BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027748
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 60/140 (42%), Gaps = 32/140 (22%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+EF
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--------DGQKFDSSKDRNDPFEFV 152
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKR 194
+GG + E V +GMKVGG R + +PP+ GY +
Sbjct: 153 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGARG 189
Query: 195 MNE-IPPGATFELNIELLQV 213
IPP AT +ELL V
Sbjct: 190 AGGVIPPNATLVFEVELLDV 209
>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ3|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation M61h From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 32/140 (22%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 5 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--------DGQKFDSSKDRNDPFAFV 56
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKR 194
+GG + E V +GMKVGG R + +PP+ GY +
Sbjct: 57 LGGGHVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGARG 93
Query: 195 MNE-IPPGATFELNIELLQV 213
IPP AT +ELL V
Sbjct: 94 AGGVIPPNATLVFEVELLDV 113
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 32/140 (22%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--------DGQKFGSSKDRNDPFAFV 152
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKR 194
+GG + E V +GMKVGG R + +PP+ GY +
Sbjct: 153 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGARG 189
Query: 195 MNE-IPPGATFELNIELLQV 213
IPP AT +ELL V
Sbjct: 190 AGGVIPPNATLVFEVELLDV 209
>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From
Burkholderia Pseudomallei
Length = 133
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 32/140 (22%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 25 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--------DGQKFDSSKDRNDPFAFV 76
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKR 194
+GG + E V +GMKVGG R + +PP+ GY +
Sbjct: 77 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGARG 113
Query: 195 MNE-IPPGATFELNIELLQV 213
IPP AT +ELL V
Sbjct: 114 AGGVIPPNATLVFEVELLDV 133
>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
pdb|2KO7|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
Cycloheximide-N- Ethylethanoate
pdb|2L2S|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei Complexed With
1-{[(4-Methylphenyl) Thio]acetyl}piperidine
Length = 117
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 32/140 (22%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 9 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--------DGQKFDSSKDRNDPFAFV 60
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKR 194
+GG + E V +GMKVGG R + +PP+ GY +
Sbjct: 61 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGARG 97
Query: 195 MNE-IPPGATFELNIELLQV 213
IPP AT +ELL V
Sbjct: 98 AGGVIPPNATLVFEVELLDV 117
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 32/140 (22%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--------DGQKFDSSKDRNDPFAFV 152
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKK- 193
+GG + E V +GMKVGG R + +PP+ GY +
Sbjct: 153 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGARG 189
Query: 194 RMNEIPPGATFELNIELLQV 213
IPP AT +ELL V
Sbjct: 190 AAGVIPPNATLVFEVELLDV 209
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 32/140 (22%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--------DGQKFDSSKDRNDPFAFV 152
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKR 194
+GG + E V +GMKVGG R + +PP+ GY +
Sbjct: 153 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGARG 189
Query: 195 MNE-IPPGATFELNIELLQV 213
IPP AT +ELL V
Sbjct: 190 AGGVIPPNATLVFEVELLDV 209
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 32/140 (22%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 101 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--------DGQKFDSSKDRNDPFAFV 152
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKR 194
+GG + E V +GMKVGG R + +PP+ GY +
Sbjct: 153 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGARG 189
Query: 195 MNE-IPPGATFELNIELLQV 213
IPP AT +ELL V
Sbjct: 190 AGGVIPPNATLVFEVELLDV 209
>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
pdb|4DZ2|B Chain B, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
With Surface Mutation R92g From Burkholderia
Pseudomallei Complexed With Fk506
Length = 113
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 32/140 (22%)
Query: 75 TTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFK 134
TT GLKY D+ EG G A+ G TV VH+ + + ++ +P+ F
Sbjct: 5 TTESGLKYEDLTEGSGAEARAGQTVSVHYTGWLT--------DGQKFDSSKDRNDPFAFV 56
Query: 135 VGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKR 194
+GG + E V +GMKVGG R + +PP+ GY
Sbjct: 57 LGGGMVIKGWDEGV-----------------------QGMKVGGVRRLTIPPQLGYGAGG 93
Query: 195 MNE-IPPGATFELNIELLQV 213
IPP AT +ELL V
Sbjct: 94 AGGVIPPNATLVFEVELLDV 113
>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|B Chain B, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|C Chain C, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|D Chain D, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|E Chain E, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|F Chain F, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|G Chain G, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|H Chain H, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|I Chain I, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
pdb|4DIP|J Chain J, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans
Isomerase Fkbp14
Length = 125
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 172 EGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVK 214
+GM VG KR +I+PP GY K+ +IPP +T NI+LL+++
Sbjct: 80 KGMCVGEKRKLIIPPALGYGKEGKGKIPPESTLIFNIDLLEIR 122
>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13
pdb|1U79|B Chain B, Crystal Structure Of Atfkbp13
pdb|1U79|C Chain C, Crystal Structure Of Atfkbp13
pdb|1U79|D Chain D, Crystal Structure Of Atfkbp13
pdb|1U79|E Chain E, Crystal Structure Of Atfkbp13
pdb|1Y0O|A Chain A, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|B Chain B, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|C Chain C, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|D Chain D, Crystal Structure Of Reduced Atfkbp13
pdb|1Y0O|E Chain E, Crystal Structure Of Reduced Atfkbp13
Length = 129
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 59/148 (39%), Gaps = 35/148 (23%)
Query: 72 DYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSRES-KLLAGNRSIAEP 130
++ + GL + D V G GP A KG ++ H+ V E+ K+ + + +P
Sbjct: 6 EFSVSPSGLAFCDKVVGYGPEAVKGQLIKAHY---------VGKLENGKVFDSSYNRGKP 56
Query: 131 YEFKVGGPPGKERKREFVDNQN-GLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAG 189
F++G E + + G+ + P M GGKRT+ +PPE
Sbjct: 57 LTFRIG-------VGEVIKGWDQGILGSDGIPP-----------MLTGGKRTLRIPPELA 98
Query: 190 YDKKRMN------EIPPGATFELNIELL 211
Y + IPP + +IE +
Sbjct: 99 YGDRGAGCKGGSCLIPPASVLLFDIEYI 126
>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli
Length = 245
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 182 VIVPPEAGYDKKRMNEIPPGATFELNIELLQVKP 215
+++PPE Y K + IPP +T ++ELL VKP
Sbjct: 192 LVIPPELAYGKAGVPGIPPNSTLVFDVELLDVKP 225
>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6H|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli
pdb|1Q6I|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
pdb|1Q6I|B Chain B, Crystal Structure Of A Truncated Form Of Fkpa From
Escherichia Coli, In Complex With Immunosuppressant
Fk506
Length = 224
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 182 VIVPPEAGYDKKRMNEIPPGATFELNIELLQVK 214
+++PPE Y K + IPP +T ++ELL VK
Sbjct: 192 LVIPPELAYGKAGVPGIPPNSTLVFDVELLDVK 224
>pdb|2PBC|A Chain A, Fk506-Binding Protein 2
pdb|2PBC|B Chain B, Fk506-Binding Protein 2
pdb|2PBC|C Chain C, Fk506-Binding Protein 2
pdb|2PBC|D Chain D, Fk506-Binding Protein 2
Length = 102
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 173 GMKVGGKRTVIVPPEAGYDKKRM-NEIPPGATFELNIELLQVK 214
GM G KR +++P E GY ++ +IP GAT +ELL+++
Sbjct: 55 GMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIE 97
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 142 ERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPG 201
E+ E + + + SA A P+ + + E +KV G +P + G ++ R+N +PP
Sbjct: 71 EKLVELMKKVDVVISALAVPQYLD-QFKILEAIKVAGNIKRFLPSDFGVEEDRINALPP- 128
Query: 202 ATFELNIE 209
FE IE
Sbjct: 129 --FEALIE 134
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 142 ERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPG 201
E+ E + + + SA A P+ + + E +KV G +P + G ++ R+N +PP
Sbjct: 71 EKLVELMKKVDVVISALAFPQILD-QFKILEAIKVAGNIKRFLPSDFGVEEDRINALPP- 128
Query: 202 ATFELNIE 209
FE IE
Sbjct: 129 --FEALIE 134
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 142 ERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPG 201
E+ E + + + SA A P+ + + E +KV G +P + G ++ R+N +PP
Sbjct: 67 EKLVELMKKVDVVISALAFPQILDQ-FKILEAIKVAGNIKRFLPSDFGVEEDRINALPP- 124
Query: 202 ATFELNIE 209
FE IE
Sbjct: 125 --FEALIE 130
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 142 ERKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPG 201
E+ E + + + SA A P+ + + E +KV G +P + G ++ R+N +PP
Sbjct: 71 EKLVELMKKVDVVISALAFPQILD-QFKILEAIKVAGNIKRFLPSDFGVEEDRINALPP- 128
Query: 202 ATFELNIE 209
FE IE
Sbjct: 129 --FEALIE 134
>pdb|1OSG|A Chain A, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|B Chain B, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|C Chain C, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|D Chain D, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|E Chain E, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|1OSG|F Chain F, Complex Between Baff And A Br3 Derived Peptide Presented
In A Beta-Hairpin Scaffold
pdb|3V56|A Chain A, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|B Chain B, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|C Chain C, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|D Chain D, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|E Chain E, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide.
pdb|3V56|F Chain F, Re-refinement Of Pdb Entry 1osg - Complex Between Baff And
A Br3 Derived Peptide Presented In A Beta-hairpin
Scaffold - Reveals An Additonal Copy Of The Peptide
Length = 208
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 57 SEARERRNKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIFRGITAVSSR 116
+ ++ RNK+A+ + T D L+ I + + P QKGS V + F+ +A+ +
Sbjct: 47 NSSQNSRNKRAVQGPEETVTQDCLQL--IADSETPTIQKGSYTFVPWLLSFKRGSALEEK 104
Query: 117 ESKLL 121
E+K+L
Sbjct: 105 ENKIL 109
>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti
pdb|2LPV|A Chain A, Solution Structure Of Fkbp12 From Aedes Aegypti
Length = 108
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 174 MKVGGKRTVIVPPEAGYDKKRM-NEIPPGATFELNIELLQVK 214
M VG + ++ P+ Y + IPP AT ++ELL+V+
Sbjct: 67 MSVGQRAKLVCSPDYAYGSRGHPGVIPPNATLTFDVELLRVE 108
>pdb|2DU7|A Chain A, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|B Chain B, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|C Chain C, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
pdb|2DU7|D Chain D, Crystal Structure Of Methanococcus Jannacshii
O-Phosphoseryl-Trna Synthetase
Length = 549
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 18 PQHTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTS 77
P+ TT+ + + S ++ I LP + S+ +C +R ++ L YH+ S
Sbjct: 188 PESTTLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSH--LMSYHSAS 245
Query: 78 DGLKYYDIVEGKGPVAQKGSTVQVHF 103
+ D+ G V +G Q F
Sbjct: 246 CVVVGEDVSVDDGKVVAEGLLAQFGF 271
>pdb|3OI8|A Chain A, The Crystal Structure Of Functionally Unknown Conserved
Protein Domain From Neisseria Meningitidis Mc58
pdb|3OI8|B Chain B, The Crystal Structure Of Functionally Unknown Conserved
Protein Domain From Neisseria Meningitidis Mc58
Length = 156
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 56 CSEARERRNKKAIPLEDYHTTSDGLKYYDIVE 87
E RE+RN AI +++Y TS + + DI+E
Sbjct: 125 LKEFREQRNHXAIVIDEYGGTSGLVTFEDIIE 156
>pdb|4ATS|A Chain A, Structure Of The Orf273 Protein From The Acidianus Two-
Tailed Virus
Length = 293
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 55 KCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEG------KGPVAQKGSTVQVHFDCIFR 108
K +E RE ++ IP E+ T+D K DIVE + +K T++ + I R
Sbjct: 24 KITEEREFQSISEIPEEEIDATNDEEKLADIVENEIEKEIRKSKTRKCKTIENFYYYILR 83
Query: 109 G--ITAVSSRESKLLAGNRSIAEPYEF 133
I S + ++ G RS + Y F
Sbjct: 84 DGKIYPASDYDIEVEKGKRSANDIYAF 110
>pdb|2L47|A Chain A, Solution Structure Of The Plyg Catalytic Domain
Length = 165
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 15/64 (23%)
Query: 20 HTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDG 79
H + K+A+ IP+ R A A C + N+++I +E ++ S G
Sbjct: 54 HIAVDDKKAIQGIPLERNAWA---------------CGDGNGSGNRQSISVEICYSKSGG 98
Query: 80 LKYY 83
+YY
Sbjct: 99 DRYY 102
>pdb|4ART|A Chain A, Structure Of The Orf273 Protein From The Acidianus
Two-Tailed Virus
pdb|4ART|B Chain B, Structure Of The Orf273 Protein From The Acidianus
Two-Tailed Virus
Length = 279
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 55 KCSEARERRNKKAIPLEDYHTTSDGLKYYDIVEG------KGPVAQKGSTVQVHFDCIFR 108
K +E RE ++ IP E+ T+D K DIVE + +K T++ + I R
Sbjct: 4 KITEEREFQSISEIPEEEIDATNDEEKLADIVENEIEKEIRKSKTRKCKTIENFYYYILR 63
Query: 109 G--ITAVSSRESKLLAGNRSIAEPYEF 133
I S + ++ G RS + Y F
Sbjct: 64 DGKIYPASDYDIEVEKGKRSANDIYAF 90
>pdb|1YB0|A Chain A, Structure Of Plyl
pdb|1YB0|B Chain B, Structure Of Plyl
pdb|1YB0|C Chain C, Structure Of Plyl
Length = 159
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 15/64 (23%)
Query: 20 HTTIQAKQAVVSIPISRRAAAILISSLPFSVISLPKCSEARERRNKKAIPLEDYHTTSDG 79
H + KQA+ IP R A A C + N+++I +E ++ S G
Sbjct: 54 HVAVDDKQAIQGIPWERNAWA---------------CGDGNGPGNRESISVEICYSKSGG 98
Query: 80 LKYY 83
+YY
Sbjct: 99 DRYY 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,701,369
Number of Sequences: 62578
Number of extensions: 264388
Number of successful extensions: 583
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 544
Number of HSP's gapped (non-prelim): 39
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)