.6 98 7-110 73-177 (444)
65 2csu_A 457AA long hypothetical 95.7 0.013 4.5E-07 54.3 5.9 69 5-79 50-125 (457)
66 3v5n_A Oxidoreductase; structu 95.6 0.028 9.6E-07 50.9 7.7 80 8-87 92-173 (417)
67 3oa2_A WBPB; oxidoreductase, s 95.6 0.049 1.7E-06 47.6 8.9 81 6-86 49-135 (318)
68 4had_A Probable oxidoreductase 95.6 0.039 1.3E-06 48.1 8.2 88 5-96 69-160 (350)
69 1xea_A Oxidoreductase, GFO/IDH 95.5 0.055 1.9E-06 46.9 9.0 88 5-97 47-138 (323)
70 2duw_A Putative COA-binding pr 95.3 0.028 9.7E-07 43.9 5.7 75 5-90 56-130 (145)
71 4ina_A Saccharopine dehydrogen 95.3 0.024 8.3E-07 51.4 6.0 93 11-110 66-167 (405)
72 3dty_A Oxidoreductase, GFO/IDH 95.2 0.06 2.1E-06 48.2 8.5 83 5-87 61-148 (398)
73 2nvw_A Galactose/lactose metab 95.2 0.077 2.6E-06 49.2 9.3 85 8-96 95-189 (479)
74 3ip3_A Oxidoreductase, putativ 95.2 0.054 1.8E-06 47.3 7.8 86 7-96 53-143 (337)
75 4fb5_A Probable oxidoreductase 95.2 0.086 2.9E-06 46.0 9.0 78 5-86 77-156 (393)
76 4gmf_A Yersiniabactin biosynth 95.1 0.039 1.3E-06 49.8 6.9 75 4-85 51-129 (372)
77 4gqa_A NAD binding oxidoreduct 94.9 0.1 3.4E-06 46.7 8.8 88 5-96 79-170 (412)
78 2g0t_A Conserved hypothetical 94.6 0.076 2.6E-06 47.9 7.3 72 4-81 73-150 (350)
79 1ebf_A Homoserine dehydrogenas 93.2 0.1 3.6E-06 46.8 5.4 81 6-87 51-148 (358)
80 2ejw_A HDH, homoserine dehydro 92.7 0.036 1.2E-06 49.5 1.7 77 9-94 57-134 (332)
81 2z2v_A Hypothetical protein PH 92.7 0.24 8.3E-06 44.3 7.1 89 11-110 69-157 (365)
82 4h3v_A Oxidoreductase domain p 91.5 0.9 3.1E-05 39.3 9.1 78 5-86 58-140 (390)
83 3abi_A Putative uncharacterize 91.3 0.22 7.5E-06 44.0 5.1 74 25-102 77-150 (365)
84 2obn_A Hypothetical protein; s 89.7 0.87 3E-05 41.0 7.5 71 4-81 57-133 (349)
85 1b7g_O Protein (glyceraldehyde 89.2 0.44 1.5E-05 42.3 5.2 86 6-102 64-155 (340)
86 4djd_C C/Fe-SP, corrinoid/iron 86.6 1.5 5.3E-05 40.7 7.2 71 25-102 153-225 (446)
87 3k96_A Glycerol-3-phosphate de 84.9 1.8 6E-05 38.5 6.6 75 7-87 87-167 (356)
88 2czc_A Glyceraldehyde-3-phosph 84.7 1.1 3.8E-05 39.4 5.1 47 7-60 67-113 (334)
89 3d1l_A Putative NADP oxidoredu 83.8 1.5 5.2E-05 36.3 5.4 52 6-63 55-109 (266)
90 2h9a_A Carbon monoxide dehydro 82.9 3.2 0.00011 38.4 7.6 67 28-102 158-224 (445)
91 3ic5_A Putative saccharopine d 82.9 3.2 0.00011 29.1 6.1 31 25-55 69-99 (118)
92 2yci_X 5-methyltetrahydrofolat 82.7 4.9 0.00017 34.6 8.3 101 27-132 80-192 (271)
93 1cf2_P Protein (glyceraldehyde 82.7 1.4 4.7E-05 39.0 4.9 47 7-60 66-112 (337)
94 2h78_A Hibadh, 3-hydroxyisobut 81.1 4.6 0.00016 34.0 7.5 73 6-85 46-125 (302)
95 1f6y_A 5-methyltetrahydrofolat 80.4 3.6 0.00012 35.2 6.5 53 28-83 72-124 (262)
96 2gf2_A Hibadh, 3-hydroxyisobut 80.1 3.3 0.00011 34.6 6.2 74 6-87 43-123 (296)
97 1jay_A Coenzyme F420H2:NADP+ o 79.5 3.4 0.00012 32.8 5.8 69 11-87 56-138 (212)
98 1gr0_A Inositol-3-phosphate sy 78.9 5.1 0.00017 36.3 7.3 81 10-96 127-212 (367)
99 3cky_A 2-hydroxymethyl glutara 78.5 5.9 0.0002 33.1 7.3 71 6-83 47-124 (301)
100 2qjg_A Putative aldolase MJ040 76.1 15 0.0005 30.6 9.0 81 11-97 103-200 (273)
101 1vpd_A Tartronate semialdehyde 76.0 7.7 0.00026 32.4 7.3 71 6-83 48-125 (299)
102 3flu_A DHDPS, dihydrodipicolin 75.4 3.9 0.00013 35.3 5.4 46 35-80 27-81 (297)
103 3h5d_A DHDPS, dihydrodipicolin 75.4 3.3 0.00011 36.2 4.9 45 36-80 28-81 (311)
104 3l21_A DHDPS, dihydrodipicolin 75.3 3.7 0.00013 35.7 5.2 47 35-81 35-90 (304)
105 3dz1_A Dihydrodipicolinate syn 74.7 3 0.0001 36.4 4.5 24 105-128 135-161 (313)
106 1yb4_A Tartronic semialdehyde 74.4 5.5 0.00019 33.2 5.9 71 6-83 45-122 (295)
107 1evy_A Glycerol-3-phosphate de 74.1 5.3 0.00018 34.7 5.9 75 6-86 72-158 (366)
108 2ahr_A Putative pyrroline carb 73.9 4.3 0.00015 33.3 5.1 54 6-66 47-100 (259)
109 3rui_A Ubiquitin-like modifier 73.2 2.4 8.4E-05 37.8 3.5 42 13-60 133-175 (340)
110 3tak_A DHDPS, dihydrodipicolin 73.0 4.3 0.00015 34.9 5.0 46 35-80 21-75 (291)
111 3fkr_A L-2-keto-3-deoxyarabona 72.3 3.7 0.00013 35.8 4.4 16 48-63 76-91 (309)
112 2axq_A Saccharopine dehydrogen 71.3 15 0.00052 33.7 8.6 72 25-98 88-161 (467)
113 1w3i_A EDA, 2-keto-3-deoxy glu 71.3 6.9 0.00024 33.6 5.9 73 35-108 19-97 (293)
114 3s5o_A 4-hydroxy-2-oxoglutarat 70.8 3.9 0.00013 35.6 4.2 13 114-126 155-167 (307)
115 4dpp_A DHDPS 2, dihydrodipicol 70.7 13 0.00046 33.2 7.9 46 35-80 79-133 (360)
116 3qfe_A Putative dihydrodipicol 70.7 3.8 0.00013 35.9 4.2 16 48-63 79-94 (318)
117 3pef_A 6-phosphogluconate dehy 70.5 13 0.00043 31.1 7.3 70 6-82 44-120 (287)
118 3k13_A 5-methyltetrahydrofolat 70.5 19 0.00064 31.4 8.6 69 28-98 87-164 (300)
119 2uyy_A N-PAC protein; long-cha 70.2 8.3 0.00028 32.6 6.1 72 6-84 73-151 (316)
120 3tri_A Pyrroline-5-carboxylate 69.4 23 0.00079 29.8 8.8 71 5-85 49-124 (280)
121 2nuw_A 2-keto-3-deoxygluconate 69.1 7.6 0.00026 33.3 5.7 75 35-110 19-99 (288)
122 3on7_A Oxidoreductase, iron/as 68.9 5.4 0.00018 34.1 4.7 42 29-71 6-47 (280)
123 1ff9_A Saccharopine reductase; 68.8 16 0.00056 33.2 8.2 72 25-98 68-141 (450)
124 3m5v_A DHDPS, dihydrodipicolin 68.6 5.4 0.00018 34.5 4.7 14 114-127 147-160 (301)
125 3vk5_A MOEO5; TIM barrel, tran 68.3 13 0.00046 32.4 7.0 55 26-80 41-101 (286)
126 8abp_A L-arabinose-binding pro 68.2 31 0.001 28.0 9.1 33 25-57 57-90 (306)
127 1yj8_A Glycerol-3-phosphate de 68.1 5 0.00017 35.2 4.4 74 6-86 90-176 (375)
128 3bc8_A O-phosphoseryl-tRNA(SEC 68.1 5.9 0.0002 36.6 5.0 62 34-95 183-248 (450)
129 1x0v_A GPD-C, GPDH-C, glycerol 68.0 6.7 0.00023 33.7 5.1 73 7-86 78-159 (354)
130 3m9w_A D-xylose-binding peripl 67.3 21 0.00072 29.4 8.0 33 25-57 58-91 (313)
131 2lnd_A De novo designed protei 67.0 10 0.00034 27.6 5.0 72 28-99 30-103 (112)
132 1z82_A Glycerol-3-phosphate de 66.6 2.9 9.8E-05 36.1 2.5 73 7-86 69-144 (335)
133 3cpr_A Dihydrodipicolinate syn 66.5 8.6 0.00029 33.3 5.5 23 36-58 37-61 (304)
134 2ehh_A DHDPS, dihydrodipicolin 66.2 8.3 0.00028 33.1 5.3 13 114-126 139-151 (294)
135 1y8q_A Ubiquitin-like 1 activa 65.7 7 0.00024 34.5 4.9 42 13-60 119-162 (346)
136 3b4u_A Dihydrodipicolinate syn 65.2 8.1 0.00028 33.2 5.1 13 114-126 146-158 (294)
137 3qze_A DHDPS, dihydrodipicolin 65.0 6.4 0.00022 34.4 4.4 23 36-58 44-68 (314)
138 2ioj_A Hypothetical protein AF 64.8 5.2 0.00018 30.3 3.4 41 43-85 67-108 (139)
139 3txv_A Probable tagatose 6-pho 64.7 11 0.00039 34.9 6.2 67 12-78 7-86 (450)
140 3rot_A ABC sugar transporter, 64.6 22 0.00074 29.1 7.5 35 25-59 61-96 (297)
141 1xky_A Dihydrodipicolinate syn 64.5 8.4 0.00029 33.3 5.1 13 114-126 151-163 (301)
142 3na8_A Putative dihydrodipicol 64.4 5.1 0.00017 35.0 3.7 23 36-58 45-69 (315)
143 1q7z_A 5-methyltetrahydrofolat 64.3 8 0.00027 36.7 5.2 70 28-100 387-463 (566)
144 3ghf_A Septum site-determining 64.0 5.9 0.0002 29.9 3.5 52 27-82 49-103 (120)
145 3gbv_A Putative LACI-family tr 64.0 33 0.0011 27.7 8.4 34 24-57 68-102 (304)
146 1jw9_B Molybdopterin biosynthe 63.3 8.7 0.0003 32.0 4.8 32 25-56 121-153 (249)
147 3a5f_A Dihydrodipicolinate syn 63.3 8.1 0.00028 33.1 4.7 46 35-80 21-75 (291)
148 1o5k_A DHDPS, dihydrodipicolin 62.7 7.6 0.00026 33.6 4.5 47 34-80 31-86 (306)
149 2cvz_A Dehydrogenase, 3-hydrox 62.7 20 0.00069 29.4 7.0 59 25-84 55-117 (289)
150 1f6k_A N-acetylneuraminate lya 62.3 9.4 0.00032 32.7 5.0 47 34-80 22-78 (293)
151 3lua_A Response regulator rece 62.3 38 0.0013 23.9 7.7 57 6-62 31-94 (140)
152 3l49_A ABC sugar (ribose) tran 61.6 52 0.0018 26.4 9.3 33 25-57 61-94 (291)
153 3l6u_A ABC-type sugar transpor 61.3 39 0.0014 27.1 8.5 34 25-58 64-98 (293)
154 3g1w_A Sugar ABC transporter; 61.1 33 0.0011 27.9 8.0 33 25-57 61-94 (305)
155 2rcy_A Pyrroline carboxylate r 61.0 12 0.00041 30.5 5.2 53 5-63 44-98 (262)
156 3pdu_A 3-hydroxyisobutyrate de 61.0 17 0.00059 30.3 6.3 72 6-84 44-122 (287)
157 2zyd_A 6-phosphogluconate dehy 60.5 21 0.00071 32.8 7.2 75 6-84 62-140 (480)
158 1nvm_B Acetaldehyde dehydrogen 60.4 7.4 0.00025 33.9 3.9 51 5-56 51-104 (312)
159 2wkj_A N-acetylneuraminate lya 59.7 13 0.00043 32.2 5.3 23 36-58 32-56 (303)
160 3si9_A DHDPS, dihydrodipicolin 59.6 7.9 0.00027 33.8 4.0 47 34-80 41-96 (315)
161 2iz1_A 6-phosphogluconate dehy 59.4 28 0.00094 31.8 7.8 75 6-84 52-130 (474)
162 4gsl_A Ubiquitin-like modifier 58.6 5.4 0.00018 38.5 2.9 42 13-60 425-467 (615)
163 3e96_A Dihydrodipicolinate syn 58.4 26 0.0009 30.3 7.2 23 36-58 33-57 (316)
164 1zud_1 Adenylyltransferase THI 58.1 11 0.00038 31.5 4.5 32 25-56 118-150 (251)
165 2csu_A 457AA long hypothetical 58.1 61 0.0021 29.5 9.9 70 24-97 367-447 (457)
166 3qha_A Putative oxidoreductase 58.1 55 0.0019 27.4 9.1 70 6-83 58-131 (296)
167 1jub_A Dihydroorotate dehydrog 57.7 34 0.0012 28.9 7.7 18 34-51 104-121 (311)
168 2yxg_A DHDPS, dihydrodipicolin 57.6 21 0.00073 30.4 6.4 13 114-126 139-151 (289)
169 3nvt_A 3-deoxy-D-arabino-heptu 57.5 19 0.00065 32.5 6.2 58 34-91 154-222 (385)
170 1vjp_A MYO-inositol-1-phosphat 57.4 16 0.00056 33.3 5.8 70 25-96 135-233 (394)
171 4fgw_A Glycerol-3-phosphate de 57.3 13 0.00045 33.6 5.2 76 6-89 104-189 (391)
172 4dll_A 2-hydroxy-3-oxopropiona 57.1 47 0.0016 28.3 8.5 72 6-84 74-151 (320)
173 1zco_A 2-dehydro-3-deoxyphosph 56.6 31 0.0011 29.3 7.2 59 35-93 36-105 (262)
174 2h9a_B CO dehydrogenase/acetyl 56.5 44 0.0015 29.2 8.3 69 28-101 125-197 (310)
175 4gbj_A 6-phosphogluconate dehy 56.4 36 0.0012 29.0 7.6 74 5-85 47-125 (297)
176 2pcq_A Putative dihydrodipicol 56.4 22 0.00075 30.3 6.2 21 40-61 54-74 (283)
177 3obb_A Probable 3-hydroxyisobu 56.0 21 0.00073 30.6 6.1 71 5-82 45-122 (300)
178 3ksm_A ABC-type sugar transpor 55.7 48 0.0017 26.2 8.0 33 25-57 58-92 (276)
179 1tx2_A DHPS, dihydropteroate s 55.6 21 0.00073 31.0 6.1 51 27-83 117-167 (297)
180 2vc6_A MOSA, dihydrodipicolina 55.0 14 0.00047 31.6 4.7 47 34-80 19-74 (292)
181 2e6f_A Dihydroorotate dehydrog 54.9 30 0.001 29.4 6.9 57 28-84 126-197 (314)
182 2r8w_A AGR_C_1641P; APC7498, d 54.6 48 0.0017 28.9 8.3 46 35-80 54-108 (332)
183 3doj_A AT3G25530, dehydrogenas 54.4 30 0.001 29.3 6.8 70 6-82 64-140 (310)
184 3lte_A Response regulator; str 54.3 33 0.0011 23.8 6.1 55 7-62 33-92 (132)
185 2rjn_A Response regulator rece 54.2 52 0.0018 23.6 7.4 50 7-57 34-87 (154)
186 2ojp_A DHDPS, dihydrodipicolin 54.0 22 0.00074 30.4 5.8 47 34-80 20-75 (292)
187 2r91_A 2-keto-3-deoxy-(6-phosp 53.9 41 0.0014 28.6 7.5 36 35-70 18-59 (286)
188 3qsg_A NAD-binding phosphogluc 53.8 43 0.0015 28.5 7.7 64 5-74 69-134 (312)
189 2y5s_A DHPS, dihydropteroate s 53.8 19 0.00066 31.3 5.5 51 26-83 98-148 (294)
190 2pgd_A 6-phosphogluconate dehy 53.7 38 0.0013 30.9 7.8 77 5-85 49-129 (482)
191 3do6_A Formate--tetrahydrofola 53.5 18 0.00062 34.2 5.5 58 38-95 349-409 (543)
192 2v9d_A YAGE; dihydrodipicolini 53.5 15 0.00052 32.4 4.8 47 34-80 50-105 (343)
193 1i36_A Conserved hypothetical 53.5 52 0.0018 26.6 7.9 57 11-73 48-104 (264)
194 3qm3_A Fructose-bisphosphate a 52.9 26 0.0009 31.4 6.3 74 6-80 13-104 (357)
195 2g1u_A Hypothetical protein TM 52.8 63 0.0022 24.0 7.8 63 25-93 84-148 (155)
196 3cf4_G Acetyl-COA decarboxylas 52.8 25 0.00085 27.4 5.6 49 38-87 24-73 (170)
197 3pzx_A Formate--tetrahydrofola 52.7 15 0.0005 35.0 4.7 50 38-89 363-415 (557)
198 3c24_A Putative oxidoreductase 52.7 5.6 0.00019 33.3 1.8 55 25-84 67-125 (286)
199 3u5e_c L32, RP73, YL38, 60S ri 52.6 29 0.001 25.2 5.6 17 38-55 10-26 (105)
200 3l6d_A Putative oxidoreductase 52.2 42 0.0014 28.4 7.4 71 6-83 52-127 (306)
201 1tt5_A APPBP1, amyloid protein 52.2 11 0.00038 35.4 3.9 35 25-59 124-160 (531)
202 2p4q_A 6-phosphogluconate dehy 52.1 43 0.0015 30.9 7.9 74 5-82 57-134 (497)
203 3vh1_A Ubiquitin-like modifier 51.7 8.1 0.00028 37.1 2.9 43 12-60 425-468 (598)
204 2hmc_A AGR_L_411P, dihydrodipi 51.7 18 0.00063 31.9 5.1 21 41-61 84-104 (344)
205 1gvf_A Tagatose-bisphosphate a 51.3 20 0.00069 31.1 5.2 56 25-80 17-79 (286)
206 3d0c_A Dihydrodipicolinate syn 51.0 20 0.00068 31.1 5.1 47 34-80 31-86 (314)
207 3pm6_A Putative fructose-bisph 50.9 20 0.00068 31.6 5.1 56 25-80 26-87 (306)
208 2rdm_A Response regulator rece 50.8 36 0.0012 23.6 5.8 51 10-60 35-90 (132)
209 2izz_A Pyrroline-5-carboxylate 50.8 29 0.001 29.6 6.2 53 6-64 71-126 (322)
210 2rfg_A Dihydrodipicolinate syn 50.3 20 0.0007 30.7 5.1 47 34-80 19-74 (297)
211 3daq_A DHDPS, dihydrodipicolin 50.0 22 0.00076 30.4 5.2 47 34-80 21-76 (292)
212 4a18_G RPL30; ribosome, eukary 49.7 38 0.0013 24.5 5.8 74 37-130 9-82 (104)
213 2h3h_A Sugar ABC transporter, 49.1 72 0.0025 26.1 8.2 32 25-56 57-89 (313)
214 3lkv_A Uncharacterized conserv 48.9 86 0.0029 26.0 8.8 84 24-112 68-177 (302)
215 3h5n_A MCCB protein; ubiquitin 48.9 17 0.0006 32.0 4.5 32 25-56 208-241 (353)
216 3q94_A Fructose-bisphosphate a 48.8 32 0.0011 29.9 6.0 56 25-80 20-85 (288)
217 3h75_A Periplasmic sugar-bindi 48.5 49 0.0017 27.7 7.2 74 25-98 62-137 (350)
218 3p6l_A Sugar phosphate isomera 48.4 36 0.0012 27.4 6.1 74 35-113 62-138 (262)
219 3lmz_A Putative sugar isomeras 48.3 26 0.0009 28.3 5.2 94 12-112 31-135 (257)
220 3gt0_A Pyrroline-5-carboxylate 48.2 27 0.00093 28.4 5.3 54 5-64 49-105 (247)
221 3f4w_A Putative hexulose 6 pho 48.0 53 0.0018 25.8 6.9 31 25-55 77-109 (211)
222 4e38_A Keto-hydroxyglutarate-a 48.0 40 0.0014 28.3 6.4 42 12-63 98-139 (232)
223 4a7p_A UDP-glucose dehydrogena 47.9 81 0.0028 28.7 8.9 77 7-90 72-166 (446)
224 3jy6_A Transcriptional regulat 47.8 66 0.0023 25.7 7.6 32 24-57 62-93 (276)
225 3eb2_A Putative dihydrodipicol 47.8 9.4 0.00032 33.0 2.5 33 35-67 24-62 (300)
226 3j21_Z 50S ribosomal protein L 47.7 49 0.0017 23.5 6.1 13 65-77 47-59 (99)
227 2wqp_A Polysialic acid capsule 47.6 21 0.00073 31.9 4.8 78 28-112 151-237 (349)
228 2x7x_A Sensor protein; transfe 46.7 96 0.0033 25.6 8.7 34 24-57 61-95 (325)
229 1aj0_A DHPS, dihydropteroate s 46.0 19 0.00065 31.1 4.2 50 27-83 92-141 (282)
230 1k68_A Phytochrome response re 45.6 71 0.0024 22.0 9.5 57 7-63 31-99 (140)
231 1dos_A Aldolase class II; lyas 44.9 39 0.0013 30.2 6.2 51 6-57 10-61 (358)
232 2dqw_A Dihydropteroate synthas 44.8 34 0.0011 29.8 5.6 52 26-84 104-155 (294)
233 1r0k_A 1-deoxy-D-xylulose 5-ph 44.4 21 0.00073 32.3 4.4 67 26-94 94-160 (388)
234 2raf_A Putative dinucleotide-b 44.2 39 0.0013 26.9 5.6 53 25-80 57-124 (209)
235 3qc0_A Sugar isomerase; TIM ba 44.1 32 0.0011 27.6 5.1 18 36-53 45-62 (275)
236 2q02_A Putative cytoplasmic pr 44.0 52 0.0018 26.4 6.4 75 36-112 51-142 (272)
237 3elf_A Fructose-bisphosphate a 43.9 29 0.001 31.0 5.2 33 25-57 20-53 (349)
238 1eye_A DHPS 1, dihydropteroate 43.8 30 0.001 29.8 5.0 51 27-83 82-132 (280)
239 2yc2_C IFT27, small RAB-relate 43.7 1E+02 0.0034 23.1 7.9 67 25-91 96-182 (208)
240 3v7e_A Ribosome-associated pro 43.6 33 0.0011 23.8 4.4 42 42-83 20-61 (82)
241 1y8q_B Anthracycline-, ubiquit 43.3 27 0.00092 33.7 5.1 35 25-59 108-144 (640)
242 3n0w_A ABC branched chain amin 43.0 1.1E+02 0.0037 25.7 8.5 44 25-68 197-243 (379)
243 3d02_A Putative LACI-type tran 42.9 97 0.0033 24.9 8.0 32 25-56 61-93 (303)
244 1ofu_X SULA, hypothetical prot 42.8 75 0.0026 23.7 6.6 53 28-80 61-115 (119)
245 1txg_A Glycerol-3-phosphate de 42.8 29 0.001 29.1 4.8 73 8-86 58-142 (335)
246 3vzx_A Heptaprenylglyceryl pho 42.8 32 0.0011 28.8 5.0 44 41-84 23-68 (228)
247 3jug_A Beta-mannanase; TIM-bar 42.7 30 0.001 30.4 5.0 47 33-79 219-269 (345)
248 2ioy_A Periplasmic sugar-bindi 42.5 1E+02 0.0036 24.6 8.1 32 24-55 56-88 (283)
249 2vp8_A Dihydropteroate synthas 42.3 37 0.0013 29.9 5.5 49 28-83 120-168 (318)
250 2rir_A Dipicolinate synthase, 42.0 30 0.001 29.2 4.8 68 11-88 207-274 (300)
251 1knx_A Probable HPR(Ser) kinas 41.8 21 0.00071 31.3 3.8 92 39-132 73-170 (312)
252 3dcm_X AdoMet, uncharacterized 41.7 13 0.00045 30.5 2.3 12 47-58 102-113 (192)
253 2lbw_A H/ACA ribonucleoprotein 41.7 62 0.0021 24.0 6.0 42 41-82 28-70 (121)
254 3o74_A Fructose transport syst 41.7 51 0.0017 26.1 5.9 33 25-57 58-90 (272)
255 3eod_A Protein HNR; response r 41.6 82 0.0028 21.6 6.5 54 8-62 35-92 (130)
256 2f9f_A First mannosyl transfer 41.6 58 0.002 24.5 6.0 55 13-80 91-145 (177)
257 3gg2_A Sugar dehydrogenase, UD 41.5 96 0.0033 28.0 8.4 77 7-90 66-163 (450)
258 3hl2_A O-phosphoseryl-tRNA(SEC 41.0 30 0.001 32.5 4.9 48 35-82 202-253 (501)
259 2q5c_A NTRC family transcripti 40.6 79 0.0027 25.2 6.9 55 26-88 118-175 (196)
260 3uug_A Multiple sugar-binding 40.6 1E+02 0.0036 25.1 7.9 33 25-57 59-92 (330)
261 3tb6_A Arabinose metabolism tr 40.5 1.3E+02 0.0045 23.8 8.4 33 25-57 71-107 (298)
262 1w41_A 50S ribosomal protein L 40.2 72 0.0025 22.6 6.0 10 43-52 52-61 (101)
263 3eaq_A Heat resistant RNA depe 40.1 1.1E+02 0.0039 24.0 7.8 59 26-84 32-90 (212)
264 3ilh_A Two component response 39.5 55 0.0019 22.9 5.3 53 9-61 40-104 (146)
265 1bqc_A Protein (beta-mannanase 39.4 40 0.0014 28.1 5.1 51 28-78 191-251 (302)
266 3l46_A Protein ECT2; alternati 39.4 13 0.00046 27.6 1.9 30 52-83 25-54 (112)
267 3can_A Pyruvate-formate lyase- 39.3 50 0.0017 25.3 5.4 36 34-69 17-53 (182)
268 1pgj_A 6PGDH, 6-PGDH, 6-phosph 39.3 77 0.0026 28.9 7.4 75 7-85 53-131 (478)
269 2l2q_A PTS system, cellobiose- 39.1 81 0.0028 22.6 6.2 67 12-88 23-89 (109)
270 3mfq_A TROA, high-affinity zin 39.1 44 0.0015 28.3 5.4 41 44-85 176-223 (282)
271 3iz5_f 60S ribosomal protein L 38.9 94 0.0032 22.9 6.6 19 36-55 12-30 (112)
272 2ka5_A Putative anti-sigma fac 38.9 1.1E+02 0.0037 22.1 7.7 34 26-61 53-94 (125)
273 1ytl_A Acetyl-COA decarboxylas 38.6 58 0.002 25.9 5.7 38 42-81 29-67 (174)
274 3hly_A Flavodoxin-like domain; 38.6 30 0.001 26.4 3.9 7 29-35 34-40 (161)
275 2fvy_A D-galactose-binding per 38.5 1.5E+02 0.0052 23.7 8.7 68 25-98 59-127 (309)
276 2vef_A Dihydropteroate synthas 38.5 38 0.0013 29.6 4.9 51 27-83 87-137 (314)
277 2y0c_A BCEC, UDP-glucose dehyd 38.4 1.1E+02 0.0036 28.0 8.2 72 7-85 72-164 (478)
278 3c85_A Putative glutathione-re 38.3 1.3E+02 0.0043 22.7 8.1 71 24-99 104-176 (183)
279 3gv0_A Transcriptional regulat 38.2 57 0.002 26.3 5.8 30 25-55 66-95 (288)
280 1n2z_A Vitamin B12 transport p 37.9 59 0.002 26.0 5.8 55 11-71 48-102 (245)
281 3dx5_A Uncharacterized protein 37.7 60 0.0021 26.3 5.9 23 195-217 260-282 (286)
282 3h8v_A Ubiquitin-like modifier 37.6 34 0.0012 29.5 4.5 30 25-54 137-167 (292)
283 4ezb_A Uncharacterized conserv 37.5 1.1E+02 0.0038 25.9 7.8 61 12-78 80-142 (317)
284 1k66_A Phytochrome response re 37.5 1E+02 0.0035 21.4 8.4 56 7-62 35-105 (149)
285 3heb_A Response regulator rece 37.1 1.1E+02 0.0038 21.7 8.9 90 7-102 33-136 (152)
286 2bfw_A GLGA glycogen synthase; 36.9 40 0.0014 25.5 4.4 58 12-83 108-165 (200)
287 3tr9_A Dihydropteroate synthas 36.9 43 0.0015 29.4 5.0 51 27-84 107-157 (314)
288 3nxk_A Cytoplasmic L-asparagin 36.8 89 0.003 27.5 7.1 63 25-88 220-287 (334)
289 3cpq_A 50S ribosomal protein L 36.5 70 0.0024 23.2 5.5 20 35-54 49-68 (110)
290 4hn9_A Iron complex transport 36.5 70 0.0024 27.1 6.3 38 11-56 107-144 (335)
291 1eye_A DHPS 1, dihydropteroate 36.4 52 0.0018 28.3 5.4 73 13-90 93-186 (280)
292 3h5i_A Response regulator/sens 36.3 34 0.0012 24.3 3.7 55 7-61 32-90 (140)
293 3u4g_A NAMN:DMB phosphoribosyl 36.0 6.7 0.00023 35.1 -0.4 59 27-85 223-284 (337)
294 3usb_A Inosine-5'-monophosphat 36.0 1.2E+02 0.0042 27.9 8.3 38 25-63 268-310 (511)
295 3w01_A Heptaprenylglyceryl pho 35.9 61 0.0021 27.3 5.6 40 41-80 28-69 (235)
296 3kht_A Response regulator; PSI 35.6 1.1E+02 0.0039 21.4 9.8 56 7-63 34-95 (144)
297 3k9c_A Transcriptional regulat 35.5 74 0.0025 25.7 6.1 56 27-82 16-74 (289)
298 2qvg_A Two component response 35.5 88 0.003 21.8 5.9 55 7-61 36-101 (143)
299 2fn9_A Ribose ABC transporter, 35.5 1.5E+02 0.0051 23.6 7.9 31 25-55 58-89 (290)
300 3tr9_A Dihydropteroate synthas 35.4 53 0.0018 28.9 5.4 60 25-85 125-203 (314)
301 2nte_A BARD-1, BRCA1-associate 35.4 16 0.00054 29.3 1.9 33 51-85 2-34 (210)
302 3hdv_A Response regulator; PSI 35.2 59 0.002 22.6 4.9 51 10-60 37-92 (136)
303 2whl_A Beta-mannanase, baman5; 34.9 50 0.0017 27.5 5.0 44 34-77 197-242 (294)
304 4e21_A 6-phosphogluconate dehy 34.8 1.4E+02 0.0049 26.0 8.2 72 6-81 65-139 (358)
305 1ydn_A Hydroxymethylglutaryl-C 34.7 89 0.003 26.3 6.6 76 36-113 120-208 (295)
306 2aif_A Ribosomal protein L7A; 34.7 59 0.002 24.7 5.0 19 36-55 27-45 (135)
307 4djd_D C/Fe-SP, corrinoid/iron 34.5 59 0.002 28.6 5.5 68 28-101 132-204 (323)
308 3egc_A Putative ribose operon 34.4 60 0.002 26.1 5.3 14 193-206 196-209 (291)
309 1vli_A Spore coat polysacchari 34.4 1.1E+02 0.0039 27.5 7.5 72 35-109 100-192 (385)
310 2vk2_A YTFQ, ABC transporter p 34.4 1.3E+02 0.0044 24.4 7.4 31 25-55 58-89 (306)
311 3md9_A Hemin-binding periplasm 34.3 1.4E+02 0.0047 23.9 7.5 40 11-56 50-89 (255)
312 1vq8_F 50S ribosomal protein L 34.2 53 0.0018 24.3 4.5 25 30-55 5-33 (120)
313 3kcn_A Adenylate cyclase homol 34.2 61 0.0021 23.2 4.9 51 7-57 30-84 (151)
314 1tjy_A Sugar transport protein 34.0 1.2E+02 0.0041 24.9 7.3 32 24-55 59-91 (316)
315 3tva_A Xylose isomerase domain 34.0 72 0.0025 25.9 5.8 47 36-82 102-159 (290)
316 1tx2_A DHPS, dihydropteroate s 33.9 60 0.0021 28.1 5.5 67 25-91 135-214 (297)
317 3cnb_A DNA-binding response re 33.8 1.2E+02 0.004 21.0 8.6 51 9-60 39-95 (143)
318 2rb4_A ATP-dependent RNA helic 33.6 1.5E+02 0.0052 22.2 7.8 58 27-84 36-93 (175)
319 1z7d_A Ornithine aminotransfer 33.6 46 0.0016 29.2 4.8 48 30-80 196-251 (433)
320 3sm9_A Mglur3, metabotropic gl 33.6 62 0.0021 29.0 5.7 39 24-62 242-281 (479)
321 4pga_A Glutaminase-asparaginas 33.5 63 0.0021 28.5 5.6 63 25-88 221-288 (337)
322 3h1g_A Chemotaxis protein CHEY 33.5 96 0.0033 21.4 5.8 51 10-60 36-92 (129)
323 1f0k_A MURG, UDP-N-acetylgluco 33.4 1E+02 0.0034 25.5 6.7 62 11-83 246-308 (364)
324 2fiq_A Putative tagatose 6-pho 33.3 44 0.0015 30.6 4.7 52 29-80 18-84 (420)
325 4e7p_A Response regulator; DNA 33.3 1.2E+02 0.0041 21.6 6.4 55 7-62 49-107 (150)
326 2hjv_A ATP-dependent RNA helic 33.2 1.5E+02 0.0051 22.0 8.0 59 26-84 36-94 (163)
327 2wjg_A FEOB, ferrous iron tran 33.1 65 0.0022 23.9 5.0 57 26-82 86-149 (188)
328 4e12_A Diketoreductase; oxidor 33.0 73 0.0025 26.4 5.7 52 7-64 73-129 (283)
329 2ph5_A Homospermidine synthase 33.0 27 0.00093 32.6 3.2 64 26-91 84-165 (480)
330 3snr_A Extracellular ligand-bi 32.9 65 0.0022 26.5 5.4 41 25-66 190-232 (362)
331 3epr_A Hydrolase, haloacid deh 32.9 65 0.0022 25.8 5.3 50 37-89 25-80 (264)
332 3kto_A Response regulator rece 32.7 1.2E+02 0.0043 21.0 10.0 77 6-87 32-114 (136)
333 1oft_A SULA, hypothetical prot 32.7 1.5E+02 0.005 23.5 7.1 53 28-80 103-157 (161)
334 3jrn_A AT1G72930 protein; TIR 32.4 57 0.0019 26.1 4.7 75 24-98 7-88 (176)
335 3g0o_A 3-hydroxyisobutyrate de 32.4 57 0.0019 27.3 5.0 67 10-83 55-128 (303)
336 1l0b_A BRCA1; TANDEM-BRCT, thr 32.2 18 0.00061 29.1 1.7 34 49-84 5-38 (229)
337 2xzm_U Ribosomal protein L7AE 31.9 1E+02 0.0035 23.2 5.9 47 37-83 28-75 (126)
338 1q77_A Hypothetical protein AQ 31.9 37 0.0013 24.2 3.3 51 25-82 87-138 (138)
339 3brs_A Periplasmic binding pro 31.9 92 0.0032 24.8 6.0 31 25-55 65-96 (289)
340 2fc3_A 50S ribosomal protein L 31.8 53 0.0018 24.4 4.2 10 43-52 65-74 (124)
341 2p6n_A ATP-dependent RNA helic 31.8 1.8E+02 0.0061 22.5 8.4 58 26-83 55-112 (191)
342 3mvn_A UDP-N-acetylmuramate:L- 31.6 85 0.0029 23.9 5.5 59 25-83 36-102 (163)
343 7a3h_A Endoglucanase; hydrolas 31.5 59 0.002 27.3 5.0 34 28-61 195-233 (303)
344 1usg_A Leucine-specific bindin 31.4 70 0.0024 26.2 5.3 39 25-63 193-232 (346)
345 1jw9_B Molybdopterin biosynthe 31.4 45 0.0015 27.6 4.1 36 49-85 121-156 (249)
346 3k4h_A Putative transcriptiona 31.4 1.3E+02 0.0044 23.9 6.9 33 24-57 68-100 (292)
347 1yx1_A Hypothetical protein PA 31.4 54 0.0019 26.5 4.6 45 36-80 84-130 (264)
348 4es6_A Uroporphyrinogen-III sy 31.3 1.1E+02 0.0038 24.8 6.5 56 25-89 185-246 (254)
349 3a1s_A Iron(II) transport prot 31.0 51 0.0017 27.2 4.4 71 25-95 83-161 (258)
350 1i60_A IOLI protein; beta barr 31.0 92 0.0032 24.8 5.9 18 36-53 46-63 (278)
351 3cin_A MYO-inositol-1-phosphat 30.9 69 0.0024 29.1 5.5 47 47-95 186-232 (394)
352 1v77_A PH1877P, hypothetical p 30.8 47 0.0016 26.8 4.0 50 26-80 76-129 (212)
353 1xbi_A 50S ribosomal protein L 30.8 55 0.0019 24.3 4.1 12 41-52 64-75 (120)
354 1zud_1 Adenylyltransferase THI 30.6 42 0.0014 27.8 3.7 35 49-84 118-152 (251)
355 1v77_A PH1877P, hypothetical p 30.5 85 0.0029 25.3 5.6 44 39-82 114-167 (212)
356 1im4_A DBH; DNA polymerase PAL 30.5 40 0.0014 27.6 3.6 101 28-131 9-136 (221)
357 2x7j_A 2-succinyl-5-enolpyruvy 30.4 72 0.0024 29.7 5.7 49 34-82 229-277 (604)
358 1sqs_A Conserved hypothetical 30.4 42 0.0014 27.2 3.7 64 11-77 68-147 (242)
359 3dbi_A Sugar-binding transcrip 30.3 1.7E+02 0.0058 24.1 7.6 18 39-56 109-126 (338)
360 3kws_A Putative sugar isomeras 30.0 1.2E+02 0.004 24.6 6.4 23 37-59 105-127 (287)
361 1rvg_A Fructose-1,6-bisphospha 30.0 57 0.002 28.5 4.6 55 25-80 16-77 (305)
362 3gmi_A UPF0348 protein MJ0951; 29.9 2.6E+02 0.0089 24.8 9.1 100 25-131 113-238 (357)
363 1aj0_A DHPS, dihydropteroate s 29.9 81 0.0028 27.0 5.6 66 25-91 110-195 (282)
364 3snk_A Response regulator CHEY 29.9 56 0.0019 22.9 3.9 55 6-61 41-99 (135)
365 2oat_A Ornithine aminotransfer 29.8 47 0.0016 29.2 4.2 49 29-80 206-262 (439)
366 3nkl_A UDP-D-quinovosamine 4-d 29.6 1.2E+02 0.0039 21.9 5.8 45 41-85 57-102 (141)
367 3e48_A Putative nucleoside-dip 29.6 1.1E+02 0.0038 24.6 6.2 30 25-54 65-102 (289)
368 2hk0_A D-psicose 3-epimerase; 29.5 1.3E+02 0.0044 24.7 6.7 22 36-57 107-128 (309)
369 2hmt_A YUAA protein; RCK, KTN, 29.5 1.5E+02 0.005 20.8 9.0 67 25-96 70-138 (144)
370 2yvq_A Carbamoyl-phosphate syn 29.4 90 0.0031 23.7 5.2 41 41-81 88-131 (143)
371 2fg5_A RAB-22B, RAS-related pr 29.3 1.3E+02 0.0046 22.5 6.3 67 25-91 95-176 (192)
372 3m6m_D Sensory/regulatory prot 29.3 87 0.003 22.3 5.0 54 8-62 42-103 (143)
373 3g8r_A Probable spore coat pol 29.2 68 0.0023 28.6 5.1 50 34-85 76-145 (350)
374 3psh_A Protein HI_1472; substr 29.0 1.4E+02 0.0049 24.8 7.0 41 10-57 74-114 (326)
375 3ozi_A L6TR; plant TIR domain, 28.9 1.9E+02 0.0066 23.6 7.5 75 24-98 34-115 (204)
376 3i8s_A Ferrous iron transport 28.8 75 0.0026 26.3 5.1 69 25-93 85-161 (274)
377 2h9a_A Carbon monoxide dehydro 28.5 2E+02 0.0069 26.3 8.2 68 26-101 128-199 (445)
378 2pju_A Propionate catabolism o 28.2 2.5E+02 0.0084 23.0 9.9 49 26-82 130-179 (225)
379 1rlg_A 50S ribosomal protein L 28.1 51 0.0017 24.3 3.5 9 43-51 64-72 (119)
380 3b1f_A Putative prephenate deh 28.1 1.4E+02 0.0048 24.4 6.7 56 10-71 57-115 (290)
381 3clv_A RAB5 protein, putative; 28.1 1.8E+02 0.006 21.3 8.0 75 25-99 116-203 (208)
382 3bc1_A RAS-related protein RAB 28.0 1.4E+02 0.0049 21.7 6.2 67 25-91 93-175 (195)
383 3rxy_A NIF3 protein; structura 28.0 2.7E+02 0.0093 24.0 8.5 74 28-110 198-275 (278)
384 1i3c_A Response regulator RCP1 27.8 1.6E+02 0.0056 20.8 9.8 56 7-62 37-104 (149)
385 1k77_A EC1530, hypothetical pr 27.8 1.4E+02 0.0047 23.6 6.4 24 37-60 86-109 (260)
386 2ki0_A DS119; beta-alpha-beta, 27.7 29 0.001 20.4 1.6 21 58-78 11-31 (36)
387 3hv2_A Response regulator/HD d 27.6 1.3E+02 0.0043 21.5 5.7 49 8-57 42-94 (153)
388 1dp4_A Atrial natriuretic pept 27.5 1.1E+02 0.0037 26.2 6.0 49 12-62 195-247 (435)
389 2isw_A Putative fructose-1,6-b 27.4 64 0.0022 28.5 4.5 56 25-80 17-80 (323)
390 3o85_A Ribosomal protein L7AE; 27.4 77 0.0026 23.6 4.4 17 38-55 19-35 (122)
391 4fo4_A Inosine 5'-monophosphat 27.3 1.2E+02 0.0041 26.9 6.4 43 25-68 120-167 (366)
392 4dad_A Putative pilus assembly 27.3 1.6E+02 0.0055 20.6 7.0 77 7-87 48-129 (146)
393 3lq1_A 2-succinyl-5-enolpyruvy 27.3 44 0.0015 31.0 3.7 48 35-83 211-258 (578)
394 3lop_A Substrate binding perip 27.2 1.5E+02 0.0051 24.5 6.8 40 25-64 196-236 (364)
395 2yci_X 5-methyltetrahydrofolat 27.1 1.7E+02 0.0058 24.8 7.1 90 25-114 100-209 (271)
396 2q8p_A Iron-regulated surface 27.1 1.5E+02 0.005 23.7 6.5 39 10-55 50-88 (260)
397 4hyl_A Stage II sporulation pr 27.1 1.4E+02 0.0047 20.9 5.7 33 27-61 44-84 (117)
398 2e4u_A Metabotropic glutamate 27.1 80 0.0027 28.7 5.3 39 24-62 243-282 (555)
399 2h9a_B CO dehydrogenase/acetyl 27.0 1.5E+02 0.0051 25.8 6.8 68 13-87 140-214 (310)
400 3c7a_A Octopine dehydrogenase; 27.0 68 0.0023 27.9 4.7 54 9-68 72-130 (404)
401 2kln_A Probable sulphate-trans 26.8 95 0.0032 22.4 4.8 17 31-47 26-42 (130)
402 1tv8_A MOAA, molybdenum cofact 26.8 1E+02 0.0035 26.0 5.7 23 27-50 98-120 (340)
403 1yqg_A Pyrroline-5-carboxylate 26.7 55 0.0019 26.4 3.8 44 25-71 57-100 (263)
404 1gud_A ALBP, D-allose-binding 26.7 2.4E+02 0.0083 22.5 8.2 33 25-57 59-92 (288)
405 3dmy_A Protein FDRA; predicted 26.6 51 0.0018 30.6 3.9 69 15-83 318-402 (480)
406 3dm5_A SRP54, signal recogniti 26.5 2.8E+02 0.0096 25.2 8.9 72 39-110 118-190 (443)
407 2iw1_A Lipopolysaccharide core 26.5 60 0.002 26.8 4.0 58 11-81 262-319 (374)
408 2yyy_A Glyceraldehyde-3-phosph 26.4 36 0.0012 30.0 2.7 34 25-59 81-115 (343)
409 1t15_A Breast cancer type 1 su 26.4 23 0.00078 28.0 1.3 33 50-84 3-35 (214)
410 1f0y_A HCDH, L-3-hydroxyacyl-C 26.4 55 0.0019 27.4 3.8 51 7-63 88-143 (302)
411 2jjm_A Glycosyl transferase, g 26.3 61 0.0021 27.3 4.1 60 11-83 276-335 (394)
412 2vns_A Metalloreductase steap3 26.3 1E+02 0.0034 24.4 5.3 69 6-84 71-148 (215)
413 2zay_A Response regulator rece 26.2 1.7E+02 0.0057 20.4 8.1 50 10-60 38-93 (147)
414 4eyg_A Twin-arginine transloca 26.2 82 0.0028 26.1 4.9 82 13-102 187-273 (368)
415 3piu_A 1-aminocyclopropane-1-c 26.1 1.5E+02 0.0052 25.4 6.8 22 59-80 208-229 (435)
416 3d8u_A PURR transcriptional re 26.1 92 0.0031 24.6 5.0 29 25-55 59-88 (275)
417 3hdg_A Uncharacterized protein 26.0 1.2E+02 0.0042 20.9 5.2 12 25-36 51-63 (137)
418 3nhm_A Response regulator; pro 26.0 90 0.0031 21.4 4.4 50 7-57 30-85 (133)
419 2qsj_A DNA-binding response re 26.0 76 0.0026 22.6 4.1 8 75-82 78-85 (154)
420 4evq_A Putative ABC transporte 25.9 1E+02 0.0036 25.5 5.5 46 25-71 206-253 (375)
421 3qhp_A Type 1 capsular polysac 25.9 39 0.0013 24.7 2.5 38 11-54 66-104 (166)
422 1pq4_A Periplasmic binding pro 25.8 1E+02 0.0035 26.0 5.5 40 45-85 204-248 (291)
423 1fuk_A Eukaryotic initiation f 25.7 2E+02 0.007 21.2 7.5 59 26-84 31-89 (165)
424 2dri_A D-ribose-binding protei 25.7 2.1E+02 0.0073 22.5 7.2 32 24-55 56-88 (271)
425 3ks9_A Mglur1, metabotropic gl 25.6 86 0.0029 28.2 5.2 38 25-62 256-296 (496)
426 3i32_A Heat resistant RNA depe 25.4 2.5E+02 0.0085 23.7 7.9 60 25-84 28-87 (300)
427 3ha2_A NADPH-quinone reductase 25.3 36 0.0012 27.0 2.3 88 25-112 51-174 (177)
428 1ub0_A THID, phosphomethylpyri 25.1 1.7E+02 0.0058 23.3 6.6 55 30-85 50-107 (258)
429 3eya_A Pyruvate dehydrogenase 25.1 85 0.0029 28.8 5.1 52 35-88 188-239 (549)
430 2i4r_A V-type ATP synthase sub 25.1 71 0.0024 23.2 3.7 56 25-80 28-84 (102)
431 1sbo_A Putative anti-sigma fac 25.1 1.3E+02 0.0043 20.4 5.0 16 39-54 66-81 (110)
432 3mq4_A Mglur7, metabotropic gl 25.0 29 0.00098 31.1 1.8 50 12-61 234-286 (481)
433 3bq0_A POL IV, DBH, DNA polyme 25.0 55 0.0019 28.4 3.7 54 77-131 71-131 (354)
434 1ybh_A Acetolactate synthase, 25.0 74 0.0025 29.5 4.8 47 35-82 201-247 (590)
435 3op7_A Aminotransferase class 25.0 86 0.0029 26.2 4.8 13 64-76 176-188 (375)
436 3l2b_A Probable manganase-depe 25.0 1.1E+02 0.0037 24.3 5.2 47 39-87 130-176 (245)
437 4dgh_A Sulfate permease family 24.7 1.8E+02 0.006 20.9 6.0 33 27-61 51-91 (130)
438 3gbv_A Putative LACI-family tr 24.6 1.9E+02 0.0064 23.0 6.7 56 25-81 40-100 (304)
439 3eaf_A ABC transporter, substr 24.6 2E+02 0.0068 24.1 7.2 78 23-101 74-169 (391)
440 4huj_A Uncharacterized protein 24.5 94 0.0032 24.7 4.8 59 25-85 81-152 (220)
441 3fvv_A Uncharacterized protein 24.5 88 0.003 24.0 4.5 22 38-59 97-118 (232)
442 3n9r_A Fructose-bisphosphate a 24.5 70 0.0024 28.0 4.2 56 25-80 16-79 (307)
443 3tg2_A Vibriobactin-specific i 24.5 2.7E+02 0.0094 22.5 7.7 59 9-71 125-189 (223)
444 3sz8_A 2-dehydro-3-deoxyphosph 24.4 1.3E+02 0.0045 25.9 5.9 30 36-67 78-107 (285)
445 2r7a_A Bacterial heme binding 24.4 2.1E+02 0.0071 22.7 6.9 39 11-55 50-88 (256)
446 1t5i_A C_terminal domain of A 24.4 2.3E+02 0.0078 21.3 8.0 58 27-84 33-90 (172)
447 3keo_A Redox-sensing transcrip 24.3 1.2E+02 0.004 24.9 5.3 49 5-57 130-180 (212)
448 2hbv_A 2-amino-3-carboxymucona 24.3 2.1E+02 0.0072 23.9 7.2 54 30-83 121-179 (334)
449 1usg_A Leucine-specific bindin 24.3 2.2E+02 0.0076 23.0 7.2 24 33-56 53-76 (346)
450 2qma_A Diaminobutyrate-pyruvat 24.3 1.2E+02 0.0042 26.9 5.9 54 34-88 241-301 (497)
451 2qzj_A Two-component response 24.2 1.8E+02 0.0063 20.2 8.4 53 8-61 32-87 (136)
452 2wji_A Ferrous iron transport 24.2 87 0.003 23.0 4.3 65 25-89 81-153 (165)
453 3p9z_A Uroporphyrinogen III co 24.2 1.7E+02 0.0059 23.4 6.4 57 24-89 160-217 (229)
454 3re1_A Uroporphyrinogen-III sy 24.1 1.1E+02 0.0037 25.2 5.2 55 25-88 193-253 (269)
455 3jte_A Response regulator rece 24.0 1.8E+02 0.0063 20.1 8.4 55 7-61 30-89 (143)
456 1z2a_A RAS-related protein RAB 23.9 1.6E+02 0.0054 20.9 5.6 58 25-82 77-147 (168)
457 3gt7_A Sensor protein; structu 23.9 2E+02 0.0068 20.5 10.0 54 7-61 34-93 (154)
458 3c48_A Predicted glycosyltrans 23.8 88 0.003 26.6 4.7 59 12-83 318-376 (438)
459 2lpm_A Two-component response 23.8 39 0.0013 25.0 2.1 51 10-62 39-91 (123)
460 1lss_A TRK system potassium up 23.7 1.9E+02 0.0064 20.1 7.7 65 24-94 68-134 (140)
461 1vrd_A Inosine-5'-monophosphat 23.7 1.7E+02 0.0058 26.4 6.9 38 25-63 249-291 (494)
462 2dqw_A Dihydropteroate synthas 23.7 1.1E+02 0.0039 26.4 5.3 113 13-131 116-262 (294)
463 3khj_A Inosine-5-monophosphate 23.7 1.3E+02 0.0043 26.6 5.8 16 39-54 107-122 (361)
464 1egz_A Endoglucanase Z, EGZ, C 23.6 1.4E+02 0.0049 24.4 5.9 33 28-60 187-224 (291)
465 1mv8_A GMD, GDP-mannose 6-dehy 23.6 1.9E+02 0.0065 25.6 7.1 72 7-85 64-159 (436)
466 3cg4_A Response regulator rece 23.6 94 0.0032 21.6 4.2 50 9-59 36-91 (142)
467 3gl9_A Response regulator; bet 23.6 1.8E+02 0.0061 19.8 8.0 54 7-61 29-88 (122)
468 1ly1_A Polynucleotide kinase; 23.5 1.5E+02 0.005 21.7 5.5 38 40-77 66-106 (181)
469 1vhc_A Putative KHG/KDPG aldol 23.5 1.9E+02 0.0065 23.6 6.6 20 36-55 97-116 (224)
470 3cg0_A Response regulator rece 23.4 1.8E+02 0.0063 19.9 8.1 51 10-61 40-94 (140)
471 2r79_A Periplasmic binding pro 23.4 2.7E+02 0.0091 22.6 7.5 40 10-55 49-88 (283)
472 1xky_A Dihydrodipicolinate syn 23.4 1.5E+02 0.005 25.3 6.0 46 35-80 32-86 (301)
473 4gj1_A 1-(5-phosphoribosyl)-5- 23.4 1.5E+02 0.0051 24.4 5.9 45 38-84 153-205 (243)
474 3nra_A Aspartate aminotransfer 23.3 1.3E+02 0.0046 25.1 5.8 10 79-88 185-194 (407)
475 2epj_A Glutamate-1-semialdehyd 23.2 1.2E+02 0.0042 26.1 5.6 51 29-80 184-242 (434)
476 3zvl_A Bifunctional polynucleo 23.2 1.4E+02 0.0049 26.3 6.1 42 35-76 295-336 (416)
477 2p5t_B PEZT; postsegregational 23.2 1.8E+02 0.0062 23.4 6.4 40 39-78 99-138 (253)
478 2dpo_A L-gulonate 3-dehydrogen 23.1 62 0.0021 27.9 3.6 51 7-63 75-130 (319)
479 3tsh_A Pollen allergen PHL P 4 23.0 1.1E+02 0.0038 27.8 5.5 36 24-59 51-86 (500)
480 4avf_A Inosine-5'-monophosphat 23.0 2.7E+02 0.0092 25.4 8.1 79 13-96 234-353 (490)
481 2fep_A Catabolite control prot 23.0 2.9E+02 0.0099 22.0 8.4 30 25-55 72-101 (289)
482 3dcm_X AdoMet, uncharacterized 23.0 1.2E+02 0.0041 24.7 5.1 56 7-63 85-150 (192)
483 1agx_A Glutaminase-asparaginas 23.0 1.1E+02 0.0037 26.8 5.1 64 25-88 215-282 (331)
484 3qk7_A Transcriptional regulat 22.8 2.9E+02 0.01 22.0 7.8 32 25-57 65-96 (294)
485 1xpj_A Hypothetical protein; s 22.8 1E+02 0.0034 22.3 4.3 24 34-57 25-48 (126)
486 3hcw_A Maltose operon transcri 22.7 2.2E+02 0.0074 22.9 6.8 30 25-55 68-97 (295)
487 1wky_A Endo-beta-1,4-mannanase 22.7 94 0.0032 28.2 4.8 46 34-79 205-254 (464)
488 2rgy_A Transcriptional regulat 22.5 2.7E+02 0.0091 22.2 7.3 15 40-54 81-95 (290)
489 2etv_A Iron(III) ABC transport 22.5 88 0.003 26.7 4.5 40 11-57 87-126 (346)
490 3n0x_A Possible substrate bind 22.4 1.7E+02 0.0059 24.5 6.3 31 25-55 73-103 (374)
491 3e96_A Dihydrodipicolinate syn 22.4 95 0.0033 26.7 4.6 29 47-76 79-107 (316)
492 2dt5_A AT-rich DNA-binding pro 22.4 1.2E+02 0.0041 24.6 5.0 71 10-95 130-200 (211)
493 1ydn_A Hydroxymethylglutaryl-C 22.2 1.1E+02 0.0039 25.6 5.0 51 32-83 23-81 (295)
494 3mm4_A Histidine kinase homolo 22.2 1.6E+02 0.0056 22.6 5.7 33 25-57 119-159 (206)
495 1xti_A Probable ATP-dependent 22.2 3.2E+02 0.011 22.6 8.0 59 26-84 251-309 (391)
496 3a5f_A Dihydrodipicolinate syn 22.1 1.6E+02 0.0055 24.8 6.0 80 47-127 68-153 (291)
497 1tq8_A Hypothetical protein RV 22.0 1.8E+02 0.006 21.6 5.7 55 27-83 99-158 (163)
498 4feg_A Pyruvate oxidase; carba 21.9 86 0.0029 29.2 4.5 47 35-82 199-245 (603)
499 2ojp_A DHDPS, dihydrodipicolin 21.9 1.7E+02 0.0058 24.7 6.1 46 36-81 57-102 (292)
500 3cz5_A Two-component response 21.9 2E+02 0.007 20.2 5.9 61 9-70 36-100 (153)
No 1
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=100.00 E-value=1.5e-69 Score=482.12 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=187.4
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++|+++++|+++++. ++||+||||.|+++.+++++|+++|+|+|+|||||+++++++|+++| +++|+|||||
T Consensus 73 ~~gv~v~~dl~~ll~------~aDVvIDFT~p~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa--~~~~~~~a~N 144 (288)
T 3ijp_A 73 FLGVRITDDPESAFS------NTEGILDFSQPQASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFA--KYTTIVKSGN 144 (288)
T ss_dssp CCSCBCBSCHHHHTT------SCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHH--TTSEEEECSC
T ss_pred cCCceeeCCHHHHhc------CCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh--CcCCEEEECC
Confidence 579999999999986 69999999999999999999999999999999999999999999999 5599999999
Q ss_pred hhHHHHHHHHHHHHHhhhc---CCeEEEecCCC-CCCCCcHHHHHHHHHHHhcC-------cccCCCccccccccccccC
Q 027747 84 LSIGSILLQQAAISASFHY---KNVEIVESRPN-ARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVL 152 (219)
Q Consensus 84 fSlGv~ll~~~~~~aa~~~---~dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~-------~~~~~~~~~~~~~~r~~~~ 152 (219)
||+|+|||+++++.+|++| ||+||+|+||+ |+|||||||++|++.|++.+ .+|+|++.. ++|
T Consensus 145 ~SiGv~ll~~l~~~aa~~l~~~~dieIiE~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~---g~r---- 217 (288)
T 3ijp_A 145 MSLGVNLLANLVKRAAKALDDDFDIEIYEMHHANKVDSPSGTALLLGQAAAEGRNIMLKNVSVNGRSGHT---GKR---- 217 (288)
T ss_dssp CCHHHHHHHHHHHHHHHHSCTTSEEEEEEEECTTCCCSSCHHHHHHHHHHHHHTTSCHHHHEEECGGGCC---SCC----
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCEEEEEccCCCCCCCCCHHHHHHHHHHHHHhCCCccccccccccccc---CCc----
Confidence 9999999999999999998 59999999997 99999999999999998743 346676543 566
Q ss_pred CCCceeEEEEEcCCCceEEEEEEccCCcEEEEEEeecCccccHHHHHHHHHHhhcCCCeeeeccccC
Q 027747 153 GEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 219 (219)
Q Consensus 153 ~~~~i~ihS~R~g~ivg~H~V~f~~~~E~i~i~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL 219 (219)
++++|+|||+|+|+++|+|+|+|++++|+|||+|++.||++||+||++||+|+.++++|+|+|+|||
T Consensus 218 ~~~~i~i~s~R~g~ivg~h~V~f~~~~e~i~i~H~a~sR~~Fa~Ga~~Aa~~l~~~~~g~y~m~dvL 284 (288)
T 3ijp_A 218 EKGTIGFACSRGGTVIGDHSITFAGENERIVLSHIAQERSIFANGALKAALWAKNHENGLYSMLDVL 284 (288)
T ss_dssp CTTCEEEEEEECTTCCEEEEEEEEETTEEEEEEEEECCTHHHHHHHHHHHHHHTTCCSEEECHHHHH
T ss_pred CCCCccEEEEECCCCCEEEEEEecCCCcEEEEEEEeCcHHHHHHHHHHHHHHHhcCCCcEEeHHHHh
Confidence 4589999999999999999999999999999999999999999999999999999999999999986
No 2
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=100.00 E-value=1e-68 Score=473.15 Aligned_cols=199 Identities=18% Similarity=0.244 Sum_probs=186.6
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
|+++++|+++++. .+|||||||.|+++.+++++|+++|+|+|+|||||+++|+++|+++| +++|+|||||||
T Consensus 60 gv~v~~dl~~ll~------~~DVVIDfT~p~a~~~~~~~al~~G~~vVigTTG~s~~~~~~L~~aa--~~~~vv~a~N~s 131 (272)
T 4f3y_A 60 GVALTDDIERVCA------EADYLIDFTLPEGTLVHLDAALRHDVKLVIGTTGFSEPQKAQLRAAG--EKIALVFSANMS 131 (272)
T ss_dssp SCBCBCCHHHHHH------HCSEEEECSCHHHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHT--TTSEEEECSCCC
T ss_pred CceecCCHHHHhc------CCCEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh--ccCCEEEECCCC
Confidence 7899999999997 59999999999999999999999999999999999999999999999 569999999999
Q ss_pred HHHHHHHHHHHHHhhhc---CCeEEEecCCC-CCCCCcHHHHHHHHHHHhcC-------cccCCCccccccccccccCCC
Q 027747 86 IGSILLQQAAISASFHY---KNVEIVESRPN-ARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVLGE 154 (219)
Q Consensus 86 lGv~ll~~~~~~aa~~~---~dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~-------~~~~~~~~~~~~~~r~~~~~~ 154 (219)
+|+|||+++++.+|++| ||+||+|+||+ |+|+|||||++|++.|++.+ .+|+|++.. ++| ++
T Consensus 132 ~Gv~l~~~~~~~aa~~l~~~~diei~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~r~g~~---g~r----~~ 204 (272)
T 4f3y_A 132 VGVNVTMKLLEFAAKQFAQGYDIEIIEAHHRHKVDAPSGTALMMGETIAAATGRSLDDCAVYGRHGVT---GER----DP 204 (272)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCEEEEEEEECTTCCSSSCHHHHHHHHHHHHTTTCCHHHHEEECCCSCC---CSC----CT
T ss_pred HHHHHHHHHHHHHHHhcCcCCCEEEEEecCCCCCCCCCHHHHHHHHHHHHHhCccccccccccccccc---CCC----CC
Confidence 99999999999999998 59999999997 99999999999999998753 346777653 567 45
Q ss_pred CceeEEEEEcCCCceEEEEEEccCCcEEEEEEeecCccccHHHHHHHHHHhhcCCCeeeeccccC
Q 027747 155 DGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 219 (219)
Q Consensus 155 ~~i~ihS~R~g~ivg~H~V~f~~~~E~i~i~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL 219 (219)
++|+|||+|+|+++|+|+|+|++++|+|||+|++.||++||+||++||+|+.++++|+|+|+|||
T Consensus 205 ~~i~i~s~R~g~ivg~h~v~f~~~~e~i~i~H~a~~R~~fa~Ga~~Aa~~~~~~~~g~y~m~dvl 269 (272)
T 4f3y_A 205 STIGFSAIRGGDIVGDHTVLFAGIGERIEITHKSASRVSYAQGALRAARFLAGRDAGFFDMQDVL 269 (272)
T ss_dssp TCEEEEEEECTTCCEEEEEEEECSSEEEEEEEEECCTHHHHHHHHHHHHHHHTCSSEEECHHHHT
T ss_pred CccCEEEEECCCCceEEEEEEcCCCcEEEEEEEeCcHHHHHHHHHHHHHHHhcCCCcEEcHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999997
No 3
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=100.00 E-value=4e-68 Score=462.64 Aligned_cols=197 Identities=19% Similarity=0.294 Sum_probs=180.9
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++|+++++|+++++ .+||+||||.|+++.++++ +++|+|+|+|||||+++|+++|+++| +++|+|||||
T Consensus 40 ~~gv~v~~dl~~l~-------~~DVvIDft~p~a~~~~~~--l~~g~~vVigTTG~s~e~~~~l~~aa--~~~~v~~a~N 108 (243)
T 3qy9_A 40 TTPYQQYQHIADVK-------GADVAIDFSNPNLLFPLLD--EDFHLPLVVATTGEKEKLLNKLDELS--QNMPVFFSAN 108 (243)
T ss_dssp -CCSCBCSCTTTCT-------TCSEEEECSCHHHHHHHHT--SCCCCCEEECCCSSHHHHHHHHHHHT--TTSEEEECSS
T ss_pred cCCCceeCCHHHHh-------CCCEEEEeCChHHHHHHHH--HhcCCceEeCCCCCCHHHHHHHHHHH--hcCCEEEECC
Confidence 46889999999886 4899999999999999998 89999999999999999999999999 5599999999
Q ss_pred hhHHHHHHHHHHHHHhhhc--CCeEEEecCCC-CCCCCcHHHHHHHHHHHhcC----cccCCCccccccccccccCCCCc
Q 027747 84 LSIGSILLQQAAISASFHY--KNVEIVESRPN-ARDFPSPDATQIANNLSNLG----QIYNREDISTDVKARGQVLGEDG 156 (219)
Q Consensus 84 fSlGv~ll~~~~~~aa~~~--~dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~----~~~~~~~~~~~~~~r~~~~~~~~ 156 (219)
||+|+|||+++++.+|++| ||+||+|+||+ |+|||||||++|++.|...+ .+|+|++.. ++| ++++
T Consensus 109 ~S~Gv~l~~~~~~~aa~~l~~~dieI~E~HH~~K~DaPSGTA~~la~~i~~~~~~~~~~~~r~~~~---~~r----~~~~ 181 (243)
T 3qy9_A 109 MSYGVHALTKILAAAVPLLDDFDIELTEAHHNKKVDAPSGTLEKLYDVIVSLKENVTPVYDRHELN---EKR----QPQD 181 (243)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCSSSCHHHHHHHHHHHHHSTTCEEECCCTTTC---CCC----CTTE
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCCCCCCCHHHHHHHHHHHhcCccccccccccccc---CCc----cCCc
Confidence 9999999999999999999 89999999997 99999999999999993322 346676543 466 4589
Q ss_pred eeEEEEEcCCCceEEEEEEccCCcEEEEEEeecCccccHHHHHHHHHHhhcCCCeeeecccc
Q 027747 157 VRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKF 218 (219)
Q Consensus 157 i~ihS~R~g~ivg~H~V~f~~~~E~i~i~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dv 218 (219)
|+|||+|+|+++|+|+|+|++++|+|||+|++.||++||+||++||+|+.++++|+|+|+||
T Consensus 182 i~i~s~R~g~ivg~h~v~f~~~~e~i~i~H~a~sR~~Fa~Ga~~Aa~~l~~~~~g~y~m~dv 243 (243)
T 3qy9_A 182 IGIHSIRGGTIVGEHEVLFAGTDETIQITHRAQSKDIFANGAIQAAERLVNKPNGFYTFDNL 243 (243)
T ss_dssp EEEEEEECTTCCEEEEEEEEETTEEEEEEEEESCTHHHHHHHHHHHHHHTTSCSEEECTTTC
T ss_pred ceEEEEECCCCcEEEEEEEcCCCcEEEEEEEeCcHHHHHHHHHHHHHHHccCCCcEeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999997
No 4
>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3
Probab=100.00 E-value=6.3e-68 Score=457.00 Aligned_cols=169 Identities=24% Similarity=0.324 Sum_probs=162.7
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc--
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY-- 102 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~-- 102 (219)
++||+||||+|+++.+|+++|+++|+|+|||||||+++|++.|++++ +++|+|||||||+|+|||+++++.+|++|
T Consensus 53 ~~DVvIDFT~P~a~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a--~~~~vv~apNfSlGvnll~~l~~~aA~~l~~ 130 (228)
T 1vm6_A 53 SPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELS--KEVPVVQAYNFSIGINVLKRFLSELVKVLED 130 (228)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHHTCEEEECCCSCCHHHHHHHHHHT--TTSEEEECSCCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEECCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHHH--hhCCEEEeccccHHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999999999999999999999999998 44999999999999999999999999999
Q ss_pred CCeEEEecCCC-CCCCCcHHHHHHHHHHHhcCcccCCCccccccccccccCCCCceeEEEEEcCCCceEEEEEEccCCcE
Q 027747 103 KNVEIVESRPN-ARDFPSPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHSMVLPGLPSSTTVYFSRPGEV 181 (219)
Q Consensus 103 ~dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~i~ihS~R~g~ivg~H~V~f~~~~E~ 181 (219)
||+||+|+||+ |+|+|||||++|++.|. ++|+|||+|+|+++|+|+|+|++++|+
T Consensus 131 ydiEIiE~HH~~K~DAPSGTAl~lae~i~------------------------~~I~i~svR~g~ivg~H~V~F~~~gE~ 186 (228)
T 1vm6_A 131 WDVEIVETHHRFKKDAPSGTAILLESALG------------------------KSVPIHSLRVGGVPGDHVVVFGNIGET 186 (228)
T ss_dssp SEEEEEEEECTTCCCSSCHHHHHHHHHTT------------------------SCCCEEEEECTTCCCEEEEEEECSSEE
T ss_pred CCEEEEEcCCCCCCCCCCHHHHHHHHhcc------------------------cCCCEEEEECCCCcEEEEEEEeCCCcE
Confidence 69999999997 99999999999999871 478999999999999999999999999
Q ss_pred EEEEEeecCccccHHHHHHHHHHhhcCCCeeeeccccC
Q 027747 182 YSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 219 (219)
Q Consensus 182 i~i~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL 219 (219)
|||+|++.||++||+||++||+||.++++|+|+|+|||
T Consensus 187 iei~H~a~sR~~Fa~Gal~Aa~~l~~~~~G~Y~m~dvL 224 (228)
T 1vm6_A 187 IEIKHRAISRTVFAIGALKAAEFLVGKDPGMYSFEEVI 224 (228)
T ss_dssp EEEEEEECCTHHHHHHHHHHHHHHTTCCSEEECHHHHH
T ss_pred EEEEEEeCcHHHhHhHHHHHHHHHhcCCCCEecHHHHh
Confidence 99999999999999999999999999999999999986
No 5
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=100.00 E-value=2.3e-65 Score=445.72 Aligned_cols=198 Identities=29% Similarity=0.447 Sum_probs=177.1
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhcc-CceEEEccChhHHHH
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKA-SMGCLIAPTLSIGSI 89 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~-~~~vv~spNfSlGv~ 89 (219)
+|+++++. ..+||+||||+|+++.+++++|+++|+|+|+|||||++++.+.|+++|++. ++|++++||||+|+|
T Consensus 36 ~dl~~~~~-----~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ 110 (245)
T 1p9l_A 36 DPLSLLTD-----GNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAV 110 (245)
T ss_dssp CCTHHHHH-----TTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHH
T ss_pred CCHHHHhc-----cCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHH
Confidence 56777765 269999999999999999999999999999999999999999999999765 899999999999999
Q ss_pred HHHHHHHHHhhhcCCeEEEecCCC-CCCCCcHHHHHHHHHHHhcCc------ccCCCccccccccccccCCCCceeEEEE
Q 027747 90 LLQQAAISASFHYKNVEIVESRPN-ARDFPSPDATQIANNLSNLGQ------IYNREDISTDVKARGQVLGEDGVRVHSM 162 (219)
Q Consensus 90 ll~~~~~~aa~~~~dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~~------~~~~~~~~~~~~~r~~~~~~~~i~ihS~ 162 (219)
+|+++++.++++|+|+||+|+||+ |+|+|||||++|++.|++.+. .+.|++. .+.|+.. .++|+|||+
T Consensus 111 ll~~l~~~aa~~~~dieIiE~HH~~K~DaPSGTA~~lae~i~~~~~~~~~~~~~~~~~~---~g~r~~~--~~~i~i~s~ 185 (245)
T 1p9l_A 111 LSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSL---PGARGAD--VDGIPVHAV 185 (245)
T ss_dssp HHHHHHHHHGGGCSEEEEEEEECTTCCSSSCHHHHHHHHHHHHHTTTSCCCCCCCCSCC---TTTTCEE--ETTEEEEEE
T ss_pred HHHHHHHHHHhhcCCEEEEECcccCCCCCCCHHHHHHHHHHHHhhcccccccccccccc---cCCCCCC--CCcceEEEE
Confidence 999999999999999999999997 999999999999999987543 1223322 2456542 379999999
Q ss_pred EcCCCceEEEEEEccCCcEEEEEEeecCccccHHHHHHHHHHhhcCCCe-eeeccccC
Q 027747 163 VLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNL-VYGLEKFL 219 (219)
Q Consensus 163 R~g~ivg~H~V~f~~~~E~i~i~H~a~sR~~Fa~Gal~Aa~~l~~~~~g-~y~m~dvL 219 (219)
|+|+++|+|+|+|++++|+|||+|++.||++||+||++||+|+.+ ++| +|+|+|||
T Consensus 186 R~g~ivg~h~V~f~~~~e~i~i~H~a~sR~~Fa~Ga~~Aa~~l~~-~~Gl~y~m~dvl 242 (245)
T 1p9l_A 186 RLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAE-RPGLTVGLEPLL 242 (245)
T ss_dssp ECTTCCEEEEEEEEETTEEEEEEEEECSGGGGHHHHHHHHHHGGG-SCEEEESSHHHH
T ss_pred ECCCCCeEEEEEEcCCCcEEEEEEEeCchhhhHHHHHHHHHHHhc-CCCCEEcHHHhh
Confidence 999999999999999999999999999999999999999999995 557 79999986
No 6
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=100.00 E-value=2.1e-64 Score=444.99 Aligned_cols=201 Identities=18% Similarity=0.235 Sum_probs=184.8
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+.++++++|+++++. .+|||||||.|++..+++++|+++|+|+|+|||||+++|.++|.+++ +++|++++||
T Consensus 57 ~~~v~~~~dl~~~l~------~~DvVIDft~p~~~~~~~~~a~~~G~~vVigTtG~~~e~~~~L~~~a--~~~~vv~a~N 128 (273)
T 1dih_A 57 KTGVTVQSSLDAVKD------DFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAA--ADIAIVFAAN 128 (273)
T ss_dssp CCSCCEESCSTTTTT------SCSEEEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHT--TTSCEEECSC
T ss_pred cCCceecCCHHHHhc------CCCEEEEcCChHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHhc--CCCCEEEEec
Confidence 357788889998885 68999999999999999999999999999999999999999999998 6689999999
Q ss_pred hhHHHHHHHHHHHHHhhhc---CCeEEEecCCC-CCCCCcHHHHHHHHHHHhcC-------cccCCCccccccccccccC
Q 027747 84 LSIGSILLQQAAISASFHY---KNVEIVESRPN-ARDFPSPDATQIANNLSNLG-------QIYNREDISTDVKARGQVL 152 (219)
Q Consensus 84 fSlGv~ll~~~~~~aa~~~---~dieIiE~Hh~-K~DaPSGTA~~la~~i~~~~-------~~~~~~~~~~~~~~r~~~~ 152 (219)
||+|+|+|+++++.++++| ||+||+|+||+ |+|+|||||+++++.+++.+ .+++|++.. ++|
T Consensus 129 ~siGvn~~~~l~~~aa~~~~~~~dieiiE~Hh~~K~DaPSGTA~~~ae~i~~~~~~~~~~~~~~~r~~~~---~~r---- 201 (273)
T 1dih_A 129 FSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHT---GER---- 201 (273)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTSEEEEEEEECTTCCSSSCHHHHHHHHHHHHHTTCCGGGTEECCCCSCC---CSC----
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCEEEEEeecCCCCCCCCHHHHHHHHHHHHhhCCCccccccccccCcc---CCC----
Confidence 9999999999999999998 69999999997 99999999999999998742 245566543 456
Q ss_pred CCCceeEEEEEcCCCceEEEEEEccCCcEEEEEEeecCccccHHHHHHHHHHhhcCCCeeeeccccC
Q 027747 153 GEDGVRVHSMVLPGLPSSTTVYFSRPGEVYSIKHDITDVQSLMPGLILAIRKVVHLKNLVYGLEKFL 219 (219)
Q Consensus 153 ~~~~i~ihS~R~g~ivg~H~V~f~~~~E~i~i~H~a~sR~~Fa~Gal~Aa~~l~~~~~g~y~m~dvL 219 (219)
++++|+|||+|+|+++|+|+|+|++++|+|||+|++.||++||+||++||+||.++++|+|+|+|||
T Consensus 202 ~~~~i~i~s~R~g~vvg~h~v~f~~~ge~i~i~H~a~~R~~fa~Ga~~Aa~~l~~~~~g~y~m~dvl 268 (273)
T 1dih_A 202 VPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVL 268 (273)
T ss_dssp CTTCEEEEEEECTTCCEEEEEEEEETTEEEEEEEEECSTHHHHHHHHHHHHHHTTCCSSEECHHHHT
T ss_pred CCCcceEEEEeCCCCCccEEEEEcCCCcEEEEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEcHHHhh
Confidence 4589999999999999999999999999999999999999999999999999999999999999987
No 7
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=99.18 E-value=7.2e-13 Score=117.90 Aligned_cols=205 Identities=8% Similarity=-0.046 Sum_probs=129.1
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC-CChhhH-HHHHHHhhccCceEEEccC
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH-IQLETV-SALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG-~~~~~~-~~l~~~a~~~~~~vv~spN 83 (219)
|+++++|+++++. .+|+||++|.|....+++..|++.|+++|+.++. .+.++. ++|.+++++.+.-.++..|
T Consensus 45 gv~~~~d~~~ll~------~~DvViiatp~~~h~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~v~v~~~~ 118 (320)
T 1f06_A 45 PVFDVADVDKHAD------DVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTG 118 (320)
T ss_dssp CEEEGGGGGGTTT------TCSEEEECSCTTTHHHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCS
T ss_pred CCceeCCHHHHhc------CCCEEEEcCCcHHHHHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCCEEEEecC
Confidence 5677888888873 6999999999998999999999999999999974 666676 8899998876644445559
Q ss_pred hhHHHHHHHHHHHHHhh-----hcCCeEEEecCCC-CCCCCcHHHHHHH------HHHH---hcCccc-C-C--Cccccc
Q 027747 84 LSIGSILLQQAAISASF-----HYKNVEIVESRPN-ARDFPSPDATQIA------NNLS---NLGQIY-N-R--EDISTD 144 (219)
Q Consensus 84 fSlGv~ll~~~~~~aa~-----~~~dieIiE~Hh~-K~DaPSGTA~~la------~~i~---~~~~~~-~-~--~~~~~~ 144 (219)
|+-|+..+.+++..... +.++.+..|.||. +.++++|++-.+. +.+. ...... . + ......
T Consensus 119 ~~p~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gi~~a~g~~i~~e~~ld~v~~~~~p~~~~~d~~~~~~~ 198 (320)
T 1f06_A 119 WDPGMFSINRVYAAAVLAEHQQHTFWGPGLSQGHSDALRRIPGVQKAVQYTLPSEDALEKARRGEAGDLTGKQTHKRQCF 198 (320)
T ss_dssp BTTBHHHHHHHHHHHHCSSEEEEEEECSEECHHHHHHHHTSTTCSEEEEEEEECHHHHHHHHHTCCTTCCHHHHEEEEEE
T ss_pred ChHHHHHHHHHHhhccccccceecccCCCcccccccchhhcCchhhhhhcccCchHHHHHHhccCCCccchhhhhhceEE
Confidence 99999888888776433 1234567888885 8888888532211 1111 111110 0 0 000000
Q ss_pred cccccccCCCCceeEEEEEcCCC------------------------ceEEEEEE---ccCCcEEEEEEeecCcccc-HH
Q 027747 145 VKARGQVLGEDGVRVHSMVLPGL------------------------PSSTTVYF---SRPGEVYSIKHDITDVQSL-MP 196 (219)
Q Consensus 145 ~~~r~~~~~~~~i~ihS~R~g~i------------------------vg~H~V~f---~~~~E~i~i~H~a~sR~~F-a~ 196 (219)
...+|.++ ..|..|+.|.++. -|.|-++. +.+.++|+++.+..+.-.| |.
T Consensus 199 ~~~eG~d~--~~i~~~~~~~~~~~a~yd~~v~~~~~~~l~~~~~~~~~g~~v~~~~~~g~~~~~~~~~~~~~~~~~~ta~ 276 (320)
T 1f06_A 199 VVADAADH--ERIENDIRTMPDYFVGYEVEVNFIDEATFDSEHTGMPHGGHVITTGDTGGFNHTVEYILKLDRNPDFTAS 276 (320)
T ss_dssp EECCGGGH--HHHHHHHHTCTTTTTTSEEEEEECCHHHHHHHSSCCCEEEEEEEEEESSSCEEEEEEEEEESCHHHHHHH
T ss_pred EEeCCcCh--HHHHHHHHhcccccCCCceEEEEEchHHhhhhhcCCCCCcEEEEeecCCCCceeEEEEecCCCCcchhhH
Confidence 01112211 2222333332221 15564444 4455568888777543333 44
Q ss_pred HHHHHHHH----hhcCCCeeeecccc
Q 027747 197 GLILAIRK----VVHLKNLVYGLEKF 218 (219)
Q Consensus 197 Gal~Aa~~----l~~~~~g~y~m~dv 218 (219)
=++-||++ +...++|+|+|-|+
T Consensus 277 ~~v~~~~~~~~~~~~~~~G~~t~~d~ 302 (320)
T 1f06_A 277 SQIAFGRAAHRMKQQGQSGAFTVLEV 302 (320)
T ss_dssp HHHHHHHHHHHHHHTTCCEEECGGGS
T ss_pred HHHHHHHHHHHHHhcCCCCCcccccC
Confidence 56677888 77888999999886
No 8
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=99.01 E-value=3.6e-10 Score=100.11 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=70.1
Q ss_pred CccccccCHHHHHhcccCCCC-CcEEEECCChhhHHHHHHHHHHcCCc-EEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIPVMSDLTMVLGSISQSKA-RAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~-~DVvIDFS~p~~~~~~~~~~~~~g~p-~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+|++++++++++.++ .. +|++|+|+.|+.+.++++.|.+.|++ +|++|+||++++.++|.+++++.++. ++.|
T Consensus 54 ~G~~vy~sl~el~~~----~~~~DvaIi~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGP 128 (297)
T 2yv2_A 54 HGVPVYDSVKEALAE----HPEINTSIVFVPAPFAPDAVYEAVDAGIRLVVVITEGIPVHDTMRFVNYARQKGAT-IIGP 128 (297)
T ss_dssp TTEEEESSHHHHHHH----CTTCCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECS
T ss_pred CCEeeeCCHHHHhhc----CCCCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcC
Confidence 689999999999852 13 89999999999999999999999999 88899999998889999999887774 7889
Q ss_pred ChhHHHHH
Q 027747 83 TLSIGSIL 90 (219)
Q Consensus 83 NfSlGv~l 90 (219)
| ++|+..
T Consensus 129 N-c~Gii~ 135 (297)
T 2yv2_A 129 N-CPGAIT 135 (297)
T ss_dssp S-SCEEEE
T ss_pred C-CCeeEc
Confidence 9 777654
No 9
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=98.98 E-value=4.6e-10 Score=99.28 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=70.4
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCc-EEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p-~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+|++++++++++.++ ..+|++|+|+.|+.+.++++.|.+.|++ +|+.|+||++++.++|.+++++.++. ++.||
T Consensus 54 ~G~~vy~sl~el~~~----~~~Dv~ii~vp~~~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~-viGPN 128 (294)
T 2yv1_A 54 HGVPVFDTVKEAVKE----TDANASVIFVPAPFAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVK-IIGPN 128 (294)
T ss_dssp TTEEEESSHHHHHHH----HCCCEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EECSS
T ss_pred CCEeeeCCHHHHhhc----CCCCEEEEccCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEcCC
Confidence 689999999999863 1589999999999999999999999999 78899999998889999999887774 78899
Q ss_pred hhHHHHH
Q 027747 84 LSIGSIL 90 (219)
Q Consensus 84 fSlGv~l 90 (219)
++|+..
T Consensus 129 -c~Gii~ 134 (294)
T 2yv1_A 129 -TPGIAS 134 (294)
T ss_dssp -CCEEEE
T ss_pred -Cceeec
Confidence 777654
No 10
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=98.97 E-value=6.6e-10 Score=98.02 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=70.4
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCc-EEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p-~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+|++++++++++.++ ..+|++|+|+.|+.+.++++.|.+.|++ +|+.|+||+.++.++|.+++++.++. ++.||
T Consensus 48 ~G~~vy~sl~el~~~----~~~Dv~Ii~vp~~~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~-vigPN 122 (288)
T 1oi7_A 48 LGVPVYDTVKEAVAH----HEVDASIIFVPAPAAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSR-LIGGN 122 (288)
T ss_dssp TTEEEESSHHHHHHH----SCCSEEEECCCHHHHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCE-EEESS
T ss_pred CCEEeeCCHHHHhhc----CCCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEeCC
Confidence 689999999999863 2699999999999999999999999999 88899999998888999999887774 77899
Q ss_pred hhHHHHH
Q 027747 84 LSIGSIL 90 (219)
Q Consensus 84 fSlGv~l 90 (219)
++|+..
T Consensus 123 -c~Gii~ 128 (288)
T 1oi7_A 123 -CPGIIS 128 (288)
T ss_dssp -SCEEEE
T ss_pred -CCeEEc
Confidence 777654
No 11
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=98.67 E-value=4.7e-08 Score=85.96 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=68.7
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcE-EEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~-ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+|+++++++++++++ ..+|++|+|+.|+...+.++.|.+.|+++ |+.|+|++.++.++|.++++++++. ++.||
T Consensus 48 ~G~~vy~sl~el~~~----~~~D~viI~tP~~~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~-liGPN 122 (288)
T 2nu8_A 48 LGLPVFNTVREAVAA----TGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVR-MIGPN 122 (288)
T ss_dssp TTEEEESSHHHHHHH----HCCCEEEECCCGGGHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCE-EECSS
T ss_pred CCeeccCCHHHHhhc----CCCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCE-EEecC
Confidence 689999999999862 25899999999999999999999999996 7789999998888999999888885 58999
Q ss_pred hhHHHH
Q 027747 84 LSIGSI 89 (219)
Q Consensus 84 fSlGv~ 89 (219)
++|+.
T Consensus 123 -c~Gi~ 127 (288)
T 2nu8_A 123 -TPGVI 127 (288)
T ss_dssp -CCEEE
T ss_pred -Cccee
Confidence 55543
No 12
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=98.30 E-value=1.2e-06 Score=78.91 Aligned_cols=76 Identities=18% Similarity=0.330 Sum_probs=63.0
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH-cCCcEEEe-cCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~-~g~p~ViG-TTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+|+|+|+++++++... .++|++|+|+.|+.+.+.+..+++ .|++.|++ |+||.+++..+|.++++++++ -++-|
T Consensus 62 ~Gvpvy~sv~ea~~~~---p~~DlaVi~vp~~~a~~ai~ea~~~~Gv~~vViiT~G~~e~~~~~l~~~a~~~g~-rliGP 137 (334)
T 3mwd_B 62 ILIPVFKNMADAMRKH---PEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGV-TIIGP 137 (334)
T ss_dssp EEEEEESSHHHHHHHC---TTCCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTC-EEECS
T ss_pred CCceeeCCHHHHhhcC---CCCcEEEEecCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCC-EEEcc
Confidence 5799999999998631 147999999999988777666666 99999998 999999888899999998887 56678
Q ss_pred Ch
Q 027747 83 TL 84 (219)
Q Consensus 83 Nf 84 (219)
|-
T Consensus 138 Nc 139 (334)
T 3mwd_B 138 AT 139 (334)
T ss_dssp SC
T ss_pred CC
Confidence 83
No 13
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=98.29 E-value=5.2e-07 Score=76.07 Aligned_cols=161 Identities=11% Similarity=0.078 Sum_probs=104.0
Q ss_pred cccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-hhH-HHHHHHhhccCceEEEccChhH
Q 027747 9 VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-ETV-SALSAFCDKASMGCLIAPTLSI 86 (219)
Q Consensus 9 v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-~~~-~~l~~~a~~~~~~vv~spNfSl 86 (219)
+++|++++++ ..+|+||+++.++...+.+..+++.|+++|+.+|+... ++. ++|.++++++++.+++.+|++-
T Consensus 39 ~~~~~~~l~~-----~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g 113 (236)
T 2dc1_A 39 MVRGIDEFLQ-----REMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIG 113 (236)
T ss_dssp EESSHHHHTT-----SCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCS
T ss_pred hcCCHHHHhc-----CCCCEEEECCCHHHHHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCcccc
Confidence 4668888873 26999999999999999999999999999999998744 333 6888889888999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEecCC-CCCCCC----cHHHHHHHHHHHhcCcccCCCccccccccccccCCCCceeEEE
Q 027747 87 GSILLQQAAISASFHYKNVEIVESRP-NARDFP----SPDATQIANNLSNLGQIYNREDISTDVKARGQVLGEDGVRVHS 161 (219)
Q Consensus 87 Gv~ll~~~~~~aa~~~~dieIiE~Hh-~K~DaP----SGTA~~la~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~i~ihS 161 (219)
|+..+... . + ....+.+.+.|| .+.+.| +|++...++.+.......- .. ...+. +...+.+.+
T Consensus 114 ~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~n~~~--~~-~~a~~-----~~~~~~l~~ 181 (236)
T 2dc1_A 114 GLDAIFSA-S-E--LIEEIVLTTRKNWRQFGRKGVIFEGSASEAAQKFPKNLNVAA--TL-SIASG-----KDVKVRLVA 181 (236)
T ss_dssp CHHHHHHT-G-G--GEEEEEEEEEEEGGGTTSCEEEEEEEHHHHHHHSTTCCHHHH--HH-HHHHS-----SCCEEEEEE
T ss_pred ChHHHHHh-h-c--cccEEEEEEEcChHHcCcceEEEeccHHHHHHHCCchHHHHH--HH-HHhcc-----CceEEEEEE
Confidence 98665421 1 1 234566666666 478877 5665433322211000000 00 00000 012234444
Q ss_pred EEcCCCceEEEEEEccCCcEEEEEEee
Q 027747 162 MVLPGLPSSTTVYFSRPGEVYSIKHDI 188 (219)
Q Consensus 162 ~R~g~ivg~H~V~f~~~~E~i~i~H~a 188 (219)
- ... .-.|++...|+.-.++++-+-
T Consensus 182 ~-~~~-~~~~~i~v~G~~g~~~~~~~~ 206 (236)
T 2dc1_A 182 D-EVE-ENIHEILVRGEFGEMEIRVRN 206 (236)
T ss_dssp E-SCS-SEEEEEEEEETTEEEEEEEEE
T ss_pred c-CCC-CcEEEEEEEecCeEEEEEEeC
Confidence 4 333 457888888887777775443
No 14
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=97.91 E-value=3.1e-05 Score=68.60 Aligned_cols=75 Identities=12% Similarity=0.143 Sum_probs=65.3
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcE-EEecCCCChhhHHHHHHHhhcc-CceEEEcc
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKA-SMGCLIAP 82 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~-ViGTTG~~~~~~~~l~~~a~~~-~~~vv~sp 82 (219)
.|++++++++++.++ ..+|++|.|+.|+.+.+.++.|.+.|++. |+-|.|+..++..++.++++++ ++. ++.|
T Consensus 55 ~G~~vy~sl~el~~~----~~vD~avI~vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~-liGP 129 (305)
T 2fp4_A 55 LGLPVFNTVKEAKEQ----TGATASVIYVPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR-LIGP 129 (305)
T ss_dssp TTEEEESSHHHHHHH----HCCCEEEECCCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE-EECS
T ss_pred CCeeeechHHHhhhc----CCCCEEEEecCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcE-EEeC
Confidence 589999999999863 15999999999999999999999999998 7899999877667899999888 887 5778
Q ss_pred Ch
Q 027747 83 TL 84 (219)
Q Consensus 83 Nf 84 (219)
|.
T Consensus 130 nc 131 (305)
T 2fp4_A 130 NC 131 (305)
T ss_dssp SS
T ss_pred CC
Confidence 85
No 15
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=97.50 E-value=0.00069 Score=59.26 Aligned_cols=100 Identities=4% Similarity=-0.041 Sum_probs=75.4
Q ss_pred Ccc-ccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe-cCCCChhhHHHHHHHhhcc-CceEEEc
Q 027747 5 LEI-PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKA-SMGCLIA 81 (219)
Q Consensus 5 ~~~-~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG-TTG~~~~~~~~l~~~a~~~-~~~vv~s 81 (219)
+|+ .+++|++++++. ..+|+||.+|.+..-.+.+..|++.|+++++. ..+.+.++.++|.++++++ ++.+..+
T Consensus 54 ~g~~~~~~~~~~~l~~----~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~ 129 (346)
T 3cea_A 54 LGVETTYTNYKDMIDT----ENIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSG 129 (346)
T ss_dssp TCCSEEESCHHHHHTT----SCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECC
T ss_pred hCCCcccCCHHHHhcC----CCCCEEEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEe
Confidence 456 578899999863 36899999999999999999999999999987 4678888888899999888 8888888
Q ss_pred cCh--hHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 82 PTL--SIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 82 pNf--SlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
.|+ +-++..+.++++. ..+-++..++.
T Consensus 130 ~~~r~~p~~~~~~~~i~~--g~iG~i~~v~~ 158 (346)
T 3cea_A 130 FMRRYDDSYRYAKKIVDN--GDIGKIIYMRG 158 (346)
T ss_dssp CGGGTCHHHHHHHHHHHT--TTTCSEEEEEE
T ss_pred cccccCHHHHHHHHHHHc--CCCCCeEEEEE
Confidence 774 3455555554432 23344544444
No 16
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=97.45 E-value=0.00019 Score=55.58 Aligned_cols=73 Identities=8% Similarity=0.129 Sum_probs=62.0
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.|.+.+.+++++- . +|+++=|..|+.+.+.++.|.+.|++.|+=+.|+.+ +++.++++++++.++ +|
T Consensus 45 ~G~~~y~sl~dlp------~-vDlavi~~p~~~v~~~v~e~~~~g~k~v~~~~G~~~---~e~~~~a~~~Girvv--~n- 111 (122)
T 3ff4_A 45 LGKTIINERPVIE------G-VDTVTLYINPQNQLSEYNYILSLKPKRVIFNPGTEN---EELEEILSENGIEPV--IG- 111 (122)
T ss_dssp TTEECBCSCCCCT------T-CCEEEECSCHHHHGGGHHHHHHHCCSEEEECTTCCC---HHHHHHHHHTTCEEE--ES-
T ss_pred CCeeccCChHHCC------C-CCEEEEEeCHHHHHHHHHHHHhcCCCEEEECCCCCh---HHHHHHHHHcCCeEE--CC-
Confidence 4677788887773 4 899999999999999999999999999999999975 467888888999987 56
Q ss_pred hHHHHH
Q 027747 85 SIGSIL 90 (219)
Q Consensus 85 SlGv~l 90 (219)
++|+.+
T Consensus 112 C~gv~l 117 (122)
T 3ff4_A 112 CTLVML 117 (122)
T ss_dssp CHHHHH
T ss_pred cCeEEe
Confidence 888865
No 17
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=97.37 E-value=0.0013 Score=58.16 Aligned_cols=87 Identities=23% Similarity=0.253 Sum_probs=73.7
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccCh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
++++++|++++|+. .++|+|+..|.+..-.+.+..|++.|+++++-.. +.+.++.++|.++++++++.+.+..|+
T Consensus 52 ~~~~~~~~~~ll~~----~~vD~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~ 127 (352)
T 3kux_A 52 AIPVVSDPQMLFND----PSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNR 127 (352)
T ss_dssp SCCEESCHHHHHHC----SSCCEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECCGG
T ss_pred CCceECCHHHHhcC----CCCCEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEeec
Confidence 67789999999984 3689999999888889999999999999999887 888999999999999999999888884
Q ss_pred --hHHHHHHHHHHH
Q 027747 85 --SIGSILLQQAAI 96 (219)
Q Consensus 85 --SlGv~ll~~~~~ 96 (219)
.-.+.-+.++++
T Consensus 128 r~~p~~~~~~~~i~ 141 (352)
T 3kux_A 128 RWDSDFLTLKTLLA 141 (352)
T ss_dssp GGCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHh
Confidence 455555555554
No 18
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=97.36 E-value=0.0015 Score=56.82 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=70.9
Q ss_pred Cccc-cccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIP-VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~-v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+|++ +++|+++++.. ..+|+|+..|.|..-.+.+..|++.|+++++-. .+.+.++.++|.++++++++.+..+.
T Consensus 45 ~g~~~~~~~~~~~l~~----~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~ 120 (332)
T 2glx_A 45 NGIGKSVTSVEELVGD----PDVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNH 120 (332)
T ss_dssp TTCSCCBSCHHHHHTC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred cCCCcccCCHHHHhcC----CCCCEEEEeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEee
Confidence 4554 78899999863 358999999999999999999999999999875 46788888999999999999988888
Q ss_pred Chh--HHHHHHHHHHH
Q 027747 83 TLS--IGSILLQQAAI 96 (219)
Q Consensus 83 NfS--lGv~ll~~~~~ 96 (219)
|+- -++..+.++++
T Consensus 121 ~~r~~p~~~~~~~~i~ 136 (332)
T 2glx_A 121 HLRNAAAHRAMRDAIA 136 (332)
T ss_dssp CGGGSHHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHH
Confidence 754 34555555443
No 19
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=97.31 E-value=0.00024 Score=62.23 Aligned_cols=73 Identities=14% Similarity=0.071 Sum_probs=65.9
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEec--CCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYV--PHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAIS 97 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT--TG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~ 97 (219)
++|+||++|.+..-.+++..|++.|+++++.+ ++.+.++..+|.+++++.++.++++.+|.-|+..+.++++.
T Consensus 65 ~~DvViiatp~~~h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~v~~~~~p~~~~~~~~i~~ 139 (304)
T 3bio_A 65 SVDVALVCSPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIASGWDPGSDSVVRTLMQ 139 (304)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHHH
T ss_pred CCCEEEECCCchhhHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHHHHC
Confidence 69999999999999999999999999999876 47888888999999999998888999999999888887765
No 20
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=97.31 E-value=0.0021 Score=56.28 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=72.7
Q ss_pred Ccc-ccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEI-PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~-~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+|+ .+++|++++++. ..+|+|+..|.+..-.+.+..|++.|+++++-.. +.+.++.++|.++++++++.+....
T Consensus 50 ~~~~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~ 125 (330)
T 3e9m_A 50 LAIPVAYGSYEELCKD----ETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQ 125 (330)
T ss_dssp TTCCCCBSSHHHHHHC----TTCSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECC
T ss_pred cCCCceeCCHHHHhcC----CCCCEEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 456 478999999973 3689999999999999999999999999998766 7888999999999999999999888
Q ss_pred Ch--hHHHHHHHHHHH
Q 027747 83 TL--SIGSILLQQAAI 96 (219)
Q Consensus 83 Nf--SlGv~ll~~~~~ 96 (219)
|+ .-.+..+.++++
T Consensus 126 ~~r~~p~~~~~k~~i~ 141 (330)
T 3e9m_A 126 KSVFLPITQKVKATIQ 141 (330)
T ss_dssp SGGGCHHHHHHHHHHH
T ss_pred hhhhCHHHHHHHHHHh
Confidence 84 444444455444
No 21
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Probab=97.30 E-value=9.7e-05 Score=66.07 Aligned_cols=106 Identities=17% Similarity=0.062 Sum_probs=80.0
Q ss_pred CHHHHHhcccCCCCCcEEEECCCh----hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHH
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDA----STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p----~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
|.++++.+ ..+|||||+|.+ +...+++..|+++|+++|++..++..++.++|.++|+++++.+++-++.+-|
T Consensus 73 d~~e~l~~----~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~g 148 (325)
T 3ing_A 73 SGPEDLMG----EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGG 148 (325)
T ss_dssp CSGGGGTT----SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred CHHHHhcC----CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeeccc
Confidence 55666653 468999999965 4457999999999999999999877778899999999999999999999988
Q ss_pred HHHHHHHHHHHhhhcCCeEEEecCCCCCCCCcHHHHHHHHHH
Q 027747 88 SILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNL 129 (219)
Q Consensus 88 v~ll~~~~~~aa~~~~dieIiE~Hh~K~DaPSGTA~~la~~i 129 (219)
.-++..+-+.++. ..+.=++- .-|||.--+-..+
T Consensus 149 iPii~~l~~~l~g--~~I~~i~G------i~nGT~nyil~~m 182 (325)
T 3ing_A 149 VPLFSVLDYSILP--SKVKRFRG------IVSSTINYVIRNM 182 (325)
T ss_dssp SCCHHHHHHTCTT--CCEEEEEE------ECCHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC--CCeeEEEE------EEEeeeeEEeecc
Confidence 8777554443321 34443332 2478876666655
No 22
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Probab=97.29 E-value=0.00021 Score=62.09 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=80.9
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCC--ChhhHHHHHHHhhccCceEEEccC
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~--~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
|+.+++|+++++. .+|+||+...++++.+.+..+++.|+++|+..+|. +++-.++|+++|++.+..+.+.+=
T Consensus 47 gv~a~~d~d~lla------~pD~VVe~A~~~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSG 120 (253)
T 1j5p_A 47 PGVVRLDEFQVPS------DVSTVVECASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSG 120 (253)
T ss_dssp SSSEECSSCCCCT------TCCEEEECSCHHHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCT
T ss_pred CceeeCCHHHHhh------CCCEEEECCCHHHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCC
Confidence 6677889999985 69999999999999999999999999999999984 444468999999988888655333
Q ss_pred hhHHHHHHHHHHHHHhhhcCCeEEEec-CCC--CC--CCC----cHHHHHHHHHH
Q 027747 84 LSIGSILLQQAAISASFHYKNVEIVES-RPN--AR--DFP----SPDATQIANNL 129 (219)
Q Consensus 84 fSlGv~ll~~~~~~aa~~~~dieIiE~-Hh~--K~--DaP----SGTA~~la~~i 129 (219)
---|. . .++.++..+..+.++=+ |+. +. ..| +|||...+..+
T Consensus 121 Ai~Gl---D-~l~aa~g~l~~V~~~t~K~P~~~~~~l~e~~~~feG~areA~~~f 171 (253)
T 1j5p_A 121 AIGGL---D-VLSSIKDFVKNVRIETIKPPKSLGLDLKGKTVVFEGSVEEASKLF 171 (253)
T ss_dssp TCCCH---H-HHHHHGGGEEEEEEEEEECGGGGTCCCSSCEEEEEECHHHHHHHC
T ss_pred cccch---h-HHHHhcCCccEEEEEEeCChHHhCcccccceEEEEEcHHHHHHHc
Confidence 33332 2 23333333456666544 443 22 222 78888777543
No 23
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=97.24 E-value=0.0025 Score=55.63 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=71.8
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+|++ ++|+++++.. ..+|+|+..|.+..-.+.+..|++.|+++++-.. +.+.++.++|.++++++++.+....|
T Consensus 48 ~~~~-~~~~~~~l~~----~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~ 122 (331)
T 4hkt_A 48 YGCE-VRTIDAIEAA----ADIDAVVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFN 122 (331)
T ss_dssp TTCE-ECCHHHHHHC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCG
T ss_pred hCCC-cCCHHHHhcC----CCCCEEEEeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEccc
Confidence 5677 8999999973 3689999999999999999999999999998766 78899999999999999999988888
Q ss_pred h--hHHHHHHHHHHH
Q 027747 84 L--SIGSILLQQAAI 96 (219)
Q Consensus 84 f--SlGv~ll~~~~~ 96 (219)
+ .-.+..+.++++
T Consensus 123 ~r~~p~~~~~~~~i~ 137 (331)
T 4hkt_A 123 RRFDPHFMAVRKAID 137 (331)
T ss_dssp GGGCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 4 444444444443
No 24
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=97.23 E-value=0.0014 Score=57.53 Aligned_cols=101 Identities=12% Similarity=0.084 Sum_probs=77.3
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEcc
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
.+|+++++|++++++. ..+|+|+..|.+..-.+.+..|++.|+++++-.. +.+.++..+|.++++++++.+.+..
T Consensus 48 ~~g~~~~~~~~~~l~~----~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~ 123 (344)
T 3euw_A 48 ANGAEAVASPDEVFAR----DDIDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGF 123 (344)
T ss_dssp TTTCEEESSHHHHTTC----SCCCEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECC
T ss_pred HcCCceeCCHHHHhcC----CCCCEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecc
Confidence 3567889999999973 3689999999999999999999999999999776 7888898999999999999888888
Q ss_pred ChhH--HHHHHHHHHHHHhhhcCCeEEEec
Q 027747 83 TLSI--GSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 83 NfSl--Gv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
|+-. .+..+.++++. ..+-++.-+..
T Consensus 124 ~~r~~p~~~~~k~~i~~--g~iG~i~~v~~ 151 (344)
T 3euw_A 124 NRRFDPSFAAINARVAN--QEIGNLEQLVI 151 (344)
T ss_dssp GGGGCHHHHHHHHHHHT--TTTSSEEEEEE
T ss_pred hhhcCHHHHHHHHHHhc--CCCCceEEEEE
Confidence 7643 33333333332 12334444444
No 25
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=97.23 E-value=0.0029 Score=55.32 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=74.0
Q ss_pred CCccc-cccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEc
Q 027747 4 PLEIP-VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 4 ~~~~~-v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
.+|++ +++|+++++++ ..+|+|+..|.+..-.+.+..|++.|+++++--. +.+.++.++|.++++++++.+..+
T Consensus 49 ~~~~~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~ 124 (329)
T 3evn_A 49 KYHLPKAYDKLEDMLAD----ESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEA 124 (329)
T ss_dssp CCCCSCEESCHHHHHTC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HcCCCcccCCHHHHhcC----CCCCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 45675 79999999973 3689999999999999999999999999998766 678888899999999999999988
Q ss_pred cCh--hHHHHHHHHHHH
Q 027747 82 PTL--SIGSILLQQAAI 96 (219)
Q Consensus 82 pNf--SlGv~ll~~~~~ 96 (219)
.|+ .-.+..+.++++
T Consensus 125 ~~~r~~p~~~~~~~~i~ 141 (329)
T 3evn_A 125 QKSVFIPMTQVIKKLLA 141 (329)
T ss_dssp CSSCSSHHHHHHHHHHH
T ss_pred EcccCCHHHHHHHHHHh
Confidence 876 555555555554
No 26
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*
Probab=97.22 E-value=0.00062 Score=63.48 Aligned_cols=99 Identities=17% Similarity=0.026 Sum_probs=73.1
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECC-ChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
++.+++|.++++++ ...|+||++| +|+.-.+.+..|+++|+++|+.+.+.+.++-+.|.++|+++++.+.++.
T Consensus 92 ~~~v~~D~eeLL~d----~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~~~-- 165 (446)
T 3upl_A 92 KIAVTDDNDLILSN----PLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLGA-- 165 (446)
T ss_dssp CEEEESCHHHHHTC----TTCCEEEECSCCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEECT--
T ss_pred CceEECCHHHHhcC----CCCCEEEEcCCChHHHHHHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeeecC--
Confidence 35689999999974 4689999999 5677789999999999999998887777777899999988877666655
Q ss_pred hHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 85 SIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 85 SlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
+-.-.+..++++.+...-+.+-....
T Consensus 166 gdqp~~~~eLv~~a~~~G~~~v~~Gk 191 (446)
T 3upl_A 166 GDEPSSCMELIEFVSALGYEVVSAGK 191 (446)
T ss_dssp TSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CcchHHHHHHHHHHHhCCCeEEEecc
Confidence 43344455666665432234444443
No 27
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=97.21 E-value=0.0011 Score=57.49 Aligned_cols=74 Identities=14% Similarity=0.183 Sum_probs=63.0
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe-cCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG-TTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+|++++++++++ . ..+|+|+.+|.+..-.+.+..|++.|+++++. ..+.+.++.++|.++++++++.+....|
T Consensus 51 ~g~~~~~~~~~l-~-----~~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~ 124 (319)
T 1tlt_A 51 WRIPYADSLSSL-A-----ASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFN 124 (319)
T ss_dssp HTCCBCSSHHHH-H-----TTCSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECG
T ss_pred cCCCccCcHHHh-h-----cCCCEEEEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeee
Confidence 356678888876 4 37999999999999999999999999999988 4678888999999999999888887766
Q ss_pred h
Q 027747 84 L 84 (219)
Q Consensus 84 f 84 (219)
+
T Consensus 125 ~ 125 (319)
T 1tlt_A 125 R 125 (319)
T ss_dssp G
T ss_pred c
Confidence 5
No 28
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=97.21 E-value=0.0013 Score=58.21 Aligned_cols=75 Identities=7% Similarity=0.033 Sum_probs=65.3
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
+++++|++++++. ..+|+|+..|.+..-.+.+..|++.|+++++-. ...+.++.++|.++++++++.+..+.|+-
T Consensus 57 ~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~~~~r 132 (362)
T 1ydw_A 57 TKIHGSYESLLED----PEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWV 132 (362)
T ss_dssp CEEESSHHHHHHC----TTCCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGG
T ss_pred CeeeCCHHHHhcC----CCCCEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 4678999999973 368999999999999999999999999999986 57888899999999999999988877653
No 29
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=97.19 E-value=0.0029 Score=56.28 Aligned_cols=87 Identities=13% Similarity=0.109 Sum_probs=73.1
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccC-
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT- 83 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spN- 83 (219)
++++++|++++++. ..+|+|+..|-+..-.+.+..|++.|+++++-.. +.+.++.++|.++++++++.+.+..|
T Consensus 52 ~~~~~~~~~~ll~~----~~~D~V~i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~ 127 (364)
T 3e82_A 52 DVTVIASPEAAVQH----PDVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNR 127 (364)
T ss_dssp TSEEESCHHHHHTC----TTCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCC
T ss_pred CCcEECCHHHHhcC----CCCCEEEEeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeec
Confidence 56789999999973 3689999999999999999999999999988665 67888889999999999999988888
Q ss_pred -hhHHHHHHHHHHH
Q 027747 84 -LSIGSILLQQAAI 96 (219)
Q Consensus 84 -fSlGv~ll~~~~~ 96 (219)
|.-.+..+.++++
T Consensus 128 r~~p~~~~~~~~i~ 141 (364)
T 3e82_A 128 RWDSDYLGIRQVIE 141 (364)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 4556665666554
No 30
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=97.19 E-value=0.002 Score=56.77 Aligned_cols=88 Identities=17% Similarity=0.101 Sum_probs=73.4
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+|+++++|++++++. ..+|+|+-.|.+..-.+.+..|++.|+++++-.. ..+.++..+|.++++++++.+.+..|
T Consensus 59 ~~~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~ 134 (354)
T 3q2i_A 59 TGARGHASLTDMLAQ----TDADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQ 134 (354)
T ss_dssp HCCEEESCHHHHHHH----CCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCG
T ss_pred cCCceeCCHHHHhcC----CCCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEc
Confidence 467889999999974 3689999999999999999999999999999766 78888889999999999999988888
Q ss_pred --hhHHHHHHHHHHH
Q 027747 84 --LSIGSILLQQAAI 96 (219)
Q Consensus 84 --fSlGv~ll~~~~~ 96 (219)
|+-.+..+.++++
T Consensus 135 ~r~~p~~~~~k~~i~ 149 (354)
T 3q2i_A 135 NRRNATLQLLKRAMQ 149 (354)
T ss_dssp GGGSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHh
Confidence 5555555555544
No 31
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=97.15 E-value=0.0032 Score=55.60 Aligned_cols=100 Identities=21% Similarity=0.163 Sum_probs=77.8
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
.++++++|++++++. .++|+|+-.|-+..-.+.+..|++.|+++++=.. ..+.++.++|.++++++++.+.+..|
T Consensus 49 ~~~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~ 124 (349)
T 3i23_A 49 KGVNFTADLNELLTD----PEIELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQN 124 (349)
T ss_dssp TTCEEESCTHHHHSC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCG
T ss_pred CCCeEECCHHHHhcC----CCCCEEEEeCCcHHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 367889999999974 3689999999999999999999999999998665 67788889999999999999999888
Q ss_pred h--hHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 84 L--SIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 84 f--SlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
+ .-.+.-+.++++. ..+-++.-++.
T Consensus 125 ~r~~p~~~~~~~~i~~--g~iG~i~~~~~ 151 (349)
T 3i23_A 125 RRFDGDYLAMKQVVEQ--GFLGEINEVET 151 (349)
T ss_dssp GGGCHHHHHHHHHHHH--TTTCSEEEEEE
T ss_pred ccCCHHHHHHHHHHhc--CCCCCEEEEEE
Confidence 4 4555555555442 22334444444
No 32
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=97.13 E-value=0.0012 Score=51.79 Aligned_cols=76 Identities=17% Similarity=0.075 Sum_probs=62.6
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.|++++++++++.. .+|++|=|+.++.+.+.++.|.+.|++.++-++|... +++.++++++++. ++-||
T Consensus 63 ~G~~~y~sl~~l~~------~vDlvvi~vp~~~~~~vv~~~~~~gi~~i~~~~g~~~---~~l~~~a~~~Gi~-vvGpn- 131 (144)
T 2d59_A 63 LGRKCYPSVLDIPD------KIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQYNTYN---REASKKADEAGLI-IVANR- 131 (144)
T ss_dssp TTEECBSSGGGCSS------CCSEEEECSCHHHHHHHHHHHHHHTCSEEEECTTCCC---HHHHHHHHHTTCE-EEESC-
T ss_pred CCeeccCCHHHcCC------CCCEEEEEeCHHHHHHHHHHHHHcCCCEEEECCCchH---HHHHHHHHHcCCE-EEcCC-
Confidence 47889999999864 6899888999999999999999999999999999864 4677788888888 44566
Q ss_pred hHHHHHH
Q 027747 85 SIGSILL 91 (219)
Q Consensus 85 SlGv~ll 91 (219)
++|+..-
T Consensus 132 c~gv~~~ 138 (144)
T 2d59_A 132 CMMREHE 138 (144)
T ss_dssp CHHHHHH
T ss_pred chhhcch
Confidence 6776553
No 33
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=97.12 E-value=0.0029 Score=56.12 Aligned_cols=87 Identities=13% Similarity=0.118 Sum_probs=73.4
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccC-
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT- 83 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spN- 83 (219)
++++++|++++|+. ..+|+|+-.|-+..-.+.+..|++.|+++++=-. ..+.++.++|.++++++++.+.+..|
T Consensus 50 ~~~~~~~~~~ll~~----~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~ 125 (362)
T 3fhl_A 50 QASIVRSFKELTED----PEIDLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQNR 125 (362)
T ss_dssp TSEEESCSHHHHTC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGG
T ss_pred CCceECCHHHHhcC----CCCCEEEEeCChHHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 67889999999974 3689999999999999999999999999998766 67888889999999999999999888
Q ss_pred -hhHHHHHHHHHHH
Q 027747 84 -LSIGSILLQQAAI 96 (219)
Q Consensus 84 -fSlGv~ll~~~~~ 96 (219)
|.-.+.-+.++++
T Consensus 126 R~~p~~~~~k~~i~ 139 (362)
T 3fhl_A 126 RWDADFLTVRDILA 139 (362)
T ss_dssp GGSHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHH
Confidence 4555555555554
No 34
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=97.11 E-value=0.00073 Score=67.36 Aligned_cols=75 Identities=19% Similarity=0.340 Sum_probs=64.3
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH-cCCcEEEe-cCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-FGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~-~g~p~ViG-TTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+|+|+|++++++.... ..+|+.|-|..|..+.+.++.|.+ .|++.|+. |.||.+.+..+|.++++++++ -++-|
T Consensus 548 ~Gvp~y~sv~ea~~~~---p~~DlaVI~vP~~~v~~av~ea~~~~Gvk~~Viis~Gf~e~~~~~l~~~A~~~g~-rliGP 623 (829)
T 3pff_A 548 ILIPVFKNMADAMRKH---PEVDVLINFASLRSAYDSTMETMNYAQIRTIAIIAEGIPEALTRKLIKKADQKGV-TIIGP 623 (829)
T ss_dssp EEEEEESSHHHHHHHC---TTCCEEEECCCTTTHHHHHHHHTTSTTCCEEEECCSCCCHHHHHHHHHHHHHHTC-EEECS
T ss_pred CCcccCCcHHHHhhcc---CCCcEEEEeCCHHHHHHHHHHHHhhCCCCEEEEeCCCCCHHHHHHHHHHHHHcCC-EEEcC
Confidence 5799999999998631 137999999999999999999999 99997666 889998777889999998887 46678
Q ss_pred C
Q 027747 83 T 83 (219)
Q Consensus 83 N 83 (219)
|
T Consensus 624 N 624 (829)
T 3pff_A 624 A 624 (829)
T ss_dssp S
T ss_pred C
Confidence 7
No 35
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=97.07 E-value=0.0019 Score=57.89 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=69.2
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+|+++++|++++++. ..+|+|+..|.+..-.+.+..|++.|+++++-.. ..+.++..+|.++++++++.+.+..|
T Consensus 48 ~g~~~~~~~~ell~~----~~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~ 123 (387)
T 3moi_A 48 YGIPVFATLAEMMQH----VQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTS 123 (387)
T ss_dssp HTCCEESSHHHHHHH----SCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCC
T ss_pred cCCCeECCHHHHHcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEec
Confidence 478889999999984 3689999999999999999999999999998766 67888889999999999999988887
Q ss_pred hhHH
Q 027747 84 LSIG 87 (219)
Q Consensus 84 fSlG 87 (219)
+-.-
T Consensus 124 ~R~~ 127 (387)
T 3moi_A 124 RSHD 127 (387)
T ss_dssp GGGS
T ss_pred cccC
Confidence 6543
No 36
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Probab=97.04 E-value=0.0003 Score=62.90 Aligned_cols=111 Identities=12% Similarity=0.099 Sum_probs=81.4
Q ss_pred cccc--CHHHHHhcccCCCCCcEEEECCChhh----HHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 8 PVMS--DLTMVLGSISQSKARAVVIDFTDAST----VYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 8 ~v~~--~l~~~l~~~~~~~~~DVvIDFS~p~~----~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
.+++ |++++++. ...|||||+|.++. ..+.+..|+++|+++|+...+.-..+.++|.++++++++.+++-
T Consensus 65 ~~~~~~d~~~ll~~----~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~e 140 (327)
T 3do5_A 65 MLRDDAKAIEVVRS----ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYE 140 (327)
T ss_dssp SCSBCCCHHHHHHH----SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECG
T ss_pred cccCCCCHHHHhcC----CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEE
Confidence 3555 99999974 46899999996654 58999999999999999988765567789999999999999999
Q ss_pred cChhHHHHHHHHHHHHHhhhcCCeEEEecCCCCCCCCcHHHHHHHHHHH
Q 027747 82 PTLSIGSILLQQAAISASFHYKNVEIVESRPNARDFPSPDATQIANNLS 130 (219)
Q Consensus 82 pNfSlGv~ll~~~~~~aa~~~~dieIiE~Hh~K~DaPSGTA~~la~~i~ 130 (219)
.+..-|.-++..+-+.++. ..+.=++- .-|||.--+-..+.
T Consensus 141 a~v~~g~Pii~~l~~~l~~--~~I~~I~G------IlnGT~nyilt~m~ 181 (327)
T 3do5_A 141 ATVGGAMPVVKLAKRYLAL--CEIESVKG------IFNGTCNYILSRME 181 (327)
T ss_dssp GGSSTTSCCHHHHHTTTTT--SCEEEEEE------ECCHHHHHHHHHHH
T ss_pred EEeeecCHHHHHHHHHhhC--CCccEEEE------EECCCcCcchhhcC
Confidence 9888887776554443321 23332221 12788777666654
No 37
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=97.02 E-value=0.0021 Score=55.75 Aligned_cols=86 Identities=19% Similarity=0.096 Sum_probs=71.2
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe-cCCCChhhHHHHHHHhhccCceEEEccC--
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPT-- 83 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG-TTG~~~~~~~~l~~~a~~~~~~vv~spN-- 83 (219)
+++++|+++++++ ..+|+|+..|.+..-.+.+..|++.|+++++- ....+.++..+|.++++++++.+....|
T Consensus 55 ~~~~~~~~~~l~~----~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r 130 (315)
T 3c1a_A 55 CVIESDWRSVVSA----PEVEAVIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQL 130 (315)
T ss_dssp CEEESSTHHHHTC----TTCCEEEEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGG
T ss_pred CcccCCHHHHhhC----CCCCEEEEeCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechh
Confidence 4678899999863 36899999999999999999999999999988 4578888889999999999998888776
Q ss_pred hhHHHHHHHHHHH
Q 027747 84 LSIGSILLQQAAI 96 (219)
Q Consensus 84 fSlGv~ll~~~~~ 96 (219)
|+-.+..+.++++
T Consensus 131 ~~p~~~~~~~~i~ 143 (315)
T 3c1a_A 131 FNPAWEALKADLT 143 (315)
T ss_dssp GCHHHHHHHHTHH
T ss_pred cCHHHHHHHHHHH
Confidence 4556666666665
No 38
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=97.02 E-value=0.0046 Score=53.78 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=71.7
Q ss_pred ccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEEEccC--h
Q 027747 8 PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPT--L 84 (219)
Q Consensus 8 ~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~spN--f 84 (219)
.+++|++++++ ..+|+|+..|.+..-.+.+..|++.|+++++-. ...+.++.++|.++++++++.+..+.| |
T Consensus 50 ~~~~~~~~~l~-----~~~D~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~ 124 (325)
T 2ho3_A 50 QLFDQLEVFFK-----SSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYH 124 (325)
T ss_dssp EEESCHHHHHT-----SSCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECTTTT
T ss_pred eEeCCHHHHhC-----CCCCEEEEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEEhhhc
Confidence 67889999983 369999999999999999999999999999985 578888889999999999988887665 5
Q ss_pred hHHHHHHHHHHHH
Q 027747 85 SIGSILLQQAAIS 97 (219)
Q Consensus 85 SlGv~ll~~~~~~ 97 (219)
+-+...+.++++.
T Consensus 125 ~p~~~~~~~~i~~ 137 (325)
T 2ho3_A 125 EKAFTTIKNFLAD 137 (325)
T ss_dssp CHHHHHHHHHHTT
T ss_pred ChHHHHHHHHhhh
Confidence 6677777776654
No 39
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=97.02 E-value=0.0018 Score=57.05 Aligned_cols=87 Identities=10% Similarity=0.103 Sum_probs=71.6
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+|++.++|++++++. ..+|+|+..|.+..-.+.+..|++.|+++++-.. +.+.++.++|.++++++++.+.+..|
T Consensus 50 ~g~~~~~~~~~~l~~----~~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 125 (354)
T 3db2_A 50 YNCAGDATMEALLAR----EDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHS 125 (354)
T ss_dssp HTCCCCSSHHHHHHC----SSCCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECG
T ss_pred cCCCCcCCHHHHhcC----CCCCEEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeec
Confidence 467789999999963 3689999999999999999999999999998766 78888999999999999998888887
Q ss_pred hhH--HHHHHHHHH
Q 027747 84 LSI--GSILLQQAA 95 (219)
Q Consensus 84 fSl--Gv~ll~~~~ 95 (219)
+-. .+..+.+++
T Consensus 126 ~R~~p~~~~~k~~i 139 (354)
T 3db2_A 126 SRRLGALRKMKEMI 139 (354)
T ss_dssp GGGSHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHH
Confidence 644 333344444
No 40
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=97.01 E-value=0.004 Score=55.22 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=72.5
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccCh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
++++++|++++|++ ..+|+|+-.|-+..-.+.+..|++.|+++++=-. ..+.++.++|.++++++++.+.+..|+
T Consensus 50 ~~~~~~~~~~ll~~----~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~ 125 (358)
T 3gdo_A 50 DAEVVHELEEITND----PAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNR 125 (358)
T ss_dssp TSEEESSTHHHHTC----TTCCEEEECSCTTTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGG
T ss_pred CCceECCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeec
Confidence 56789999999974 3689999999999999999999999999998665 677888899999999999999988884
Q ss_pred --hHHHHHHHHHHH
Q 027747 85 --SIGSILLQQAAI 96 (219)
Q Consensus 85 --SlGv~ll~~~~~ 96 (219)
.-.+..+.++++
T Consensus 126 r~~p~~~~~k~~i~ 139 (358)
T 3gdo_A 126 RWDNDFLTIKKLIS 139 (358)
T ss_dssp GGSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHh
Confidence 555555555554
No 41
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=97.00 E-value=0.006 Score=54.14 Aligned_cols=89 Identities=11% Similarity=0.107 Sum_probs=72.3
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEcc
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
..|+++++|++++++. ..+|+|+-.|-+..-.+.+..|++.|+++++=-. ..+.++.++|.++++++++.+.+..
T Consensus 48 ~~g~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~ 123 (359)
T 3e18_A 48 QKGLKIYESYEAVLAD----EKVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQ 123 (359)
T ss_dssp TTTCCBCSCHHHHHHC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEEC
T ss_pred hcCCceeCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEe
Confidence 3578899999999974 3689999999999999999999999999998654 6778888999999999999888888
Q ss_pred Chh--HHHHHHHHHHH
Q 027747 83 TLS--IGSILLQQAAI 96 (219)
Q Consensus 83 NfS--lGv~ll~~~~~ 96 (219)
|+- -.+..+.++++
T Consensus 124 ~~r~~p~~~~~k~~i~ 139 (359)
T 3e18_A 124 NRRWDEDFLIIKEMFE 139 (359)
T ss_dssp GGGGCHHHHHHHHHHH
T ss_pred eeccCHHHHHHHHHHH
Confidence 753 44444455444
No 42
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=96.96 E-value=0.003 Score=55.63 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=69.6
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEcc
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
..|+++++|++++|++ ...+|+|+-.|.+..-.+.+..|++.|+++++=.. +.+.++.++|.++++++++.+..+.
T Consensus 63 ~~g~~~~~~~~~ll~~---~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~ 139 (330)
T 4ew6_A 63 VEGVNSYTTIEAMLDA---EPSIDAVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASW 139 (330)
T ss_dssp CTTSEEESSHHHHHHH---CTTCCEEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred hcCCCccCCHHHHHhC---CCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 3578899999999973 02689999999999999999999999999998765 6788888999999999999999988
Q ss_pred ChhHH
Q 027747 83 TLSIG 87 (219)
Q Consensus 83 NfSlG 87 (219)
|+-..
T Consensus 140 ~~r~~ 144 (330)
T 4ew6_A 140 HSRYA 144 (330)
T ss_dssp GGGGS
T ss_pred hhhcc
Confidence 87543
No 43
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=96.95 E-value=0.0023 Score=58.64 Aligned_cols=97 Identities=8% Similarity=-0.067 Sum_probs=73.6
Q ss_pred ccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEEEccChh-
Q 027747 8 PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPTLS- 85 (219)
Q Consensus 8 ~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~spNfS- 85 (219)
.+++|+++++++ ..+|+|+..|.+..-.+.+..|++.|+++++-. .+.+.++.++|.++++++++.+....|+-
T Consensus 137 ~~~~~~~~ll~~----~~vD~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~ 212 (433)
T 1h6d_A 137 YDYSNFDKIAKD----PKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHY 212 (433)
T ss_dssp ECSSSGGGGGGC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGG
T ss_pred cccCCHHHHhcC----CCCCEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEEechhc
Confidence 378899999873 368999999999999999999999999988875 57888888999999999999988887754
Q ss_pred -HHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 86 -IGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 86 -lGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
-.+..+.++++. ..+-++.-++.
T Consensus 213 ~p~~~~~k~~i~~--G~iG~i~~v~~ 236 (433)
T 1h6d_A 213 DPMNRAAVKLIRE--NQLGKLGMVTT 236 (433)
T ss_dssp CHHHHHHHHHHHT--TSSCSEEEEEE
T ss_pred CHHHHHHHHHHHc--CCCCCcEEEEE
Confidence 344444444431 23445554443
No 44
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=96.93 E-value=0.0031 Score=55.81 Aligned_cols=88 Identities=9% Similarity=-0.051 Sum_probs=72.3
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+|++.++|++++++. ..+|+|+..|.+..-.+.+..|++.|+++++=.. +.+.++.++|.++++++++.+....|
T Consensus 73 ~g~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~ 148 (350)
T 3rc1_A 73 FGGEPVEGYPALLER----DDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFM 148 (350)
T ss_dssp HCSEEEESHHHHHTC----TTCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECG
T ss_pred cCCCCcCCHHHHhcC----CCCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEec
Confidence 477888999999973 3689999999999999999999999999887655 77888999999999999998888776
Q ss_pred h--hHHHHHHHHHHH
Q 027747 84 L--SIGSILLQQAAI 96 (219)
Q Consensus 84 f--SlGv~ll~~~~~ 96 (219)
+ .-.+..+.++++
T Consensus 149 ~R~~p~~~~~k~~i~ 163 (350)
T 3rc1_A 149 FLHHPQHRQVADMLD 163 (350)
T ss_dssp GGGCTHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHh
Confidence 4 445555555554
No 45
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=96.91 E-value=0.0032 Score=55.26 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=76.2
Q ss_pred Cccc-cccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIP-VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~-v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
++++ +++|++++++. ..+|+|+-.|.+..-.+.+..|++.|+++++-.. +.+.++..+|.++++++++.+.+..
T Consensus 47 ~~~~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~ 122 (344)
T 3ezy_A 47 LGVEKAYKDPHELIED----PNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGF 122 (344)
T ss_dssp HTCSEEESSHHHHHHC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred hCCCceeCCHHHHhcC----CCCCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEee
Confidence 3554 78999999974 3689999999999999999999999999999876 7888999999999999999888888
Q ss_pred ChhH--HHHHHHHHHHHHhhhcCCeEEEec
Q 027747 83 TLSI--GSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 83 NfSl--Gv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
|+-. .+..+.++++. ..+-++..++.
T Consensus 123 ~~R~~p~~~~~k~~i~~--G~iG~i~~~~~ 150 (344)
T 3ezy_A 123 NRRFDRNFKKLKEAVEN--GTIGKPHVLRI 150 (344)
T ss_dssp GGGGCHHHHHHHHHHHT--TTTSSEEEEEE
T ss_pred cccCCHHHHHHHHHHHc--CCCCCeEEEEE
Confidence 7643 33334444332 23344544444
No 46
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=96.81 E-value=0.0074 Score=52.93 Aligned_cols=98 Identities=11% Similarity=-0.011 Sum_probs=74.2
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceE-EEccC-
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGC-LIAPT- 83 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~v-v~spN- 83 (219)
+++++|+++++++ .++|+|+-.|.+..-.+.+..|++.|+++++=.. +.+.++.++|.++++++++.+ .+..|
T Consensus 52 ~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~ 127 (344)
T 3mz0_A 52 ATVYPNDDSLLAD----ENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMR 127 (344)
T ss_dssp CEEESSHHHHHHC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGG
T ss_pred CeeeCCHHHHhcC----CCCCEEEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEeccc
Confidence 6789999999974 3689999999999999999999999999998666 778888899999999998887 56666
Q ss_pred -hhHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 84 -LSIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 84 -fSlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
|.-.+..+.++++. ..+-++..+..
T Consensus 128 r~~p~~~~~k~~i~~--g~iG~i~~v~~ 153 (344)
T 3mz0_A 128 RYDSGYVQLKEALDN--HVIGEPLMIHC 153 (344)
T ss_dssp GGSHHHHHHHHHHHT--TTTSSEEEEEE
T ss_pred ccCHHHHHHHHHHHc--CCCCCcEEEEE
Confidence 44444444444432 12334444444
No 47
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=96.76 E-value=0.0062 Score=54.11 Aligned_cols=87 Identities=13% Similarity=0.061 Sum_probs=69.5
Q ss_pred Cccc-cccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIP-VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~-v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+|++ +++|++++|+. ...|+|+..|.+..-.+.+..|++.|+++++=- .+.+.++.++|.++++++++.+.+..
T Consensus 66 ~~~~~~~~~~~~ll~~----~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~v~~ 141 (383)
T 3oqb_A 66 FNIARWTTDLDAALAD----KNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHGTVQ 141 (383)
T ss_dssp TTCCCEESCHHHHHHC----SSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECC
T ss_pred hCCCcccCCHHHHhcC----CCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 5664 78999999984 368999999999999999999999999987532 36778889999999999999998888
Q ss_pred Ch--hHHHHHHHHHH
Q 027747 83 TL--SIGSILLQQAA 95 (219)
Q Consensus 83 Nf--SlGv~ll~~~~ 95 (219)
|+ .-.+..+.+++
T Consensus 142 ~~r~~p~~~~~~~~i 156 (383)
T 3oqb_A 142 DKLFLPGLKKIAFLR 156 (383)
T ss_dssp GGGGSHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHH
Confidence 84 44444444444
No 48
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*
Probab=96.76 E-value=0.00082 Score=59.88 Aligned_cols=85 Identities=15% Similarity=0.055 Sum_probs=67.5
Q ss_pred ccc---CHHHHHhcccCCCCCcEEEECCChh----hHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 9 VMS---DLTMVLGSISQSKARAVVIDFTDAS----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 9 v~~---~l~~~l~~~~~~~~~DVvIDFS~p~----~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+++ |+++++ . ...|||||.|.+. ...+.+..|+++|+++|+..-+...++.++|.++|+++++.+.+-
T Consensus 72 ~~~~~~d~~~ll-~----~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~e 146 (331)
T 3c8m_A 72 LEYESISASEAL-A----RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYE 146 (331)
T ss_dssp CCSEECCHHHHH-H----SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECG
T ss_pred ccCCCCCHHHHh-C----CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEE
Confidence 455 899998 4 4799999999774 778899999999999999766554567789999999999999998
Q ss_pred cChhHHHHHHHHHHHHH
Q 027747 82 PTLSIGSILLQQAAISA 98 (219)
Q Consensus 82 pNfSlGv~ll~~~~~~a 98 (219)
++..-|.-++..+-+.+
T Consensus 147 a~vg~giPii~~l~~~l 163 (331)
T 3c8m_A 147 ATVAGGVPLFSFIDYSV 163 (331)
T ss_dssp GGSSTTSCCHHHHHHHS
T ss_pred eecccccHHHHHHHHHh
Confidence 88888855555444333
No 49
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=96.68 E-value=0.00079 Score=62.70 Aligned_cols=86 Identities=14% Similarity=0.155 Sum_probs=70.7
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCCh-hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p-~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
+..+++|++++++. ...|+||+.|-+ +...+.+..|+++|+++|+...+++.++-++|.++|+++++.+.+-.+.
T Consensus 63 ~~~~~~d~~ell~d----~diDvVve~tp~~~~h~~~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V 138 (444)
T 3mtj_A 63 GLPLTTNPFDVVDD----PEIDIVVELIGGLEPARELVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAV 138 (444)
T ss_dssp TCCEESCTHHHHTC----TTCCEEEECCCSSTTHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGS
T ss_pred cCcccCCHHHHhcC----CCCCEEEEcCCCchHHHHHHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEee
Confidence 34678899999974 468999999985 8889999999999999999877777777889999999999999887776
Q ss_pred hHHHHHHHHHH
Q 027747 85 SIGSILLQQAA 95 (219)
Q Consensus 85 SlGv~ll~~~~ 95 (219)
.-|.-++..+-
T Consensus 139 ~~giPii~~Lr 149 (444)
T 3mtj_A 139 AGGIPIIKALR 149 (444)
T ss_dssp STTSCHHHHHH
T ss_pred eCChHHHHHHH
Confidence 66666554443
No 50
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=96.64 E-value=0.0065 Score=52.38 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=65.5
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe-cCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY-VPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG-TTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+|++.++|++++++ .+|+|+-.|.+..-.+.+..|++.|+++++= -.+.+.++.++|.++++++++.+.+.-|
T Consensus 52 ~~~~~~~~~~~ll~------~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~ 125 (308)
T 3uuw_A 52 YRIMPFDSIESLAK------KCDCIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMVGFN 125 (308)
T ss_dssp HTCCBCSCHHHHHT------TCSEEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECCG
T ss_pred cCCCCcCCHHHHHh------cCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence 46667899999996 6999999999999999999999999997765 4568888999999999999999888887
Q ss_pred hhH
Q 027747 84 LSI 86 (219)
Q Consensus 84 fSl 86 (219)
+-.
T Consensus 126 ~r~ 128 (308)
T 3uuw_A 126 RRF 128 (308)
T ss_dssp GGG
T ss_pred ccc
Confidence 644
No 51
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=96.55 E-value=0.0029 Score=49.49 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=63.1
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.|++++++++++-+ .+|++|=|..++.+.+.++.|.+.|+..|+-++|+.+ +++.++++++++.++ -||
T Consensus 56 ~G~~~~~sl~el~~------~vDlavi~vp~~~~~~v~~~~~~~gi~~i~~~~g~~~---~~~~~~a~~~Gir~v-gpn- 124 (140)
T 1iuk_A 56 FGEEAVASLLDLKE------PVDILDVFRPPSALMDHLPEVLALRPGLVWLQSGIRH---PEFEKALKEAGIPVV-ADR- 124 (140)
T ss_dssp TTEECBSSGGGCCS------CCSEEEECSCHHHHTTTHHHHHHHCCSCEEECTTCCC---HHHHHHHHHTTCCEE-ESC-
T ss_pred CCEEecCCHHHCCC------CCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcCCcCH---HHHHHHHHHcCCEEE-cCC-
Confidence 47889999998854 6899988999999999999999999999999999874 467778888888754 477
Q ss_pred hHHHHHH
Q 027747 85 SIGSILL 91 (219)
Q Consensus 85 SlGv~ll 91 (219)
++|+..-
T Consensus 125 c~g~~~~ 131 (140)
T 1iuk_A 125 CLMVEHK 131 (140)
T ss_dssp CHHHHHH
T ss_pred ccceECh
Confidence 7777553
No 52
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=96.54 E-value=0.013 Score=51.47 Aligned_cols=88 Identities=19% Similarity=0.130 Sum_probs=70.9
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
.++++++|++++++. .++|+|+-.|-+..-.+.+..|++.|+++++=- -..+.++.++|.++++++++.+.+..|
T Consensus 49 ~~~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~ 124 (345)
T 3f4l_A 49 SHIHFTSDLDEVLND----PDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQN 124 (345)
T ss_dssp TTCEEESCTHHHHTC----TTEEEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCG
T ss_pred CCCceECCHHHHhcC----CCCCEEEEcCChHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 367889999999973 358999999988888999999999999998743 256788888999999999999998888
Q ss_pred h--hHHHHHHHHHHH
Q 027747 84 L--SIGSILLQQAAI 96 (219)
Q Consensus 84 f--SlGv~ll~~~~~ 96 (219)
+ .-.+.-+.++++
T Consensus 125 ~r~~p~~~~~~~~i~ 139 (345)
T 3f4l_A 125 RRFDSCFLTAKKAIE 139 (345)
T ss_dssp GGGCHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHh
Confidence 5 445555555553
No 53
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=96.46 E-value=0.018 Score=50.95 Aligned_cols=98 Identities=14% Similarity=0.015 Sum_probs=75.4
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceE-EEccC-
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGC-LIAPT- 83 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~v-v~spN- 83 (219)
+++++|++++++. ..+|+|+-.|-+..-.+.+..|++.|+++++=.. ..+.++.++|.++++++++.+ .+..|
T Consensus 73 ~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~ 148 (357)
T 3ec7_A 73 AKDYNDYHDLIND----KDVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMR 148 (357)
T ss_dssp CEEESSHHHHHHC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGG
T ss_pred CeeeCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecc
Confidence 6789999999974 3689999999999999999999999999998766 678888899999999898877 46666
Q ss_pred -hhHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 84 -LSIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 84 -fSlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
|.-.+..+.++++. ..+-++..+..
T Consensus 149 R~~p~~~~~k~~i~~--g~iG~i~~v~~ 174 (357)
T 3ec7_A 149 RYDKGYVQLKNIIDS--GEIGQPLMVHG 174 (357)
T ss_dssp GGSHHHHHHHHHHHH--TTTCSEEEEEE
T ss_pred cCCHHHHHHHHHHhc--CCCCCeEEEEE
Confidence 55555555555543 22344444443
No 54
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=96.46 E-value=0.0092 Score=46.52 Aligned_cols=75 Identities=12% Similarity=0.112 Sum_probs=58.9
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.|++++++++++.+ .+|++|=+..++.+.+.++.|.+.|++.++--||-.. +++.++++++++.+ +-||
T Consensus 55 ~G~~~~~s~~el~~------~vDlvii~vp~~~v~~v~~~~~~~g~~~i~~~~~~~~---~~l~~~a~~~Gi~~-igpn- 123 (138)
T 1y81_A 55 EGLKCYRSVRELPK------DVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQPGAES---EEIRRFLEKAGVEY-SFGR- 123 (138)
T ss_dssp TTEECBSSGGGSCT------TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCC---HHHHHHHHHHTCEE-ECSC-
T ss_pred CCeeecCCHHHhCC------CCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcCccHH---HHHHHHHHHCCCEE-EcCC-
Confidence 47889999998865 6899998999999999999999999987766665432 46777788888884 5677
Q ss_pred hHHHHH
Q 027747 85 SIGSIL 90 (219)
Q Consensus 85 SlGv~l 90 (219)
++|+..
T Consensus 124 c~g~~~ 129 (138)
T 1y81_A 124 CIMVET 129 (138)
T ss_dssp CHHHHC
T ss_pred cceEEc
Confidence 677654
No 55
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=96.40 E-value=0.013 Score=51.50 Aligned_cols=86 Identities=14% Similarity=0.070 Sum_probs=69.0
Q ss_pred cc-ccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccC
Q 027747 6 EI-PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 6 ~~-~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
|+ ++++|++++|++ ..+|+|+-.|.+..-.+.+..|++.|+++++=-. ..+.++.++|.++++++++.+....|
T Consensus 66 ~~~~~~~~~~~ll~~----~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~ 141 (340)
T 1zh8_A 66 GNPAVFDSYEELLES----GLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAEN 141 (340)
T ss_dssp SSCEEESCHHHHHHS----SCCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECG
T ss_pred CCCcccCCHHHHhcC----CCCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEec
Confidence 44 679999999974 3689999999888889999999999999988764 57888889999999999998888777
Q ss_pred hhH--HHHHHHHHH
Q 027747 84 LSI--GSILLQQAA 95 (219)
Q Consensus 84 fSl--Gv~ll~~~~ 95 (219)
+-. .+..+.+++
T Consensus 142 ~R~~p~~~~~k~~i 155 (340)
T 1zh8_A 142 FRHVPAFWKAKELV 155 (340)
T ss_dssp GGGCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHH
Confidence 643 333344444
No 56
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=96.34 E-value=0.03 Score=48.83 Aligned_cols=100 Identities=11% Similarity=-0.013 Sum_probs=75.3
Q ss_pred Ccc-ccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEI-PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~-~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+|+ .+++|+++++++ ..+|+|+-.|.+..-.+.+..|++.|+++++=-. ..+.++.++|.++++++++.+..+.
T Consensus 49 ~~~~~~~~~~~~ll~~----~~vD~V~i~tp~~~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~ 124 (334)
T 3ohs_X 49 HDIPKAYGSYEELAKD----PNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAI 124 (334)
T ss_dssp HTCSCEESSHHHHHHC----TTCCEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCcccCCHHHHhcC----CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 455 478999999974 3699999999999999999999999999887654 5778888999999999999888887
Q ss_pred Ch--hHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 83 TL--SIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 83 Nf--SlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
|+ .-.+..+.++++. ..+-++.-++.
T Consensus 125 ~~r~~p~~~~~k~~i~~--g~iG~i~~v~~ 152 (334)
T 3ohs_X 125 WTRFFPASEALRSVLAQ--GTLGDLRVARA 152 (334)
T ss_dssp GGGGSHHHHHHHHHHHH--TTTCSEEEEEE
T ss_pred hHhcCHHHHHHHHHHhc--CCCCCeEEEEE
Confidence 74 4445455555442 22334444444
No 57
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=96.34 E-value=0.011 Score=52.39 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=67.1
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccCh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
++++++|+++++++ .++|+|+-.|.+..-.+.+..|++.|+++++=-. ..+.++.++|.++++++++.+.+..|+
T Consensus 53 ~~~~~~~~~~ll~~----~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~ 128 (359)
T 3m2t_A 53 DIPVLDNVPAMLNQ----VPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVGMNF 128 (359)
T ss_dssp SCCEESSHHHHHHH----SCCSEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred CCcccCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence 46789999999984 3579999999999999999999999999887554 677888899999999999999888886
Q ss_pred hHHH
Q 027747 85 SIGS 88 (219)
Q Consensus 85 SlGv 88 (219)
-..-
T Consensus 129 R~~p 132 (359)
T 3m2t_A 129 KFAR 132 (359)
T ss_dssp HHCH
T ss_pred cCcH
Confidence 5543
No 58
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=96.27 E-value=0.032 Score=49.52 Aligned_cols=85 Identities=9% Similarity=0.073 Sum_probs=68.8
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccChh
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
+++++|++++|++ ..+|+|+-.|-+..=.+.+..|++.|+++++=-. ..+.++.++|.++++++++.+.+..|+-
T Consensus 74 ~~~~~~~~~ll~~----~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R 149 (361)
T 3u3x_A 74 ARRIATAEEILED----ENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEH 149 (361)
T ss_dssp CCEESCHHHHHTC----TTCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHH
T ss_pred CcccCCHHHHhcC----CCCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHh
Confidence 5689999999974 3689999899888889999999999999998544 5678888999999999999999888864
Q ss_pred H---HHHHHHHHH
Q 027747 86 I---GSILLQQAA 95 (219)
Q Consensus 86 l---Gv~ll~~~~ 95 (219)
. .+..+.+++
T Consensus 150 ~~~p~~~~~k~~i 162 (361)
T 3u3x_A 150 FESPATVKAGELV 162 (361)
T ss_dssp HTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH
Confidence 4 344444444
No 59
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=96.18 E-value=0.018 Score=52.57 Aligned_cols=85 Identities=11% Similarity=0.050 Sum_probs=68.7
Q ss_pred ccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcC------CcEEEec-CCCChhhHHHHHHHhhccCceEEE
Q 027747 8 PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYV-PHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 8 ~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g------~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
.+++|++++|++ ..+|+|+-.|-+..-.+.+..|++.| +++++-- .+.+.++.++|.++++++++.+.+
T Consensus 76 ~~~~~~~~ll~~----~~vD~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 151 (438)
T 3btv_A 76 TAFPTLESFASS----STIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTII 151 (438)
T ss_dssp EEESSHHHHHHC----SSCSEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEE
T ss_pred eeeCCHHHHhcC----CCCCEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEE
Confidence 388999999973 36899999999999999999999999 9999884 578888889999999988888887
Q ss_pred ccCh--hHHHHHHHHHHH
Q 027747 81 APTL--SIGSILLQQAAI 96 (219)
Q Consensus 81 spNf--SlGv~ll~~~~~ 96 (219)
..|+ .-++..+.++++
T Consensus 152 ~~~~R~~p~~~~~k~~i~ 169 (438)
T 3btv_A 152 SLQGRKSPYILRAKELIS 169 (438)
T ss_dssp ECGGGGCHHHHHHHHHHH
T ss_pred ecccccCHHHHHHHHHHH
Confidence 7664 344444455444
No 60
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=96.11 E-value=0.026 Score=49.20 Aligned_cols=87 Identities=8% Similarity=0.043 Sum_probs=69.8
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
++++++|++++|++ ..+|+|+-.|.+..-.+.+..|++.|+++++=- ...+.++.++|.++++++++.+...-|+
T Consensus 51 ~~~~~~~~~~ll~~----~~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~ 126 (336)
T 2p2s_A 51 SVPFAASAEQLITD----ASIDLIACAVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFAVYFNE 126 (336)
T ss_dssp TCCBCSCHHHHHTC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEEECCTT
T ss_pred CCcccCCHHHHhhC----CCCCEEEEeCChhhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeecc
Confidence 56789999999973 368999999988888999999999999988864 4577888889999999999988887776
Q ss_pred hH--H-HHHHHHHHH
Q 027747 85 SI--G-SILLQQAAI 96 (219)
Q Consensus 85 Sl--G-v~ll~~~~~ 96 (219)
-. . +..+.++++
T Consensus 127 R~~p~~~~~~~~~i~ 141 (336)
T 2p2s_A 127 RINVDSALFAGELVQ 141 (336)
T ss_dssp TTTCHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHh
Confidence 43 2 555555544
No 61
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=96.06 E-value=0.024 Score=48.92 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=66.0
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEEEccC
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
.|++ +.|+++++++ ..+|+|+-.|-+..-.+.+..|++.|+++++=- -..+.++.++|.++++++++.+..+.|
T Consensus 50 ~g~~-~~~~~ell~~----~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~ 124 (294)
T 1lc0_A 50 DEVR-QISLEDALRS----QEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHV 124 (294)
T ss_dssp TTEE-BCCHHHHHHC----SSEEEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECG
T ss_pred cCCC-CCCHHHHhcC----CCCCEEEEeCCcHhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEh
Confidence 3555 5799999973 368999999999999999999999999998864 356788889999999999999999888
Q ss_pred hhHHH
Q 027747 84 LSIGS 88 (219)
Q Consensus 84 fSlGv 88 (219)
+-..-
T Consensus 125 ~r~~p 129 (294)
T 1lc0_A 125 ELLME 129 (294)
T ss_dssp GGGSH
T ss_pred HhccH
Confidence 76554
No 62
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=95.97 E-value=0.022 Score=53.44 Aligned_cols=76 Identities=8% Similarity=0.078 Sum_probs=64.3
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.++||+....++.+. ...+|+.|=|..++.+.+.++.|.+.|+++||=|.||..+...+|.++++++++. ++-||-
T Consensus 19 ~~~Pv~~~~~~~~~~---p~~~DlavI~vPa~~v~~~v~e~~~~Gv~~viis~Gf~~~~~~~l~~~A~~~g~r-liGPNc 94 (480)
T 3dmy_A 19 QALTQVRRWDSACQK---LPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLL-VMGPDC 94 (480)
T ss_dssp -CCEEESSHHHHHHH---STTCCEEEECSCHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHHTTCC-EECSSC
T ss_pred CCCcccchHHHHHhc---CCCCCEEEEecCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHHHHHcCCE-EEecCc
Confidence 368898888887653 2368999999999999999999999999988888999987778899999888776 467887
No 63
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=95.86 E-value=0.036 Score=48.29 Aligned_cols=81 Identities=10% Similarity=0.135 Sum_probs=65.2
Q ss_pred ccccccCHHHHHhccc----CCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEE
Q 027747 6 EIPVMSDLTMVLGSIS----QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~----~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
++++++|++++++... +...+|+|+-.|-+..=.+.+..|++.|+++++=-. ..+.++.++|.++++++++.+..
T Consensus 49 ~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v 128 (312)
T 3o9z_A 49 EAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYT 128 (312)
T ss_dssp TCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEE
T ss_pred CCceeCCHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 5678899999982000 014799999999999999999999999999887544 56788889999999999999888
Q ss_pred ccChhH
Q 027747 81 APTLSI 86 (219)
Q Consensus 81 spNfSl 86 (219)
..|+-.
T Consensus 129 ~~~~R~ 134 (312)
T 3o9z_A 129 VLQLRV 134 (312)
T ss_dssp CCGGGG
T ss_pred Eeehhc
Confidence 888644
No 64
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=95.78 E-value=0.06 Score=49.07 Aligned_cols=98 Identities=11% Similarity=0.000 Sum_probs=70.9
Q ss_pred ccccc----CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEEEc
Q 027747 7 IPVMS----DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 7 ~~v~~----~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+++++ |++++|++ ..+|+|+-.|-+..-.+.+..|++.|+++++=- ...+.++.++|.++++++++.+.+.
T Consensus 73 ~~~~~~~~~~~~~ll~~----~~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v~ 148 (444)
T 2ixa_A 73 AKVFGNGNDDYKNMLKD----KNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLMAL 148 (444)
T ss_dssp CEEECSSTTTHHHHTTC----TTCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEEEC
T ss_pred CceeccCCCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEE
Confidence 56787 99999973 368999999999999999999999999988743 2456788889999999999888887
Q ss_pred cCh--hHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 82 PTL--SIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 82 pNf--SlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
.|+ .-+...+.++++. ..+=++.-++.
T Consensus 149 ~~~r~~p~~~~~~~~i~~--G~iG~i~~v~~ 177 (444)
T 2ixa_A 149 ENVCYRRDVMAILNMVRK--GMFGELVHGTG 177 (444)
T ss_dssp CGGGGCHHHHHHHHHHHT--TTTCSEEEEEE
T ss_pred eccccCHHHHHHHHHHHc--CCCCCeEEEEE
Confidence 764 3343333333321 12334544443
No 65
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=95.71 E-value=0.013 Score=54.30 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=56.4
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEE-ecCCCCh--h----hHHHHHHHhhccCce
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVV-YVPHIQL--E----TVSALSAFCDKASMG 77 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~Vi-GTTG~~~--~----~~~~l~~~a~~~~~~ 77 (219)
.|++++++++++.+ .+|++|=|..|+.+.+.++.|.+.|++.|+ =|.||.+ + ..+++.++++++++.
T Consensus 50 ~G~~~y~sl~~lp~------~~Dlavi~vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~ 123 (457)
T 2csu_A 50 QGVKAYKSVKDIPD------EIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMR 123 (457)
T ss_dssp TTEECBSSTTSCSS------CCSEEEECSCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCE
T ss_pred CCEeccCCHHHcCC------CCCEEEEecCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCE
Confidence 58899999998864 689888899999999999999999999655 5668854 1 146788888888887
Q ss_pred EE
Q 027747 78 CL 79 (219)
Q Consensus 78 vv 79 (219)
++
T Consensus 124 vi 125 (457)
T 2csu_A 124 II 125 (457)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 66
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=95.64 E-value=0.028 Score=50.92 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=65.4
Q ss_pred ccccCHHHHHhccc-CCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccChh
Q 027747 8 PVMSDLTMVLGSIS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 8 ~v~~~l~~~l~~~~-~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
.+++|++++|+... ....+|+|+-.|.+..=.+.+..|++.|+++++=-. ..+.++.++|.++++++++.+.+..|+-
T Consensus 92 ~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R 171 (417)
T 3v5n_A 92 RVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLTHNYT 171 (417)
T ss_dssp GBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEECGGG
T ss_pred cccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 58999999997300 002489999999999999999999999999887654 5678888999999999999999988875
Q ss_pred HH
Q 027747 86 IG 87 (219)
Q Consensus 86 lG 87 (219)
.-
T Consensus 172 ~~ 173 (417)
T 3v5n_A 172 GY 173 (417)
T ss_dssp GS
T ss_pred CC
Confidence 43
No 67
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=95.60 E-value=0.049 Score=47.57 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=65.7
Q ss_pred ccccccCHHHHHhccc-----CCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEE
Q 027747 6 EIPVMSDLTMVLGSIS-----QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~-----~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv 79 (219)
++++++|++++++... +....|+|+-.|-+..=.+.+..|++.|+++++=-. ..+.++.++|.++++++++.+.
T Consensus 49 ~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 128 (318)
T 3oa2_A 49 QSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLY 128 (318)
T ss_dssp TCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred CCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 5678999999983000 014699999999999999999999999999988765 6788888999999999999888
Q ss_pred EccChhH
Q 027747 80 IAPTLSI 86 (219)
Q Consensus 80 ~spNfSl 86 (219)
...|+-.
T Consensus 129 v~~~~R~ 135 (318)
T 3oa2_A 129 NILQLRH 135 (318)
T ss_dssp ECCGGGG
T ss_pred EEEhhhc
Confidence 8887543
No 68
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=95.57 E-value=0.039 Score=48.12 Aligned_cols=88 Identities=15% Similarity=0.065 Sum_probs=68.8
Q ss_pred Cccc-cccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIP-VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~-v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+|++ +++|++++|++ ..+|+|+=.|-+..=.+.+..|+++|+++.+=-. +.+.++.++|.++++++++.+.+..
T Consensus 69 ~g~~~~y~d~~ell~~----~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~ 144 (350)
T 4had_A 69 FSVPHAFGSYEEMLAS----DVIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAY 144 (350)
T ss_dssp HTCSEEESSHHHHHHC----SSCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECC
T ss_pred cCCCeeeCCHHHHhcC----CCCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEee
Confidence 4554 79999999974 4689888888888889999999999999887433 4567778899999999999999988
Q ss_pred Chh--HHHHHHHHHHH
Q 027747 83 TLS--IGSILLQQAAI 96 (219)
Q Consensus 83 NfS--lGv~ll~~~~~ 96 (219)
|+- -.+..+.++++
T Consensus 145 ~~R~~p~~~~~k~~i~ 160 (350)
T 4had_A 145 MITYSPVWQKVRSLID 160 (350)
T ss_dssp GGGGSHHHHHHHHHHH
T ss_pred eeecCHHHHHhhHhhh
Confidence 854 44444445443
No 69
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=95.55 E-value=0.055 Score=46.87 Aligned_cols=88 Identities=9% Similarity=-0.041 Sum_probs=66.1
Q ss_pred Ccccc-ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIPV-MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~v-~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+|++. +.+..+.|+ ..+|+|+-.|.|..-.+.+..|++.|+++++-. ...+.++.++|.++++++++.+....
T Consensus 47 ~g~~~~~~~~~~~l~-----~~~D~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~ 121 (323)
T 1xea_A 47 YRVSATCTDYRDVLQ-----YGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGF 121 (323)
T ss_dssp TTCCCCCSSTTGGGG-----GCCSEEEECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCCCccccCHHHHhh-----cCCCEEEEECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEee
Confidence 34443 334444553 269999999999999999999999999998864 46778888899999999999888877
Q ss_pred Ch--hHHHHHHHHHHHH
Q 027747 83 TL--SIGSILLQQAAIS 97 (219)
Q Consensus 83 Nf--SlGv~ll~~~~~~ 97 (219)
|+ .-.+..+.++++.
T Consensus 122 ~~r~~p~~~~~~~~i~~ 138 (323)
T 1xea_A 122 NRRHIPLYNQHLSELAQ 138 (323)
T ss_dssp GGGCCHHHHHHCHHHHH
T ss_pred ccccCHHHHHHHHHHhc
Confidence 64 4555555555544
No 70
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=95.30 E-value=0.028 Score=43.95 Aligned_cols=75 Identities=13% Similarity=0.128 Sum_probs=58.5
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.|++++++++++.. .+|++|=|+.|+.+.+.++.|.+.|+..|+-.+|-.. +++.++++++++.+ +-||
T Consensus 56 ~G~~~~~sl~el~~------~~Dlvii~vp~~~v~~v~~~~~~~g~~~i~i~~~~~~---~~l~~~a~~~Gi~~-igpn- 124 (145)
T 2duw_A 56 LGQQGYATLADVPE------KVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQLGVIN---EQAAVLAREAGLSV-VMDR- 124 (145)
T ss_dssp TTEECCSSTTTCSS------CCSEEECCSCSTHHHHHHHHHHHHTCCEEECCTTCCC---HHHHHHHHTTTCEE-ECSC-
T ss_pred CCeeccCCHHHcCC------CCCEEEEEeCHHHHHHHHHHHHHcCCCEEEEcCChHH---HHHHHHHHHcCCEE-EcCC-
Confidence 47888999988864 6899988999999999999999999877776666432 46777787787765 4577
Q ss_pred hHHHHH
Q 027747 85 SIGSIL 90 (219)
Q Consensus 85 SlGv~l 90 (219)
++|+..
T Consensus 125 c~g~~~ 130 (145)
T 2duw_A 125 CPAIEL 130 (145)
T ss_dssp CHHHHS
T ss_pred eeeEEc
Confidence 777754
No 71
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=95.26 E-value=0.024 Score=51.37 Aligned_cols=93 Identities=8% Similarity=0.102 Sum_probs=67.8
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChh--------hHHHHHHHhhccCceEEEcc
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE--------TVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~--------~~~~l~~~a~~~~~~vv~sp 82 (219)
++++++++.. ++|+||..+-|..-...++.|++.|+++|. ||++.+. +...+.+.++++++.++..+
T Consensus 66 ~~l~~~l~~~----~~DvVin~ag~~~~~~v~~a~l~~g~~vvD-~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~ 140 (405)
T 4ina_A 66 EELVALINEV----KPQIVLNIALPYQDLTIMEACLRTGVPYLD-TANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGS 140 (405)
T ss_dssp HHHHHHHHHH----CCSEEEECSCGGGHHHHHHHHHHHTCCEEE-SSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECC
T ss_pred HHHHHHHHhh----CCCEEEECCCcccChHHHHHHHHhCCCEEE-ecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcC
Confidence 3566666531 489999999998888899999999999887 7675432 22367777888999999999
Q ss_pred ChhHHHHHHHHHHHHHhh-hcCCeEEEec
Q 027747 83 TLSIGSILLQQAAISASF-HYKNVEIVES 110 (219)
Q Consensus 83 NfSlGv~ll~~~~~~aa~-~~~dieIiE~ 110 (219)
.|.-|+..+ ++..+++ .+.+++.+++
T Consensus 141 G~~PG~~~l--~a~~~~~~~~~~i~~i~i 167 (405)
T 4ina_A 141 GFDPGVTNV--FCAYAQKHYFDEIHEIDI 167 (405)
T ss_dssp BTTTBHHHH--HHHHHHHHTCSEEEEEEE
T ss_pred CCCccHHHH--HHHHHHHhccCcccEEEE
Confidence 999887554 3444555 4666666664
No 72
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=95.24 E-value=0.06 Score=48.19 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=65.7
Q ss_pred Ccc---ccccCHHHHHhccc-CCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec-CCCChhhHHHHHHHhhccCceEE
Q 027747 5 LEI---PVMSDLTMVLGSIS-QSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV-PHIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 5 ~~~---~v~~~l~~~l~~~~-~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv 79 (219)
+|+ .+++|++++|+... ....+|+|+-.|.+..=.+.+..|++.|+++++=- -..+.++.++|.++++++++.+.
T Consensus 61 ~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 140 (398)
T 3dty_A 61 LGVDSERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVG 140 (398)
T ss_dssp TTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred hCCCcceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 456 68999999997310 00248999999999999999999999999988732 24567888899999999999999
Q ss_pred EccChhHH
Q 027747 80 IAPTLSIG 87 (219)
Q Consensus 80 ~spNfSlG 87 (219)
+..|+-.-
T Consensus 141 v~~~~r~~ 148 (398)
T 3dty_A 141 VTYGYAGH 148 (398)
T ss_dssp ECCGGGGS
T ss_pred EEecccCC
Confidence 88887543
No 73
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=95.22 E-value=0.077 Score=49.20 Aligned_cols=85 Identities=9% Similarity=0.018 Sum_probs=67.4
Q ss_pred ccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcC------CcEEEec-CCCChhhHHHHHHHhhccC-ceEE
Q 027747 8 PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFG------MRSVVYV-PHIQLETVSALSAFCDKAS-MGCL 79 (219)
Q Consensus 8 ~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g------~p~ViGT-TG~~~~~~~~l~~~a~~~~-~~vv 79 (219)
.+++|++++|++ ..+|+|+-.|-+..-.+.+..|++.| +++++=- ...+.++.++|.+++++++ +.+.
T Consensus 95 ~~~~d~~ell~~----~~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~ 170 (479)
T 2nvw_A 95 TGFDSLESFAQY----KDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTI 170 (479)
T ss_dssp EEESCHHHHHHC----TTCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEE
T ss_pred eeeCCHHHHhcC----CCCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 389999999973 36899999999998899999999999 9988865 3577788889999999888 8888
Q ss_pred EccChh--HHHHHHHHHHH
Q 027747 80 IAPTLS--IGSILLQQAAI 96 (219)
Q Consensus 80 ~spNfS--lGv~ll~~~~~ 96 (219)
+..|+- -.+..+.++++
T Consensus 171 v~~~~R~~p~~~~~k~~i~ 189 (479)
T 2nvw_A 171 ICLQGRKSPYIVRAKELIS 189 (479)
T ss_dssp EECGGGGCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHHHH
Confidence 877754 34444444443
No 74
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=95.20 E-value=0.054 Score=47.30 Aligned_cols=86 Identities=9% Similarity=-0.021 Sum_probs=65.2
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCce--EEEccC
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMG--CLIAPT 83 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~--vv~spN 83 (219)
.++++|++++|++ .++|+|+-.|.+..=.+.+..|++.|+++++=-. ..+.++.++|.++++++++. +....|
T Consensus 53 ~~~~~~~~~ll~~----~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~ 128 (337)
T 3ip3_A 53 PKKYNNWWEMLEK----EKPDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFG 128 (337)
T ss_dssp CEECSSHHHHHHH----HCCSEEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCG
T ss_pred CcccCCHHHHhcC----CCCCEEEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEeccc
Confidence 4789999999984 3689999899888889999999999999776322 56678888999999999888 555555
Q ss_pred h--hHHHHHHHHHHH
Q 027747 84 L--SIGSILLQQAAI 96 (219)
Q Consensus 84 f--SlGv~ll~~~~~ 96 (219)
+ +-.+..+.++++
T Consensus 129 ~R~~p~~~~~k~~i~ 143 (337)
T 3ip3_A 129 IRYRPHFLTAKKLVS 143 (337)
T ss_dssp GGGSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHh
Confidence 3 334444444443
No 75
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=95.17 E-value=0.086 Score=46.00 Aligned_cols=78 Identities=10% Similarity=0.010 Sum_probs=64.9
Q ss_pred Cccc-cccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEIP-VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~~-v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+|++ +++|++++|++ .++|+|+=.|-+..=.+.+..|++.|+++.+=-. ..+.++-++|.++++++++.+.+..
T Consensus 77 ~g~~~~y~d~~ell~~----~~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~ 152 (393)
T 4fb5_A 77 FGFEKATADWRALIAD----PEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAALGY 152 (393)
T ss_dssp HTCSEEESCHHHHHHC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECC
T ss_pred hCCCeecCCHHHHhcC----CCCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCcccccc
Confidence 4554 79999999974 4689888888888889999999999999887543 5667888899999999999999998
Q ss_pred ChhH
Q 027747 83 TLSI 86 (219)
Q Consensus 83 NfSl 86 (219)
|+-.
T Consensus 153 ~~R~ 156 (393)
T 4fb5_A 153 NYIQ 156 (393)
T ss_dssp GGGG
T ss_pred cccc
Confidence 8654
No 76
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=95.14 E-value=0.039 Score=49.80 Aligned_cols=75 Identities=12% Similarity=0.197 Sum_probs=60.4
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECCChh----hHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEE
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFTDAS----TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~----~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv 79 (219)
.+|++.++|++++++ .+|+++=.|-.. .-.+.++.|++.|+++++=-. ++.++.++|.++|+++++.+.
T Consensus 51 ~~gv~~~~~~~~l~~------~~D~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKP-l~~~ea~~l~~~A~~~g~~~~ 123 (372)
T 4gmf_A 51 AFGIPLYTSPEQITG------MPDIACIVVRSTVAGGAGTQLARHFLARGVHVIQEHP-LHPDDISSLQTLAQEQGCCYW 123 (372)
T ss_dssp HTTCCEESSGGGCCS------CCSEEEECCC--CTTSHHHHHHHHHHHTTCEEEEESC-CCHHHHHHHHHHHHHHTCCEE
T ss_pred HhCCCEECCHHHHhc------CCCEEEEECCCcccchhHHHHHHHHHHcCCcEEEecC-CCHHHHHHHHHHHHHcCCEEE
Confidence 468899999999986 588655444222 226889999999999998777 788899999999999999999
Q ss_pred EccChh
Q 027747 80 IAPTLS 85 (219)
Q Consensus 80 ~spNfS 85 (219)
+..|+-
T Consensus 124 v~~~yr 129 (372)
T 4gmf_A 124 INTFYP 129 (372)
T ss_dssp EECSGG
T ss_pred EcCccc
Confidence 988774
No 77
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=94.86 E-value=0.1 Score=46.75 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=69.1
Q ss_pred Ccc-ccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEcc
Q 027747 5 LEI-PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 5 ~~~-~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+|+ ++++|++++|++ .++|+|+-.|-+..=.+.+..|++.|+++.+=-. ..+.++-++|.++++++++.+.+..
T Consensus 79 ~~~~~~y~d~~~ll~~----~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~ 154 (412)
T 4gqa_A 79 LGAEKAYGDWRELVND----PQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAF 154 (412)
T ss_dssp HTCSEEESSHHHHHHC----TTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cCCCeEECCHHHHhcC----CCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeeecc
Confidence 345 478999999974 4689998899888889999999999999887544 5677888899999999999999888
Q ss_pred ChhH--HHHHHHHHHH
Q 027747 83 TLSI--GSILLQQAAI 96 (219)
Q Consensus 83 NfSl--Gv~ll~~~~~ 96 (219)
|+-. .+..+.++++
T Consensus 155 ~~R~~p~~~~~k~~i~ 170 (412)
T 4gqa_A 155 NNIKTPAALLAKQIIA 170 (412)
T ss_dssp GGGTSHHHHHHHHHHH
T ss_pred ceecCHHHHHHHHHHh
Confidence 8644 3333444443
No 78
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=94.59 E-value=0.076 Score=47.88 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=55.5
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECC------ChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCce
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS------~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~ 77 (219)
+.|++|++|+++++.. .||++|==. .|+...+.++.|+++|+.+|.|---+ ..+.++|.++|+++++-
T Consensus 73 ~~gipv~~d~~~al~~-----~~d~lvig~a~~gg~l~~~~~~~I~~Al~~G~nVvsglh~~-l~~~pel~~~A~~~Gv~ 146 (350)
T 2g0t_A 73 RYDVPVVSSVEKAKEM-----GAEVLIIGVSNPGGYLEEQIATLVKKALSLGMDVISGLHFK-ISQQTEFLKIAHENGTR 146 (350)
T ss_dssp CSCCBEESSHHHHHHT-----TCCEEEECCCSCCHHHHHHHHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHTCC
T ss_pred CCCceeeCCHHHHHhc-----CCCEEEEEecCCCCCCCHHHHHHHHHHHHcCCcEEeCChhh-hhCCHHHHHHHHHCCCE
Confidence 4689999999999973 699777443 45677799999999999999998776 44557788888877666
Q ss_pred EEEc
Q 027747 78 CLIA 81 (219)
Q Consensus 78 vv~s 81 (219)
++-.
T Consensus 147 i~dv 150 (350)
T 2g0t_A 147 IIDI 150 (350)
T ss_dssp EEES
T ss_pred EEEe
Confidence 6554
No 79
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*
Probab=93.21 E-value=0.1 Score=46.81 Aligned_cols=81 Identities=17% Similarity=0.078 Sum_probs=55.5
Q ss_pred ccccccCHHHHHhcc--------------cCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec---CCCChhhHHHHH
Q 027747 6 EIPVMSDLTMVLGSI--------------SQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV---PHIQLETVSALS 68 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~--------------~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT---TG~~~~~~~~l~ 68 (219)
|++.++++++++..- .....+|||||.|...........|+++|+++|+.- -..+.++.++|.
T Consensus 51 gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~ 130 (358)
T 1ebf_A 51 PLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALF 130 (358)
T ss_dssp CCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHT
T ss_pred CCCccccHHHHHhcccCCCCCHHHHHHHhhhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHH
Confidence 555556777777531 001124899999965544555578999999999833 234446778899
Q ss_pred HHhhccCceEEEccChhHH
Q 027747 69 AFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 69 ~~a~~~~~~vv~spNfSlG 87 (219)
+|+++++.+.+-.+..-|
T Consensus 131 -~A~~~gv~~~~Ea~vg~g 148 (358)
T 1ebf_A 131 -SNKPTNGFVYHEATVGAG 148 (358)
T ss_dssp -CCCTTCCCEECGGGTTTT
T ss_pred -HHHHcCCEEEEccccccC
Confidence 998888888887666666
No 80
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}
Probab=92.74 E-value=0.036 Score=49.46 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=57.2
Q ss_pred cccCHHHHHhcccCCCCCcEEEECCChh-hHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHH
Q 027747 9 VMSDLTMVLGSISQSKARAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 9 v~~~l~~~l~~~~~~~~~DVvIDFS~p~-~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
+++|+++++ ..|||||.|... ...+.++.|+++|+++|+..-....++.++|.++|+++ .+++.++..-|
T Consensus 57 ~~~d~~~ll-------~iDvVve~t~~~~~a~~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~--~~~~Ea~vg~g 127 (332)
T 2ejw_A 57 LRAEPFDLL-------EADLVVEAMGGVEAPLRLVLPALEAGIPLITANKALLAEAWESLRPFAEEG--LIYHEASVMAG 127 (332)
T ss_dssp EESSCCCCT-------TCSEEEECCCCSHHHHHHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT--CEECGGGTTTT
T ss_pred ccCCHHHHh-------CCCEEEECCCCcHHHHHHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC--CeEEEEEcccC
Confidence 455666665 489999999754 56789999999999999964444446778899998765 88888777777
Q ss_pred HHHHHHH
Q 027747 88 SILLQQA 94 (219)
Q Consensus 88 v~ll~~~ 94 (219)
+-++..+
T Consensus 128 iPii~~l 134 (332)
T 2ejw_A 128 TPALSFL 134 (332)
T ss_dssp SSSHHHH
T ss_pred CHHHHHH
Confidence 5444433
No 81
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=92.71 E-value=0.24 Score=44.29 Aligned_cols=89 Identities=15% Similarity=0.042 Sum_probs=62.5
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHH
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSIL 90 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~l 90 (219)
.++++++. .+|+||.-+.+..-...++.|++.|+.+|. ++.. .++...|.+.++++++.++....|.-|+.-
T Consensus 69 ~~l~~ll~------~~DvVIn~~P~~~~~~v~~a~l~~G~~~vD-~s~~-~~~~~~l~~~Ak~aG~~~l~g~G~dPG~~~ 140 (365)
T 2z2v_A 69 DKLVEVMK------EFELVIGALPGFLGFKSIKAAIKSKVDMVD-VSFM-PENPLELRDEAEKAQVTIVFDAGFAPGLSN 140 (365)
T ss_dssp HHHHHHHT------TCSCEEECCCHHHHHHHHHHHHHTTCCEEE-CCCC-SSCGGGGHHHHHHTTCEEECSCBTTTBHHH
T ss_pred HHHHHHHh------CCCEEEECCChhhhHHHHHHHHHhCCeEEE-ccCC-cHHHHHHHHHHHHcCCEEEECCCCcchHHH
Confidence 35666664 699999987766667788999999999886 4433 334456777788899999988888888754
Q ss_pred HHHHHHHHhhhcCCeEEEec
Q 027747 91 LQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 91 l~~~~~~aa~~~~dieIiE~ 110 (219)
+. +..+++.+. ++-+++
T Consensus 141 ~~--a~~~~~~~~-v~~i~~ 157 (365)
T 2z2v_A 141 IL--MGRIFQELD-LKEGYI 157 (365)
T ss_dssp HH--HHHHHHHSC-EEEEEE
T ss_pred HH--HHHHHHhcC-CCEEEE
Confidence 32 333444454 666665
No 82
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=91.46 E-value=0.9 Score=39.32 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=59.5
Q ss_pred Ccc-ccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC-CCChhhHHHHHHH---hhccCceEE
Q 027747 5 LEI-PVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP-HIQLETVSALSAF---CDKASMGCL 79 (219)
Q Consensus 5 ~~~-~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~---a~~~~~~vv 79 (219)
+|+ .+++|++++|++ .+.|+|+=.|-+..=.+.+..|++.|+++.+=-. +.+.++-++|.++ ++++++.+.
T Consensus 58 ~g~~~~~~d~~~ll~~----~~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~ 133 (390)
T 4h3v_A 58 LGWSTTETDWRTLLER----DDVQLVDVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSM 133 (390)
T ss_dssp HTCSEEESCHHHHTTC----TTCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCcccCCHHHHhcC----CCCCEEEEeCChHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCceE
Confidence 344 478999999974 4689888888888888999999999999887433 4556666777555 656788888
Q ss_pred EccChhH
Q 027747 80 IAPTLSI 86 (219)
Q Consensus 80 ~spNfSl 86 (219)
+..|+-.
T Consensus 134 v~~~~R~ 140 (390)
T 4h3v_A 134 VGFTYRR 140 (390)
T ss_dssp EECGGGG
T ss_pred EEeeecc
Confidence 8888643
No 83
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=91.33 E-value=0.22 Score=44.01 Aligned_cols=74 Identities=15% Similarity=0.029 Sum_probs=58.0
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY 102 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~ 102 (219)
++|+||.-.-|..-...++.|++.|+++|- +|+ ..+....|.+.++++++.++...=|.-|+.-+. +..+.+.+
T Consensus 77 ~~DvVi~~~p~~~~~~v~~~~~~~g~~yvD-~s~-~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~~~~--a~~~~~~~ 150 (365)
T 3abi_A 77 EFELVIGALPGFLGFKSIKAAIKSKVDMVD-VSF-MPENPLELRDEAEKAQVTIVFDAGFAPGLSNIL--MGRIFQEL 150 (365)
T ss_dssp TCSEEEECCCGGGHHHHHHHHHHHTCEEEE-CCC-CSSCGGGGHHHHHHTTCEEECCCBTTTBHHHHH--HHHHHHHS
T ss_pred CCCEEEEecCCcccchHHHHHHhcCcceEe-eec-cchhhhhhhhhhccCCceeeecCCCCCchHHHH--HHHHHHhc
Confidence 689999998888778999999999999886 554 445556788888899999999999998875442 33444444
No 84
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=89.68 E-value=0.87 Score=40.96 Aligned_cols=71 Identities=14% Similarity=0.051 Sum_probs=52.7
Q ss_pred CCccccccCHHHHHhcccCCCCCcEEEECC------ChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCce
Q 027747 4 PLEIPVMSDLTMVLGSISQSKARAVVIDFT------DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 4 ~~~~~v~~~l~~~l~~~~~~~~~DVvIDFS------~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~ 77 (219)
+.|+|++.|+++++.. .+|++|==+ .|+...+.+..|++.|+.+|.|-=.+-. +.++|.++|++ ++-
T Consensus 57 ~~gipi~~~l~~al~~-----~~d~lvig~a~~gG~l~~~~~~~i~~Al~~G~~Vvsglh~~l~-~~pel~~~A~~-g~~ 129 (349)
T 2obn_A 57 YRYVPIVKSVEAALEY-----KPQVLVIGIAPKGGGIPDDYWIELKTALQAGMSLVNGLHTPLA-NIPDLNALLQP-GQL 129 (349)
T ss_dssp CSCCCEESSHHHHGGG-----CCSEEEECCCCCCC-SCGGGHHHHHHHHHTTCEEEECSSSCCT-TCHHHHHHCCT-TCC
T ss_pred cCCCCccCCHHHHHhC-----CCCEEEEEecCCCCCCCHHHHHHHHHHHHcCCcEEeCccchhh-CCHHHHHHHHc-CCE
Confidence 5689999999999963 799777554 3467789999999999999998654322 23568888876 555
Q ss_pred EEEc
Q 027747 78 CLIA 81 (219)
Q Consensus 78 vv~s 81 (219)
+.=.
T Consensus 130 i~dv 133 (349)
T 2obn_A 130 IWDV 133 (349)
T ss_dssp EEET
T ss_pred EEEe
Confidence 4433
No 85
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1
Probab=89.19 E-value=0.44 Score=42.28 Aligned_cols=86 Identities=9% Similarity=0.020 Sum_probs=54.7
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChh---hH-HHHH--HHhhccCceEE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE---TV-SALS--AFCDKASMGCL 79 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~---~~-~~l~--~~a~~~~~~vv 79 (219)
++++.+++++++. ++|+|+++|-+....++.+.+++.|+++|.=+.-+... .+ ...+ ++ ++-.++
T Consensus 64 ~v~v~~~~e~l~~------~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~sa~~~~~~~~~~v~~vN~~~~---~~~~iI 134 (340)
T 1b7g_O 64 GIPVAGTVEDLIK------TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEKAEVADISFSALCNYNEA---LGKKYI 134 (340)
T ss_dssp TCCCCCCHHHHHH------HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSCGGGSSCEECHHHHHHHH---TTCSEE
T ss_pred ccccccCHhHhhc------CCCEEEECCCCchhHHHHHHHHHcCCeEEEeCCCCCCCCCCEEEcCcchHHH---cCCCCc
Confidence 4556667777664 58999999999999999999999999988854432110 00 1111 22 222333
Q ss_pred EccChhHHHHHHHHHHHHHhhhc
Q 027747 80 IAPTLSIGSILLQQAAISASFHY 102 (219)
Q Consensus 80 ~spNfSlGv~ll~~~~~~aa~~~ 102 (219)
+|-|-..+-+.-+++.+.+.|
T Consensus 135 --snpsCtt~~l~~~lk~L~~~~ 155 (340)
T 1b7g_O 135 --RVVSCNTTALLRTICTVNKVS 155 (340)
T ss_dssp --EECCHHHHHHHHHHHHHHTTS
T ss_pred --ccCCcHHHHHHHHHHHHHHhC
Confidence 455666666666666665543
No 86
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=86.62 E-value=1.5 Score=40.68 Aligned_cols=71 Identities=10% Similarity=-0.018 Sum_probs=58.4
Q ss_pred CCc--EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc
Q 027747 25 ARA--VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY 102 (219)
Q Consensus 25 ~~D--VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~ 102 (219)
..| ++||=.+|+++...++.+. .++|+|-|.| ++.++.+-.++.+++.|++..+| ..+.+.++++.+.+.-
T Consensus 153 ~~dvPL~IDS~dpevleaALea~a-~~~plI~sat---~dn~e~m~~lAa~y~~pVi~~~~---dl~~lkelv~~a~~~G 225 (446)
T 4djd_C 153 ATQLNLVLMADDPDVLKEALAGVA-DRKPLLYAAT---GANYEAMTALAKENNCPLAVYGN---GLEELAELVDKIVALG 225 (446)
T ss_dssp TCCSEEEEECSCHHHHHHHHGGGG-GGCCEEEEEC---TTTHHHHHHHHHHTTCCEEEECS---SHHHHHHHHHHHHHTT
T ss_pred hCCCCEEEecCCHHHHHHHHHhhc-CcCCeeEecc---hhhHHHHHHHHHHcCCcEEEEec---cHHHHHHHHHHHHHCC
Confidence 355 6999999999888887665 4678999987 56677888888999999999999 7788888888887753
No 87
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=84.91 E-value=1.8 Score=38.50 Aligned_cols=75 Identities=9% Similarity=0.110 Sum_probs=50.7
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHH---HcCCcEEEecCCCChhh--H-HHHHHHhhccCceEEE
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQAT---AFGMRSVVYVPHIQLET--V-SALSAFCDKASMGCLI 80 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~---~~g~p~ViGTTG~~~~~--~-~~l~~~a~~~~~~vv~ 80 (219)
+.+++|+++++. .+|+||=..-+..+.+.++... ..+..+|..+.|+..+. + +.+.+......+.++.
T Consensus 87 i~~t~d~~ea~~------~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vls 160 (356)
T 3k96_A 87 LKAYCDLKASLE------GVTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVIS 160 (356)
T ss_dssp EEEESCHHHHHT------TCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEE
T ss_pred eEEECCHHHHHh------cCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEE
Confidence 456788988885 6999997776666666665543 34677899999998753 0 2344433224567888
Q ss_pred ccChhHH
Q 027747 81 APTLSIG 87 (219)
Q Consensus 81 spNfSlG 87 (219)
.|||.--
T Consensus 161 gP~~a~e 167 (356)
T 3k96_A 161 GPSLATE 167 (356)
T ss_dssp SSCCHHH
T ss_pred CccHHHH
Confidence 8998753
No 88
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=84.67 E-value=1.1 Score=39.39 Aligned_cols=47 Identities=15% Similarity=0.183 Sum_probs=37.3
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCC
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ 60 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~ 60 (219)
+.++.+.++++. .+|+|++.|-+....+.++.|++.|++++ ......
T Consensus 67 ~~v~~d~~~l~~------~vDvV~~aTp~~~h~~~a~~~l~aGk~Vi-~sap~~ 113 (334)
T 2czc_A 67 FEVAGTLNDLLE------KVDIIVDATPGGIGAKNKPLYEKAGVKAI-FQGGEK 113 (334)
T ss_dssp CCCSCBHHHHHT------TCSEEEECCSTTHHHHHHHHHHHHTCEEE-ECTTSC
T ss_pred eEEcCcHHHhcc------CCCEEEECCCccccHHHHHHHHHcCCceE-eecccc
Confidence 356778888885 69999999977777899999999999855 554443
No 89
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}
Probab=83.81 E-value=1.5 Score=36.31 Aligned_cols=52 Identities=15% Similarity=0.010 Sum_probs=40.1
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH---cCCcEEEecCCCChhh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLET 63 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~---~g~p~ViGTTG~~~~~ 63 (219)
|+.++.++++++. .+|+||..+.+....+.++...+ .+..+|..|||+..+.
T Consensus 55 g~~~~~~~~~~~~------~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~ 109 (266)
T 3d1l_A 55 EAEYTTDLAEVNP------YAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNV 109 (266)
T ss_dssp TCEEESCGGGSCS------CCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGG
T ss_pred CCceeCCHHHHhc------CCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEECCCCCchHH
Confidence 5566677777764 69999999999888777776654 5777888999998754
No 90
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=82.87 E-value=3.2 Score=38.42 Aligned_cols=67 Identities=4% Similarity=-0.036 Sum_probs=55.2
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhc
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHY 102 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~ 102 (219)
++|| .+|+++...++.+. .+.|+|-..|+-+ ++.+-.++.+++.|++..++ -++.+.++++.+.++-
T Consensus 158 lsID-~dp~vleaale~~~-d~~pLIns~t~en---~~~~~~la~~y~~~vV~~~~---~l~~l~~lv~~a~~~G 224 (445)
T 2h9a_A 158 FILI-GTPEQLAAALETEG-ANNPLLYAATADN---YEQMVELAKKYNVPLTVSAK---GLDALAELVQKITALG 224 (445)
T ss_dssp EEEE-SCHHHHHHHHHHHG-GGCCEEEEECTTT---HHHHHHHHHHHTCCEEEECS---SHHHHHHHHHHHHHTT
T ss_pred EEEE-CCHHHHHHHHHhcC-CCCCEEEECCHHH---HHHHHHHHHHhCCeEEEEcC---CHHHHHHHHHHHHHCC
Confidence 8999 99999998888763 4788999989764 46777778889999999887 6888888888888753
No 91
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=82.86 E-value=3.2 Score=29.14 Aligned_cols=31 Identities=19% Similarity=-0.062 Sum_probs=19.5
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|+||+.+.+......++.|.+.|++.+.-
T Consensus 69 ~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~ 99 (118)
T 3ic5_A 69 GFDAVISAAPFFLTPIIAKAAKAAGAHYFDL 99 (118)
T ss_dssp TCSEEEECSCGGGHHHHHHHHHHTTCEEECC
T ss_pred CCCEEEECCCchhhHHHHHHHHHhCCCEEEe
Confidence 4666666666566666666666666666543
No 92
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=82.66 E-value=4.9 Score=34.57 Aligned_cols=101 Identities=11% Similarity=0.033 Sum_probs=64.0
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh--------hHHHHHHHHHHHHH
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL--------SIGSILLQQAAISA 98 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf--------SlGv~ll~~~~~~a 98 (219)
=+.||=++|+++...++.| .|.++|--.+|.. +.++.+-.++.+++.|+++-++- .-=...+.+.++.+
T Consensus 80 pisIDT~~~~v~~aal~a~--~Ga~iINdvs~~~-d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a 156 (271)
T 2yci_X 80 PCCLDSTNPDAIEAGLKVH--RGHAMINSTSADQ-WKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANA 156 (271)
T ss_dssp CEEEECSCHHHHHHHHHHC--CSCCEEEEECSCH-HHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHH
T ss_pred eEEEeCCCHHHHHHHHHhC--CCCCEEEECCCCc-cccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3899999999888777766 5999999999985 44567777777889999998761 11144555555555
Q ss_pred hhhc-C-CeEEEecCC-C-CCCCCcHHHHHHHHHHHhc
Q 027747 99 SFHY-K-NVEIVESRP-N-ARDFPSPDATQIANNLSNL 132 (219)
Q Consensus 99 a~~~-~-dieIiE~Hh-~-K~DaPSGTA~~la~~i~~~ 132 (219)
.+.- + +==|++--- - .+.. .-++.+.+.+...
T Consensus 157 ~~~Gi~~~~IilDPg~gfigk~~--~~~~~~l~~l~~~ 192 (271)
T 2yci_X 157 DAHGIPMTELYIDPLILPVNVAQ--EHAVEVLETIRQI 192 (271)
T ss_dssp HHTTCCGGGEEEECCCCCTTTST--HHHHHHHHHHHHH
T ss_pred HHCCCCcccEEEecCCCccccCH--HHHHHHHHHHHHH
Confidence 5432 1 112455422 1 2221 3456666666554
No 93
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=82.66 E-value=1.4 Score=39.01 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=36.7
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCC
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ 60 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~ 60 (219)
+++..+.++++. .+|+|+++|-+....+.++.+++.|+++| -.++-.
T Consensus 66 l~v~~~~~~~~~------~vDvV~~atp~~~~~~~a~~~l~aG~~VI-d~sp~~ 112 (337)
T 1cf2_P 66 IEVAGTVDDMLD------EADIVIDCTPEGIGAKNLKMYKEKGIKAI-FQGGEK 112 (337)
T ss_dssp CCCCEEHHHHHH------TCSEEEECCSTTHHHHHHHHHHHHTCCEE-ECTTSC
T ss_pred eEEcCCHHHHhc------CCCEEEECCCchhhHHHHHHHHHcCCEEE-EecCCC
Confidence 444456777765 69999999999999999999999999854 455443
No 94
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=81.09 E-value=4.6 Score=34.01 Aligned_cols=73 Identities=16% Similarity=0.098 Sum_probs=48.1
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECC-ChhhHHHHHH---HH---HHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVK---QA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS-~p~~~~~~~~---~~---~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+...+++++++. .+|+||-.. .|..+.+.+. .. +..+. +|+-++.......+.+.+...+.++.+
T Consensus 46 g~~~~~~~~~~~~------~aDvvi~~vp~~~~~~~v~~~~~~~~~~l~~~~-~vi~~st~~~~~~~~l~~~~~~~g~~~ 118 (302)
T 2h78_A 46 GASAARSARDAVQ------GADVVISMLPASQHVEGLYLDDDGLLAHIAPGT-LVLECSTIAPTSARKIHAAARERGLAM 118 (302)
T ss_dssp TCEECSSHHHHHT------TCSEEEECCSCHHHHHHHHHSSSCGGGSSCSSC-EEEECSCCCHHHHHHHHHHHHHTTCCE
T ss_pred CCeEcCCHHHHHh------CCCeEEEECCCHHHHHHHHcCchhHHhcCCCCc-EEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 5667788888885 689888776 4666666654 22 22344 555555555666567777666667888
Q ss_pred EEccChh
Q 027747 79 LIAPTLS 85 (219)
Q Consensus 79 v~spNfS 85 (219)
+-+|++.
T Consensus 119 ~~~pv~~ 125 (302)
T 2h78_A 119 LDAPVSG 125 (302)
T ss_dssp EECCEES
T ss_pred EEEEccC
Confidence 8888776
No 95
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=80.36 E-value=3.6 Score=35.16 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=44.0
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+.||=++|+++...++.| .|.++|=-.+|+ ++.++.+-.++.+++.|+++-++
T Consensus 72 isIDT~~~~v~~aAl~a~--~Ga~iINdvs~~-~d~~~~~~~~~a~~~~~vvlmh~ 124 (262)
T 1f6y_A 72 LCLDSTNIKAIEAGLKKC--KNRAMINSTNAE-REKVEKLFPLAVEHGAALIGLTM 124 (262)
T ss_dssp EEEECSCHHHHHHHHHHC--SSCEEEEEECSC-HHHHHHHHHHHHHTTCEEEEESC
T ss_pred EEEeCCCHHHHHHHHhhC--CCCCEEEECCCC-cccHHHHHHHHHHhCCcEEEEcC
Confidence 799999999988877766 599999999998 45555777777889999999776
No 96
>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*
Probab=80.06 E-value=3.3 Score=34.64 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=47.0
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECC-ChhhHHHHHHH------HHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS-~p~~~~~~~~~------~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+.+++++++++. .+|+||-.+ .|..+.+.+.. +++.+..+|. ++|.+.+....+.+...+.++..
T Consensus 43 g~~~~~~~~~~~~------~~Dvvi~~vp~~~~~~~v~~~~~~~~~~l~~~~~vv~-~s~~~~~~~~~~~~~~~~~g~~~ 115 (296)
T 2gf2_A 43 GEQVVSSPADVAE------KADRIITMLPTSINAIEAYSGANGILKKVKKGSLLID-SSTIDPAVSKELAKEVEKMGAVF 115 (296)
T ss_dssp TCEECSSHHHHHH------HCSEEEECCSSHHHHHHHHHSTTSGGGTCCTTCEEEE-CSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CCeecCCHHHHHh------cCCEEEEeCCCHHHHHHHHhCchhHHhcCCCCCEEEE-CCCCCHHHHHHHHHHHHHcCCEE
Confidence 5667778888876 589998776 66666666653 2234555555 89999877777765554344433
Q ss_pred EEccChhHH
Q 027747 79 LIAPTLSIG 87 (219)
Q Consensus 79 v~spNfSlG 87 (219)
+-+| ++.|
T Consensus 116 ~~~p-~~~g 123 (296)
T 2gf2_A 116 MDAP-VSGG 123 (296)
T ss_dssp EECC-EESH
T ss_pred EEcC-CCCC
Confidence 3333 4444
No 97
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Probab=79.45 E-value=3.4 Score=32.77 Aligned_cols=69 Identities=9% Similarity=-0.045 Sum_probs=45.1
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH--cCCcEEEecCCCChh-----------hHHHHHHHhhccCce
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA--FGMRSVVYVPHIQLE-----------TVSALSAFCDKASMG 77 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~--~g~p~ViGTTG~~~~-----------~~~~l~~~a~~~~~~ 77 (219)
.++++++. .+|+||..+.|..+.+.++...+ .+..+|..++|++.+ ..+.|.+.. .+..
T Consensus 56 ~~~~~~~~------~~D~Vi~~~~~~~~~~~~~~l~~~~~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~--~~~~ 127 (212)
T 1jay_A 56 MKNEDAAE------ACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVL--ESEK 127 (212)
T ss_dssp EEHHHHHH------HCSEEEECSCHHHHHHHHHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHH--TCSC
T ss_pred hhHHHHHh------cCCEEEEeCChhhHHHHHHHHHHHcCCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhC--CCCe
Confidence 46777765 58999999998887776653322 378889999998732 135566554 2356
Q ss_pred EEEc-cChhHH
Q 027747 78 CLIA-PTLSIG 87 (219)
Q Consensus 78 vv~s-pNfSlG 87 (219)
++-+ +|.+..
T Consensus 128 ~v~~~~~~~~~ 138 (212)
T 1jay_A 128 VVSALHTIPAA 138 (212)
T ss_dssp EEECCTTCCHH
T ss_pred EEEEccchHHH
Confidence 6666 344433
No 98
>1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3
Probab=78.95 E-value=5.1 Score=36.30 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=59.5
Q ss_pred ccCHHHHHhcccCCCCCcEEEECC---ChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh-
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFT---DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS- 85 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS---~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS- 85 (219)
..|+.+.+++ .++||+|.+- +-+++.-.+..|++.|+|+|=||.=+... ...+.++++++++|+ .---|=
T Consensus 127 ~~Di~~~~~~----~~~dVvV~~lp~gs~~aS~~YA~Aal~ag~~fvN~~P~~~~~-~P~~~el~~~~g~pi-~GdD~Ks 200 (367)
T 1gr0_A 127 PVDVVQALKE----AKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVFIAS-DPVWAKKFTDARVPI-VGDDIKS 200 (367)
T ss_dssp CCCHHHHHHH----TTCSEEEECCCTTCHHHHHHHHHHHHHHTCEEEECSSCCSTT-SHHHHHHHHHHTCEE-EESSBCC
T ss_pred hhHHHHHHHH----hCCcEEEEeeeCCCcCHHHHHHHHHHHcCCceEecCCccccC-CHHHHHHHHHcCCCE-ecccccc
Confidence 4477788875 4799999984 33555667788899999999999866542 256788888888884 456666
Q ss_pred -HHHHHHHHHHH
Q 027747 86 -IGSILLQQAAI 96 (219)
Q Consensus 86 -lGv~ll~~~~~ 96 (219)
.|..+|...+.
T Consensus 201 q~G~T~~k~~La 212 (367)
T 1gr0_A 201 QVGATITHRVLA 212 (367)
T ss_dssp SSCHHHHHHHHH
T ss_pred ccCCChHHHHHH
Confidence 88888866443
No 99
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=78.46 E-value=5.9 Score=33.12 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=45.7
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECC-ChhhHHHHHH------HHHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVK------QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS-~p~~~~~~~~------~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+.+++++++++. .+|+||-.+ .|..+...+. .++..+..+|..+||. +...+.|.+...+.++.+
T Consensus 47 g~~~~~~~~~~~~------~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~-~~~~~~l~~~~~~~g~~~ 119 (301)
T 3cky_A 47 GAQACENNQKVAA------ASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVS-PSSTLKMAKVAAEKGIDY 119 (301)
T ss_dssp TCEECSSHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCC-HHHHHHHHHHHHHTTCEE
T ss_pred CCeecCCHHHHHh------CCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeE
Confidence 5566778888876 589988777 5665666553 2345577777777777 334456666654455665
Q ss_pred EEccC
Q 027747 79 LIAPT 83 (219)
Q Consensus 79 v~spN 83 (219)
+-+|.
T Consensus 120 ~~~p~ 124 (301)
T 3cky_A 120 VDAPV 124 (301)
T ss_dssp EECCE
T ss_pred EEccC
Confidence 55554
No 100
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=76.07 E-value=15 Score=30.60 Aligned_cols=81 Identities=6% Similarity=0.040 Sum_probs=48.1
Q ss_pred cCHHHHHhcccCCCCCcEE---EECCCh------hhHHHHHHHHHHcCCcEEEec--------CCCChhhHHHHHHHhhc
Q 027747 11 SDLTMVLGSISQSKARAVV---IDFTDA------STVYDNVKQATAFGMRSVVYV--------PHIQLETVSALSAFCDK 73 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVv---IDFS~p------~~~~~~~~~~~~~g~p~ViGT--------TG~~~~~~~~l~~~a~~ 73 (219)
...++++.. .+|.| +-...+ +.+.+..+.|.+.|+|+++.+ .|++.+....+...+.+
T Consensus 103 ~~v~~a~~~-----Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~ 177 (273)
T 2qjg_A 103 TTVEEAIRM-----GADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAE 177 (273)
T ss_dssp SCHHHHHHT-----TCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHH
Confidence 456666663 57754 433333 135566777888899998876 45776655555344555
Q ss_pred cCceEEEccChhHHHHHHHHHHHH
Q 027747 74 ASMGCLIAPTLSIGSILLQQAAIS 97 (219)
Q Consensus 74 ~~~~vv~spNfSlGv~ll~~~~~~ 97 (219)
.+.-+|... ++.|..++.++.+.
T Consensus 178 ~Gad~i~~~-~~~~~~~l~~i~~~ 200 (273)
T 2qjg_A 178 LGADIVKTS-YTGDIDSFRDVVKG 200 (273)
T ss_dssp TTCSEEEEC-CCSSHHHHHHHHHH
T ss_pred cCCCEEEEC-CCCCHHHHHHHHHh
Confidence 666655544 35666666555443
No 101
>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6
Probab=76.05 E-value=7.7 Score=32.35 Aligned_cols=71 Identities=13% Similarity=0.056 Sum_probs=45.1
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCC-hhhHHHHH------HHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNV------KQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~-p~~~~~~~------~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+.++.++++++. .+|+||-.+. |..+...+ ..++..+..+|..+||.. ...+.|.+...+.++.+
T Consensus 48 g~~~~~~~~~~~~------~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~-~~~~~l~~~~~~~g~~~ 120 (299)
T 1vpd_A 48 GAETASTAKAIAE------QCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAP-LASREISDALKAKGVEM 120 (299)
T ss_dssp TCEECSSHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCH-HHHHHHHHHHHTTTCEE
T ss_pred CCeecCCHHHHHh------CCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCH-HHHHHHHHHHHHcCCeE
Confidence 5566778888876 5899998886 55556555 233456777777777763 34456766655555655
Q ss_pred EEccC
Q 027747 79 LIAPT 83 (219)
Q Consensus 79 v~spN 83 (219)
+-+|-
T Consensus 121 ~~~pv 125 (299)
T 1vpd_A 121 LDAPV 125 (299)
T ss_dssp EECCE
T ss_pred EEecC
Confidence 54443
No 102
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=75.42 E-value=3.9 Score=35.30 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHHH-hh--ccCceEEE
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSAF-CD--KASMGCLI 80 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~~-a~--~~~~~vv~ 80 (219)
.+++..++++.++.|+. +|.|||| ++.++..++-+. ++ ..++|++.
T Consensus 27 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 81 (297)
T 3flu_A 27 YEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIA 81 (297)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 35566666777777765 4447776 355554443322 21 13456654
No 103
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=75.38 E-value=3.3 Score=36.20 Aligned_cols=45 Identities=7% Similarity=-0.024 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHHH-hh--ccCceEEE
Q 027747 36 STVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSAF-CD--KASMGCLI 80 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~~-a~--~~~~~vv~ 80 (219)
+++..++++.++.|+. +|.|||| ++.++..++-+. ++ ..++|++.
T Consensus 28 ~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpVia 81 (311)
T 3h5d_A 28 DAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIA 81 (311)
T ss_dssp THHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 4566677777777764 5567777 566554444333 22 13456665
No 104
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=75.32 E-value=3.7 Score=35.65 Aligned_cols=47 Identities=9% Similarity=-0.077 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHHH-hh--ccCceEEEc
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSAF-CD--KASMGCLIA 81 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~~-a~--~~~~~vv~s 81 (219)
.+++.+++++.++.|+. +|.|||| ++.++..++-+. ++ ..++||+..
T Consensus 35 ~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaG 90 (304)
T 3l21_A 35 TATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAG 90 (304)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEe
Confidence 46778888888888886 5568888 466665444333 22 135777764
No 105
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=74.72 E-value=3 Score=36.39 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=12.9
Q ss_pred eEEEecCC--C-CCCCCcHHHHHHHHH
Q 027747 105 VEIVESRP--N-ARDFPSPDATQIANN 128 (219)
Q Consensus 105 ieIiE~Hh--~-K~DaPSGTA~~la~~ 128 (219)
+-|+=.|- + +.|.+.-|-.+|++.
T Consensus 135 lPiilYn~P~~tg~~l~~~~~~~La~~ 161 (313)
T 3dz1_A 135 VPWVLQDYPLTLSVVMTPKVIRQIVMD 161 (313)
T ss_dssp SCEEEEECHHHHCCCCCHHHHHHHHHH
T ss_pred CcEEEEeCccccCcCCCHHHHHHHHHh
Confidence 44444432 3 666666666666643
No 106
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=74.39 E-value=5.5 Score=33.15 Aligned_cols=71 Identities=13% Similarity=0.034 Sum_probs=43.4
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECC-ChhhHHHHHH---H---HHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYDNVK---Q---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS-~p~~~~~~~~---~---~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+.++.++++++. .+|+||-.+ .+..+...+. . ++..+..+|.-+||. +...+.|.+...+.++.+
T Consensus 45 g~~~~~~~~~~~~------~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~-~~~~~~l~~~~~~~g~~~ 117 (295)
T 1yb4_A 45 GAVNVETARQVTE------FADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSIS-PIETKRFAQRVNEMGADY 117 (295)
T ss_dssp TCBCCSSHHHHHH------TCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCC-HHHHHHHHHHHHTTTEEE
T ss_pred CCcccCCHHHHHh------cCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCC-HHHHHHHHHHHHHcCCeE
Confidence 5566778888876 699988777 4444555554 1 234466666666664 444566766665555555
Q ss_pred EEccC
Q 027747 79 LIAPT 83 (219)
Q Consensus 79 v~spN 83 (219)
+-+|-
T Consensus 118 ~~~p~ 122 (295)
T 1yb4_A 118 LDAPV 122 (295)
T ss_dssp EECCE
T ss_pred EEccC
Confidence 54443
No 107
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=74.08 E-value=5.3 Score=34.71 Aligned_cols=75 Identities=12% Similarity=0.152 Sum_probs=48.8
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHH-------HHHc-CCcEEEecCCCChhhHHHHHHHhhcc---
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQ-------ATAF-GMRSVVYVPHIQLETVSALSAFCDKA--- 74 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~-------~~~~-g~p~ViGTTG~~~~~~~~l~~~a~~~--- 74 (219)
++.+.+++++++. .+|+||=...+..+.+.++. ++.. +..+|.-+.|++.+..+.+.+...+.
T Consensus 72 ~~~~~~~~~~~~~------~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~ 145 (366)
T 1evy_A 72 NITFTSDVEKAYN------GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPS 145 (366)
T ss_dssp TEEEESCHHHHHT------TCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCG
T ss_pred ceeeeCCHHHHHc------CCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCC
Confidence 3556678888775 69999888877666666554 3444 77788877798875433333332221
Q ss_pred -CceEEEccChhH
Q 027747 75 -SMGCLIAPTLSI 86 (219)
Q Consensus 75 -~~~vv~spNfSl 86 (219)
..+++..||++-
T Consensus 146 ~~~~v~~gp~~~~ 158 (366)
T 1evy_A 146 PLLSVLAGPSFAI 158 (366)
T ss_dssp GGEEEEESSCCHH
T ss_pred CcEEEEeCCChHH
Confidence 257888899875
No 108
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Probab=73.92 E-value=4.3 Score=33.33 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=39.9
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHH
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSA 66 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~ 66 (219)
|+.++.++++++. .+|+||-.+.|....+.++.. +.|..+|.-++|.+.+++++
T Consensus 47 g~~~~~~~~~~~~------~~D~Vi~~v~~~~~~~v~~~l-~~~~~vv~~~~~~~~~~l~~ 100 (259)
T 2ahr_A 47 ALPYAMSHQDLID------QVDLVILGIKPQLFETVLKPL-HFKQPIISMAAGISLQRLAT 100 (259)
T ss_dssp TCCBCSSHHHHHH------TCSEEEECSCGGGHHHHHTTS-CCCSCEEECCTTCCHHHHHH
T ss_pred CCEeeCCHHHHHh------cCCEEEEEeCcHhHHHHHHHh-ccCCEEEEeCCCCCHHHHHH
Confidence 5667788888886 699999999888877777643 36776666777898765433
No 109
>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*
Probab=73.17 E-value=2.4 Score=37.85 Aligned_cols=42 Identities=5% Similarity=0.033 Sum_probs=32.4
Q ss_pred HHHHHhcccCCCCCcEEEECCCh-hhHHHHHHHHHHcCCcEEEecCCCC
Q 027747 13 LTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQ 60 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~p-~~~~~~~~~~~~~g~p~ViGTTG~~ 60 (219)
+++.+. .+|+|||-|.- ++-...-+.|.++++|+|.+..||+
T Consensus 133 l~~~l~------~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa~G~~ 175 (340)
T 3rui_A 133 LRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGFD 175 (340)
T ss_dssp HHHHHH------HCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEEECSS
T ss_pred HHhhhc------cCCEEEecCCCHHHHHHHHHHHHHcCCcEEEeeecce
Confidence 456665 69999998864 4444555899999999999988885
No 110
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=73.00 E-value=4.3 Score=34.89 Aligned_cols=46 Identities=9% Similarity=0.009 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHHH-hh--ccCceEEE
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSAF-CD--KASMGCLI 80 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~~-a~--~~~~~vv~ 80 (219)
.+++..++++.++.|+. +|.|||| ++.++..++-+. ++ ..++|++.
T Consensus 21 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 75 (291)
T 3tak_A 21 WKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIA 75 (291)
T ss_dssp HHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 35667777777777775 4457777 355554443332 21 13466665
No 111
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=72.28 E-value=3.7 Score=35.79 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=9.6
Q ss_pred cCCcEEEecCCCChhh
Q 027747 48 FGMRSVVYVPHIQLET 63 (219)
Q Consensus 48 ~g~p~ViGTTG~~~~~ 63 (219)
.++|++.||.+.+-++
T Consensus 76 grvpviaGvg~~~t~~ 91 (309)
T 3fkr_A 76 GRVPVIVTTSHYSTQV 91 (309)
T ss_dssp TSSCEEEECCCSSHHH
T ss_pred CCCcEEEecCCchHHH
Confidence 3566777766655544
No 112
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}
Probab=71.34 E-value=15 Score=33.71 Aligned_cols=72 Identities=18% Similarity=0.074 Sum_probs=49.8
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHH--HHHHHHHHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS--ILLQQAAISA 98 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv--~ll~~~~~~a 98 (219)
.+|+||.-+.+..-....+.|++.|+.++. ++-+++. ...+.+.++++++.++-...|.-|+ .+..+++.++
T Consensus 88 ~~DvVIn~tp~~~~~~v~~a~l~~g~~vvd-~~~~~p~-~~~Ll~~Ak~aGv~~i~g~G~~PG~~~~~a~~li~q~ 161 (467)
T 2axq_A 88 DNDVVISLIPYTFHPNVVKSAIRTKTDVVT-SSYISPA-LRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTIDEV 161 (467)
T ss_dssp TSSEEEECSCGGGHHHHHHHHHHHTCEEEE-CSCCCHH-HHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHHHHHH
T ss_pred CCCEEEECCchhhhHHHHHHHHhcCCEEEE-eecCCHH-HHHHHHHHHHcCCEEEecCCcCccchHHHHHHHHHHH
Confidence 699999998776556677889999988774 4444554 4566677777888888777774443 3334455555
No 113
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=71.25 E-value=6.9 Score=33.64 Aligned_cols=73 Identities=7% Similarity=-0.205 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhcCCeEEE
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV 108 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~~dieIi 108 (219)
.+.+..++++.++.|+. +|.|||| ++.++..++-+.+.+.--+ |++.=-+....-..++++.+.+.-.|.=.+
T Consensus 19 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg~~~t~~ai~la~~A~~~Gadavlv 97 (293)
T 1w3i_A 19 KEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVGGLNLDDAIRLAKLSKDFDIVGIAS 97 (293)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECCCSCHHHHHHHHHHGGGSCCSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC-EEEecCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 46677888888888875 3458888 5666655544443322222 333222222222234455555443444333
No 114
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=70.77 E-value=3.9 Score=35.57 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=6.5
Q ss_pred CCCCCcHHHHHHH
Q 027747 114 ARDFPSPDATQIA 126 (219)
Q Consensus 114 K~DaPSGTA~~la 126 (219)
+.|.+.-|-.+|+
T Consensus 155 g~~l~~~~~~~La 167 (307)
T 3s5o_A 155 GLDLPVDAVVTLS 167 (307)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHh
Confidence 4555545544444
No 115
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=70.75 E-value=13 Score=33.25 Aligned_cols=46 Identities=13% Similarity=0.002 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHH-HHHhh--ccCceEEE
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSAL-SAFCD--KASMGCLI 80 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l-~~~a~--~~~~~vv~ 80 (219)
.+++..++++.++.|+. +|.|||| ++.++..++ +.+++ ..++||+.
T Consensus 79 ~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia 133 (360)
T 4dpp_A 79 LEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIG 133 (360)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 36788888899999986 4558998 466665444 33322 24578876
No 116
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=70.70 E-value=3.8 Score=35.86 Aligned_cols=16 Identities=6% Similarity=-0.184 Sum_probs=9.2
Q ss_pred cCCcEEEecCCCChhh
Q 027747 48 FGMRSVVYVPHIQLET 63 (219)
Q Consensus 48 ~g~p~ViGTTG~~~~~ 63 (219)
..+|+|.||.+.+-.+
T Consensus 79 grvpviaGvg~~~t~~ 94 (318)
T 3qfe_A 79 PDFPIMAGVGAHSTRQ 94 (318)
T ss_dssp TTSCEEEECCCSSHHH
T ss_pred CCCcEEEeCCCCCHHH
Confidence 3466666666655544
No 117
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=70.51 E-value=13 Score=31.13 Aligned_cols=70 Identities=11% Similarity=0.054 Sum_probs=44.5
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCC-hhhHHHHH---H---HHHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~-p~~~~~~~---~---~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+...+++++++. .+|+||-... |..+.+.+ + .+++.+. +|+-+++.+++...++.+..++.++..
T Consensus 44 g~~~~~~~~~~~~------~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~-~vi~~st~~~~~~~~~~~~~~~~g~~~ 116 (287)
T 3pef_A 44 GAERAATPCEVVE------SCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGR-GYVDMSTVDPATSQRIGVAVVAKGGRF 116 (287)
T ss_dssp TCEECSSHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CCeecCCHHHHHh------cCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCC-EEEeCCCCCHHHHHHHHHHHHHhCCEE
Confidence 5667788899886 5898886665 55666665 2 2334454 455556666766667776665566655
Q ss_pred EEcc
Q 027747 79 LIAP 82 (219)
Q Consensus 79 v~sp 82 (219)
+-+|
T Consensus 117 ~~~p 120 (287)
T 3pef_A 117 LEAP 120 (287)
T ss_dssp EECC
T ss_pred EECC
Confidence 5554
No 118
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=70.49 E-value=19 Score=31.44 Aligned_cols=69 Identities=12% Similarity=0.010 Sum_probs=49.1
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCC-hhhHHHHHHHhhccCceEEEccC--------hhHHHHHHHHHHHHH
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAPT--------LSIGSILLQQAAISA 98 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~-~~~~~~l~~~a~~~~~~vv~spN--------fSlGv~ll~~~~~~a 98 (219)
+.||=+.|+++...++.| .|.++|=-.+|.. ++.++.+-.++++++.|+|+-++ +---+.+..++.+.+
T Consensus 87 isIDT~~~~V~eaaL~~~--~Ga~iINdIs~~~~d~~~~~~~~l~a~~ga~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~ 164 (300)
T 3k13_A 87 VMIDSSKWEVIEAGLKCL--QGKSIVNSISLKEGEEVFLEHARIIKQYGAATVVMAFDEKGQADTAARKIEVCERAYRLL 164 (300)
T ss_dssp EEEECSCHHHHHHHHHHC--SSCCEEEEECSTTCHHHHHHHHHHHHHHTCEEEEESEETTEECCSHHHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhc--CCCCEEEeCCcccCChhHHHHHHHHHHhCCeEEEEeeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 789999998876666654 6889988888886 44556677777788888888775 333445555555554
No 119
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=70.19 E-value=8.3 Score=32.64 Aligned_cols=72 Identities=15% Similarity=0.043 Sum_probs=45.3
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCC-hhhHHHHHHH------HHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~-p~~~~~~~~~------~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+.++.++++++. .+|+||-.+. |..+.+.+.. .+..+..+|..+|+ +....+.|.+...+.++.+
T Consensus 73 g~~~~~~~~~~~~------~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~-~~~~~~~l~~~~~~~~~~~ 145 (316)
T 2uyy_A 73 GARLGRTPAEVVS------TCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTV-DADTVTELAQVIVSRGGRF 145 (316)
T ss_dssp TCEECSCHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCC-CHHHHHHHHHHHHHTTCEE
T ss_pred CCEEcCCHHHHHh------cCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCC-CHHHHHHHHHHHHHcCCEE
Confidence 4556678888775 5899998877 7777766653 23345556656554 4555566666654456666
Q ss_pred EEccCh
Q 027747 79 LIAPTL 84 (219)
Q Consensus 79 v~spNf 84 (219)
+-+|.+
T Consensus 146 v~~p~~ 151 (316)
T 2uyy_A 146 LEAPVS 151 (316)
T ss_dssp EECCEE
T ss_pred EEcCcc
Confidence 656644
No 120
>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}
Probab=69.37 E-value=23 Score=29.76 Aligned_cols=71 Identities=6% Similarity=-0.025 Sum_probs=46.7
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH----cCCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA----FGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~----~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
+|+.++.+..+++. .+|+||--..|..+.+.++.... .+..+|.-+.|++.+ .|.++.. .+.+++-
T Consensus 49 ~gi~~~~~~~~~~~------~aDvVilav~p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~---~l~~~l~-~~~~vvr 118 (280)
T 3tri_A 49 CGVHTTQDNRQGAL------NADVVVLAVKPHQIKMVCEELKDILSETKILVISLAVGVTTP---LIEKWLG-KASRIVR 118 (280)
T ss_dssp TCCEEESCHHHHHS------SCSEEEECSCGGGHHHHHHHHHHHHHTTTCEEEECCTTCCHH---HHHHHHT-CCSSEEE
T ss_pred cCCEEeCChHHHHh------cCCeEEEEeCHHHHHHHHHHHHhhccCCCeEEEEecCCCCHH---HHHHHcC-CCCeEEE
Confidence 46777788888875 69999999989888877765543 344566667788865 4555442 2234443
Q ss_pred -ccChh
Q 027747 81 -APTLS 85 (219)
Q Consensus 81 -spNfS 85 (219)
-||..
T Consensus 119 ~mPn~p 124 (280)
T 3tri_A 119 AMPNTP 124 (280)
T ss_dssp EECCGG
T ss_pred EecCCh
Confidence 36653
No 121
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=69.06 E-value=7.6 Score=33.30 Aligned_cols=75 Identities=9% Similarity=-0.118 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHHcCCcE--EEecCC----CChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhcCCeEEE
Q 027747 35 ASTVYDNVKQATAFGMRS--VVYVPH----IQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIV 108 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~--ViGTTG----~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~~dieIi 108 (219)
.+++..++++.++.|+.- |.|||| ++.++..++-+.+.+.--+ |++.=-+....-..++++.+.+.-.|.=.+
T Consensus 19 ~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-ViaGvg~~~t~~ai~la~~A~~~Gadavlv 97 (288)
T 2nuw_A 19 VDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK-LIFQVGSLNLNDVMELVKFSNEMDILGVSS 97 (288)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC-EEEECCCSCHHHHHHHHHHHHTSCCSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-eEEeeCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 567889999999999863 569999 6666665555544332223 443322222223344555555543454433
Q ss_pred ec
Q 027747 109 ES 110 (219)
Q Consensus 109 E~ 110 (219)
=.
T Consensus 98 ~~ 99 (288)
T 2nuw_A 98 HS 99 (288)
T ss_dssp CC
T ss_pred cC
Confidence 33
No 122
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=68.88 E-value=5.4 Score=34.12 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=36.3
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHh
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a 71 (219)
+|||+.++...+..+.|.+.|-=.|++- |.+++.++++.+.+
T Consensus 6 vIDls~~~~~~~l~~A~~~~GFF~v~nH-Gi~~~li~~~~~~~ 47 (280)
T 3on7_A 6 TIDYRAADSAKRFVESLRETGFGVLSNH-PIDKELVERIYTEW 47 (280)
T ss_dssp EEETTSTTHHHHHHHHHHHHSEEEEESC-SSCHHHHHHHHHHH
T ss_pred EEECCChhHHHHHHHHHHhCCEEEEECC-CCCHHHHHHHHHHH
Confidence 8999999999999999999999999984 89887777776655
No 123
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A
Probab=68.84 E-value=16 Score=33.19 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=48.0
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHH--HHHHHHHHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS--ILLQQAAISA 98 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv--~ll~~~~~~a 98 (219)
.+|+||..+.+.........|++.|++++ .++-+.+. ...+.++++++++.++...+|.-|. .+..+++..+
T Consensus 68 ~~DvVIn~a~~~~~~~i~~a~l~~g~~vv-d~~~~~~~-~~~l~~aA~~aGv~~i~g~g~~pg~~~~~a~~li~q~ 141 (450)
T 1ff9_A 68 KHDLVISLIPYTFHATVIKSAIRQKKHVV-TTSYVSPA-MMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEV 141 (450)
T ss_dssp TSSEEEECCC--CHHHHHHHHHHHTCEEE-ESSCCCHH-HHHTHHHHHHTTCEEECSCBBTTBHHHHHHHHHHHHH
T ss_pred CCcEEEECCccccchHHHHHHHhCCCeEE-EeecccHH-HHHHHHHHHHCCCeEEeCCCCcCchHHHHHHHHHHHh
Confidence 68999998866544456677888888765 45444543 4566777778899988888884444 4445555555
No 124
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=68.62 E-value=5.4 Score=34.48 Aligned_cols=14 Identities=0% Similarity=0.100 Sum_probs=8.9
Q ss_pred CCCCCcHHHHHHHH
Q 027747 114 ARDFPSPDATQIAN 127 (219)
Q Consensus 114 K~DaPSGTA~~la~ 127 (219)
+.|.+.-|-.+|++
T Consensus 147 g~~l~~~~~~~La~ 160 (301)
T 3m5v_A 147 GCEISTDTIIKLFR 160 (301)
T ss_dssp SCCCCHHHHHHHHH
T ss_pred CcCCCHHHHHHHHh
Confidence 66666666666664
No 125
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=68.25 E-value=13 Score=32.43 Aligned_cols=55 Identities=9% Similarity=0.161 Sum_probs=41.5
Q ss_pred CcEEEEC--CChhhHHHHHHHHHHcCCc-EEEecCCCC--hhhHHHHHHHhhc-cCceEEE
Q 027747 26 RAVVIDF--TDASTVYDNVKQATAFGMR-SVVYVPHIQ--LETVSALSAFCDK-ASMGCLI 80 (219)
Q Consensus 26 ~DVvIDF--S~p~~~~~~~~~~~~~g~p-~ViGTTG~~--~~~~~~l~~~a~~-~~~~vv~ 80 (219)
+=++||= ..++...+.++.+++.|.. +.|||||.+ ++....+-+.+++ ..+|+++
T Consensus 41 ~~~liDPdK~~~~~~~~~~~~~~~sGtDai~VGS~~vt~~~~~~~~~v~~ik~~~~lPvil 101 (286)
T 3vk5_A 41 PVHIIDPFKVPVTEAVEKAAELTRLGFAAVLLASTDYESFESHMEPYVAAVKAATPLPVVL 101 (286)
T ss_dssp EEEEECTTTSCHHHHHHHHHHHHHTTCSCEEEECSCCSSHHHHHHHHHHHHHHHCSSCEEE
T ss_pred ceEEECCCCCCcHHHHHHHHHHHhcCCCEEEEccCCCCcchHHHHHHHHHHHHhCCCCEEE
Confidence 4467775 3456666678888888774 667999999 8887777666666 7999999
No 126
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=68.17 E-value=31 Score=28.04 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=24.7
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|. ++.-..++.....++.+.+.|+|+|.--+
T Consensus 57 ~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (306)
T 8abp_A 57 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 90 (306)
T ss_dssp TCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred CCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCC
Confidence 6884 55555566777788999999999997543
No 127
>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}
Probab=68.11 E-value=5 Score=35.19 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=47.9
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH-------cCCcEEEecCCCChh-----hH-HHHHHHhh
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA-------FGMRSVVYVPHIQLE-----TV-SALSAFCD 72 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~-------~g~p~ViGTTG~~~~-----~~-~~l~~~a~ 72 (219)
++.+++++++++. .+|+||=...+..+.+.++.... .+..+|.-++|++.+ .+ +.+.+...
T Consensus 90 ~i~~~~~~~ea~~------~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~ 163 (375)
T 1yj8_A 90 NIVAHSDLASVIN------DADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLN 163 (375)
T ss_dssp TEEEESSTHHHHT------TCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSS
T ss_pred CeEEECCHHHHHc------CCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcC
Confidence 3556677877765 69999988888777777765443 255677777798762 22 22333221
Q ss_pred ccCceEEEccChhH
Q 027747 73 KASMGCLIAPTLSI 86 (219)
Q Consensus 73 ~~~~~vv~spNfSl 86 (219)
...+++..||++.
T Consensus 164 -~~~~v~~gp~~a~ 176 (375)
T 1yj8_A 164 -IPCSALSGANIAM 176 (375)
T ss_dssp -SCEEEEECSCCHH
T ss_pred -CCEEEEeCCchHH
Confidence 3467888899875
No 128
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=68.08 E-value=5.9 Score=36.58 Aligned_cols=62 Identities=8% Similarity=0.105 Sum_probs=43.5
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecCCCCh----hhHHHHHHHhhccCceEEEccChhHHHHHHHHHH
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVPHIQL----ETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 95 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTTG~~~----~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~ 95 (219)
.|+.+.+.++..-..++++|++|++... ++++.|.++|.++++|+++=.-+..-......+.
T Consensus 183 d~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~ 248 (450)
T 3bc8_A 183 DLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLI 248 (450)
T ss_dssp CHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHH
Confidence 4666676666543236789999988764 7899999999999999998755543333333343
No 129
>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*
Probab=67.97 E-value=6.7 Score=33.66 Aligned_cols=73 Identities=7% Similarity=0.113 Sum_probs=48.0
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH---cCCcEEEecCCCCh-----hhH-HHHHHHhhccCce
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQL-----ETV-SALSAFCDKASMG 77 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~---~g~p~ViGTTG~~~-----~~~-~~l~~~a~~~~~~ 77 (219)
+.+++++++++. .+|+||=...+..+.+.++.... .+..+|.-++|++. +.+ +.+.+... ...+
T Consensus 78 ~~~~~~~~~~~~------~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~-~~~~ 150 (354)
T 1x0v_A 78 VVAVPDVVQAAE------DADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLG-IPMS 150 (354)
T ss_dssp EEEESSHHHHHT------TCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHT-CCEE
T ss_pred eEEEcCHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcC-CCEE
Confidence 455678888775 69999988888777777765433 35668888889873 222 22333221 2367
Q ss_pred EEEccChhH
Q 027747 78 CLIAPTLSI 86 (219)
Q Consensus 78 vv~spNfSl 86 (219)
++..||++-
T Consensus 151 v~~gp~~a~ 159 (354)
T 1x0v_A 151 VLMGANIAS 159 (354)
T ss_dssp EEECSCCHH
T ss_pred EEECCCcHH
Confidence 888899875
No 130
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=67.30 E-value=21 Score=29.36 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=23.6
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|. |+.-..++...+.++.+.+.|+|+|.--+
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 58 GVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDR 91 (313)
T ss_dssp TCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESS
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECC
Confidence 6884 44555566667788888889999887544
No 131
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=66.96 E-value=10 Score=27.56 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=51.4
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCce--EEEccChhHHHHHHHHHHHHHh
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG--CLIAPTLSIGSILLQQAAISAS 99 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~--vv~spNfSlGv~ll~~~~~~aa 99 (219)
-+=--|+..-+.+.++.+..+|+|+|+=..|-++.+..++..-+++.++. ++-|..----..-..++++.+.
T Consensus 30 yirtatssqdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdpeeltqrvreflktag 103 (112)
T 2lnd_A 30 YIRTATSSQDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDPEELTQRVREFLKTAG 103 (112)
T ss_dssp TEEEECSHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred eeeeccchhhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCHHHHHHHHHHHHHhcc
Confidence 34455677778999999999999999999999998888888777766664 4555543332233345555554
No 132
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=66.60 E-value=2.9 Score=36.08 Aligned_cols=73 Identities=10% Similarity=0.136 Sum_probs=47.4
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhc---cCceEEEccC
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK---ASMGCLIAPT 83 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~---~~~~vv~spN 83 (219)
+.+.+++++ +. .+|+||=...+..+.+.++.....+..+|.-++|++.++.+.+.+...+ ...+++..||
T Consensus 69 ~~~~~~~~~-~~------~aDvVil~vk~~~~~~v~~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~ 141 (335)
T 1z82_A 69 VRATNDLEE-IK------KEDILVIAIPVQYIREHLLRLPVKPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPS 141 (335)
T ss_dssp SEEESCGGG-CC------TTEEEEECSCGGGHHHHHTTCSSCCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSC
T ss_pred EEEeCCHHH-hc------CCCEEEEECCHHHHHHHHHHhCcCCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCc
Confidence 455667666 43 6899998888877777765432246677777779887543334333221 2367888999
Q ss_pred hhH
Q 027747 84 LSI 86 (219)
Q Consensus 84 fSl 86 (219)
+..
T Consensus 142 ~~~ 144 (335)
T 1z82_A 142 HAE 144 (335)
T ss_dssp CHH
T ss_pred cHH
Confidence 865
No 133
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=66.51 E-value=8.6 Score=33.26 Aligned_cols=23 Identities=4% Similarity=-0.070 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHcCCc--EEEecCC
Q 027747 36 STVYDNVKQATAFGMR--SVVYVPH 58 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p--~ViGTTG 58 (219)
+++..++++.++.|+. +|.||||
T Consensus 37 ~~l~~lv~~li~~Gv~gl~v~GttG 61 (304)
T 3cpr_A 37 AAGREVAAYLVDKGLDSLVLAGTTG 61 (304)
T ss_dssp HHHHHHHHHHHHTTCCEEEESSTTT
T ss_pred HHHHHHHHHHHHcCCCEEEECcccc
Confidence 4556666666666664 2346666
No 134
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=66.19 E-value=8.3 Score=33.12 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=9.0
Q ss_pred CCCCCcHHHHHHH
Q 027747 114 ARDFPSPDATQIA 126 (219)
Q Consensus 114 K~DaPSGTA~~la 126 (219)
..|.+.-|-.+|+
T Consensus 139 g~~l~~~~~~~La 151 (294)
T 2ehh_A 139 CVEISVDTMFKLA 151 (294)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CcCCCHHHHHHHH
Confidence 6676667777766
No 135
>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*
Probab=65.71 E-value=7 Score=34.50 Aligned_cols=42 Identities=7% Similarity=-0.168 Sum_probs=29.0
Q ss_pred HHHHHhcccCCCCCcEEEECCChhhH-HHHHHHHHHcCCcEEEe-cCCCC
Q 027747 13 LTMVLGSISQSKARAVVIDFTDASTV-YDNVKQATAFGMRSVVY-VPHIQ 60 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~p~~~-~~~~~~~~~~g~p~ViG-TTG~~ 60 (219)
.++.+. .+|+|||-+..... ...-++|.++++|+|.| +.||.
T Consensus 119 ~~~~~~------~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G~~ 162 (346)
T 1y8q_A 119 PESFFT------QFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYH 162 (346)
T ss_dssp CHHHHT------TCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEBTE
T ss_pred hHHHhc------CCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeecccE
Confidence 355664 68999988765544 44557888899999964 44553
No 136
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=65.24 E-value=8.1 Score=33.23 Aligned_cols=13 Identities=0% Similarity=-0.072 Sum_probs=7.5
Q ss_pred CCCCCcHHHHHHH
Q 027747 114 ARDFPSPDATQIA 126 (219)
Q Consensus 114 K~DaPSGTA~~la 126 (219)
+.|.+.-|-.+|+
T Consensus 146 g~~l~~~~~~~La 158 (294)
T 3b4u_A 146 MVTLSVELVGRLK 158 (294)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CcCCCHHHHHHHH
Confidence 5555555555555
No 137
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=65.04 E-value=6.4 Score=34.36 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHcCCc--EEEecCC
Q 027747 36 STVYDNVKQATAFGMR--SVVYVPH 58 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p--~ViGTTG 58 (219)
+++..++++.++.|+. +|.||||
T Consensus 44 ~~l~~lv~~li~~Gv~Gl~v~GtTG 68 (314)
T 3qze_A 44 DSLAKLVDFHLQEGTNAIVAVGTTG 68 (314)
T ss_dssp HHHHHHHHHHHHHTCCEEEESSGGG
T ss_pred HHHHHHHHHHHHcCCCEEEECcccc
Confidence 4555555555565554 3345665
No 138
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=64.82 E-value=5.2 Score=30.30 Aligned_cols=41 Identities=5% Similarity=0.072 Sum_probs=30.3
Q ss_pred HHHHH-cCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 43 KQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 43 ~~~~~-~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
..+++ .++|.||=|-|+.+++ .+.++|+++++|++.++--+
T Consensus 67 l~a~~~~~~~~iIlt~g~~~~~--~i~~~A~~~~ipvl~t~~~T 108 (139)
T 2ioj_A 67 LTALEMPNVRCLILTGNLEPVQ--LVLTKAEERGVPVILTGHDT 108 (139)
T ss_dssp HHHTTCTTEEEEEEETTCCCCH--HHHHHHHHHTCCEEECSSCH
T ss_pred HHHHhCCCCcEEEEcCCCCCCH--HHHHHHHHCCCeEEEECCCH
Confidence 35566 7888888888887753 56677778889988877443
No 139
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=64.65 E-value=11 Score=34.90 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=40.4
Q ss_pred CHHHHHhcccCCCCCc-EEEECCChhhHHHHHHHHHHcCCcEEEecC-----------CCChhhH-HHHHHHhhccCceE
Q 027747 12 DLTMVLGSISQSKARA-VVIDFTDASTVYDNVKQATAFGMRSVVYVP-----------HIQLETV-SALSAFCDKASMGC 78 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~D-VvIDFS~p~~~~~~~~~~~~~g~p~ViGTT-----------G~~~~~~-~~l~~~a~~~~~~v 78 (219)
++.++|...-+....- .-|...+++.+...++.|.+.+.|+++.+| |++++.+ ..+++++++.++|+
T Consensus 7 ~mkelL~~ak~g~~~gi~av~~~n~e~i~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv 86 (450)
T 3txv_A 7 HLIDIARWSERPGPRGIPSICSAHPLVIEAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPR 86 (450)
T ss_dssp --------------CCEEEECCCCHHHHHHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCG
T ss_pred CHHHHHHHHHhCCCcEEEEeCcCCHHHHHHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCc
Confidence 5666765321111122 456667999999999999999999999765 3344454 45677888888993
No 140
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=64.65 E-value=22 Score=29.10 Aligned_cols=35 Identities=3% Similarity=0.075 Sum_probs=24.5
Q ss_pred CCcEEE-ECCChhhHHHHHHHHHHcCCcEEEecCCC
Q 027747 25 ARAVVI-DFTDASTVYDNVKQATAFGMRSVVYVPHI 59 (219)
Q Consensus 25 ~~DVvI-DFS~p~~~~~~~~~~~~~g~p~ViGTTG~ 59 (219)
.+|.+| --..++.....++.+.+.|+|+|.--+..
T Consensus 61 ~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~ 96 (297)
T 3rot_A 61 YPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRP 96 (297)
T ss_dssp CCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCC
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 688544 44555666778888888999998765443
No 141
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=64.54 E-value=8.4 Score=33.30 Aligned_cols=13 Identities=0% Similarity=0.087 Sum_probs=7.3
Q ss_pred CCCCCcHHHHHHH
Q 027747 114 ARDFPSPDATQIA 126 (219)
Q Consensus 114 K~DaPSGTA~~la 126 (219)
+.|.+.-|-.+|+
T Consensus 151 g~~l~~~~~~~La 163 (301)
T 1xky_A 151 IVQISVDTVVRLS 163 (301)
T ss_dssp SSCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5555555555554
No 142
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=64.37 E-value=5.1 Score=34.99 Aligned_cols=23 Identities=4% Similarity=0.024 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHcCCc--EEEecCC
Q 027747 36 STVYDNVKQATAFGMR--SVVYVPH 58 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p--~ViGTTG 58 (219)
+++..++++.++.|+. +|.||||
T Consensus 45 ~~l~~lv~~li~~Gv~Gi~v~GtTG 69 (315)
T 3na8_A 45 PALGRSIERLIDGGVHAIAPLGSTG 69 (315)
T ss_dssp HHHHHHHHHHHHTTCSEEECSSGGG
T ss_pred HHHHHHHHHHHHcCCCEEEECcccc
Confidence 4455555555555553 3345555
No 143
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=64.31 E-value=8 Score=36.69 Aligned_cols=70 Identities=7% Similarity=-0.044 Sum_probs=50.8
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh-----HH--HHHHHHHHHHHhh
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS-----IG--SILLQQAAISASF 100 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS-----lG--v~ll~~~~~~aa~ 100 (219)
+.||=++|+++...++.| .|.++|=-.+|.+ +.++.+-.++.+++.|+|+-++=. .. ...+.+.++.+.+
T Consensus 387 isIDT~~~~v~eaal~~~--~G~~iINdis~~~-~~~~~~~~~~~~~g~~vV~m~~~~~~p~t~~~~~~~l~~~~~~a~~ 463 (566)
T 1q7z_A 387 LSLDIQNVDLTERALRAY--PGRSLFNSAKVDE-EELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILER 463 (566)
T ss_dssp EEEECCCHHHHHHHHHHC--SSCCEEEEEESCH-HHHHHHHHHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhc--CCCCEEEECCcch-hhHHHHHHHHHHhCCeEEEEeCCCCCcCCHHHHHHHHHHHHHHHHH
Confidence 899999999888777766 5999998989886 555677777788899999877531 11 4455555555544
No 144
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=64.00 E-value=5.9 Score=29.94 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=35.4
Q ss_pred cEEEECCCh---hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 27 AVVIDFTDA---STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 27 DVvIDFS~p---~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
=||||++.- .-....+..+.++|+.+ +|-+|.+++ .+++++.+.+.|++-+.
T Consensus 49 PVVlDl~~l~~~~dl~~L~~~l~~~gl~~-vGV~g~~~~---~~~~~a~~~GLp~l~~~ 103 (120)
T 3ghf_A 49 PVVINVSGLESPVNWPELHKIVTSTGLRI-IGVSGCKDA---SLKVEIDRMGLPLLTEG 103 (120)
T ss_dssp EEEEEEEECCSSCCHHHHHHHHHTTTCEE-EEEESCCCH---HHHHHHHHHTCCEECCC
T ss_pred cEEEEccccCChHHHHHHHHHHHHcCCEE-EEEeCCCcH---HHHHHHHHCCCCccCCC
Confidence 488988753 34677778888888876 588887764 23455555778877443
No 145
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=63.99 E-value=33 Score=27.68 Aligned_cols=34 Identities=9% Similarity=-0.042 Sum_probs=23.5
Q ss_pred CCCcEEEEC-CChhhHHHHHHHHHHcCCcEEEecC
Q 027747 24 KARAVVIDF-TDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 24 ~~~DVvIDF-S~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
..+|.+|=+ ..++...+.++.+.+.|+|+|.--+
T Consensus 68 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~ 102 (304)
T 3gbv_A 68 EQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDS 102 (304)
T ss_dssp TCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESS
T ss_pred cCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 468855544 3455667778888888999887544
No 146
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=63.34 E-value=8.7 Score=32.02 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=19.9
Q ss_pred CCcEEEECCCh-hhHHHHHHHHHHcCCcEEEec
Q 027747 25 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 25 ~~DVvIDFS~p-~~~~~~~~~~~~~g~p~ViGT 56 (219)
.+|+|||-+.. +.-....+.|.+.|+|+|.|.
T Consensus 121 ~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 153 (249)
T 1jw9_B 121 EHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGA 153 (249)
T ss_dssp TSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 57777777643 333344466677777777754
No 147
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=63.33 E-value=8.1 Score=33.12 Aligned_cols=46 Identities=7% Similarity=-0.019 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHHH-hh--ccCceEEE
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSAF-CD--KASMGCLI 80 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~~-a~--~~~~~vv~ 80 (219)
.+++..++++.++.|+. +|.|||| ++.++..++-+. ++ ..++|++.
T Consensus 21 ~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~ 75 (291)
T 3a5f_A 21 FDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIA 75 (291)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 35566777777777764 2457776 555554443322 21 13466654
No 148
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=62.74 E-value=7.6 Score=33.64 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHHHhhcc---CceEEE
Q 027747 34 DASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSAFCDKA---SMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~~a~~~---~~~vv~ 80 (219)
..+++..++++.++.|+. +|.|||| ++.++..++-+.+.+. ++|++.
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpVia 86 (306)
T 1o5k_A 31 DLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIV 86 (306)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEE
No 149
>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*
Probab=62.71 E-value=20 Score=29.43 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=35.5
Q ss_pred CCcEEEECCChh-hHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 25 ARAVVIDFTDAS-TVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 25 ~~DVvIDFS~p~-~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.+|+||-.+.+. .+.+.++...+ .+..+|..++ ......+.|.+...+.++.++-+|++
T Consensus 55 ~~D~vi~~v~~~~~~~~v~~~l~~~l~~~~~vv~~s~-~~~~~~~~l~~~~~~~g~~~~~~p~~ 117 (289)
T 2cvz_A 55 EARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATS-GEPEASRRLAERLREKGVTYLDAPVS 117 (289)
T ss_dssp GCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEECSC-CCHHHHHHHHHHHHTTTEEEEECCEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHHhhCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCEEEEecCC
Confidence 589999877645 36655544322 3444444444 44455567777765556777777765
No 150
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=62.34 E-value=9.4 Score=32.74 Aligned_cols=47 Identities=4% Similarity=0.057 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHH-cCCc--EEEecCC----CChhhHHHHHHHhhc---cCceEEE
Q 027747 34 DASTVYDNVKQATA-FGMR--SVVYVPH----IQLETVSALSAFCDK---ASMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~-~g~p--~ViGTTG----~~~~~~~~l~~~a~~---~~~~vv~ 80 (219)
..+++..++++.++ .|+. +|.|||| ++.++..++-+.+.+ .++|++.
T Consensus 22 D~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 78 (293)
T 1f6k_A 22 NEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIA 78 (293)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEE
No 151
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=62.27 E-value=38 Score=23.93 Aligned_cols=57 Identities=4% Similarity=0.035 Sum_probs=35.0
Q ss_pred ccccccCHHHHHhcccCCCCCc-EEEECCCh-hh-HHHHHHHHHH----cCCcEEEecCCCChh
Q 027747 6 EIPVMSDLTMVLGSISQSKARA-VVIDFTDA-ST-VYDNVKQATA----FGMRSVVYVPHIQLE 62 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p-~~-~~~~~~~~~~----~g~p~ViGTTG~~~~ 62 (219)
.+....+.++++....+...+| |++|+..| +. -.+.++...+ ..+|+|+=|.--+.+
T Consensus 31 ~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~ 94 (140)
T 3lua_A 31 DFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPG 94 (140)
T ss_dssp EEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHH
T ss_pred cEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHH
Confidence 3445678888887543325689 68899988 42 3455555444 467777765544443
No 152
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=61.63 E-value=52 Score=26.37 Aligned_cols=33 Identities=6% Similarity=0.095 Sum_probs=25.1
Q ss_pred CCcEEE-ECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVI-DFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvI-DFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|.+| --..++...+.++.+.+.|+|+|.--+
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 61 KPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDT 94 (291)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESC
T ss_pred CCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecC
Confidence 688655 444556778889999999999987544
No 153
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=61.34 E-value=39 Score=27.15 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=22.7
Q ss_pred CCcEEE-ECCChhhHHHHHHHHHHcCCcEEEecCC
Q 027747 25 ARAVVI-DFTDASTVYDNVKQATAFGMRSVVYVPH 58 (219)
Q Consensus 25 ~~DVvI-DFS~p~~~~~~~~~~~~~g~p~ViGTTG 58 (219)
.+|.+| --..++...+.++.+.+.|+|+|.--+.
T Consensus 64 ~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~ 98 (293)
T 3l6u_A 64 KVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRM 98 (293)
T ss_dssp TCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred CCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCC
Confidence 678544 3344555567788888889998875443
No 154
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=61.09 E-value=33 Score=27.92 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|.+|=+. .++...+.++.+.+.|+|+|.--+
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 94 (305)
T 3g1w_A 61 NPAGIAISAIDPVELTDTINKAVDAGIPIVLFDS 94 (305)
T ss_dssp CCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESS
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECC
Confidence 688655443 445556778888888999887544
No 155
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Probab=61.02 E-value=12 Score=30.48 Aligned_cols=53 Identities=4% Similarity=-0.027 Sum_probs=39.7
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH--cCCcEEEecCCCChhh
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA--FGMRSVVYVPHIQLET 63 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~--~g~p~ViGTTG~~~~~ 63 (219)
.|+.+.++.++++. .+|+||=...|..+.+.++.... .+..+|+-++|++.+.
T Consensus 44 ~g~~~~~~~~~~~~------~~D~vi~~v~~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~ 98 (262)
T 2rcy_A 44 TTLNYMSSNEELAR------HCDIIVCAVKPDIAGSVLNNIKPYLSSKLLISICGGLNIGK 98 (262)
T ss_dssp SSSEECSCHHHHHH------HCSEEEECSCTTTHHHHHHHSGGGCTTCEEEECCSSCCHHH
T ss_pred CceEEeCCHHHHHh------cCCEEEEEeCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHH
Confidence 35667778888876 59999988888888887765443 2556888889998854
No 156
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=61.01 E-value=17 Score=30.27 Aligned_cols=72 Identities=17% Similarity=0.081 Sum_probs=44.0
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChh-hHHHHH---HHH---HHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDAS-TVYDNV---KQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~-~~~~~~---~~~---~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+.+.+++++++. .+|+||-...+. .+.+.+ +.. +..+..+| -++..++.....+.+...+.++.+
T Consensus 44 g~~~~~~~~~~~~------~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv-~~st~~~~~~~~~~~~~~~~g~~~ 116 (287)
T 3pdu_A 44 GARQASSPAEVCA------ACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYI-DMSTVDDETSTAIGAAVTARGGRF 116 (287)
T ss_dssp TCEECSCHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEE-ECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CCeecCCHHHHHH------cCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEE-ECCCCCHHHHHHHHHHHHHcCCEE
Confidence 4566778888886 589888666543 555555 222 23344444 444455666667776666666766
Q ss_pred EEccCh
Q 027747 79 LIAPTL 84 (219)
Q Consensus 79 v~spNf 84 (219)
+-+|.+
T Consensus 117 ~~~pv~ 122 (287)
T 3pdu_A 117 LEAPVS 122 (287)
T ss_dssp EECCEE
T ss_pred EECCcc
Confidence 666644
No 157
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Probab=60.50 E-value=21 Score=32.81 Aligned_cols=75 Identities=4% Similarity=-0.072 Sum_probs=47.1
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCCh-hhHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p-~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
|+..+.++++++... ..+|+||=...+ ..+.+.++.... .|..+|.++||...+ ..++.+...+.++.++-+
T Consensus 62 gi~~~~s~~e~v~~l---~~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~-t~~l~~~l~~~g~~~v~~ 137 (480)
T 2zyd_A 62 KLVPYYTVKEFVESL---ETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQD-TIRRNRELSAEGFNFIGT 137 (480)
T ss_dssp CEEECSSHHHHHHTB---CSSCEEEECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHH-HHHHHHHHHHTTCEEEEE
T ss_pred CeEEeCCHHHHHhCC---CCCCEEEEECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHH-HHHHHHHHHHCCCCeeCC
Confidence 566778898887611 138988866555 467777765443 466688888888543 334555554456666656
Q ss_pred cCh
Q 027747 82 PTL 84 (219)
Q Consensus 82 pNf 84 (219)
|++
T Consensus 138 pv~ 140 (480)
T 2zyd_A 138 GVS 140 (480)
T ss_dssp EEE
T ss_pred ccc
Confidence 654
No 158
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Probab=60.39 E-value=7.4 Score=33.87 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=37.8
Q ss_pred Cccc-cccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHc--CCcEEEec
Q 027747 5 LEIP-VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAF--GMRSVVYV 56 (219)
Q Consensus 5 ~~~~-v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~--g~p~ViGT 56 (219)
+|++ .+++.+++++.. +...+|+|++-|-++...+++..|++. |+++++=+
T Consensus 51 ~g~~~~~~~~e~ll~~~-~~~~iDvV~~atp~~~h~~~a~~al~a~~Gk~Vi~ek 104 (312)
T 1nvm_B 51 MGVTTTYAGVEGLIKLP-EFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLT 104 (312)
T ss_dssp TTCCEESSHHHHHHHSG-GGGGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cCCCcccCCHHHHHhcc-CCCCCcEEEECCChHHHHHHHHHHHHhCCCCEEEEcC
Confidence 3444 356778887520 002579999999999999999999999 99987644
No 159
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=59.70 E-value=13 Score=32.18 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHcCCcE--EEecCC
Q 027747 36 STVYDNVKQATAFGMRS--VVYVPH 58 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~--ViGTTG 58 (219)
+++..++++.++.|+.- |.||||
T Consensus 32 ~~l~~lv~~li~~Gv~Gl~v~GtTG 56 (303)
T 2wkj_A 32 ASLRRLVQFNIQQGIDGLYVGGSTG 56 (303)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSTTT
T ss_pred HHHHHHHHHHHHcCCCEEEECeecc
Confidence 44555566666665532 346665
No 160
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=59.60 E-value=7.9 Score=33.81 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHHHhhcc---CceEEE
Q 027747 34 DASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSAFCDKA---SMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~~a~~~---~~~vv~ 80 (219)
..+++..++++.++.|+. +|.|||| ++.++..++-+.+.+. ++||+.
T Consensus 41 D~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpVia 96 (315)
T 3si9_A 41 DEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVA 96 (315)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEE
No 161
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*
Probab=59.36 E-value=28 Score=31.77 Aligned_cols=75 Identities=9% Similarity=0.007 Sum_probs=47.8
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCCh-hhHHHHHHHH---HHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p-~~~~~~~~~~---~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
++..+.++++++... ..+|+||=...+ ..+.+.++.. ++.|..+|.++||... ...++.+...+.++.++-+
T Consensus 52 gi~~~~s~~e~v~~l---~~aDvVilavp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~-~~~~l~~~l~~~g~~~v~~ 127 (474)
T 2iz1_A 52 NLVFTKTLEEFVGSL---EKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFP-DTMRRNAELADSGINFIGT 127 (474)
T ss_dssp CEEECSSHHHHHHTB---CSSCEEEECCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHTTTSSCEEEEE
T ss_pred CeEEeCCHHHHHhhc---cCCCEEEEEccCchHHHHHHHHHHhhCCCCCEEEECCCCCHH-HHHHHHHHHHHCCCeEECC
Confidence 566778898887621 248988877766 4566666543 3356777878888744 3345555555556666656
Q ss_pred cCh
Q 027747 82 PTL 84 (219)
Q Consensus 82 pNf 84 (219)
|++
T Consensus 128 pv~ 130 (474)
T 2iz1_A 128 GVS 130 (474)
T ss_dssp EEC
T ss_pred CCC
Confidence 664
No 162
>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A
Probab=58.56 E-value=5.4 Score=38.49 Aligned_cols=42 Identities=5% Similarity=0.033 Sum_probs=32.3
Q ss_pred HHHHHhcccCCCCCcEEEECCCh-hhHHHHHHHHHHcCCcEEEecCCCC
Q 027747 13 LTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQ 60 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~p-~~~~~~~~~~~~~g~p~ViGTTG~~ 60 (219)
+++.+. .+|+|||-+.. ++-...-+.|.++++|+|.++.||+
T Consensus 425 l~~ll~------~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aalG~~ 467 (615)
T 4gsl_A 425 LRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGFD 467 (615)
T ss_dssp HHHHHH------HCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEEECSS
T ss_pred HHHHhh------cCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEEccce
Confidence 455665 58999998855 4445566889999999999988885
No 163
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=58.36 E-value=26 Score=30.30 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHcCCcE--EEecCC
Q 027747 36 STVYDNVKQATAFGMRS--VVYVPH 58 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~--ViGTTG 58 (219)
+++..++++.++.|+.- |.||||
T Consensus 33 ~~l~~lv~~li~~Gv~Gl~v~GtTG 57 (316)
T 3e96_A 33 HHYKETVDRIVDNGIDVIVPCGNTS 57 (316)
T ss_dssp HHHHHHHHHHHTTTCCEECTTSGGG
T ss_pred HHHHHHHHHHHHcCCCEEEeCcccc
Confidence 45666666666666643 246666
No 164
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=58.13 E-value=11 Score=31.48 Aligned_cols=32 Identities=22% Similarity=0.184 Sum_probs=19.5
Q ss_pred CCcEEEECCCh-hhHHHHHHHHHHcCCcEEEec
Q 027747 25 ARAVVIDFTDA-STVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 25 ~~DVvIDFS~p-~~~~~~~~~~~~~g~p~ViGT 56 (219)
.+|+|||-+.. +.-...-++|.+.++|+|.|.
T Consensus 118 ~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~ 150 (251)
T 1zud_1 118 RADVVLDCTDNMATRQEINAACVALNTPLITAS 150 (251)
T ss_dssp HCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 47777776543 333344466667777777654
No 165
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=58.11 E-value=61 Score=29.48 Aligned_cols=70 Identities=3% Similarity=-0.122 Sum_probs=38.5
Q ss_pred CCCc-EEEECC-------C-hhhHHHHHHHHHH--cCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHH
Q 027747 24 KARA-VVIDFT-------D-ASTVYDNVKQATA--FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQ 92 (219)
Q Consensus 24 ~~~D-VvIDFS-------~-p~~~~~~~~~~~~--~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~ 92 (219)
...| |+|+++ . ++.....++...+ .++|+|+...|.+..+ +..+.+ ++.++|++ ++..-.+..+.
T Consensus 367 p~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~~~-~~~~~L-~~~Gip~~--~spe~Av~al~ 442 (457)
T 2csu_A 367 PNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSE-KAKELL-EKNGIPTY--ERPEDVASAAY 442 (457)
T ss_dssp TTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTH-HHHHHH-HTTTCCEE--SSHHHHHHHHH
T ss_pred CCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcchH-HHHHHH-HhCCCCcc--CCHHHHHHHHH
Confidence 4678 566663 2 2333445555554 7899999766543221 122222 34689988 45555555555
Q ss_pred HHHHH
Q 027747 93 QAAIS 97 (219)
Q Consensus 93 ~~~~~ 97 (219)
++++.
T Consensus 443 ~l~~~ 447 (457)
T 2csu_A 443 ALVEQ 447 (457)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 166
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=58.10 E-value=55 Score=27.42 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=42.4
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCC-hhhHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~-p~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
|+...+++++++ . +|+||-... |..+.+.++...+ .+.-+|..+| ..+...+++.+...+.++.++-+
T Consensus 58 g~~~~~~~~~~~------~-aDvvi~~vp~~~~~~~v~~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~g~~~~~~ 129 (296)
T 3qha_A 58 GATLADSVADVA------A-ADLIHITVLDDAQVREVVGELAGHAKPGTVIAIHST-ISDTTAVELARDLKARDIHIVDA 129 (296)
T ss_dssp TCEECSSHHHHT------T-SSEEEECCSSHHHHHHHHHHHHTTCCTTCEEEECSC-CCHHHHHHHHHHHGGGTCEEEEC
T ss_pred CCEEcCCHHHHH------h-CCEEEEECCChHHHHHHHHHHHHhcCCCCEEEEeCC-CCHHHHHHHHHHHHHcCCEEEeC
Confidence 456677888875 3 898876554 4566666655443 3444554444 45666667777666666666655
Q ss_pred cC
Q 027747 82 PT 83 (219)
Q Consensus 82 pN 83 (219)
|-
T Consensus 130 pv 131 (296)
T 3qha_A 130 PV 131 (296)
T ss_dssp CE
T ss_pred CC
Confidence 53
No 167
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=57.67 E-value=34 Score=28.95 Aligned_cols=18 Identities=11% Similarity=0.056 Sum_probs=10.8
Q ss_pred ChhhHHHHHHHHHHcCCc
Q 027747 34 DASTVYDNVKQATAFGMR 51 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p 51 (219)
.++...+.++.+.+.|..
T Consensus 104 ~~~~~~~~a~~~~~~g~d 121 (311)
T 1jub_A 104 SAAENIAMLKKIQESDFS 121 (311)
T ss_dssp SHHHHHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHHhcCCC
Confidence 456666666666666644
No 168
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=57.62 E-value=21 Score=30.40 Aligned_cols=13 Identities=15% Similarity=0.199 Sum_probs=8.4
Q ss_pred CCCCCcHHHHHHH
Q 027747 114 ARDFPSPDATQIA 126 (219)
Q Consensus 114 K~DaPSGTA~~la 126 (219)
..|.+.-|-.+|+
T Consensus 139 g~~l~~~~~~~La 151 (289)
T 2yxg_A 139 AVNLEPKTVKLLA 151 (289)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CcCCCHHHHHHHH
Confidence 5666666666666
No 169
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=57.48 E-value=19 Score=32.52 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=44.4
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecC-----------CCChhhHHHHHHHhhccCceEEEccChhHHHHHH
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVP-----------HIQLETVSALSAFCDKASMGCLIAPTLSIGSILL 91 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTT-----------G~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll 91 (219)
+++.+.+.++.+.+.|..+|.+-| |+..+.+..|.+++++.++|++-.+=..-.+.++
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~~d~~~~~~l 222 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEIVTPADIEVA 222 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCSGGGHHHH
T ss_pred CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEecCCHHHHHHH
Confidence 567788888888888888887654 6667778888888888888888877666665554
No 170
>1vjp_A MYO-inositol-1-phosphate synthase-related protein; TM1419, structural genomics, JCSG, PSI, protein structure initiative; HET: NAD; 1.70A {Thermotoga maritima} PDB: 3cin_A*
Probab=57.43 E-value=16 Score=33.27 Aligned_cols=70 Identities=10% Similarity=0.110 Sum_probs=51.0
Q ss_pred CCcEEEECC---------Chh---------------hHHHHHHHHHH-----cCCcEEEecCCCChhhHHHHHHHhhccC
Q 027747 25 ARAVVIDFT---------DAS---------------TVYDNVKQATA-----FGMRSVVYVPHIQLETVSALSAFCDKAS 75 (219)
Q Consensus 25 ~~DVvIDFS---------~p~---------------~~~~~~~~~~~-----~g~p~ViGTTG~~~~~~~~l~~~a~~~~ 75 (219)
++||||.+. +.+ ++.-.+..|++ .|+|+|=||.-+... ...+.+++++++
T Consensus 135 ~~DVvIn~~STE~~~p~gs~~~l~~ai~~~~~~~i~aS~~YA~AAl~~~~~~aG~~fVN~~P~~ia~-~P~~~ela~~~g 213 (394)
T 1vjp_A 135 DPDVIVNTCTTEAFVPFGNKEDLLKAIENNDKERLTATQVYAYAAALYANKRGGAAFVNVIPTFIAN-DPAFVELAKENN 213 (394)
T ss_dssp CCSEEEECCCCCCCCCCSSHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHTCEEEEECSSSCSTT-CHHHHHHHHHTT
T ss_pred CCCEEEEecCccCCCCCCCHHHHHHHHhcCCCCccChHHHHHHHHHhhccccCCcceEecCCccccC-CHHHHHHHHHcC
Confidence 689999997 112 44455677888 999999999866532 256788888888
Q ss_pred ceEEEccChhHHHHHHHHHHH
Q 027747 76 MGCLIAPTLSIGSILLQQAAI 96 (219)
Q Consensus 76 ~~vv~spNfSlGv~ll~~~~~ 96 (219)
+|++ ---|-.|..+|...+.
T Consensus 214 vpi~-GDD~ktGqT~lks~La 233 (394)
T 1vjp_A 214 LVVF-GDDGATGATPFTADVL 233 (394)
T ss_dssp EEEE-CSSBSCSHHHHHHHHH
T ss_pred CCEE-ccccCCCCCchHHHHH
Confidence 8854 4559999999876443
No 171
>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}
Probab=57.35 E-value=13 Score=33.62 Aligned_cols=76 Identities=11% Similarity=0.142 Sum_probs=49.2
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhh-HHHHHHHH---HHcCCcEEEecCCCChhh-----H-HHHHHHhhccC
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDAST-VYDNVKQA---TAFGMRSVVYVPHIQLET-----V-SALSAFCDKAS 75 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~-~~~~~~~~---~~~g~p~ViGTTG~~~~~-----~-~~l~~~a~~~~ 75 (219)
.+.+++|++++++ .+|+|| |..|.. +.+.++.. +..+.++|.+|=|+.... + +.+.+... ..
T Consensus 104 ~i~~t~dl~~al~------~ad~ii-~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~-~~ 175 (391)
T 4fgw_A 104 NLVANPDLIDSVK------DVDIIV-FNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELG-IQ 175 (391)
T ss_dssp SEEEESCHHHHHT------TCSEEE-ECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHC-CE
T ss_pred CcEEeCCHHHHHh------cCCEEE-EECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhC-cc
Confidence 4667889999996 799888 555654 44555544 346788999999986321 1 23333321 34
Q ss_pred ceEEEccChhHHHH
Q 027747 76 MGCLIAPTLSIGSI 89 (219)
Q Consensus 76 ~~vv~spNfSlGv~ 89 (219)
+.++--|||+.-+.
T Consensus 176 ~~vLsGPs~A~EVa 189 (391)
T 4fgw_A 176 CGALSGANIATEVA 189 (391)
T ss_dssp EEEEECSCCHHHHH
T ss_pred ceeccCCchHHHhh
Confidence 56777899986653
No 172
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=57.12 E-value=47 Score=28.26 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=45.4
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCC-hhhHHHHHH---H--HHHcCCcEEEecCCCChhhHHHHHHHhhccCceEE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVK---Q--ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~-p~~~~~~~~---~--~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv 79 (219)
|+...+++++++. .+|+||-... |..+.+.+. . .+..+.-+|..+| .++...+.+.+..++.++.++
T Consensus 74 g~~~~~~~~e~~~------~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st-~~~~~~~~~~~~~~~~g~~~~ 146 (320)
T 4dll_A 74 GATIHEQARAAAR------DADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMAS-ITPREARDHAARLGALGIAHL 146 (320)
T ss_dssp TCEEESSHHHHHT------TCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEeeCCHHHHHh------cCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHcCCEEE
Confidence 5667788999886 6998886654 445555552 2 2334555555555 456666677766666777777
Q ss_pred EccCh
Q 027747 80 IAPTL 84 (219)
Q Consensus 80 ~spNf 84 (219)
-+|-+
T Consensus 147 ~~pv~ 151 (320)
T 4dll_A 147 DTPVS 151 (320)
T ss_dssp ECCEE
T ss_pred eCCCc
Confidence 77654
No 173
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=56.57 E-value=31 Score=29.26 Aligned_cols=59 Identities=5% Similarity=-0.018 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHcCCcEEEecC-----------CCChhhHHHHHHHhhccCceEEEccChhHHHHHHHH
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVP-----------HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 93 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTT-----------G~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~ 93 (219)
++.+.+.++.+.+.|..+|-+.| |+.++.+..|++++++.++|++-.+=....+..+.+
T Consensus 36 ~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~ 105 (262)
T 1zco_A 36 REQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMDTRHVELVAK 105 (262)
T ss_dssp HHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeCCHHhHHHHHh
Confidence 67888888888999998888765 333778888999999999999988877777666543
No 174
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=56.51 E-value=44 Score=29.18 Aligned_cols=69 Identities=10% Similarity=-0.054 Sum_probs=46.2
Q ss_pred EEE-ECCChhhHHHHHHHHHHcCC---cEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhh
Q 027747 28 VVI-DFTDASTVYDNVKQATAFGM---RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH 101 (219)
Q Consensus 28 VvI-DFS~p~~~~~~~~~~~~~g~---p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~ 101 (219)
+.| |-.+|+.=.+.++.|++.+. |+|=-.||... +.+-.++.+++.|++.-++-- ++.+.++++.+.+.
T Consensus 125 lsI~DT~~~~~~~~V~eaal~aga~~k~iINdvs~~~~---~~~~~~aa~~g~~vv~m~~~d--v~~l~~~~~~a~~~ 197 (310)
T 2h9a_B 125 LMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSATKDNY---KPIVATCMVHGHSVVASAPLD--INLSKQLNIMIMEM 197 (310)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEECTTTH---HHHHHHHHHHTCEEEEECSSC--HHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCHHHHHHHHHhCCCCCCEEEECCCCcc---HHHHHHHHHhCCCEEEEChhH--HHHHHHHHHHHHHC
Confidence 788 98455555555555555544 58888888743 466667777889998877532 37777777776654
No 175
>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}
Probab=56.36 E-value=36 Score=28.97 Aligned_cols=74 Identities=16% Similarity=0.136 Sum_probs=49.5
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEEC-CChhhHHHH----HHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEE
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDF-TDASTVYDN----VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDF-S~p~~~~~~----~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv 79 (219)
.|+.+.+++.++.. .+||||=. ..+..+.+. +......+.-+|.++| .+++.-.++.+.+.++++..+
T Consensus 47 ~G~~~~~s~~e~~~------~~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT-~~p~~~~~~~~~~~~~g~~~l 119 (297)
T 4gbj_A 47 LGATVVENAIDAIT------PGGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMST-ISPETSRQLAQVHEWYGAHYV 119 (297)
T ss_dssp TTCEECSSGGGGCC------TTCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSC-CCHHHHHHHHHHHHHTTCEEE
T ss_pred cCCeEeCCHHHHHh------cCCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCC-CChHHHHHHHHHHHhcCCcee
Confidence 46677788888875 68976643 444444443 2334445555666777 457777888888888899888
Q ss_pred EccChh
Q 027747 80 IAPTLS 85 (219)
Q Consensus 80 ~spNfS 85 (219)
=+|=+.
T Consensus 120 dapVsG 125 (297)
T 4gbj_A 120 GAPIFA 125 (297)
T ss_dssp ECCEEC
T ss_pred cCCcCC
Confidence 888654
No 176
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=56.36 E-value=22 Score=30.27 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=10.2
Q ss_pred HHHHHHHHcCCcEEEecCCCCh
Q 027747 40 DNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 40 ~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
+.++.+.+ ++|+|.||.+.+-
T Consensus 54 ~v~~~~~~-rvpviaGvg~~~t 74 (283)
T 2pcq_A 54 RGLRALRP-RKPFLVGLMEETL 74 (283)
T ss_dssp HHHHTCCC-SSCCEEEECCSSH
T ss_pred HHHHHHHh-CCcEEEeCCCCCH
Confidence 33444444 5555555555443
No 177
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=56.03 E-value=21 Score=30.59 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=47.8
Q ss_pred CccccccCHHHHHhcccCCCCCcEEE-ECCChhhHHHHHHH------HHHcCCcEEEecCCCChhhHHHHHHHhhccCce
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVI-DFTDASTVYDNVKQ------ATAFGMRSVVYVPHIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvI-DFS~p~~~~~~~~~------~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~ 77 (219)
.|..+.+++.++.. .+|+|| -.+.++.+.+.+.- .++.|.-+|-+|| .+++.-.++.+.++++++.
T Consensus 45 ~Ga~~a~s~~e~~~------~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT-~~p~~~~~~a~~~~~~G~~ 117 (300)
T 3obb_A 45 AGASAARSARDAVQ------GADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECST-IAPTSARKIHAAARERGLA 117 (300)
T ss_dssp TTCEECSSHHHHHT------TCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSC-CCHHHHHHHHHHHHTTTCE
T ss_pred cCCEEcCCHHHHHh------cCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCC-CCHHHHHHHHHHHHHcCCE
Confidence 35667778888875 688654 56777777776642 1233555666777 4566777888888788888
Q ss_pred EEEcc
Q 027747 78 CLIAP 82 (219)
Q Consensus 78 vv~sp 82 (219)
.|=+|
T Consensus 118 ~lDaP 122 (300)
T 3obb_A 118 MLDAP 122 (300)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 77766
No 178
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=55.71 E-value=48 Score=26.20 Aligned_cols=33 Identities=21% Similarity=0.095 Sum_probs=23.4
Q ss_pred C-CcEEEECC-ChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 A-RAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~-~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
. +|.+|=+. .++...+.++.+.+.|+|+|.--+
T Consensus 58 ~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~ 92 (276)
T 3ksm_A 58 APPDALILAPNSAEDLTPSVAQYRARNIPVLVVDS 92 (276)
T ss_dssp SCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESS
T ss_pred CCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEec
Confidence 5 88666444 345667788888899999887543
No 179
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=55.56 E-value=21 Score=31.04 Aligned_cols=51 Identities=10% Similarity=0.144 Sum_probs=39.3
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
=+.||=+.|+++...++. |.++|=-.+|++.+ +.+-+++.+++.|+++.++
T Consensus 117 piSIDT~~~~V~~aAl~a----Ga~iINdvsg~~~d--~~m~~~aa~~g~~vVlmh~ 167 (297)
T 1tx2_A 117 PISIDTYKAEVAKQAIEA----GAHIINDIWGAKAE--PKIAEVAAHYDVPIILMHN 167 (297)
T ss_dssp CEEEECSCHHHHHHHHHH----TCCEEEETTTTSSC--THHHHHHHHHTCCEEEECC
T ss_pred eEEEeCCCHHHHHHHHHc----CCCEEEECCCCCCC--HHHHHHHHHhCCcEEEEeC
Confidence 389999999987666654 99999999998632 2455566678899999887
No 180
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=54.98 E-value=14 Score=31.65 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCcEEE--ecCC----CChhhHHHHHHHhhcc---CceEEE
Q 027747 34 DASTVYDNVKQATAFGMRSVV--YVPH----IQLETVSALSAFCDKA---SMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~Vi--GTTG----~~~~~~~~l~~~a~~~---~~~vv~ 80 (219)
..+.+..++++.++.|+.-++ |||| ++.++..++-+.+.+. ++|++.
T Consensus 19 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 74 (292)
T 2vc6_A 19 DEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIA 74 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
No 181
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=54.93 E-value=30 Score=29.39 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=33.5
Q ss_pred EEEECC------------ChhhHHHHHHHHHHc-CCcEEEecC-CCChhhHHHHHHHhhccC-ceEEEccCh
Q 027747 28 VVIDFT------------DASTVYDNVKQATAF-GMRSVVYVP-HIQLETVSALSAFCDKAS-MGCLIAPTL 84 (219)
Q Consensus 28 VvIDFS------------~p~~~~~~~~~~~~~-g~p~ViGTT-G~~~~~~~~l~~~a~~~~-~~vv~spNf 84 (219)
+-|.|+ +|+.+.+.++...+. ++|+++-.+ +++.++..++-+.+.+.+ +-.+..+|.
T Consensus 126 iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~~~~~~~~~a~~~~~aG~~d~i~v~~~ 197 (314)
T 2e6f_A 126 LELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYFDIAHFDTAAAVLNEFPLVKFVTCVNS 197 (314)
T ss_dssp EEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCCCCHHHHHHHHHHHHTCTTEEEEEECCC
T ss_pred EEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 667777 334445555554443 677776544 356555555555555566 667766664
No 182
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=54.62 E-value=48 Score=28.92 Aligned_cols=46 Identities=7% Similarity=-0.057 Sum_probs=26.6
Q ss_pred hhhHHHHHHHHHHcCCcE--EEecCC----CChhhHHHHHHH-hhc--cCceEEE
Q 027747 35 ASTVYDNVKQATAFGMRS--VVYVPH----IQLETVSALSAF-CDK--ASMGCLI 80 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~--ViGTTG----~~~~~~~~l~~~-a~~--~~~~vv~ 80 (219)
.+.+..++++.++.|+.- |.|||| ++.++..++-+. ++. .++||+.
T Consensus 54 ~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia 108 (332)
T 2r8w_A 54 IEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMA 108 (332)
T ss_dssp HHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 356777777777777743 457887 555554443332 211 3577764
No 183
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=54.37 E-value=30 Score=29.34 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=42.6
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECC-ChhhHHHHH---HH---HHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFT-DASTVYDNV---KQ---ATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS-~p~~~~~~~---~~---~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
|+...+++++++. .+|+||=.. .|..+.+.+ +. .+..+. +|+-++..++....++.+...+.++.+
T Consensus 64 g~~~~~~~~~~~~------~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~-~vv~~st~~~~~~~~~~~~~~~~g~~~ 136 (310)
T 3doj_A 64 GASVCESPAEVIK------KCKYTIAMLSDPCAALSVVFDKGGVLEQICEGK-GYIDMSTVDAETSLKINEAITGKGGRF 136 (310)
T ss_dssp TCEECSSHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTC-EEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred CCeEcCCHHHHHH------hCCEEEEEcCCHHHHHHHHhCchhhhhccCCCC-EEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence 5667788888886 589877655 455666555 22 223344 445455566666667776665566655
Q ss_pred EEcc
Q 027747 79 LIAP 82 (219)
Q Consensus 79 v~sp 82 (219)
+-+|
T Consensus 137 v~~p 140 (310)
T 3doj_A 137 VEGP 140 (310)
T ss_dssp EECC
T ss_pred EeCC
Confidence 5444
No 184
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=54.30 E-value=33 Score=23.82 Aligned_cols=55 Identities=9% Similarity=0.048 Sum_probs=30.8
Q ss_pred cccccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHHc---CCcEEEecCCCChh
Q 027747 7 IPVMSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATAF---GMRSVVYVPHIQLE 62 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~~---g~p~ViGTTG~~~~ 62 (219)
+....+.++++....+ ..+| |++|...|+. -.+.++...+. ..+.|+-+|+.+.+
T Consensus 33 v~~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~ 92 (132)
T 3lte_A 33 VEIAHNGFDAGIKLST-FEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKA 92 (132)
T ss_dssp EEEESSHHHHHHHHHH-TCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSH
T ss_pred EEEeCCHHHHHHHHHh-cCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChH
Confidence 3345566666543322 3578 5788887753 24444444443 35666667776654
No 185
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=54.25 E-value=52 Score=23.62 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=28.8
Q ss_pred cccccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHHc--CCcEEEecC
Q 027747 7 IPVMSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATAF--GMRSVVYVP 57 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~~--g~p~ViGTT 57 (219)
+....+.++++....+ ..+| |++|...|+. -.+.++...+. .+|+|+-|.
T Consensus 34 v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 34 IITFTSPLDALEALKG-TSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp EEEESCHHHHHHHHTT-SCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEEC
T ss_pred EEEeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEec
Confidence 3446677777665433 3588 5789887752 23444444432 567666554
No 186
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=53.96 E-value=22 Score=30.40 Aligned_cols=47 Identities=6% Similarity=0.064 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCcEEE--ecCC----CChhhHHHHHHHhhc---cCceEEE
Q 027747 34 DASTVYDNVKQATAFGMRSVV--YVPH----IQLETVSALSAFCDK---ASMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~Vi--GTTG----~~~~~~~~l~~~a~~---~~~~vv~ 80 (219)
..+++..++++.++.|+.-++ |||| ++.++..++-+.+.+ .++|++.
T Consensus 20 D~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 75 (292)
T 2ojp_A 20 CRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIA 75 (292)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEE
No 187
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=53.86 E-value=41 Score=28.56 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=25.4
Q ss_pred hhhHHHHHHHHHHcCCcE--EEecCC----CChhhHHHHHHH
Q 027747 35 ASTVYDNVKQATAFGMRS--VVYVPH----IQLETVSALSAF 70 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~--ViGTTG----~~~~~~~~l~~~ 70 (219)
.+++..++++.++.|+.- |.|||| ++.++..++-+.
T Consensus 18 ~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~ 59 (286)
T 2r91_A 18 PELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDA 59 (286)
T ss_dssp HHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHH
Confidence 467788889999998863 459998 666665554443
No 188
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=53.80 E-value=43 Score=28.45 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=39.2
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHc--CCcEEEecCCCChhhHHHHHHHhhcc
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKA 74 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~--g~p~ViGTTG~~~~~~~~l~~~a~~~ 74 (219)
.|+...+++++++. .+|+||=...+....+.++...+. .-.+|+=+|...+.....+.+...+.
T Consensus 69 ~g~~~~~~~~e~~~------~aDvVi~~vp~~~~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~ 134 (312)
T 3qsg_A 69 LGVSCKASVAEVAG------ECDVIFSLVTAQAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRH 134 (312)
T ss_dssp TTCEECSCHHHHHH------HCSEEEECSCTTTHHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEeCCHHHHHh------cCCEEEEecCchhHHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence 36667788888876 589988777776666666554432 12355544455565555555554433
No 189
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=53.77 E-value=19 Score=31.26 Aligned_cols=51 Identities=8% Similarity=-0.010 Sum_probs=40.7
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
.=+-||=++|+++...++ .|.++|=-.+|++.+ .+-.++.+++.|+|+-++
T Consensus 98 vpiSIDT~~~~Va~aAl~----aGa~iINdVsg~~d~---~m~~~~a~~~~~vVlmh~ 148 (294)
T 2y5s_A 98 VPLSIDTYKPAVMRAALA----AGADLINDIWGFRQP---GAIDAVRDGNSGLCAMHM 148 (294)
T ss_dssp SCEEEECCCHHHHHHHHH----HTCSEEEETTTTCST---THHHHHSSSSCEEEEECC
T ss_pred CeEEEECCCHHHHHHHHH----cCCCEEEECCCCCch---HHHHHHHHhCCCEEEECC
Confidence 348999999998766655 499999999999732 556677789999999775
No 190
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Probab=53.73 E-value=38 Score=30.88 Aligned_cols=77 Identities=8% Similarity=-0.051 Sum_probs=48.3
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChh-hHHHHHHHH---HHcCCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDAS-TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~-~~~~~~~~~---~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
.++..+.++++++.+. ..+|+||=...+. .+.+.++.. ++.|..+|.++||...+ ..++.+...+.++.++-
T Consensus 49 ~gi~~~~~~~e~v~~l---~~aDvVilaVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~-~~~l~~~l~~~g~~~v~ 124 (482)
T 2pgd_A 49 TKVLGAHSLEEMVSKL---KKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRD-TMRRCRDLKDKGILFVG 124 (482)
T ss_dssp SSCEECSSHHHHHHHB---CSSCEEEECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHH-HHHHHHHHHHTTCEEEE
T ss_pred CCeEEeCCHHHHHhhc---cCCCEEEEeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHH-HHHHHHHHHHcCCeEeC
Confidence 3566778898887421 2589888766553 566666543 34567777788887643 23455554445666666
Q ss_pred ccChh
Q 027747 81 APTLS 85 (219)
Q Consensus 81 spNfS 85 (219)
+|++.
T Consensus 125 ~pv~g 129 (482)
T 2pgd_A 125 SGVSG 129 (482)
T ss_dssp EEEES
T ss_pred CCCCC
Confidence 67653
No 191
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=53.50 E-value=18 Score=34.20 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCcEEEecCCCC---hhhHHHHHHHhhccCceEEEccChhHHHHHHHHHH
Q 027747 38 VYDNVKQATAFGMRSVVYVPHIQ---LETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 95 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~~---~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~ 95 (219)
+..+++-..++|+|+|+.---|. +++++.++++|++.++++++|--|+.|-.=-..++
T Consensus 349 L~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~~~s~~wa~GG~G~~~LA 409 (543)
T 3do6_A 349 LRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELA 409 (543)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCEEEEECHHHHGGGGSHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHH
Confidence 45666777789999999966554 45788899999999999999999998854443333
No 192
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=53.49 E-value=15 Score=32.40 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCC--cEEEecCC----CChhhHHHHHHHhhcc---CceEEE
Q 027747 34 DASTVYDNVKQATAFGM--RSVVYVPH----IQLETVSALSAFCDKA---SMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~--p~ViGTTG----~~~~~~~~l~~~a~~~---~~~vv~ 80 (219)
..+++..++++.++.|+ =+|.|||| ++.++..++-+.+.+. ++||+.
T Consensus 50 D~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpVia 105 (343)
T 2v9d_A 50 DKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLI 105 (343)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
No 193
>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6
Probab=53.49 E-value=52 Score=26.63 Aligned_cols=57 Identities=19% Similarity=0.114 Sum_probs=37.8
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhc
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDK 73 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~ 73 (219)
+++++++. .+|+||=...|....+.+....+.-.++|+=+++.+....+.|.+...+
T Consensus 48 ~~~~~~~~------~aDvvi~~v~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~l~~~~~~ 104 (264)
T 1i36_A 48 ETSEEDVY------SCPVVISAVTPGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEK 104 (264)
T ss_dssp ECCHHHHH------TSSEEEECSCGGGHHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHCSS
T ss_pred CCHHHHHh------cCCEEEEECCCHHHHHHHHHHHHhcCcEEEEccCCCHHHHHHHHHHHhh
Confidence 45666665 6899998887766556565555443337777777777666677776643
No 194
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2
Probab=52.88 E-value=26 Score=31.39 Aligned_cols=74 Identities=4% Similarity=0.099 Sum_probs=52.1
Q ss_pred ccccccCHHHHHhcccCCCCCcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhH-----------------HHH
Q 027747 6 EIPVMSDLTMVLGSISQSKARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETV-----------------SAL 67 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~-----------------~~l 67 (219)
||---+++.++|+.. ....+-| .+++.+-+.+...++.|.+.+.|+++.++-...... ..+
T Consensus 13 gv~~~~~~~~ll~~A-~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~ga~~~a~~v 91 (357)
T 3qm3_A 13 GVISGDELNKIYDYA-KAEGFAIPAVNVVGTDSINAVLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHV 91 (357)
T ss_dssp EECCGGGHHHHHHHH-HHHTCCEEEEECCSHHHHHHHHHHHHHHTSCEEEEECHHHHHHHHCTTCTTHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHH-HHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccCccchhhHHHHHHHHHHHH
Confidence 555566777877642 1124454 799999999999999999999999998762111110 124
Q ss_pred HHHhhccCceEEE
Q 027747 68 SAFCDKASMGCLI 80 (219)
Q Consensus 68 ~~~a~~~~~~vv~ 80 (219)
+.++++.++||++
T Consensus 92 ~~~A~~~~VPVaL 104 (357)
T 3qm3_A 92 HLLAKAYGVPVIL 104 (357)
T ss_dssp HHHHHHHTCEEEE
T ss_pred HHHHHHCCCcEEE
Confidence 5677778899987
No 195
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=52.84 E-value=63 Score=23.97 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=39.7
Q ss_pred CCcEEEECCChhhHHHHH-HHHHH-cCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHH
Q 027747 25 ARAVVIDFTDASTVYDNV-KQATA-FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQ 93 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~-~~~~~-~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~ 93 (219)
.+|+||..+..+.....+ ..+.. ++...+++.+- +++..+.++ +.++. +++|....+-.+...
T Consensus 84 ~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~-~~~~~~~l~----~~G~~-vi~p~~~~a~~l~~~ 148 (155)
T 2g1u_A 84 KADMVFAFTNDDSTNFFISMNARYMFNVENVIARVY-DPEKIKIFE----ENGIK-TICPAVLMIEKVKEF 148 (155)
T ss_dssp GCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECS-SGGGHHHHH----TTTCE-EECHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEEC-CHHHHHHHH----HCCCc-EEcHHHHHHHHHHHH
Confidence 589999888776555544 44444 56666666552 233334443 36678 899988888665544
No 196
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=52.81 E-value=25 Score=27.43 Aligned_cols=49 Identities=8% Similarity=-0.083 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCcEEEecCCCC-hhhHHHHHHHhhccCceEEEccChhHH
Q 027747 38 VYDNVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~~-~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
+...++...+.+.|+++.=.|-. .+-.+.+.+++++.++||+-++ ++.|
T Consensus 24 v~~aa~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~-~gkg 73 (170)
T 3cf4_G 24 PEMAAKIISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATG-SSLA 73 (170)
T ss_dssp HHHHHHHHHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECT-TTHH
T ss_pred HHHHHHHHHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECc-ccCc
Confidence 56667777788999988777654 3446789999999999997653 3444
No 197
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=52.74 E-value=15 Score=34.97 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCcEEEecCCC---ChhhHHHHHHHhhccCceEEEccChhHHHH
Q 027747 38 VYDNVKQATAFGMRSVVYVPHI---QLETVSALSAFCDKASMGCLIAPTLSIGSI 89 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~---~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ 89 (219)
+..+++-..++|+|+|+.---| ++++++.++++|++.++++.++ |+-|-.
T Consensus 363 L~kHien~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~~~~~--wa~GG~ 415 (557)
T 3pzx_A 363 LEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALS--WAKGGE 415 (557)
T ss_dssp HHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHCCSSEEEEECH--HHHGGG
T ss_pred HHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEE--ecccch
Confidence 3455666778999999996555 4567888999999999988888 988743
No 198
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=52.72 E-value=5.6 Score=33.32 Aligned_cols=55 Identities=9% Similarity=0.000 Sum_probs=37.5
Q ss_pred CCcEEEECCChhhHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhccCceEE-EccCh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCL-IAPTL 84 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv-~spNf 84 (219)
.+|+||-...|..+.+.++.... .+..+|.++||.+.+. +.++. .+.+++ ..||+
T Consensus 67 ~aDvVi~av~~~~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~---l~~~~--~~~~~v~~~P~~ 125 (286)
T 3c24_A 67 EADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAG---VMPER--ADITYFIGHPCH 125 (286)
T ss_dssp TCSEEEECSCHHHHHHHHHHHGGGSCTTCEEEESCSHHHHHT---CSCCC--TTSEEEEEEECC
T ss_pred CCCEEEEcCCchHHHHHHHHHHHhCCCCCEEEECCCCchhHH---HHhhh--CCCeEEecCCCC
Confidence 69999999999888877766543 3556777888874433 33322 356777 77777
No 199
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=52.59 E-value=29 Score=25.16 Aligned_cols=17 Identities=6% Similarity=0.014 Sum_probs=8.6
Q ss_pred HHHHHHHHHHcCCcEEEe
Q 027747 38 VYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViG 55 (219)
+.+.+..|.+.|. +|.|
T Consensus 10 i~~~L~la~kagk-~v~G 26 (105)
T 3u5e_c 10 INQKLALVIKSGK-YTLG 26 (105)
T ss_dssp HHHHHHHHHTTSE-EEES
T ss_pred HHHHHHHHHHhCC-eeEC
Confidence 4455555555553 4443
No 200
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=52.22 E-value=42 Score=28.37 Aligned_cols=71 Identities=10% Similarity=-0.039 Sum_probs=42.2
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCC-hhhHHHHHH----HHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTD-ASTVYDNVK----QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~-p~~~~~~~~----~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
|+...+++++++. .+|+||-... +..+.+.+. .....|.-+| -++..++....++.+..++.++.++=
T Consensus 52 g~~~~~~~~e~~~------~aDvVi~~vp~~~~~~~v~~~~~l~~~~~g~ivi-d~st~~~~~~~~l~~~~~~~g~~~vd 124 (306)
T 3l6d_A 52 GAHLCESVKAALS------ASPATIFVLLDNHATHEVLGMPGVARALAHRTIV-DYTTNAQDEGLALQGLVNQAGGHYVK 124 (306)
T ss_dssp TCEECSSHHHHHH------HSSEEEECCSSHHHHHHHHTSTTHHHHTTTCEEE-ECCCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred CCeecCCHHHHHh------cCCEEEEEeCCHHHHHHHhcccchhhccCCCEEE-ECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence 4556778888886 5898886654 334555442 1233454444 44445566666777666666666666
Q ss_pred ccC
Q 027747 81 APT 83 (219)
Q Consensus 81 spN 83 (219)
+|-
T Consensus 125 apv 127 (306)
T 3l6d_A 125 GMI 127 (306)
T ss_dssp EEE
T ss_pred ccc
Confidence 543
No 201
>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*
Probab=52.19 E-value=11 Score=35.40 Aligned_cols=35 Identities=6% Similarity=-0.079 Sum_probs=26.3
Q ss_pred CCcEEEECCChhhH-HHHHHHHHHcCCcEEEe-cCCC
Q 027747 25 ARAVVIDFTDASTV-YDNVKQATAFGMRSVVY-VPHI 59 (219)
Q Consensus 25 ~~DVvIDFS~p~~~-~~~~~~~~~~g~p~ViG-TTG~ 59 (219)
.+|+|||-+..... ...-++|.++++|+|.| |.||
T Consensus 124 ~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~ 160 (531)
T 1tt5_A 124 RFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGL 160 (531)
T ss_dssp GCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 68999998865544 44557899999999987 3354
No 202
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}
Probab=52.13 E-value=43 Score=30.86 Aligned_cols=74 Identities=11% Similarity=-0.098 Sum_probs=46.1
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCCh-hhHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p-~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
.|+..+.++++++.. ...+|+||=...+ ..+.+.++.... .|..+|.++||... ...++.+...+.++.++-
T Consensus 57 ~gi~~~~s~~e~v~~---l~~aDvVil~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~-~~~~l~~~l~~~g~~~v~ 132 (497)
T 2p4q_A 57 KSIIGATSIEDFISK---LKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFP-DSNRRYEELKKKGILFVG 132 (497)
T ss_dssp SSEECCSSHHHHHHT---SCSSCEEEECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHH-HHHHHHHHHHHTTCEEEE
T ss_pred CCeEEeCCHHHHHhc---CCCCCEEEEEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChh-HHHHHHHHHHHcCCceeC
Confidence 356777889888762 1238988866655 467777765443 35667778888754 334455554445666654
Q ss_pred cc
Q 027747 81 AP 82 (219)
Q Consensus 81 sp 82 (219)
+|
T Consensus 133 ~p 134 (497)
T 2p4q_A 133 SG 134 (497)
T ss_dssp EE
T ss_pred CC
Confidence 55
No 203
>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A
Probab=51.74 E-value=8.1 Score=37.11 Aligned_cols=43 Identities=5% Similarity=0.030 Sum_probs=31.8
Q ss_pred CHHHHHhcccCCCCCcEEEECCCh-hhHHHHHHHHHHcCCcEEEecCCCC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQATAFGMRSVVYVPHIQ 60 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p-~~~~~~~~~~~~~g~p~ViGTTG~~ 60 (219)
++++.+. .+|+|||-|.- ++-...-+.|.+.++|+|.++.|++
T Consensus 425 ~l~~li~------~~DvVvdatDn~~tR~lin~~c~~~~~plI~aa~G~~ 468 (598)
T 3vh1_A 425 RLRALIK------EHDIIFLLVDSRESRWLPSLLSNIENKTVINAALGFD 468 (598)
T ss_dssp HHHHHHH------HCSEEEECCSBGGGTHHHHHHHHHTTCEEEEEEECSS
T ss_pred HHHHHHh------cCCEEEECCCCHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence 3455665 58999998754 4445556888899999999888875
No 204
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=51.73 E-value=18 Score=31.94 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=11.2
Q ss_pred HHHHHHHcCCcEEEecCCCCh
Q 027747 41 NVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 41 ~~~~~~~~g~p~ViGTTG~~~ 61 (219)
.++.+....+|+|+||.+.+-
T Consensus 84 vi~~~~~grvpViaGvg~~st 104 (344)
T 2hmc_A 84 GVERLVKAGIPVIVGTGAVNT 104 (344)
T ss_dssp HHHHHHHTTCCEEEECCCSSH
T ss_pred HHHHHhCCCCcEEEecCCCCH
Confidence 333344445666666666553
No 205
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=51.32 E-value=20 Score=31.12 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=42.9
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hh-HHHHHHHhhccCceEEE
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ET-VSALSAFCDKASMGCLI 80 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~-~~~l~~~a~~~~~~vv~ 80 (219)
++-| .+++.+-+.+...++.|.+.+.|+++.++-... +. ...++.++++.++||++
T Consensus 17 ~yAv~AfNv~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPVal 79 (286)
T 1gvf_A 17 GYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLAL 79 (286)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEE
T ss_pred CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEE
Confidence 4444 889999999999999999999999999875432 11 23456677778888886
No 206
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=51.00 E-value=20 Score=31.10 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCcEEE--ecCC----CChhhHHHHHHHhhc---cCceEEE
Q 027747 34 DASTVYDNVKQATAFGMRSVV--YVPH----IQLETVSALSAFCDK---ASMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~Vi--GTTG----~~~~~~~~l~~~a~~---~~~~vv~ 80 (219)
..+++..++++.++.|+.-++ |||| ++.++..++-+.+.+ .++|++.
T Consensus 31 D~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpVia 86 (314)
T 3d0c_A 31 DWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVA 86 (314)
T ss_dssp CHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEe
No 207
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=50.89 E-value=20 Score=31.57 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=42.8
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hhHHHHHHHhhccCceEEE
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~~~~l~~~a~~~~~~vv~ 80 (219)
.+-| .+++.+-+.+...++.|.+.+.|+++.++-+.. .-...+.+++++.++||++
T Consensus 26 ~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaL 87 (306)
T 3pm6_A 26 SFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITL 87 (306)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEE
T ss_pred CcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEE
Confidence 4554 789999999999999999999999998872211 1124456677778899887
No 208
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=50.83 E-value=36 Score=23.56 Aligned_cols=51 Identities=18% Similarity=0.136 Sum_probs=24.9
Q ss_pred ccCHHHHHhcccCCCCCc-EEEECCChh--hHHHHHHHHHHc--CCcEEEecCCCC
Q 027747 10 MSDLTMVLGSISQSKARA-VVIDFTDAS--TVYDNVKQATAF--GMRSVVYVPHIQ 60 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~D-VvIDFS~p~--~~~~~~~~~~~~--g~p~ViGTTG~~ 60 (219)
..+.++++....+...+| |++|+..|+ .-.+.++...+. .+|+|+=|...+
T Consensus 35 ~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 90 (132)
T 2rdm_A 35 VSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAA 90 (132)
T ss_dssp ESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCC
T ss_pred ECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCcc
Confidence 445555554332222467 466777664 334444444332 456665544333
No 209
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Probab=50.77 E-value=29 Score=29.58 Aligned_cols=53 Identities=6% Similarity=-0.018 Sum_probs=37.6
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH---cCCcEEEecCCCChhhH
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETV 64 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~ 64 (219)
|+.+.++..+++. .+|+||=...|..+.+.++.... .+..+|.-++|++.+++
T Consensus 71 G~~~~~~~~e~~~------~aDvVilav~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l 126 (322)
T 2izz_A 71 GVKLTPHNKETVQ------HSDVLFLAVKPHIIPFILDEIGADIEDRHIVVSCAAGVTISSI 126 (322)
T ss_dssp TCEEESCHHHHHH------HCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHH
T ss_pred CCEEeCChHHHhc------cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHH
Confidence 5566667777765 58999988889888888775543 24556666679986543
No 210
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=50.33 E-value=20 Score=30.74 Aligned_cols=47 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCcEEE--ecCC----CChhhHHHHHHHhhc---cCceEEE
Q 027747 34 DASTVYDNVKQATAFGMRSVV--YVPH----IQLETVSALSAFCDK---ASMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~Vi--GTTG----~~~~~~~~l~~~a~~---~~~~vv~ 80 (219)
..+++..++++.++.|+.-++ |||| ++.++..++-+.+.+ .++|++.
T Consensus 19 D~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 74 (297)
T 2rfg_A 19 DEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIA 74 (297)
T ss_dssp CHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEE
No 211
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=49.97 E-value=22 Score=30.39 Aligned_cols=47 Identities=2% Similarity=-0.004 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCcEEE--ecCC----CChhhHHHHHHHhhcc---CceEEE
Q 027747 34 DASTVYDNVKQATAFGMRSVV--YVPH----IQLETVSALSAFCDKA---SMGCLI 80 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~Vi--GTTG----~~~~~~~~l~~~a~~~---~~~vv~ 80 (219)
..+.+..++++.++.|+.=++ |||| ++.++..++-+.+.+. ++|++.
T Consensus 21 D~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvia 76 (292)
T 3daq_A 21 NLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIA 76 (292)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEE
No 212
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=49.73 E-value=38 Score=24.45 Aligned_cols=74 Identities=9% Similarity=0.096 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhcCCeEEEecCCCCCC
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVESRPNARD 116 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~~dieIiE~Hh~K~D 116 (219)
-+.+.+..|.+.|. +|.|+ . +-...|+. .+--=|++|.|-|- +...++...+. .+++.+++.
T Consensus 9 ~i~~~L~la~kagk-lv~G~---~-~v~kai~~---gkaklViiA~D~~~--~~~~~i~~~c~--~~~ip~~~~------ 70 (104)
T 4a18_G 9 NIQSKLALVMRSGK-ATLGY---K-STIKAIRN---GTAKLVFISNNCPT--VRKSEIEYYAS--LAQISIHHF------ 70 (104)
T ss_dssp HHHHHHHHHHHHSE-EEESH---H-HHHHHHHH---TCCCEEEECTTSCH--HHHHHHHHHHH--HHTCEEEEC------
T ss_pred HHHHHHHHHHHhCC-EeECH---H-HHHHHHHc---CCceEEEEeCCCCH--HHHHHHHHHHH--HcCCcEEEe------
Confidence 45566677777763 55542 1 12223322 12234666777763 22233322221 135666542
Q ss_pred CCcHHHHHHHHHHH
Q 027747 117 FPSPDATQIANNLS 130 (219)
Q Consensus 117 aPSGTA~~la~~i~ 130 (219)
.+|...|+.++.
T Consensus 71 --~~s~~eLG~a~G 82 (104)
T 4a18_G 71 --VGSNVELGTACG 82 (104)
T ss_dssp --SSCHHHHHHHTT
T ss_pred --cCCHHHHHHHhC
Confidence 245666666653
No 213
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=49.11 E-value=72 Score=26.07 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=20.6
Q ss_pred CCcEEEEC-CChhhHHHHHHHHHHcCCcEEEec
Q 027747 25 ARAVVIDF-TDASTVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 25 ~~DVvIDF-S~p~~~~~~~~~~~~~g~p~ViGT 56 (219)
.+|.+|=+ ..++.+.+.++.+.+.|+|+|.--
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (313)
T 2h3h_A 57 GVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLD 89 (313)
T ss_dssp TCSEEEECCSSTTTTHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeC
Confidence 68865533 334444566777778889988643
No 214
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=48.93 E-value=86 Score=26.04 Aligned_cols=84 Identities=12% Similarity=0.168 Sum_probs=50.3
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCcEEEec--------------------CCCC-----hhhHHHHHHHh-hccCce
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYV--------------------PHIQ-----LETVSALSAFC-DKASMG 77 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT--------------------TG~~-----~~~~~~l~~~a-~~~~~~ 77 (219)
.++|+||=...|.+ .... .....+|+|.+. ||.+ .++++.+.++- ..+++.
T Consensus 68 ~~~DlIiai~t~aa-~a~~--~~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~~~~~~~~~l~l~~~l~P~~k~vg 144 (302)
T 3lkv_A 68 ENPDVLVGIATPTA-QALV--SATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLSDLSPVEQHVELIKEILPNVKSIG 144 (302)
T ss_dssp TCCSEEEEESHHHH-HHHH--HHCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEECCCCHHHHHHHHHHHSTTCCEEE
T ss_pred cCCcEEEEcCCHHH-HHHH--hhcCCCCeEEEecCCcchhhhcccccCCCCcEEEEECCcCHHHHHHHHHHhCCCCCEEE
Confidence 47999987666643 2222 234678888642 2221 24567777764 446788
Q ss_pred EEEccChhHHHHHHHHHHHHHhhhcCCeEEEecCC
Q 027747 78 CLIAPTLSIGSILLQQAAISASFHYKNVEIVESRP 112 (219)
Q Consensus 78 vv~spNfSlGv~ll~~~~~~aa~~~~dieIiE~Hh 112 (219)
+++.+...=.... .+.++.+++. ++++++|..-
T Consensus 145 vi~~~~~~~s~~~-~~~~~~~~~~-~g~~~v~~~~ 177 (302)
T 3lkv_A 145 VVYNPGEANAVSL-MELLKLSAAK-HGIKLVEATA 177 (302)
T ss_dssp EEECTTCHHHHHH-HHHHHHHHHH-TTCEEEEEEC
T ss_pred EEeCCCcccHHHH-HHHHHHHHHH-cCCEEEEEec
Confidence 9998876544443 3445554443 5778887643
No 215
>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A
Probab=48.90 E-value=17 Score=31.98 Aligned_cols=32 Identities=6% Similarity=-0.199 Sum_probs=23.9
Q ss_pred CCcEEEECCCh-h-hHHHHHHHHHHcCCcEEEec
Q 027747 25 ARAVVIDFTDA-S-TVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 25 ~~DVvIDFS~p-~-~~~~~~~~~~~~g~p~ViGT 56 (219)
.+|+|||-+.- + .-...-+.|.+.|+|+|.|.
T Consensus 208 ~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~ 241 (353)
T 3h5n_A 208 EADIWVVSADHPFNLINWVNKYCVRANQPYINAG 241 (353)
T ss_dssp CCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEE
Confidence 69999997743 3 34445588999999999763
No 216
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=48.83 E-value=32 Score=29.89 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=41.8
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCC------ChhhH-HHHHHHhh--ccCceEEE
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHI------QLETV-SALSAFCD--KASMGCLI 80 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~------~~~~~-~~l~~~a~--~~~~~vv~ 80 (219)
++-| .+++.+-+.+...++.|.+.+.|+++.++-. ..+.+ ..++.+++ +.++||++
T Consensus 20 ~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPVal 85 (288)
T 3q94_A 20 KYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAI 85 (288)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEE
T ss_pred CcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEE
Confidence 4444 7899999999999999999999999987621 11222 33456777 78899987
No 217
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=48.51 E-value=49 Score=27.69 Aligned_cols=74 Identities=7% Similarity=0.113 Sum_probs=44.0
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhh--ccCceEEEccChhHHHHHHHHHHHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCD--KASMGCLIAPTLSIGSILLQQAAISA 98 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~--~~~~~vv~spNfSlGv~ll~~~~~~a 98 (219)
.+|.+|=........+.++.+.+.|+|+|.--+.........+...-. ...++.|..-|+..|-.+...+++..
T Consensus 62 ~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g 137 (350)
T 3h75_A 62 KPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKL 137 (350)
T ss_dssp CCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHh
Confidence 688666454445667788888899999988665554432111111000 01267777778887777766666665
No 218
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=48.37 E-value=36 Score=27.39 Aligned_cols=74 Identities=14% Similarity=0.095 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCC--ChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhcCCeEE-EecC
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEI-VESR 111 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~--~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~~dieI-iE~H 111 (219)
++...+..+.+.++|+.++..+..+ +.+.+.+.-++|.+-+.+.|..+- |.-.+.++++.+.+ +++.+ +|-|
T Consensus 62 ~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~---~~~~~~~l~~~a~~--~gv~l~~En~ 136 (262)
T 3p6l_A 62 AQTQKEIKELAASKGIKIVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEP---ALSDWDLVEKLSKQ--YNIKISVHNH 136 (262)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECC---CGGGHHHHHHHHHH--HTCEEEEECC
T ss_pred HHHHHHHHHHHHHcCCeEEEEeccCCccHHHHHHHHHHHHHcCCCEEEecC---CHHHHHHHHHHHHH--hCCEEEEEeC
Confidence 5567777788888999888776654 334555555666667777666542 22334556655554 35654 7777
Q ss_pred CC
Q 027747 112 PN 113 (219)
Q Consensus 112 h~ 113 (219)
..
T Consensus 137 ~~ 138 (262)
T 3p6l_A 137 PQ 138 (262)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 219
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=48.26 E-value=26 Score=28.29 Aligned_cols=94 Identities=9% Similarity=0.068 Sum_probs=54.6
Q ss_pred CHHHHHhcccCCCCCcEEEECC--------ChhhHHHHHHHHHHcCCcEEEecCCC--ChhhHHHHHHHhhccCceEEEc
Q 027747 12 DLTMVLGSISQSKARAVVIDFT--------DASTVYDNVKQATAFGMRSVVYVPHI--QLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS--------~p~~~~~~~~~~~~~g~p~ViGTTG~--~~~~~~~l~~~a~~~~~~vv~s 81 (219)
++++.++.+.+ ..+|. |++. .++.+.+..+.+.++|+.++.....+ +.+.+++.-++|.+-+.+.|..
T Consensus 31 ~~~~~l~~~~~-~G~~~-vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~ 108 (257)
T 3lmz_A 31 DLDTTLKTLER-LDIHY-LCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIVG 108 (257)
T ss_dssp CHHHHHHHHHH-TTCCE-EEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHH-hCCCE-EEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEEe
Confidence 56666655332 24662 3332 24556777788888999888665543 2344445445566667766654
Q ss_pred cChhHHHHHHHHHHHHHhhhcCCeEE-EecCC
Q 027747 82 PTLSIGSILLQQAAISASFHYKNVEI-VESRP 112 (219)
Q Consensus 82 pNfSlGv~ll~~~~~~aa~~~~dieI-iE~Hh 112 (219)
. -|...+.++++.+.+ +++.+ +|-|.
T Consensus 109 ~---p~~~~l~~l~~~a~~--~gv~l~lEn~~ 135 (257)
T 3lmz_A 109 V---PNYELLPYVDKKVKE--YDFHYAIHLHG 135 (257)
T ss_dssp E---ECGGGHHHHHHHHHH--HTCEEEEECCC
T ss_pred c---CCHHHHHHHHHHHHH--cCCEEEEecCC
Confidence 2 134455666666654 36664 67774
No 220
>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}
Probab=48.22 E-value=27 Score=28.37 Aligned_cols=54 Identities=9% Similarity=0.025 Sum_probs=37.4
Q ss_pred CccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH---cCCcEEEecCCCChhhH
Q 027747 5 LEIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETV 64 (219)
Q Consensus 5 ~~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~ 64 (219)
+|+.++++.++++. .+|+||=.+.|..+.+.++.... .+.-+|.-+.|.+.+.+
T Consensus 49 ~g~~~~~~~~e~~~------~aDvVilav~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l 105 (247)
T 3gt0_A 49 YGLTTTTDNNEVAK------NADILILSIKPDLYASIINEIKEIIKNDAIIVTIAAGKSIEST 105 (247)
T ss_dssp HCCEECSCHHHHHH------HCSEEEECSCTTTHHHHC---CCSSCTTCEEEECSCCSCHHHH
T ss_pred hCCEEeCChHHHHH------hCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHH
Confidence 36667788888876 58999999988888887765443 34456667888987543
No 221
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=48.01 E-value=53 Score=25.83 Aligned_cols=31 Identities=23% Similarity=0.228 Sum_probs=19.4
Q ss_pred CCcE-EEE-CCChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAV-VID-FTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DV-vID-FS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|. +|- +...+.+.+.++.+.++|+++++.
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~ 109 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVD 109 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEE
Confidence 5773 332 222255677778888888887765
No 222
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=47.97 E-value=40 Score=28.26 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=27.3
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhh
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLET 63 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~ 63 (219)
+.+.++++ .+|.++ +|....+.+++|.+.|+|++-|.. ++.+
T Consensus 98 ~a~~Ai~A-----GA~fIv---sP~~~~~vi~~~~~~gi~~ipGv~--TptE 139 (232)
T 4e38_A 98 QALAAKEA-----GATFVV---SPGFNPNTVRACQEIGIDIVPGVN--NPST 139 (232)
T ss_dssp HHHHHHHH-----TCSEEE---CSSCCHHHHHHHHHHTCEEECEEC--SHHH
T ss_pred HHHHHHHc-----CCCEEE---eCCCCHHHHHHHHHcCCCEEcCCC--CHHH
Confidence 44455553 577665 466667777777778888877765 5544
No 223
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=47.93 E-value=81 Score=28.69 Aligned_cols=77 Identities=10% Similarity=0.077 Sum_probs=47.3
Q ss_pred cccccCHHHHHhcccCCCCCcEEEEC-CChh----------hHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhh
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDF-TDAS----------TVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCD 72 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDF-S~p~----------~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~ 72 (219)
+..++|+++++. .+|++|=. ..|. .+.+.++...+ .|.-+|. .|+..+..-+++.+..+
T Consensus 72 l~~ttd~~ea~~------~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~-~STv~pgtt~~l~~~l~ 144 (446)
T 4a7p_A 72 LSFTTDLAEGVK------DADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVT-KSTVPVGTGDEVERIIA 144 (446)
T ss_dssp EEEESCHHHHHT------TCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEE-CSCCCTTHHHHHHHHHH
T ss_pred EEEECCHHHHHh------cCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEE-eCCCCchHHHHHHHHHH
Confidence 566788888875 68976644 2342 35555554443 4444554 55576665556655543
Q ss_pred c----cCceEEEccChhHHHHH
Q 027747 73 K----ASMGCLIAPTLSIGSIL 90 (219)
Q Consensus 73 ~----~~~~vv~spNfSlGv~l 90 (219)
+ ...+++.+|+|.--..+
T Consensus 145 e~~~~~d~~v~~~Pe~a~eG~a 166 (446)
T 4a7p_A 145 EVAPNSGAKVVSNPEFLREGAA 166 (446)
T ss_dssp HHSTTSCCEEEECCCCCCTTSH
T ss_pred HhCCCCCceEEeCcccccccch
Confidence 3 35899999998755444
No 224
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=47.84 E-value=66 Score=25.69 Aligned_cols=32 Identities=13% Similarity=-0.071 Sum_probs=19.3
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
..+|.+|=+.... .+.++.+.+.|+|+|.--.
T Consensus 62 ~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 62 RGFDGLILQSFSN--PQTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp TTCSEEEEESSCC--HHHHHHHHTTSSCEEEESC
T ss_pred CCCCEEEEecCCc--HHHHHHHHHCCCCEEEEec
Confidence 3577555443333 6667777778888776433
No 225
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=47.78 E-value=9.4 Score=32.95 Aligned_cols=33 Identities=9% Similarity=0.015 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHH
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSAL 67 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l 67 (219)
.+++..++++.++.|+. +|.|||| ++.++..++
T Consensus 24 ~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v 62 (300)
T 3eb2_A 24 ADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAV 62 (300)
T ss_dssp HHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHH
Confidence 45666777777777764 3467777 566555444
No 226
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=47.74 E-value=49 Score=23.54 Aligned_cols=13 Identities=0% Similarity=0.140 Sum_probs=5.2
Q ss_pred HHHHHHhhccCce
Q 027747 65 SALSAFCDKASMG 77 (219)
Q Consensus 65 ~~l~~~a~~~~~~ 77 (219)
..|..+|+++++|
T Consensus 47 ~~i~~~c~~~~ip 59 (99)
T 3j21_Z 47 DDIYYYAKLSDIP 59 (99)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCC
Confidence 3333333334444
No 227
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=47.63 E-value=21 Score=31.87 Aligned_cols=78 Identities=9% Similarity=0.107 Sum_probs=44.0
Q ss_pred EEEE--CCChhhHHHHHHHHHHcCCcEEE--ecCCCCh--hh--HHHHHHHhhcc-CceEEEccChhHHHHHHHHHHHHH
Q 027747 28 VVID--FTDASTVYDNVKQATAFGMRSVV--YVPHIQL--ET--VSALSAFCDKA-SMGCLIAPTLSIGSILLQQAAISA 98 (219)
Q Consensus 28 VvID--FS~p~~~~~~~~~~~~~g~p~Vi--GTTG~~~--~~--~~~l~~~a~~~-~~~vv~spNfSlGv~ll~~~~~~a 98 (219)
|++- .+..+-+...++++.+.|.++++ ||++|.. ++ +..|..+.+.. +.||.+ |-=+.|..+-..++ |
T Consensus 151 viLstGmat~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~-sdHt~G~~~~~AAv--A 227 (349)
T 2wqp_A 151 IILSTGMNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGL-SDHTLDNYACLGAV--A 227 (349)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEE-ECCSSSSHHHHHHH--H
T ss_pred EEEECCCCCHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEe-CCCCCcHHHHHHHH--H
Confidence 5554 23445556667777777767777 7888732 22 34455554445 688877 45556633222211 1
Q ss_pred hhhcCCeEEEecCC
Q 027747 99 SFHYKNVEIVESRP 112 (219)
Q Consensus 99 a~~~~dieIiE~Hh 112 (219)
. ...|||.|.
T Consensus 228 l----GA~iIEkH~ 237 (349)
T 2wqp_A 228 L----GGSILERHF 237 (349)
T ss_dssp H----TCCEEEEEB
T ss_pred h----CCCEEEeCC
Confidence 1 233999996
No 228
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=46.68 E-value=96 Score=25.55 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=22.6
Q ss_pred CCCcEEEECC-ChhhHHHHHHHHHHcCCcEEEecC
Q 027747 24 KARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 24 ~~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
..+|.+|=+. .++...+.++.+.+.|+|+|.--+
T Consensus 61 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 95 (325)
T 2x7x_A 61 EGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDR 95 (325)
T ss_dssp TTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESS
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 3689666443 344445677888889999886443
No 229
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=45.95 E-value=19 Score=31.06 Aligned_cols=50 Identities=4% Similarity=0.090 Sum_probs=38.1
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
=+-||=++|+++...+ +.|.++|=-.||+..+ .+-.++.+++.|+++.++
T Consensus 92 piSIDT~~~~va~aAl----~aGa~iINdvsg~~d~---~~~~~~a~~~~~vVlmh~ 141 (282)
T 1aj0_A 92 WISVDTSKPEVIRESA----KVGAHIINDIRSLSEP---GALEAAAETGLPVCLMHM 141 (282)
T ss_dssp EEEEECCCHHHHHHHH----HTTCCEEEETTTTCST---THHHHHHHHTCCEEEECC
T ss_pred eEEEeCCCHHHHHHHH----HcCCCEEEECCCCCCH---HHHHHHHHhCCeEEEEcc
Confidence 3799999998865544 5599999999987443 445566678899999876
No 230
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=45.63 E-value=71 Score=21.96 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=35.9
Q ss_pred cccccCHHHHHhcccCC------CCCc-EEEECCChh-hHHHHHHHHHH----cCCcEEEecCCCChhh
Q 027747 7 IPVMSDLTMVLGSISQS------KARA-VVIDFTDAS-TVYDNVKQATA----FGMRSVVYVPHIQLET 63 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~------~~~D-VvIDFS~p~-~~~~~~~~~~~----~g~p~ViGTTG~~~~~ 63 (219)
+....+.++++....+. ..+| |++|+..|+ .-.+.++...+ ..+|+|+=|+..+.+.
T Consensus 31 v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~ 99 (140)
T 1k68_A 31 VVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINEDD 99 (140)
T ss_dssp EEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCHHH
T ss_pred EEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcHHH
Confidence 44566777777654331 4689 578998875 23455555555 3578887776665543
No 231
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=44.88 E-value=39 Score=30.25 Aligned_cols=51 Identities=10% Similarity=0.142 Sum_probs=38.6
Q ss_pred ccccccCHHHHHhcccCCCCCcE-EEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 6 EIPVMSDLTMVLGSISQSKARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
||.--+++.++|+.. ....+-| .+++.+-+.+...++.|.+.+.|+++.++
T Consensus 10 ~v~~~~~~~~ll~~A-~~~~yAVpAfNv~n~e~~~Avl~AAee~~sPvIlq~s 61 (358)
T 1dos_A 10 GVITGDDVQKVFQVA-KENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFS 61 (358)
T ss_dssp EECCTHHHHHHHHHH-HHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred ceecchHHHHHHHHH-HHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 444445677777642 2234555 89999999999999999999999999876
No 232
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=44.75 E-value=34 Score=29.79 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=40.4
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.=+-||=++|+++...++ .|.++|=-.+|+.. +.+-.++.+++.|+++-++-
T Consensus 104 vpiSIDT~~~~Va~aAl~----aGa~iINdVsg~~d---~~m~~v~a~~~~~vVlmh~~ 155 (294)
T 2dqw_A 104 VPVSVDTRKPEVAEEALK----LGAHLLNDVTGLRD---ERMVALAARHGVAAVVMHMP 155 (294)
T ss_dssp SCEEEECSCHHHHHHHHH----HTCSEEECSSCSCC---HHHHHHHHHHTCEEEEECCS
T ss_pred CeEEEECCCHHHHHHHHH----hCCCEEEECCCCCC---hHHHHHHHHhCCCEEEEcCC
Confidence 338999999998766655 49999999999843 35566677789999998763
No 233
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=44.41 E-value=21 Score=32.31 Aligned_cols=67 Identities=7% Similarity=-0.091 Sum_probs=43.5
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHH
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 94 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~ 94 (219)
.|+||+-+.-..-......|+++|+.++.-.=...-..=+.|.++++++++.+ .|=.|-=..+++.+
T Consensus 94 iDvVV~ai~G~aGl~ptlaAi~aGK~VvlANKE~lv~~G~~l~~~A~~~gv~l--iPVDseh~Ai~q~L 160 (388)
T 1r0k_A 94 ADWTMAAIIGCAGLKATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTL--LPVDSEHNAIFQCF 160 (388)
T ss_dssp CSEEEECCCSGGGHHHHHHHHHTTSEEEECCSHHHHTTHHHHHHHHHHHTCEE--EECSHHHHHHHHHC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHCCCEEEEeCcHHHHhhHHHHHHHHHHcCCEE--EEechhHHHHHHHh
Confidence 89999999555556777889999999998632211222346777887776655 34455444444433
No 234
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=44.16 E-value=39 Score=26.91 Aligned_cols=53 Identities=15% Similarity=0.006 Sum_probs=34.8
Q ss_pred CCcEEEECCChhhHHHHHHHH---HHcCCcEEEecCCCC-hh---------h--HHHHHHHhhccCceEEE
Q 027747 25 ARAVVIDFTDASTVYDNVKQA---TAFGMRSVVYVPHIQ-LE---------T--VSALSAFCDKASMGCLI 80 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~---~~~g~p~ViGTTG~~-~~---------~--~~~l~~~a~~~~~~vv~ 80 (219)
.+|+||-...+..+.+.++.. ++ +..+|..++|++ .+ . .+.+++.. .+.+++-
T Consensus 57 ~aD~vi~av~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l--~~~~vv~ 124 (209)
T 2raf_A 57 LGEIVIMAVPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQL--PDSQVLK 124 (209)
T ss_dssp CCSEEEECSCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHC--TTSEEEE
T ss_pred cCCEEEEcCCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHC--CCCcEEE
Confidence 689999887777776666543 34 777888889987 21 1 35566655 3456666
No 235
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=44.06 E-value=32 Score=27.60 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=8.7
Q ss_pred hhHHHHHHHHHHcCCcEE
Q 027747 36 STVYDNVKQATAFGMRSV 53 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~V 53 (219)
....+..+.+.++|+.+.
T Consensus 45 ~~~~~~~~~l~~~gl~~~ 62 (275)
T 3qc0_A 45 IGLGEAGRIVRANGLKLT 62 (275)
T ss_dssp HCHHHHHHHHHHHTCEES
T ss_pred cCHHHHHHHHHHcCCceE
Confidence 334444455555555543
No 236
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=44.00 E-value=52 Score=26.36 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHHcCCcEEEecC--CC---Chhh---HHHHHHHhhccCceEEE-ccCh------hHH-HHHHHHHHHHHh
Q 027747 36 STVYDNVKQATAFGMRSVVYVP--HI---QLET---VSALSAFCDKASMGCLI-APTL------SIG-SILLQQAAISAS 99 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTT--G~---~~~~---~~~l~~~a~~~~~~vv~-spNf------SlG-v~ll~~~~~~aa 99 (219)
....+.-+.+.++|+.++.-.+ .+ +++. ..+.-++|.+-+.+.|. .|.+ ..- +..|.++++.+.
T Consensus 51 ~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~ 130 (272)
T 2q02_A 51 LNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFA 130 (272)
T ss_dssp CCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 4566677778888988844322 22 2333 33333445566676664 2322 222 445555555555
Q ss_pred hhcCCeEE-EecCC
Q 027747 100 FHYKNVEI-VESRP 112 (219)
Q Consensus 100 ~~~~dieI-iE~Hh 112 (219)
+ +++.+ +|-|.
T Consensus 131 ~--~gv~l~~E~~~ 142 (272)
T 2q02_A 131 R--YDIQGLVEPLG 142 (272)
T ss_dssp T--TTCEEEECCCC
T ss_pred H--cCCEEEEEecC
Confidence 4 56765 67774
No 237
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=43.95 E-value=29 Score=31.00 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=29.5
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+-| .+++.+-+.+...++.|.+.+.|+++.++
T Consensus 20 ~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s 53 (349)
T 3elf_A 20 SYAFPAINCTSSETVNAAIKGFADAGSDGIIQFS 53 (349)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcC
Confidence 4554 78999999999999999999999999877
No 238
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=43.83 E-value=30 Score=29.82 Aligned_cols=51 Identities=20% Similarity=0.143 Sum_probs=38.5
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
=+-||=+.|+++.. |++.|.++|=-.||+..+ +.+-.++.+++.|+|+-++
T Consensus 82 piSIDT~~~~va~a----Al~aGa~iINdvsg~~~d--~~m~~~~a~~~~~vVlmh~ 132 (280)
T 1eye_A 82 TVSIDTMRADVARA----ALQNGAQMVNDVSGGRAD--PAMGPLLAEADVPWVLMHW 132 (280)
T ss_dssp CEEEECSCHHHHHH----HHHTTCCEEEETTTTSSC--TTHHHHHHHHTCCEEEECC
T ss_pred EEEEeCCCHHHHHH----HHHcCCCEEEECCCCCCC--HHHHHHHHHhCCeEEEEcC
Confidence 38999999987655 455699999999998632 2455566678899999775
No 239
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=43.75 E-value=1e+02 Score=23.12 Aligned_cols=67 Identities=7% Similarity=0.044 Sum_probs=36.3
Q ss_pred CCc---EEEECCChhhHHHHHHHH---HH------cCCcEEEecCCCChhh------HHHHHHHhhccCceEEEccChh-
Q 027747 25 ARA---VVIDFTDASTVYDNVKQA---TA------FGMRSVVYVPHIQLET------VSALSAFCDKASMGCLIAPTLS- 85 (219)
Q Consensus 25 ~~D---VvIDFS~p~~~~~~~~~~---~~------~g~p~ViGTTG~~~~~------~~~l~~~a~~~~~~vv~spNfS- 85 (219)
.+| +|+|.+.++.......+. .+ .++|+|+--|=.+... .+.+++++++.+.+++..+...
T Consensus 96 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 175 (208)
T 2yc2_C 96 GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP 175 (208)
T ss_dssp CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC---
T ss_pred hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCC
Confidence 467 477999987655443332 22 4778766555454322 3567777777778877665554
Q ss_pred -HHHHHH
Q 027747 86 -IGSILL 91 (219)
Q Consensus 86 -lGv~ll 91 (219)
.|+.-+
T Consensus 176 ~~gi~~l 182 (208)
T 2yc2_C 176 GKDADAP 182 (208)
T ss_dssp ----CHH
T ss_pred CcCHHHH
Confidence 565443
No 240
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=43.61 E-value=33 Score=23.78 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=23.2
Q ss_pred HHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 42 VKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 42 ~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++...+....+|+=..--+++-...+..+|+++++|+++.++
T Consensus 20 ~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~s 61 (82)
T 3v7e_A 20 VKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVES 61 (82)
T ss_dssp HHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESC
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 333333445555555555555555666666666666666553
No 241
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Probab=43.34 E-value=27 Score=33.72 Aligned_cols=35 Identities=9% Similarity=-0.039 Sum_probs=26.7
Q ss_pred CCcEEEECCC-hhhHHHHHHHHHHcCCcEEE-ecCCC
Q 027747 25 ARAVVIDFTD-ASTVYDNVKQATAFGMRSVV-YVPHI 59 (219)
Q Consensus 25 ~~DVvIDFS~-p~~~~~~~~~~~~~g~p~Vi-GTTG~ 59 (219)
.+|+|||-+. +++-...-+.|.++++|+|. ||.|+
T Consensus 108 ~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~G~ 144 (640)
T 1y8q_B 108 QFILVMNALDNRAARNHVNRMCLAADVPLIESGTAGY 144 (640)
T ss_dssp TCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecc
Confidence 6999999864 45555566889999999996 45565
No 242
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=42.97 E-value=1.1e+02 Score=25.70 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=33.1
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcE---EEecCCCChhhHHHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRS---VVYVPHIQLETVSALS 68 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~---ViGTTG~~~~~~~~l~ 68 (219)
++|+|+=+..+......++.+.+.|+.. ++++.++...++..+.
T Consensus 197 ~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (379)
T 3n0w_A 197 GAQLIVSTSGGAANINIMKQAREFGLPSKTQKVGGMIDILTDVKSAG 243 (379)
T ss_dssp TCSEEEECCCHHHHHHHHHHHHHTTCSCSSCEEECCBCCHHHHHHHC
T ss_pred CCCEEEEecccchHHHHHHHHHHcCCCCCCcEEEecccchHHHHhhC
Confidence 6999988888777778899999998753 6777776665555553
No 243
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=42.92 E-value=97 Score=24.87 Aligned_cols=32 Identities=16% Similarity=0.105 Sum_probs=21.1
Q ss_pred CCcEEEEC-CChhhHHHHHHHHHHcCCcEEEec
Q 027747 25 ARAVVIDF-TDASTVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 25 ~~DVvIDF-S~p~~~~~~~~~~~~~g~p~ViGT 56 (219)
.+|.+|=. +.++.....++.+.+.|+|+|.--
T Consensus 61 ~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~ 93 (303)
T 3d02_A 61 KVDAITIVPNDANVLEPVFKKARDAGIVVLTNE 93 (303)
T ss_dssp TCSEEEECCSCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCEEEEecCChHHHHHHHHHHHHCCCeEEEEe
Confidence 68865533 344445566778888899987643
No 244
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=42.84 E-value=75 Score=23.66 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=43.6
Q ss_pred EEEECCChhhHHHHHHHHHHcCC-cEEEec-CCCChhhHHHHHHHhhccCceEEE
Q 027747 28 VVIDFTDASTVYDNVKQATAFGM-RSVVYV-PHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~-p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
++|.-..+......++.|++.|- ..|++- ..++..+..+|.-+|++.+...++
T Consensus 61 l~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RRLqlAA~~g~~~~~l 115 (119)
T 1ofu_X 61 LLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQSLN 115 (119)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHHHHHHHHhCCCeEEE
Confidence 68888899999999999999865 899995 568888889999888876666553
No 245
>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6
Probab=42.82 E-value=29 Score=29.11 Aligned_cols=73 Identities=11% Similarity=0.061 Sum_probs=43.7
Q ss_pred cccc--CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH--cCCcEEEecCCC---ChhhHHHHHHHhhcc-----C
Q 027747 8 PVMS--DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA--FGMRSVVYVPHI---QLETVSALSAFCDKA-----S 75 (219)
Q Consensus 8 ~v~~--~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~--~g~p~ViGTTG~---~~~~~~~l~~~a~~~-----~ 75 (219)
.+.+ ++++++. .+|+||=...+..+.+.++.... .+..+|.-+.|+ .++..+.+.+...+. .
T Consensus 58 ~~~~~~~~~~~~~------~~D~vi~~v~~~~~~~v~~~i~~l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~ 131 (335)
T 1txg_A 58 EIFWPEQLEKCLE------NAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRER 131 (335)
T ss_dssp EEECGGGHHHHHT------TCSEEEECSCGGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGG
T ss_pred EEecHHhHHHHHh------cCCEEEEcCChHHHHHHHHHHhcCCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCc
Confidence 3455 6767664 69999988888877777765432 344455555588 432223444443221 2
Q ss_pred ceEEEccChhH
Q 027747 76 MGCLIAPTLSI 86 (219)
Q Consensus 76 ~~vv~spNfSl 86 (219)
.++...||+..
T Consensus 132 ~~~~~~p~~~~ 142 (335)
T 1txg_A 132 TVAITGPAIAR 142 (335)
T ss_dssp EEEEESSCCHH
T ss_pred EEEEECCCcHH
Confidence 46677888754
No 246
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=42.79 E-value=32 Score=28.81 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=29.1
Q ss_pred HHHHHHHcCCcEEE--ecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 41 NVKQATAFGMRSVV--YVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 41 ~~~~~~~~g~p~Vi--GTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.++..++.|...|+ ||+|.+.++...+-+..++.++|+++=|-.
T Consensus 23 ~~~~~~~~GtD~i~vGGs~gvt~~~~~~~v~~ik~~~~Pvvlfp~~ 68 (228)
T 3vzx_A 23 QLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPCVLEVSA 68 (228)
T ss_dssp HHHHHHTSSCSEEEECCCSCCCHHHHHHHHHHHTTSSSCEEEECSC
T ss_pred HHHHHHHcCCCEEEECCcCCCCHHHHHHHHHHhhccCCCEEEeCCC
Confidence 34445677776654 788888877666655555578888775544
No 247
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=42.75 E-value=30 Score=30.44 Aligned_cols=47 Identities=17% Similarity=0.215 Sum_probs=31.9
Q ss_pred CChhhHHHHHHHHHHcCCcEEEecCCCChhh----HHHHHHHhhccCceEE
Q 027747 33 TDASTVYDNVKQATAFGMRSVVYVPHIQLET----VSALSAFCDKASMGCL 79 (219)
Q Consensus 33 S~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~----~~~l~~~a~~~~~~vv 79 (219)
++++.+.+.++.+.++|+|+++|=.|..... .+.+-++.++++++++
T Consensus 219 ~~~~~~~~~~~~~~~~g~Pv~igEfG~~~~~~~~~~~~~l~~~~~~~i~w~ 269 (345)
T 3jug_A 219 GDANTVRSNIDRVIDQDLALVIGEFGHRHTDGDVDEDTILSYSEETGTGWL 269 (345)
T ss_dssp SSHHHHHHHHHHHHTTTCCEEEEEECCCCCC--CCHHHHHHHHHHHTCEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEECcCCCCCCCCHHHHHHHHHHHHcCCEEE
Confidence 4677888999999999999999988876521 2344444444444443
No 248
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=42.50 E-value=1e+02 Score=24.62 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=20.4
Q ss_pred CCCcEEEECC-ChhhHHHHHHHHHHcCCcEEEe
Q 027747 24 KARAVVIDFT-DASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 24 ~~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViG 55 (219)
..+|.+|=++ .++...+.++.+.+.|+|+|.-
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 88 (283)
T 2ioy_A 56 QKVDVLLINPVDSDAVVTAIKEANSKNIPVITI 88 (283)
T ss_dssp TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEe
Confidence 3688655443 3344445677788889998764
No 249
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=42.33 E-value=37 Score=29.87 Aligned_cols=49 Identities=14% Similarity=0.003 Sum_probs=39.6
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+-||=++|+++...++ .|..+|=-.+|+.++ .+-.++.+++.|+++-++
T Consensus 120 ISIDT~~~~VaeaAl~----aGa~iINDVsg~~d~---~m~~vaa~~g~~vVlmh~ 168 (318)
T 2vp8_A 120 ISVDTWRAQVAKAACA----AGADLINDTWGGVDP---AMPEVAAEFGAGLVCAHT 168 (318)
T ss_dssp EEEECSCHHHHHHHHH----HTCCEEEETTSSSST---THHHHHHHHTCEEEEECC
T ss_pred EEEeCCCHHHHHHHHH----hCCCEEEECCCCCch---HHHHHHHHhCCCEEEECC
Confidence 7899999998766555 499999999999743 456666778999999886
No 250
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=42.02 E-value=30 Score=29.19 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=39.4
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHH
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 88 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv 88 (219)
.++++++. .+|+||..+.+..+.+..-..++.+.-+|--..|-..-+ + +.+++.++.++..||++-++
T Consensus 207 ~~l~~~l~------~aDvVi~~~p~~~i~~~~~~~mk~g~~lin~a~g~~~~~---~-~~a~~~G~~~i~~pg~~g~v 274 (300)
T 2rir_A 207 DELKEHVK------DIDICINTIPSMILNQTVLSSMTPKTLILDLASRPGGTD---F-KYAEKQGIKALLAPGLPGIV 274 (300)
T ss_dssp GGHHHHST------TCSEEEECCSSCCBCHHHHTTSCTTCEEEECSSTTCSBC---H-HHHHHHTCEEEECCCHHHHH
T ss_pred hhHHHHhh------CCCEEEECCChhhhCHHHHHhCCCCCEEEEEeCCCCCcC---H-HHHHHCCCEEEECCCCCCcH
Confidence 46777764 699999988765443222222233433333333322212 3 34555788888999998877
No 251
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=41.80 E-value=21 Score=31.33 Aligned_cols=92 Identities=10% Similarity=-0.103 Sum_probs=59.3
Q ss_pred HHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHH--HHHHHHHHHHHhhhc-CCeEEEecCCC--
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG--SILLQQAAISASFHY-KNVEIVESRPN-- 113 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlG--v~ll~~~~~~aa~~~-~dieIiE~Hh~-- 113 (219)
.+.++.+...++|.||=|.|..+.+ .+.++|+++++|++.++--+-- ..|...+...++..+ .....++.+-.
T Consensus 73 ~~~~~~l~~~~iP~IIvtrg~~pp~--elie~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~la~~~~~H~~~v~~~g~gv 150 (312)
T 1knx_A 73 QQILHNLLKLNPPAIILTKSFTDPT--VLLQVNQTYQVPILKTDFFSTELSFTVETYINEQFATVAQIHGVLLEVFGVGV 150 (312)
T ss_dssp TTTHHHHHTTCCSCEEEETTTCCCH--HHHHHGGGTCCCEEEESSCGGGGTTTHHHHHHHHTCCCEEEEEEEEEETTEEE
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCH--HHHHHHHHcCCEEEEeCccHHHHHHHHHHHHHHHhhhcceeEEEEEEECCEEE
Confidence 4567778899999999999998764 7888899999999987643222 222233344444432 34455666543
Q ss_pred CCCCCcHHHHH-HHHHHHhc
Q 027747 114 ARDFPSPDATQ-IANNLSNL 132 (219)
Q Consensus 114 K~DaPSGTA~~-la~~i~~~ 132 (219)
=.-.|||+-+. +|-.+.+.
T Consensus 151 li~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 151 LLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp EEEESSSSSHHHHHHHHHTT
T ss_pred EEEcCCCCCHHHHHHHHHHc
Confidence 34467877773 55555543
No 252
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=41.74 E-value=13 Score=30.52 Aligned_cols=12 Identities=0% Similarity=-0.075 Sum_probs=8.4
Q ss_pred HcCCcEEEecCC
Q 027747 47 AFGMRSVVYVPH 58 (219)
Q Consensus 47 ~~g~p~ViGTTG 58 (219)
+-+.|+|+|||+
T Consensus 102 ~g~~p~vvaTsA 113 (192)
T 3dcm_X 102 EGERPLIFFTSA 113 (192)
T ss_dssp HSSCCEEEECCS
T ss_pred cCCccEEEEeCC
Confidence 456677777775
No 253
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=41.74 E-value=62 Score=24.00 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=19.2
Q ss_pred HHHHHHHcCCcEEEecCCCChhh-HHHHHHHhhccCceEEEcc
Q 027747 41 NVKQATAFGMRSVVYVPHIQLET-VSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 41 ~~~~~~~~g~p~ViGTTG~~~~~-~~~l~~~a~~~~~~vv~sp 82 (219)
.++...+....+|+=..--++.+ ...|..+|+++++|+++.+
T Consensus 28 v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~ 70 (121)
T 2lbw_A 28 VVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIP 70 (121)
T ss_dssp HHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECC
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEEC
Confidence 33333344444444444444432 4445555555555554443
No 254
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=41.67 E-value=51 Score=26.07 Aligned_cols=33 Identities=6% Similarity=-0.020 Sum_probs=19.1
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|.+|=+.......+.++.+.+.|+|+|.--+
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~ 90 (272)
T 3o74_A 58 RCDALFVASCLPPEDDSYRELQDKGLPVIAIDR 90 (272)
T ss_dssp TCSEEEECCCCCSSCCHHHHHHHTTCCEEEESS
T ss_pred CCCEEEEecCccccHHHHHHHHHcCCCEEEEcc
Confidence 577555443321224566677778888876544
No 255
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=41.65 E-value=82 Score=21.63 Aligned_cols=54 Identities=7% Similarity=-0.001 Sum_probs=27.4
Q ss_pred ccccCHHHHHhcccCCCCCc-EEEECCChhhH-HHHHHHHHHc--CCcEEEecCCCChh
Q 027747 8 PVMSDLTMVLGSISQSKARA-VVIDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQLE 62 (219)
Q Consensus 8 ~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~~-~~~~~~~~~~--g~p~ViGTTG~~~~ 62 (219)
....+.++++....+ ..+| |++|+..|+.- .+.++...+. .+|+|+=|..-+.+
T Consensus 35 ~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~ 92 (130)
T 3eod_A 35 VLAADGVDALELLGG-FTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMA 92 (130)
T ss_dssp EEESCHHHHHHHHTT-CCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCCHH
T ss_pred EEeCCHHHHHHHHhc-CCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHH
Confidence 345567776654422 4578 57788777522 3444444433 46776665555443
No 256
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=41.62 E-value=58 Score=24.46 Aligned_cols=55 Identities=11% Similarity=-0.001 Sum_probs=32.9
Q ss_pred HHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 13 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
+.+++. .+|++|--|..+..--.+-.|+..|+|+|+.-+| .+.++.+....++++
T Consensus 91 ~~~~~~------~adi~v~ps~~e~~~~~~~Eama~G~PvI~~~~~-------~~~e~i~~~~~g~~~ 145 (177)
T 2f9f_A 91 LIDLYS------RCKGLLCTAKDEDFGLTPIEAMASGKPVIAVNEG-------GFKETVINEKTGYLV 145 (177)
T ss_dssp HHHHHH------HCSEEEECCSSCCSCHHHHHHHHTTCCEEEESSH-------HHHHHCCBTTTEEEE
T ss_pred HHHHHH------hCCEEEeCCCcCCCChHHHHHHHcCCcEEEeCCC-------CHHHHhcCCCccEEe
Confidence 455554 4788776566665555567777888888875443 233344334455565
No 257
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=41.55 E-value=96 Score=28.03 Aligned_cols=77 Identities=5% Similarity=0.038 Sum_probs=44.3
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECC-Chh---------hHHHHHHHH---HHcCCcEEEecCCCChhhHHHHHHHhhc
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFT-DAS---------TVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDK 73 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS-~p~---------~~~~~~~~~---~~~g~p~ViGTTG~~~~~~~~l~~~a~~ 73 (219)
+..++|+++++. .+|++|=.. .|. .+.+.++.. ++.+.-+|..+| ..+..-+++.+..++
T Consensus 66 l~~t~d~~ea~~------~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~ST-v~pgt~~~l~~~l~~ 138 (450)
T 3gg2_A 66 LRFGTEIEQAVP------EADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKST-VPVGSYRLIRKAIQE 138 (450)
T ss_dssp EEEESCHHHHGG------GCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC-CCTTHHHHHHHHHHH
T ss_pred EEEECCHHHHHh------cCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeee-CCCcchHHHHHHHHH
Confidence 556778888775 689776443 231 455554443 344555555555 555444444443322
Q ss_pred --------cCceEEEccChhHHHHH
Q 027747 74 --------ASMGCLIAPTLSIGSIL 90 (219)
Q Consensus 74 --------~~~~vv~spNfSlGv~l 90 (219)
...+++++|.|.--..+
T Consensus 139 ~~~~~~~~~d~~v~~~Pe~a~eG~~ 163 (450)
T 3gg2_A 139 ELDKREVLIDFDIASNPEFLKEGNA 163 (450)
T ss_dssp HHHHTTCCCCEEEEECCCCCCTTSH
T ss_pred hccccCcCcceeEEechhhhcccch
Confidence 24799999998654333
No 258
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=40.97 E-value=30 Score=32.47 Aligned_cols=48 Identities=8% Similarity=0.132 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCC----ChhhHHHHHHHhhccCceEEEcc
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHI----QLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~----~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
++.+.+.++..-...+++|+.||.. ..++++.|.++|.++++|+++=-
T Consensus 202 ~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDe 253 (501)
T 3hl2_A 202 LKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNN 253 (501)
T ss_dssp HHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeC
Confidence 6777777775523567888888753 44789999999999999999853
No 259
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=40.58 E-value=79 Score=25.24 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=40.7
Q ss_pred CcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc--ChhHHH
Q 027747 26 RAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP--TLSIGS 88 (219)
Q Consensus 26 ~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp--NfSlGv 88 (219)
.|+ ..-|++++-+.+.++.+.+.|..+|+|-+ ...++|++.++|.++-. .-|+--
T Consensus 118 ~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG~~--------~~~~~A~~~Gl~~vli~sg~eSI~~ 175 (196)
T 2q5c_A 118 VKIKEFLFSSEDEITTLISKVKTENIKIVVSGK--------TVTDEAIKQGLYGETINSGEESLRR 175 (196)
T ss_dssp CEEEEEEECSGGGHHHHHHHHHHTTCCEEEECH--------HHHHHHHHTTCEEEECCCCHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCeEEECCH--------HHHHHHHHcCCcEEEEecCHHHHHH
Confidence 453 56689999999999999999999999943 23556777888865543 455544
No 260
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=40.57 E-value=1e+02 Score=25.10 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=22.3
Q ss_pred CCcEEEEC-CChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDF-TDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDF-S~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|.+|=+ ..++...+.++.+.+.|+|+|.--+
T Consensus 59 ~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 59 GVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDR 92 (330)
T ss_dssp TCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESS
T ss_pred CCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECC
Confidence 57855533 3445667778888888888886433
No 261
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=40.54 E-value=1.3e+02 Score=23.85 Aligned_cols=33 Identities=6% Similarity=-0.133 Sum_probs=18.2
Q ss_pred CCcEEEECCCh----hhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDA----STVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p----~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|.+|=+... +...+.++.+.+.|+|+|.--+
T Consensus 71 ~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~ 107 (298)
T 3tb6_A 71 HIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINA 107 (298)
T ss_dssp CCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESS
T ss_pred CCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEec
Confidence 57755533321 1344566667777777775433
No 262
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=40.23 E-value=72 Score=22.64 Aligned_cols=10 Identities=20% Similarity=0.056 Sum_probs=4.2
Q ss_pred HHHHHcCCcE
Q 027747 43 KQATAFGMRS 52 (219)
Q Consensus 43 ~~~~~~g~p~ 52 (219)
.+|.++++|+
T Consensus 52 ~~c~~~~vp~ 61 (101)
T 1w41_A 52 YYARLSGIPV 61 (101)
T ss_dssp HHHHHHTCCE
T ss_pred HHHHhcCCCE
Confidence 3344444443
No 263
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=40.08 E-value=1.1e+02 Score=24.01 Aligned_cols=59 Identities=5% Similarity=0.027 Sum_probs=45.7
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
-.++|=+...+.+....+...+.|.++..-..+.++++.+.+.+.-++....|+++.|.
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~ 90 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDV 90 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecCh
Confidence 46788666677778888888888999998888898877666555545577889999885
No 264
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=39.50 E-value=55 Score=22.91 Aligned_cols=53 Identities=4% Similarity=0.068 Sum_probs=26.8
Q ss_pred cccCHHHHHhcccC----CCCCc-EEEECCChhh-HHHHHHHHHH------cCCcEEEecCCCCh
Q 027747 9 VMSDLTMVLGSISQ----SKARA-VVIDFTDAST-VYDNVKQATA------FGMRSVVYVPHIQL 61 (219)
Q Consensus 9 v~~~l~~~l~~~~~----~~~~D-VvIDFS~p~~-~~~~~~~~~~------~g~p~ViGTTG~~~ 61 (219)
...+.++++....+ ...+| |++|...|+. -.+.++...+ ..+|+|+-|+..+.
T Consensus 40 ~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~~ 104 (146)
T 3ilh_A 40 SVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDP 104 (146)
T ss_dssp EESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCCH
T ss_pred ecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCCh
Confidence 34566665543221 13577 5778777652 2344444443 35566655554444
No 265
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=39.39 E-value=40 Score=28.10 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=34.1
Q ss_pred EEEEC------CChhhHHHHHHHHHHcCCcEEEecCCCChhh----HHHHHHHhhccCceE
Q 027747 28 VVIDF------TDASTVYDNVKQATAFGMRSVVYVPHIQLET----VSALSAFCDKASMGC 78 (219)
Q Consensus 28 VvIDF------S~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~----~~~l~~~a~~~~~~v 78 (219)
++++| ..++.+.+.++.+.+.++|+++|=-|..... ++.+.+++++++++.
T Consensus 191 ~v~s~H~Y~~~~~~~~~~~~~~~~~~~~~Pv~igEfG~~~~~~~~~~~~~~~~~~~~~i~~ 251 (302)
T 1bqc_A 191 TVFSIHMYGVYSQASTITSYLEHFVNAGLPLIIGEFGHDHSDGNPDEDTIMAEAERLKLGY 251 (302)
T ss_dssp EEEEEEESGGGCSHHHHHHHHHHHHHHTCCEEEEEECCTTSTTCCCHHHHHHHHHHHTCEE
T ss_pred EEEEEEEccCCCCHHHHHHHHHHHHHCCCCEEEEeecCCCCCCchHHHHHHHHHHHcCCEE
Confidence 56665 3467778888888889999999988775421 344555555555553
No 266
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=39.37 E-value=13 Score=27.62 Aligned_cols=30 Identities=7% Similarity=0.048 Sum_probs=23.6
Q ss_pred EEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 52 SVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 52 ~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++|+.|||+.++.+.|+++..+.|. -++++
T Consensus 25 ~~Ic~sGf~~~er~~l~~~i~~~GG--~~~~~ 54 (112)
T 3l46_A 25 CILSFLGFSDEEKTNMEEMTEMQGG--KYLPL 54 (112)
T ss_dssp CEECEESCCHHHHHHHHHHHHHTTC--EECCT
T ss_pred eEEEEeCCCHHHHHHHHHHHHHcCC--EECcc
Confidence 6999999999999999999865543 55553
No 267
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=39.34 E-value=50 Score=25.25 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=26.9
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecCCCC-hhhHHHHHH
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVPHIQ-LETVSALSA 69 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTTG~~-~~~~~~l~~ 69 (219)
+|+.+.+.++++.+.|+++.+-|.|+- ++..++|.+
T Consensus 17 ~~~~~~~l~~~~~~~g~~~~l~TNG~l~~~~~~~l~~ 53 (182)
T 3can_A 17 HPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMR 53 (182)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHh
Confidence 567677899999999999999999974 333344433
No 268
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6
Probab=39.32 E-value=77 Score=28.86 Aligned_cols=75 Identities=11% Similarity=-0.010 Sum_probs=45.6
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCCh-hhHHHHHHHH---HHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDA-STVYDNVKQA---TAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p-~~~~~~~~~~---~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
+..+.++++++.+. ..+|+||=...+ ..+.+.++.. ++.|..+|.+++|...+ ..++.+...+.++..+-+|
T Consensus 53 i~~~~~~~e~v~~l---~~aDvVilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~-~~~l~~~l~~~g~~~v~~p 128 (478)
T 1pgj_A 53 LKAFETMEAFAASL---KKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKD-QGRRAQQLEAAGLRFLGMG 128 (478)
T ss_dssp EEECSCHHHHHHHB---CSSCEEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHH-HHHHHHHHHTTTCEEEEEE
T ss_pred eEEECCHHHHHhcc---cCCCEEEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHH-HHHHHHHHHHCCCeEEEee
Confidence 55677888887521 248988876665 3566665433 34577778888887543 3445555544555555556
Q ss_pred Chh
Q 027747 83 TLS 85 (219)
Q Consensus 83 NfS 85 (219)
+++
T Consensus 129 v~g 131 (478)
T 1pgj_A 129 ISG 131 (478)
T ss_dssp EES
T ss_pred ccC
Confidence 553
No 269
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=39.11 E-value=81 Score=22.61 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=46.5
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHH
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 88 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv 88 (219)
.+++.+.+ .+.|+-|+-.....+.+. ....-+|+-|+-+.. .++++++.+.+.++|++..+.+..|.
T Consensus 23 kl~~~~~~----~gi~~~i~~~~~~~~~~~-----~~~~D~Ii~t~~l~~-~~~~~~~~~~~~~~pv~~I~~~~y~~ 89 (109)
T 2l2q_A 23 RIEKYAKS----KNINATIEAIAETRLSEV-----VDRFDVVLLAPQSRF-NKKRLEEITKPKGIPIEIINTIDYGT 89 (109)
T ss_dssp HHHHHHHH----HTCSEEEEEECSTTHHHH-----TTTCSEEEECSCCSS-HHHHHHHHHHHHTCCEEECCHHHHHH
T ss_pred HHHHHHHH----CCCCeEEEEecHHHHHhh-----cCCCCEEEECCccHH-HHHHHHHHhcccCCCEEEEChHHhcc
Confidence 44555543 245666766655555553 246789999998865 47888887766789999999988863
No 270
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=39.09 E-value=44 Score=28.32 Aligned_cols=41 Identities=5% Similarity=0.028 Sum_probs=28.9
Q ss_pred HHHHcCCcEEEecCCC------ChhhHHHHHHHhhccCceEEEc-cChh
Q 027747 44 QATAFGMRSVVYVPHI------QLETVSALSAFCDKASMGCLIA-PTLS 85 (219)
Q Consensus 44 ~~~~~g~p~ViGTTG~------~~~~~~~l~~~a~~~~~~vv~s-pNfS 85 (219)
++.++|+..+ |..|+ ++.++.+|.+.+++.++++|+. +++|
T Consensus 176 ~~~~yGl~~~-~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~ 223 (282)
T 3mfq_A 176 FAASYDFTLY-APQGVSTDSEVANSDMIETVNLIIDHNIKAIFTESTTN 223 (282)
T ss_dssp HHHHTTCEEE-CSSCSSSCSCCCHHHHHHHHHHHHHHTCCEEECBTTSC
T ss_pred HHHHCCCeEe-cccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3457788854 55453 5678888988888899987765 4554
No 271
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=38.94 E-value=94 Score=22.85 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHHcCCcEEEe
Q 027747 36 STVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViG 55 (219)
+.+.+.+..|.+.|. ++.|
T Consensus 12 ~~i~~~L~la~kagk-~~~G 30 (112)
T 3iz5_f 12 ENINNKLQLVMKSGK-YTLG 30 (112)
T ss_dssp GHHHHHHHHHHTTCE-EEES
T ss_pred HHHHHHHHHHHHhCC-eeEC
Confidence 345555566666553 4443
No 272
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=38.92 E-value=1.1e+02 Score=22.09 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=20.1
Q ss_pred CcEEEECCCh--------hhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 26 RAVVIDFTDA--------STVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 26 ~DVvIDFS~p--------~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
..|+||||.- .++....+.+.+.|..+++. |.++
T Consensus 53 ~~vvlDls~V~~iDSsGl~~L~~~~~~~~~~g~~l~l~--~~~~ 94 (125)
T 2ka5_A 53 NKIFLVLSDVESIDSFSLGVIVNILKSISSSGGFFALV--SPNE 94 (125)
T ss_dssp CEEEEECTTCSCCCHHHHHHHHHHHHHHHHHTCEEEEE--CCCH
T ss_pred CEEEEECCCCCEEcHHHHHHHHHHHHHHHHcCCEEEEE--eCCH
Confidence 3577777753 33355556666667777663 4554
No 273
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=38.65 E-value=58 Score=25.90 Aligned_cols=38 Identities=8% Similarity=0.084 Sum_probs=28.7
Q ss_pred HHHHHHcCCcEEE-ecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 42 VKQATAFGMRSVV-YVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 42 ~~~~~~~g~p~Vi-GTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
++...+.+.|+++ |- .+..+..+.|.+++++ ++||+-+
T Consensus 29 a~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT 67 (174)
T 1ytl_A 29 ANMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVAT 67 (174)
T ss_dssp HHHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEE
T ss_pred HHHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEc
Confidence 4445577788765 55 6666667889999999 9999976
No 274
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=38.60 E-value=30 Score=26.41 Aligned_cols=7 Identities=14% Similarity=0.525 Sum_probs=3.3
Q ss_pred EEECCCh
Q 027747 29 VIDFTDA 35 (219)
Q Consensus 29 vIDFS~p 35 (219)
++|.+.+
T Consensus 34 ~~~~~~~ 40 (161)
T 3hly_A 34 MVDLRAV 40 (161)
T ss_dssp EEETTTC
T ss_pred EEECCCC
Confidence 4455443
No 275
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=38.47 E-value=1.5e+02 Score=23.68 Aligned_cols=68 Identities=10% Similarity=-0.040 Sum_probs=36.9
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHH
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISA 98 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~a 98 (219)
.+|.+|=+. .++...+.++.+.+.|+|+|.--+...... +. .....+.|.+-|+..|-.+...+++.+
T Consensus 59 ~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~~~~~---~~---~~~~~~~V~~d~~~~g~~~~~~L~~~~ 127 (309)
T 2fvy_A 59 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA---LD---SYDKAYYVGTDSKESGIIQGDLIAKHW 127 (309)
T ss_dssp TCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSCCCHHH---HH---TCTTEEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCCCCccc---cc---ccCccEEEecCHHHHHHHHHHHHHHHH
Confidence 577555443 344445667777778888776544332211 10 012355666666666666666665543
No 276
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=38.46 E-value=38 Score=29.63 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=38.6
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
=+-||=++|+++.. |++.|.++|=-.||+..+ +.+-.++.+++.|+++-.+
T Consensus 87 piSIDT~~~~Va~a----Al~aGa~iINDVsg~~~d--~~m~~v~a~~~~~vvlmh~ 137 (314)
T 2vef_A 87 LISIDTWKSQVAEA----ALAAGADLVNDITGLMGD--EKMPHVVAEARAQVVIMFN 137 (314)
T ss_dssp EEEEECSCHHHHHH----HHHTTCCEEEETTTTCSC--TTHHHHHHHHTCEEEEECC
T ss_pred eEEEeCCCHHHHHH----HHHcCCCEEEECCCCCCC--hHHHHHHHHcCCCEEEEec
Confidence 37899999988655 455699999999998643 2455666778899999644
No 277
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=38.37 E-value=1.1e+02 Score=27.97 Aligned_cols=72 Identities=10% Similarity=0.066 Sum_probs=41.6
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECC-Ch---------hhHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhc
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFT-DA---------STVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDK 73 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS-~p---------~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~ 73 (219)
+..++|+++.+. .+|++|=.. .| ..+.+.++...+ .+. +|+-+++.....-+.+.+...+
T Consensus 72 l~~ttd~~~a~~------~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~-iVV~~STv~~gt~~~l~~~l~~ 144 (478)
T 2y0c_A 72 LRFSTDIEAAVA------HGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFK-VIVDKSTVPVGTAERVRAAVAE 144 (478)
T ss_dssp EEEECCHHHHHH------HCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCE-EEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEECCHHHHhh------cCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCC-EEEEeCCcCCCchHHHHHHHHH
Confidence 456678877765 589777553 33 566666654443 343 4555566555443444433322
Q ss_pred --------cCceEEEccChh
Q 027747 74 --------ASMGCLIAPTLS 85 (219)
Q Consensus 74 --------~~~~vv~spNfS 85 (219)
...+++++|.|.
T Consensus 145 ~~~~g~~~~~~~v~~~Pe~~ 164 (478)
T 2y0c_A 145 ELAKRGGDQMFSVVSNPEFL 164 (478)
T ss_dssp HHHHTTCCCCEEEEECCCCC
T ss_pred HhcCCCCCccEEEEEChhhh
Confidence 235889999875
No 278
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=38.29 E-value=1.3e+02 Score=22.75 Aligned_cols=71 Identities=7% Similarity=-0.019 Sum_probs=43.6
Q ss_pred CCCcEEEECCCh-hhHHHHHHHHHHcC-CcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHh
Q 027747 24 KARAVVIDFTDA-STVYDNVKQATAFG-MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISAS 99 (219)
Q Consensus 24 ~~~DVvIDFS~p-~~~~~~~~~~~~~g-~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa 99 (219)
..+|+||..+.. +.....+..+.+.+ ...|+..+ -+++..+.+++ .++..+++|....|-.+...+.+...
T Consensus 104 ~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~~~~~~~~l~~----~G~~~vi~p~~~~a~~l~~~~~~~~~ 176 (183)
T 3c85_A 104 GHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIA-EYPDQLEGLLE----SGVDAAFNIYSEAGSGFARHVCKQLE 176 (183)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEE-SSHHHHHHHHH----HTCSEEEEHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEE-CCHHHHHHHHH----cCCCEEEchHHHHHHHHHHHHHHhcC
Confidence 468998886654 44444456666655 33444433 33444444433 46778899999888888777766553
No 279
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=38.25 E-value=57 Score=26.33 Aligned_cols=30 Identities=20% Similarity=-0.040 Sum_probs=15.5
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=+. +....+.++.+.+.|+|+|.-
T Consensus 66 ~vdgiIi~~-~~~~~~~~~~l~~~~iPvV~i 95 (288)
T 3gv0_A 66 SADGVIISK-IEPNDPRVRFMTERNMPFVTH 95 (288)
T ss_dssp CCSEEEEES-CCTTCHHHHHHHHTTCCEEEE
T ss_pred CccEEEEec-CCCCcHHHHHHhhCCCCEEEE
Confidence 567444222 111224556666777777754
No 280
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=37.94 E-value=59 Score=26.03 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=30.9
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHh
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a 71 (219)
.|+|.++. .+||+||-.+.. ...+..+...+.|+|+|.-....-++-.+.++.++
T Consensus 48 ~n~E~i~~-----l~PDLIi~~~~~-~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg 102 (245)
T 1n2z_A 48 MNLERIVA-----LKPDLVIAWRGG-NAERQVDQLASLGIKVMWVDATSIEQIANALRQLA 102 (245)
T ss_dssp ECHHHHHH-----TCCSEEEECTTT-SCHHHHHHHHHHTCCEEECCCCSHHHHHHHHHHHG
T ss_pred CCHHHHhc-----cCCCEEEEeCCC-CcHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHH
Confidence 48888887 479988874321 11234455557888887643211122234555555
No 281
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=37.71 E-value=60 Score=26.28 Aligned_cols=23 Identities=13% Similarity=-0.042 Sum_probs=9.5
Q ss_pred HHHHHHHHHHhhcCCCeeeeccc
Q 027747 195 MPGLILAIRKVVHLKNLVYGLEK 217 (219)
Q Consensus 195 a~Gal~Aa~~l~~~~~g~y~m~d 217 (219)
...+-..++||.+...-+.+.+|
T Consensus 260 ~~~~~~s~~~Lr~~~~~~~~~~~ 282 (286)
T 3dx5_A 260 KDILKAEMKVLTNRNLEVVTSEN 282 (286)
T ss_dssp HHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHhcCceEeeccc
Confidence 44566677777665543444343
No 282
>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*
Probab=37.58 E-value=34 Score=29.52 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=18.1
Q ss_pred CCcEEEECCChhhHH-HHHHHHHHcCCcEEE
Q 027747 25 ARAVVIDFTDASTVY-DNVKQATAFGMRSVV 54 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~-~~~~~~~~~g~p~Vi 54 (219)
.+|+|||-+.--.+. ..-+.|.+.++|+|.
T Consensus 137 ~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~ 167 (292)
T 3h8v_A 137 PVDLVLSCVDNFEARMTINTACNELGQTWME 167 (292)
T ss_dssp CCSEEEECCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEECCcchhhhhHHHHHHHHhCCCEEE
Confidence 467777766544333 333667777777764
No 283
>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}
Probab=37.55 E-value=1.1e+02 Score=25.93 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=36.3
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHc--CCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~--g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
++++++. .+|+||=...+....+.++..... .-.+|+-+|+.++....++.+..++.++..
T Consensus 80 s~~e~~~------~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~ 142 (317)
T 4ezb_A 80 DDVAGIA------CADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSF 142 (317)
T ss_dssp SSGGGGG------GCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEE
T ss_pred CHHHHHh------cCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeE
Confidence 5666654 589888776666666666544432 223555555666666667766655554433
No 284
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=37.53 E-value=1e+02 Score=21.43 Aligned_cols=56 Identities=13% Similarity=0.070 Sum_probs=32.9
Q ss_pred cccccCHHHHHhcccCC---------CCCc-EEEECCChhh-HHHHHHHHHH----cCCcEEEecCCCChh
Q 027747 7 IPVMSDLTMVLGSISQS---------KARA-VVIDFTDAST-VYDNVKQATA----FGMRSVVYVPHIQLE 62 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~---------~~~D-VvIDFS~p~~-~~~~~~~~~~----~g~p~ViGTTG~~~~ 62 (219)
+....+.++++....+. ..+| |++|+..|+. -.+.++...+ ..+|+|+-|..-+.+
T Consensus 35 v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~ 105 (149)
T 1k66_A 35 IYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPK 105 (149)
T ss_dssp EEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCCHH
T ss_pred EEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCCHH
Confidence 44466777766543321 4688 5789888752 3455555554 357777766655443
No 285
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=37.08 E-value=1.1e+02 Score=21.71 Aligned_cols=90 Identities=12% Similarity=0.081 Sum_probs=47.5
Q ss_pred cccccCHHHHHhccc--------CCCCCc-EEEECCChhh-HHHHHHHHHH----cCCcEEEecCCCChhhHHHHHHHhh
Q 027747 7 IPVMSDLTMVLGSIS--------QSKARA-VVIDFTDAST-VYDNVKQATA----FGMRSVVYVPHIQLETVSALSAFCD 72 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~--------~~~~~D-VvIDFS~p~~-~~~~~~~~~~----~g~p~ViGTTG~~~~~~~~l~~~a~ 72 (219)
+....+.++++.... +...+| |++|+..|+. -.+.++...+ .++|+|+-|+..+.+......+
T Consensus 33 v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~~~~~~~~--- 109 (152)
T 3heb_A 33 IIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYD--- 109 (152)
T ss_dssp EEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHHHHHHHHH---
T ss_pred EEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHHHHHHHHH---
Confidence 444567777765431 234689 6889988753 3455555554 4678887776555433222222
Q ss_pred ccCceEEEccChhHHHHHHHHHHHHHhhhc
Q 027747 73 KASMGCLIAPTLSIGSILLQQAAISASFHY 102 (219)
Q Consensus 73 ~~~~~vv~spNfSlGv~ll~~~~~~aa~~~ 102 (219)
.+.--++.--++. .-|...++.+.+++
T Consensus 110 -~g~~~~l~KP~~~--~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 110 -LGANVYITKPVNY--ENFANAIRQLGLFF 136 (152)
T ss_dssp -TTCSEEEECCSSH--HHHHHHHHHHHHHH
T ss_pred -CCCcEEEeCCCCH--HHHHHHHHHHHHHH
Confidence 3333333333443 33444455555543
No 286
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=36.88 E-value=40 Score=25.45 Aligned_cols=58 Identities=14% Similarity=0.029 Sum_probs=35.6
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++.+++. .+|++|--|..+..--.+-.|+..|+|+|.--+|. +.++. ....++++.++
T Consensus 108 ~~~~~~~------~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~-------~~e~~-~~~~g~~~~~~ 165 (200)
T 2bfw_A 108 FVRELYG------SVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGG-------LRDII-TNETGILVKAG 165 (200)
T ss_dssp HHHHHHT------TCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHH-------HHHHC-CTTTCEEECTT
T ss_pred HHHHHHH------HCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCC-------hHHHc-CCCceEEecCC
Confidence 4555664 58888877776666666777788888877654432 23333 34456666553
No 287
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=36.86 E-value=43 Score=29.45 Aligned_cols=51 Identities=10% Similarity=0.067 Sum_probs=39.9
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
=+-||=+.|+++...++ .|.++|=-.+|++.+ .+-.++.+.+.|+|+-++-
T Consensus 107 pISIDT~~~~Va~aAl~----aGa~iINDVsg~~~~---~m~~v~a~~g~~vVlMh~~ 157 (314)
T 3tr9_A 107 LISVDTSRPRVMREAVN----TGADMINDQRALQLD---DALTTVSALKTPVCLMHFP 157 (314)
T ss_dssp EEEEECSCHHHHHHHHH----HTCCEEEETTTTCST---THHHHHHHHTCCEEEECCC
T ss_pred eEEEeCCCHHHHHHHHH----cCCCEEEECCCCCch---HHHHHHHHhCCeEEEECCC
Confidence 38999999998766655 499999999999854 4555666788999997753
No 288
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=36.76 E-value=89 Score=27.49 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=47.8
Q ss_pred CCcEEEECCChh-hHHHHHHHHHHcC-CcEEEecCC---CChhhHHHHHHHhhccCceEEEccChhHHH
Q 027747 25 ARAVVIDFTDAS-TVYDNVKQATAFG-MRSVVYVPH---IQLETVSALSAFCDKASMGCLIAPTLSIGS 88 (219)
Q Consensus 25 ~~DVvIDFS~p~-~~~~~~~~~~~~g-~p~ViGTTG---~~~~~~~~l~~~a~~~~~~vv~spNfSlGv 88 (219)
.++|.|=+..|. .-.+.++.+++.| .-+|+-++| ..++-.+.|+++.+ +++|||.++--.-|.
T Consensus 220 ~~~V~il~~~pG~~~~~~l~a~~~~g~~GiVle~~G~Gn~p~~~~~~l~~a~~-~Gi~VV~~Src~~G~ 287 (334)
T 3nxk_A 220 LPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKDVLKELLK-KGLKVVVSSRVVAGC 287 (334)
T ss_dssp CCCEEEEECCTTCCHHHHHHHHHHTTCCEEEEEEBTTTBCCHHHHHHHHHHHT-TTCEEEEEESSSBSC
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHhCCCCEEEEeeECCCCCcHHHHHHHHHHHH-CCCEEEEeCCCCCCc
Confidence 467888888898 8889999888876 578888887 34555677888764 789999986654443
No 289
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=36.47 E-value=70 Score=23.21 Aligned_cols=20 Identities=10% Similarity=-0.195 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHcCCcEEE
Q 027747 35 ASTVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~Vi 54 (219)
++.....-.+|.++++|+++
T Consensus 49 ~~~~~~l~~~c~~~~Vp~~~ 68 (110)
T 3cpq_A 49 KDLEEDVKYYAKLSNIPVYQ 68 (110)
T ss_dssp HHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHcCCCEEE
Confidence 34444444555556666543
No 290
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=36.46 E-value=70 Score=27.13 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=26.3
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT 56 (219)
.|+|.++. .+||+||-.... .+..+...+.|+|+|.-.
T Consensus 107 ~n~E~i~a-----l~PDLIi~~~~~---~~~~~~L~~~gipvv~~~ 144 (335)
T 4hn9_A 107 FNTEACVA-----ATPDVVFLPMKL---KKTADTLESLGIKAVVVN 144 (335)
T ss_dssp ECHHHHHH-----TCCSEEEEEGGG---HHHHHHHHHTTCCEEEEC
T ss_pred CCHHHHHh-----cCCCEEEEeCcc---hhHHHHHHHcCCCEEEEc
Confidence 48888887 489988764432 345556667889988754
No 291
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=36.39 E-value=52 Score=28.25 Aligned_cols=73 Identities=12% Similarity=-0.007 Sum_probs=48.3
Q ss_pred HHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCC------------------hhhHHHHHHHhhcc
Q 027747 13 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ------------------LETVSALSAFCDKA 74 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~------------------~~~~~~l~~~a~~~ 74 (219)
++.+|+. .+|+|=|.|--..-.+.++.+.++|+|+|+-.+... .+.+.+.-+.+.+.
T Consensus 93 a~aAl~a-----Ga~iINdvsg~~~d~~m~~~~a~~~~~vVlmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~ 167 (280)
T 1eye_A 93 ARAALQN-----GAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAA 167 (280)
T ss_dssp HHHHHHT-----TCCEEEETTTTSSCTTHHHHHHHHTCCEEEECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHc-----CCCEEEECCCCCCCHHHHHHHHHhCCeEEEEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHc
Confidence 3455553 689999998543344678888999999999775321 11222333445678
Q ss_pred Cce---EEEccChhHHHHH
Q 027747 75 SMG---CLIAPTLSIGSIL 90 (219)
Q Consensus 75 ~~~---vv~spNfSlGv~l 90 (219)
+++ +++=|.|..|-+.
T Consensus 168 Gi~~~~IilDPg~Gf~k~~ 186 (280)
T 1eye_A 168 GVDPARLVLDPGLGFAKTA 186 (280)
T ss_dssp TCCGGGEEEECCTTSSCCH
T ss_pred CCChhhEEEECCCCcccCH
Confidence 898 9999987655544
No 292
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=36.27 E-value=34 Score=24.30 Aligned_cols=55 Identities=7% Similarity=0.039 Sum_probs=31.9
Q ss_pred cccccCHHHHHhcccCCCCCc-EEEECCChh--hHHHHHHHHHH-cCCcEEEecCCCCh
Q 027747 7 IPVMSDLTMVLGSISQSKARA-VVIDFTDAS--TVYDNVKQATA-FGMRSVVYVPHIQL 61 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~--~~~~~~~~~~~-~g~p~ViGTTG~~~ 61 (219)
+....+.++++....+...+| |++|...|+ .-.+.++...+ ..+|+|+=|...+.
T Consensus 32 v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~ 90 (140)
T 3h5i_A 32 VEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEP 90 (140)
T ss_dssp EEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESSSSC
T ss_pred EEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECCCCH
Confidence 334567777665443334688 678988874 33444444333 46777776654443
No 293
>3u4g_A NAMN:DMB phosphoribosyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.90A {Pyrococcus horikoshii}
Probab=36.01 E-value=6.7 Score=35.07 Aligned_cols=59 Identities=15% Similarity=0.044 Sum_probs=36.6
Q ss_pred cEEEE-CCChhhHHHHHHHHHHcCCcEEEecCCCChhhH-HHHHHHhhccCceEEEc-cChh
Q 027747 27 AVVID-FTDASTVYDNVKQATAFGMRSVVYVPHIQLETV-SALSAFCDKASMGCLIA-PTLS 85 (219)
Q Consensus 27 DVvID-FS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~-~~l~~~a~~~~~~vv~s-pNfS 85 (219)
-||+| |+.-.++...++.....-.++.||||.|=.++. ..+..++++-++|++++ +|||
T Consensus 223 ~VvL~GG~qm~Aaal~a~~l~p~~~~~~i~TT~~v~~D~~a~~~~l~~~i~v~~~~~~~~F~ 284 (337)
T 3u4g_A 223 DVVLAGGTQMLAVSALLKSLGEDLSRFMIATTRWVVEDPSATFIETAREIGIISYVAELDFS 284 (337)
T ss_dssp EEEEESSHHHHHHHHHHHHTTCCCTTEEEEEEHHHHHCTTCCHHHHHHHHTCEEEEECCCCT
T ss_pred CEEEeCcHHHHHHHHHHHHhCCccCCeEEEEeeeeeeCCCcCHHHHHHHhCCeEEEeCCCCC
Confidence 46555 787666655555443233679999999966542 34666666556777543 4554
No 294
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=35.97 E-value=1.2e+02 Score=27.90 Aligned_cols=38 Identities=21% Similarity=0.228 Sum_probs=24.4
Q ss_pred CCc-EEEECCCh--hhHHHHHHHHHHc--CCcEEEecCCCChhh
Q 027747 25 ARA-VVIDFTDA--STVYDNVKQATAF--GMRSVVYVPHIQLET 63 (219)
Q Consensus 25 ~~D-VvIDFS~p--~~~~~~~~~~~~~--g~p~ViGTTG~~~~~ 63 (219)
.+| ++||.+++ ..+.+.++...+. ++|+|.|+-+ +.++
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~-t~e~ 310 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVA-TAEA 310 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEEC-SHHH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeec-cHHH
Confidence 688 57888876 3455666666655 5788877654 4443
No 295
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=35.92 E-value=61 Score=27.27 Aligned_cols=40 Identities=5% Similarity=0.066 Sum_probs=23.7
Q ss_pred HHHHHHHcCCcEEE--ecCCCChhhHHHHHHHhhccCceEEE
Q 027747 41 NVKQATAFGMRSVV--YVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 41 ~~~~~~~~g~p~Vi--GTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
.++..++.|...|+ ||+|.+.++..++-+..++.++|+++
T Consensus 28 ~l~~~~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~~~~Piil 69 (235)
T 3w01_A 28 DLDAICMSQTDAIMIGGTDDVTEDNVIHLMSKIRRYPLPLVL 69 (235)
T ss_dssp HHHHHHTSSCSEEEECCSSCCCHHHHHHHHHHHTTSCSCEEE
T ss_pred HHHHHHHcCCCEEEECCcCCcCHHHHHHHHHHhcCcCCCEEE
Confidence 44445666665544 66677776665555555456777743
No 296
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=35.58 E-value=1.1e+02 Score=21.37 Aligned_cols=56 Identities=7% Similarity=0.112 Sum_probs=34.4
Q ss_pred cccccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHH----cCCcEEEecCCCChhh
Q 027747 7 IPVMSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATA----FGMRSVVYVPHIQLET 63 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~----~g~p~ViGTTG~~~~~ 63 (219)
+....+.++++....+ ..+| |++|+..|+. -.+.++...+ .++|+|+=|.-.+.+.
T Consensus 34 v~~~~~~~~a~~~l~~-~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~~~ 95 (144)
T 3kht_A 34 LEFVDNGAKALYQVQQ-AKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSDDR 95 (144)
T ss_dssp EEEESSHHHHHHHHTT-CCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCHHH
T ss_pred EEEECCHHHHHHHhhc-CCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCHHH
Confidence 3446677777765433 4689 6889988863 3455555554 3577777666555443
No 297
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=35.55 E-value=74 Score=25.73 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=35.0
Q ss_pred cEEEECCCh---hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 27 AVVIDFTDA---STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 27 DVvIDFS~p---~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
-+++|+++| +.+...-+.|.++|..+++..+..+.++.+.++.+..+.=-++++.|
T Consensus 16 gvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 74 (289)
T 3k9c_A 16 GVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLG 74 (289)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEET
T ss_pred EEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEEC
Confidence 355577776 33445556777888888888887766566667776543223445444
No 298
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=35.51 E-value=88 Score=21.82 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=28.4
Q ss_pred cccccCHHHHHhcccC-----CCCCc-EEEECCChhh-HHHHHHHHHH----cCCcEEEecCCCCh
Q 027747 7 IPVMSDLTMVLGSISQ-----SKARA-VVIDFTDAST-VYDNVKQATA----FGMRSVVYVPHIQL 61 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~-----~~~~D-VvIDFS~p~~-~~~~~~~~~~----~g~p~ViGTTG~~~ 61 (219)
+....+.++++....+ ...+| |++|...|+. -.+.++...+ ..+|+|+-|...+.
T Consensus 36 v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~ 101 (143)
T 2qvg_A 36 IEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYTS 101 (143)
T ss_dssp EEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCCH
T ss_pred EEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCCCH
Confidence 3345566666554322 13578 5778877642 2344444443 34666665554443
No 299
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=35.50 E-value=1.5e+02 Score=23.60 Aligned_cols=31 Identities=26% Similarity=0.227 Sum_probs=19.4
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=+. .++...+.++.+.+.|+|+|.-
T Consensus 58 ~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~ 89 (290)
T 2fn9_A 58 GYDAIIFNPTDADGSIANVKRAKEAGIPVFCV 89 (290)
T ss_dssp TCSEEEECCSCTTTTHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEecCChHHHHHHHHHHHHCCCeEEEE
Confidence 678655443 3333445677777888888754
No 300
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=35.38 E-value=53 Score=28.85 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=43.8
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChh----------------hHHHHHHHhhccCce---EEEccChh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE----------------TVSALSAFCDKASMG---CLIAPTLS 85 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~----------------~~~~l~~~a~~~~~~---vv~spNfS 85 (219)
.+|+|=|.|--. ..+.++.+.++|.|+|+-.+...+. .+++.-+.+.+.|++ +++=|-|.
T Consensus 125 Ga~iINDVsg~~-~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG~G 203 (314)
T 3tr9_A 125 GADMINDQRALQ-LDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDPGFG 203 (314)
T ss_dssp TCCEEEETTTTC-STTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCC
T ss_pred CCCEEEECCCCC-chHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCC
Confidence 689999988755 4578888999999999988754421 123333456678997 99999766
No 301
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=35.37 E-value=16 Score=29.25 Aligned_cols=33 Identities=12% Similarity=-0.022 Sum_probs=21.5
Q ss_pred cEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 51 RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 51 p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
++|+..||+++++.+.|.+++++.+. .++.+|+
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~--~~~~~~~ 34 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKA--KKYTEFD 34 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTC--EEESSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHcCC--EEeCCCC
Confidence 46777888888777778888755433 3344443
No 302
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=35.16 E-value=59 Score=22.62 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=23.3
Q ss_pred ccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHHc---CCcEEEecCCCC
Q 027747 10 MSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATAF---GMRSVVYVPHIQ 60 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~~---g~p~ViGTTG~~ 60 (219)
..+.++++....+...+| |++|...|+. -.+.++...+. .+|+|+-|..-+
T Consensus 37 ~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~ 92 (136)
T 3hdv_A 37 ADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTD 92 (136)
T ss_dssp ESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCC
T ss_pred eCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCC
Confidence 445555544322222367 4667776642 23444444433 345554444333
No 303
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=34.88 E-value=50 Score=27.46 Aligned_cols=44 Identities=16% Similarity=0.215 Sum_probs=28.5
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecCCCChh--hHHHHHHHhhccCce
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVPHIQLE--TVSALSAFCDKASMG 77 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTTG~~~~--~~~~l~~~a~~~~~~ 77 (219)
+++.+.+.++.+.+.++|+++|=-|.... .++.+.+++++++++
T Consensus 197 ~~~~~~~~~~~~~~~~~Pv~igEfG~~~~~~~~~~~~~~~~~~~i~ 242 (294)
T 2whl_A 197 DANTVRSNIDRVIDQDLALVIGEFGHRHTDVDEDTILSYSEETGTG 242 (294)
T ss_dssp SHHHHHHHHHHHHTTTCCEEEEEECCCCCCCCHHHHHHHHHHHTCE
T ss_pred cHHHHHHHHHHHHHCCCCEEEEccCCCCCCccHHHHHHHHHHcCCe
Confidence 45677788888888999999987776532 233444444444444
No 304
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=34.83 E-value=1.4e+02 Score=25.99 Aligned_cols=72 Identities=8% Similarity=-0.106 Sum_probs=43.8
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH---cCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~---~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
|+....++++++... ..+|+||=...+..+.+.++.... .+.-+|.++|+... .-.++.+...++++..+=+
T Consensus 65 g~~~~~s~~e~~~~a---~~~DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~vda 139 (358)
T 4e21_A 65 GIAGARSIEEFCAKL---VKPRVVWLMVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQ-DDIRRADQMRAQGITYVDV 139 (358)
T ss_dssp TCBCCSSHHHHHHHS---CSSCEEEECSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHH-HHHHHHHHHHTTTCEEEEE
T ss_pred CCEEeCCHHHHHhcC---CCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChH-HHHHHHHHHHHCCCEEEeC
Confidence 566678888888631 235988877666666666655433 46667777776643 3344555554566655433
No 305
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=34.71 E-value=89 Score=26.30 Aligned_cols=76 Identities=8% Similarity=-0.048 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHcCCcEE--EecCC-------CChhhHHHHHHHhhccCceEEEccChhHHHH---HHHHHHHHHhhhcC
Q 027747 36 STVYDNVKQATAFGMRSV--VYVPH-------IQLETVSALSAFCDKASMGCLIAPTLSIGSI---LLQQAAISASFHYK 103 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~V--iGTTG-------~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~---ll~~~~~~aa~~~~ 103 (219)
+.+.+.+++|.+.|+.+. +++++ .++++..++-+.+.+.++-.+.-++ +.|+. ...++++.+.+.++
T Consensus 120 ~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~D-t~G~~~P~~~~~lv~~l~~~~~ 198 (295)
T 1ydn_A 120 ERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGD-TIGRGTPDTVAAMLDAVLAIAP 198 (295)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEE-TTSCCCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecC-CCCCcCHHHHHHHHHHHHHhCC
Confidence 445666899999999987 88873 4556655555555567777777665 56652 23455666655555
Q ss_pred CeEEEecC-CC
Q 027747 104 NVEIVESR-PN 113 (219)
Q Consensus 104 dieIiE~H-h~ 113 (219)
++. ++.| |+
T Consensus 199 ~~~-l~~H~Hn 208 (295)
T 1ydn_A 199 AHS-LAGHYHD 208 (295)
T ss_dssp GGG-EEEEEBC
T ss_pred CCe-EEEEECC
Confidence 433 5667 55
No 306
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=34.68 E-value=59 Score=24.69 Aligned_cols=19 Identities=16% Similarity=0.090 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHcCCcEEEe
Q 027747 36 STVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViG 55 (219)
..+.+.+..|.+.|. ++.|
T Consensus 27 ~ki~~~L~lA~kagk-lv~G 45 (135)
T 2aif_A 27 NKIINLVQQACNYKQ-LRKG 45 (135)
T ss_dssp HHHHHHHHHHHHTTC-EEES
T ss_pred HHHHHHHHHHHHcCC-cccC
Confidence 345667777777775 5554
No 307
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=34.48 E-value=59 Score=28.64 Aligned_cols=68 Identities=15% Similarity=0.022 Sum_probs=40.1
Q ss_pred EEEE-----CCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhh
Q 027747 28 VVID-----FTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH 101 (219)
Q Consensus 28 VvID-----FS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~ 101 (219)
+.|| =+.|+++...++.+ ....++|-+.++-+ ++.+-.++.+++.|++.-.+-- ++++.++.+.+.++
T Consensus 132 lsIDg~~~~T~~~eV~eaAleag-ag~~~lINsv~~~~---~~~m~~laa~~g~~vVlmh~~d--~~~~~~l~~~a~~~ 204 (323)
T 4djd_D 132 LVVVGCGDVEKDHEVLEAVAEAA-AGENLLLGNAEQEN---YKSLTAACMVHKHNIIARSPLD--INICKQLNILINEM 204 (323)
T ss_dssp EEEECCSCHHHHHHHHHHHHHHT-TTSCCEEEEEBTTB---CHHHHHHHHHHTCEEEEECSSC--HHHHHHHHHHHHTT
T ss_pred EEEECCCCCCCCHHHHHHHHHhc-CCCCCeEEECCccc---HHHHHHHHHHhCCeEEEEccch--HHHHHHHHHHHHHc
Confidence 6888 66666655555543 11246777777642 2456666667788888854322 35666666555543
No 308
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=34.44 E-value=60 Score=26.12 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=7.6
Q ss_pred ccHHHHHHHHHHhh
Q 027747 193 SLMPGLILAIRKVV 206 (219)
Q Consensus 193 ~Fa~Gal~Aa~~l~ 206 (219)
..|.|++.|++...
T Consensus 196 ~~a~g~~~al~~~g 209 (291)
T 3egc_A 196 RITEGAMQALNVLG 209 (291)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 34556666665543
No 309
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=34.40 E-value=1.1e+02 Score=27.50 Aligned_cols=72 Identities=6% Similarity=-0.050 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHH--------------------hhccCceEEEccChhHHHHHHHHH
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF--------------------CDKASMGCLIAPTLSIGSILLQQA 94 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~--------------------a~~~~~~vv~spNfSlGv~ll~~~ 94 (219)
.+......++|.+.|++++. |-|+.+..+.|.++ +.+.+.||++|.=|| .+.=+..+
T Consensus 100 ~e~~~~L~~~~~~~Gi~~~s--tpfD~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~~gKPViLStGma-Tl~Ei~~A 176 (385)
T 1vli_A 100 AEWILPLLDYCREKQVIFLS--TVCDEGSADLLQSTSPSAFKIASYEINHLPLLKYVARLNRPMIFSTAGA-EISDVHEA 176 (385)
T ss_dssp GGGHHHHHHHHHHTTCEEEC--BCCSHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHTTCSCEEEECTTC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEE--ccCCHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCeEEEECCCC-CHHHHHHH
Q ss_pred HHHHhhhc-CCeEEEe
Q 027747 95 AISASFHY-KNVEIVE 109 (219)
Q Consensus 95 ~~~aa~~~-~dieIiE 109 (219)
++.+...- .++-+.+
T Consensus 177 ve~i~~~Gn~~iiLlh 192 (385)
T 1vli_A 177 WRTIRAEGNNQIAIMH 192 (385)
T ss_dssp HHHHHTTTCCCEEEEE
T ss_pred HHHHHHCCCCcEEEEe
No 310
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=34.35 E-value=1.3e+02 Score=24.39 Aligned_cols=31 Identities=10% Similarity=-0.036 Sum_probs=18.7
Q ss_pred CCcEEEECCC-hhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFTD-ASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS~-p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=++. ++...+.++.+.+.|+|+|.-
T Consensus 58 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 89 (306)
T 2vk2_A 58 GVDAIFIAPVVATGWEPVLKEAKDAEIPVFLL 89 (306)
T ss_dssp TCSEEEECCSSSSSCHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEeCCChhhHHHHHHHHHHCCCCEEEe
Confidence 5786554433 223345667777788888764
No 311
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=34.35 E-value=1.4e+02 Score=23.86 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=22.9
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEec
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGT 56 (219)
.|+|.++. .+||+||-..... ..+..+...+.|+|+|.=.
T Consensus 50 ~n~E~i~~-----l~PDlIi~~~~~~-~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 50 LNAEGILA-----MKPTMLLVSELAQ-PSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp CCHHHHHT-----TCCSEEEEETTCS-CHHHHHHHHHTTCEEEEEC
T ss_pred CCHHHHHc-----cCCCEEEEcCCcC-chhHHHHHHHcCCcEEEeC
Confidence 47777776 4788777544321 1233444456777777543
No 312
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=34.22 E-value=53 Score=24.25 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=12.4
Q ss_pred EECCChhhH----HHHHHHHHHcCCcEEEe
Q 027747 30 IDFTDASTV----YDNVKQATAFGMRSVVY 55 (219)
Q Consensus 30 IDFS~p~~~----~~~~~~~~~~g~p~ViG 55 (219)
|+|..|+.+ .+.+..|.+.|. ++.|
T Consensus 5 v~~~~p~~l~~~i~~~L~~A~kag~-l~~G 33 (120)
T 1vq8_F 5 VDFDVPADLEDDALEALEVARDTGA-VKKG 33 (120)
T ss_dssp CCSCCCHHHHHHHHHHHHHHHHSSC-EEES
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCC-EeEC
Confidence 456666433 344555555553 4444
No 313
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=34.20 E-value=61 Score=23.22 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=23.6
Q ss_pred cccccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHH--cCCcEEEecC
Q 027747 7 IPVMSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATA--FGMRSVVYVP 57 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~--~g~p~ViGTT 57 (219)
+....+.++++....+...+| |++|...|+. -.+.++...+ ..+|+|+-|.
T Consensus 30 v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 84 (151)
T 3kcn_A 30 VTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTG 84 (151)
T ss_dssp EEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEEC
T ss_pred EEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEEC
Confidence 334556666554432222347 4567776642 1233333222 2455555444
No 314
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=34.00 E-value=1.2e+02 Score=24.94 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=22.7
Q ss_pred CCCcEEE-ECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 24 KARAVVI-DFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 24 ~~~DVvI-DFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
..+|.+| .-..++++...++.+.+.|+|+|.-
T Consensus 59 ~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~ 91 (316)
T 1tjy_A 59 QGYDAIIVSAVSPDGLCPALKRAMQRGVKILTW 91 (316)
T ss_dssp TTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEE
T ss_pred cCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEe
Confidence 3689654 3344555677788888999998864
No 315
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=33.96 E-value=72 Score=25.93 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCChh-----------hHHHHHHHhhccCceEEEcc
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQLE-----------TVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~~-----------~~~~l~~~a~~~~~~vv~sp 82 (219)
+.+...++.|.+.|.+.|+-.+|+.++ .+.++-+.+++.++.+.+=+
T Consensus 102 ~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 159 (290)
T 3tva_A 102 AEMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHLET 159 (290)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 456788899999999999988886532 12333344555566555533
No 316
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=33.89 E-value=60 Score=28.12 Aligned_cols=67 Identities=7% Similarity=0.101 Sum_probs=46.4
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh----------hhHHHHHHHhhccCce---EEEccChhHHHHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL----------ETVSALSAFCDKASMG---CLIAPTLSIGSILL 91 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~----------~~~~~l~~~a~~~~~~---vv~spNfSlGv~ll 91 (219)
.+|+|=|.|--..-.+.++.+.++|.|+|+-.+...+ +.+.+.-+.+.+.+++ +++=|.|..|-..-
T Consensus 135 Ga~iINdvsg~~~d~~m~~~aa~~g~~vVlmh~~G~p~y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gfgk~~~ 214 (297)
T 1tx2_A 135 GAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPE 214 (297)
T ss_dssp TCCEEEETTTTSSCTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHH
T ss_pred CCCEEEECCCCCCCHHHHHHHHHhCCcEEEEeCCCCCCcchHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCcCCCHH
Confidence 6898888886443457788899999999998763221 2233334456678998 99999876555443
No 317
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=33.76 E-value=1.2e+02 Score=21.00 Aligned_cols=51 Identities=4% Similarity=0.017 Sum_probs=25.8
Q ss_pred cccCHHHHHhcccCCCCCc-EEEECCChh-hHHHHHHHHHH----cCCcEEEecCCCC
Q 027747 9 VMSDLTMVLGSISQSKARA-VVIDFTDAS-TVYDNVKQATA----FGMRSVVYVPHIQ 60 (219)
Q Consensus 9 v~~~l~~~l~~~~~~~~~D-VvIDFS~p~-~~~~~~~~~~~----~g~p~ViGTTG~~ 60 (219)
...+.++++....+ ..+| |++|...|+ .-.+.++...+ ..+|+|+-|...+
T Consensus 39 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 95 (143)
T 3cnb_A 39 IAYNPFDAGDLLHT-VKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALT 95 (143)
T ss_dssp EECSHHHHHHHHHH-TCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCC
T ss_pred EECCHHHHHHHHHh-cCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCC
Confidence 34555665543222 2477 567777664 22444454444 2456655544443
No 318
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=33.62 E-value=1.5e+02 Score=22.23 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=44.1
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.++|=+.....+....+...+.|.++..-+.+.++.+...+.+.-++....++++.+.
T Consensus 36 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~ 93 (175)
T 2rb4_A 36 QAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV 93 (175)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc
Confidence 4777666677777888888888999999888998877666554444567889998874
No 319
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=33.61 E-value=46 Score=29.20 Aligned_cols=48 Identities=8% Similarity=0.158 Sum_probs=28.5
Q ss_pred EECCChhhHHHHHHHHHHcCCcEEEe-----cCC---CChhhHHHHHHHhhccCceEEE
Q 027747 30 IDFTDASTVYDNVKQATAFGMRSVVY-----VPH---IQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 30 IDFS~p~~~~~~~~~~~~~g~p~ViG-----TTG---~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
+.+..++.+.+.++ ..++.+|+. .|| ++++.++.|.++|+++++.++.
T Consensus 196 ~~~~d~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 251 (433)
T 1z7d_A 196 VPYDDLEALEEELK---DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVA 251 (433)
T ss_dssp ECTTCHHHHHHHHT---STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred eCCCCHHHHHHHhC---CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 44444444433332 234455653 456 4566788888888888877765
No 320
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=33.57 E-value=62 Score=29.00 Aligned_cols=39 Identities=13% Similarity=0.029 Sum_probs=34.0
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCC-cEEEecCCCChh
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVPHIQLE 62 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~-p~ViGTTG~~~~ 62 (219)
..+||||=|..++.+...++.+.+.|+ .+.|+|.||+..
T Consensus 242 s~a~vIi~~~~~~~~~~l~~~~~~~g~~~~wI~s~~w~~~ 281 (479)
T 3sm9_A 242 PNARVVVLFMRSDDSRELIAAASRANASFTWVASDGWGAQ 281 (479)
T ss_dssp TTCCEEEEECCHHHHHHHHHHHHHTTCCCEEEECTTTTTC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHhCCEEEEEEechhhcC
Confidence 469999999999999999999999888 678999999763
No 321
>4pga_A Glutaminase-asparaginase; bacterial amidohydrolase; 1.70A {Pseudomonas SP} SCOP: c.88.1.1 PDB: 1djp_A* 1djo_A* 3pga_1
Probab=33.52 E-value=63 Score=28.49 Aligned_cols=63 Identities=13% Similarity=0.065 Sum_probs=47.9
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCC-cEEEecCC---CChhhHHHHHHHhhccCceEEEccCh-hHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVPH---IQLETVSALSAFCDKASMGCLIAPTL-SIGS 88 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~-p~ViGTTG---~~~~~~~~l~~~a~~~~~~vv~spNf-SlGv 88 (219)
.+.|.|=...|..-.+.++.+++.|. -+|+-++| +.++-.+.|+++.+ +++|||.++-- .-|.
T Consensus 221 ~~~V~il~~~pG~~~~~l~~~~~~g~~GiVle~~G~Gn~p~~~~~~l~~a~~-~Gi~VV~~Sr~~~~G~ 288 (337)
T 4pga_A 221 LPQVDIAYSYGNVTDTAYKALAQNGAKALIHAGTGNGSVSSRVVPALQQLRK-NGTQIIRSSHVNQGGF 288 (337)
T ss_dssp CCCEEEEECCTTCCSHHHHHHHHTTCSEEEEEEBTTTBCCTTTHHHHHHHHH-TTCEEEEEESCCSBCC
T ss_pred CCCEEEEEECCCCCHHHHHHHHhcCCCEEEEEEeCCCCCCHHHHHHHHHHHH-CCCEEEEeccCCCCCc
Confidence 46788888889888889998888765 58888887 34455678888875 78999998755 4444
No 322
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=33.46 E-value=96 Score=21.42 Aligned_cols=51 Identities=10% Similarity=0.061 Sum_probs=25.8
Q ss_pred ccCHHHHHhcccCCCCCcE-EEECCChhh-HHHHHHHHHH----cCCcEEEecCCCC
Q 027747 10 MSDLTMVLGSISQSKARAV-VIDFTDAST-VYDNVKQATA----FGMRSVVYVPHIQ 60 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DV-vIDFS~p~~-~~~~~~~~~~----~g~p~ViGTTG~~ 60 (219)
..+..+++........+|+ ++|...|+. -.+.++...+ ..+|+|+=|.--+
T Consensus 36 ~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~ 92 (129)
T 3h1g_A 36 AEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGG 92 (129)
T ss_dssp ESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCS
T ss_pred eCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCC
Confidence 4455555433222235785 448887753 2445555444 2466666554333
No 323
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=33.43 E-value=1e+02 Score=25.50 Aligned_cols=62 Identities=13% Similarity=0.065 Sum_probs=39.3
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCC-hhhHHHHHHHhhccCceEEEccC
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQ-LETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~-~~~~~~l~~~a~~~~~~vv~spN 83 (219)
+++.+++. .+|++|==|- ...+-.|+..|+|+|.--.|.. .+|....+.+.+ .+.++++.++
T Consensus 246 ~~~~~~~~------~ad~~v~~sg----~~~~~EAma~G~Pvi~~~~~g~~~~q~~~~~~~~~-~g~g~~~~~~ 308 (364)
T 1f0k_A 246 DDMAAAYA------WADVVVCRSG----ALTVSEIAAAGLPALFVPFQHKDRQQYWNALPLEK-AGAAKIIEQP 308 (364)
T ss_dssp SCHHHHHH------HCSEEEECCC----HHHHHHHHHHTCCEEECCCCCTTCHHHHHHHHHHH-TTSEEECCGG
T ss_pred hhHHHHHH------hCCEEEECCc----hHHHHHHHHhCCCEEEeeCCCCchhHHHHHHHHHh-CCcEEEeccc
Confidence 47778886 5898885553 4445678889999998765532 344433444443 4566666553
No 324
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=33.34 E-value=44 Score=30.59 Aligned_cols=52 Identities=6% Similarity=0.050 Sum_probs=38.8
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEEecCC-----------CChhhH-HHHHHHhhccCce---EEE
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVVYVPH-----------IQLETV-SALSAFCDKASMG---CLI 80 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG-----------~~~~~~-~~l~~~a~~~~~~---vv~ 80 (219)
-+...+++.+...++.|.+.+.|+++.+|- ++.+.+ ..++.++++.++| |++
T Consensus 18 afn~~n~e~i~Ail~aAee~~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP~~~VaL 84 (420)
T 2fiq_A 18 SVCSAHPLVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFARERIIL 84 (420)
T ss_dssp EECCCCHHHHHHHHHHTTTSCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCCGGGEEE
T ss_pred EeccCCHHHHHHHHHHHHHcCCCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcCcceEEE
Confidence 566789999999999999999999998753 222333 4456667777888 554
No 325
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=33.30 E-value=1.2e+02 Score=21.55 Aligned_cols=55 Identities=5% Similarity=0.021 Sum_probs=31.5
Q ss_pred cccccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHHc--CCcEEEecCCCChh
Q 027747 7 IPVMSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATAF--GMRSVVYVPHIQLE 62 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~~--g~p~ViGTTG~~~~ 62 (219)
+...++.++++....+ ..+| |++|...|+. -.+.++...+. .+|+|+-|...+.+
T Consensus 49 v~~~~~~~~al~~l~~-~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~ 107 (150)
T 4e7p_A 49 VLQAKNGQEAIQLLEK-ESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAG 107 (150)
T ss_dssp EEEESSHHHHHHHHTT-SCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHH
T ss_pred EEEECCHHHHHHHhhc-cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHH
Confidence 3446677777764422 4588 5788887653 23444444443 56776666555443
No 326
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=33.21 E-value=1.5e+02 Score=22.03 Aligned_cols=59 Identities=10% Similarity=0.038 Sum_probs=44.5
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
..++|=+...+.+....+...+.|.++..=+.+.++.+...+.+.-++....++++.+.
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~ 94 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDV 94 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCh
Confidence 35777666777788888888889999998888888877665544444567889998864
No 327
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=33.13 E-value=65 Score=23.92 Aligned_cols=57 Identities=9% Similarity=0.069 Sum_probs=33.5
Q ss_pred CcE---EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhH----HHHHHHhhccCceEEEcc
Q 027747 26 RAV---VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETV----SALSAFCDKASMGCLIAP 82 (219)
Q Consensus 26 ~DV---vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~----~~l~~~a~~~~~~vv~sp 82 (219)
+|+ ++|.++.+.....+....+.++|+++-.+-.+.... ..+++++++.+.+++..+
T Consensus 86 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~S 149 (188)
T 2wjg_A 86 PDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLS 149 (188)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECB
T ss_pred CCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEE
Confidence 664 567777666666677777788888777665543211 123445544455655444
No 328
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=33.01 E-value=73 Score=26.44 Aligned_cols=52 Identities=13% Similarity=0.048 Sum_probs=32.1
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChh--hHHHHHH---HHHHcCCcEEEecCCCChhhH
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDAS--TVYDNVK---QATAFGMRSVVYVPHIQLETV 64 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~--~~~~~~~---~~~~~g~p~ViGTTG~~~~~~ 64 (219)
+..+.++++++. .+|+||.-.-+. .....++ ..+..+.-++.-|++++..++
T Consensus 73 i~~~~~~~~~~~------~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~l 129 (283)
T 4e12_A 73 IRYSDDLAQAVK------DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDL 129 (283)
T ss_dssp CEEESCHHHHTT------TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHH
T ss_pred eEEeCCHHHHhc------cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHH
Confidence 345678888775 699999876543 3333333 333445555657888876543
No 329
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}
Probab=33.00 E-value=27 Score=32.57 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=44.8
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCC--CC---h------------hhHHHHHHHhhc-cCceEEEccChhHH
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH--IQ---L------------ETVSALSAFCDK-ASMGCLIAPTLSIG 87 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG--~~---~------------~~~~~l~~~a~~-~~~~vv~spNfSlG 87 (219)
.|+||+-+.|-.....++.|++.|+..+- |+. |+ . +-...+.+.+++ ++ -.|...=|.-|
T Consensus 84 ~DvVIN~s~~~~~l~Im~acleaGv~YlD-Ta~E~~~p~~~~~~~~p~~~~~Y~~~~~~~~~~~~~~G-tAilg~G~nPG 161 (480)
T 2ph5_A 84 NDFLIDVSIGISSLALIILCNQKGALYIN-AATEPWKEEFVMEKMALNRRTNYSLREEVLRLKDKTQK-TALITHGANPG 161 (480)
T ss_dssp TCEEEECCSSSCHHHHHHHHHHHTCEEEE-SSCCCCCC----------CCCHHHHHHHHHTTTTTCCS-CEECSCBTTTB
T ss_pred CCEEEECCccccCHHHHHHHHHcCCCEEE-CCCCcccccccccccCcchhhhHHHHHHHHHHHHhcCC-cEEecCCCCcc
Confidence 59999999999999999999999999885 442 11 1 111345555433 55 66777777777
Q ss_pred HHHH
Q 027747 88 SILL 91 (219)
Q Consensus 88 v~ll 91 (219)
+...
T Consensus 162 vvsv 165 (480)
T 2ph5_A 162 LVSH 165 (480)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 330
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=32.93 E-value=65 Score=26.48 Aligned_cols=41 Identities=2% Similarity=-0.185 Sum_probs=32.3
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCC--cEEEecCCCChhhHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGM--RSVVYVPHIQLETVSA 66 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~--p~ViGTTG~~~~~~~~ 66 (219)
++|+|+=++....+...++.+.+.|+ |+ +++.||+..++..
T Consensus 190 ~~dav~~~~~~~~a~~~~~~~~~~g~~~p~-i~~~g~~~~~~~~ 232 (362)
T 3snr_A 190 NPDAILVGASGTAAALPQTTLRERGYNGLI-YQTHGAASMDFIR 232 (362)
T ss_dssp CCSEEEEECCHHHHHHHHHHHHHTTCCSEE-EECGGGCSHHHHH
T ss_pred CCCEEEEecCcchHHHHHHHHHHcCCCccE-EeccCcCcHHHHH
Confidence 68999888878888888999988876 44 8888998755433
No 331
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=32.91 E-value=65 Score=25.85 Aligned_cols=50 Identities=8% Similarity=0.054 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHcCCcEEEec--CCCChhhHHHHHHHhhccCceE----EEccChhHHHH
Q 027747 37 TVYDNVKQATAFGMRSVVYV--PHIQLETVSALSAFCDKASMGC----LIAPTLSIGSI 89 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGT--TG~~~~~~~~l~~~a~~~~~~v----v~spNfSlGv~ 89 (219)
.+.+.++.+.+.|+++|+.| +|-+...+ ....++.++++ ++++|.+....
T Consensus 25 ~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~---~~~l~~lg~~~~~~~ii~~~~~~~~~ 80 (264)
T 3epr_A 25 AGERFIERLQEKGIPYMLVTNNTTRTPESV---QEMLRGFNVETPLETIYTATMATVDY 80 (264)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCSSCHHHH---HHHHHTTTCCCCGGGEEEHHHHHHHH
T ss_pred CHHHHHHHHHHCCCeEEEEeCCCCCCHHHH---HHHHHHCCCCCChhheecHHHHHHHH
Confidence 56788999999999999998 47776543 22222233332 56666665443
No 332
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=32.71 E-value=1.2e+02 Score=21.01 Aligned_cols=77 Identities=9% Similarity=0.064 Sum_probs=44.2
Q ss_pred ccccccCHHHHHhcccCCCCCc-EEEECCChh---hHHHHHHHHHHc--CCcEEEecCCCChhhHHHHHHHhhccCceEE
Q 027747 6 EIPVMSDLTMVLGSISQSKARA-VVIDFTDAS---TVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCL 79 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~---~~~~~~~~~~~~--g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv 79 (219)
.+....+.++++....+ ..+| |++|...|+ .-.+.++...+. .+|+|+-|.--+.+. ..++. +.+.--+
T Consensus 32 ~v~~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~---~~~~~-~~ga~~~ 106 (136)
T 3kto_A 32 TIQCFASAESFMRQQIS-DDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPT---AVRAM-RASAADF 106 (136)
T ss_dssp EEEEESSHHHHTTSCCC-TTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHH---HHHHH-HTTCSEE
T ss_pred EEEEeCCHHHHHHHHhc-cCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHH---HHHHH-HcChHHh
Confidence 34456788888875433 4589 689999888 345666665554 577777665444432 22221 1344444
Q ss_pred EccChhHH
Q 027747 80 IAPTLSIG 87 (219)
Q Consensus 80 ~spNfSlG 87 (219)
+.-.++..
T Consensus 107 l~KP~~~~ 114 (136)
T 3kto_A 107 IEKPFIEH 114 (136)
T ss_dssp EESSBCHH
T ss_pred eeCCCCHH
Confidence 44446554
No 333
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=32.69 E-value=1.5e+02 Score=23.46 Aligned_cols=53 Identities=15% Similarity=0.117 Sum_probs=42.9
Q ss_pred EEEECCChhhHHHHHHHHHHcCC-cEEEec-CCCChhhHHHHHHHhhccCceEEE
Q 027747 28 VVIDFTDASTVYDNVKQATAFGM-RSVVYV-PHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~-p~ViGT-TG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
++|.-..+..+...++.|++.|. ..|++- ..++..+..+|.-+|++.+...++
T Consensus 103 l~v~~~~~~daLwa~EqALrsG~~~aVl~Wl~~l~~~~~RRLqlAAe~g~~~~fl 157 (161)
T 1oft_A 103 LLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQLSRAAQLGQAQSLN 157 (161)
T ss_dssp EEECCSSTTHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCChHHHHHHHHHHHhcCCccEEEECCCcCChHHHHHHHHHHHhCCCeEEE
Confidence 67888899899999999999965 899984 468888888999888776665543
No 334
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=32.45 E-value=57 Score=26.13 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=43.4
Q ss_pred CCCcEEEECCChhh---HHHHH-HHHHHcCCcEEEecCCCChhh-H-HHHHHHhhccCce-EEEccChhHHHHHHHHHHH
Q 027747 24 KARAVVIDFTDAST---VYDNV-KQATAFGMRSVVYVPHIQLET-V-SALSAFCDKASMG-CLIAPTLSIGSILLQQAAI 96 (219)
Q Consensus 24 ~~~DVvIDFS~p~~---~~~~~-~~~~~~g~p~ViGTTG~~~~~-~-~~l~~~a~~~~~~-vv~spNfSlGv~ll~~~~~ 96 (219)
...||.|-|+..+. ..+++ ....+.|+.+-+---.+...+ + +.|.++.++.++. +|+|+||.-.-.-+.++.+
T Consensus 7 ~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~ 86 (176)
T 3jrn_A 7 TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVT 86 (176)
T ss_dssp CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHH
T ss_pred CCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHH
Confidence 36899999998874 44444 444556777665433333222 1 2455555444444 6799999988888887776
Q ss_pred HH
Q 027747 97 SA 98 (219)
Q Consensus 97 ~a 98 (219)
..
T Consensus 87 i~ 88 (176)
T 3jrn_A 87 IM 88 (176)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 335
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=32.42 E-value=57 Score=27.32 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=37.7
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChh-hHHHHH---H---HHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDAS-TVYDNV---K---QATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~-~~~~~~---~---~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
.+++++++. .+|+||-...+. .+...+ + ..++.+.-+|..+| ..+.....+.+...+.++..+-+|
T Consensus 55 ~~~~~e~~~------~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st-~~~~~~~~~~~~~~~~g~~~~~~p 127 (303)
T 3g0o_A 55 AASAREFAG------VVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSST-ISSADAQEIAAALTALNLNMLDAP 127 (303)
T ss_dssp ESSSTTTTT------TCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSC-CCHHHHHHHHHHHHTTTCEEEECC
T ss_pred cCCHHHHHh------cCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCC-CCHHHHHHHHHHHHHcCCeEEeCC
Confidence 566667664 689888665543 444443 2 12234444554444 556666667666655666655555
Q ss_pred C
Q 027747 83 T 83 (219)
Q Consensus 83 N 83 (219)
-
T Consensus 128 v 128 (303)
T 3g0o_A 128 V 128 (303)
T ss_dssp E
T ss_pred C
Confidence 3
No 336
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=32.23 E-value=18 Score=29.13 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=23.3
Q ss_pred CCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 49 GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 49 g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
...+|+..||+++++.+.|.+++++.+. .++.++
T Consensus 5 ~~~~~i~~sg~~~~~~~~l~~~~~~~G~--~~~~~~ 38 (229)
T 1l0b_A 5 ERDISMVVSGLTPKEVMIVQKFAEKYRL--ALTDVI 38 (229)
T ss_dssp CCCCEEEEESCCHHHHHHHHHHHHHTTC--EECSSC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHHcCC--EEeCCc
Confidence 3467777889998888888888765443 444444
No 337
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=31.91 E-value=1e+02 Score=23.16 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHcCCcEEEecCCCCh-hhHHHHHHHhhccCceEEEccC
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHIQL-ETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~~~-~~~~~l~~~a~~~~~~vv~spN 83 (219)
...+.++...+....+|+=..--++ +-...|..+|+++++|+++.++
T Consensus 28 G~~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~s 75 (126)
T 2xzm_U 28 GLHEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPK 75 (126)
T ss_dssp SHHHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESC
T ss_pred cHHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECC
Confidence 4455555555566667766666654 3446677777777777776554
No 338
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=31.90 E-value=37 Score=24.23 Aligned_cols=51 Identities=16% Similarity=0.015 Sum_probs=32.5
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcE-EEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~-ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
..+..+..-. .....++++.+.+.-+ |+|+.|.+ .-+...++...||++.|
T Consensus 87 ~~~~~~~~g~--~~~~I~~~a~~~~~dliV~G~~g~s-----v~~~vl~~a~~PVlvv~ 138 (138)
T 1q77_A 87 IPGVEYRIGP--LSEEVKKFVEGKGYELVVWACYPSA-----YLCKVIDGLNLASLIVK 138 (138)
T ss_dssp CCCEEEECSC--HHHHHHHHHTTSCCSEEEECSCCGG-----GTHHHHHHSSSEEEECC
T ss_pred cceEEEEcCC--HHHHHHHHHHhcCCCEEEEeCCCCc-----hHHHHHHhCCCceEeeC
Confidence 3566665554 3467778888878766 67988872 22333444568988764
No 339
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=31.86 E-value=92 Score=24.80 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=18.1
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=+. .++.+.+.++.+.+.|+|+|.-
T Consensus 65 ~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~ 96 (289)
T 3brs_A 65 KPDVILLAAADYEKTYDAAKEIKDAGIKLIVI 96 (289)
T ss_dssp CCSEEEECCSCTTTTHHHHTTTGGGTCEEEEE
T ss_pred CCCEEEEeCCChHHhHHHHHHHHHCCCcEEEE
Confidence 577555443 3333345566666778887653
No 340
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=31.82 E-value=53 Score=24.42 Aligned_cols=10 Identities=0% Similarity=-0.260 Sum_probs=4.1
Q ss_pred HHHHHcCCcE
Q 027747 43 KQATAFGMRS 52 (219)
Q Consensus 43 ~~~~~~g~p~ 52 (219)
.+|.++++|+
T Consensus 65 ~lc~~~~Vp~ 74 (124)
T 2fc3_A 65 LLCDEKKIPY 74 (124)
T ss_dssp HHHHHTTCCE
T ss_pred HHHHHcCCCE
Confidence 3344444443
No 341
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=31.80 E-value=1.8e+02 Score=22.53 Aligned_cols=58 Identities=14% Similarity=0.013 Sum_probs=41.9
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
..++|=+.....+....+...+.|.++..=..+.++++.+.+.+.-++....++++.+
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 4577766667777777777778899998888888887765544333346788898875
No 342
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=31.62 E-value=85 Score=23.94 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=30.6
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHH----cCCcEEEecCCCC-hh-h-HHHHHHHhhccCceEEEccC
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATA----FGMRSVVYVPHIQ-LE-T-VSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~----~g~p~ViGTTG~~-~~-~-~~~l~~~a~~~~~~vv~spN 83 (219)
.+.|++||. +|+++...++.+.+ .++-+|.|--|++ .+ + ...+.++......-+++.|+
T Consensus 36 g~~vi~DyaHnP~si~a~l~al~~~~~~~riivvf~~g~~s~r~k~~~~~~~~~~~~aD~vi~~~~~ 102 (163)
T 3mvn_A 36 NITVYDDFAHHPTAITATIDALRAKVGQQRILAVLEPRSNTMKMGVHKHELATSLQDADSVFIYQPP 102 (163)
T ss_dssp TEEEEEECCCSHHHHHHHHHHHHHHHTTSCEEEEECCC---------CHHHHHHHTTCSEEEEECC-
T ss_pred CcEEEEcCCCCHHHHHHHHHHHHHhcCCCcEEEEECCCCcchhhHHHHHHHHHHHhcCCEEEEECCC
Confidence 467999985 68877777776654 2344555554554 22 1 24454444334445556554
No 343
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Probab=31.51 E-value=59 Score=27.29 Aligned_cols=34 Identities=24% Similarity=0.160 Sum_probs=26.8
Q ss_pred EEEEC-----CChhhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 28 VVIDF-----TDASTVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 28 VvIDF-----S~p~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
++++| ++++.+.+.++++.++|+|+++|=.|...
T Consensus 195 ~v~s~H~Y~~~~~~~~~~~~~~~~~~g~P~~igEfG~~~ 233 (303)
T 7a3h_A 195 VMYAFHFYAGTHGQNLRDQVDYALDQGAAIFVSEWGTSA 233 (303)
T ss_dssp EEEEEEEETTSCCHHHHHHHHHHHHTTCCEEEEEEESSC
T ss_pred EEEEEEecCCCchHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 56665 45677888899999999999999777653
No 344
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=31.44 E-value=70 Score=26.19 Aligned_cols=39 Identities=10% Similarity=0.001 Sum_probs=29.7
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCc-EEEecCCCChhh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLET 63 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p-~ViGTTG~~~~~ 63 (219)
.+|+|+=++.+..+...++.+.+.|+. .++|+.||...+
T Consensus 193 ~~d~i~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~ 232 (346)
T 1usg_A 193 NIDFVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNAS 232 (346)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHTTCCCEEEECGGGCCTT
T ss_pred CCCEEEEcCcchHHHHHHHHHHHcCCCCeEEecCCCCcHH
Confidence 689988888766677888888888753 377888887654
No 345
>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*
Probab=31.43 E-value=45 Score=27.55 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=28.5
Q ss_pred CCcEEEecCCCChhhHHHHHHHhhccCceEEEccChh
Q 027747 49 GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 49 g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
+..+||.+|+- .+....+.+++.+.++|++.+....
T Consensus 121 ~~DvVi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 156 (249)
T 1jw9_B 121 EHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVSGAAIR 156 (249)
T ss_dssp TSSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred CCCEEEEeCCC-HHHHHHHHHHHHHcCCCEEEeeecc
Confidence 68999999974 5566778888888999999976553
No 346
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=31.43 E-value=1.3e+02 Score=23.95 Aligned_cols=33 Identities=6% Similarity=-0.099 Sum_probs=18.1
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
..+|.+|=+... ...+.++.+.+.|+|+|.=-+
T Consensus 68 ~~vdgiIi~~~~-~~~~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 68 RQIGGIILLYSR-ENDRIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp TCCCEEEESCCB-TTCHHHHHHHHTTCCEEEESC
T ss_pred CCCCEEEEeCCC-CChHHHHHHHHCCCCEEEECC
Confidence 357755533221 123566677777888776433
No 347
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=31.40 E-value=54 Score=26.46 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCCh--hhHHHHHHHhhccCceEEE
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQL--ETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~--~~~~~l~~~a~~~~~~vv~ 80 (219)
+.+...++.|.+.|.+.|+..+|... ..+..+.+++++.++.+.+
T Consensus 84 ~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~l~~l~~~a~~~Gv~l~l 130 (264)
T 1yx1_A 84 PELEPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLARHGLQLLV 130 (264)
T ss_dssp TTHHHHHHHHHHTTCSEEEEEEECCCSSCCHHHHHHHHTTSSCEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHHHHHhcCCEEEE
Confidence 55667777777777777665554321 2456666666666666665
No 348
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=31.32 E-value=1.1e+02 Score=24.76 Aligned_cols=56 Identities=7% Similarity=-0.004 Sum_probs=34.7
Q ss_pred CCcEEEECCChhhHHHHHHHHHH-----cCCcEEEecCCCChhhHHHHHHHhhccCce-EEEccChhHHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATA-----FGMRSVVYVPHIQLETVSALSAFCDKASMG-CLIAPTLSIGSI 89 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~-----~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~-vv~spNfSlGv~ 89 (219)
.+|+|+ ||+|+.+...++.+-+ .++++++ ..+ ...+.+++.+.. ++++...+....
T Consensus 185 ~~d~v~-ftS~s~v~~~~~~~~~~~~~l~~~~~~a----IG~----~Ta~~l~~~G~~~~~~a~~~~~~~l 246 (254)
T 4es6_A 185 RLNGLV-VSSGQGLQNLYQLAAADWPEIGRLPLFV----PSP----RVAEMARELGAQRVIDCRGASAPAL 246 (254)
T ss_dssp TCCEEE-CCSHHHHHHHHHHHGGGHHHHTTSCEEE----SSH----HHHHHHHHTTCSSEEECSSSSHHHH
T ss_pred CCCEEE-EcCHHHHHHHHHHhhHHHHHHhCCeEEE----ECH----HHHHHHHHcCCCceEECCCCCHHHH
Confidence 689777 9999999888877633 2444443 223 334444445554 455888887653
No 349
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=31.02 E-value=51 Score=27.18 Aligned_cols=71 Identities=7% Similarity=0.027 Sum_probs=46.2
Q ss_pred CCc---EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhH----HHHHHHhhccCceEEEc-cChhHHHHHHHHHH
Q 027747 25 ARA---VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETV----SALSAFCDKASMGCLIA-PTLSIGSILLQQAA 95 (219)
Q Consensus 25 ~~D---VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~----~~l~~~a~~~~~~vv~s-pNfSlGv~ll~~~~ 95 (219)
.+| +|+|-|+++..........+.++|+|+.-+=.+..+. ..+++++++.++|++-. +.-..|+.-+...+
T Consensus 83 ~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i 161 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKI 161 (258)
T ss_dssp CCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHH
T ss_pred CCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHH
Confidence 578 4678888888777888888899999887654433211 12455666677887754 44556776554433
No 350
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=30.98 E-value=92 Score=24.76 Aligned_cols=18 Identities=6% Similarity=0.109 Sum_probs=9.4
Q ss_pred hhHHHHHHHHHHcCCcEE
Q 027747 36 STVYDNVKQATAFGMRSV 53 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~V 53 (219)
....+..+.+.++|+.++
T Consensus 46 ~~~~~~~~~l~~~gl~~~ 63 (278)
T 1i60_A 46 HSLDDLAEYFQTHHIKPL 63 (278)
T ss_dssp SCHHHHHHHHHTSSCEEE
T ss_pred CCHHHHHHHHHHcCCCee
Confidence 444445555555555554
No 351
>3cin_A MYO-inositol-1-phosphate synthase-related protein; structura genomics, joint center for structural genomics, JCSG; HET: NAD; 1.70A {Thermotoga maritima MSB8}
Probab=30.90 E-value=69 Score=29.06 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=35.9
Q ss_pred HcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHH
Q 027747 47 AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAA 95 (219)
Q Consensus 47 ~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~ 95 (219)
+.|+|+|=||.=+... ...+.++++++++|++=-= |-.|..+|...+
T Consensus 186 ~aG~~fvN~~P~~ia~-~P~~~ela~~~gvpi~GdD-~ktG~T~~k~~L 232 (394)
T 3cin_A 186 RGGAAFVNVIPTFIAN-DPAFVELAKENNLVVFGDD-GATGATPFTADV 232 (394)
T ss_dssp HTCEEEEECSSSCSTT-CHHHHHHHHHTTEEEECSS-BSCSHHHHHHHH
T ss_pred hcCCceecCCCccccC-cHHHHHHHHHcCCcEeccc-ccccchhHHHHH
Confidence 7899999999877643 2568888888999876544 888988876543
No 352
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=30.78 E-value=47 Score=26.82 Aligned_cols=50 Identities=8% Similarity=0.143 Sum_probs=24.1
Q ss_pred CcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCCh--hhH-HHHHHHhhccCceEEE
Q 027747 26 RAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL--ETV-SALSAFCDKASMGCLI 80 (219)
Q Consensus 26 ~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~--~~~-~~l~~~a~~~~~~vv~ 80 (219)
.|+ +|-+. ... ....|+++. -=|||-.|... ..+ ..+-++|.++++.+=+
T Consensus 76 ~di~~v~~~---~~~-~n~~a~~~~-vDII~Hp~~~~~~~~~~~~~a~~A~e~gv~lEI 129 (212)
T 1v77_A 76 SYLIYVESN---DLR-VIRYSIEKG-VDAIISPWVNRKDPGIDHVLAKLMVKKNVALGF 129 (212)
T ss_dssp SSEEEEECS---CHH-HHHHHHHTT-CSEEECTTTTSSSCSCCHHHHHHHHHHTCEEEE
T ss_pred cEEEEEEeC---CHH-HHHHHHhCC-CCEEecccccccCCCCCHHHHHHHHHCCeEEEE
Confidence 784 34333 223 333466664 44667777541 111 2444555556665444
No 353
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=30.75 E-value=55 Score=24.27 Aligned_cols=12 Identities=8% Similarity=-0.139 Sum_probs=4.9
Q ss_pred HHHHHHHcCCcE
Q 027747 41 NVKQATAFGMRS 52 (219)
Q Consensus 41 ~~~~~~~~g~p~ 52 (219)
...+|.++++|+
T Consensus 64 l~~lc~~~~VP~ 75 (120)
T 1xbi_A 64 LPYLCEEKGIPY 75 (120)
T ss_dssp HHHHHHHHTCCE
T ss_pred HHHHHHhcCCCE
Confidence 333344444443
No 354
>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A
Probab=30.56 E-value=42 Score=27.83 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=27.9
Q ss_pred CCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 49 GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 49 g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
+..+|+.+|. +.+....|.+++.+.++|++.+...
T Consensus 118 ~~DvVi~~~d-~~~~r~~l~~~~~~~~~p~i~~~~~ 152 (251)
T 1zud_1 118 RADVVLDCTD-NMATRQEINAACVALNTPLITASAV 152 (251)
T ss_dssp HCSEEEECCS-SHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred cCCEEEECCC-CHHHHHHHHHHHHHhCCCEEEEecc
Confidence 5789998887 4556678899998899999987654
No 355
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=30.51 E-value=85 Score=25.26 Aligned_cols=44 Identities=5% Similarity=-0.115 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCcEEEecCCC---Chh-------hHHHHHHHhhccCceEEEcc
Q 027747 39 YDNVKQATAFGMRSVVYVPHI---QLE-------TVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~---~~~-------~~~~l~~~a~~~~~~vv~sp 82 (219)
...++.|.++|+.+=|-++++ +.. ....+-+++++.++|+++++
T Consensus 114 ~~~a~~A~e~gv~lEIn~s~~~~~~~~~R~~~~~~~~~il~l~k~~g~~ivisS 167 (212)
T 1v77_A 114 HVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTS 167 (212)
T ss_dssp HHHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHHHCCeEEEEECcHHhcCCcchHHHHHHHHHHHHHHHHhcCCCEEEeC
Confidence 467777777777777777664 111 11245566777777777776
No 356
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=30.49 E-value=40 Score=27.61 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=57.7
Q ss_pred EEEECCChhhHHHHHHHHHHcCCcEEEe---cC----C----CChhh----------HHHHHHHhhccCceEEEccChhH
Q 027747 28 VVIDFTDASTVYDNVKQATAFGMRSVVY---VP----H----IQLET----------VSALSAFCDKASMGCLIAPTLSI 86 (219)
Q Consensus 28 VvIDFS~p~~~~~~~~~~~~~g~p~ViG---TT----G----~~~~~----------~~~l~~~a~~~~~~vv~spNfSl 86 (219)
+.||+-.--+..+....=.-.++|+|++ .+ | -|.+- ..+.+++| .+ -+++.+||..
T Consensus 9 ~hiD~d~FyasvE~~~~p~L~~~Pv~V~~~~~~~~~~g~V~a~s~~Ar~~GV~~gm~~~~A~~lc--P~-l~v~~~~~~~ 85 (221)
T 1im4_A 9 IFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIA--PS-AIYVPMRKPI 85 (221)
T ss_dssp EEEEETTHHHHHHHHHSGGGTTSCEEEEEEC----CCEEEEEECHHHHTTTCCTTCBHHHHHHHC--TT-SEEEECCHHH
T ss_pred EEEecCcHHHHHHHHHCccccCCcEEEEecCCcCCCCCEEEECCHHHHHcCCCCCCcHHHHHHHC--CC-eEEECCCHHH
Confidence 3567666555555555444567888887 21 1 11111 12233344 22 3789999999
Q ss_pred HHHHHHHHHHHHhhhcCCeEEEecCCC--CCC-C---CcHHHHHHHHHHHh
Q 027747 87 GSILLQQAAISASFHYKNVEIVESRPN--ARD-F---PSPDATQIANNLSN 131 (219)
Q Consensus 87 Gv~ll~~~~~~aa~~~~dieIiE~Hh~--K~D-a---PSGTA~~la~~i~~ 131 (219)
=..+..++...+.++-|.+|+.-.--- -.. . --|++..+++.|.+
T Consensus 86 Y~~~s~~i~~~l~~~tp~ve~~siDE~~lDvt~~~~~l~~~~~~la~~ir~ 136 (221)
T 1im4_A 86 YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQ 136 (221)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCceEEecCCeEEEEecchhhhccCCHHHHHHHHHH
Confidence 999999999888887677775443210 000 1 12566666766654
No 357
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=30.39 E-value=72 Score=29.74 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=37.9
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
.++.+.+.++...+.+.|+|+.=-|-..+..+.|.+++++.++|++-.+
T Consensus 229 ~~~~i~~~~~~l~~A~rPvIl~G~g~~~~a~~~l~~lae~~~~PV~~t~ 277 (604)
T 2x7j_A 229 DRESLSDVAEMLAEAEKGMIVCGELHSDADKENIIALSKALQYPILADP 277 (604)
T ss_dssp CTGGGHHHHHHHHHCSSEEEEECCCCCHHHHHHHHHHHHHHTCCEEECG
T ss_pred ChhhHHHHHHHHhhcCCeEEEECCCCcHHHHHHHHHHHHhcCceEEEcc
Confidence 3456677777777888999887666644446789999999999999875
No 358
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=30.36 E-value=42 Score=27.20 Aligned_cols=64 Identities=8% Similarity=-0.044 Sum_probs=37.0
Q ss_pred cCHHHHHhcccCCCCCcEEE------ECCChhhHHHHHHHH--------HHcCCcEEEecCCCCh--hhHHHHHHHhhcc
Q 027747 11 SDLTMVLGSISQSKARAVVI------DFTDASTVYDNVKQA--------TAFGMRSVVYVPHIQL--ETVSALSAFCDKA 74 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvI------DFS~p~~~~~~~~~~--------~~~g~p~ViGTTG~~~--~~~~~l~~~a~~~ 74 (219)
++++++++++ ..+|+|| .|+-|..+...++.. ++.+.-++++|+|+.. .....|+......
T Consensus 68 ~~~~~~~~~l---~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g~~~~~~~l~~~l~~~ 144 (242)
T 1sqs_A 68 DDGGVIKKEL---LESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNGSDNVSEYLRDIFSYM 144 (242)
T ss_dssp STHHHHHHHH---HHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHH---HHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCCchhhHHHHHHHHHHHC
Confidence 5555555432 2589766 456677777777765 2334445667777643 3456677665444
Q ss_pred Cce
Q 027747 75 SMG 77 (219)
Q Consensus 75 ~~~ 77 (219)
+..
T Consensus 145 G~~ 147 (242)
T 1sqs_A 145 GGQ 147 (242)
T ss_dssp TCE
T ss_pred CCe
Confidence 443
No 359
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=30.29 E-value=1.7e+02 Score=24.08 Aligned_cols=18 Identities=0% Similarity=0.052 Sum_probs=8.6
Q ss_pred HHHHHHHHHcCCcEEEec
Q 027747 39 YDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGT 56 (219)
.+.++.+.+.++.-||-.
T Consensus 109 ~~~~~~l~~~~vdgiIi~ 126 (338)
T 3dbi_A 109 RQAIQYLLDLRCDAIMIY 126 (338)
T ss_dssp HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhCCCCEEEEe
Confidence 334455555555544443
No 360
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=30.01 E-value=1.2e+02 Score=24.63 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHcCCcEEEecCCC
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHI 59 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~ 59 (219)
.+...++.|.+.|.+.|+..+|+
T Consensus 105 ~~~~~i~~a~~lGa~~v~~~~g~ 127 (287)
T 3kws_A 105 TMKEIIAAAGELGSTGVIIVPAF 127 (287)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCC
T ss_pred HHHHHHHHHHHcCCCEEEEecCc
Confidence 45566777777777777665553
No 361
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=29.96 E-value=57 Score=28.55 Aligned_cols=55 Identities=7% Similarity=0.055 Sum_probs=39.0
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCChh-----hH-HHHHHHhhccCceEEE
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLE-----TV-SALSAFCDKASMGCLI 80 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~-----~~-~~l~~~a~~~~~~vv~ 80 (219)
.+-| .+++.+-+.+...++.|.+.+.|+++.++-.... .+ ..++.+++ .++||++
T Consensus 16 ~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~-~~VPVal 77 (305)
T 1rvg_A 16 GYGVGAFNVNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE-ARVPVAV 77 (305)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH-CSSCEEE
T ss_pred CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh-CCCcEEE
Confidence 3444 7889999999999999999999999988733211 11 23445555 7788876
No 362
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=29.93 E-value=2.6e+02 Score=24.75 Aligned_cols=100 Identities=8% Similarity=-0.056 Sum_probs=55.2
Q ss_pred CCcEEE--ECCChhhHHHHHH----HHHHcCC-cEEEecCCCChhhHHHHHHHhhccCceEE--------------EccC
Q 027747 25 ARAVVI--DFTDASTVYDNVK----QATAFGM-RSVVYVPHIQLETVSALSAFCDKASMGCL--------------IAPT 83 (219)
Q Consensus 25 ~~DVvI--DFS~p~~~~~~~~----~~~~~g~-p~ViGTTG~~~~~~~~l~~~a~~~~~~vv--------------~spN 83 (219)
+.|.|+ +|+..-...+.++ ...+.|+ .+|+|+ +-+. ++..+.+..+ .+..+. +.-+
T Consensus 113 GvD~vielpF~~~~s~~~Fv~~~v~ll~~l~~~~iv~G~-~~~~-~~~~~~~~i~-~~~~~~~kp~~~~g~ey~~~~~~~ 189 (357)
T 3gmi_A 113 GADIVVEGPPMGIMGSGQYMRCLIKMFYSLGAEIIPRGY-IPEK-TMEKVIDCIN-KGYHIQVKPYKIICIETGEILGEK 189 (357)
T ss_dssp TCSEEEECCCGGGSCHHHHHHHHHHHHHHHTCCEEEEEE-CCCH-HHHHHHHHHH-TTCCEEEETTEEEETTTCCEEESC
T ss_pred CCCEEEEcCchhhCCHHHHHHHHHHHHHHcCCCEEEECC-CCch-hHHHHHHHHh-cccccccccchhccCcHHHHHHHh
Confidence 689655 6642222222232 3445565 678899 3333 3555554433 222232 2345
Q ss_pred hhHHHHHHHHHHHHHhhhc-----CCeEEEecCCCCCCCCcHHHHHHHHHHHh
Q 027747 84 LSIGSILLQQAAISASFHY-----KNVEIVESRPNARDFPSPDATQIANNLSN 131 (219)
Q Consensus 84 fSlGv~ll~~~~~~aa~~~-----~dieIiE~Hh~K~DaPSGTA~~la~~i~~ 131 (219)
++++-+++.+.++...++- |.++.++.-... .-|||+++ +.+.+
T Consensus 190 l~~pn~il~~y~kai~~~~~~~~~~~i~~~~i~R~~--~~SAS~IR--~~i~~ 238 (357)
T 3gmi_A 190 LNIDNYVIASMSQMIYKLNREGLKFNPKFVFVKRLE--GISGTKIR--EAIFS 238 (357)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEECSC--CCCHHHHH--HHHHT
T ss_pred ccCCChHHHHHHHHHHHhCcCcCCCCCeEEEecCCC--cccHHHHH--HHHHc
Confidence 5556666666666666655 889988764323 67999655 55554
No 363
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=29.90 E-value=81 Score=27.03 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=45.6
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----------------hhHHHHHHHhhccCce---EEEccCh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----------------ETVSALSAFCDKASMG---CLIAPTL 84 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----------------~~~~~l~~~a~~~~~~---vv~spNf 84 (219)
.+|+|=|.|-- .-.+.++.+.++|.|+|+-.....+ +.+.+.-+.+.+.+++ +++=|.|
T Consensus 110 Ga~iINdvsg~-~d~~~~~~~a~~~~~vVlmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~ 188 (282)
T 1aj0_A 110 GAHIINDIRSL-SEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGF 188 (282)
T ss_dssp TCCEEEETTTT-CSTTHHHHHHHHTCCEEEECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCT
T ss_pred CCCEEEECCCC-CCHHHHHHHHHhCCeEEEEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCC
Confidence 78999999854 4456788889999999997753222 1233333445678888 8999987
Q ss_pred hHHHHHH
Q 027747 85 SIGSILL 91 (219)
Q Consensus 85 SlGv~ll 91 (219)
..|-+..
T Consensus 189 gf~k~~~ 195 (282)
T 1aj0_A 189 GFGKNLS 195 (282)
T ss_dssp TSSCCHH
T ss_pred CcccCHH
Confidence 7655444
No 364
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=29.86 E-value=56 Score=22.88 Aligned_cols=55 Identities=11% Similarity=0.198 Sum_probs=32.2
Q ss_pred ccccccCHHHHHhcccCCCCCc-EEEECCChhhH-HHHHHHHHHc--CCcEEEecCCCCh
Q 027747 6 EIPVMSDLTMVLGSISQSKARA-VVIDFTDASTV-YDNVKQATAF--GMRSVVYVPHIQL 61 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~~-~~~~~~~~~~--g~p~ViGTTG~~~ 61 (219)
.+....+.++++.... ...+| |++|+..|+.- .+.++...+. .+|+|+-|.-.+.
T Consensus 41 ~v~~~~~~~~a~~~l~-~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 99 (135)
T 3snk_A 41 DVRVSETDDFLKGPPA-DTRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTS 99 (135)
T ss_dssp EEEEECGGGGGGCCCT-TCCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCH
T ss_pred EEEEeccHHHHHHHHh-ccCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCH
Confidence 3445667777776542 34689 68899887532 2334433333 5787776554444
No 365
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=29.78 E-value=47 Score=29.23 Aligned_cols=49 Identities=6% Similarity=0.146 Sum_probs=29.4
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEE-----ecCC---CChhhHHHHHHHhhccCceEEE
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVV-----YVPH---IQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~Vi-----GTTG---~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
.+.|..++.+.+.++ ..++.+|+ |.|| ++++.++.|.++|+++++.++.
T Consensus 206 ~~~~~d~~~le~~l~---~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~ 262 (439)
T 2oat_A 206 IIPYNDLPALERALQ---DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIA 262 (439)
T ss_dssp EECSSCHHHHHHHTT---STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred EeCCCCHHHHHHHhC---CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 344544444443332 23445565 3456 4566788888888888887765
No 366
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=29.64 E-value=1.2e+02 Score=21.89 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=29.2
Q ss_pred HHHHHHHcCCcEEEecCCC-ChhhHHHHHHHhhccCceEEEccChh
Q 027747 41 NVKQATAFGMRSVVYVPHI-QLETVSALSAFCDKASMGCLIAPTLS 85 (219)
Q Consensus 41 ~~~~~~~~g~p~ViGTTG~-~~~~~~~l~~~a~~~~~~vv~spNfS 85 (219)
..+++.++++..|+-+.+. +.+...++-+.+.+.++.+.+.|+|.
T Consensus 57 l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~vP~~~ 102 (141)
T 3nkl_A 57 LERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTIPNLD 102 (141)
T ss_dssp HHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEECCCHH
T ss_pred HHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEECCCHH
Confidence 3445556677666555553 44555666666677888888888865
No 367
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}
Probab=29.61 E-value=1.1e+02 Score=24.63 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=22.0
Q ss_pred CCcEEEECCCh--------hhHHHHHHHHHHcCCcEEE
Q 027747 25 ARAVVIDFTDA--------STVYDNVKQATAFGMRSVV 54 (219)
Q Consensus 25 ~~DVvIDFS~p--------~~~~~~~~~~~~~g~p~Vi 54 (219)
.+|+||....+ ..+...++.|.+.|++-++
T Consensus 65 ~~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv 102 (289)
T 3e48_A 65 GMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHII 102 (289)
T ss_dssp TCSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEE
Confidence 68999987654 5567778888888875443
No 368
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=29.53 E-value=1.3e+02 Score=24.74 Aligned_cols=22 Identities=0% Similarity=-0.002 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHcCCcEEEecC
Q 027747 36 STVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTT 57 (219)
+.+...++.|.+.|.+.|++.+
T Consensus 107 ~~~~~~i~~A~~lG~~~v~~~~ 128 (309)
T 2hk0_A 107 AFFERTLSNVAKLDIHTIGGAL 128 (309)
T ss_dssp HHHHHHHHHHHHTTCCEEEECT
T ss_pred HHHHHHHHHHHHcCCCEEEeec
Confidence 4567888999999999999865
No 369
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=29.47 E-value=1.5e+02 Score=20.80 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=39.3
Q ss_pred CCcEEEECCCh--hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHH
Q 027747 25 ARAVVIDFTDA--STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAI 96 (219)
Q Consensus 25 ~~DVvIDFS~p--~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~ 96 (219)
.+|++|..+.. +........+.+.+.+-|+... -+....+.+++ .+...++.|....+-.+...+..
T Consensus 70 ~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~-~~~~~~~~l~~----~g~~~vi~p~~~~~~~l~~~~~~ 138 (144)
T 2hmt_A 70 NFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKA-QNYYHHKVLEK----IGADRIIHPEKDMGVKIAQSLSD 138 (144)
T ss_dssp GCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEEC-CSHHHHHHHHH----HTCSEEECHHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCchHHHHHHHHHHHHcCCCeEEEEe-CCHHHHHHHHH----cCCCEEECccHHHHHHHHHHHhh
Confidence 57888877764 3334555666677766555433 12233334443 45567888888777777665554
No 370
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=29.36 E-value=90 Score=23.65 Aligned_cols=41 Identities=10% Similarity=0.014 Sum_probs=22.5
Q ss_pred HHHHHHHcCCcEEEecCCCCh---hhHHHHHHHhhccCceEEEc
Q 027747 41 NVKQATAFGMRSVVYVPHIQL---ETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 41 ~~~~~~~~g~p~ViGTTG~~~---~~~~~l~~~a~~~~~~vv~s 81 (219)
.++.-.+..+.+||=|+.-.. .+-..|++.|-+.++|++-.
T Consensus 88 i~d~i~~g~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 88 IRKLIRDGSIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp HHHHHHTTSCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred HHHHHHCCCceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 334444566677776664321 12345666666677776643
No 371
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=29.33 E-value=1.3e+02 Score=22.45 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=37.9
Q ss_pred CCc---EEEECCChhhHHHHHHH---HHH---cCCcEEEecCCCChh-----hHHHHHHHhhccCceEEEcc-ChhHHHH
Q 027747 25 ARA---VVIDFTDASTVYDNVKQ---ATA---FGMRSVVYVPHIQLE-----TVSALSAFCDKASMGCLIAP-TLSIGSI 89 (219)
Q Consensus 25 ~~D---VvIDFS~p~~~~~~~~~---~~~---~g~p~ViGTTG~~~~-----~~~~l~~~a~~~~~~vv~sp-NfSlGv~ 89 (219)
.+| +|+|.+.++.......+ ..+ .++|+++--|=.+.. ..+.+++++++.+.+++..+ -...|+.
T Consensus 95 ~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 174 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174 (192)
T ss_dssp TCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHH
Confidence 456 47899988765544332 222 277876655544432 14567777777777766544 3334544
Q ss_pred HH
Q 027747 90 LL 91 (219)
Q Consensus 90 ll 91 (219)
-+
T Consensus 175 ~l 176 (192)
T 2fg5_A 175 EL 176 (192)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 372
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=29.31 E-value=87 Score=22.29 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=28.0
Q ss_pred ccccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHH------cCCcEEEecCCCChh
Q 027747 8 PVMSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATA------FGMRSVVYVPHIQLE 62 (219)
Q Consensus 8 ~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~------~g~p~ViGTTG~~~~ 62 (219)
....+.++++....+ ..+| |++|...|.. -.+.++...+ ..+|+|+-|+..+.+
T Consensus 42 ~~~~~~~~al~~~~~-~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~~~~ 103 (143)
T 3m6m_D 42 LCVNGAEQVLDAMAE-EDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPE 103 (143)
T ss_dssp EEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCCCHH
T ss_pred EEeCCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCCCHH
Confidence 345566665543221 3578 5778887752 2333333321 236777666555543
No 373
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=29.22 E-value=68 Score=28.59 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHH--------------------hhccCceEEEccChh
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAF--------------------CDKASMGCLIAPTLS 85 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~--------------------a~~~~~~vv~spNfS 85 (219)
..+......++|.+.|++++. |-|+.+..+.|.++ +.+.+.||++|.=||
T Consensus 76 ~~e~~~~L~~~~~~~Gi~~~s--t~fD~~svd~l~~~~v~~~KI~S~~~~N~pLL~~va~~gKPviLstGms 145 (350)
T 3g8r_A 76 QPEQMQKLVAEMKANGFKAIC--TPFDEESVDLIEAHGIEIIKIASCSFTDWPLLERIARSDKPVVASTAGA 145 (350)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE--EECSHHHHHHHHHTTCCEEEECSSSTTCHHHHHHHHTSCSCEEEECTTC
T ss_pred CHHHHHHHHHHHHHcCCcEEe--ccCCHHHHHHHHHcCCCEEEECcccccCHHHHHHHHhhCCcEEEECCCC
No 374
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=28.98 E-value=1.4e+02 Score=24.79 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=26.2
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
..|+|.++. .+||+||-.+.. -.+..+...+.|+|+|.-..
T Consensus 74 ~~n~E~i~~-----l~PDlIi~~~~~--~~~~~~~L~~~Gipvv~~~~ 114 (326)
T 3psh_A 74 SVNIESLLA-----LKPDVVFVTNYA--PSEMIKQISDVNIPVVAISL 114 (326)
T ss_dssp CBCHHHHHH-----TCCSEEEEETTC--CHHHHHHHHTTTCCEEEECS
T ss_pred CCCHHHHHc-----cCCCEEEEeCCC--ChHHHHHHHHcCCCEEEEec
Confidence 348888887 479987753321 12345555678899887654
No 375
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=28.90 E-value=1.9e+02 Score=23.64 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=48.2
Q ss_pred CCCcEEEECCChhh---HHHHH-HHHHHcCCcEEEecCCCChhh-H-HHHHHHhhccCc-eEEEccChhHHHHHHHHHHH
Q 027747 24 KARAVVIDFTDAST---VYDNV-KQATAFGMRSVVYVPHIQLET-V-SALSAFCDKASM-GCLIAPTLSIGSILLQQAAI 96 (219)
Q Consensus 24 ~~~DVvIDFS~p~~---~~~~~-~~~~~~g~p~ViGTTG~~~~~-~-~~l~~~a~~~~~-~vv~spNfSlGv~ll~~~~~ 96 (219)
...||.|-|+..+. +..++ ....+.|+.+-+---.+...+ + +.|.++.++.++ =+|+|+||.-.-.-+.+|.+
T Consensus 34 ~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~ 113 (204)
T 3ozi_A 34 VEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAE 113 (204)
T ss_dssp CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHH
T ss_pred cCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHH
Confidence 36899999999874 33444 455567888877655554322 1 234444333444 46889999988887777665
Q ss_pred HH
Q 027747 97 SA 98 (219)
Q Consensus 97 ~a 98 (219)
..
T Consensus 114 I~ 115 (204)
T 3ozi_A 114 IV 115 (204)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 376
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=28.75 E-value=75 Score=26.26 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=45.9
Q ss_pred CCcE---EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhH----HHHHHHhhccCceEEEc-cChhHHHHHHHH
Q 027747 25 ARAV---VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETV----SALSAFCDKASMGCLIA-PTLSIGSILLQQ 93 (219)
Q Consensus 25 ~~DV---vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~----~~l~~~a~~~~~~vv~s-pNfSlGv~ll~~ 93 (219)
.+|+ |+|-|+++..........+.++|+|+.-+=.+.... ..++++++..+.|++.. +--..|+.-+..
T Consensus 85 ~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~ 161 (274)
T 3i8s_A 85 DADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKL 161 (274)
T ss_dssp CCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHH
T ss_pred CCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 5784 789999888888888999999999987664443211 02445555567787654 445566665443
No 377
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=28.45 E-value=2e+02 Score=26.29 Aligned_cols=68 Identities=21% Similarity=0.049 Sum_probs=48.9
Q ss_pred Cc-EEEEC--CChhhHHHHHHHHHHc-CCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhh
Q 027747 26 RA-VVIDF--TDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFH 101 (219)
Q Consensus 26 ~D-VvIDF--S~p~~~~~~~~~~~~~-g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~ 101 (219)
+| |.|-| +.|+.+...++...+. ++|++|. ++++-++.--+++. .+-|++.|-+-. |. ..++..++++
T Consensus 128 aD~I~l~~~~~dpe~~~~~Vk~V~e~~dvPlsID---~dp~vleaale~~~-d~~pLIns~t~e---n~-~~~~~la~~y 199 (445)
T 2h9a_A 128 VNLVALKGSSQDAATFAKAVATAREVTDLPFILI---GTPEQLAAALETEG-ANNPLLYAATAD---NY-EQMVELAKKY 199 (445)
T ss_dssp CCEEEEECTTCCHHHHHHHHHHHHHHCCSCEEEE---SCHHHHHHHHHHHG-GGCCEEEEECTT---TH-HHHHHHHHHH
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEEE---CCHHHHHHHHHhcC-CCCCEEEECCHH---HH-HHHHHHHHHh
Confidence 67 45555 4799999999888875 9999999 88866544333331 357899998876 44 6777777664
No 378
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=28.20 E-value=2.5e+02 Score=23.02 Aligned_cols=49 Identities=12% Similarity=0.173 Sum_probs=38.9
Q ss_pred CcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 26 RAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 26 ~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
.|+ ..-|.+++-+.+.++.+.+.|+.+|+|.+ ...++|++.++|.++..
T Consensus 130 ~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG~~--------~~~~~A~~~Gl~~vlI~ 179 (225)
T 2pju_A 130 LRLDQRSYITEEDARGQINELKANGTEAVVGAG--------LITDLAEEAGMTGIFIY 179 (225)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCCEEEESH--------HHHHHHHHTTSEEEESS
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCCEEECCH--------HHHHHHHHcCCcEEEEC
Confidence 452 56688999999999999999999999943 23566788899977766
No 379
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=28.11 E-value=51 Score=24.30 Aligned_cols=9 Identities=0% Similarity=-0.200 Sum_probs=3.6
Q ss_pred HHHHHcCCc
Q 027747 43 KQATAFGMR 51 (219)
Q Consensus 43 ~~~~~~g~p 51 (219)
.+|.++++|
T Consensus 64 ~lc~~~~Vp 72 (119)
T 1rlg_A 64 LLCEEKNVP 72 (119)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHcCCC
Confidence 333344444
No 380
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=28.09 E-value=1.4e+02 Score=24.37 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=33.2
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHc---CCcEEEecCCCChhhHHHHHHHh
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAF---GMRSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~---g~p~ViGTTG~~~~~~~~l~~~a 71 (219)
+.++++++. .+|+||=...|....+.++..... .-.+|+=+++......+.+.++.
T Consensus 57 ~~~~~~~~~------~aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l 115 (290)
T 3b1f_A 57 TADFKVFAA------LADVIILAVPIKKTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYL 115 (290)
T ss_dssp ESCTTTTGG------GCSEEEECSCHHHHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHH
T ss_pred cCCHHHhhc------CCCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhc
Confidence 445555554 589999888888877777765543 22355533444333335566554
No 381
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=28.09 E-value=1.8e+02 Score=21.28 Aligned_cols=75 Identities=8% Similarity=0.054 Sum_probs=44.4
Q ss_pred CCc---EEEECCChhhHHHHHHH---HHH-cCCcEEEecCCCCh----hhHHHHHHHhhccCceEE-EccChhHHHHHH-
Q 027747 25 ARA---VVIDFTDASTVYDNVKQ---ATA-FGMRSVVYVPHIQL----ETVSALSAFCDKASMGCL-IAPTLSIGSILL- 91 (219)
Q Consensus 25 ~~D---VvIDFS~p~~~~~~~~~---~~~-~g~p~ViGTTG~~~----~~~~~l~~~a~~~~~~vv-~spNfSlGv~ll- 91 (219)
.+| +|+|-+.++.......+ ..+ .++|+|+--|=.+. ...+.+++++++.+++++ +|+--..|+.-+
T Consensus 116 ~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 195 (208)
T 3clv_A 116 GATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIF 195 (208)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence 467 47898998765543322 222 46787766665552 124667778877788776 455555666544
Q ss_pred HHHHHHHh
Q 027747 92 QQAAISAS 99 (219)
Q Consensus 92 ~~~~~~aa 99 (219)
..+.+.+-
T Consensus 196 ~~l~~~~~ 203 (208)
T 3clv_A 196 YMLAEEIY 203 (208)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
No 382
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=28.03 E-value=1.4e+02 Score=21.72 Aligned_cols=67 Identities=9% Similarity=0.030 Sum_probs=37.8
Q ss_pred CCc---EEEECCChhhHHHHHHH---HHH----cCCcEEEecCCCChhh-----HHHHHHHhhccCceEEEcc-ChhHHH
Q 027747 25 ARA---VVIDFTDASTVYDNVKQ---ATA----FGMRSVVYVPHIQLET-----VSALSAFCDKASMGCLIAP-TLSIGS 88 (219)
Q Consensus 25 ~~D---VvIDFS~p~~~~~~~~~---~~~----~g~p~ViGTTG~~~~~-----~~~l~~~a~~~~~~vv~sp-NfSlGv 88 (219)
.+| +|+|.+.++.......+ ... .++|+++--|=.+..+ .+.+++++++.+.+++..+ --..|+
T Consensus 93 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 172 (195)
T 3bc1_A 93 DAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNI 172 (195)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTH
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence 567 47788888776443322 222 5778776655454321 3556667666677766543 334455
Q ss_pred HHH
Q 027747 89 ILL 91 (219)
Q Consensus 89 ~ll 91 (219)
.-+
T Consensus 173 ~~l 175 (195)
T 3bc1_A 173 SHA 175 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 383
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=27.98 E-value=2.7e+02 Score=24.03 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=54.1
Q ss_pred EEEECCC-hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh---hHHHHHHHHHHHHHhhhcC
Q 027747 28 VVIDFTD-ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL---SIGSILLQQAAISASFHYK 103 (219)
Q Consensus 28 VvIDFS~-p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf---SlGv~ll~~~~~~aa~~~~ 103 (219)
+.||-+. -+...+.++.|.+.|+..+| ||--.++ .....+++.++.++++.-+ ++|++.|.+.++ + +
T Consensus 198 IaV~~GgGtsG~~~~i~~a~~~GvDt~I--TGe~~~~--~~~~~A~E~ginVI~AGHyATEt~Gv~aL~~~Le---~--~ 268 (278)
T 3rxy_A 198 IAVVHGAGTNGGYAVARAYFDHGVRTVL--YIHIAPE--EAERLRREGGGNLIVTGHIASDLVGINRYVQALE---E--R 268 (278)
T ss_dssp EEECCSSSSCCHHHHHHHHHHTTCCEEE--ESCCCHH--HHHHHHHHCSSEEEECCHHHHHHHHHHHHHHHHH---H--T
T ss_pred EEEEcCCCCCCcHHHHHHHHHcCCCEEE--EecCchH--HHHHHHHHcCCeEEEeccchHhHHHHHHHHHHHH---H--c
Confidence 6677662 23446889999999999998 6644332 3336677789999999988 588888877776 3 6
Q ss_pred CeEEEec
Q 027747 104 NVEIVES 110 (219)
Q Consensus 104 dieIiE~ 110 (219)
.+|++..
T Consensus 269 Glevi~~ 275 (278)
T 3rxy_A 269 GVEVVRM 275 (278)
T ss_dssp TCEEEEC
T ss_pred CCeeecc
Confidence 8888865
No 384
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=27.84 E-value=1.6e+02 Score=20.80 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=33.4
Q ss_pred cccccCHHHHHhcccC------CCCCc-EEEECCChh-hHHHHHHHHHHc----CCcEEEecCCCChh
Q 027747 7 IPVMSDLTMVLGSISQ------SKARA-VVIDFTDAS-TVYDNVKQATAF----GMRSVVYVPHIQLE 62 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~------~~~~D-VvIDFS~p~-~~~~~~~~~~~~----g~p~ViGTTG~~~~ 62 (219)
+....+.++++....+ ...+| |++|...|. .-.+.++...+. .+|+|+-|+..+.+
T Consensus 37 v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~ 104 (149)
T 1i3c_A 37 LIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNED 104 (149)
T ss_dssp EEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHH
T ss_pred EEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChH
Confidence 3345666676654332 13589 578998885 234555555553 57888877655543
No 385
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=27.79 E-value=1.4e+02 Score=23.60 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHcCCcEEEecCCCC
Q 027747 37 TVYDNVKQATAFGMRSVVYVPHIQ 60 (219)
Q Consensus 37 ~~~~~~~~~~~~g~p~ViGTTG~~ 60 (219)
.+...++.|.+.|.+.|+-.+|..
T Consensus 86 ~~~~~i~~a~~lG~~~v~~~~g~~ 109 (260)
T 1k77_A 86 DIDLALEYALALNCEQVHVMAGVV 109 (260)
T ss_dssp HHHHHHHHHHHTTCSEEECCCCBC
T ss_pred HHHHHHHHHHHcCCCEEEECcCCC
Confidence 567888999999999998777764
No 386
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=27.70 E-value=29 Score=20.40 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=16.7
Q ss_pred CCChhhHHHHHHHhhccCceE
Q 027747 58 HIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 58 G~~~~~~~~l~~~a~~~~~~v 78 (219)
|.+++++..|++-+++.++.+
T Consensus 11 ggtpeelkklkeeakkanirv 31 (36)
T 2ki0_A 11 GGTPEELKKLKEEAKKANIRV 31 (36)
T ss_dssp CCCHHHHHHHHHHHHHHCCCC
T ss_pred cCCHHHHHHHHHHHHhccEEE
Confidence 567899999998887777665
No 387
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=27.56 E-value=1.3e+02 Score=21.48 Aligned_cols=49 Identities=8% Similarity=-0.015 Sum_probs=24.0
Q ss_pred ccccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHH--cCCcEEEecC
Q 027747 8 PVMSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATA--FGMRSVVYVP 57 (219)
Q Consensus 8 ~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~--~g~p~ViGTT 57 (219)
....+.++++....+ ..+| |++|...|+. -.+.++...+ ..+|+|+-|.
T Consensus 42 ~~~~~~~~a~~~l~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 42 HFARDATQALQLLAS-REVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp EEESSHHHHHHHHHH-SCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred EEECCHHHHHHHHHc-CCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 345566665543222 3577 5677776642 2333333333 2456555444
No 388
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=27.54 E-value=1.1e+02 Score=26.20 Aligned_cols=49 Identities=8% Similarity=0.069 Sum_probs=35.7
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCc----EEEecCCCChh
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR----SVVYVPHIQLE 62 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p----~ViGTTG~~~~ 62 (219)
|+...+.++.+ .+||||=+..++.+...++.+.+.|.. +.+++.+|+..
T Consensus 195 d~~~~l~~i~~--~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~ 247 (435)
T 1dp4_A 195 HYPKLLRAVRR--KGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQS 247 (435)
T ss_dssp GHHHHHHHHHH--HCSEEEEESCHHHHHHHHHHHHHTTCCTTTCEEEEECTTCTT
T ss_pred hHHHHHHHHHh--hCceEEEecChHHHHHHHHHHHHcCCCCCCEEEEEEeccccc
Confidence 34444443322 589999999998888899999998874 66888888753
No 389
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=27.41 E-value=64 Score=28.46 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=40.3
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hh-HHHHHHHhhc-cCceEEE
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ET-VSALSAFCDK-ASMGCLI 80 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~-~~~l~~~a~~-~~~~vv~ 80 (219)
.+-| .+++.+-+.+...++.|.+.+.|+++.++-... +. ...++.++++ .++||++
T Consensus 17 ~yAV~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPVal 80 (323)
T 2isw_A 17 KYGVGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICI 80 (323)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEE
T ss_pred CceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 4454 889999999999999999999999998763221 11 1334555655 6788886
No 390
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=27.36 E-value=77 Score=23.62 Aligned_cols=17 Identities=12% Similarity=0.038 Sum_probs=8.2
Q ss_pred HHHHHHHHHHcCCcEEEe
Q 027747 38 VYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViG 55 (219)
+.+.+..|.+.|. ++.|
T Consensus 19 il~~L~lA~kagk-lv~G 35 (122)
T 3o85_A 19 LLNLVKHGASLQA-IKRG 35 (122)
T ss_dssp HHHHHHHHHHTTC-EEES
T ss_pred HHHHHHHHHHhCC-EeEc
Confidence 3445555555554 4443
No 391
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=27.34 E-value=1.2e+02 Score=26.88 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=20.7
Q ss_pred CCcEE-EECC--ChhhHHHHHHHHHHc--CCcEEEecCCCChhhHHHHH
Q 027747 25 ARAVV-IDFT--DASTVYDNVKQATAF--GMRSVVYVPHIQLETVSALS 68 (219)
Q Consensus 25 ~~DVv-IDFS--~p~~~~~~~~~~~~~--g~p~ViGTTG~~~~~~~~l~ 68 (219)
.+|+| ||.+ +|+...+.++.+.+. +++++.|+. .+.++...+.
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v-~t~e~A~~a~ 167 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNV-ATAEGARALI 167 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHH
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeee-CCHHHHHHHH
Confidence 46643 4544 344455555555554 566655533 3444433333
No 392
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=27.34 E-value=1.6e+02 Score=20.57 Aligned_cols=77 Identities=10% Similarity=0.099 Sum_probs=38.1
Q ss_pred cccccCHHHHHhcccCC-CCCc-EEEECCChhh-HHHHHHHHHHc--CCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 7 IPVMSDLTMVLGSISQS-KARA-VVIDFTDAST-VYDNVKQATAF--GMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~-~~~D-VvIDFS~p~~-~~~~~~~~~~~--g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+....+.++.+....+. ..+| |++|+..|+. -.+.++...+. .+|+|+-|.--+.+ .+.++. +.++--++.
T Consensus 48 v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~---~~~~~~-~~ga~~~l~ 123 (146)
T 4dad_A 48 VTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQ---TLLDAM-RAGVRDVLR 123 (146)
T ss_dssp EEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHH---HHHHHH-TTTEEEEEE
T ss_pred EEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHH---HHHHHH-HhCCceeEc
Confidence 33445555555433222 4689 6889988763 23444444333 56777655544432 222222 244444444
Q ss_pred cChhHH
Q 027747 82 PTLSIG 87 (219)
Q Consensus 82 pNfSlG 87 (219)
-.++..
T Consensus 124 Kp~~~~ 129 (146)
T 4dad_A 124 WPLEPR 129 (146)
T ss_dssp SSCCHH
T ss_pred CCCCHH
Confidence 445543
No 393
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=27.34 E-value=44 Score=31.01 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++.+.+.++...+ +.|+|+.=-|-..+..+.|.+++++.++||+-.+.
T Consensus 211 ~~~i~~~~~~L~~-~rPvIl~G~g~~~~~~~~l~~lae~~~~PV~~t~~ 258 (578)
T 3lq1_A 211 DSSIQKMVTECTG-KKGVFVVGPIDKKELEQPMVDLAKKLGWPILADPL 258 (578)
T ss_dssp HHHHHHHHHHTTT-SCEEEEECSCCCTTCHHHHHHHHHHHTCCEEECGG
T ss_pred hHHHHHHHHHhcc-CCeEEEECCCCChHHHHHHHHHHHhcCcEEEEecC
Confidence 3445555555556 88887755554333457899999999999998653
No 394
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=27.17 E-value=1.5e+02 Score=24.55 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=31.6
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCc-EEEecCCCChhhH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMR-SVVYVPHIQLETV 64 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p-~ViGTTG~~~~~~ 64 (219)
.+|+|+=++.+..+...++.+.+.|+. .++|+.|+...++
T Consensus 196 ~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~i~~~~~~~~~~ 236 (364)
T 3lop_A 196 DVQAIFLGATAEPAAQFVRQYRARGGEAQLLGLSSIDPGIL 236 (364)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHTTCCCEEEECTTSCHHHH
T ss_pred CCCEEEEecCcHHHHHHHHHHHHcCCCCeEEEeccCChHHH
Confidence 689988888888888899999988763 3678888886553
No 395
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=27.15 E-value=1.7e+02 Score=24.75 Aligned_cols=90 Identities=10% Similarity=-0.012 Sum_probs=56.3
Q ss_pred CCcEEEECCChh-hHHHHHHHHHHcCCcEEEecC--CCCh-------hhHHHHHHHhhccCce---EEEccChhH-HHHH
Q 027747 25 ARAVVIDFTDAS-TVYDNVKQATAFGMRSVVYVP--HIQL-------ETVSALSAFCDKASMG---CLIAPTLSI-GSIL 90 (219)
Q Consensus 25 ~~DVvIDFS~p~-~~~~~~~~~~~~g~p~ViGTT--G~~~-------~~~~~l~~~a~~~~~~---vv~spNfSl-Gv~l 90 (219)
..|+|=|.|.-. -..+.++.+.++|.|+|+-+. ...+ +...++.+.+.+.+++ +++=|.+.. |-..
T Consensus 100 Ga~iINdvs~~~d~~~~~~~~~a~~~~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~ 179 (271)
T 2yci_X 100 GHAMINSTSADQWKMDIFFPMAKKYEAAIIGLTMNEKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQ 179 (271)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHHHTCEEEEESCBTTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTST
T ss_pred CCCEEEECCCCccccHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCH
Confidence 688998998763 346788999999999999876 2121 1233444556678998 898888544 2222
Q ss_pred -----HHHHHHHHhhhc-CCeEEEecCCCC
Q 027747 91 -----LQQAAISASFHY-KNVEIVESRPNA 114 (219)
Q Consensus 91 -----l~~~~~~aa~~~-~dieIiE~Hh~K 114 (219)
+.+-++.+.+.+ |++-++=-..||
T Consensus 180 ~~~~~~l~~l~~~~~~~~p~~p~l~G~Snk 209 (271)
T 2yci_X 180 EHAVEVLETIRQIKLMANPAPRTVLGLSNV 209 (271)
T ss_dssp HHHHHHHHHHHHHTTSSSSCCEEEEEGGGG
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEeeCcc
Confidence 223344444444 566665544543
No 396
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=27.13 E-value=1.5e+02 Score=23.71 Aligned_cols=39 Identities=10% Similarity=0.090 Sum_probs=25.2
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
..|+|.++. .+||+||-.+. .-.+..+...+.|+|+|.=
T Consensus 50 ~~n~E~i~~-----l~PDLIi~~~~--~~~~~~~~L~~~gipvv~~ 88 (260)
T 2q8p_A 50 EPNVEAVKK-----LKPTHVLSVST--IKDEMQPFYKQLNMKGYFY 88 (260)
T ss_dssp SCCHHHHHH-----TCCSEEEEEGG--GHHHHHHHHHHHTSCCEEE
T ss_pred CCCHHHHHh-----cCCCEEEecCc--cCHHHHHHHHHcCCcEEEe
Confidence 348899887 48998875332 1234455666778887653
No 397
>4hyl_A Stage II sporulation protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 1.75A {Haliangium ochraceum}
Probab=27.07 E-value=1.4e+02 Score=20.85 Aligned_cols=33 Identities=6% Similarity=0.131 Sum_probs=18.4
Q ss_pred cEEEECCCh--------hhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 27 AVVIDFTDA--------STVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 27 DVvIDFS~p--------~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
.|+|||+.- ..+....+.+.+.|.++++ +|.++
T Consensus 44 ~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l--~~~~~ 84 (117)
T 4hyl_A 44 KMILDLREVSYMSSAGLRVLLSLYRHTSNQQGALVL--VGVSE 84 (117)
T ss_dssp EEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCEEEE--ECCCH
T ss_pred eEEEECCCCcEEcHHHHHHHHHHHHHHHHcCCEEEE--EeCCH
Confidence 667776653 2344455555666666665 24444
No 398
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=27.06 E-value=80 Score=28.68 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=31.6
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCC-cEEEecCCCChh
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGM-RSVVYVPHIQLE 62 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~-p~ViGTTG~~~~ 62 (219)
..+||||=|..++.+...++.+.+.|+ .+.|||.||+..
T Consensus 243 s~a~vIi~~~~~~~~~~~~~~~~~~g~~~~~i~s~~~~~~ 282 (555)
T 2e4u_A 243 PNARVVVLFMRSDDSRELIAAANRVNASFTWVASDGWGAQ 282 (555)
T ss_dssp TTCCEEEEECCHHHHHHHHHHHHHTTCCCEEEECTTTTTC
T ss_pred CCCCEEEEEcCHHHHHHHHHHHHHhcCCeEEEEecccccc
Confidence 368999999999888888888888765 456799999763
No 399
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=26.98 E-value=1.5e+02 Score=25.76 Aligned_cols=68 Identities=12% Similarity=0.217 Sum_probs=49.0
Q ss_pred HHHHHhcccCCCCCc---EEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCce---EEEccChh-
Q 027747 13 LTMVLGSISQSKARA---VVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMG---CLIAPTLS- 85 (219)
Q Consensus 13 l~~~l~~~~~~~~~D---VvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~---vv~spNfS- 85 (219)
++.+++. ..| +|=|-|.- ...+.++.|.++|.|+|+-+.. +-+...++.+.+.+.+++ +++=|.+.
T Consensus 140 ~eaal~a-----ga~~k~iINdvs~~-~~~~~~~~aa~~g~~vv~m~~~-dv~~l~~~~~~a~~~Gi~~e~IilDPg~g~ 212 (310)
T 2h9a_B 140 FPVIGEA-----LSGRNCLLSSATKD-NYKPIVATCMVHGHSVVASAPL-DINLSKQLNIMIMEMNLAPNRIIMDPLIGA 212 (310)
T ss_dssp HHHHHHH-----TTTSCCEEEEECTT-THHHHHHHHHHHTCEEEEECSS-CHHHHHHHHHHHHTTTCCGGGEEEECCCCC
T ss_pred HHHHHHh-----CCCCCCEEEECCCC-ccHHHHHHHHHhCCCEEEEChh-HHHHHHHHHHHHHHCCCChhhEEEeCCCcc
Confidence 4556654 344 67777754 5788899999999999998863 334456666677778885 89999976
Q ss_pred HH
Q 027747 86 IG 87 (219)
Q Consensus 86 lG 87 (219)
+|
T Consensus 213 ~g 214 (310)
T 2h9a_B 213 LG 214 (310)
T ss_dssp TT
T ss_pred cc
Confidence 56
No 400
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Probab=26.98 E-value=68 Score=27.93 Aligned_cols=54 Identities=13% Similarity=0.032 Sum_probs=34.7
Q ss_pred cccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHH---cCCcEEE--ecCCCChhhHHHHH
Q 027747 9 VMSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATA---FGMRSVV--YVPHIQLETVSALS 68 (219)
Q Consensus 9 v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~---~g~p~Vi--GTTG~~~~~~~~l~ 68 (219)
+++++++++. .+|+||=..-+....+.++.... .+..+|. ++.|++....+.+.
T Consensus 72 ~~~~~~~a~~------~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G~~~~~~~~l~ 130 (404)
T 3c7a_A 72 ITKDPEIAIS------GADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQCRDILG 130 (404)
T ss_dssp EESCHHHHHT------TCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTTHHHHHHHHHG
T ss_pred EeCCHHHHhC------CCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCccHHHHHHHHHH
Confidence 5668888775 69999988877777776665543 2555666 56665443223444
No 401
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=26.78 E-value=95 Score=22.41 Aligned_cols=17 Identities=12% Similarity=0.106 Sum_probs=8.3
Q ss_pred ECCChhhHHHHHHHHHH
Q 027747 31 DFTDASTVYDNVKQATA 47 (219)
Q Consensus 31 DFS~p~~~~~~~~~~~~ 47 (219)
||.+.+.+.+.+..+..
T Consensus 26 ~f~~a~~~~~~l~~~~~ 42 (130)
T 2kln_A 26 CFANAEDFRRRALTVVD 42 (130)
T ss_dssp BTTTHHHHHHHHHHHTT
T ss_pred EechHHHHHHHHHHHHh
Confidence 45555555555544443
No 402
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=26.78 E-value=1e+02 Score=26.03 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=12.7
Q ss_pred cEEEECCChhhHHHHHHHHHHcCC
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGM 50 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~ 50 (219)
++.| .|+...+.+.++...+.|+
T Consensus 98 ~i~i-~TNG~ll~~~~~~L~~~g~ 120 (340)
T 1tv8_A 98 DIGL-TTNGLLLKKHGQKLYDAGL 120 (340)
T ss_dssp EEEE-EECSTTHHHHHHHHHHHTC
T ss_pred eEEE-EeCccchHHHHHHHHHCCC
Confidence 3434 4566555556666666554
No 403
>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*
Probab=26.71 E-value=55 Score=26.38 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=28.7
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFC 71 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a 71 (219)
.+|+||-.+.|..+.+.++.....+..+|.-++|++.+ .|.+..
T Consensus 57 ~~D~vi~~v~~~~~~~v~~~l~~~~~ivv~~~~g~~~~---~l~~~~ 100 (263)
T 1yqg_A 57 SDDVLILAVKPQDMEAACKNIRTNGALVLSVAAGLSVG---TLSRYL 100 (263)
T ss_dssp TTSEEEECSCHHHHHHHHTTCCCTTCEEEECCTTCCHH---HHHHHT
T ss_pred cCCEEEEEeCchhHHHHHHHhccCCCEEEEecCCCCHH---HHHHHc
Confidence 48999988888777766653321255566666889873 455554
No 404
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=26.69 E-value=2.4e+02 Score=22.45 Aligned_cols=33 Identities=12% Similarity=-0.094 Sum_probs=19.4
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|.+|=++ .++...+.++.+.+.|+|+|+=-+
T Consensus 59 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~ 92 (288)
T 1gud_A 59 NYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDE 92 (288)
T ss_dssp SEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESS
T ss_pred CCCEEEEeCCChHHHHHHHHHHHHCCCeEEEECC
Confidence 578555332 233334556777778888876444
No 405
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=26.57 E-value=51 Score=30.56 Aligned_cols=69 Identities=9% Similarity=0.046 Sum_probs=33.0
Q ss_pred HHHhcccCCCCCc-EEEECCC-------h-hhHHHHH-HHHHHc--CCcE-EEecCCCC---hhhHHHHHHHhhccCceE
Q 027747 15 MVLGSISQSKARA-VVIDFTD-------A-STVYDNV-KQATAF--GMRS-VVYVPHIQ---LETVSALSAFCDKASMGC 78 (219)
Q Consensus 15 ~~l~~~~~~~~~D-VvIDFS~-------p-~~~~~~~-~~~~~~--g~p~-ViGTTG~~---~~~~~~l~~~a~~~~~~v 78 (219)
++++...+....| |++||.. | +.+-+.+ +...+. ++|+ ++++.|-+ ++..++-.+.-++.++|+
T Consensus 318 ~al~~~l~D~~vd~vlv~~v~~~~~~~d~~~~~a~ai~~~~~~~~~~kp~v~v~~~~g~~~~~~~~~~~~~~L~~aGIp~ 397 (480)
T 3dmy_A 318 QLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAV 397 (480)
T ss_dssp HHHHHGGGCTTEEEEEEEEECSTTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTSTTCHHHHHHHHHHTTCEE
T ss_pred HHHHHHhcCCCCCEEEEEeecCCCCCCChHHHHHHHHHHHHHhccCCCCeEEEEEecCcccchhhHHHHHHHHHhCCCcc
Confidence 3443333335677 5666642 2 3333444 333444 7884 66655433 221211222223478888
Q ss_pred EEccC
Q 027747 79 LIAPT 83 (219)
Q Consensus 79 v~spN 83 (219)
+-+|-
T Consensus 398 f~spe 402 (480)
T 3dmy_A 398 VSSLP 402 (480)
T ss_dssp CSSHH
T ss_pred cCCHH
Confidence 76664
No 406
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=26.48 E-value=2.8e+02 Score=25.20 Aligned_cols=72 Identities=11% Similarity=0.021 Sum_probs=48.7
Q ss_pred HHHHHHHHHcCCcEEEecC-CCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHHHHHHhhhcCCeEEEec
Q 027747 39 YDNVKQATAFGMRSVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQAAISASFHYKNVEIVES 110 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~~~~aa~~~~dieIiE~ 110 (219)
...+.++.+.|..+.+-++ -+.+...+.|+.+++..++|++..+...--+.++...++.+....||+=|+|.
T Consensus 118 ~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDT 190 (443)
T 3dm5_A 118 AKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDT 190 (443)
T ss_dssp HHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 4445555666666544443 35555677888888888999887655444455666667777655689999997
No 407
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=26.46 E-value=60 Score=26.83 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=42.0
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+++.+.+. .+|++|=-|..+...-.+-.|+..|+|+|.--.|...+ .+.+ .+.++++.
T Consensus 262 ~~~~~~~~------~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e---~i~~----~~~g~~~~ 319 (374)
T 2iw1_A 262 NDVSELMA------AADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAH---YIAD----ANCGTVIA 319 (374)
T ss_dssp SCHHHHHH------HCSEEEECCSCCSSCHHHHHHHHHTCCEEEETTSTTTH---HHHH----HTCEEEEC
T ss_pred ccHHHHHH------hcCEEEeccccCCcccHHHHHHHCCCCEEEecCCCchh---hhcc----CCceEEeC
Confidence 56777876 58999988877777777888999999999877665443 3332 33567775
No 408
>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}
Probab=26.45 E-value=36 Score=29.97 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=25.8
Q ss_pred CCcEEEECCChhhHHHHHH-HHHHcCCcEEEecCCC
Q 027747 25 ARAVVIDFTDASTVYDNVK-QATAFGMRSVVYVPHI 59 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~-~~~~~g~p~ViGTTG~ 59 (219)
++|+|++.|-.....+..+ .+++.|+++|+ +.+.
T Consensus 81 ~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~-sap~ 115 (343)
T 2yyy_A 81 DADIVVDGAPKKIGKQNLENIYKPHKVKAIL-QGGE 115 (343)
T ss_dssp GCSEEEECCCTTHHHHHHHHTTTTTTCEEEE-CTTS
T ss_pred CCCEEEECCCccccHHHHHHHHHHCCCEEEE-CCCc
Confidence 6899998876666688885 89999988665 4443
No 409
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=26.40 E-value=23 Score=28.00 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=21.0
Q ss_pred CcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 50 MRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 50 ~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
..+|+..||+++++.+.|.+++++.| ..+++++
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G--~~~~~~~ 35 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHH--ITLTNLI 35 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHT--CEECSSC
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhC--CEEeCcc
Confidence 45677778888777777877775543 3444444
No 410
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=26.36 E-value=55 Score=27.35 Aligned_cols=51 Identities=14% Similarity=0.103 Sum_probs=29.3
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCChhh--HHHHHHHHH---HcCCcEEEecCCCChhh
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDAST--VYDNVKQAT---AFGMRSVVYVPHIQLET 63 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~--~~~~~~~~~---~~g~p~ViGTTG~~~~~ 63 (219)
+.+++|+++.+. .+|+||....+.. ..+.++... ..+.-++.-|+|++.++
T Consensus 88 i~~~~~~~~~~~------~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~ 143 (302)
T 1f0y_A 88 IATSTDAASVVH------STDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITS 143 (302)
T ss_dssp EEEESCHHHHTT------SCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHH
T ss_pred eEEecCHHHhhc------CCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHH
Confidence 445678877764 6999997663321 223333222 22444555788988754
No 411
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=26.33 E-value=61 Score=27.34 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=43.3
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
.++.+++. .+|++|--|..+..--.+-.|+..|+|+|.--+|...+ +.+....++++.++
T Consensus 276 ~~~~~~~~------~adv~v~ps~~e~~~~~~~EAma~G~PvI~~~~~~~~e-------~v~~~~~g~~~~~~ 335 (394)
T 2jjm_A 276 DNVAELLA------MSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPE-------VIQHGDTGYLCEVG 335 (394)
T ss_dssp SCTHHHHH------TCSEEEECCSCCSCCHHHHHHHHTTCCEEEECCTTSTT-------TCCBTTTEEEECTT
T ss_pred hhHHHHHH------hCCEEEeccccCCCchHHHHHHhcCCCEEEecCCChHH-------HhhcCCceEEeCCC
Confidence 56777886 69999988887777777888999999999876665443 23333456777653
No 412
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*
Probab=26.27 E-value=1e+02 Score=24.45 Aligned_cols=69 Identities=10% Similarity=-0.034 Sum_probs=40.7
Q ss_pred ccccccCHHHHHhcccCCCCCcEEEECCChhhHHHHH--HHHHHcCCcEEEecCCCChhhH-------HHHHHHhhccCc
Q 027747 6 EIPVMSDLTMVLGSISQSKARAVVIDFTDASTVYDNV--KQATAFGMRSVVYVPHIQLETV-------SALSAFCDKASM 76 (219)
Q Consensus 6 ~~~v~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~--~~~~~~g~p~ViGTTG~~~~~~-------~~l~~~a~~~~~ 76 (219)
|+.+. ++++++. .+|+||--+.|....+.+ .... .+..+|.-++|.+.+.+ +.+.+.. .+.
T Consensus 71 g~~~~-~~~~~~~------~~DvVi~av~~~~~~~v~~l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l--~~~ 140 (215)
T 2vns_A 71 AAQVT-FQEEAVS------SPEVIFVAVFREHYSSLCSLSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLF--PTC 140 (215)
T ss_dssp TSEEE-EHHHHTT------SCSEEEECSCGGGSGGGGGGHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHC--TTS
T ss_pred CCcee-cHHHHHh------CCCEEEECCChHHHHHHHHHHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHC--CCC
Confidence 33433 5666664 689999877765543333 2233 67788888899875432 2233433 334
Q ss_pred eEEEccCh
Q 027747 77 GCLIAPTL 84 (219)
Q Consensus 77 ~vv~spNf 84 (219)
+++-+-|+
T Consensus 141 ~vv~~~n~ 148 (215)
T 2vns_A 141 TVVKAFNV 148 (215)
T ss_dssp EEEEECTT
T ss_pred eEEecccc
Confidence 66666676
No 413
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=26.24 E-value=1.7e+02 Score=20.42 Aligned_cols=50 Identities=2% Similarity=-0.033 Sum_probs=23.4
Q ss_pred ccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHH----cCCcEEEecCCCC
Q 027747 10 MSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATA----FGMRSVVYVPHIQ 60 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~----~g~p~ViGTTG~~ 60 (219)
..+.++++....+ ..+| |++|...|+. -.+.++...+ ..+|+|+-|.-.+
T Consensus 38 ~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~ 93 (147)
T 2zay_A 38 CGNAIEAVPVAVK-THPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRAT 93 (147)
T ss_dssp ESSHHHHHHHHHH-HCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCC
T ss_pred eCCHHHHHHHHHc-CCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCC
Confidence 4455554433211 2466 4667666542 2344444443 3456665544433
No 414
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=26.23 E-value=82 Score=26.10 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=0.0
Q ss_pred HHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCc----EEEecC-CCChhhHHHHHHHhhccCceEEEccChhHH
Q 027747 13 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR----SVVYVP-HIQLETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p----~ViGTT-G~~~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
+.+++.+ ++|+|+=+..+..+...++.+.+.|+. .++|+. .++++.++.+...+ .++-+......+..
T Consensus 187 ~~~l~~~-----~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~g~~~--~g~~~~~~~~~~~~ 259 (368)
T 4eyg_A 187 LQRMKDA-----KPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDDLLNSMGDAA--LGVVTAHMYSAAHP 259 (368)
T ss_dssp HHHHHHH-----CCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHHHHTTCCGGG--TTCEEEESCCTTCC
T ss_pred HHHHHhc-----CCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCHHHHHhhhhhh--CCeEEeeecCCCCC
Q ss_pred HHHHHHHHHHHhhhc
Q 027747 88 SILLQQAAISASFHY 102 (219)
Q Consensus 88 v~ll~~~~~~aa~~~ 102 (219)
.-...++.+.. +.+
T Consensus 260 ~~~~~~f~~~~-~~~ 273 (368)
T 4eyg_A 260 SAMNKEFVAAY-KKE 273 (368)
T ss_dssp SHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHH-HHh
No 415
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=26.13 E-value=1.5e+02 Score=25.38 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=15.3
Q ss_pred CChhhHHHHHHHhhccCceEEE
Q 027747 59 IQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 59 ~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
++.+++++|.++|+++++.+++
T Consensus 208 ~~~~~l~~l~~~~~~~~~~li~ 229 (435)
T 3piu_A 208 MTRNELYLLLSFVEDKGIHLIS 229 (435)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEE
T ss_pred CCHHHHHHHHHHHHHcCCEEEE
Confidence 5566677777777777776664
No 416
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=26.09 E-value=92 Score=24.60 Aligned_cols=29 Identities=17% Similarity=0.024 Sum_probs=15.9
Q ss_pred CCcEEEECC-ChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFT-DASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=+. .++ .+.++.+.+.|+|+|.-
T Consensus 59 ~vdgii~~~~~~~--~~~~~~l~~~~iPvV~~ 88 (275)
T 3d8u_A 59 RPAGVVLFGSEHS--QRTHQLLEASNTPVLEI 88 (275)
T ss_dssp CCCCEEEESSCCC--HHHHHHHHHHTCCEEEE
T ss_pred CCCEEEEeCCCCC--HHHHHHHHhCCCCEEEE
Confidence 577444222 221 34566666778887764
No 417
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=26.05 E-value=1.2e+02 Score=20.91 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=6.5
Q ss_pred CCc-EEEECCChh
Q 027747 25 ARA-VVIDFTDAS 36 (219)
Q Consensus 25 ~~D-VvIDFS~p~ 36 (219)
.+| |++|+..|+
T Consensus 51 ~~dlvi~d~~l~~ 63 (137)
T 3hdg_A 51 APDVIITDIRMPK 63 (137)
T ss_dssp CCSEEEECSSCSS
T ss_pred CCCEEEEeCCCCC
Confidence 456 456665553
No 418
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=25.99 E-value=90 Score=21.44 Aligned_cols=50 Identities=8% Similarity=-0.031 Sum_probs=27.5
Q ss_pred cccccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHHc----CCcEEEecC
Q 027747 7 IPVMSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATAF----GMRSVVYVP 57 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~~----g~p~ViGTT 57 (219)
+....+.++++....+ ..+| |++|...|+. -.+.++...+. .+|+|+-|.
T Consensus 30 v~~~~~~~~a~~~l~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 85 (133)
T 3nhm_A 30 CTTAADGASGLQQALA-HPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSG 85 (133)
T ss_dssp EEEESSHHHHHHHHHH-SCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEES
T ss_pred EEEECCHHHHHHHHhc-CCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeC
Confidence 3445566666543322 3578 5778877652 34455555543 566666554
No 419
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=25.98 E-value=76 Score=22.63 Aligned_cols=8 Identities=13% Similarity=0.073 Sum_probs=3.2
Q ss_pred CceEEEcc
Q 027747 75 SMGCLIAP 82 (219)
Q Consensus 75 ~~~vv~sp 82 (219)
.+|+++-+
T Consensus 78 ~~~ii~ls 85 (154)
T 2qsj_A 78 SNAVALIS 85 (154)
T ss_dssp TSEEEEC-
T ss_pred CCeEEEEe
Confidence 34544443
No 420
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=25.88 E-value=1e+02 Score=25.51 Aligned_cols=46 Identities=11% Similarity=-0.049 Sum_probs=30.2
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcE-EEecCCCC-hhhHHHHHHHh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRS-VVYVPHIQ-LETVSALSAFC 71 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~-ViGTTG~~-~~~~~~l~~~a 71 (219)
.+|+|+=+.++......++.+.+.|+.+ ++|+ +|. ++-++.+...+
T Consensus 206 ~~dai~~~~~~~~a~~~~~~~~~~g~~vp~~~~-~~~~~~~~~~~g~~~ 253 (375)
T 4evq_A 206 KPDCVYAFFSGGGALKFIKDYAAANLGIPLWGP-GFLTDGVEAAAGPAG 253 (375)
T ss_dssp CCSEEEEECCTHHHHHHHHHHHHTTCCCCEEEE-GGGTTTTHHHHGGGG
T ss_pred CCCEEEEecCcchHHHHHHHHHHcCCCceEEec-CcCCHHHHHhhhhhc
Confidence 6899888777788888999999988643 3444 553 32334444333
No 421
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=25.88 E-value=39 Score=24.73 Aligned_cols=38 Identities=11% Similarity=0.183 Sum_probs=28.5
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCC-cEEE
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGM-RSVV 54 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~-p~Vi 54 (219)
.++.+++. .+|++|--|..+...-.+-.|+..|+ |+|.
T Consensus 66 ~~~~~~~~------~adv~v~ps~~e~~~~~~~Eama~G~vPvi~ 104 (166)
T 3qhp_A 66 NELLEILK------TCTLYVHAANVESEAIACLEAISVGIVPVIA 104 (166)
T ss_dssp HHHHHHHT------TCSEEEECCCSCCCCHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHH------hCCEEEECCcccCccHHHHHHHhcCCCcEEe
Confidence 35556665 68998887877777777788889997 7666
No 422
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=25.77 E-value=1e+02 Score=26.04 Aligned_cols=40 Identities=8% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHcCCcEEEecCC----CChhhHHHHHHHhhccCceEEE-ccChh
Q 027747 45 ATAFGMRSVVYVPH----IQLETVSALSAFCDKASMGCLI-APTLS 85 (219)
Q Consensus 45 ~~~~g~p~ViGTTG----~~~~~~~~l~~~a~~~~~~vv~-spNfS 85 (219)
+..+|+.. +|..| .++.++.+|.+.+++.++++|+ -|++|
T Consensus 204 ~~~yGl~~-~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~ 248 (291)
T 1pq4_A 204 ARDYNLVQ-IPIEVEGQEPSAQELKQLIDTAKENNLTMVFGETQFS 248 (291)
T ss_dssp HHHTTCEE-EESCBTTBCCCHHHHHHHHHHHHTTTCCEEEEETTSC
T ss_pred HHHCCCEE-eecccCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 44667764 35443 5677888888888888888776 45555
No 423
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=25.74 E-value=2e+02 Score=21.22 Aligned_cols=59 Identities=12% Similarity=0.031 Sum_probs=44.3
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
..++|=+...+.+....+...+.|.++..=..+.++++...+.+.-++....++++.+.
T Consensus 31 ~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 89 (165)
T 1fuk_A 31 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 89 (165)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 34777667778888888888888999888888888877665544444567888988864
No 424
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=25.69 E-value=2.1e+02 Score=22.51 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=19.8
Q ss_pred CCCcEEEECC-ChhhHHHHHHHHHHcCCcEEEe
Q 027747 24 KARAVVIDFT-DASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 24 ~~~DVvIDFS-~p~~~~~~~~~~~~~g~p~ViG 55 (219)
..+|.+|=++ .++...+.++.+.+.|+|+|.=
T Consensus 56 ~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i 88 (271)
T 2dri_A 56 RGTKILLINPTDSDAVGNAVKMANQANIPVITL 88 (271)
T ss_dssp TTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEe
Confidence 3578555333 3333345677778889998764
No 425
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=25.59 E-value=86 Score=28.21 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=31.9
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCc---EEEecCCCChh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMR---SVVYVPHIQLE 62 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p---~ViGTTG~~~~ 62 (219)
.++|||-|..++.+...++.+.+.|.. ..|||.||+..
T Consensus 256 ~a~vii~~~~~~~~~~l~~~~~~~g~~~k~~~i~s~~w~~~ 296 (496)
T 3ks9_A 256 KARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADR 296 (496)
T ss_dssp TTCEEEEECCHHHHHHHHHHHHHHTCCSCCEEEECTTTTTC
T ss_pred ceEEEEEecChHHHHHHHHHHHHhCCCCcEEEEEechhccc
Confidence 578999999888888889999998876 56999999753
No 426
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=25.37 E-value=2.5e+02 Score=23.73 Aligned_cols=60 Identities=5% Similarity=0.030 Sum_probs=44.6
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
.-+++|=+...+.+....+...+.|.++..=..++++++.+.+.+.-+...+.|+++.|.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~v 87 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDV 87 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECST
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEech
Confidence 356788666667777777887788999888888888877666554444567889999875
No 427
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=25.28 E-value=36 Score=26.97 Aligned_cols=88 Identities=9% Similarity=-0.006 Sum_probs=42.3
Q ss_pred CCcEEE------ECCChhhHHHHHHHH------------HHcCCcEEEecCCCChhh----------H-------HHHHH
Q 027747 25 ARAVVI------DFTDASTVYDNVKQA------------TAFGMRSVVYVPHIQLET----------V-------SALSA 69 (219)
Q Consensus 25 ~~DVvI------DFS~p~~~~~~~~~~------------~~~g~p~ViGTTG~~~~~----------~-------~~l~~ 69 (219)
.+|+|| -|+-|..++..++.. ++.+.-+++.|+|-.++. + ..+-.
T Consensus 51 ~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~ 130 (177)
T 3ha2_A 51 QNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFAN 130 (177)
T ss_dssp TCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHH
T ss_pred hCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHH
Confidence 589665 457778888877663 223344566666754321 1 11222
Q ss_pred HhhccCceEEEccChh-HHHHHHHHHHHHHhhhcCCeEEEecCC
Q 027747 70 FCDKASMGCLIAPTLS-IGSILLQQAAISASFHYKNVEIVESRP 112 (219)
Q Consensus 70 ~a~~~~~~vv~spNfS-lGv~ll~~~~~~aa~~~~dieIiE~Hh 112 (219)
++.-..+|.+...++. ..-.-..+.++...+++-+....|.||
T Consensus 131 ~~G~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~ 174 (177)
T 3ha2_A 131 KTKMMYLPILAVHQFLYLEPDAQQRLLVAYQQYATNVGALEHHH 174 (177)
T ss_dssp HTTCEECCCEEEESGGGSCHHHHHHHHHHHHHHHHCCC------
T ss_pred hCCCeEeCeEEEeCCCCCCHHHHHHHHHHHHHHHccccchhhcc
Confidence 3322333444444433 122233555666666677888888865
No 428
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=25.12 E-value=1.7e+02 Score=23.31 Aligned_cols=55 Identities=9% Similarity=0.122 Sum_probs=36.6
Q ss_pred EECCChhhHHHHHHHHHHc-C-CcEEEecCCCChhhHHHHHHHhhccC-ceEEEccChh
Q 027747 30 IDFTDASTVYDNVKQATAF-G-MRSVVYVPHIQLETVSALSAFCDKAS-MGCLIAPTLS 85 (219)
Q Consensus 30 IDFS~p~~~~~~~~~~~~~-g-~p~ViGTTG~~~~~~~~l~~~a~~~~-~~vv~spNfS 85 (219)
+....|+.+.+.++...+. . ..+++|.-+ +++..+.+.+++++.+ +|+++=||+.
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~v~~G~l~-~~~~~~~~~~~~~~~~~~~vv~Dp~~~ 107 (258)
T 1ub0_A 50 VHLLPPEVVYAQIESVAQDFPLHAAKTGALG-DAAIVEAVAEAVRRFGVRPLVVDPVMV 107 (258)
T ss_dssp EEECCHHHHHHHHHHHHHHSCCSEEEECCCC-SHHHHHHHHHHHHHTTCCSEEECCCC-
T ss_pred EEeCCHHHHHHHHHHHHcCCCCCEEEECCcC-CHHHHHHHHHHHHhCCCCcEEECCeee
Confidence 4455677776666655542 2 346678754 5556677777777777 8999999983
No 429
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=25.11 E-value=85 Score=28.80 Aligned_cols=52 Identities=8% Similarity=-0.075 Sum_probs=37.7
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHH
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGS 88 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv 88 (219)
++.+.+.++...+.+.|+|+.=-|.. +..+.|.+++++.++|++-++ ++.|+
T Consensus 188 ~~~i~~~~~~l~~A~rpvIl~G~g~~-~a~~~l~~lae~~~~Pv~~t~-~gkg~ 239 (549)
T 3eya_A 188 EEELRKLAQLLRYSSNIALMCGSGCA-GAHKELVEFAGKIKAPIVHAL-RGKEH 239 (549)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECGGGT-TCHHHHHHHHHHHTCCEEECG-GGHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCch-HHHHHHHHHHHHhCCCEEECC-ccCcC
Confidence 56677777777778889887544443 345789999999999998754 56554
No 430
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=25.08 E-value=71 Score=23.22 Aligned_cols=56 Identities=9% Similarity=0.060 Sum_probs=41.6
Q ss_pred CCcEEEECCChhhHHHHHHHHHHc-CCcEEEecCCCChhhHHHHHHHhhccCceEEE
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAF-GMRSVVYVPHIQLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~-g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~ 80 (219)
+.+.+.+.+.++.+.+.++.+++. .+.+|+=|..+-+.-.+.+.++-++...|+|+
T Consensus 28 Gi~~~~~~~~~ee~~~~~~~l~~~~digIIlIte~ia~~i~~~i~~~~~~~~~P~Ii 84 (102)
T 2i4r_A 28 GISDIYEVTSDEEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPVLRREIDEKVEPTFV 84 (102)
T ss_dssp TCCCEEECCSHHHHHHHHHHHHHCSSEEEEEEEGGGSTTSCHHHHTTTTTCCSSEEE
T ss_pred CCCcccCCCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHHHHHHHHHHHhCCCccEEE
Confidence 567677788999899999888887 78888888777655456677776544677665
No 431
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=25.05 E-value=1.3e+02 Score=20.44 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=7.7
Q ss_pred HHHHHHHHHcCCcEEE
Q 027747 39 YDNVKQATAFGMRSVV 54 (219)
Q Consensus 39 ~~~~~~~~~~g~p~Vi 54 (219)
....+.+.+.|..+++
T Consensus 66 ~~~~~~~~~~g~~l~l 81 (110)
T 1sbo_A 66 VVILKDAKINGKEFIL 81 (110)
T ss_dssp HHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCEEEE
Confidence 3344444455555554
No 432
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=25.03 E-value=29 Score=31.15 Aligned_cols=50 Identities=10% Similarity=0.061 Sum_probs=23.1
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCc---EEEecCCCCh
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMR---SVVYVPHIQL 61 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p---~ViGTTG~~~ 61 (219)
+....+.++.+...+||||=|..++.+...++.+.+.|+. +.|+|.+|+.
T Consensus 234 d~~~~l~~i~~~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~~~~wI~s~~w~~ 286 (481)
T 3mq4_A 234 DFDRIIKQLLDTPNSRAVVIFANDEDIKQILAAAKRADQVGHFLWVGSDSWGS 286 (481)
T ss_dssp CCSHHHHCCCCC----CEEECCCSSHHHHHC----------CCCEEEC-----
T ss_pred HHHHHHHHHHhcCCCEEEEEEEChHHHHHHHHHHHHccCCcceEEEEECcccc
Confidence 4445554432224689999999999888888888887764 6889999975
No 433
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=25.00 E-value=55 Score=28.39 Aligned_cols=54 Identities=7% Similarity=0.050 Sum_probs=36.1
Q ss_pred eEEEccChhHHHHHHHHHHHHHhhhcCCeEEEecC-------CCCCCCCcHHHHHHHHHHHh
Q 027747 77 GCLIAPTLSIGSILLQQAAISASFHYKNVEIVESR-------PNARDFPSPDATQIANNLSN 131 (219)
Q Consensus 77 ~vv~spNfSlGv~ll~~~~~~aa~~~~dieIiE~H-------h~K~DaPSGTA~~la~~i~~ 131 (219)
-+++.|||..=..+..++...+.++-|.+|..-.. .... .--|++..+++.|.+
T Consensus 71 l~~~~~~~~~Y~~~s~~i~~il~~~tp~ve~~SiDE~~lDvt~~~~-~~~~~~~~la~~ir~ 131 (354)
T 3bq0_A 71 AIYVPMRKPIYEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVE-GNFENGIELARKIKQ 131 (354)
T ss_dssp CEEEECCHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEECTTTTT-TCHHHHHHHHHHHHH
T ss_pred eEEECCCHHHHHHHHHHHHHHHHHhCCCEEEecCCeeEEecCcchh-hccCCHHHHHHHHHH
Confidence 37899999999989899988888876777754332 1111 012566666666654
No 434
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=25.00 E-value=74 Score=29.49 Aligned_cols=47 Identities=9% Similarity=-0.031 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
++.+.+.++...+.+.|+|+.=-|-.... +.|.+++++.++|++-.+
T Consensus 201 ~~~i~~~~~~l~~a~rpvIl~G~g~~~~~-~~l~~lae~~~~Pv~~t~ 247 (590)
T 1ybh_A 201 DSHLEQIVRLISESKKPVLYVGGGCLNSS-DELGRFVELTGIPVASTL 247 (590)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGGTTCH-HHHHHHHHHHCCCEEECT
T ss_pred HHHHHHHHHHHHhCCCcEEEECcccccCH-HHHHHHHHHhCCCEEEch
Confidence 45566777777788899988766644444 889999999999998753
No 435
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=24.97 E-value=86 Score=26.16 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=4.8
Q ss_pred HHHHHHHhhccCc
Q 027747 64 VSALSAFCDKASM 76 (219)
Q Consensus 64 ~~~l~~~a~~~~~ 76 (219)
+++|.++|+++++
T Consensus 176 l~~i~~la~~~~~ 188 (375)
T 3op7_A 176 LEELVEIASEVGA 188 (375)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcCC
Confidence 3333333333333
No 436
>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*
Probab=24.95 E-value=1.1e+02 Score=24.35 Aligned_cols=47 Identities=6% Similarity=0.073 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHH
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIG 87 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlG 87 (219)
.+..+.+++.+.+.++=|-|+... +.+.+++++.++|++.++--...
T Consensus 130 ~~~~~~~i~~~~~~liit~~~~~~--~~v~~~a~~~~~~~i~t~~d~~~ 176 (245)
T 3l2b_A 130 AEIQAELIELKVSLLIVTGGHTPS--KEIIELAKKNNITVITTPHDSFT 176 (245)
T ss_dssp HHHHHHHHHTTCSEEEECTTCCCC--HHHHHHHHHHTCEEEECSSCHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCCCC--HHHHHHHHHcCCeEEEeCCChHH
Confidence 677888999999999888887765 36677777899999998865443
No 437
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=24.67 E-value=1.8e+02 Score=20.88 Aligned_cols=33 Identities=6% Similarity=0.174 Sum_probs=18.0
Q ss_pred cEEEECCCh--------hhHHHHHHHHHHcCCcEEEecCCCCh
Q 027747 27 AVVIDFTDA--------STVYDNVKQATAFGMRSVVYVPHIQL 61 (219)
Q Consensus 27 DVvIDFS~p--------~~~~~~~~~~~~~g~p~ViGTTG~~~ 61 (219)
-||+|||.- .++.+..+.+.+.|..+++ +|.++
T Consensus 51 ~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l--~~~~~ 91 (130)
T 4dgh_A 51 ILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLI--SGANS 91 (130)
T ss_dssp EEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEE--ECCCH
T ss_pred EEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEE--EcCCH
Confidence 366666643 3444555555666666665 34444
No 438
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=24.62 E-value=1.9e+02 Score=22.99 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=32.6
Q ss_pred CCcEEEECC-----ChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 25 ARAVVIDFT-----DASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 25 ~~DVvIDFS-----~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
+.++.+.++ .++...+.++.+.+.++.-||-...-.+...+.++.+. +.++|+|+.
T Consensus 40 g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~-~~~iPvV~~ 100 (304)
T 3gbv_A 40 DFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALN-ELGIPYIYI 100 (304)
T ss_dssp GGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHH-HHTCCEEEE
T ss_pred hCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHH-HCCCeEEEE
Confidence 456776543 45556677788888888777765433222223344443 356777764
No 439
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=24.59 E-value=2e+02 Score=24.15 Aligned_cols=78 Identities=6% Similarity=-0.015 Sum_probs=0.0
Q ss_pred CCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC---------------CChhhHHHHHHHhhc---cCceEEEccCh
Q 027747 23 SKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH---------------IQLETVSALSAFCDK---ASMGCLIAPTL 84 (219)
Q Consensus 23 ~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG---------------~~~~~~~~l~~~a~~---~~~~vv~spNf 84 (219)
..+.|.||= ............+.+.++|+|..++. -+..-....+-+.++ +++.+++.+|.
T Consensus 74 ~~~V~~iiG-~~s~~~~a~~~~~~~~~iP~i~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~ 152 (391)
T 3eaf_A 74 RYGVIAIIG-WGTADTEKLSDQVDTDKITYISASYSAKLLVKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKV 152 (391)
T ss_dssp TTCCSEEEE-CCHHHHHHHHHHHHHHTCEEEESCCCGGGTTSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTC
T ss_pred hcCcEEEEE-cCcHHHHHHHHHHhhcCCeEEecccchhhcCCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCC
Q ss_pred hHHHHHHHHHHHHHhhh
Q 027747 85 SIGSILLQQAAISASFH 101 (219)
Q Consensus 85 SlGv~ll~~~~~~aa~~ 101 (219)
..|...+..+.+.+.+.
T Consensus 153 ~~g~~~~~~~~~~l~~~ 169 (391)
T 3eaf_A 153 AYSRSPIGAIKKAAPSL 169 (391)
T ss_dssp HHHHTTHHHHHHHTGGG
T ss_pred hhHHHHHHHHHHHHHHc
No 440
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=24.47 E-value=94 Score=24.67 Aligned_cols=59 Identities=22% Similarity=0.128 Sum_probs=36.3
Q ss_pred CCcEEEECCChhhHHHHHHHHHH-cCCcEEEecCCCC-----hh------hHHHHHHHhhccCceEEEc-cChh
Q 027747 25 ARAVVIDFTDASTVYDNVKQATA-FGMRSVVYVPHIQ-----LE------TVSALSAFCDKASMGCLIA-PTLS 85 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~-~g~p~ViGTTG~~-----~~------~~~~l~~~a~~~~~~vv~s-pNfS 85 (219)
.+|+||=-+.|..+.+.++.... .+..+|..|.|+. .+ ..+.|.+.. .+.+++.+ ||+.
T Consensus 81 ~aDvVilavp~~~~~~v~~~l~~~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l--~~~~vv~~~~~~~ 152 (220)
T 4huj_A 81 QADVVILAVPYDSIADIVTQVSDWGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELV--PGAKVVKAFNTLP 152 (220)
T ss_dssp TSSEEEEESCGGGHHHHHTTCSCCTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHS--TTCEEEEESCSSC
T ss_pred cCCEEEEeCChHHHHHHHHHhhccCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHC--CCCCEEECCCCCC
Confidence 68999988888887777764321 3556666776773 11 345666665 34566655 4443
No 441
>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}
Probab=24.47 E-value=88 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCcEEEecCCC
Q 027747 38 VYDNVKQATAFGMRSVVYVPHI 59 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGTTG~ 59 (219)
+.+.++.+.+.|.+++|.|.+.
T Consensus 97 ~~~~l~~l~~~g~~~~ivS~~~ 118 (232)
T 3fvv_A 97 AVDVVRGHLAAGDLCALVTATN 118 (232)
T ss_dssp HHHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHHCCCEEEEEeCCC
Confidence 3455555555555555555554
No 442
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=24.47 E-value=70 Score=28.00 Aligned_cols=56 Identities=5% Similarity=0.170 Sum_probs=37.5
Q ss_pred CCcE-EEECCChhhHHHHHHHHHHcCCcEEEecCCCCh-----hhHHH-HHHHhhc-cCceEEE
Q 027747 25 ARAV-VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQL-----ETVSA-LSAFCDK-ASMGCLI 80 (219)
Q Consensus 25 ~~DV-vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-----~~~~~-l~~~a~~-~~~~vv~ 80 (219)
.+-| .+++.+-+.+...++.|.+.+.|+++.++-... +-+.. ++.++++ .++||++
T Consensus 16 ~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPVal 79 (307)
T 3n9r_A 16 GYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVAL 79 (307)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTTSCEEE
T ss_pred CceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 3444 788889999999999999999999998762111 11222 3344444 5788887
No 443
>3tg2_A Vibriobactin-specific isochorismatase; hydrolase; HET: ISC PGE; 1.10A {Vibrio cholerae} PDB: 3tb4_A*
Probab=24.46 E-value=2.7e+02 Score=22.46 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=43.4
Q ss_pred cccCHHHHHhcccCCCCCc--EEEECCChhhHHHHHHHHHHcCCcEEE---ecCCCChhhH-HHHHHHh
Q 027747 9 VMSDLTMVLGSISQSKARA--VVIDFTDASTVYDNVKQATAFGMRSVV---YVPHIQLETV-SALSAFC 71 (219)
Q Consensus 9 v~~~l~~~l~~~~~~~~~D--VvIDFS~p~~~~~~~~~~~~~g~p~Vi---GTTG~~~~~~-~~l~~~a 71 (219)
...+|++.|.+ .+.| ++.=...--++...+..|.+.|..+++ ++.+++++.. ..|+.+.
T Consensus 125 ~~t~L~~~L~~----~gi~~lii~G~~t~~CV~~Ta~da~~~Gy~v~vv~Da~as~~~~~h~~aL~~~~ 189 (223)
T 3tg2_A 125 KKSPLLDWLRE----TGRDQLIITGVYAHIGILSTALDAFMFDIQPFVIGDGVADFSLSDHEFSLRYIS 189 (223)
T ss_dssp TTSSHHHHHHH----HTCCEEEEEEECTTTHHHHHHHHHHHTTCEEEEEEEEEECSSHHHHHHHHHHHH
T ss_pred ccccHHHHHHh----cCcCceEEeecccChHHHHHHHHHHHCCCEEEEeCcccCCCCHHHHHHHHHHHH
Confidence 34578888875 2455 577788888999999999999998776 6777887653 3455554
No 444
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=24.40 E-value=1.3e+02 Score=25.92 Aligned_cols=30 Identities=10% Similarity=0.116 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCChhhHHHH
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQLETVSAL 67 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l 67 (219)
+.+.-..++|.+.|+|++ |+=|+.++.+.+
T Consensus 78 ~GL~~L~~~~~e~Glp~~--Tev~d~~~v~~l 107 (285)
T 3sz8_A 78 EGLKIFAEVKARFGVPVI--TDVHEAEQAAPV 107 (285)
T ss_dssp HHHHHHHHHHHHHCCCEE--EECCSGGGHHHH
T ss_pred HHHHHHHHHHHhcCCeEE--EEeCCHHHHHHH
Confidence 445555566666777765 466666555443
No 445
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=24.35 E-value=2.1e+02 Score=22.74 Aligned_cols=39 Identities=21% Similarity=0.083 Sum_probs=23.4
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.|+|.++. .+||+||-.... .-.+..+...+.|+|+|.=
T Consensus 50 ~n~E~i~~-----l~PDLIi~~~~~-~~~~~~~~L~~~gipvv~~ 88 (256)
T 2r7a_A 50 LSSEGILS-----LRPDSVITWQDA-GPQIVLDQLRAQKVNVVTL 88 (256)
T ss_dssp CCHHHHHT-----TCCSEEEEETTC-SCHHHHHHHHHTTCEEEEE
T ss_pred CCHHHHHc-----cCCCEEEEcCCC-CCHHHHHHHHHcCCcEEEe
Confidence 47888886 478987753321 0123444555778887764
No 446
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=24.35 E-value=2.3e+02 Score=21.30 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=43.0
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
-++|=+...+.+....+...+.|.++..=..+.++.+.+.+.+.-++....++++.+.
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~ 90 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 90 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC
T ss_pred cEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc
Confidence 4777666677777777888888999988888888877655444434467888888874
No 447
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=24.32 E-value=1.2e+02 Score=24.94 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=35.7
Q ss_pred Cccccc--cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 5 LEIPVM--SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 5 ~~~~v~--~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.|++|. +++++++++ ...|++|=.+-.....+.++.|.+.|+.-|.-=|
T Consensus 130 ~GvpV~~~~dL~~~v~~----~~Id~vIIAvPs~~aq~v~d~lv~~GIk~I~nFa 180 (212)
T 3keo_A 130 DGIPVYGISTINDHLID----SDIETAILTVPSTEAQEVADILVKAGIKGILSFS 180 (212)
T ss_dssp TCCBEEEGGGHHHHC-C----CSCCEEEECSCGGGHHHHHHHHHHHTCCEEEECS
T ss_pred CCeEEeCHHHHHHHHHH----cCCCEEEEecCchhHHHHHHHHHHcCCCEEEEcC
Confidence 367775 467777653 4689888666556668899999999999988644
No 448
>2hbv_A 2-amino-3-carboxymuconate 6-semialdehyde decarbox; ACMSD, TIM-barrel, decarboxylase, metaloenzyme, lyase; 1.65A {Pseudomonas fluorescens} SCOP: c.1.9.15 PDB: 2hbx_A
Probab=24.31 E-value=2.1e+02 Score=23.88 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=36.9
Q ss_pred EECCChhhHHHHHHHHHHcCCc-EEEecCC----CChhhHHHHHHHhhccCceEEEccC
Q 027747 30 IDFTDASTVYDNVKQATAFGMR-SVVYVPH----IQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 30 IDFS~p~~~~~~~~~~~~~g~p-~ViGTTG----~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
|+-..|+...+-++.|.+.|.. +-+++.+ ++++.+..+-+++++.++|+++=+.
T Consensus 121 l~~~~~~~a~~el~~~~~~g~~Gv~l~~~~~~~~l~d~~~~p~~~~~~e~~lpv~iH~~ 179 (334)
T 2hbv_A 121 VPLQDLDLACKEASRAVAAGHLGIQIGNHLGDKDLDDATLEAFLTHCANEDIPILVHPW 179 (334)
T ss_dssp CCTTSHHHHHHHHHHHHHHTCCCEEEESCBTTBCTTSHHHHHHHHHHHHTTCCEEEECC
T ss_pred cCccCHHHHHHHHHHHHHcCCeEEEECCCCCCCCCCcHHHHHHHHHHHHCCCEEEECCC
Confidence 4445565566667777777754 3477764 3455677777888889999998664
No 449
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=24.27 E-value=2.2e+02 Score=23.01 Aligned_cols=24 Identities=13% Similarity=0.117 Sum_probs=12.9
Q ss_pred CChhhHHHHHHHHHHcCCcEEEec
Q 027747 33 TDASTVYDNVKQATAFGMRSVVYV 56 (219)
Q Consensus 33 S~p~~~~~~~~~~~~~g~p~ViGT 56 (219)
+.|+...+.++..++.++..|||.
T Consensus 53 ~~~~~~~~~~~~l~~~~v~~iig~ 76 (346)
T 1usg_A 53 CDPKQAVAVANKIVNDGIKYVIGH 76 (346)
T ss_dssp TCHHHHHHHHHHHHHTTCCEEECC
T ss_pred CCHHHHHHHHHHHHhCCCCEEEcC
Confidence 345555555555555566666653
No 450
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=24.26 E-value=1.2e+02 Score=26.90 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=33.6
Q ss_pred ChhhHHHHHHHHHHcCCc--EEEecC-----CCChhhHHHHHHHhhccCceEEEccChhHHH
Q 027747 34 DASTVYDNVKQATAFGMR--SVVYVP-----HIQLETVSALSAFCDKASMGCLIAPTLSIGS 88 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p--~ViGTT-----G~~~~~~~~l~~~a~~~~~~vv~spNfSlGv 88 (219)
.++.+.+.++...+.|.. +|+.|. |- .+.++.|.++|+++++.+++=.=++.+.
T Consensus 241 d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~-~~~l~~I~~l~~~~~~~l~vD~a~~~~~ 301 (497)
T 2qma_A 241 DITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGA-IDDLDFIADMAVKHDMWMHVDGAYGGAL 301 (497)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCC-BCCHHHHHHHHHHHTCEEEEEETTGGGG
T ss_pred CHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCC-CCCHHHHHHHHHHcCCEEEEehhhhHHH
Confidence 466777776655555554 565543 33 3567788888888888777655454443
No 451
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=24.24 E-value=1.8e+02 Score=20.19 Aligned_cols=53 Identities=8% Similarity=0.011 Sum_probs=28.4
Q ss_pred ccccCHHHHHhcccCCCCCc-EEEECCChh-hHHHHHHHHHHc-CCcEEEecCCCCh
Q 027747 8 PVMSDLTMVLGSISQSKARA-VVIDFTDAS-TVYDNVKQATAF-GMRSVVYVPHIQL 61 (219)
Q Consensus 8 ~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~-~~~~~~~~~~~~-g~p~ViGTTG~~~ 61 (219)
....+.++++....+ ..+| |++|+..|. .-.+.++...+. .+|+|+=|..-+.
T Consensus 32 ~~~~~~~~al~~~~~-~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~~~ 87 (136)
T 2qzj_A 32 DLAYNCEEAIGKIFS-NKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYINED 87 (136)
T ss_dssp EEESSHHHHHHHHHH-CCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCCH
T ss_pred EEECCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCCCH
Confidence 345566665543222 3578 577888775 223444444433 5677666554443
No 452
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=24.24 E-value=87 Score=22.97 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=34.7
Q ss_pred CCcE---EEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHH----HHHHHhhccCceEEE-ccChhHHHH
Q 027747 25 ARAV---VIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVS----ALSAFCDKASMGCLI-APTLSIGSI 89 (219)
Q Consensus 25 ~~DV---vIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~----~l~~~a~~~~~~vv~-spNfSlGv~ 89 (219)
.+|+ ++|-++++.....+....+.++|+|+-.+=.+..... ..++++++.+.+++. |+--..|+.
T Consensus 81 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 81 KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 3563 5677777666666666667788887766644321110 134444444555543 333334444
No 453
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=24.18 E-value=1.7e+02 Score=23.37 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=34.0
Q ss_pred CCCcEEEECCChhhHHHHHHHHH-HcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHH
Q 027747 24 KARAVVIDFTDASTVYDNVKQAT-AFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 89 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~-~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ 89 (219)
...|+|+ ||+|.++...++.+- ..+++++ +- .+ ...+.+++.+..+.+++..+....
T Consensus 160 ~~~d~v~-ftS~s~v~~~~~~~~~~~~~~~~--aI--G~----~Ta~~l~~~G~~v~va~~~~~e~l 217 (229)
T 3p9z_A 160 KEKSILI-FTAISHAKAFLHYFEFLENYTAI--SI--GN----TTALYLQEQGIPSYIAKKPSLEAC 217 (229)
T ss_dssp CTTCEEE-ECSHHHHHHHHHHSCCCTTCEEE--ES--SH----HHHHHHHHTTCCEEECSSSSHHHH
T ss_pred CCCeEEE-EECHHHHHHHHHHhCcccCCEEE--EE--CH----HHHHHHHHcCCCceeCCCCCHHHH
Confidence 3678666 999999888777542 1122222 22 23 233444445667778888886653
No 454
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=24.11 E-value=1.1e+02 Score=25.23 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=32.7
Q ss_pred CCcEEEECCChhhHHHHHHHHHH-----cCCcEEEecCCCChhhHHHHHHHhhccCc-eEEEccChhHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATA-----FGMRSVVYVPHIQLETVSALSAFCDKASM-GCLIAPTLSIGS 88 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~-----~g~p~ViGTTG~~~~~~~~l~~~a~~~~~-~vv~spNfSlGv 88 (219)
.+|+|+ ||+|+.+...++.+-+ .++++++ ..+ ...+.+++.+. +++++.+.+...
T Consensus 193 ~~d~v~-ftS~s~v~~~~~~~~~~~~~l~~~~~~a----IG~----~Ta~~l~~~G~~~~~va~~~t~~~ 253 (269)
T 3re1_A 193 RLNGLV-VSSGQGFEHLLQLAGDSWPDLAGLPLFV----PSP----RVASLAQAAGARNVIDCRGASAAA 253 (269)
T ss_dssp TCCEEE-CSSHHHHTTTHHHHGGGHHHHTTSCEEE----SSH----HHHHHHHHHTCSSEEECSSSSHHH
T ss_pred CCCEEE-EcCHHHHHHHHHHhhHHHHHHhCCeEEE----ECH----HHHHHHHHCCCCceEECCCCCHHH
Confidence 689877 9999999887776532 2444443 223 23333333444 455677887654
No 455
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=23.99 E-value=1.8e+02 Score=20.09 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=29.8
Q ss_pred cccccCHHHHHhcccC-CCCCc-EEEECCChhh-HHHHHHHHHH--cCCcEEEecCCCCh
Q 027747 7 IPVMSDLTMVLGSISQ-SKARA-VVIDFTDAST-VYDNVKQATA--FGMRSVVYVPHIQL 61 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~-~~~~D-VvIDFS~p~~-~~~~~~~~~~--~g~p~ViGTTG~~~ 61 (219)
+....+.++++....+ ...+| |++|...|+. -.+.++...+ ..+|+|+-|...+.
T Consensus 30 v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~ 89 (143)
T 3jte_A 30 VLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDL 89 (143)
T ss_dssp EEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCH
T ss_pred EEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCH
Confidence 3345566666654321 24688 6788887752 2334444333 25677766654444
No 456
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=23.88 E-value=1.6e+02 Score=20.92 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=32.6
Q ss_pred CCc---EEEECCChhhHHHHHHH---HHH--cCCcEEEecCCCChhh-----HHHHHHHhhccCceEEEcc
Q 027747 25 ARA---VVIDFTDASTVYDNVKQ---ATA--FGMRSVVYVPHIQLET-----VSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 25 ~~D---VvIDFS~p~~~~~~~~~---~~~--~g~p~ViGTTG~~~~~-----~~~l~~~a~~~~~~vv~sp 82 (219)
.+| +++|.+.++.......+ ..+ .++|+++--|=.+..+ .+.+++++++.+.+++..+
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T 1z2a_A 77 GAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTS 147 (168)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECB
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEe
Confidence 456 57888888765443322 222 3777776555444211 3456666666667766543
No 457
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.88 E-value=2e+02 Score=20.48 Aligned_cols=54 Identities=6% Similarity=-0.039 Sum_probs=29.0
Q ss_pred cccccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHHc----CCcEEEecCCCCh
Q 027747 7 IPVMSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATAF----GMRSVVYVPHIQL 61 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~~----g~p~ViGTTG~~~ 61 (219)
+....+.++++....+ ..+| |++|...|.. -.+.++...+. .+|+|+-|.--+.
T Consensus 34 v~~~~~~~~al~~l~~-~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~ 93 (154)
T 3gt7_A 34 TEHVRNGREAVRFLSL-TRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDP 93 (154)
T ss_dssp EEEESSHHHHHHHHTT-CCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCSH
T ss_pred EEEeCCHHHHHHHHHh-CCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCCh
Confidence 3345566666654322 3578 5778877652 23444444442 4566665543333
No 458
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=23.82 E-value=88 Score=26.63 Aligned_cols=59 Identities=15% Similarity=-0.003 Sum_probs=39.6
Q ss_pred CHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccC
Q 027747 12 DLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 12 ~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spN 83 (219)
++.+++. .+|++|--|..+..--.+-.|+..|+|+|.-..|... +.......++++.++
T Consensus 318 ~~~~~~~------~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~-------e~i~~~~~g~~~~~~ 376 (438)
T 3c48_A 318 ELVAVYR------AADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLP-------IAVAEGETGLLVDGH 376 (438)
T ss_dssp HHHHHHH------HCSEEEECCSCCSSCHHHHHHHHTTCCEEEESCTTHH-------HHSCBTTTEEEESSC
T ss_pred HHHHHHH------hCCEEEECccccCCchHHHHHHHcCCCEEecCCCChh-------HHhhCCCcEEECCCC
Confidence 4556665 5899988887777666778888999998876655432 233334456666653
No 459
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=23.78 E-value=39 Score=25.04 Aligned_cols=51 Identities=10% Similarity=0.031 Sum_probs=33.6
Q ss_pred ccCHHHHHhcccCCCCCc-EEEECCChhhH-HHHHHHHHHcCCcEEEecCCCChh
Q 027747 10 MSDLTMVLGSISQSKARA-VVIDFTDASTV-YDNVKQATAFGMRSVVYVPHIQLE 62 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~D-VvIDFS~p~~~-~~~~~~~~~~g~p~ViGTTG~~~~ 62 (219)
.+|-++++....+ ..|| |+.|..-|..- .+.++...+.++|+|+ .||+++.
T Consensus 39 a~~g~eAl~~~~~-~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~-lTa~~~~ 91 (123)
T 2lpm_A 39 ASRMQEALDIARK-GQFDIAIIDVNLDGEPSYPVADILAERNVPFIF-ATGYGSK 91 (123)
T ss_dssp SCCHHHHHHHHHH-CCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCC-BCTTCTT
T ss_pred ECCHHHHHHHHHh-CCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEE-EecCccH
Confidence 3577776654322 4689 68899988532 4556666678899665 5778754
No 460
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=23.73 E-value=1.9e+02 Score=20.13 Aligned_cols=65 Identities=12% Similarity=0.259 Sum_probs=41.7
Q ss_pred CCCcEEEECCChhhHHHHH-HHHHHcCC-cEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHHHHHHH
Q 027747 24 KARAVVIDFTDASTVYDNV-KQATAFGM-RSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSILLQQA 94 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~-~~~~~~g~-p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ll~~~ 94 (219)
..+|+||-.+..+.....+ ..+.+.+. .+|+-+++... .+.++ +.++..+++|....+-.+...+
T Consensus 68 ~~~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~--~~~l~----~~g~~~v~~p~~~~~~~~~~~~ 134 (140)
T 1lss_A 68 EDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEY--KDVFE----RLGVDVVVSPELIAANYIEKLI 134 (140)
T ss_dssp TTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTH--HHHHH----HTTCSEEECHHHHHHHHHHHHH
T ss_pred ccCCEEEEeeCCchHHHHHHHHHHHcCCCEEEEEecCHhH--HHHHH----HcCCCEEECHHHHHHHHHHHHh
Confidence 3689988887665544433 44555553 56666666543 23443 3567789999999888776654
No 461
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=23.71 E-value=1.7e+02 Score=26.40 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=16.9
Q ss_pred CCc-EEEECCC--hhhHHHHHHHHHHc--CCcEEEecCCCChhh
Q 027747 25 ARA-VVIDFTD--ASTVYDNVKQATAF--GMRSVVYVPHIQLET 63 (219)
Q Consensus 25 ~~D-VvIDFS~--p~~~~~~~~~~~~~--g~p~ViGTTG~~~~~ 63 (219)
.+| ++|++++ +....+.++...+. ++|+++| ++.+.++
T Consensus 249 Gvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g-~~~t~e~ 291 (494)
T 1vrd_A 249 GVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAG-NVATPEG 291 (494)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEE-EECSHHH
T ss_pred CCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeC-CcCCHHH
Confidence 345 3444442 33344444444444 5555555 2344443
No 462
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=23.70 E-value=1.1e+02 Score=26.39 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=65.1
Q ss_pred HHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCC-CChh-----------------hHHHHHHHhhcc
Q 027747 13 LTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPH-IQLE-----------------TVSALSAFCDKA 74 (219)
Q Consensus 13 l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG-~~~~-----------------~~~~l~~~a~~~ 74 (219)
++.+|+. .+|+|=|.|-- .-.+.++.+.++|.|+|+-... ..+. .+.+.-+.+.+.
T Consensus 116 a~aAl~a-----Ga~iINdVsg~-~d~~m~~v~a~~~~~vVlmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~ 189 (294)
T 2dqw_A 116 AEEALKL-----GAHLLNDVTGL-RDERMVALAARHGVAAVVMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSA 189 (294)
T ss_dssp HHHHHHH-----TCSEEECSSCS-CCHHHHHHHHHHTCEEEEECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----CCCEEEECCCC-CChHHHHHHHHhCCCEEEEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHC
Confidence 3455553 68988898865 5567888999999999997763 1111 122233345556
Q ss_pred Cce-EEEccChhHHHHHH--HHHHHHHhhhc-CCeEEEecCCCC------------CCCCcHHHHHHHHHHHh
Q 027747 75 SMG-CLIAPTLSIGSILL--QQAAISASFHY-KNVEIVESRPNA------------RDFPSPDATQIANNLSN 131 (219)
Q Consensus 75 ~~~-vv~spNfSlGv~ll--~~~~~~aa~~~-~dieIiE~Hh~K------------~DaPSGTA~~la~~i~~ 131 (219)
+++ +++=|.|..|-++- ..+++.+.++. ++.-++=-.-|| .|..-||+...+-++..
T Consensus 190 Gi~~IilDPG~Gf~kt~~~n~~ll~~l~~~~~~g~Pvl~G~Srksfig~l~g~p~~~~R~~~t~a~~~~a~~~ 262 (294)
T 2dqw_A 190 GVPQVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVLVGLSRKRTIGELSGVEDPAQRVHGSVAAHLFAVMK 262 (294)
T ss_dssp TCSCEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHHTCCSGGGCHHHHHHHHHHHHHT
T ss_pred CCCcEEEcCCCCcccCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhhhhcCCCchhhhHHHHHHHHHHHHHc
Confidence 664 88889876655443 22333333221 344333333344 13445776666666544
No 463
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=23.67 E-value=1.3e+02 Score=26.57 Aligned_cols=16 Identities=19% Similarity=0.291 Sum_probs=8.0
Q ss_pred HHHHHHHHHcCCcEEE
Q 027747 39 YDNVKQATAFGMRSVV 54 (219)
Q Consensus 39 ~~~~~~~~~~g~p~Vi 54 (219)
.+.++.+++.|..+|+
T Consensus 107 ~e~a~~l~eaGad~I~ 122 (361)
T 3khj_A 107 IERAKLLVEAGVDVIV 122 (361)
T ss_dssp HHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHcCcCeEE
Confidence 4445555555555443
No 464
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3
Probab=23.59 E-value=1.4e+02 Score=24.37 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=24.8
Q ss_pred EEEE-----CCChhhHHHHHHHHHHcCCcEEEecCCCC
Q 027747 28 VVID-----FTDASTVYDNVKQATAFGMRSVVYVPHIQ 60 (219)
Q Consensus 28 VvID-----FS~p~~~~~~~~~~~~~g~p~ViGTTG~~ 60 (219)
++++ .++++.+.+.++.+.+.++|+++|=-|..
T Consensus 187 ~~~s~H~Y~~~~~~~~~~~~~~~~~~~~Pv~igEfG~~ 224 (291)
T 1egz_A 187 IAYTLHFYAGTHGESLRNKARQALNNGIALFVTEWGTV 224 (291)
T ss_dssp EEEEEEEETTTCCHHHHHHHHHHHHTTCCEEEEEEESS
T ss_pred EEEEEEecCCCChHHHHHHHHHHHHCCCcEEEecccCc
Confidence 5666 35566777788888889999999876663
No 465
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=23.59 E-value=1.9e+02 Score=25.59 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=37.3
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECC-Chhh---------HHHHHHH---HHHc---CCcEEEecCCCChhh-HHHHHH
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFT-DAST---------VYDNVKQ---ATAF---GMRSVVYVPHIQLET-VSALSA 69 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS-~p~~---------~~~~~~~---~~~~---g~p~ViGTTG~~~~~-~~~l~~ 69 (219)
+..++++++++. .+|+||=.. .|.. +.+.++. +++. +..+|.-+| ..... .+.+.+
T Consensus 64 l~~t~~~~~~~~------~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~St-v~~g~t~~~l~~ 136 (436)
T 1mv8_A 64 LSGTTDFKKAVL------DSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRST-VLPGTVNNVVIP 136 (436)
T ss_dssp EEEESCHHHHHH------TCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSC-CCTTHHHHTHHH
T ss_pred eEEeCCHHHHhc------cCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCC-cCCCchHHHHHH
Confidence 556778887775 689877554 3332 4444433 3344 444544333 22222 233433
Q ss_pred Hhhc-------cCceEEEccChh
Q 027747 70 FCDK-------ASMGCLIAPTLS 85 (219)
Q Consensus 70 ~a~~-------~~~~vv~spNfS 85 (219)
..++ ...+++++|.|.
T Consensus 137 ~l~~~~g~~~~~~~~v~~~Pe~~ 159 (436)
T 1mv8_A 137 LIEDCSGKKAGVDFGVGTNPEFL 159 (436)
T ss_dssp HHHHHHSCCBTTTBEEEECCCCC
T ss_pred HHHHhcCcccCCcEEEEECcccc
Confidence 3222 236788888764
No 466
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=23.57 E-value=94 Score=21.62 Aligned_cols=50 Identities=10% Similarity=0.149 Sum_probs=26.2
Q ss_pred cccCHHHHHhcccCCCCCc-EEEECCChh-hHHHHHHHHHH----cCCcEEEecCCC
Q 027747 9 VMSDLTMVLGSISQSKARA-VVIDFTDAS-TVYDNVKQATA----FGMRSVVYVPHI 59 (219)
Q Consensus 9 v~~~l~~~l~~~~~~~~~D-VvIDFS~p~-~~~~~~~~~~~----~g~p~ViGTTG~ 59 (219)
...+.++++....+ ..+| |++|...|+ .-.+.++...+ ..+|+|+-|...
T Consensus 36 ~~~~~~~a~~~l~~-~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 91 (142)
T 3cg4_A 36 SADSGGQCIDLLKK-GFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKN 91 (142)
T ss_dssp EESSHHHHHHHHHT-CCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTT
T ss_pred EeCCHHHHHHHHHh-cCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCC
Confidence 35566666553322 3477 567877764 23445555544 245555554433
No 467
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=23.57 E-value=1.8e+02 Score=19.81 Aligned_cols=54 Identities=9% Similarity=0.069 Sum_probs=31.8
Q ss_pred cccccCHHHHHhcccCCCCCc-EEEECCChhh-HHHHHHHHHHc----CCcEEEecCCCCh
Q 027747 7 IPVMSDLTMVLGSISQSKARA-VVIDFTDAST-VYDNVKQATAF----GMRSVVYVPHIQL 61 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~D-VvIDFS~p~~-~~~~~~~~~~~----g~p~ViGTTG~~~ 61 (219)
+....+.++++....+ ..|| |++|+..|.. -.+.++...+. .+|+|+=|.-.+.
T Consensus 29 v~~~~~~~~al~~l~~-~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~ 88 (122)
T 3gl9_A 29 VIEAENGQIALEKLSE-FTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGE 88 (122)
T ss_dssp EEEESSHHHHHHHHTT-BCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSH
T ss_pred EEEeCCHHHHHHHHHh-cCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCch
Confidence 3345677777664422 4688 6889998863 24455554443 5677766554443
No 468
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=23.53 E-value=1.5e+02 Score=21.74 Aligned_cols=38 Identities=13% Similarity=0.071 Sum_probs=21.1
Q ss_pred HHHHHHH---HcCCcEEEecCCCChhhHHHHHHHhhccCce
Q 027747 40 DNVKQAT---AFGMRSVVYVPHIQLETVSALSAFCDKASMG 77 (219)
Q Consensus 40 ~~~~~~~---~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~ 77 (219)
+.++.++ +.|..+|+-.+.++..+.+.+.+++++.+.+
T Consensus 66 ~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~ 106 (181)
T 1ly1_A 66 DTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWK 106 (181)
T ss_dssp HHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCE
T ss_pred HHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 3445555 5666666665556655555566555444433
No 469
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=23.46 E-value=1.9e+02 Score=23.56 Aligned_cols=20 Identities=10% Similarity=-0.127 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHcCCcEEEe
Q 027747 36 STVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViG 55 (219)
....+.++.|.+.|+++++|
T Consensus 97 ~~d~~v~~~ar~~g~~~i~G 116 (224)
T 1vhc_A 97 GLNPKIVKLCQDLNFPITPG 116 (224)
T ss_dssp SCCHHHHHHHHHTTCCEECE
T ss_pred CCCHHHHHHHHHhCCCEEec
Confidence 33344455555555555555
No 470
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=23.45 E-value=1.8e+02 Score=19.89 Aligned_cols=51 Identities=4% Similarity=0.055 Sum_probs=26.1
Q ss_pred ccCHHHHHhcccCCCCCc-EEEECCCh-h-hHHHHHHHHHH-cCCcEEEecCCCCh
Q 027747 10 MSDLTMVLGSISQSKARA-VVIDFTDA-S-TVYDNVKQATA-FGMRSVVYVPHIQL 61 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~D-VvIDFS~p-~-~~~~~~~~~~~-~g~p~ViGTTG~~~ 61 (219)
..+.++++....+ ..+| |++|...| + .-.+.++...+ ..+|+|+-|...+.
T Consensus 40 ~~~~~~a~~~~~~-~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~~ 94 (140)
T 3cg0_A 40 FDNGEEAVRCAPD-LRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQDV 94 (140)
T ss_dssp ESSHHHHHHHHHH-HCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCCH
T ss_pred ECCHHHHHHHHHh-CCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCCH
Confidence 4455555543211 2477 57787765 1 22333333332 46777766654443
No 471
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=23.41 E-value=2.7e+02 Score=22.61 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=25.2
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
..|+|.++. .+||+||-.+.. .-.+..+...+.|+|+|+-
T Consensus 49 ~~n~E~i~~-----l~PDLIi~~~~~-~~~~~~~~L~~~gipvv~~ 88 (283)
T 2r79_A 49 QLAAEGVLA-----LRPDILIGTEEM-GPPPVLKQLEGAGVRVETL 88 (283)
T ss_dssp GCCHHHHHT-----TCCSEEEECTTC-CCHHHHHHHHHTTCCEEEC
T ss_pred CCCHHHHHh-----cCCCEEEEeCcc-CcHHHHHHHHHcCCcEEEe
Confidence 348888887 479988864321 0123445556788888764
No 472
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=23.37 E-value=1.5e+02 Score=25.27 Aligned_cols=46 Identities=13% Similarity=-0.004 Sum_probs=25.2
Q ss_pred hhhHHHHHHHHHHcCCc--EEEecCC----CChhhHHHHHHH-hh--ccCceEEE
Q 027747 35 ASTVYDNVKQATAFGMR--SVVYVPH----IQLETVSALSAF-CD--KASMGCLI 80 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p--~ViGTTG----~~~~~~~~l~~~-a~--~~~~~vv~ 80 (219)
.+++..++++.++.|+. +|.|||| ++.++..++-+. ++ ..++|++.
T Consensus 32 ~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVia 86 (301)
T 1xky_A 32 FAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIA 86 (301)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEe
Confidence 45667777777777764 2457777 555554443322 21 13466654
No 473
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=23.37 E-value=1.5e+02 Score=24.38 Aligned_cols=45 Identities=2% Similarity=0.120 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCcEEEec--------CCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 38 VYDNVKQATAFGMRSVVYV--------PHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 38 ~~~~~~~~~~~g~p~ViGT--------TG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
+.+.++.+.+.|+.-++-| +|++.+-++.+.+.. .++|++.|.=.
T Consensus 153 ~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~~l~~~l~~~~--~~ipviasGGv 205 (243)
T 4gj1_A 153 LMEVLDFYSNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIF--PNICIQASGGV 205 (243)
T ss_dssp HHHHHHHHHTTTCCEEEEEETTC-----CCCHHHHHHHHHHC--TTSEEEEESCC
T ss_pred HHHHHHHHhhcCCcEEEeeeecccccccCCCHHHHHHHHHhc--CCCCEEEEcCC
Confidence 4566677777777777666 677665555554443 45777776543
No 474
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=23.30 E-value=1.3e+02 Score=25.13 Aligned_cols=10 Identities=20% Similarity=0.341 Sum_probs=4.3
Q ss_pred EEccChhHHH
Q 027747 79 LIAPTLSIGS 88 (219)
Q Consensus 79 v~spNfSlGv 88 (219)
+..||..-|.
T Consensus 185 ~~~p~nptG~ 194 (407)
T 3nra_A 185 FSNPNNPAGV 194 (407)
T ss_dssp EESSCTTTCC
T ss_pred EcCCCCCCCc
Confidence 3344444443
No 475
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=23.20 E-value=1.2e+02 Score=26.09 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=33.4
Q ss_pred EEECCChhhHHHHHHHHHHcCCcEEEe-----cCCC---ChhhHHHHHHHhhccCceEEE
Q 027747 29 VIDFTDASTVYDNVKQATAFGMRSVVY-----VPHI---QLETVSALSAFCDKASMGCLI 80 (219)
Q Consensus 29 vIDFS~p~~~~~~~~~~~~~g~p~ViG-----TTG~---~~~~~~~l~~~a~~~~~~vv~ 80 (219)
.+.|-.++.+.+.++.. ..++.+|+. .||. +++.++.|.++|+++++.++.
T Consensus 184 ~~~~~d~~~le~~l~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~ 242 (434)
T 2epj_A 184 VTPYNDVEALERVFAEY-GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLIL 242 (434)
T ss_dssp EEETTCHHHHHHHHHHH-GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred ecCCCCHHHHHHHHHhC-CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 45666666665555421 124555553 4673 567789999999999988876
No 476
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=23.19 E-value=1.4e+02 Score=26.30 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCc
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASM 76 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~ 76 (219)
-..+...+..+++.|.++|+-+|+++..+.+.+.+++++.+.
T Consensus 295 ~~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~ 336 (416)
T 3zvl_A 295 WQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGV 336 (416)
T ss_dssp HHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 344566777788889999999898888887777777665553
No 477
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=23.18 E-value=1.8e+02 Score=23.39 Aligned_cols=40 Identities=5% Similarity=0.047 Sum_probs=28.4
Q ss_pred HHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceE
Q 027747 39 YDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGC 78 (219)
Q Consensus 39 ~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~v 78 (219)
...++.+++.|.++|+-+++....+...+.+.+++.+.++
T Consensus 99 ~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v 138 (253)
T 2p5t_B 99 ESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEV 138 (253)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcE
Confidence 4556667788889999988877766666666655566654
No 478
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=23.05 E-value=62 Score=27.92 Aligned_cols=51 Identities=6% Similarity=-0.069 Sum_probs=31.4
Q ss_pred cccccCHHHHHhcccCCCCCcEEEECCCh--hhHHHHHHH---HHHcCCcEEEecCCCChhh
Q 027747 7 IPVMSDLTMVLGSISQSKARAVVIDFTDA--STVYDNVKQ---ATAFGMRSVVYVPHIQLET 63 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~~~~~DVvIDFS~p--~~~~~~~~~---~~~~g~p~ViGTTG~~~~~ 63 (219)
+..++|+++++. .+|+||.-.-. +.....++. .+..+.-++.-|+|++..+
T Consensus 75 i~~~~~~~eav~------~aDlVieavpe~~~~k~~v~~~l~~~~~~~~Ii~s~tS~i~~~~ 130 (319)
T 2dpo_A 75 ISSCTNLAEAVE------GVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSK 130 (319)
T ss_dssp EEEECCHHHHTT------TEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHH
T ss_pred eEEeCCHHHHHh------cCCEEEEeccCCHHHHHHHHHHHHhhCCCCeEEEEeCCChHHHH
Confidence 456788888875 69999976532 222333333 2334555666888888743
No 479
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=23.05 E-value=1.1e+02 Score=27.79 Aligned_cols=36 Identities=17% Similarity=0.023 Sum_probs=31.7
Q ss_pred CCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCC
Q 027747 24 KARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHI 59 (219)
Q Consensus 24 ~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~ 59 (219)
..|.+||-=++.+-+...+++|.++++|+++=.+|.
T Consensus 51 ~~P~~vv~p~~~~~v~~~v~~a~~~~~~~~~r~gGh 86 (500)
T 3tsh_A 51 VKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRSGGH 86 (500)
T ss_dssp CCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCC
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCc
Confidence 358999999999999999999999999999955554
No 480
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=23.02 E-value=2.7e+02 Score=25.38 Aligned_cols=79 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHhcccCCCCCc-EEEECCChh--hHHHHHHHHHHc--CCcEEEe--------------------------------
Q 027747 13 LTMVLGSISQSKARA-VVIDFTDAS--TVYDNVKQATAF--GMRSVVY-------------------------------- 55 (219)
Q Consensus 13 l~~~l~~~~~~~~~D-VvIDFS~p~--~~~~~~~~~~~~--g~p~ViG-------------------------------- 55 (219)
.+.++++ .+| ++||.+++. .+.+.++...+. ++|++.|
T Consensus 234 a~~l~~a-----G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~ 308 (490)
T 4avf_A 234 VAALVAA-----GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTTR 308 (490)
T ss_dssp HHHHHHT-----TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHH
T ss_pred HHHHhhc-----ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCcc
Q ss_pred -cCCCChhhHHHHHHHhh---ccCceEEEccChhHHHHHHHHHHH
Q 027747 56 -VPHIQLETVSALSAFCD---KASMGCLIAPTLSIGSILLQQAAI 96 (219)
Q Consensus 56 -TTG~~~~~~~~l~~~a~---~~~~~vv~spNfSlGv~ll~~~~~ 96 (219)
.+|+...+...+.++++ +.++|++-+.-.+-+-.+...+..
T Consensus 309 ~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~ 353 (490)
T 4avf_A 309 IVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVA 353 (490)
T ss_dssp HHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHH
T ss_pred ccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHc
No 481
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=22.99 E-value=2.9e+02 Score=22.01 Aligned_cols=30 Identities=7% Similarity=-0.054 Sum_probs=15.1
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=+.... ..+.++.+.+.|+|+|.-
T Consensus 72 ~vdgiIi~~~~~-~~~~~~~l~~~~iPvV~~ 101 (289)
T 2fep_A 72 QVDGIVFMGGNI-TDEHVAEFKRSPVPIVLA 101 (289)
T ss_dssp TCSEEEECCSCC-CHHHHHHHHHSSSCEEEE
T ss_pred CCCEEEEecCCC-CHHHHHHHHhcCCCEEEE
Confidence 567555333211 133455555677776653
No 482
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima}
Probab=22.97 E-value=1.2e+02 Score=24.65 Aligned_cols=56 Identities=14% Similarity=0.001 Sum_probs=30.6
Q ss_pred cccccCHHHHHhcccC-CCCCcEEEECCC--------hhhHHHHHHHHHHcCCcEEEec-CCCChhh
Q 027747 7 IPVMSDLTMVLGSISQ-SKARAVVIDFTD--------ASTVYDNVKQATAFGMRSVVYV-PHIQLET 63 (219)
Q Consensus 7 ~~v~~~l~~~l~~~~~-~~~~DVvIDFS~--------p~~~~~~~~~~~~~g~p~ViGT-TG~~~~~ 63 (219)
+++.++|+++++.+.+ ....-.+|=-|. |..+.+.+. ..+..+.+|-|| .|++.|+
T Consensus 85 a~vv~sL~eAl~~~~~~~g~~p~vvaTsAr~~~~~i~~~el~~~i~-~~~~pvalvFG~~~GLtnee 150 (192)
T 3dcm_X 85 VKLKSYLEDVLEDIESVEGERPLIFFTSAKKRENDISFEEGRRIII-ETEKPVLILLGTGWGLPDEI 150 (192)
T ss_dssp EEEESSHHHHHHHHHHHHSSCCEEEECCSSCCSSCBCHHHHHHHHH-HCCSCEEEEECCTTCCCHHH
T ss_pred CeEECCHHHHHHHHHhhcCCccEEEEeCCCcCCCCCCHHHHHHHHH-hCCCCEEEEECCCCCCCHHH
Confidence 5678899999974320 001116665552 222222221 234567899998 3677754
No 483
>1agx_A Glutaminase-asparaginase; bacterial amidohydrolase; 2.90A {Acinetobacter glutaminasificans} SCOP: c.88.1.1
Probab=22.96 E-value=1.1e+02 Score=26.77 Aligned_cols=64 Identities=11% Similarity=0.080 Sum_probs=46.2
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcC-CcEEEecCC---CChhhHHHHHHHhhccCceEEEccChhHHH
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFG-MRSVVYVPH---IQLETVSALSAFCDKASMGCLIAPTLSIGS 88 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g-~p~ViGTTG---~~~~~~~~l~~~a~~~~~~vv~spNfSlGv 88 (219)
.++|.|=+..|..-.+.++.+++.| .-+|+-++| ..++-.+.|+++..++++|||.++--.-|.
T Consensus 215 ~~~V~il~~~pG~~~~~l~~~~~~g~~GiVle~~G~Gn~p~~~~~~l~~a~~~~gi~VV~~Sr~~~G~ 282 (331)
T 1agx_A 215 LPGVQIVYGSDNMMPDAYQAFAKAGVKAIIHAGTGNGSMANYLVPEVRKLHDEQGLQIVRSSRVAQGF 282 (331)
T ss_dssp CCCEEEEECCSSCCTHHHHHHHTTTCSEEEEEEBTTTBCCTTHHHHHHHHHHTTCCEEEEEESSCSSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHhCCCCEEEEeeECCCCCCHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 4678887888888888888888764 568888887 444556778877634789999987644443
No 484
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=22.80 E-value=2.9e+02 Score=22.03 Aligned_cols=32 Identities=3% Similarity=-0.182 Sum_probs=18.4
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.+|.+|=+.... ..+.++.+.+.|+|+|.--.
T Consensus 65 ~vdGiIi~~~~~-~~~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 65 RVDALIVAHTQP-EDFRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp CCSEEEECSCCS-SCHHHHHHHHTTCCEEEESC
T ss_pred CCCEEEEeCCCC-ChHHHHHHHhCCCCEEEECC
Confidence 577555333221 12566777778888876433
No 485
>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18
Probab=22.76 E-value=1e+02 Score=22.33 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecC
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.++...+.++.+.+.|+++++.|.
T Consensus 25 ~~~~~~~~l~~l~~~Gi~~~iaTG 48 (126)
T 1xpj_A 25 PRLDVIEQLREYHQLGFEIVISTA 48 (126)
T ss_dssp BCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeC
Confidence 346678889999999999999874
No 486
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=22.72 E-value=2.2e+02 Score=22.89 Aligned_cols=30 Identities=10% Similarity=-0.126 Sum_probs=14.7
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
.+|.+|=+... ...+.++.+.+.|+|+|.-
T Consensus 68 ~vdGiI~~~~~-~~~~~~~~l~~~~iPvV~i 97 (295)
T 3hcw_A 68 MVDAFILLYSK-ENDPIKQMLIDESMPFIVI 97 (295)
T ss_dssp CCSEEEESCCC-TTCHHHHHHHHTTCCEEEE
T ss_pred CcCEEEEcCcc-cChHHHHHHHhCCCCEEEE
Confidence 56644433211 1124455566667776654
No 487
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=22.67 E-value=94 Score=28.16 Aligned_cols=46 Identities=17% Similarity=0.218 Sum_probs=31.6
Q ss_pred ChhhHHHHHHHHHHcCCcEEEecCCCChh----hHHHHHHHhhccCceEE
Q 027747 34 DASTVYDNVKQATAFGMRSVVYVPHIQLE----TVSALSAFCDKASMGCL 79 (219)
Q Consensus 34 ~p~~~~~~~~~~~~~g~p~ViGTTG~~~~----~~~~l~~~a~~~~~~vv 79 (219)
+++.+.+.++.+.+.++|+++|=-|.... ..+.+.+++++++++.+
T Consensus 205 ~~~~i~~~~~~~~~~g~Pv~igEfG~~~~~~~~~~~~~~~~~~~~~igw~ 254 (464)
T 1wky_A 205 NASQVRTNIDRVLNQDLALVIGEFGHRHTNGDVDESTIMSYSEQRGVGWL 254 (464)
T ss_dssp SHHHHHHHHHHHHTTTCCEEEEEECSEETTEECCHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccCCCCCCcHHHHHHHHHHHHcCCeEE
Confidence 45677788888888999999998776431 23555556666666644
No 488
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=22.53 E-value=2.7e+02 Score=22.20 Aligned_cols=15 Identities=7% Similarity=0.211 Sum_probs=8.3
Q ss_pred HHHHHHHHcCCcEEE
Q 027747 40 DNVKQATAFGMRSVV 54 (219)
Q Consensus 40 ~~~~~~~~~g~p~Vi 54 (219)
+.++.+.+.|+|+|.
T Consensus 81 ~~~~~l~~~~iPvV~ 95 (290)
T 2rgy_A 81 EDLDELHRMHPKMVF 95 (290)
T ss_dssp HHHHHHHHHCSSEEE
T ss_pred HHHHHHhhcCCCEEE
Confidence 344455556666654
No 489
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=22.50 E-value=88 Score=26.69 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=24.6
Q ss_pred cCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecC
Q 027747 11 SDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVP 57 (219)
Q Consensus 11 ~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTT 57 (219)
.|+|.++.- +||+||-.... -....+...+.|+|+|.=..
T Consensus 87 ~n~E~Ilal-----~PDLIi~~~~~--~~~~~~~~~~~GiPvv~~~~ 126 (346)
T 2etv_A 87 PDLESLITL-----QPDVVFITYVD--RXTAXDIQEXTGIPVVVLSY 126 (346)
T ss_dssp CCHHHHHHH-----CCSEEEEESCC--HHHHHHHHHHHTSCEEEECC
T ss_pred CCHHHHhcC-----CCCEEEEeCCc--cchHHHHHHhcCCcEEEEec
Confidence 488888873 79988754321 12233334456899887543
No 490
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=22.44 E-value=1.7e+02 Score=24.46 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=19.3
Q ss_pred CCcEEEECCChhhHHHHHHHHHHcCCcEEEe
Q 027747 25 ARAVVIDFTDASTVYDNVKQATAFGMRSVVY 55 (219)
Q Consensus 25 ~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViG 55 (219)
+.++||=......+......|.+.++|+|+.
T Consensus 73 ~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~ 103 (374)
T 3n0x_A 73 GADIAIGTSSSAAALADLPVAEENKKILIVE 103 (374)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred CceEEEcCCCcHHHHHHHHHHHHcCccEEEc
Confidence 4666666555566666666666666666653
No 491
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=22.37 E-value=95 Score=26.67 Aligned_cols=29 Identities=14% Similarity=-0.090 Sum_probs=15.0
Q ss_pred HcCCcEEEecCCCChhhHHHHHHHhhccCc
Q 027747 47 AFGMRSVVYVPHIQLETVSALSAFCDKASM 76 (219)
Q Consensus 47 ~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~ 76 (219)
...+|+|.||.. +-++--++-+.+++.+.
T Consensus 79 ~grvpViaGvg~-~t~~ai~la~~A~~~Ga 107 (316)
T 3e96_A 79 HGRALVVAGIGY-ATSTAIELGNAAKAAGA 107 (316)
T ss_dssp TTSSEEEEEECS-SHHHHHHHHHHHHHHTC
T ss_pred CCCCcEEEEeCc-CHHHHHHHHHHHHhcCC
Confidence 346888888854 54443233333333443
No 492
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=22.35 E-value=1.2e+02 Score=24.61 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=46.1
Q ss_pred ccCHHHHHhcccCCCCCcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccChhHHHH
Q 027747 10 MSDLTMVLGSISQSKARAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTLSIGSI 89 (219)
Q Consensus 10 ~~~l~~~l~~~~~~~~~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNfSlGv~ 89 (219)
++++++++. . .+|++|=-+-.....+.++.|.+.|++.|..-+-..-. . ...-+|--.+++..-.
T Consensus 130 ~~dl~ell~----~-~ID~ViIA~Ps~~~~ei~~~l~~aGi~~Ilnf~P~~l~--------v--p~~v~v~~vdl~~~l~ 194 (211)
T 2dt5_A 130 VDLLPQRVP----G-RIEIALLTVPREAAQKAADLLVAAGIKGILNFAPVVLE--------V--PKEVAVENVDFLAGLT 194 (211)
T ss_dssp GGGHHHHST----T-TCCEEEECSCHHHHHHHHHHHHHHTCCEEEECSSSCCC--------C--CTTSEEEECCSHHHHH
T ss_pred HHhHHHHHH----c-CCCEEEEeCCchhHHHHHHHHHHcCCCEEEECCccccc--------C--CCCcEEEecCHHHHHH
Confidence 567888875 2 68877755555555789999999999988774433210 0 1112677777777765
Q ss_pred HHHHHH
Q 027747 90 LLQQAA 95 (219)
Q Consensus 90 ll~~~~ 95 (219)
.|...+
T Consensus 195 ~l~~~~ 200 (211)
T 2dt5_A 195 RLSFAI 200 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
No 493
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=22.23 E-value=1.1e+02 Score=25.62 Aligned_cols=51 Identities=4% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCChhhHHHHHHHHHHcCCcEEEecCCCCh-------hhHHHHHHHhhccCceE-EEccC
Q 027747 32 FTDASTVYDNVKQATAFGMRSVVYVPHIQL-------ETVSALSAFCDKASMGC-LIAPT 83 (219)
Q Consensus 32 FS~p~~~~~~~~~~~~~g~p~ViGTTG~~~-------~~~~~l~~~a~~~~~~v-v~spN 83 (219)
|| .+...+.++.+.+.|++.|..++-.+. +..+.++.+.+..++++ ++.+|
T Consensus 23 ~~-~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~~n 81 (295)
T 1ydn_A 23 VP-TADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLVPN 81 (295)
T ss_dssp CC-HHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEECSS
T ss_pred cC-HHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEeCC
Confidence 44 455677777778888888777652222 24455666655446666 66676
No 494
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=22.20 E-value=1.6e+02 Score=22.56 Aligned_cols=33 Identities=6% Similarity=0.088 Sum_probs=18.0
Q ss_pred CCc-EEEECCChhh-HHHHHHHHHH------cCCcEEEecC
Q 027747 25 ARA-VVIDFTDAST-VYDNVKQATA------FGMRSVVYVP 57 (219)
Q Consensus 25 ~~D-VvIDFS~p~~-~~~~~~~~~~------~g~p~ViGTT 57 (219)
.+| |++|+..|.. -.+.++...+ ..+|+|+-|.
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~ 159 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSG 159 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEES
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEEC
Confidence 577 5778877742 2333443333 3566666544
No 495
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=22.19 E-value=3.2e+02 Score=22.57 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=44.7
Q ss_pred CcEEEECCChhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEccCh
Q 027747 26 RAVVIDFTDASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAPTL 84 (219)
Q Consensus 26 ~DVvIDFS~p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~spNf 84 (219)
..++|=+..-+.+....+...+.|.+.+.=..+.+.++...+.+.-++....++++.+.
T Consensus 251 ~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~ 309 (391)
T 1xti_A 251 NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 309 (391)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCC
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECCh
Confidence 34777677777778888888888999988888888877666555445567888998873
No 496
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=22.10 E-value=1.6e+02 Score=24.82 Aligned_cols=80 Identities=9% Similarity=0.032 Sum_probs=37.2
Q ss_pred HcCCcEEEecCCCChhhHHHHHHHhhccCce--EEEccChhHH-HHHHHHHHHHHhhhcCCeEEEecCC--C-CCCCCcH
Q 027747 47 AFGMRSVVYVPHIQLETVSALSAFCDKASMG--CLIAPTLSIG-SILLQQAAISASFHYKNVEIVESRP--N-ARDFPSP 120 (219)
Q Consensus 47 ~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~--vv~spNfSlG-v~ll~~~~~~aa~~~~dieIiE~Hh--~-K~DaPSG 120 (219)
...+|++.||.+.+-++--++-+.+++.+.- .+..|-|..- -.-+.+..+..++. -++-|+=.|. + +.|.+.-
T Consensus 68 ~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a-~~lPiilYn~P~~tg~~l~~~ 146 (291)
T 3a5f_A 68 NKRIPVIAGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDA-VSTPIIIYNVPGRTGLNITPG 146 (291)
T ss_dssp TTSSCEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGG-CCSCEEEEECHHHHSCCCCHH
T ss_pred CCCCcEEEeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCccccCCCCCHH
Confidence 4468999999887765533343444444433 3344444211 11111111222221 1344443332 3 6666666
Q ss_pred HHHHHHH
Q 027747 121 DATQIAN 127 (219)
Q Consensus 121 TA~~la~ 127 (219)
|-.+|++
T Consensus 147 ~~~~La~ 153 (291)
T 3a5f_A 147 TLKELCE 153 (291)
T ss_dssp HHHHHTT
T ss_pred HHHHHHc
Confidence 6666653
No 497
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=21.99 E-value=1.8e+02 Score=21.58 Aligned_cols=55 Identities=16% Similarity=-0.051 Sum_probs=35.4
Q ss_pred cEEEECCChhhHHHHHHHHHHcCCcE-EEecCCCChhhHH----HHHHHhhccCceEEEccC
Q 027747 27 AVVIDFTDASTVYDNVKQATAFGMRS-VVYVPHIQLETVS----ALSAFCDKASMGCLIAPT 83 (219)
Q Consensus 27 DVvIDFS~p~~~~~~~~~~~~~g~p~-ViGTTG~~~~~~~----~l~~~a~~~~~~vv~spN 83 (219)
+..+-.-. .....+++|.+.+..+ |+|+.|.+.-..- .-+...+....||++.+.
T Consensus 99 ~~~v~~G~--~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~~ 158 (163)
T 1tq8_A 99 EERPIVGA--PVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHT 158 (163)
T ss_dssp EEEEECSS--HHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEECC
T ss_pred EEEEecCC--HHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEeC
Confidence 34455544 4677888888888865 6799887652211 114555667789988764
No 498
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=21.95 E-value=86 Score=29.24 Aligned_cols=47 Identities=9% Similarity=-0.038 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEcc
Q 027747 35 ASTVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIAP 82 (219)
Q Consensus 35 p~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~sp 82 (219)
++.+.+.++...+.+.|+|+.=-|- ....+.|.+++++.++||+-++
T Consensus 199 ~~~i~~~~~~l~~A~rPvIl~G~g~-~~a~~~l~~lae~~~~PV~~t~ 245 (603)
T 4feg_A 199 VQAVTRLTQTLLAAERPLIYYGIGA-RKAGKELEQLSKTLKIPLMSTY 245 (603)
T ss_dssp HHHHHHHHHHHHHCSSEEEEECGGG-TTCHHHHHHHHHHHTCCEEECG
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCc-hhHHHHHHHHHHHHCCCEEEcC
Confidence 4566777777778889988744444 2345789999999999999765
No 499
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=21.91 E-value=1.7e+02 Score=24.67 Aligned_cols=46 Identities=4% Similarity=-0.092 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHcCCcEEEecCCCChhhHHHHHHHhhccCceEEEc
Q 027747 36 STVYDNVKQATAFGMRSVVYVPHIQLETVSALSAFCDKASMGCLIA 81 (219)
Q Consensus 36 ~~~~~~~~~~~~~g~p~ViGTTG~~~~~~~~l~~~a~~~~~~vv~s 81 (219)
..+.+.+..+....+|+|+||.+.+-++--++-+.+++.+.-.+..
T Consensus 57 ~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gadavlv 102 (292)
T 2ojp_A 57 ADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT 102 (292)
T ss_dssp HHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCSEEEE
T ss_pred HHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCCEEEE
No 500
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=21.89 E-value=2e+02 Score=20.23 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred cccCHHHHHhcccCCCCCc-EEEECCChh-hHHHHHHHHHHc--CCcEEEecCCCChhhHHHHHHH
Q 027747 9 VMSDLTMVLGSISQSKARA-VVIDFTDAS-TVYDNVKQATAF--GMRSVVYVPHIQLETVSALSAF 70 (219)
Q Consensus 9 v~~~l~~~l~~~~~~~~~D-VvIDFS~p~-~~~~~~~~~~~~--g~p~ViGTTG~~~~~~~~l~~~ 70 (219)
...+.++++....+.. +| |++|...|+ .-.+.++...+. .+|+|+-|..-+.+......++
T Consensus 36 ~~~~~~~a~~~l~~~~-~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~~~ 100 (153)
T 3cz5_A 36 EAADAGEAYRLYRETT-PDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAFALKAFEA 100 (153)
T ss_dssp EESSHHHHHHHHHTTC-CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCSHHHHHHHHHT
T ss_pred EeCCHHHHHHHHhcCC-CCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCCHHHHHHHHHC
Done!