Query 027748
Match_columns 219
No_of_seqs 191 out of 1350
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 14:34:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027748.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027748hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0545 FkpA FKBP-type peptidy 100.0 3E-30 6.6E-35 214.9 14.5 117 64-214 87-205 (205)
2 TIGR03516 ppisom_GldI peptidyl 99.9 3.1E-27 6.6E-32 195.6 12.9 114 69-215 60-177 (177)
3 KOG0552 FKBP-type peptidyl-pro 99.9 6.7E-27 1.4E-31 198.7 12.9 108 74-214 116-226 (226)
4 KOG0544 FKBP-type peptidyl-pro 99.9 2.4E-26 5.3E-31 169.4 11.8 104 79-214 2-108 (108)
5 PRK11570 peptidyl-prolyl cis-t 99.9 1.7E-25 3.7E-30 189.2 14.0 116 65-214 89-206 (206)
6 KOG0549 FKBP-type peptidyl-pro 99.9 8.9E-25 1.9E-29 179.0 13.5 109 77-217 67-179 (188)
7 PRK10902 FKBP-type peptidyl-pr 99.9 4.3E-24 9.2E-29 187.1 14.9 120 65-218 133-253 (269)
8 PF00254 FKBP_C: FKBP-type pep 99.8 5.2E-20 1.1E-24 136.2 10.6 88 92-211 4-94 (94)
9 PRK15095 FKBP-type peptidyl-pr 99.6 1.7E-15 3.6E-20 123.2 8.4 71 92-194 4-75 (156)
10 KOG0543 FKBP-type peptidyl-pro 99.6 7.5E-15 1.6E-19 133.4 12.7 104 77-214 83-190 (397)
11 PRK10737 FKBP-type peptidyl-pr 99.5 1.9E-13 4.1E-18 114.8 7.8 71 92-195 2-73 (196)
12 COG1047 SlpA FKBP-type peptidy 99.4 2.6E-13 5.7E-18 111.5 8.2 71 92-194 2-73 (174)
13 KOG0543 FKBP-type peptidyl-pro 98.9 1.7E-09 3.8E-14 98.7 7.4 80 86-212 1-83 (397)
14 TIGR00115 tig trigger factor. 98.9 1.1E-08 2.3E-13 94.4 10.8 87 92-216 146-232 (408)
15 PRK01490 tig trigger factor; P 98.8 5.3E-08 1.2E-12 90.6 11.4 87 92-216 157-243 (435)
16 COG0544 Tig FKBP-type peptidyl 98.4 9.4E-07 2E-11 82.8 9.3 86 93-216 158-243 (441)
17 KOG0545 Aryl-hydrocarbon recep 97.8 3.7E-06 8E-11 73.2 -0.3 78 76-185 8-90 (329)
18 KOG0549 FKBP-type peptidyl-pro 97.4 0.00012 2.6E-09 60.8 3.1 49 162-213 7-55 (188)
19 PF08139 LPAM_1: Prokaryotic m 47.9 20 0.00043 20.3 2.1 20 33-52 5-24 (25)
20 PHA02122 hypothetical protein 47.4 35 0.00077 23.1 3.6 20 94-113 39-58 (65)
21 PRK12407 flgH flagellar basal 45.1 43 0.00094 28.8 4.8 16 92-107 64-79 (221)
22 PF01272 GreA_GreB: Transcript 42.3 57 0.0012 22.7 4.4 23 165-187 44-66 (77)
23 PF01346 FKBP_N: Domain amino 41.6 16 0.00034 27.7 1.5 20 65-84 105-124 (124)
24 cd01090 Creatinase Creatine am 41.2 26 0.00057 29.6 2.9 25 91-115 75-99 (228)
25 PLN00042 photosystem II oxygen 39.2 73 0.0016 28.2 5.3 23 33-55 49-72 (260)
26 PRK05892 nucleoside diphosphat 33.3 80 0.0017 25.5 4.4 35 165-216 123-157 (158)
27 cd01089 PA2G4-like Related to 30.8 62 0.0014 27.2 3.6 26 91-116 81-106 (228)
28 PF13627 LPAM_2: Prokaryotic l 28.6 65 0.0014 18.0 2.2 16 39-54 3-18 (24)
29 TIGR03096 nitroso_cyanin nitro 25.5 1.4E+02 0.0031 23.7 4.5 28 77-104 43-76 (135)
30 TIGR01462 greA transcription e 25.4 1.3E+02 0.0028 23.9 4.3 24 164-187 118-141 (151)
31 PLN03158 methionine aminopepti 25.1 74 0.0016 29.7 3.2 25 91-115 216-240 (396)
32 TIGR00501 met_pdase_II methion 25.1 78 0.0017 28.0 3.3 25 91-115 73-97 (295)
33 PRK08671 methionine aminopepti 24.0 87 0.0019 27.6 3.4 25 91-115 70-94 (291)
34 PRK12897 methionine aminopepti 23.9 86 0.0019 26.7 3.2 26 90-115 82-107 (248)
35 PRK12318 methionine aminopepti 23.8 81 0.0018 27.9 3.1 27 90-116 123-149 (291)
36 cd01088 MetAP2 Methionine Amin 23.5 84 0.0018 27.7 3.2 26 90-115 68-93 (291)
37 TIGR01461 greB transcription e 21.9 1.5E+02 0.0033 23.8 4.1 22 166-187 122-143 (156)
38 PRK05753 nucleoside diphosphat 21.8 2E+02 0.0043 22.6 4.7 22 165-186 93-114 (137)
39 TIGR01480 copper_res_A copper- 21.2 1.7E+02 0.0037 28.8 5.0 13 92-104 79-91 (587)
40 PRK12896 methionine aminopepti 21.2 1E+02 0.0022 26.1 3.1 25 91-115 89-113 (255)
41 PF05753 TRAP_beta: Translocon 21.1 2.4E+02 0.0053 23.3 5.3 20 90-109 31-50 (181)
42 PRK00226 greA transcription el 21.1 1.6E+02 0.0034 23.5 4.1 23 165-187 124-146 (157)
43 TIGR00495 crvDNA_42K 42K curve 20.2 1E+02 0.0023 28.6 3.2 26 91-116 99-124 (389)
44 PF09122 DUF1930: Domain of un 20.1 61 0.0013 22.5 1.2 26 162-187 32-57 (68)
45 TIGR00500 met_pdase_I methioni 20.0 1.2E+02 0.0025 25.7 3.2 27 90-116 81-107 (247)
No 1
>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3e-30 Score=214.95 Aligned_cols=117 Identities=37% Similarity=0.617 Sum_probs=107.3
Q ss_pred cccCCCCCCeeeCCCceEEEEEecCCCCCCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcc
Q 027748 64 NKKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKE 142 (219)
Q Consensus 64 ~k~~~~~~~~~~~~sGl~y~~l~~G~G~~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~ 142 (219)
...+.......++++|++|++++.|+|+.|+.+|.|.+||++++ ||++||||+++ ++|+.|.+|.
T Consensus 87 ~~~~~k~~~v~~~~sgl~y~~~~~G~G~~~~~~~~V~vhY~G~l~~G~vFDsS~~r---------g~p~~f~l~~----- 152 (205)
T COG0545 87 LEKNAKEKGVKTLPSGLQYKVLKAGDGAAPKKGDTVTVHYTGTLIDGTVFDSSYDR---------GQPAEFPLGG----- 152 (205)
T ss_pred HhhhcccCCceECCCCcEEEEEeccCCCCCCCCCEEEEEEEEecCCCCcccccccc---------CCCceeecCC-----
Confidence 34455566788999999999999999999999999999999986 99999999986 9999999984
Q ss_pred cccccccccCcccccCCCCCCCCchhhhhhcCccccEEEEEecCCCCCCCCCCC-CCCCCCeEEEEEEEEeec
Q 027748 143 RKREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EIPPGATFELNIELLQVK 214 (219)
Q Consensus 143 ~~~~~~~~~~g~~~~~~~~~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~-~Ip~~stL~f~IeLl~v~ 214 (219)
+|+||.++|.+|++|++|+++|||++|||.+|.+ .||||++|+|+|||++|.
T Consensus 153 --------------------vI~Gw~egl~~M~vG~k~~l~IP~~laYG~~g~~g~Ippns~LvFeVeLl~v~ 205 (205)
T COG0545 153 --------------------VIPGWDEGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLDVK 205 (205)
T ss_pred --------------------eeehHHHHHhhCCCCceEEEEeCchhccCcCCCCCCCCCCCeEEEEEEEEecC
Confidence 5999999999999999999999999999999965 499999999999999984
No 2
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=99.95 E-value=3.1e-27 Score=195.60 Aligned_cols=114 Identities=25% Similarity=0.371 Sum_probs=102.2
Q ss_pred CCCCeeeCCCceEEEEEec--CCCCCCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCccccc
Q 027748 69 PLEDYHTTSDGLKYYDIVE--GKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKR 145 (219)
Q Consensus 69 ~~~~~~~~~sGl~y~~l~~--G~G~~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~ 145 (219)
+...|.++++|++|.++++ |+|..|+.||.|.+||++++ +|++|+++++ ..|+.|.+|.+
T Consensus 60 ~~~~~~~t~sGl~Y~v~~~~~g~g~~p~~gd~V~v~Y~~~~~dG~v~~ss~~----------~~P~~f~vg~~------- 122 (177)
T TIGR03516 60 SIVKYETSQNGFWYYYNQKDTGEGTTPEFGDLVTFEYDIRALDGDVIYSEEE----------LGPQTYKVDQQ------- 122 (177)
T ss_pred CCCCceECCCccEEEEEEecCCCCCcCCCCCEEEEEEEEEeCCCCEEEeCCC----------CCCEEEEeCCc-------
Confidence 3456888999999999977 66678999999999999985 9999999976 46999999975
Q ss_pred ccccccCcccccCCCCCCCCchhhhhhcCccccEEEEEecCCCCCCCCCCC-CCCCCCeEEEEEEEEeecC
Q 027748 146 EFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EIPPGATFELNIELLQVKP 215 (219)
Q Consensus 146 ~~~~~~~g~~~~~~~~~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~-~Ip~~stL~f~IeLl~v~~ 215 (219)
++++||+++|.+|++|++++|+|||++|||..|.+ .||||++|+|+|+|++|.+
T Consensus 123 ----------------~vi~Gl~e~L~~Mk~Ge~~~~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~~ 177 (177)
T TIGR03516 123 ----------------DLFSGLRDGLKLMKEGETATFLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIKP 177 (177)
T ss_pred ----------------chhHHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEecC
Confidence 57999999999999999999999999999999875 5999999999999999964
No 3
>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.7e-27 Score=198.66 Aligned_cols=108 Identities=43% Similarity=0.703 Sum_probs=102.4
Q ss_pred eeCCCceEEEEEecCCCCCCCCCCEEEEEEEEEE--cCeEEeeccchhcccCCCCCCCCeE-EEeCCCCCcccccccccc
Q 027748 74 HTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF--RGITAVSSRESKLLAGNRSIAEPYE-FKVGGPPGKERKREFVDN 150 (219)
Q Consensus 74 ~~~~sGl~y~~l~~G~G~~~~~Gd~V~v~Y~~~~--~G~~~~ss~~~~~~~~~~~~~~p~~-f~lg~~~~~~~~~~~~~~ 150 (219)
.++++|++|++++.|+|+.+..|++|.+||.+++ +|++|++++. +.|+. |.+|.+
T Consensus 116 ~tl~~Gl~y~D~~vG~G~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~----------~kp~~~f~lg~g------------ 173 (226)
T KOG0552|consen 116 RTLPGGLRYEDLRVGSGPSAKKGKRVSVRYIGKLKGNGKVFDSNFG----------GKPFKLFRLGSG------------ 173 (226)
T ss_pred eecCCCcEEEEEEecCCCCCCCCCEEEEEEEEEecCCCeEeecccC----------CCCccccccCCC------------
Confidence 5789999999999999999999999999999986 7999999986 68888 999987
Q ss_pred cCcccccCCCCCCCCchhhhhhcCccccEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEeec
Q 027748 151 QNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVK 214 (219)
Q Consensus 151 ~~g~~~~~~~~~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~~Ip~~stL~f~IeLl~v~ 214 (219)
++|+||+.++.+|++|++|+|+|||++|||.++.+.||||++|+|+|||+.|.
T Consensus 174 -----------~VIkG~d~gv~GMkvGGkRrviIPp~lgYg~~g~~~IppnstL~fdVEL~~v~ 226 (226)
T KOG0552|consen 174 -----------EVIKGWDVGVEGMKVGGKRRVIIPPELGYGKKGVPEIPPNSTLVFDVELLSVK 226 (226)
T ss_pred -----------CCCchHHHhhhhhccCCeeEEEeCccccccccCcCcCCCCCcEEEEEEEEecC
Confidence 78999999999999999999999999999999999999999999999999874
No 4
>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-26 Score=169.44 Aligned_cols=104 Identities=32% Similarity=0.536 Sum_probs=97.3
Q ss_pred ceEEEEEecCCCC-CCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccccCcccc
Q 027748 79 GLKYYDIVEGKGP-VAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFS 156 (219)
Q Consensus 79 Gl~y~~l~~G~G~-~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~~~g~~~ 156 (219)
|+..+++..|+|. .|+.||.|++||++.+ ||+.||||+++ +.||.|.+|.+
T Consensus 2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr---------~kPfkf~IGkg------------------ 54 (108)
T KOG0544|consen 2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDR---------GKPFKFKIGKG------------------ 54 (108)
T ss_pred CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccccc---------CCCeeEEecCc------------------
Confidence 6788999999996 6999999999999986 99999999886 89999999997
Q ss_pred cCCCCCCCCchhhhhhcCccccEEEEEecCCCCCCCCCCC-CCCCCCeEEEEEEEEeec
Q 027748 157 AQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EIPPGATFELNIELLQVK 214 (219)
Q Consensus 157 ~~~~~~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~-~Ip~~stL~f~IeLl~v~ 214 (219)
++|.||++++..|.+|++.++.|+|++|||..|.+ .||||++|+|||||++|.
T Consensus 55 -----eVIkGwdegv~qmsvGekakLti~pd~aYG~~G~p~~IppNatL~FdVEll~v~ 108 (108)
T KOG0544|consen 55 -----EVIKGWDEGVAQMSVGEKAKLTISPDYAYGPRGHPGGIPPNATLVFDVELLKVN 108 (108)
T ss_pred -----ceeechhhcchhccccccceeeeccccccCCCCCCCccCCCcEEEEEEEEEecC
Confidence 68999999999999999999999999999999976 499999999999999874
No 5
>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.93 E-value=1.7e-25 Score=189.20 Aligned_cols=116 Identities=28% Similarity=0.485 Sum_probs=106.7
Q ss_pred ccCCCCCCeeeCCCceEEEEEecCCCCCCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCccc
Q 027748 65 KKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKER 143 (219)
Q Consensus 65 k~~~~~~~~~~~~sGl~y~~l~~G~G~~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~ 143 (219)
+.+.+.+.+.++++|++|+++++|+|+.|..||.|.+||++++ ||++|++++.+ ++|+.|.++.
T Consensus 89 ~~~~k~~gv~~t~sGl~y~vi~~G~G~~p~~~d~V~v~Y~g~l~dG~vfdss~~~---------g~P~~f~l~~------ 153 (206)
T PRK11570 89 EENAKKEGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVAR---------GEPAEFPVNG------ 153 (206)
T ss_pred HHhhhcCCcEECCCCcEEEEEeCCCCCCCCCCCEEEEEEEEEECCCCEEEeccCC---------CCCeEEEeec------
Confidence 4556677899999999999999999999999999999999985 99999999875 7899999964
Q ss_pred ccccccccCcccccCCCCCCCCchhhhhhcCccccEEEEEecCCCCCCCCCCC-CCCCCCeEEEEEEEEeec
Q 027748 144 KREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EIPPGATFELNIELLQVK 214 (219)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~-~Ip~~stL~f~IeLl~v~ 214 (219)
+|+||+++|.+|++|++++|+|||++|||..|.+ .||||++|+|+|||++|.
T Consensus 154 -------------------vipG~~eaL~~M~~G~k~~~~IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i~ 206 (206)
T PRK11570 154 -------------------VIPGWIEALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELLEIL 206 (206)
T ss_pred -------------------hhhHHHHHHcCCCCCCEEEEEECHHHcCCCCCCCCCcCCCCeEEEEEEEEEEC
Confidence 5899999999999999999999999999999886 599999999999999984
No 6
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.9e-25 Score=179.03 Aligned_cols=109 Identities=28% Similarity=0.423 Sum_probs=96.0
Q ss_pred CCceEEEEEecC--CCCCCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccccCc
Q 027748 77 SDGLKYYDIVEG--KGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNG 153 (219)
Q Consensus 77 ~sGl~y~~l~~G--~G~~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~~~g 153 (219)
.+.++..++.+- -..+++.||.+.+||++.+ ||+.||||+.+ ++|+.|.+|.+
T Consensus 67 ~~~l~I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~r---------g~P~~f~LG~g--------------- 122 (188)
T KOG0549|consen 67 DEELQIGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSR---------GAPFTFTLGTG--------------- 122 (188)
T ss_pred CCceeEEEEECCccccccccCCCEEEEEEEEEecCCCEEeeeccC---------CCCEEEEeCCC---------------
Confidence 345666666652 2457899999999999975 99999999986 89999999997
Q ss_pred ccccCCCCCCCCchhhhhhcCccccEEEEEecCCCCCCCCCCCC-CCCCCeEEEEEEEEeecCCC
Q 027748 154 LFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNE-IPPGATFELNIELLQVKPPE 217 (219)
Q Consensus 154 ~~~~~~~~~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~~-Ip~~stL~f~IeLl~v~~~~ 217 (219)
++|+||+.+|.+|++||+|+++|||++|||++|.+. ||++++|+|||||+++.+.+
T Consensus 123 --------qVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~~~~IP~~A~LiFdiELv~i~~~~ 179 (188)
T KOG0549|consen 123 --------QVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGAPPKIPGDAVLIFDIELVKIERGP 179 (188)
T ss_pred --------ceeccHhHHhhhhCcccceEEecCccccCccCCCCCCCCCCeeEEEEEEEEEeecCC
Confidence 789999999999999999999999999999999754 99999999999999998753
No 7
>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.92 E-value=4.3e-24 Score=187.13 Aligned_cols=120 Identities=32% Similarity=0.493 Sum_probs=109.3
Q ss_pred ccCCCCCCeeeCCCceEEEEEecCCCCCCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCccc
Q 027748 65 KKAIPLEDYHTTSDGLKYYDIVEGKGPVAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKER 143 (219)
Q Consensus 65 k~~~~~~~~~~~~sGl~y~~l~~G~G~~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~ 143 (219)
..+...+.+.++++|++|+++++|+|..|+.||.|.+||++++ ||++|++++.+ +.|+.|.++.
T Consensus 133 ~~~~k~~gv~~t~sGl~y~Vi~~G~G~~p~~gD~V~V~Y~g~l~dG~vfdss~~~---------g~p~~f~l~~------ 197 (269)
T PRK10902 133 EKFAKEKGVKTTSTGLLYKVEKEGTGEAPKDSDTVVVNYKGTLIDGKEFDNSYTR---------GEPLSFRLDG------ 197 (269)
T ss_pred HHhccCCCcEECCCccEEEEEeCCCCCCCCCCCEEEEEEEEEeCCCCEeeccccC---------CCceEEecCC------
Confidence 4455667899999999999999999999999999999999985 99999999865 7899999864
Q ss_pred ccccccccCcccccCCCCCCCCchhhhhhcCccccEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEeecCCCC
Q 027748 144 KREFVDNQNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPPEG 218 (219)
Q Consensus 144 ~~~~~~~~~g~~~~~~~~~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~~Ip~~stL~f~IeLl~v~~~~~ 218 (219)
+|+||+++|.+|++|++++|+||++++||..+...||||++|+|+|+|++|.++++
T Consensus 198 -------------------vipG~~EaL~~Mk~Gek~~l~IP~~laYG~~g~~gIppns~LvfeVeLl~V~~~~~ 253 (269)
T PRK10902 198 -------------------VIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPANSTLVFDVELLDVKPAPK 253 (269)
T ss_pred -------------------cchHHHHHHhcCCCCcEEEEEECchhhCCCCCCCCCCCCCcEEEEEEEEEeccCcc
Confidence 58999999999999999999999999999998888999999999999999987654
No 8
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=99.83 E-value=5.2e-20 Score=136.18 Aligned_cols=88 Identities=39% Similarity=0.683 Sum_probs=81.2
Q ss_pred CCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCCchhhh
Q 027748 92 VAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSV 170 (219)
Q Consensus 92 ~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~i~gl~~a 170 (219)
+++.||.|.+||++++ +|+.|++++.. ..|+.|.+|.+ .+++||+++
T Consensus 4 ~~~~gd~V~i~y~~~~~~g~~~~~~~~~---------~~~~~~~~g~~-----------------------~~i~g~e~a 51 (94)
T PF00254_consen 4 TPKEGDTVTIHYTGRLEDGKVFDSSYQE---------GEPFEFRLGSG-----------------------QVIPGLEEA 51 (94)
T ss_dssp SBSTTSEEEEEEEEEETTSEEEEETTTT---------TSEEEEETTSS-----------------------SSSHHHHHH
T ss_pred cCCCCCEEEEEEEEEECCCcEEEEeeec---------CcceeeeeccC-----------------------ccccchhhh
Confidence 5999999999999987 99999999754 78999999986 579999999
Q ss_pred hhcCccccEEEEEecCCCCCCCCCCC--CCCCCCeEEEEEEEE
Q 027748 171 TEGMKVGGKRTVIVPPEAGYDKKRMN--EIPPGATFELNIELL 211 (219)
Q Consensus 171 l~gMk~G~k~~v~vPp~layG~~g~~--~Ip~~stL~f~IeLl 211 (219)
|.+|++|+++++.||++++||..+.. .||++++|+|+|+|+
T Consensus 52 l~~m~~Ge~~~~~vp~~~ayg~~~~~~~~ip~~~~l~f~Iell 94 (94)
T PF00254_consen 52 LIGMKVGEKREFYVPPELAYGEKGLEPPKIPPNSTLVFEIELL 94 (94)
T ss_dssp HTTSBTTEEEEEEEEGGGTTTTTTBCTTTBTTTSEEEEEEEEE
T ss_pred cccccCCCEeeeEeCChhhcCccccCCCCcCCCCeEEEEEEEC
Confidence 99999999999999999999998873 499999999999996
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.61 E-value=1.7e-15 Score=123.18 Aligned_cols=71 Identities=32% Similarity=0.474 Sum_probs=64.8
Q ss_pred CCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCCchhhh
Q 027748 92 VAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSV 170 (219)
Q Consensus 92 ~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~i~gl~~a 170 (219)
.++.||.|.+||++++ ||++|++|+.. ++|+.|.+|.+ ++++||+++
T Consensus 4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~---------~~P~~f~~G~g-----------------------~vi~gle~a 51 (156)
T PRK15095 4 SVQSNSAVLVHFTLKLDDGSTAESTRNN---------GKPALFRLGDG-----------------------SLSEGLEQQ 51 (156)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEECCCC---------CCCEEEEeCCC-----------------------CccHHHHHH
Confidence 5789999999999986 89999999864 68999999986 679999999
Q ss_pred hhcCccccEEEEEecCCCCCCCCC
Q 027748 171 TEGMKVGGKRTVIVPPEAGYDKKR 194 (219)
Q Consensus 171 l~gMk~G~k~~v~vPp~layG~~g 194 (219)
|.+|++|+++.|.|||++|||...
T Consensus 52 L~gm~~Ge~~~v~ipp~~ayG~~d 75 (156)
T PRK15095 52 LLGLKVGDKKTFSLEPEAAFGVPS 75 (156)
T ss_pred HcCCCCCCEEEEEEChHHhcCCCC
Confidence 999999999999999999999654
No 10
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.5e-15 Score=133.43 Aligned_cols=104 Identities=27% Similarity=0.348 Sum_probs=89.8
Q ss_pred CCceEEEEEecCCC--CCCCCCCEEEEEEEEEEcCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccccCcc
Q 027748 77 SDGLKYYDIVEGKG--PVAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGL 154 (219)
Q Consensus 77 ~sGl~y~~l~~G~G--~~~~~Gd~V~v~Y~~~~~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~~~g~ 154 (219)
+.+|..+++++|.| ..|.+|..|.+||.+++.|.+|+++ .-.|.|.+|+.-
T Consensus 83 Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~~f~~~------------~~~fe~~~Ge~~--------------- 135 (397)
T KOG0543|consen 83 DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDGVFDQR------------ELRFEFGEGEDI--------------- 135 (397)
T ss_pred CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCcceecc------------ccceEEecCCcc---------------
Confidence 78999999999999 4799999999999999877688765 334677777630
Q ss_pred cccCCCCCCCCchhhhhhcCccccEEEEEecCCCCCCCCCC--CCCCCCCeEEEEEEEEeec
Q 027748 155 FSAQAAPKPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRM--NEIPPGATFELNIELLQVK 214 (219)
Q Consensus 155 ~~~~~~~~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~--~~Ip~~stL~f~IeLl~v~ 214 (219)
.+|.||+.||..|++|+.+.|+|+|+++||..+. ..||||++|.|+|+|+++.
T Consensus 136 -------~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IPPnA~l~yEVeL~~f~ 190 (397)
T KOG0543|consen 136 -------DVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIPPNATLLYEVELLDFE 190 (397)
T ss_pred -------chhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCCCCceEEEEEEEEeee
Confidence 5789999999999999999999999999995444 3499999999999999998
No 11
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=99.45 E-value=1.9e-13 Score=114.84 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=64.3
Q ss_pred CCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCCchhhh
Q 027748 92 VAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSV 170 (219)
Q Consensus 92 ~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~i~gl~~a 170 (219)
++++++.|+++|+++. +|.+|++|+. ..|+.|.+|.+ +++|+|+++
T Consensus 2 kI~~~~vV~l~Y~l~~~dG~v~dst~~----------~~Pl~~~~G~g-----------------------~lipglE~a 48 (196)
T PRK10737 2 KVAKDLVVSLAYQVRTEDGVLVDESPV----------SAPLDYLHGHG-----------------------SLISGLETA 48 (196)
T ss_pred ccCCCCEEEEEEEEEeCCCCEEEecCC----------CCCeEEEeCCC-----------------------cchHHHHHH
Confidence 3678999999999997 8999999975 68999999986 679999999
Q ss_pred hhcCccccEEEEEecCCCCCCCCCC
Q 027748 171 TEGMKVGGKRTVIVPPEAGYDKKRM 195 (219)
Q Consensus 171 l~gMk~G~k~~v~vPp~layG~~g~ 195 (219)
|.+|++|+++.|.|||+.|||.+..
T Consensus 49 L~G~~~Gd~~~v~l~peeAyGe~d~ 73 (196)
T PRK10737 49 LEGHEVGDKFDVAVGANDAYGQYDE 73 (196)
T ss_pred HcCCCCCCEEEEEEChHHhcCCCCh
Confidence 9999999999999999999997653
No 12
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.6e-13 Score=111.48 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=64.5
Q ss_pred CCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCCchhhh
Q 027748 92 VAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSV 170 (219)
Q Consensus 92 ~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~i~gl~~a 170 (219)
.+++||.|.+||+++. ||++|++|.+. .+|+.|.+|.+ ++++||++|
T Consensus 2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~---------~~P~~~i~G~g-----------------------~li~glE~a 49 (174)
T COG1047 2 KIEKGDVVSLHYTLKVEDGEVVDTTDEN---------YGPLTFIVGAG-----------------------QLIPGLEEA 49 (174)
T ss_pred cccCCCEEEEEEEEEecCCcEEEccccc---------CCCeEEEecCC-----------------------CcchhHHHH
Confidence 4689999999999997 79999999763 68999999987 679999999
Q ss_pred hhcCccccEEEEEecCCCCCCCCC
Q 027748 171 TEGMKVGGKRTVIVPPEAGYDKKR 194 (219)
Q Consensus 171 l~gMk~G~k~~v~vPp~layG~~g 194 (219)
|.+|.+|++..|.|||+.|||.+.
T Consensus 50 l~g~~~Ge~~~V~IpPE~AfGe~~ 73 (174)
T COG1047 50 LLGKEVGEEFTVEIPPEDAFGEYD 73 (174)
T ss_pred HhCCCCCceeEEEeCchHhcCCCC
Confidence 999999999999999999999654
No 13
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.7e-09 Score=98.67 Aligned_cols=80 Identities=29% Similarity=0.453 Sum_probs=69.8
Q ss_pred ecCCCC-CCCCCCEEEEEEEEEE-cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCC
Q 027748 86 VEGKGP-VAQKGSTVQVHFDCIF-RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKP 163 (219)
Q Consensus 86 ~~G~G~-~~~~Gd~V~v~Y~~~~-~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~ 163 (219)
++|+|. .|..||.|.+||++++ ||+.|+||.+ +.|+.|.+|.+ ++
T Consensus 1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d----------~~~~~~~lg~g-----------------------~v 47 (397)
T KOG0543|consen 1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD----------GDPFKFDLGKG-----------------------SV 47 (397)
T ss_pred CCCCCccCCCCCceeEEEEeEEecCCeecccccC----------CCceeeecCCC-----------------------cc
Confidence 478887 7999999999999985 9999999986 68999999997 67
Q ss_pred CCchhhhhhcCccccEEEEEecCCCCCCCCCCC-CCCCCCeEEEEEEEEe
Q 027748 164 PPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMN-EIPPGATFELNIELLQ 212 (219)
Q Consensus 164 i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~-~Ip~~stL~f~IeLl~ 212 (219)
|.||+.++..|+. |..+.+ .||++++|.|+|+|++
T Consensus 48 i~~~~~gv~tm~~--------------g~~~~pp~ip~~a~l~fe~el~D 83 (397)
T KOG0543|consen 48 IKGWDLGVATMKK--------------GEAGSPPKIPSNATLLFEVELLD 83 (397)
T ss_pred ccccccccccccc--------------cccCCCCCCCCCcceeeeecccC
Confidence 9999999999998 455544 5999999999999853
No 14
>TIGR00115 tig trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.
Probab=98.90 E-value=1.1e-08 Score=94.44 Aligned_cols=87 Identities=22% Similarity=0.407 Sum_probs=75.5
Q ss_pred CCCCCCEEEEEEEEEEcCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCCchhhhh
Q 027748 92 VAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVT 171 (219)
Q Consensus 92 ~~~~Gd~V~v~Y~~~~~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~i~gl~~al 171 (219)
.++.||.|.++|+++.+|..++++. ..++.|.+|.+ .+++||+++|
T Consensus 146 ~~~~gD~V~v~~~~~~dg~~~~~~~-----------~~~~~~~lg~~-----------------------~~~~~~ee~L 191 (408)
T TIGR00115 146 AAEKGDRVTIDFEGFIDGEAFEGGK-----------AENFSLELGSG-----------------------QFIPGFEEQL 191 (408)
T ss_pred ccCCCCEEEEEEEEEECCEECcCCC-----------CCCeEEEECCC-----------------------CcchhHHHHh
Confidence 5789999999999988999887653 57899999986 5789999999
Q ss_pred hcCccccEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEeecCC
Q 027748 172 EGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPP 216 (219)
Q Consensus 172 ~gMk~G~k~~v~vPp~layG~~g~~~Ip~~stL~f~IeLl~v~~~ 216 (219)
.||++|+++.+.+|....|+.... ++.++.|+|+|.+|...
T Consensus 192 ~G~k~Gd~~~~~v~~p~~~~~~~~----~gk~~~f~v~i~~I~~~ 232 (408)
T TIGR00115 192 VGMKAGEEKEIKVTFPEDYHAEEL----AGKEATFKVTVKEVKEK 232 (408)
T ss_pred CCCCCCCeeEEEecCccccCcccC----CCCeEEEEEEEEEeccC
Confidence 999999999999998878876543 68899999999999754
No 15
>PRK01490 tig trigger factor; Provisional
Probab=98.78 E-value=5.3e-08 Score=90.62 Aligned_cols=87 Identities=22% Similarity=0.362 Sum_probs=74.4
Q ss_pred CCCCCCEEEEEEEEEEcCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCCchhhhh
Q 027748 92 VAQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVT 171 (219)
Q Consensus 92 ~~~~Gd~V~v~Y~~~~~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~i~gl~~al 171 (219)
.++.||.|+++|++..+|..++++. ..++.|.+|.+ .+++||+++|
T Consensus 157 ~~~~gD~V~vd~~~~~~g~~~~~~~-----------~~~~~~~lg~~-----------------------~~~~~fee~L 202 (435)
T PRK01490 157 PAENGDRVTIDFVGSIDGEEFEGGK-----------AEDFSLELGSG-----------------------RFIPGFEEQL 202 (435)
T ss_pred cCCCCCEEEEEEEEEECCEECcCCC-----------CCceEEEEcCC-----------------------CcchhHHHHh
Confidence 4799999999999999998887653 56899999986 5799999999
Q ss_pred hcCccccEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEeecCC
Q 027748 172 EGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPP 216 (219)
Q Consensus 172 ~gMk~G~k~~v~vPp~layG~~g~~~Ip~~stL~f~IeLl~v~~~ 216 (219)
.||++|+++.+.++....|+.... ++.++.|.|+|.+|+..
T Consensus 203 ~G~k~Ge~~~~~~~~p~~~~~~~l----agk~~~f~v~v~~V~~~ 243 (435)
T PRK01490 203 VGMKAGEEKTIDVTFPEDYHAEDL----AGKEATFKVTVKEVKEK 243 (435)
T ss_pred CCCCCCCeeEEEecCccccccccC----CCCeEEEEEEEEEeccC
Confidence 999999999999987777765443 57899999999999753
No 16
>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9.4e-07 Score=82.80 Aligned_cols=86 Identities=21% Similarity=0.394 Sum_probs=68.4
Q ss_pred CCCCCEEEEEEEEEEcCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccccCcccccCCCCCCCCchhhhhh
Q 027748 93 AQKGSTVQVHFDCIFRGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDNQNGLFSAQAAPKPPPAMYSVTE 172 (219)
Q Consensus 93 ~~~Gd~V~v~Y~~~~~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~i~gl~~al~ 172 (219)
++.||.|+++|.++.||..|.... .+-+.|.+|++ ++||||+++|.
T Consensus 158 a~~gD~v~IDf~g~iDg~~fegg~-----------ae~~~l~lGs~-----------------------~fipgFe~~Lv 203 (441)
T COG0544 158 AENGDRVTIDFEGSVDGEEFEGGK-----------AENFSLELGSG-----------------------RFIPGFEDQLV 203 (441)
T ss_pred cccCCEEEEEEEEEEcCeeccCcc-----------ccCeEEEEcCC-----------------------CchhhHHhhhc
Confidence 899999999999999999776543 56789999997 67999999999
Q ss_pred cCccccEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEeecCC
Q 027748 173 GMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPP 216 (219)
Q Consensus 173 gMk~G~k~~v~vPp~layG~~g~~~Ip~~stL~f~IeLl~v~~~ 216 (219)
|||+|+++.|-|--...|..... +|.+..|.|+|..|...
T Consensus 204 G~k~Ge~k~i~vtFP~dy~a~~L----aGK~a~F~V~vkeVk~~ 243 (441)
T COG0544 204 GMKAGEEKDIKVTFPEDYHAEEL----AGKEATFKVKVKEVKKR 243 (441)
T ss_pred cCcCCCeeEEEEEcccccchhHh----CCCceEEEEEEEEEeec
Confidence 99999998854433333443222 56788999999998654
No 17
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=3.7e-06 Score=73.23 Aligned_cols=78 Identities=19% Similarity=0.210 Sum_probs=65.0
Q ss_pred CCCceEEEEEecCCCC--CCCCCCEEEEEEEEEE---cCeEEeeccchhcccCCCCCCCCeEEEeCCCCCcccccccccc
Q 027748 76 TSDGLKYYDIVEGKGP--VAQKGSTVQVHFDCIF---RGITAVSSRESKLLAGNRSIAEPYEFKVGGPPGKERKREFVDN 150 (219)
Q Consensus 76 ~~sGl~y~~l~~G~G~--~~~~Gd~V~v~Y~~~~---~G~~~~ss~~~~~~~~~~~~~~p~~f~lg~~~~~~~~~~~~~~ 150 (219)
...|++.+++..|+|+ ....|..|.+||.... .++++|+|+.. +.|.++.+|.-
T Consensus 8 ~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~---------gkPmeiiiGkk------------ 66 (329)
T KOG0545|consen 8 NVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKV---------GKPMEIIIGKK------------ 66 (329)
T ss_pred cchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhhc---------CCCeEEeeccc------------
Confidence 3468999999999998 4579999999999964 46788988765 89999999984
Q ss_pred cCcccccCCCCCCCCchhhhhhcCccccEEEEEec
Q 027748 151 QNGLFSAQAAPKPPPAMYSVTEGMKVGGKRTVIVP 185 (219)
Q Consensus 151 ~~g~~~~~~~~~~i~gl~~al~gMk~G~k~~v~vP 185 (219)
--.+-|+..|..|++++...|.+.
T Consensus 67 -----------FkL~VwE~il~tM~v~EvaqF~~d 90 (329)
T KOG0545|consen 67 -----------FKLEVWEIILTTMRVHEVAQFWCD 90 (329)
T ss_pred -----------cccHHHHHHHHHHhhhhHHHhhhh
Confidence 125889999999999998877664
No 18
>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00012 Score=60.77 Aligned_cols=49 Identities=29% Similarity=0.426 Sum_probs=37.7
Q ss_pred CCCCchhhhhhcCccccEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEee
Q 027748 162 KPPPAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQV 213 (219)
Q Consensus 162 ~~i~gl~~al~gMk~G~k~~v~vPp~layG~~g~~~Ip~~stL~f~IeLl~v 213 (219)
.+|+|+++++.+|+.|++|++++||+++||..+.. .-..++|.+.++.+
T Consensus 7 ~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---~~~~~~~~~~l~~~ 55 (188)
T KOG0549|consen 7 FVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---DLNILVITILLVLL 55 (188)
T ss_pred EEecCHHHHhhhhhccccceeccCCcccccccccc---cccceEEEeeeeeh
Confidence 46899999999999999999999999999954432 22245666665543
No 19
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=47.88 E-value=20 Score=20.30 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=12.6
Q ss_pred chhhhHHHHHHHHHHHHhcc
Q 027748 33 PISRRAAAILISSLPFSVIS 52 (219)
Q Consensus 33 ~~~Rr~~all~~~la~~~~~ 52 (219)
...||.+.++++++.+++|+
T Consensus 5 ~mmKkil~~l~a~~~LagCs 24 (25)
T PF08139_consen 5 SMMKKILFPLLALFMLAGCS 24 (25)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 34456555566666688886
No 20
>PHA02122 hypothetical protein
Probab=47.42 E-value=35 Score=23.14 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=17.4
Q ss_pred CCCCEEEEEEEEEEcCeEEe
Q 027748 94 QKGSTVQVHFDCIFRGITAV 113 (219)
Q Consensus 94 ~~Gd~V~v~Y~~~~~G~~~~ 113 (219)
..||.|.++|....+|+.|-
T Consensus 39 ~~gd~v~vn~e~~~ng~l~i 58 (65)
T PHA02122 39 DDGDEVIVNFELVVNGKLII 58 (65)
T ss_pred cCCCEEEEEEEEEECCEEEE
Confidence 47899999999999998774
No 21
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=45.11 E-value=43 Score=28.80 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=12.6
Q ss_pred CCCCCCEEEEEEEEEE
Q 027748 92 VAQKGSTVQVHFDCIF 107 (219)
Q Consensus 92 ~~~~Gd~V~v~Y~~~~ 107 (219)
.-..||.|+|...-..
T Consensus 64 A~~VGDiiTV~i~E~t 79 (221)
T PRK12407 64 AYRVGDILTVILDEST 79 (221)
T ss_pred ccCCCCEEEEEEEEec
Confidence 3579999999887653
No 22
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=42.35 E-value=57 Score=22.75 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=17.7
Q ss_pred CchhhhhhcCccccEEEEEecCC
Q 027748 165 PAMYSVTEGMKVGGKRTVIVPPE 187 (219)
Q Consensus 165 ~gl~~al~gMk~G~k~~v~vPp~ 187 (219)
.-|-.||.|.++|+...+.+|..
T Consensus 44 SPLG~ALlG~~~Gd~v~~~~~~g 66 (77)
T PF01272_consen 44 SPLGKALLGKKVGDEVEVELPGG 66 (77)
T ss_dssp SHHHHHHTT-BTT-EEEEEETTB
T ss_pred CHHHHHhcCCCCCCEEEEEeCCc
Confidence 34889999999999999988653
No 23
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=41.61 E-value=16 Score=27.73 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=14.0
Q ss_pred ccCCCCCCeeeCCCceEEEE
Q 027748 65 KKAIPLEDYHTTSDGLKYYD 84 (219)
Q Consensus 65 k~~~~~~~~~~~~sGl~y~~ 84 (219)
.++...+++++++|||+|++
T Consensus 105 a~n~k~~GV~~t~SGLqY~V 124 (124)
T PF01346_consen 105 AENAKKEGVKTTESGLQYKV 124 (124)
T ss_dssp HHHHTSTTEEE-TTS-EEEE
T ss_pred HHHcCCCCCEECCCCCeeeC
Confidence 33456678999999999986
No 24
>cd01090 Creatinase Creatine amidinohydrolase. E.C.3.5.3.3. Hydrolyzes creatine to sarcosine and urea.
Probab=41.19 E-value=26 Score=29.64 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=20.1
Q ss_pred CCCCCCCEEEEEEEEEEcCeEEeec
Q 027748 91 PVAQKGSTVQVHFDCIFRGITAVSS 115 (219)
Q Consensus 91 ~~~~~Gd~V~v~Y~~~~~G~~~~ss 115 (219)
..+++||.|.+++-+.++|...+.+
T Consensus 75 r~l~~GD~v~~d~g~~~~GY~ad~~ 99 (228)
T cd01090 75 RKVQRGDILSLNCFPMIAGYYTALE 99 (228)
T ss_pred cccCCCCEEEEEEeEEECCEeeeeE
Confidence 4679999999999888888765544
No 25
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=39.21 E-value=73 Score=28.16 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=11.9
Q ss_pred chhhhHHHH-HHHHHHHHhccCCC
Q 027748 33 PISRRAAAI-LISSLPFSVISLPK 55 (219)
Q Consensus 33 ~~~Rr~~al-l~~~la~~~~~~~~ 55 (219)
.++||.+++ ++.++++.+-..+.
T Consensus 49 ~~srr~~l~~~~ga~a~~~~~~pa 72 (260)
T PLN00042 49 AVSRRAALALLAGAAAAGAKVSPA 72 (260)
T ss_pred cccHHHHHHHHHHHHHhhcccCch
Confidence 378887654 44444444333343
No 26
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=33.31 E-value=80 Score=25.53 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=27.4
Q ss_pred CchhhhhhcCccccEEEEEecCCCCCCCCCCCCCCCCCeEEEEEEEEeecCC
Q 027748 165 PAMYSVTEGMKVGGKRTVIVPPEAGYDKKRMNEIPPGATFELNIELLQVKPP 216 (219)
Q Consensus 165 ~gl~~al~gMk~G~k~~v~vPp~layG~~g~~~Ip~~stL~f~IeLl~v~~~ 216 (219)
--+-.||.|-++|+.+.+..|.. .+.++|++|.++
T Consensus 123 SPlG~ALlGk~vGD~v~v~~p~g-----------------~~~~eI~~I~~~ 157 (158)
T PRK05892 123 SPLGQALAGHQAGDTVTYSTPQG-----------------PAQVELLAVKLP 157 (158)
T ss_pred CHHHHHHhCCCCCCEEEEEcCCC-----------------cEEEEEEEEEcC
Confidence 34889999999999999977654 256777888765
No 27
>cd01089 PA2G4-like Related to aminopepdidase M, this family contains proliferation-associated protein 2G4. Family members have been implicated in cell cycle control.
Probab=30.75 E-value=62 Score=27.17 Aligned_cols=26 Identities=23% Similarity=0.477 Sum_probs=21.0
Q ss_pred CCCCCCCEEEEEEEEEEcCeEEeecc
Q 027748 91 PVAQKGSTVQVHFDCIFRGITAVSSR 116 (219)
Q Consensus 91 ~~~~~Gd~V~v~Y~~~~~G~~~~ss~ 116 (219)
..++.||.|.+++-+.++|...|-++
T Consensus 81 ~~l~~Gd~v~iD~g~~~~GY~sD~tR 106 (228)
T cd01089 81 YTLKDGDVVKIDLGCHIDGYIAVVAH 106 (228)
T ss_pred cccCCCCEEEEEEEEEECCEEEEEEE
Confidence 35799999999998889997666543
No 28
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=28.57 E-value=65 Score=17.97 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHhccCC
Q 027748 39 AAILISSLPFSVISLP 54 (219)
Q Consensus 39 ~all~~~la~~~~~~~ 54 (219)
++++++++++++|+..
T Consensus 3 ~~~~~~~~~LsgCG~K 18 (24)
T PF13627_consen 3 LLLLALALALSGCGQK 18 (24)
T ss_pred HHHHHHHHHHHhcccC
Confidence 3446667778888764
No 29
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=25.48 E-value=1.4e+02 Score=23.66 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=23.5
Q ss_pred CCceEEEEEecCCCC------CCCCCCEEEEEEE
Q 027748 77 SDGLKYYDIVEGKGP------VAQKGSTVQVHFD 104 (219)
Q Consensus 77 ~sGl~y~~l~~G~G~------~~~~Gd~V~v~Y~ 104 (219)
..|..+..++.|++. +++.||.|+++++
T Consensus 43 ~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vt 76 (135)
T TIGR03096 43 VEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVE 76 (135)
T ss_pred eCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEE
Confidence 678999999998873 4689999999885
No 30
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=25.41 E-value=1.3e+02 Score=23.90 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.1
Q ss_pred CCchhhhhhcCccccEEEEEecCC
Q 027748 164 PPAMYSVTEGMKVGGKRTVIVPPE 187 (219)
Q Consensus 164 i~gl~~al~gMk~G~k~~v~vPp~ 187 (219)
.--+-.||.|.++|+.+.+..|..
T Consensus 118 ~SPlG~ALlG~~~Gd~v~v~~p~g 141 (151)
T TIGR01462 118 DSPLGKALIGKKVGDVVEVQTPKG 141 (151)
T ss_pred CCHHHHHHcCCCCCCEEEEEeCCC
Confidence 344889999999999999977664
No 31
>PLN03158 methionine aminopeptidase; Provisional
Probab=25.11 E-value=74 Score=29.69 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=20.5
Q ss_pred CCCCCCCEEEEEEEEEEcCeEEeec
Q 027748 91 PVAQKGSTVQVHFDCIFRGITAVSS 115 (219)
Q Consensus 91 ~~~~~Gd~V~v~Y~~~~~G~~~~ss 115 (219)
..+++||.|.++..++++|...|.+
T Consensus 216 r~L~~GDiV~iDvg~~~~GY~aD~t 240 (396)
T PLN03158 216 RKLEDGDIVNVDVTVYYKGCHGDLN 240 (396)
T ss_pred ccCCCCCEEEEEEeEEECCEEEeEE
Confidence 4689999999999998899766544
No 32
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=25.09 E-value=78 Score=28.02 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=20.5
Q ss_pred CCCCCCCEEEEEEEEEEcCeEEeec
Q 027748 91 PVAQKGSTVQVHFDCIFRGITAVSS 115 (219)
Q Consensus 91 ~~~~~Gd~V~v~Y~~~~~G~~~~ss 115 (219)
..++.||.|.++.-+.+||...|.+
T Consensus 73 ~~l~~GDvV~iD~G~~~dGY~aD~a 97 (295)
T TIGR00501 73 TVFKDGDVVKLDLGAHVDGYIADTA 97 (295)
T ss_pred ccCCCCCEEEEEEeEEECCEEEEEE
Confidence 4689999999999888899766654
No 33
>PRK08671 methionine aminopeptidase; Provisional
Probab=24.03 E-value=87 Score=27.60 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=20.5
Q ss_pred CCCCCCCEEEEEEEEEEcCeEEeec
Q 027748 91 PVAQKGSTVQVHFDCIFRGITAVSS 115 (219)
Q Consensus 91 ~~~~~Gd~V~v~Y~~~~~G~~~~ss 115 (219)
..+++||.|.+++-+.++|...|.+
T Consensus 70 ~~l~~GDvV~iD~G~~~dGY~aD~a 94 (291)
T PRK08671 70 RVFPEGDVVKLDLGAHVDGYIADTA 94 (291)
T ss_pred cccCCCCEEEEEEeEEECCEEEEEE
Confidence 4589999999999888899866654
No 34
>PRK12897 methionine aminopeptidase; Reviewed
Probab=23.90 E-value=86 Score=26.69 Aligned_cols=26 Identities=15% Similarity=0.135 Sum_probs=20.8
Q ss_pred CCCCCCCCEEEEEEEEEEcCeEEeec
Q 027748 90 GPVAQKGSTVQVHFDCIFRGITAVSS 115 (219)
Q Consensus 90 G~~~~~Gd~V~v~Y~~~~~G~~~~ss 115 (219)
+..++.||.|.+.+-+.++|...|.+
T Consensus 82 ~~~l~~Gd~V~iD~g~~~~GY~sD~t 107 (248)
T PRK12897 82 DVPLTEGDIVTIDMVVNLNGGLSDSA 107 (248)
T ss_pred CcccCCCCEEEEEeeEEECCEEEEEE
Confidence 34689999999999888888776654
No 35
>PRK12318 methionine aminopeptidase; Provisional
Probab=23.76 E-value=81 Score=27.90 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=21.2
Q ss_pred CCCCCCCCEEEEEEEEEEcCeEEeecc
Q 027748 90 GPVAQKGSTVQVHFDCIFRGITAVSSR 116 (219)
Q Consensus 90 G~~~~~Gd~V~v~Y~~~~~G~~~~ss~ 116 (219)
...++.||.|.+.+-+.++|...+.++
T Consensus 123 ~~~l~~GD~V~vD~g~~~~GY~aDitR 149 (291)
T PRK12318 123 DIPLKNGDIMNIDVSCIVDGYYGDCSR 149 (291)
T ss_pred CCccCCCCEEEEEEeEEECcEEEEEEE
Confidence 346899999999999888887665543
No 36
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=23.47 E-value=84 Score=27.70 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=20.7
Q ss_pred CCCCCCCCEEEEEEEEEEcCeEEeec
Q 027748 90 GPVAQKGSTVQVHFDCIFRGITAVSS 115 (219)
Q Consensus 90 G~~~~~Gd~V~v~Y~~~~~G~~~~ss 115 (219)
...++.||.|.++.-+.++|...|.+
T Consensus 68 ~~~l~~GDvV~iD~G~~~dGY~sD~a 93 (291)
T cd01088 68 DTVLKEGDVVKLDFGAHVDGYIADSA 93 (291)
T ss_pred CcccCCCCEEEEEEEEEECCEEEEEE
Confidence 34689999999998888898766554
No 37
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=21.87 E-value=1.5e+02 Score=23.83 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=19.1
Q ss_pred chhhhhhcCccccEEEEEecCC
Q 027748 166 AMYSVTEGMKVGGKRTVIVPPE 187 (219)
Q Consensus 166 gl~~al~gMk~G~k~~v~vPp~ 187 (219)
-+-.||.|.++|+.+.+.+|..
T Consensus 122 PlG~ALlGk~~GD~v~v~~p~g 143 (156)
T TIGR01461 122 PLARALLKKEVGDEVVVNTPAG 143 (156)
T ss_pred HHHHHHcCCCCCCEEEEEcCCC
Confidence 3889999999999999977654
No 38
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=21.77 E-value=2e+02 Score=22.61 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=18.6
Q ss_pred CchhhhhhcCccccEEEEEecC
Q 027748 165 PAMYSVTEGMKVGGKRTVIVPP 186 (219)
Q Consensus 165 ~gl~~al~gMk~G~k~~v~vPp 186 (219)
--+-.||.|.++|+.+.+..|.
T Consensus 93 SPlG~ALlG~~~Gd~v~v~~p~ 114 (137)
T PRK05753 93 APVGAALLGLSVGQSIDWPLPG 114 (137)
T ss_pred CHHHHHHcCCCCCCEEEEECCC
Confidence 4488999999999999987664
No 39
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=21.22 E-value=1.7e+02 Score=28.80 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=10.6
Q ss_pred CCCCCCEEEEEEE
Q 027748 92 VAQKGSTVQVHFD 104 (219)
Q Consensus 92 ~~~~Gd~V~v~Y~ 104 (219)
.++.||.|.|+++
T Consensus 79 r~~~Gd~v~v~v~ 91 (587)
T TIGR01480 79 RWREGDTVRLRVT 91 (587)
T ss_pred EEECCCEEEEEEE
Confidence 4689999998775
No 40
>PRK12896 methionine aminopeptidase; Reviewed
Probab=21.21 E-value=1e+02 Score=26.07 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=19.7
Q ss_pred CCCCCCCEEEEEEEEEEcCeEEeec
Q 027748 91 PVAQKGSTVQVHFDCIFRGITAVSS 115 (219)
Q Consensus 91 ~~~~~Gd~V~v~Y~~~~~G~~~~ss 115 (219)
..++.||.|.+++-+.++|...+.+
T Consensus 89 ~~l~~Gd~v~iD~g~~~~gY~aD~~ 113 (255)
T PRK12896 89 RVIKDGDLVNIDVSAYLDGYHGDTG 113 (255)
T ss_pred ccCCCCCEEEEEEeEEECcEEEeeE
Confidence 4689999999999888888655543
No 41
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.15 E-value=2.4e+02 Score=23.29 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=15.8
Q ss_pred CCCCCCCCEEEEEEEEEEcC
Q 027748 90 GPVAQKGSTVQVHFDCIFRG 109 (219)
Q Consensus 90 G~~~~~Gd~V~v~Y~~~~~G 109 (219)
...+..|+.+++.|+++..|
T Consensus 31 ~~~~v~g~~v~V~~~iyN~G 50 (181)
T PF05753_consen 31 NKYLVEGEDVTVTYTIYNVG 50 (181)
T ss_pred cccccCCcEEEEEEEEEECC
Confidence 34678899999999998644
No 42
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=21.09 E-value=1.6e+02 Score=23.47 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=19.4
Q ss_pred CchhhhhhcCccccEEEEEecCC
Q 027748 165 PAMYSVTEGMKVGGKRTVIVPPE 187 (219)
Q Consensus 165 ~gl~~al~gMk~G~k~~v~vPp~ 187 (219)
--+-.||.|.++|+.+.+.+|..
T Consensus 124 SPlG~aLlGk~~Gd~v~~~~p~g 146 (157)
T PRK00226 124 SPIARALIGKKVGDTVEVTTPGG 146 (157)
T ss_pred ChHHHHHhCCCCCCEEEEEcCCC
Confidence 34889999999999999977654
No 43
>TIGR00495 crvDNA_42K 42K curved DNA binding protein. Proteins identified by this model have been identified in a number of species as a nuclear (but not nucleolar) protein with a cell cycle dependence. Various names given to members of this family have included cell cycle protein p38-2G4, DNA-binding protein GBP16, and proliferation-associated protein 1. This protein is closely related to methionine aminopeptidase, a cobolt-binding protein.
Probab=20.23 E-value=1e+02 Score=28.56 Aligned_cols=26 Identities=19% Similarity=0.526 Sum_probs=21.5
Q ss_pred CCCCCCCEEEEEEEEEEcCeEEeecc
Q 027748 91 PVAQKGSTVQVHFDCIFRGITAVSSR 116 (219)
Q Consensus 91 ~~~~~Gd~V~v~Y~~~~~G~~~~ss~ 116 (219)
..++.||.|.+++-+.+||...+.++
T Consensus 99 ~~Lk~GDvVkIDlG~~idGY~aD~ar 124 (389)
T TIGR00495 99 YILKEGDVVKIDLGCHIDGFIALVAH 124 (389)
T ss_pred cCcCCCCEEEEEEEEEECCEEEEEEE
Confidence 35899999999999999998776553
No 44
>PF09122 DUF1930: Domain of unknown function (DUF1930); InterPro: IPR015206 This entry represents a domain found in 3-mercaptopyruvate sulphurtransferase which has no known function. This domain adopts a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase []. ; PDB: 1OKG_A.
Probab=20.06 E-value=61 Score=22.52 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=18.4
Q ss_pred CCCCchhhhhhcCccccEEEEEecCC
Q 027748 162 KPPPAMYSVTEGMKVGGKRTVIVPPE 187 (219)
Q Consensus 162 ~~i~gl~~al~gMk~G~k~~v~vPp~ 187 (219)
++=+-+..|+.-|..||+..++.-+.
T Consensus 32 ~PD~El~sA~~HlH~GEkA~V~FkS~ 57 (68)
T PF09122_consen 32 NPDAELKSALVHLHIGEKAQVFFKSQ 57 (68)
T ss_dssp S--HHHHHHHTT-BTT-EEEEEETTS
T ss_pred CCCHHHHHHHHHhhcCceeEEEEecC
Confidence 33466889999999999999988654
No 45
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=20.04 E-value=1.2e+02 Score=25.66 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=21.2
Q ss_pred CCCCCCCCEEEEEEEEEEcCeEEeecc
Q 027748 90 GPVAQKGSTVQVHFDCIFRGITAVSSR 116 (219)
Q Consensus 90 G~~~~~Gd~V~v~Y~~~~~G~~~~ss~ 116 (219)
...++.||.|.+.+-+.++|...|-++
T Consensus 81 ~~~l~~Gd~v~iD~g~~~~gY~aD~~R 107 (247)
T TIGR00500 81 KKVLKDGDIVNIDVGVIYDGYHGDTAK 107 (247)
T ss_pred CcccCCCCEEEEEEEEEECCEEEEEEE
Confidence 346899999999998888887665543
Done!