Query 027749
Match_columns 219
No_of_seqs 134 out of 1598
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 14:35:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027749.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027749hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 1.8E-41 4E-46 272.6 16.3 190 29-218 57-247 (476)
2 KOG0331 ATP-dependent RNA heli 100.0 2.6E-41 5.6E-46 285.4 17.6 185 34-218 92-283 (519)
3 PTZ00110 helicase; Provisional 100.0 2.9E-40 6.3E-45 289.0 21.4 194 25-218 122-320 (545)
4 COG0513 SrmB Superfamily II DN 100.0 9.7E-40 2.1E-44 283.4 21.7 186 33-218 29-217 (513)
5 PLN00206 DEAD-box ATP-dependen 100.0 5.8E-39 1.3E-43 279.7 21.8 194 24-218 112-312 (518)
6 KOG0328 Predicted ATP-dependen 100.0 1.3E-39 2.9E-44 252.6 14.0 209 11-219 5-213 (400)
7 KOG0338 ATP-dependent RNA heli 100.0 8.1E-40 1.8E-44 270.7 13.1 186 33-218 181-370 (691)
8 PRK04837 ATP-dependent RNA hel 100.0 2.1E-38 4.6E-43 270.7 22.0 188 31-218 6-202 (423)
9 PRK10590 ATP-dependent RNA hel 100.0 2.6E-38 5.6E-43 272.2 21.3 185 34-218 2-192 (456)
10 PRK11776 ATP-dependent RNA hel 100.0 2.8E-38 6E-43 272.6 21.3 186 33-218 4-190 (460)
11 PRK11634 ATP-dependent RNA hel 100.0 6.6E-38 1.4E-42 277.0 22.1 188 31-218 4-192 (629)
12 PRK04537 ATP-dependent RNA hel 100.0 3.4E-37 7.4E-42 270.6 21.7 186 33-218 9-204 (572)
13 PRK11192 ATP-dependent RNA hel 100.0 1.7E-36 3.8E-41 259.8 22.6 185 34-218 2-190 (434)
14 KOG0335 ATP-dependent RNA heli 100.0 7.9E-38 1.7E-42 260.6 12.9 204 16-219 55-275 (482)
15 KOG0339 ATP-dependent RNA heli 100.0 3.4E-37 7.4E-42 255.2 15.3 195 24-218 214-413 (731)
16 KOG0342 ATP-dependent RNA heli 100.0 6.1E-37 1.3E-41 252.7 15.6 188 32-219 81-274 (543)
17 cd00268 DEADc DEAD-box helicas 100.0 9.4E-36 2E-40 230.7 21.4 184 35-218 1-186 (203)
18 PTZ00424 helicase 45; Provisio 100.0 6.3E-36 1.4E-40 254.0 22.2 188 31-218 26-213 (401)
19 KOG0333 U5 snRNP-like RNA heli 100.0 9.9E-37 2.2E-41 253.1 15.3 214 5-218 217-464 (673)
20 KOG0348 ATP-dependent RNA heli 100.0 5.8E-37 1.2E-41 255.1 13.9 189 29-217 132-342 (708)
21 KOG0346 RNA helicase [RNA proc 100.0 7.4E-37 1.6E-41 249.4 13.4 187 33-219 19-214 (569)
22 PRK01297 ATP-dependent RNA hel 100.0 1.9E-35 4.2E-40 255.8 22.4 188 31-218 85-282 (475)
23 KOG0345 ATP-dependent RNA heli 100.0 1.8E-35 3.8E-40 243.0 17.8 185 33-217 4-199 (567)
24 KOG0343 RNA Helicase [RNA proc 100.0 3.8E-36 8.3E-41 251.0 13.9 188 29-217 65-257 (758)
25 KOG0336 ATP-dependent RNA heli 100.0 4.7E-36 1E-40 243.2 12.6 191 27-218 213-410 (629)
26 KOG0340 ATP-dependent RNA heli 100.0 4E-35 8.6E-40 233.7 14.3 187 31-217 5-195 (442)
27 KOG0334 RNA helicase [RNA proc 100.0 3E-35 6.4E-40 260.8 12.4 198 21-218 353-558 (997)
28 KOG0326 ATP-dependent RNA heli 100.0 2.1E-35 4.6E-40 232.7 10.1 188 31-218 83-270 (459)
29 KOG0341 DEAD-box protein abstr 100.0 7.8E-36 1.7E-40 240.5 6.8 198 21-218 158-369 (610)
30 KOG0347 RNA helicase [RNA proc 100.0 1.7E-33 3.7E-38 235.1 14.8 193 26-218 174-388 (731)
31 KOG0337 ATP-dependent RNA heli 100.0 7.9E-34 1.7E-38 230.6 11.0 187 32-218 20-207 (529)
32 PF00270 DEAD: DEAD/DEAH box h 100.0 5.5E-31 1.2E-35 198.0 18.4 160 57-217 1-163 (169)
33 TIGR03817 DECH_helic helicase/ 100.0 8.2E-31 1.8E-35 235.9 21.2 185 30-218 9-206 (742)
34 PRK00254 ski2-like helicase; P 100.0 1.3E-30 2.9E-35 235.3 19.4 179 34-218 2-181 (720)
35 PRK02362 ski2-like helicase; P 100.0 1E-30 2.2E-35 236.6 18.5 178 34-218 2-183 (737)
36 KOG0327 Translation initiation 100.0 1.5E-31 3.2E-36 215.4 11.2 190 30-219 23-213 (397)
37 KOG4284 DEAD box protein [Tran 100.0 5.3E-31 1.1E-35 223.8 12.4 191 27-218 19-211 (980)
38 KOG0329 ATP-dependent RNA heli 100.0 3.1E-29 6.7E-34 192.7 13.7 188 32-219 41-230 (387)
39 KOG0350 DEAD-box ATP-dependent 100.0 3.2E-29 7E-34 207.5 14.1 174 29-202 123-322 (620)
40 PRK13767 ATP-dependent helicas 100.0 9.9E-29 2.1E-33 226.3 17.1 178 40-218 18-219 (876)
41 PRK01172 ski2-like helicase; P 100.0 4.1E-28 8.9E-33 218.0 18.8 177 34-218 2-181 (674)
42 KOG0332 ATP-dependent RNA heli 100.0 5.2E-29 1.1E-33 200.0 10.3 190 25-217 82-275 (477)
43 COG1201 Lhr Lhr-like helicases 100.0 5.6E-28 1.2E-32 214.8 16.0 177 40-218 8-195 (814)
44 TIGR02621 cas3_GSU0051 CRISPR- 100.0 6.5E-27 1.4E-31 209.0 18.5 161 51-219 12-218 (844)
45 PRK09401 reverse gyrase; Revie 99.9 6.8E-26 1.5E-30 211.0 20.3 167 46-218 71-280 (1176)
46 TIGR00614 recQ_fam ATP-depende 99.9 7.2E-26 1.6E-30 195.7 14.7 158 50-218 6-174 (470)
47 PLN03137 ATP-dependent DNA hel 99.9 3.3E-25 7.2E-30 201.4 19.4 176 33-218 435-628 (1195)
48 COG1205 Distinct helicase fami 99.9 8E-25 1.7E-29 198.5 18.3 177 40-218 55-244 (851)
49 TIGR00580 mfd transcription-re 99.9 3.8E-24 8.3E-29 195.3 18.5 166 39-218 435-611 (926)
50 PRK11057 ATP-dependent DNA hel 99.9 2.5E-24 5.5E-29 191.0 16.8 168 40-218 9-186 (607)
51 KOG0344 ATP-dependent RNA heli 99.9 2.5E-25 5.5E-30 187.7 9.3 192 27-218 126-333 (593)
52 PRK14701 reverse gyrase; Provi 99.9 4.8E-24 1E-28 202.7 18.7 170 43-218 67-281 (1638)
53 COG1204 Superfamily II helicas 99.9 8.9E-25 1.9E-29 195.9 13.0 174 39-218 15-192 (766)
54 TIGR01054 rgy reverse gyrase. 99.9 7.5E-24 1.6E-28 197.6 18.4 140 44-189 67-213 (1171)
55 TIGR01389 recQ ATP-dependent D 99.9 4.8E-24 1E-28 189.2 16.2 161 47-218 4-174 (591)
56 PRK10917 ATP-dependent DNA hel 99.9 1.2E-23 2.6E-28 188.7 18.7 163 42-218 248-421 (681)
57 PRK10689 transcription-repair 99.9 4.6E-23 1E-27 191.8 18.4 164 41-218 586-760 (1147)
58 TIGR00643 recG ATP-dependent D 99.9 5.8E-23 1.3E-27 183.0 18.1 162 44-218 225-398 (630)
59 smart00487 DEXDc DEAD-like hel 99.9 2.7E-22 5.7E-27 153.3 19.3 168 50-218 3-172 (201)
60 PRK09751 putative ATP-dependen 99.9 4E-23 8.7E-28 194.0 15.1 144 75-218 1-171 (1490)
61 PHA02558 uvsW UvsW helicase; P 99.9 3.1E-22 6.7E-27 174.2 16.1 150 53-218 112-261 (501)
62 KOG0952 DNA/RNA helicase MER3/ 99.9 2.8E-22 6.1E-27 178.3 11.7 164 51-218 106-287 (1230)
63 PRK12899 secA preprotein trans 99.9 1.1E-21 2.3E-26 175.6 15.4 149 36-189 65-229 (970)
64 COG1202 Superfamily II helicas 99.9 4.5E-21 9.8E-26 162.0 14.7 183 33-218 194-384 (830)
65 COG1111 MPH1 ERCC4-like helica 99.9 9.1E-21 2E-25 158.3 16.0 161 54-218 14-174 (542)
66 KOG0354 DEAD-box like helicase 99.9 6.4E-21 1.4E-25 166.9 14.2 174 40-217 47-222 (746)
67 PRK13766 Hef nuclease; Provisi 99.9 3.7E-20 8E-25 169.2 18.7 160 53-216 13-172 (773)
68 COG4581 Superfamily II RNA hel 99.8 1.3E-20 2.8E-25 170.6 13.7 160 48-218 113-272 (1041)
69 PHA02653 RNA helicase NPH-II; 99.8 2.2E-20 4.8E-25 165.7 13.8 152 57-218 166-333 (675)
70 PRK11664 ATP-dependent RNA hel 99.8 6.2E-20 1.3E-24 166.5 16.4 150 59-218 9-161 (812)
71 TIGR03158 cas3_cyano CRISPR-as 99.8 6.6E-20 1.4E-24 153.3 15.3 154 59-218 1-193 (357)
72 TIGR01970 DEAH_box_HrpB ATP-de 99.8 9.6E-20 2.1E-24 165.0 17.3 150 59-218 6-158 (819)
73 cd00046 DEXDc DEAD-like helica 99.8 3.5E-19 7.7E-24 128.6 16.8 144 71-216 1-144 (144)
74 KOG0349 Putative DEAD-box RNA 99.8 1.2E-20 2.6E-25 155.0 8.1 116 102-217 287-411 (725)
75 PRK05580 primosome assembly pr 99.8 7E-19 1.5E-23 157.7 17.7 150 55-218 144-306 (679)
76 TIGR01587 cas3_core CRISPR-ass 99.8 1.1E-19 2.4E-24 152.3 10.6 142 72-218 1-167 (358)
77 COG0514 RecQ Superfamily II DN 99.8 5E-19 1.1E-23 153.0 11.9 162 46-218 7-178 (590)
78 PF04851 ResIII: Type III rest 99.8 7E-18 1.5E-22 127.9 13.6 153 55-218 3-184 (184)
79 KOG0947 Cytoplasmic exosomal R 99.8 1.7E-18 3.7E-23 153.2 10.7 154 50-218 293-446 (1248)
80 PRK09694 helicase Cas3; Provis 99.8 7.3E-18 1.6E-22 153.2 12.9 164 53-218 284-482 (878)
81 TIGR00963 secA preprotein tran 99.8 1.4E-17 3E-22 147.4 13.7 131 51-189 53-190 (745)
82 TIGR03714 secA2 accessory Sec 99.7 8.9E-17 1.9E-21 143.1 14.7 130 55-189 70-209 (762)
83 PRK09200 preprotein translocas 99.7 7.5E-17 1.6E-21 144.6 14.0 131 51-188 75-212 (790)
84 PRK12898 secA preprotein trans 99.7 8.4E-17 1.8E-21 141.5 13.8 130 51-188 100-255 (656)
85 COG1200 RecG RecG-like helicas 99.7 2.4E-16 5.2E-21 136.8 14.9 164 39-216 246-421 (677)
86 COG1061 SSL2 DNA or RNA helica 99.7 1.4E-16 3.1E-21 136.6 12.7 146 55-218 36-185 (442)
87 KOG0951 RNA helicase BRR2, DEA 99.7 1E-16 2.2E-21 145.3 11.7 174 39-218 295-486 (1674)
88 PRK13104 secA preprotein trans 99.7 3.5E-16 7.6E-21 140.6 14.6 128 55-189 82-216 (896)
89 TIGR00603 rad25 DNA repair hel 99.7 8.7E-16 1.9E-20 136.7 15.1 148 55-218 255-413 (732)
90 KOG0352 ATP-dependent DNA heli 99.7 5.9E-16 1.3E-20 127.3 11.5 166 43-219 6-189 (641)
91 KOG0948 Nuclear exosomal RNA h 99.7 1.6E-16 3.4E-21 138.0 7.9 150 55-218 129-278 (1041)
92 TIGR00595 priA primosomal prot 99.7 7.8E-16 1.7E-20 133.8 12.2 131 74-218 1-141 (505)
93 KOG0353 ATP-dependent DNA heli 99.7 1.6E-15 3.4E-20 123.4 12.8 174 33-217 71-261 (695)
94 PRK11448 hsdR type I restricti 99.6 3.1E-15 6.8E-20 139.6 14.5 158 55-217 413-595 (1123)
95 PRK11131 ATP-dependent RNA hel 99.6 5.6E-15 1.2E-19 137.8 15.4 147 57-218 76-230 (1294)
96 KOG0351 ATP-dependent DNA heli 99.6 1.6E-15 3.4E-20 138.2 11.0 164 43-217 251-431 (941)
97 COG1197 Mfd Transcription-repa 99.6 2.1E-14 4.6E-19 131.0 16.2 164 39-216 578-752 (1139)
98 KOG0949 Predicted helicase, DE 99.6 3.8E-15 8.2E-20 132.6 10.0 159 55-218 511-673 (1330)
99 PRK12904 preprotein translocas 99.6 2E-14 4.4E-19 129.0 12.6 130 51-188 78-214 (830)
100 TIGR01967 DEAH_box_HrpA ATP-de 99.6 4.5E-14 9.7E-19 132.1 15.0 148 61-218 73-223 (1283)
101 TIGR00348 hsdR type I site-spe 99.6 5.2E-14 1.1E-18 126.4 13.8 151 55-217 238-403 (667)
102 TIGR01407 dinG_rel DnaQ family 99.5 2.4E-13 5.2E-18 125.4 16.0 95 40-138 231-332 (850)
103 KOG0950 DNA polymerase theta/e 99.5 5.6E-14 1.2E-18 125.2 9.5 165 48-218 216-389 (1008)
104 PRK13107 preprotein translocas 99.5 1.8E-13 3.9E-18 123.1 11.7 131 51-189 79-216 (908)
105 COG1110 Reverse gyrase [DNA re 99.5 2.6E-12 5.6E-17 115.6 17.6 138 48-190 75-218 (1187)
106 TIGR03117 cas_csf4 CRISPR-asso 99.4 3.1E-12 6.6E-17 113.1 14.1 60 65-125 11-70 (636)
107 KOG0920 ATP-dependent RNA heli 99.4 7E-12 1.5E-16 113.4 15.7 173 40-219 158-332 (924)
108 PRK07246 bifunctional ATP-depe 99.4 4.5E-12 9.8E-17 116.0 14.5 84 51-139 242-330 (820)
109 PF00176 SNF2_N: SNF2 family N 99.4 5.6E-12 1.2E-16 102.8 12.8 138 69-216 24-172 (299)
110 PF07652 Flavi_DEAD: Flaviviru 99.4 3.2E-12 7E-17 91.7 8.9 133 69-217 3-137 (148)
111 COG4098 comFA Superfamily II D 99.4 1.2E-11 2.7E-16 99.6 12.7 145 55-218 97-245 (441)
112 COG1203 CRISPR-associated heli 99.4 3.3E-12 7.1E-17 116.0 10.4 164 55-218 195-382 (733)
113 smart00489 DEXDc3 DEAD-like he 99.4 1.5E-11 3.2E-16 100.1 13.1 70 55-124 8-84 (289)
114 smart00488 DEXDc2 DEAD-like he 99.4 1.5E-11 3.2E-16 100.1 13.1 70 55-124 8-84 (289)
115 COG1198 PriA Primosomal protei 99.3 1.2E-11 2.6E-16 110.4 12.7 151 55-218 198-361 (730)
116 COG1643 HrpA HrpA-like helicas 99.3 1.9E-11 4.1E-16 110.6 14.0 155 55-218 50-207 (845)
117 COG4096 HsdR Type I site-speci 99.3 7E-12 1.5E-16 111.0 10.5 149 54-218 164-322 (875)
118 PLN03142 Probable chromatin-re 99.2 2.2E-10 4.8E-15 106.1 15.5 153 55-216 169-329 (1033)
119 PRK08074 bifunctional ATP-depe 99.2 1.9E-10 4E-15 107.1 14.7 63 55-119 257-323 (928)
120 PRK13103 secA preprotein trans 99.2 9.6E-11 2.1E-15 105.9 12.0 127 55-188 82-215 (913)
121 PRK04914 ATP-dependent helicas 99.2 3.5E-10 7.5E-15 104.4 12.6 157 55-217 152-316 (956)
122 KOG0951 RNA helicase BRR2, DEA 99.2 8E-11 1.7E-15 107.8 7.6 150 55-217 1143-1300(1674)
123 PRK12906 secA preprotein trans 99.1 3.3E-10 7.2E-15 101.9 11.1 130 51-188 77-213 (796)
124 PRK12326 preprotein translocas 99.1 5.3E-10 1.2E-14 99.1 11.7 130 51-188 75-211 (764)
125 KOG0922 DEAH-box RNA helicase 99.1 1.5E-09 3.2E-14 94.4 13.9 154 55-218 51-207 (674)
126 PF07517 SecA_DEAD: SecA DEAD- 99.1 2.7E-09 5.9E-14 85.2 14.3 131 50-188 73-210 (266)
127 TIGR00604 rad3 DNA repair heli 99.1 1.7E-09 3.6E-14 98.4 12.5 73 52-124 7-83 (705)
128 TIGR02562 cas3_yersinia CRISPR 99.1 1.5E-09 3.1E-14 99.4 11.8 163 54-218 407-636 (1110)
129 KOG0925 mRNA splicing factor A 99.0 5.6E-09 1.2E-13 88.0 11.9 179 30-218 22-203 (699)
130 KOG1123 RNA polymerase II tran 99.0 7.5E-10 1.6E-14 93.5 5.2 148 55-219 302-461 (776)
131 COG0610 Type I site-specific r 99.0 9.6E-09 2.1E-13 95.7 12.7 137 71-216 274-413 (962)
132 CHL00122 secA preprotein trans 98.9 5.8E-09 1.3E-13 94.2 10.1 131 50-188 72-209 (870)
133 KOG0926 DEAH-box RNA helicase 98.9 1E-08 2.2E-13 90.9 11.2 151 61-218 262-426 (1172)
134 PF13086 AAA_11: AAA domain; P 98.9 1.6E-08 3.5E-13 79.2 11.4 68 55-123 1-75 (236)
135 PRK11747 dinG ATP-dependent DN 98.9 2.3E-08 5E-13 90.6 13.8 64 52-118 23-95 (697)
136 KOG0385 Chromatin remodeling c 98.9 2.2E-08 4.9E-13 88.3 12.9 152 55-216 167-327 (971)
137 COG1199 DinG Rad3-related DNA 98.9 7.7E-09 1.7E-13 93.5 10.2 74 49-124 9-86 (654)
138 COG4889 Predicted helicase [Ge 98.9 8.5E-09 1.9E-13 92.2 9.5 150 33-189 140-318 (1518)
139 PRK12902 secA preprotein trans 98.9 2.5E-08 5.5E-13 90.2 12.3 130 51-188 82-218 (939)
140 KOG0389 SNF2 family DNA-depend 98.9 1.5E-08 3.3E-13 89.5 9.4 155 55-216 399-562 (941)
141 PRK15483 type III restriction- 98.8 1E-07 2.2E-12 87.5 14.5 143 71-218 60-240 (986)
142 KOG0390 DNA repair protein, SN 98.8 1.4E-07 2.9E-12 84.7 14.2 153 55-216 238-414 (776)
143 PF13604 AAA_30: AAA domain; P 98.8 3.4E-08 7.3E-13 76.1 9.1 120 56-213 2-128 (196)
144 KOG0923 mRNA splicing factor A 98.8 1.3E-07 2.8E-12 82.5 12.6 160 51-219 261-423 (902)
145 KOG0387 Transcription-coupled 98.7 1.5E-07 3.2E-12 83.5 11.9 153 55-216 205-375 (923)
146 PF02562 PhoH: PhoH-like prote 98.7 2.3E-08 5E-13 76.9 6.0 145 54-214 3-154 (205)
147 PRK14873 primosome assembly pr 98.7 6.8E-08 1.5E-12 86.6 9.9 133 74-218 164-305 (665)
148 TIGR01447 recD exodeoxyribonuc 98.7 2.6E-07 5.6E-12 82.0 12.5 139 57-213 147-293 (586)
149 PRK10875 recD exonuclease V su 98.7 5.7E-07 1.2E-11 80.1 14.7 138 57-213 154-299 (615)
150 KOG0924 mRNA splicing factor A 98.7 4E-07 8.7E-12 79.8 12.0 155 53-218 354-512 (1042)
151 KOG1000 Chromatin remodeling p 98.6 2.8E-07 6.1E-12 78.1 10.1 151 54-216 197-348 (689)
152 TIGR01448 recD_rel helicase, p 98.6 1.2E-06 2.5E-11 79.9 13.9 124 54-213 322-450 (720)
153 PRK12903 secA preprotein trans 98.6 6.4E-07 1.4E-11 81.1 11.3 129 52-188 76-211 (925)
154 PF09848 DUF2075: Uncharacteri 98.6 6E-07 1.3E-11 75.3 10.3 108 72-202 3-117 (352)
155 KOG1802 RNA helicase nonsense 98.5 1.1E-06 2.4E-11 76.9 10.0 76 47-124 402-477 (935)
156 KOG0952 DNA/RNA helicase MER3/ 98.5 1.3E-07 2.9E-12 86.0 4.1 132 55-190 927-1061(1230)
157 PF13872 AAA_34: P-loop contai 98.4 6.2E-06 1.3E-10 66.6 12.4 155 55-217 37-221 (303)
158 PF02399 Herpes_ori_bp: Origin 98.4 2E-06 4.4E-11 77.4 10.0 135 72-218 51-192 (824)
159 PRK10536 hypothetical protein; 98.4 2.6E-06 5.5E-11 67.6 9.5 147 51-213 55-210 (262)
160 PF12340 DUF3638: Protein of u 98.4 9.4E-06 2E-10 63.3 11.4 152 33-189 3-186 (229)
161 KOG4439 RNA polymerase II tran 98.3 1.3E-06 2.8E-11 76.8 6.5 134 55-190 325-478 (901)
162 TIGR00376 DNA helicase, putati 98.3 1.1E-05 2.4E-10 72.5 12.3 66 55-123 157-223 (637)
163 PF06862 DUF1253: Protein of u 98.3 5E-06 1.1E-10 70.9 9.5 118 101-219 37-228 (442)
164 PRK12900 secA preprotein trans 98.3 2E-06 4.3E-11 79.0 6.8 127 55-188 138-271 (1025)
165 PRK13889 conjugal transfer rel 98.3 2.6E-05 5.6E-10 72.9 14.2 121 55-213 346-468 (988)
166 KOG1803 DNA helicase [Replicat 98.3 3.2E-06 6.9E-11 73.4 7.5 66 54-122 184-250 (649)
167 KOG0392 SNF2 family DNA-depend 98.3 6.9E-06 1.5E-10 76.2 9.9 154 55-216 975-1138(1549)
168 KOG1132 Helicase of the DEAD s 98.2 8.9E-06 1.9E-10 73.3 10.0 73 55-127 21-136 (945)
169 PF13245 AAA_19: Part of AAA d 98.2 7.1E-06 1.5E-10 53.1 7.0 52 70-121 10-62 (76)
170 TIGR02768 TraA_Ti Ti-type conj 98.2 4.6E-05 1E-09 69.9 14.7 121 55-213 352-474 (744)
171 KOG1002 Nucleotide excision re 98.2 1.1E-05 2.3E-10 68.9 9.4 128 55-190 184-331 (791)
172 COG3587 Restriction endonuclea 98.2 5.2E-06 1.1E-10 74.6 8.0 144 71-219 75-245 (985)
173 KOG0384 Chromodomain-helicase 98.1 8.9E-06 1.9E-10 75.5 8.3 148 54-215 369-534 (1373)
174 PRK12901 secA preprotein trans 98.1 8.7E-06 1.9E-10 75.1 6.9 127 55-188 169-303 (1112)
175 PRK13826 Dtr system oriT relax 98.1 0.00011 2.5E-09 69.2 14.4 135 40-213 367-503 (1102)
176 PF00580 UvrD-helicase: UvrD/R 98.1 1.4E-05 3E-10 65.4 7.7 69 56-126 1-70 (315)
177 KOG2340 Uncharacterized conser 98.1 2.5E-05 5.4E-10 67.0 9.1 150 53-203 214-442 (698)
178 PF14617 CMS1: U3-containing 9 98.0 2.4E-05 5.2E-10 62.1 6.8 86 99-185 124-211 (252)
179 PF13401 AAA_22: AAA domain; P 98.0 0.00013 2.9E-09 51.9 9.9 21 69-89 3-23 (131)
180 KOG0391 SNF2 family DNA-depend 97.9 7.2E-05 1.6E-09 69.6 9.7 151 55-215 615-774 (1958)
181 COG1875 NYN ribonuclease and A 97.9 7.4E-05 1.6E-09 61.7 8.5 144 50-213 223-385 (436)
182 cd00009 AAA The AAA+ (ATPases 97.9 0.00038 8.3E-09 49.8 11.2 25 70-95 19-43 (151)
183 PF05970 PIF1: PIF1-like helic 97.9 9.4E-05 2E-09 62.4 8.8 59 56-117 2-66 (364)
184 COG0556 UvrB Helicase subunit 97.8 4.3E-05 9.3E-10 65.8 6.3 73 55-133 12-89 (663)
185 KOG1805 DNA replication helica 97.8 0.00014 2.9E-09 66.6 9.7 143 37-190 655-811 (1100)
186 KOG0388 SNF2 family DNA-depend 97.8 7.5E-05 1.6E-09 66.3 7.4 148 58-216 570-733 (1185)
187 KOG0989 Replication factor C, 97.8 0.00014 3.1E-09 58.7 8.4 45 170-215 124-168 (346)
188 COG0553 HepA Superfamily II DN 97.8 0.00027 5.8E-09 65.9 11.0 135 54-190 337-487 (866)
189 PRK12723 flagellar biosynthesi 97.7 0.00054 1.2E-08 58.1 11.2 119 71-217 175-298 (388)
190 KOG0386 Chromatin remodeling c 97.7 6.5E-05 1.4E-09 68.8 5.8 152 54-215 393-553 (1157)
191 KOG4150 Predicted ATP-dependen 97.7 4.2E-05 9E-10 66.4 4.2 172 44-217 275-462 (1034)
192 smart00382 AAA ATPases associa 97.7 0.00025 5.4E-09 50.3 7.6 41 70-113 2-42 (148)
193 KOG1131 RNA polymerase II tran 97.7 0.001 2.2E-08 57.5 11.9 73 52-124 13-90 (755)
194 TIGR01075 uvrD DNA helicase II 97.6 0.00024 5.1E-09 65.2 8.6 108 54-186 3-114 (715)
195 PF03354 Terminase_1: Phage Te 97.6 0.00044 9.5E-09 60.5 9.6 70 58-127 1-80 (477)
196 KOG1015 Transcription regulato 97.6 0.0006 1.3E-08 62.6 10.3 140 71-216 697-859 (1567)
197 PRK10919 ATP-dependent DNA hel 97.6 0.00031 6.8E-09 63.9 8.8 87 55-164 2-89 (672)
198 PRK11773 uvrD DNA-dependent he 97.6 0.00047 1E-08 63.3 9.9 108 55-186 9-119 (721)
199 PRK14712 conjugal transfer nic 97.6 0.00079 1.7E-08 65.8 11.4 63 55-118 835-901 (1623)
200 PHA03368 DNA packaging termina 97.6 0.00098 2.1E-08 59.5 10.7 135 69-218 253-392 (738)
201 PRK13709 conjugal transfer nic 97.5 0.0012 2.7E-08 65.2 12.1 122 55-213 967-1097(1747)
202 PRK11054 helD DNA helicase IV; 97.5 0.0015 3.2E-08 59.5 11.6 70 54-125 195-265 (684)
203 PF05127 Helicase_RecD: Helica 97.5 8.5E-05 1.8E-09 55.9 3.0 122 74-216 1-123 (177)
204 PRK04296 thymidine kinase; Pro 97.5 0.00036 7.8E-09 53.4 6.6 36 71-109 3-38 (190)
205 PHA02533 17 large terminase pr 97.5 0.0018 4E-08 57.2 11.4 123 55-189 59-183 (534)
206 PRK00149 dnaA chromosomal repl 97.5 0.00093 2E-08 58.0 9.5 105 71-218 149-255 (450)
207 PRK08181 transposase; Validate 97.4 0.0017 3.7E-08 52.4 10.2 57 57-117 89-149 (269)
208 COG3421 Uncharacterized protei 97.4 0.0004 8.6E-09 60.8 6.6 135 75-219 2-168 (812)
209 PRK05642 DNA replication initi 97.4 0.00051 1.1E-08 54.4 6.7 45 174-218 96-141 (234)
210 TIGR02760 TraI_TIGR conjugativ 97.4 0.0029 6.2E-08 63.8 13.2 133 55-213 429-564 (1960)
211 COG0653 SecA Preprotein transl 97.4 0.0007 1.5E-08 61.7 8.1 127 55-188 80-213 (822)
212 TIGR00362 DnaA chromosomal rep 97.3 0.0014 2.9E-08 56.2 9.1 37 71-108 137-173 (405)
213 PRK06893 DNA replication initi 97.3 0.00064 1.4E-08 53.6 6.5 45 174-218 90-136 (229)
214 cd01120 RecA-like_NTPases RecA 97.3 0.0021 4.5E-08 47.1 8.8 38 73-113 2-39 (165)
215 TIGR01073 pcrA ATP-dependent D 97.3 0.0019 4E-08 59.5 10.1 109 54-186 3-114 (726)
216 TIGR02785 addA_Gpos recombinat 97.3 0.0021 4.5E-08 62.4 10.6 122 56-186 2-126 (1232)
217 TIGR01547 phage_term_2 phage t 97.3 0.0013 2.8E-08 56.1 8.1 136 72-217 3-141 (396)
218 PRK00411 cdc6 cell division co 97.3 0.0023 5E-08 54.4 9.7 36 71-107 56-91 (394)
219 PF00308 Bac_DnaA: Bacterial d 97.3 0.0024 5.2E-08 50.0 8.8 105 72-218 36-142 (219)
220 TIGR01074 rep ATP-dependent DN 97.2 0.0024 5.2E-08 58.2 9.9 68 56-125 2-70 (664)
221 PHA03333 putative ATPase subun 97.2 0.012 2.5E-07 53.1 13.7 138 68-218 185-334 (752)
222 PRK14722 flhF flagellar biosyn 97.2 0.0048 1E-07 52.0 10.9 22 70-91 137-158 (374)
223 PRK08084 DNA replication initi 97.2 0.0013 2.7E-08 52.2 7.0 43 176-218 98-142 (235)
224 KOG0921 Dosage compensation co 97.2 0.0013 2.8E-08 60.1 7.5 145 63-219 386-538 (1282)
225 PRK14087 dnaA chromosomal repl 97.2 0.0013 2.9E-08 57.0 7.4 106 71-217 142-249 (450)
226 PRK05707 DNA polymerase III su 97.2 0.0045 9.8E-08 51.5 10.2 134 56-213 4-143 (328)
227 TIGR03420 DnaA_homol_Hda DnaA 97.2 0.0035 7.7E-08 48.9 9.2 41 176-216 91-132 (226)
228 TIGR00631 uvrb excinuclease AB 97.2 0.0059 1.3E-07 55.4 11.6 67 55-127 9-80 (655)
229 PRK14956 DNA polymerase III su 97.2 0.0023 5E-08 55.5 8.6 19 72-90 42-60 (484)
230 PRK08769 DNA polymerase III su 97.2 0.004 8.7E-08 51.5 9.6 140 54-214 3-151 (319)
231 PRK06921 hypothetical protein; 97.2 0.011 2.5E-07 47.6 11.9 38 69-108 116-153 (266)
232 PRK14974 cell division protein 97.2 0.011 2.4E-07 49.3 12.0 43 175-217 222-265 (336)
233 PRK06526 transposase; Provisio 97.1 0.0017 3.7E-08 52.0 7.0 22 67-88 95-116 (254)
234 PRK07003 DNA polymerase III su 97.1 0.0078 1.7E-07 54.9 11.7 39 174-213 118-156 (830)
235 PRK14088 dnaA chromosomal repl 97.1 0.0034 7.4E-08 54.3 9.3 38 71-109 131-168 (440)
236 PF00448 SRP54: SRP54-type pro 97.1 0.011 2.4E-07 45.4 11.2 120 73-217 4-126 (196)
237 COG1444 Predicted P-loop ATPas 97.1 0.012 2.7E-07 53.5 12.9 152 44-217 203-357 (758)
238 COG4626 Phage terminase-like p 97.1 0.0056 1.2E-07 53.5 10.3 145 55-213 61-222 (546)
239 PRK11889 flhF flagellar biosyn 97.1 0.011 2.4E-07 50.2 11.7 20 71-90 242-261 (436)
240 PF13177 DNA_pol3_delta2: DNA 97.1 0.0022 4.9E-08 47.7 7.0 41 174-215 101-141 (162)
241 PRK08727 hypothetical protein; 97.1 0.0028 6E-08 50.1 7.9 43 174-217 92-136 (233)
242 TIGR02760 TraI_TIGR conjugativ 97.1 0.0045 9.8E-08 62.5 10.8 63 54-118 1018-1085(1960)
243 PRK12323 DNA polymerase III su 97.1 0.0042 9E-08 55.8 9.2 39 174-213 123-161 (700)
244 COG0470 HolB ATPase involved i 97.1 0.0081 1.8E-07 49.5 10.6 39 174-213 108-146 (325)
245 PLN03025 replication factor C 97.1 0.0072 1.6E-07 50.1 10.2 38 174-212 98-135 (319)
246 PRK12402 replication factor C 97.0 0.014 2.9E-07 48.5 11.8 39 174-213 124-162 (337)
247 PHA03372 DNA packaging termina 97.0 0.0056 1.2E-07 54.2 9.3 132 69-217 201-338 (668)
248 PRK14951 DNA polymerase III su 97.0 0.0043 9.2E-08 55.7 8.8 39 174-213 123-161 (618)
249 PRK08116 hypothetical protein; 97.0 0.0037 8.1E-08 50.5 7.8 43 71-117 115-157 (268)
250 PRK08903 DnaA regulatory inact 97.0 0.0044 9.5E-08 48.6 8.1 42 175-217 90-132 (227)
251 PRK05703 flhF flagellar biosyn 97.0 0.017 3.7E-07 49.8 11.9 20 70-89 221-240 (424)
252 PRK14964 DNA polymerase III su 97.0 0.0083 1.8E-07 52.4 10.0 117 71-213 36-153 (491)
253 TIGR02881 spore_V_K stage V sp 96.9 0.0069 1.5E-07 48.7 8.8 18 71-88 43-60 (261)
254 PRK07764 DNA polymerase III su 96.9 0.011 2.3E-07 55.1 11.0 39 174-213 119-157 (824)
255 PRK14958 DNA polymerase III su 96.9 0.0088 1.9E-07 52.7 10.1 39 174-213 118-156 (509)
256 COG1419 FlhF Flagellar GTP-bin 96.9 0.0065 1.4E-07 51.3 8.6 89 70-160 203-291 (407)
257 PF05621 TniB: Bacterial TniB 96.9 0.0076 1.6E-07 49.1 8.6 117 71-212 62-186 (302)
258 cd01122 GP4d_helicase GP4d_hel 96.9 0.007 1.5E-07 48.7 8.6 121 66-190 26-155 (271)
259 cd01124 KaiC KaiC is a circadi 96.9 0.01 2.2E-07 44.8 9.0 48 73-124 2-49 (187)
260 PF05876 Terminase_GpA: Phage 96.9 0.0064 1.4E-07 54.2 8.6 125 55-188 16-147 (557)
261 KOG0953 Mitochondrial RNA heli 96.8 0.0018 3.9E-08 56.3 4.7 97 73-190 194-290 (700)
262 PRK14949 DNA polymerase III su 96.8 0.0086 1.9E-07 55.6 9.4 38 174-212 118-155 (944)
263 PHA02544 44 clamp loader, smal 96.8 0.0089 1.9E-07 49.3 8.7 39 175-213 100-138 (316)
264 TIGR02782 TrbB_P P-type conjug 96.8 0.0093 2E-07 49.0 8.7 67 44-113 107-174 (299)
265 PRK13833 conjugal transfer pro 96.8 0.0074 1.6E-07 50.0 8.0 65 46-113 121-186 (323)
266 PRK07952 DNA replication prote 96.8 0.019 4.1E-07 45.7 10.0 34 71-107 100-133 (244)
267 PRK06835 DNA replication prote 96.8 0.0079 1.7E-07 50.0 8.2 44 69-116 182-225 (329)
268 TIGR02928 orc1/cdc6 family rep 96.8 0.016 3.4E-07 48.8 10.2 24 71-95 41-64 (365)
269 TIGR00596 rad1 DNA repair prot 96.8 0.0024 5.2E-08 59.0 5.5 67 151-217 7-73 (814)
270 COG2805 PilT Tfp pilus assembl 96.8 0.01 2.2E-07 48.2 8.3 26 72-98 127-152 (353)
271 PRK06995 flhF flagellar biosyn 96.7 0.051 1.1E-06 47.5 13.1 91 70-162 256-346 (484)
272 PRK14960 DNA polymerase III su 96.7 0.012 2.6E-07 53.0 9.5 39 174-213 117-155 (702)
273 PF03969 AFG1_ATPase: AFG1-lik 96.7 0.024 5.1E-07 47.8 10.8 108 70-218 62-170 (362)
274 COG2256 MGS1 ATPase related to 96.7 0.0048 1E-07 51.8 6.4 19 71-89 49-67 (436)
275 PRK14955 DNA polymerase III su 96.7 0.016 3.4E-07 49.6 9.6 40 173-213 125-164 (397)
276 PRK14086 dnaA chromosomal repl 96.7 0.013 2.9E-07 52.4 9.3 42 174-216 376-419 (617)
277 PRK09111 DNA polymerase III su 96.7 0.012 2.7E-07 52.7 9.3 40 173-213 130-169 (598)
278 PRK12377 putative replication 96.7 0.033 7.3E-07 44.4 10.7 45 71-119 102-146 (248)
279 PF13173 AAA_14: AAA domain 96.6 0.037 8E-07 39.3 9.9 37 175-214 61-97 (128)
280 PF05729 NACHT: NACHT domain 96.6 0.018 3.8E-07 42.3 8.5 38 178-215 84-129 (166)
281 KOG1001 Helicase-like transcri 96.6 0.0099 2.1E-07 53.9 8.3 109 72-191 154-270 (674)
282 PRK00440 rfc replication facto 96.6 0.024 5.3E-07 46.6 10.1 38 175-213 102-139 (319)
283 PRK07994 DNA polymerase III su 96.6 0.026 5.7E-07 51.0 10.6 38 174-212 118-155 (647)
284 PRK04195 replication factor C 96.6 0.031 6.7E-07 49.0 10.8 18 70-87 39-56 (482)
285 PRK12422 chromosomal replicati 96.6 0.015 3.3E-07 50.4 8.7 42 174-216 201-244 (445)
286 PRK06871 DNA polymerase III su 96.5 0.0034 7.5E-08 52.0 4.5 133 56-213 3-144 (325)
287 PRK14962 DNA polymerase III su 96.5 0.024 5.3E-07 49.5 9.9 33 173-206 115-147 (472)
288 PRK14969 DNA polymerase III su 96.5 0.025 5.5E-07 50.1 10.1 39 174-213 118-156 (527)
289 PRK11331 5-methylcytosine-spec 96.5 0.018 3.9E-07 49.7 8.7 34 55-88 179-212 (459)
290 PRK13894 conjugal transfer ATP 96.5 0.014 3.1E-07 48.3 7.9 67 44-113 123-190 (319)
291 CHL00181 cbbX CbbX; Provisiona 96.5 0.029 6.3E-07 45.8 9.5 20 70-89 59-78 (287)
292 PRK05298 excinuclease ABC subu 96.5 0.032 7E-07 50.8 10.7 67 55-127 12-83 (652)
293 PRK08691 DNA polymerase III su 96.5 0.025 5.3E-07 51.4 9.6 39 174-213 118-156 (709)
294 PRK14957 DNA polymerase III su 96.5 0.05 1.1E-06 48.3 11.4 39 174-213 118-156 (546)
295 PRK14965 DNA polymerase III su 96.5 0.029 6.3E-07 50.3 10.1 39 174-213 118-156 (576)
296 PRK06904 replicative DNA helic 96.5 0.04 8.7E-07 48.2 10.7 140 69-214 220-382 (472)
297 PF03237 Terminase_6: Terminas 96.4 0.057 1.2E-06 45.0 11.4 118 74-203 1-125 (384)
298 PF06745 KaiC: KaiC; InterPro 96.4 0.02 4.2E-07 44.9 8.0 132 69-216 18-160 (226)
299 PRK14961 DNA polymerase III su 96.4 0.018 3.9E-07 48.7 8.1 39 174-213 118-156 (363)
300 PTZ00112 origin recognition co 96.4 0.087 1.9E-06 49.2 12.7 29 174-203 868-896 (1164)
301 PRK09112 DNA polymerase III su 96.4 0.049 1.1E-06 45.8 10.6 39 174-213 140-178 (351)
302 PRK06090 DNA polymerase III su 96.4 0.018 3.9E-07 47.7 7.8 135 55-214 3-146 (319)
303 PRK06645 DNA polymerase III su 96.4 0.028 6E-07 49.5 9.4 37 173-210 126-162 (507)
304 PRK14723 flhF flagellar biosyn 96.3 0.045 9.8E-07 50.3 10.6 21 71-91 186-206 (767)
305 PF00004 AAA: ATPase family as 96.3 0.066 1.4E-06 37.6 9.6 16 176-191 59-74 (132)
306 PF03796 DnaB_C: DnaB-like hel 96.3 0.023 4.9E-07 45.6 7.9 141 69-214 18-178 (259)
307 PRK14963 DNA polymerase III su 96.3 0.034 7.4E-07 49.0 9.4 22 73-95 39-60 (504)
308 TIGR02880 cbbX_cfxQ probable R 96.3 0.042 9E-07 44.8 9.3 18 70-87 58-75 (284)
309 PRK06731 flhF flagellar biosyn 96.3 0.08 1.7E-06 42.8 10.8 19 71-89 76-94 (270)
310 PRK07004 replicative DNA helic 96.3 0.021 4.7E-07 49.7 7.9 141 69-214 212-372 (460)
311 PRK14952 DNA polymerase III su 96.2 0.04 8.7E-07 49.4 9.6 39 174-213 117-155 (584)
312 PRK05896 DNA polymerase III su 96.2 0.029 6.2E-07 50.2 8.6 39 174-213 118-156 (605)
313 COG3973 Superfamily I DNA and 96.2 0.037 7.9E-07 49.1 9.0 59 69-127 225-286 (747)
314 PRK08451 DNA polymerase III su 96.2 0.039 8.5E-07 48.8 9.4 39 174-213 116-154 (535)
315 TIGR03015 pepcterm_ATPase puta 96.2 0.26 5.7E-06 39.4 13.6 34 55-88 23-61 (269)
316 TIGR03877 thermo_KaiC_1 KaiC d 96.2 0.051 1.1E-06 43.0 9.2 53 69-125 20-72 (237)
317 PRK06964 DNA polymerase III su 96.2 0.032 7E-07 46.6 8.3 40 174-214 131-170 (342)
318 PRK07993 DNA polymerase III su 96.2 0.014 3.1E-07 48.6 6.3 135 56-214 3-146 (334)
319 cd00984 DnaB_C DnaB helicase C 96.2 0.054 1.2E-06 42.8 9.3 40 68-109 11-50 (242)
320 PRK14959 DNA polymerase III su 96.2 0.04 8.8E-07 49.5 9.2 20 71-90 39-58 (624)
321 TIGR03600 phage_DnaB phage rep 96.2 0.037 8.1E-07 47.7 8.8 142 67-214 191-352 (421)
322 PRK05563 DNA polymerase III su 96.1 0.044 9.5E-07 49.0 9.4 37 173-210 117-153 (559)
323 PRK08939 primosomal protein Dn 96.1 0.033 7.1E-07 45.9 8.0 16 70-85 156-171 (306)
324 PRK08699 DNA polymerase III su 96.1 0.07 1.5E-06 44.4 10.0 144 56-213 2-150 (325)
325 PRK08506 replicative DNA helic 96.1 0.036 7.8E-07 48.5 8.6 138 69-214 191-350 (472)
326 PRK14954 DNA polymerase III su 96.1 0.035 7.6E-07 50.1 8.6 122 72-213 40-164 (620)
327 TIGR02525 plasmid_TraJ plasmid 96.1 0.022 4.7E-07 48.2 6.8 27 69-96 148-174 (372)
328 COG2909 MalT ATP-dependent tra 96.0 0.028 6.2E-07 51.5 7.6 44 175-218 129-172 (894)
329 PRK12726 flagellar biosynthesi 96.0 0.087 1.9E-06 44.7 9.9 20 70-89 206-225 (407)
330 PRK08533 flagellar accessory p 96.0 0.14 3.1E-06 40.3 10.7 53 68-124 22-74 (230)
331 PRK14948 DNA polymerase III su 96.0 0.082 1.8E-06 47.8 10.3 37 174-211 120-156 (620)
332 TIGR00678 holB DNA polymerase 96.0 0.16 3.4E-06 38.6 10.6 40 173-213 94-133 (188)
333 PRK13851 type IV secretion sys 96.0 0.02 4.3E-07 47.9 6.0 45 65-113 157-201 (344)
334 PRK14950 DNA polymerase III su 95.9 0.069 1.5E-06 48.1 9.7 38 173-211 118-155 (585)
335 KOG0298 DEAD box-containing he 95.9 0.018 3.9E-07 54.6 6.1 97 69-167 373-484 (1394)
336 PRK05748 replicative DNA helic 95.9 0.079 1.7E-06 46.1 9.7 142 69-215 202-364 (448)
337 COG4962 CpaF Flp pilus assembl 95.9 0.037 8E-07 45.8 7.2 61 47-113 151-212 (355)
338 PRK05973 replicative DNA helic 95.9 0.18 4E-06 39.9 10.8 84 36-124 21-114 (237)
339 PRK08006 replicative DNA helic 95.9 0.11 2.3E-06 45.5 10.4 140 69-214 223-384 (471)
340 TIGR00767 rho transcription te 95.9 0.093 2E-06 44.7 9.6 41 68-109 166-206 (415)
341 PRK13900 type IV secretion sys 95.9 0.042 9.1E-07 45.8 7.6 44 66-113 156-199 (332)
342 COG1435 Tdk Thymidine kinase [ 95.9 0.19 4.2E-06 38.4 10.3 104 72-203 6-109 (201)
343 TIGR03499 FlhF flagellar biosy 95.8 0.049 1.1E-06 44.4 7.5 19 71-89 195-213 (282)
344 PRK07471 DNA polymerase III su 95.8 0.087 1.9E-06 44.5 9.2 40 174-214 140-179 (365)
345 PRK00771 signal recognition pa 95.8 0.078 1.7E-06 45.9 9.0 18 72-89 97-114 (437)
346 KOG0991 Replication factor C, 95.8 0.036 7.7E-07 43.6 6.2 35 173-208 111-145 (333)
347 PRK08840 replicative DNA helic 95.7 0.12 2.5E-06 45.3 10.1 142 67-214 214-377 (464)
348 COG1474 CDC6 Cdc6-related prot 95.7 0.13 2.9E-06 43.4 10.0 28 175-203 123-150 (366)
349 PTZ00293 thymidine kinase; Pro 95.7 0.11 2.4E-06 40.4 8.7 38 70-110 4-41 (211)
350 PRK12727 flagellar biosynthesi 95.7 0.14 3.1E-06 45.2 10.2 21 69-89 349-369 (559)
351 PRK06620 hypothetical protein; 95.7 0.028 6.1E-07 43.8 5.5 14 71-84 45-58 (214)
352 KOG2228 Origin recognition com 95.6 0.14 3.1E-06 42.4 9.4 55 160-214 122-179 (408)
353 PRK04841 transcriptional regul 95.6 0.17 3.7E-06 47.7 11.4 41 177-217 123-163 (903)
354 PRK14971 DNA polymerase III su 95.6 0.13 2.8E-06 46.6 10.0 40 173-213 119-158 (614)
355 PRK09183 transposase/IS protei 95.6 0.072 1.6E-06 42.8 7.6 21 67-87 99-119 (259)
356 TIGR03881 KaiC_arch_4 KaiC dom 95.5 0.21 4.6E-06 39.1 10.1 52 69-124 19-70 (229)
357 KOG2028 ATPase related to the 95.5 0.061 1.3E-06 45.1 7.0 48 71-121 163-210 (554)
358 PRK06305 DNA polymerase III su 95.5 0.18 3.9E-06 43.9 10.3 39 174-213 120-158 (451)
359 TIGR02397 dnaX_nterm DNA polym 95.5 0.11 2.4E-06 43.5 8.8 39 173-212 115-153 (355)
360 PLN03187 meiotic recombination 95.5 0.42 9.1E-06 40.1 12.0 39 16-54 15-53 (344)
361 PRK13342 recombination factor 95.5 0.075 1.6E-06 45.7 7.9 18 71-88 37-54 (413)
362 PRK14721 flhF flagellar biosyn 95.4 0.069 1.5E-06 45.9 7.5 42 70-111 191-232 (420)
363 PF01637 Arch_ATPase: Archaeal 95.4 0.2 4.3E-06 38.8 9.5 42 158-203 105-151 (234)
364 PRK07940 DNA polymerase III su 95.4 0.12 2.6E-06 44.1 8.7 39 174-213 116-154 (394)
365 TIGR00635 ruvB Holliday juncti 95.4 0.046 9.9E-07 44.8 6.1 16 71-86 31-46 (305)
366 COG3267 ExeA Type II secretory 95.4 0.29 6.2E-06 39.0 10.0 31 65-96 45-76 (269)
367 PRK08760 replicative DNA helic 95.3 0.21 4.5E-06 43.9 10.2 140 69-214 228-387 (476)
368 TIGR02524 dot_icm_DotB Dot/Icm 95.3 0.056 1.2E-06 45.6 6.4 26 69-95 133-158 (358)
369 TIGR00064 ftsY signal recognit 95.3 0.21 4.6E-06 40.5 9.5 21 71-91 73-93 (272)
370 PRK11823 DNA repair protein Ra 95.3 0.27 5.9E-06 42.7 10.7 88 70-189 80-170 (446)
371 KOG0331 ATP-dependent RNA heli 95.2 0.12 2.5E-06 45.4 8.3 94 86-190 327-432 (519)
372 PRK05636 replicative DNA helic 95.2 0.099 2.1E-06 46.1 8.0 138 71-214 266-423 (505)
373 PRK06321 replicative DNA helic 95.2 0.22 4.8E-06 43.6 10.1 151 56-214 210-387 (472)
374 KOG0741 AAA+-type ATPase [Post 95.2 0.14 3E-06 45.0 8.4 69 38-111 494-574 (744)
375 PRK09376 rho transcription ter 95.2 0.22 4.7E-06 42.5 9.4 65 58-124 154-221 (416)
376 COG0593 DnaA ATPase involved i 95.1 0.18 4E-06 43.0 8.9 43 175-217 175-219 (408)
377 cd01121 Sms Sms (bacterial rad 95.1 0.3 6.5E-06 41.4 10.2 88 70-189 82-172 (372)
378 PRK12724 flagellar biosynthesi 95.1 0.36 7.8E-06 41.5 10.6 21 72-92 225-245 (432)
379 TIGR00665 DnaB replicative DNA 95.1 0.29 6.2E-06 42.4 10.3 139 69-214 194-353 (434)
380 TIGR01243 CDC48 AAA family ATP 95.0 0.11 2.3E-06 48.2 8.0 51 33-86 175-228 (733)
381 PRK14953 DNA polymerase III su 95.0 0.32 6.9E-06 42.8 10.5 38 173-211 117-154 (486)
382 COG2804 PulE Type II secretory 95.0 0.069 1.5E-06 46.4 6.2 41 57-98 243-285 (500)
383 PRK06647 DNA polymerase III su 95.0 0.19 4.1E-06 45.0 9.2 38 173-211 117-154 (563)
384 KOG1133 Helicase of the DEAD s 95.0 0.043 9.2E-07 49.3 4.9 41 55-95 15-59 (821)
385 PRK04328 hypothetical protein; 95.0 0.39 8.4E-06 38.3 10.1 53 69-125 22-74 (249)
386 cd01130 VirB11-like_ATPase Typ 94.9 0.14 3E-06 38.9 7.2 45 48-95 4-49 (186)
387 PRK09165 replicative DNA helic 94.9 0.22 4.8E-06 43.9 9.3 141 70-214 217-391 (497)
388 cd01128 rho_factor Transcripti 94.9 0.24 5.3E-06 39.6 8.6 30 67-97 13-42 (249)
389 PRK07133 DNA polymerase III su 94.9 0.099 2.1E-06 47.9 7.1 40 173-213 116-155 (725)
390 PF00437 T2SE: Type II/IV secr 94.8 0.06 1.3E-06 43.4 5.1 44 67-113 124-167 (270)
391 TIGR01425 SRP54_euk signal rec 94.7 0.86 1.9E-05 39.4 12.1 85 72-162 102-194 (429)
392 TIGR02868 CydC thiol reductant 94.7 0.14 3.1E-06 45.4 7.7 40 174-213 487-526 (529)
393 PRK13764 ATPase; Provisional 94.7 0.082 1.8E-06 47.4 6.1 28 69-97 256-283 (602)
394 COG0210 UvrD Superfamily I DNA 94.7 0.098 2.1E-06 47.7 6.8 70 55-126 2-72 (655)
395 PHA02535 P terminase ATPase su 94.7 0.59 1.3E-05 41.8 11.2 86 40-127 123-208 (581)
396 PF01695 IstB_IS21: IstB-like 94.7 0.074 1.6E-06 40.2 5.0 45 68-116 45-89 (178)
397 PRK07399 DNA polymerase III su 94.7 0.86 1.9E-05 37.7 11.7 51 160-213 110-160 (314)
398 COG1074 RecB ATP-dependent exo 94.7 0.067 1.4E-06 51.8 5.8 58 69-126 15-74 (1139)
399 PRK14970 DNA polymerase III su 94.6 0.38 8.2E-06 40.6 9.8 18 71-88 40-57 (367)
400 COG0630 VirB11 Type IV secreto 94.5 0.19 4.1E-06 41.6 7.5 59 32-96 109-168 (312)
401 PRK06067 flagellar accessory p 94.5 0.9 2E-05 35.7 11.2 51 70-124 25-75 (234)
402 COG1485 Predicted ATPase [Gene 94.5 0.69 1.5E-05 38.6 10.5 107 71-218 66-173 (367)
403 KOG0739 AAA+-type ATPase [Post 94.5 0.78 1.7E-05 37.7 10.6 49 65-120 156-209 (439)
404 TIGR02237 recomb_radB DNA repa 94.5 0.66 1.4E-05 35.7 10.1 39 69-110 11-49 (209)
405 PRK05595 replicative DNA helic 94.5 0.24 5.3E-06 43.0 8.4 150 56-214 185-359 (444)
406 TIGR03689 pup_AAA proteasome A 94.5 0.37 8.1E-06 42.6 9.5 17 70-86 216-232 (512)
407 PF14516 AAA_35: AAA-like doma 94.5 0.03 6.4E-07 46.7 2.7 47 58-107 18-65 (331)
408 TIGR02784 addA_alphas double-s 94.4 0.12 2.5E-06 50.3 6.9 58 69-126 9-66 (1141)
409 PRK10436 hypothetical protein; 94.4 0.14 3.1E-06 44.6 6.8 45 48-96 197-243 (462)
410 PF02534 T4SS-DNA_transf: Type 94.4 0.071 1.5E-06 46.5 5.0 50 71-125 45-94 (469)
411 PRK11034 clpA ATP-dependent Cl 94.4 0.27 5.8E-06 45.6 8.8 40 177-216 280-323 (758)
412 cd01126 TraG_VirD4 The TraG/Tr 94.4 0.034 7.3E-07 47.3 2.9 47 72-123 1-47 (384)
413 KOG0733 Nuclear AAA ATPase (VC 94.4 0.29 6.3E-06 43.8 8.5 46 174-219 603-658 (802)
414 PF01443 Viral_helicase1: Vira 94.4 0.053 1.1E-06 42.4 3.8 14 73-86 1-14 (234)
415 PF06733 DEAD_2: DEAD_2; Inte 94.4 0.029 6.3E-07 42.1 2.2 46 144-190 112-160 (174)
416 COG1484 DnaC DNA replication p 94.4 0.12 2.6E-06 41.5 5.8 50 69-122 104-153 (254)
417 PRK08058 DNA polymerase III su 94.4 0.31 6.7E-06 40.6 8.5 40 173-213 108-147 (329)
418 TIGR03878 thermo_KaiC_2 KaiC d 94.3 0.35 7.6E-06 38.8 8.5 38 69-109 35-72 (259)
419 TIGR02639 ClpA ATP-dependent C 94.3 0.5 1.1E-05 43.8 10.5 17 71-87 204-220 (731)
420 PRK04537 ATP-dependent RNA hel 94.3 0.37 8E-06 43.3 9.4 75 100-184 256-334 (572)
421 PRK13341 recombination factor 94.3 0.13 2.9E-06 47.3 6.6 18 71-88 53-70 (725)
422 cd03115 SRP The signal recogni 94.3 1.4 3.1E-05 32.7 11.3 17 73-89 3-19 (173)
423 KOG1806 DEAD box containing he 94.2 0.1 2.2E-06 48.9 5.5 72 52-124 735-806 (1320)
424 TIGR03819 heli_sec_ATPase heli 94.2 0.24 5.3E-06 41.5 7.5 64 44-113 153-217 (340)
425 PF03266 NTPase_1: NTPase; In 94.2 0.065 1.4E-06 40.2 3.7 28 174-201 94-123 (168)
426 KOG0732 AAA+-type ATPase conta 94.2 0.15 3.2E-06 48.3 6.6 146 31-219 260-417 (1080)
427 KOG0333 U5 snRNP-like RNA heli 94.0 0.23 5E-06 43.5 7.0 81 100-190 516-608 (673)
428 TIGR01243 CDC48 AAA family ATP 94.0 0.18 3.9E-06 46.7 6.9 17 70-86 487-503 (733)
429 TIGR00959 ffh signal recogniti 93.9 0.95 2E-05 39.2 10.6 87 72-162 101-194 (428)
430 PRK09087 hypothetical protein; 93.9 0.18 4E-06 39.6 5.9 38 177-216 89-126 (226)
431 cd03239 ABC_SMC_head The struc 93.8 0.13 2.9E-06 38.8 4.9 40 174-213 115-155 (178)
432 KOG0744 AAA+-type ATPase [Post 93.8 0.65 1.4E-05 38.5 8.8 65 71-136 178-256 (423)
433 PRK13897 type IV secretion sys 93.7 0.076 1.6E-06 47.8 3.9 49 71-124 159-207 (606)
434 cd01129 PulE-GspE PulE/GspE Th 93.7 0.22 4.8E-06 40.1 6.3 46 47-96 58-105 (264)
435 TIGR02788 VirB11 P-type DNA tr 93.7 0.18 3.8E-06 41.7 5.7 29 66-95 140-168 (308)
436 COG2812 DnaX DNA polymerase II 93.6 0.2 4.3E-06 44.1 6.2 36 173-209 117-152 (515)
437 PRK10689 transcription-repair 93.6 0.36 7.9E-06 46.8 8.3 78 101-186 809-890 (1147)
438 COG0305 DnaB Replicative DNA h 93.5 0.46 9.9E-06 41.0 8.0 138 72-214 198-354 (435)
439 PRK12608 transcription termina 93.5 0.63 1.4E-05 39.4 8.7 40 58-98 118-160 (380)
440 PRK13695 putative NTPase; Prov 93.5 1.8 4E-05 32.2 10.6 24 72-96 2-25 (174)
441 TIGR00580 mfd transcription-re 93.5 0.36 7.7E-06 45.8 8.0 79 101-187 660-742 (926)
442 PF14532 Sigma54_activ_2: Sigm 93.5 0.44 9.6E-06 34.1 7.0 20 67-86 18-37 (138)
443 KOG0344 ATP-dependent RNA heli 93.5 0.62 1.3E-05 41.2 8.8 99 77-185 364-466 (593)
444 PF12775 AAA_7: P-loop contain 93.5 0.092 2E-06 42.5 3.6 28 67-95 30-57 (272)
445 TIGR02640 gas_vesic_GvpN gas v 93.4 0.094 2E-06 42.2 3.6 26 63-88 14-39 (262)
446 TIGR02533 type_II_gspE general 93.4 0.23 4.9E-06 43.7 6.1 46 47-96 220-267 (486)
447 COG0513 SrmB Superfamily II DN 93.3 0.56 1.2E-05 41.6 8.7 71 101-181 273-347 (513)
448 PRK05564 DNA polymerase III su 93.3 0.91 2E-05 37.5 9.5 40 173-213 91-130 (313)
449 PHA00350 putative assembly pro 93.3 1 2.3E-05 38.5 9.8 17 73-89 4-20 (399)
450 PRK04837 ATP-dependent RNA hel 93.3 0.55 1.2E-05 40.4 8.4 73 101-183 255-331 (423)
451 PRK11192 ATP-dependent RNA hel 93.3 0.57 1.2E-05 40.5 8.5 79 93-181 237-319 (434)
452 TIGR00416 sms DNA repair prote 93.2 1.4 3.1E-05 38.5 10.8 91 70-189 94-184 (454)
453 PHA00729 NTP-binding motif con 93.2 0.2 4.3E-06 39.4 5.0 16 72-87 19-34 (226)
454 KOG1016 Predicted DNA helicase 93.2 1.1 2.4E-05 41.3 10.1 94 69-164 281-387 (1387)
455 PRK10590 ATP-dependent RNA hel 93.2 0.61 1.3E-05 40.7 8.6 74 100-183 244-321 (456)
456 PHA02542 41 41 helicase; Provi 93.2 0.43 9.2E-06 41.9 7.5 40 175-214 301-352 (473)
457 PF04665 Pox_A32: Poxvirus A32 93.1 0.17 3.6E-06 40.2 4.5 35 72-109 15-49 (241)
458 PF00931 NB-ARC: NB-ARC domain 93.1 0.76 1.6E-05 37.0 8.5 23 71-94 20-42 (287)
459 TIGR00763 lon ATP-dependent pr 93.0 0.48 1E-05 44.2 8.1 18 70-87 347-364 (775)
460 PRK05986 cob(I)alamin adenolsy 93.0 1.4 3.1E-05 33.6 9.3 41 173-213 113-155 (191)
461 TIGR02655 circ_KaiC circadian 93.0 1.9 4E-05 38.0 11.3 52 70-125 263-314 (484)
462 cd01125 repA Hexameric Replica 92.9 1.7 3.8E-05 34.2 10.1 54 72-126 3-65 (239)
463 PRK06749 replicative DNA helic 92.9 0.97 2.1E-05 39.1 9.2 49 69-121 185-233 (428)
464 PF13479 AAA_24: AAA domain 92.9 0.19 4E-06 39.1 4.5 35 153-187 46-80 (213)
465 TIGR03880 KaiC_arch_3 KaiC dom 92.9 1.1 2.5E-05 34.8 9.0 51 70-124 16-66 (224)
466 COG3972 Superfamily I DNA and 92.8 0.15 3.3E-06 44.3 4.1 155 42-201 150-320 (660)
467 PRK05917 DNA polymerase III su 92.7 3 6.4E-05 34.2 11.3 41 174-215 94-134 (290)
468 PRK13850 type IV secretion sys 92.7 0.14 3E-06 46.7 4.0 48 71-123 140-187 (670)
469 COG1219 ClpX ATP-dependent pro 92.7 0.084 1.8E-06 43.4 2.3 18 71-88 98-115 (408)
470 PRK07773 replicative DNA helic 92.7 0.44 9.5E-06 45.2 7.3 138 71-214 218-375 (886)
471 COG0466 Lon ATP-dependent Lon 92.6 1.9 4E-05 39.5 10.7 63 135-203 382-445 (782)
472 TIGR02858 spore_III_AA stage I 92.6 3.5 7.5E-05 33.4 11.5 24 71-95 112-135 (270)
473 PF12846 AAA_10: AAA-like doma 92.6 0.27 5.8E-06 39.8 5.2 41 175-215 220-262 (304)
474 TIGR02538 type_IV_pilB type IV 92.5 0.35 7.5E-06 43.4 6.2 46 47-96 294-341 (564)
475 TIGR03346 chaperone_ClpB ATP-d 92.5 1.4 3E-05 41.7 10.4 17 71-87 195-211 (852)
476 TIGR03345 VI_ClpV1 type VI sec 92.5 0.94 2E-05 42.8 9.2 17 71-87 209-225 (852)
477 cd01131 PilT Pilus retraction 92.5 0.25 5.4E-06 38.0 4.6 36 72-109 3-38 (198)
478 TIGR02773 addB_Gpos ATP-depend 92.3 0.93 2E-05 44.3 9.3 41 74-114 5-45 (1158)
479 TIGR01420 pilT_fam pilus retra 92.3 0.25 5.3E-06 41.5 4.8 42 69-112 121-162 (343)
480 cd03289 ABCC_CFTR2 The CFTR su 92.3 0.56 1.2E-05 38.1 6.7 40 174-213 155-194 (275)
481 CHL00176 ftsH cell division pr 92.3 0.8 1.7E-05 41.7 8.3 18 70-87 216-233 (638)
482 PF01935 DUF87: Domain of unkn 92.3 0.22 4.8E-06 39.0 4.3 43 70-114 23-65 (229)
483 PTZ00110 helicase; Provisional 92.3 1.3 2.8E-05 39.6 9.6 74 100-183 376-453 (545)
484 COG0552 FtsY Signal recognitio 92.3 2.3 5E-05 35.4 10.1 107 73-205 142-252 (340)
485 KOG2543 Origin recognition com 92.3 3.1 6.6E-05 35.4 10.9 45 174-218 114-160 (438)
486 PF01580 FtsK_SpoIIIE: FtsK/Sp 92.2 0.29 6.3E-06 37.6 4.8 28 69-96 37-64 (205)
487 PRK10416 signal recognition pa 92.2 6 0.00013 32.8 13.2 18 71-88 115-132 (318)
488 TIGR03743 SXT_TraD conjugative 92.2 0.59 1.3E-05 42.5 7.3 55 70-127 176-232 (634)
489 PRK10867 signal recognition pa 92.1 3 6.4E-05 36.2 11.2 18 73-90 103-120 (433)
490 COG1132 MdlB ABC-type multidru 92.1 0.43 9.3E-06 42.8 6.3 39 174-212 482-520 (567)
491 PF10412 TrwB_AAD_bind: Type I 92.1 0.2 4.4E-06 42.7 4.0 43 68-113 13-55 (386)
492 PLN03232 ABC transporter C fam 92.0 0.3 6.4E-06 48.9 5.6 39 174-212 1388-1426(1495)
493 TIGR00609 recB exodeoxyribonuc 91.9 0.41 8.9E-06 46.4 6.3 54 71-124 10-65 (1087)
494 TIGR00708 cobA cob(I)alamin ad 91.9 3.6 7.7E-05 31.0 10.0 44 173-216 95-140 (173)
495 PHA00012 I assembly protein 91.8 2.1 4.5E-05 35.7 9.3 25 73-97 4-28 (361)
496 COG5008 PilU Tfp pilus assembl 91.8 0.31 6.7E-06 39.3 4.4 17 72-88 129-145 (375)
497 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.7 1.7 3.7E-05 31.4 8.1 38 174-213 87-124 (144)
498 cd01127 TrwB Bacterial conjuga 91.6 0.23 5E-06 42.7 3.9 28 67-95 39-66 (410)
499 PRK10865 protein disaggregatio 91.6 1.7 3.6E-05 41.2 9.7 17 71-87 200-216 (857)
500 TIGR03754 conj_TOL_TraD conjug 91.5 0.89 1.9E-05 41.3 7.5 55 70-127 180-236 (643)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-41 Score=272.56 Aligned_cols=190 Identities=32% Similarity=0.513 Sum_probs=182.9
Q ss_pred CCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEc
Q 027749 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (219)
.+...+|.++++.+.+.+++++.||..|+++|++++|.++.|+++|..|.||||||.+|++|+++.+...+..++++|++
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLt 136 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLT 136 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEec
Confidence 34557899999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred CCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHH-cCCCCCCCccEEEeccchhh
Q 027749 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK-RKTLRTRAIKLLVLDESDEM 187 (219)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~-~~~~~~~~l~~lVvDE~h~l 187 (219)
||++||.|+.+.++.++...++++..+.||.+...+...+.+.++|+|+||++|.+.+. .+.+.++.++++|+||||++
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrl 216 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRL 216 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999998 57889999999999999999
Q ss_pred hccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 188 LSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+++.|...+.+|++.+|.+.|.++||||+|.
T Consensus 217 Ld~dF~~~ld~ILk~ip~erqt~LfsATMt~ 247 (476)
T KOG0330|consen 217 LDMDFEEELDYILKVIPRERQTFLFSATMTK 247 (476)
T ss_pred hhhhhHHHHHHHHHhcCccceEEEEEeecch
Confidence 9999999999999999999999999999985
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-41 Score=285.45 Aligned_cols=185 Identities=32% Similarity=0.564 Sum_probs=177.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhcc------CCCceeEEEE
Q 027749 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSREVQALIL 107 (219)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~------~~~~~~~lil 107 (219)
.|.++++++....+++..||..|+|+|.+.||.++.|+|++..+.||+|||++|++|++.++.. ...+|.+||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 6888999999999999999999999999999999999999999999999999999999998875 4457999999
Q ss_pred cCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhh
Q 027749 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (219)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l 187 (219)
+|||+||.|+...+.++.....++..|++||.+...+.+.+.++.+|+|+||++|.++++.+.++++++.|+|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHHhC-CCCCeEEEEeecccC
Q 027749 188 LSRGFKDQIYDVYRYL-PPDLQVCCPGSCFLF 218 (219)
Q Consensus 188 ~~~~~~~~~~~i~~~~-~~~~q~i~~SATl~~ 218 (219)
++++|+.++++|++.+ ++..|++++|||+|.
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~ 283 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPK 283 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccH
Confidence 9999999999999999 556689999999985
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.9e-40 Score=288.96 Aligned_cols=194 Identities=29% Similarity=0.446 Sum_probs=181.2
Q ss_pred ccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-----C
Q 027749 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----S 99 (219)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-----~ 99 (219)
....|+++.+|+++++++.++++|.+.||..|+|+|.++||.+++|+|+++++|||+|||++|++|++..+... .
T Consensus 122 g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~ 201 (545)
T PTZ00110 122 GENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYG 201 (545)
T ss_pred CCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCC
Confidence 34558899999999999999999999999999999999999999999999999999999999999998876432 3
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEE
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~l 179 (219)
.++.+|||+||++||.|+.+.+.++....++++.+++|+.+...+...+..+++|+|+||++|.+++.++..+++++++|
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 46889999999999999999999999888999999999999888888888999999999999999999888889999999
Q ss_pred EeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 180 VLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 180 VvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
|+||||+|++++|...+..++..++++.|++++|||+|.
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~ 320 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPK 320 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCH
Confidence 999999999999999999999999999999999999985
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-40 Score=283.44 Aligned_cols=186 Identities=39% Similarity=0.628 Sum_probs=176.1
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhcc--CCCceeEEEEcCC
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT--SSREVQALILSPT 110 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~--~~~~~~~lil~P~ 110 (219)
.+|+++++++.+++++.+.||..|+|+|..++|.++.|+|+++.++||+|||.+|++|+++.+.. ......+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999773 3222229999999
Q ss_pred HHHHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 111 RELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
++||.|+++.+.++.... ++++.+++||.+...+...+..+++|+|+||+++++++.++.++++.++++|+||||+|++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999988 7999999999999999988988999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 190 RGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+||.+.+..|++.+|.+.|+++||||+|.
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~ 217 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPD 217 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 99999999999999999999999999985
No 5
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.8e-39 Score=279.71 Aligned_cols=194 Identities=30% Similarity=0.529 Sum_probs=178.6
Q ss_pred eccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhcc------
Q 027749 24 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------ 97 (219)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~------ 97 (219)
.....|+++.+|+++++++.++++|.+.||..|+|+|.++||.+++|+|+++++|||+|||++|++|++..+..
T Consensus 112 ~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~ 191 (518)
T PLN00206 112 KGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHP 191 (518)
T ss_pred cCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccc
Confidence 33455789999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred -CCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 98 -SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 98 -~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
...++++||++||++||.|+.+.++.+.+..++.+..++|+.....+...+..+++|+|+||++|.+++..+.+.++++
T Consensus 192 ~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 192 SEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchhe
Confidence 2246899999999999999999999998888899999999999888888888899999999999999999888899999
Q ss_pred cEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 177 KLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 177 ~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
++||+||||+|++++|...+..++..++ +.|++++|||+|.
T Consensus 272 ~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~ 312 (518)
T PLN00206 272 SVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSP 312 (518)
T ss_pred eEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCH
Confidence 9999999999999999999999999885 6899999999985
No 6
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-39 Score=252.56 Aligned_cols=209 Identities=65% Similarity=1.010 Sum_probs=199.2
Q ss_pred CCCCCCCCCcceeeccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHH
Q 027749 11 GGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALT 90 (219)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~ 90 (219)
........+..+++.+...+.+.+|+++++..++++..-..||++|..+|+++++.+++|+|++.++..|+|||.+|.+.
T Consensus 5 ~~~~~~~~~~~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~ 84 (400)
T KOG0328|consen 5 ELFTMEDMDTVEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSIS 84 (400)
T ss_pred hhcccccccceeEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEee
Confidence 34556677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC
Q 027749 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT 170 (219)
Q Consensus 91 ~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~ 170 (219)
+++.+.-+....+++|+.||++|+.|+.+.+..++...++.+..+.||++..++++++..|+.++.+||++.+++++.+.
T Consensus 85 vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~ 164 (400)
T KOG0328|consen 85 VLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS 164 (400)
T ss_pred eeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc
Confidence 99988877777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccCC
Q 027749 171 LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 171 ~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~~ 219 (219)
+..+.++++|+||+|.|++.+|..++..+.+.+|++.|++++|||+|.|
T Consensus 165 L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~e 213 (400)
T KOG0328|consen 165 LRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHE 213 (400)
T ss_pred ccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHH
Confidence 9999999999999999999999999999999999999999999999964
No 7
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.1e-40 Score=270.74 Aligned_cols=186 Identities=31% Similarity=0.513 Sum_probs=176.9
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCc---eeEEEEcC
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILSP 109 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~---~~~lil~P 109 (219)
.+|.+++|+.++++++...||..|+|+|..+||..+-|++++-||.||+|||.+|.+|++.++...+.+ -++||++|
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 489999999999999999999999999999999999999999999999999999999999999776543 57999999
Q ss_pred CHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcC-CCCCCCccEEEeccchhhh
Q 027749 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~-~~~~~~l~~lVvDE~h~l~ 188 (219)
|++|+.|+++..+++..+.++.+++++||.+...+-..++..++|+|+||++|.+.+.+. .++++++..+|+||||+|+
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998874 5789999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 189 SRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+.+|.+.|..|++.+|+++|.++||||++.
T Consensus 341 eegFademnEii~lcpk~RQTmLFSATMte 370 (691)
T KOG0338|consen 341 EEGFADEMNEIIRLCPKNRQTMLFSATMTE 370 (691)
T ss_pred HHHHHHHHHHHHHhccccccceeehhhhHH
Confidence 999999999999999999999999999875
No 8
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.1e-38 Score=270.71 Aligned_cols=188 Identities=29% Similarity=0.456 Sum_probs=173.5
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-------CCcee
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQ 103 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-------~~~~~ 103 (219)
...+|+++++++.++++|.++||..|+|+|.++||.+++|+|++++||||+|||++|++|+++.+... ..+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 34689999999999999999999999999999999999999999999999999999999999877532 23578
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEecc
Q 027749 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (219)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE 183 (219)
+||++||++||.|+++.+..+....++++..++|+.+...+...+..+++|+|+||++|.+++.+..+.++++++||+||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999999998889999999999998888888888999999999999999998888999999999999
Q ss_pred chhhhccccHHHHHHHHHhCCC--CCeEEEEeecccC
Q 027749 184 SDEMLSRGFKDQIYDVYRYLPP--DLQVCCPGSCFLF 218 (219)
Q Consensus 184 ~h~l~~~~~~~~~~~i~~~~~~--~~q~i~~SATl~~ 218 (219)
||++++++|...+..+++.++. ..|.+++|||++.
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~ 202 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY 202 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH
Confidence 9999999999999999999975 5678999999974
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.6e-38 Score=272.23 Aligned_cols=185 Identities=38% Similarity=0.626 Sum_probs=173.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC------CceeEEEE
Q 027749 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS------REVQALIL 107 (219)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~------~~~~~lil 107 (219)
+|+++++++++.++|.+.||..|+|+|.++||.+++|+|+++++|||+|||++|++|+++.+.... ..+++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 699999999999999999999999999999999999999999999999999999999999875432 23589999
Q ss_pred cCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhh
Q 027749 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (219)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l 187 (219)
+||++||.|+.+.+..+....++.+..++|+.+...+...+..+++|+|+||++|++++....+.++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999998888888889999999999999999888888999999999999999
Q ss_pred hccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 188 LSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
++++|...+..++..++...|+++||||++.
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~ 192 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSD 192 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcH
Confidence 9999999999999999999999999999985
No 10
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.8e-38 Score=272.63 Aligned_cols=186 Identities=39% Similarity=0.629 Sum_probs=175.2
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHH
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 112 (219)
.+|+++++++.+.+++.+.||..|+|+|.++||.+++|+|+++++|||+|||++|++|+++.+......++++|++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999999876666778999999999
Q ss_pred HHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc
Q 027749 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (219)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~ 191 (219)
|+.|+.+.++.+.... ++++..++|+.+...+...+..+++|+|+||++|.+++.++.+.++++++||+||||+|++++
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 9999999999887654 688889999999988888888999999999999999999888889999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 192 FKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 192 ~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
|...+..+++.+++..|+++||||+|+
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~ 190 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPE 190 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcH
Confidence 999999999999999999999999985
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.6e-38 Score=276.95 Aligned_cols=188 Identities=34% Similarity=0.567 Sum_probs=176.0
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~ 110 (219)
...+|.++++++.++++|.++||..|+|+|.++||.++.+++++++||||+|||++|.+|+++.+......+++||++||
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PT 83 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPT 83 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCc
Confidence 34579999999999999999999999999999999999999999999999999999999999988766667899999999
Q ss_pred HHHHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 111 RELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
++|+.|+.+.+..+.... ++.+..++|+.+...+...+..+++|+|+||+++.+++....+.++++++||+||||.|++
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~ 163 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR 163 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhh
Confidence 999999999999887654 7889999999998888888888999999999999999998888999999999999999999
Q ss_pred cccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 190 RGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
++|...+..+++.+|...|+++||||+|.
T Consensus 164 ~gf~~di~~Il~~lp~~~q~llfSAT~p~ 192 (629)
T PRK11634 164 MGFIEDVETIMAQIPEGHQTALFSATMPE 192 (629)
T ss_pred cccHHHHHHHHHhCCCCCeEEEEEccCCh
Confidence 99999999999999999999999999985
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.4e-37 Score=270.64 Aligned_cols=186 Identities=31% Similarity=0.463 Sum_probs=171.2
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-------CCceeEE
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQAL 105 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-------~~~~~~l 105 (219)
.+|+++++++.++++|.+.||..|+|+|.++||.+++|+|+++++|||+|||++|++|+++.+... ...+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 469999999999999999999999999999999999999999999999999999999999987532 1247899
Q ss_pred EEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcC-CCCCCCccEEEeccc
Q 027749 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDES 184 (219)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~-~~~~~~l~~lVvDE~ 184 (219)
|++||++|+.|+++.+.++....++++..++|+.+...+...+..+++|+|+||++|++++.+. .+.++.+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999998899999999999988887778888999999999999988765 467889999999999
Q ss_pred hhhhccccHHHHHHHHHhCCC--CCeEEEEeecccC
Q 027749 185 DEMLSRGFKDQIYDVYRYLPP--DLQVCCPGSCFLF 218 (219)
Q Consensus 185 h~l~~~~~~~~~~~i~~~~~~--~~q~i~~SATl~~ 218 (219)
|+|++++|...+..+++.++. ..|+++||||++.
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~ 204 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSH 204 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccH
Confidence 999999999999999999987 7899999999975
No 13
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.7e-36 Score=259.79 Aligned_cols=185 Identities=30% Similarity=0.449 Sum_probs=172.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC----CCceeEEEEcC
Q 027749 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALILSP 109 (219)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~----~~~~~~lil~P 109 (219)
+|+++++++.++++|.+.||..|+++|.++|+.+++|+|+++++|||+|||++|++|+++.+... ...+++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999877532 23468999999
Q ss_pred CHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
|++|+.|+.+.+..+....++++..+.|+.....+...+..+++|+|+||++|++++.++.+.++++++||+||||+|++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999999989999999999998888777888899999999999999998888899999999999999999
Q ss_pred cccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 190 RGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
++|...+..+...++...|+++||||++.
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~ 190 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEG 190 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCH
Confidence 99999999999999989999999999863
No 14
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-38 Score=260.63 Aligned_cols=204 Identities=28% Similarity=0.433 Sum_probs=185.4
Q ss_pred CCCCcceeecc--CCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHh
Q 027749 16 MDDDKMVFETT--EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ 93 (219)
Q Consensus 16 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~ 93 (219)
...++...+.+ ..|.++..|.+..+.+.+..++...++..|+|+|+.++|.+..|++.++||+||+|||.+|++|++.
T Consensus 55 d~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~ 134 (482)
T KOG0335|consen 55 DKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIIS 134 (482)
T ss_pred CCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHH
Confidence 33444444444 4478888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCC----------CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHH
Q 027749 94 TVDTSS----------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC 163 (219)
Q Consensus 94 ~~~~~~----------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~ 163 (219)
.+.... ..|.++|++||++||.|++++++++.-..+++.+..+|+.+...+...+.++|+|+|+||++|.
T Consensus 135 ~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~ 214 (482)
T KOG0335|consen 135 YLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLK 214 (482)
T ss_pred HHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhh
Confidence 886542 2589999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCccEEEeccchhhhc-cccHHHHHHHHHhCCC----CCeEEEEeecccCC
Q 027749 164 DMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPP----DLQVCCPGSCFLFD 219 (219)
Q Consensus 164 ~~l~~~~~~~~~l~~lVvDE~h~l~~-~~~~~~~~~i~~~~~~----~~q~i~~SATl~~~ 219 (219)
++++.+.+.+++++++|+||||+|++ ++|..+++.|+.+... ..|.++||||+|.+
T Consensus 215 d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~ 275 (482)
T KOG0335|consen 215 DLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKE 275 (482)
T ss_pred hhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChh
Confidence 99999999999999999999999999 8999999999999743 78999999999964
No 15
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-37 Score=255.15 Aligned_cols=195 Identities=32% Similarity=0.480 Sum_probs=185.7
Q ss_pred eccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-----
Q 027749 24 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----- 98 (219)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~----- 98 (219)
...+.++++.+|+.++++..+..+.++..|.+|+|+|.+++|..++|++++-.|-||+|||.+|+.|++..+..+
T Consensus 214 ~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~ 293 (731)
T KOG0339|consen 214 SGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKP 293 (731)
T ss_pred ccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcC
Confidence 344568899999999999999999999999999999999999999999999999999999999999999888653
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccE
Q 027749 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (219)
Q Consensus 99 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~ 178 (219)
..+|..+|++||++|+.|++.+++++++..++++++++||.+..++...|..++.||||||++|.++++-+..++.++.|
T Consensus 294 g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 294 GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 179 LVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 179 lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
||+||+|+|+++||..+++.|..+..++.|.|+||||++.
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~ 413 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKK 413 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchH
Confidence 9999999999999999999999999999999999999974
No 16
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=6.1e-37 Score=252.66 Aligned_cols=188 Identities=29% Similarity=0.467 Sum_probs=174.9
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC----CCceeEEEE
Q 027749 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALIL 107 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~----~~~~~~lil 107 (219)
...|++.++++..++++.++||...|++|+..++.++.|+|+++.|-||+|||++|++|+++.+... +.+..++|+
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 4567888999999999999999999999999999999999999999999999999999999988643 345679999
Q ss_pred cCCHHHHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC-CCCCCccEEEeccch
Q 027749 108 SPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLVLDESD 185 (219)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~-~~~~~l~~lVvDE~h 185 (219)
+||++||.|++.+++++.... ++.+..++||.+...+.+++.++|+|+|+||++|++.+.+.. +.+++++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999999888 899999999999999999999999999999999999998754 556788999999999
Q ss_pred hhhccccHHHHHHHHHhCCCCCeEEEEeecccCC
Q 027749 186 EMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 186 ~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~~ 219 (219)
++++.||.+.++.|++.+|+..|.++||||.|++
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~k 274 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSK 274 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHH
Confidence 9999999999999999999999999999999864
No 17
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=9.4e-36 Score=230.70 Aligned_cols=184 Identities=45% Similarity=0.741 Sum_probs=170.8
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC--CCceeEEEEcCCHH
Q 027749 35 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRE 112 (219)
Q Consensus 35 ~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~--~~~~~~lil~P~~~ 112 (219)
|+++++++.+.+.|.+.|+..|+++|.++++.+.+|+++++++|||+|||++|+++++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 7889999999999999999999999999999999999999999999999999999999988876 56789999999999
Q ss_pred HHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcccc
Q 027749 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (219)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~ 192 (219)
|+.|+...++.+....++.+..+.|+.+.......+..+++|+|+||+++...+.+....+++++++|+||+|.+.+.++
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999988778888889998887777666767899999999999999988878889999999999999998889
Q ss_pred HHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 193 KDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 193 ~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
...+..+++.+++++|++++|||+++
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCH
Confidence 99999999999999999999999985
No 18
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.3e-36 Score=253.98 Aligned_cols=188 Identities=57% Similarity=0.950 Sum_probs=174.4
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~ 110 (219)
...+|+++++++.+.++|.++|+..|+|+|.++|+.+.+|+++++++|||+|||++|++|++..+.....+.++||++|+
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 46789999999999999999999999999999999999999999999999999999999999988765567789999999
Q ss_pred HHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
++|+.|+.+.+..+....+..+..+.|+.....+...+..+++|+|+||+++.+++..+...++++++||+||+|++.++
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~ 185 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSR 185 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhc
Confidence 99999999999999887788888888988887777788888999999999999999888888999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 191 GFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 191 ~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+|...+..+++.++++.|++++|||+|.
T Consensus 186 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 213 (401)
T PTZ00424 186 GFKGQIYDVFKKLPPDVQVALFSATMPN 213 (401)
T ss_pred chHHHHHHHHhhCCCCcEEEEEEecCCH
Confidence 9999999999999999999999999985
No 19
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=9.9e-37 Score=253.13 Aligned_cols=214 Identities=26% Similarity=0.385 Sum_probs=195.6
Q ss_pred hhhhhcCCCCCCCCCcceeeccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchh
Q 027749 5 TAMRRRGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKT 84 (219)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT 84 (219)
..|+.+.-..-..+=.+..+....++++.+|++.+++..+++.+.+.||..|+|+|..++|..++.+|+|..+.||||||
T Consensus 217 ~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGkt 296 (673)
T KOG0333|consen 217 AEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKT 296 (673)
T ss_pred HhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCcc
Confidence 34555555555555666777788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHhhhcc---------CCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEE
Q 027749 85 SMIALTVCQTVDT---------SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVV 155 (219)
Q Consensus 85 ~~~~~~~~~~~~~---------~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~ 155 (219)
.+|++|++..+.. .-.+|+++|++||++|++|+.++..++++..+++++.++||.+.+++...+..+|.|+
T Consensus 297 aaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiv 376 (673)
T KOG0333|consen 297 AAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIV 376 (673)
T ss_pred ccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceee
Confidence 9999999877643 3357999999999999999999999999999999999999999999988999999999
Q ss_pred EeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCC---C----------------------CeEE
Q 027749 156 SGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP---D----------------------LQVC 210 (219)
Q Consensus 156 v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~---~----------------------~q~i 210 (219)
|+||++|.+.+.++.+.++++.++|+||||+|++++|+.++..++.+||. . .|.+
T Consensus 377 iatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~ 456 (673)
T KOG0333|consen 377 IATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTV 456 (673)
T ss_pred ecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEE
Confidence 99999999999999999999999999999999999999999999999964 1 6999
Q ss_pred EEeecccC
Q 027749 211 CPGSCFLF 218 (219)
Q Consensus 211 ~~SATl~~ 218 (219)
.||||+|+
T Consensus 457 mftatm~p 464 (673)
T KOG0333|consen 457 MFTATMPP 464 (673)
T ss_pred EEecCCCh
Confidence 99999986
No 20
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-37 Score=255.06 Aligned_cols=189 Identities=28% Similarity=0.488 Sum_probs=169.9
Q ss_pred CCccCccccCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhcc------CCCc
Q 027749 29 VEAITSFDAMGIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSRE 101 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~------~~~~ 101 (219)
+=....|.++++++.+...|. .+++..||.+|+++||.+++|+|++|.++||+|||++|++|+++.+.. ...+
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 445578999999999999998 679999999999999999999999999999999999999999998854 3457
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc-CCCCCCCccEE
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLL 179 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~-~~~~~~~l~~l 179 (219)
+.++|++||++||.|+++.+.++.+.+ .+..+.++||.....+..++++|++|+|+||++|.+.+.+ ..+.++++++|
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 999999999999999999999998765 4666788999999888899999999999999999998887 55788999999
Q ss_pred EeccchhhhccccHHHHHHHHHhCCC-------------CCeEEEEeeccc
Q 027749 180 VLDESDEMLSRGFKDQIYDVYRYLPP-------------DLQVCCPGSCFL 217 (219)
Q Consensus 180 VvDE~h~l~~~~~~~~~~~i~~~~~~-------------~~q~i~~SATl~ 217 (219)
|+||+|++++.||+..+..|++.+.. ..|.+++|||+.
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLt 342 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLT 342 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhH
Confidence 99999999999999999988887621 267899999986
No 21
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-37 Score=249.35 Aligned_cols=187 Identities=28% Similarity=0.421 Sum_probs=167.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhcc------CCCceeEEE
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSREVQALI 106 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~------~~~~~~~li 106 (219)
.+|+++++++++++++.+.||.+||-+|..+||.++.|+|++..|.||||||.+|++|+++.+.. ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 68999999999999999999999999999999999999999999999999999999999998854 234689999
Q ss_pred EcCCHHHHHHHHHHHHHhccccc--eeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC-CCCCCccEEEecc
Q 027749 107 LSPTRELATQTEKVILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLVLDE 183 (219)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~-~~~~~l~~lVvDE 183 (219)
++||++||.|++..+.++....+ +++.-+.+..+.......+...++|+|+||++++.++..+. ..+..+.++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999988876653 55555555555555556677889999999999999998877 6788999999999
Q ss_pred chhhhccccHHHHHHHHHhCCCCCeEEEEeecccCC
Q 027749 184 SDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 184 ~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~~ 219 (219)
||.+++.||++++..+.+++|+.+|-+++|||++.|
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dD 214 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDD 214 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhH
Confidence 999999999999999999999999999999999754
No 22
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-35 Score=255.77 Aligned_cols=188 Identities=29% Similarity=0.479 Sum_probs=170.7
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC-------Ccee
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-------REVQ 103 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-------~~~~ 103 (219)
....|.++++++.+.++|.++||..|+++|.++|+.+.+|+|+++.+|||+|||++|++|+++.+.... ..++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 346788999999999999999999999999999999999999999999999999999999999876542 2578
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc-CCCeEEEeChHHHHHHHHcCCCCCCCccEEEec
Q 027749 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLD 182 (219)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvD 182 (219)
+||++||++|+.|+.+.+..+.+..++.+..++|+.+...+...+. ..++|+|+||++|+.++..+...++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999999888999999999988777766664 468999999999999988888889999999999
Q ss_pred cchhhhccccHHHHHHHHHhCCC--CCeEEEEeecccC
Q 027749 183 ESDEMLSRGFKDQIYDVYRYLPP--DLQVCCPGSCFLF 218 (219)
Q Consensus 183 E~h~l~~~~~~~~~~~i~~~~~~--~~q~i~~SATl~~ 218 (219)
|+|.+.+++|...+..+++.++. +.|++++|||++.
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~ 282 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTD 282 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCH
Confidence 99999999999999999999864 6799999999874
No 23
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-35 Score=242.97 Aligned_cols=185 Identities=33% Similarity=0.567 Sum_probs=165.8
Q ss_pred CccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC-----CceeEE
Q 027749 33 TSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-----REVQAL 105 (219)
Q Consensus 33 ~~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-----~~~~~l 105 (219)
.+|++++ |++++++++..+||+..||+|..++|.+++++|+++.++||||||++|++|++..+.... ....++
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4677764 669999999999999999999999999999999999999999999999999999884321 124699
Q ss_pred EEcCCHHHHHHHHHHHHHhccc-cceeEEEEECCcccHHHHHHhc-CCCeEEEeChHHHHHHHHcCC--CCCCCccEEEe
Q 027749 106 ILSPTRELATQTEKVILAIGDF-INIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVL 181 (219)
Q Consensus 106 il~P~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~-~~~~I~v~Tp~~l~~~l~~~~--~~~~~l~~lVv 181 (219)
|++||++|+.|+.+.+..+... .++++.+++||.+..++...+. ++++|+||||++|.+++.+.. ++++.+.++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988766 6789999999999988887774 589999999999999998744 55679999999
Q ss_pred ccchhhhccccHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 182 DESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 182 DE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
||||+++++||...++.|++.+|+.+++=+||||-.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~ 199 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQT 199 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhh
Confidence 999999999999999999999999999999999964
No 24
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-36 Score=251.00 Aligned_cols=188 Identities=29% Similarity=0.476 Sum_probs=173.0
Q ss_pred CCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC----CceeE
Q 027749 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQA 104 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~----~~~~~ 104 (219)
...+..|.++|++....+.|++.+|..++.+|+.+||..+.|++++-.+.||||||++|++|+++.+...+ .+..+
T Consensus 65 ~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGa 144 (758)
T KOG0343|consen 65 STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGA 144 (758)
T ss_pred hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCcee
Confidence 34567899999999999999999999999999999999999999999999999999999999999886543 45779
Q ss_pred EEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcC-CCCCCCccEEEecc
Q 027749 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDE 183 (219)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~-~~~~~~l~~lVvDE 183 (219)
||+.||++||.|.++.+.+.++..+++..+++||.+...+..++ ++++|+||||++|+..+... .++..++.++|+||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDE 223 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDE 223 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEecc
Confidence 99999999999999999999999999999999999987776555 46899999999999977654 57889999999999
Q ss_pred chhhhccccHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 184 SDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 184 ~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
||+++++||...+..|++.+|+.+|.++||||-+
T Consensus 224 ADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt 257 (758)
T KOG0343|consen 224 ADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQT 257 (758)
T ss_pred HHHHHHHhHHHHHHHHHHhCChhheeeeeecccc
Confidence 9999999999999999999999999999999964
No 25
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.7e-36 Score=243.16 Aligned_cols=191 Identities=31% Similarity=0.486 Sum_probs=177.9
Q ss_pred CCCCccCcccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhcc------CC
Q 027749 27 EGVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SS 99 (219)
Q Consensus 27 ~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~------~~ 99 (219)
.-|+|.-+|++ +...+.++.++.+.||.+|+|+|.++||.+++|++.+.++.||+|||++|++|-+-.+.. +.
T Consensus 213 pIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr 292 (629)
T KOG0336|consen 213 PIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQR 292 (629)
T ss_pred cCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhcc
Confidence 34888889987 578999999999999999999999999999999999999999999999999998776643 34
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEE
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~l 179 (219)
.+|..|+++||++|+.|+.-++.++. +.+....|++|+.+..+++..++++.+|+++||++|.++...+.+++..+.|+
T Consensus 293 ~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 57899999999999999999998875 44889999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 180 VLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 180 VvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
|+||||+|++++|+.++.+|+-...+++|+++-|||+|+
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~ 410 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPE 410 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccCch
Confidence 999999999999999999999999999999999999996
No 26
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-35 Score=233.70 Aligned_cols=187 Identities=32% Similarity=0.503 Sum_probs=178.7
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~ 110 (219)
....|+++++++++.+.|+.+|+..|+|+|..++|.++.|+|++-+|.||||||.+|.+|+++++...+.+.+++|++||
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPT 84 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPT 84 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecch
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC----CCCCCccEEEeccchh
Q 027749 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT----LRTRAIKLLVLDESDE 186 (219)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~----~~~~~l~~lVvDE~h~ 186 (219)
++|+-|+.+.+..+++..+.+++.++||.+.-.+...+...++++|+||+++.+.+.++. ..+++++++|+||||+
T Consensus 85 rELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADr 164 (442)
T KOG0340|consen 85 RELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADR 164 (442)
T ss_pred HHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhh
Confidence 999999999999999999999999999999999999999999999999999999988763 3468899999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 187 MLSRGFKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 187 l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
+++..|.+.+..+.+.+|+.+|.++||||+.
T Consensus 165 vL~~~f~d~L~~i~e~lP~~RQtLlfSATit 195 (442)
T KOG0340|consen 165 VLAGCFPDILEGIEECLPKPRQTLLFSATIT 195 (442)
T ss_pred hhccchhhHHhhhhccCCCccceEEEEeehh
Confidence 9999999999999999999999999999985
No 27
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-35 Score=260.80 Aligned_cols=198 Identities=32% Similarity=0.538 Sum_probs=183.9
Q ss_pred ceeeccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC--
Q 027749 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-- 98 (219)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-- 98 (219)
+.......+.|+.+|.+.+++..++..++++|+.+|+|+|.+|||++.+|+++|.+|-||+|||++|++|++.....+
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 566777789999999999999999999999999999999999999999999999999999999999999999776543
Q ss_pred ---CCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC---CC
Q 027749 99 ---SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---LR 172 (219)
Q Consensus 99 ---~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~---~~ 172 (219)
..+|-+||++||++|+.|+.+.++++.+..++++++++|+....+++..+++++.|+||||+++.+++-.+. .+
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccc
Confidence 358999999999999999999999999999999999999999999999999999999999999999775433 45
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+.++.++|+||+|+|++.+|..++..|++.+++..|+++||||+|.
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr 558 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPR 558 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhH
Confidence 6677799999999999999999999999999999999999999985
No 28
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=232.69 Aligned_cols=188 Identities=36% Similarity=0.617 Sum_probs=181.4
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~ 110 (219)
.-..|+++.+...++..+.+.||++|.|+|.+++|.++.|+|++..|..|+|||-+|.+|+++.+.......+++|++||
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPt 162 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPT 162 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeec
Confidence 34679999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
++||.|....|.++.+..++.+....||.+...++.++..+..++|+||++++++.+.+...++++.++|+||||.+++.
T Consensus 163 relALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~ 242 (459)
T KOG0326|consen 163 RELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV 242 (459)
T ss_pred chhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 191 GFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 191 ~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
.|...+..++..+|++.|++++|||+|.
T Consensus 243 ~F~~~~e~li~~lP~~rQillySATFP~ 270 (459)
T KOG0326|consen 243 DFQPIVEKLISFLPKERQILLYSATFPL 270 (459)
T ss_pred hhhhHHHHHHHhCCccceeeEEecccch
Confidence 9999999999999999999999999984
No 29
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=7.8e-36 Score=240.51 Aligned_cols=198 Identities=31% Similarity=0.519 Sum_probs=183.1
Q ss_pred ceeeccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhc----
Q 027749 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD---- 96 (219)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~---- 96 (219)
+..+-...|.|+.+|.++.++..+++.|++.|+..|+|+|.+-+|.+++|++.|-.+-||||||++|.+|++.+..
T Consensus 158 I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~ 237 (610)
T KOG0341|consen 158 ILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEM 237 (610)
T ss_pred EEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHh
Confidence 3455667799999999999999999999999999999999999999999999999999999999999999987663
Q ss_pred ----cCCCceeEEEEcCCHHHHHHHHHHHHHhcccc------ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHH
Q 027749 97 ----TSSREVQALILSPTRELATQTEKVILAIGDFI------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI 166 (219)
Q Consensus 97 ----~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l 166 (219)
....+|..+|+||+++||.|.++.+.++.... .++..+++||.+..++....++|..|+|+||++|.+++
T Consensus 238 ~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL 317 (610)
T KOG0341|consen 238 MLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDML 317 (610)
T ss_pred cCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHH
Confidence 34568999999999999999999998875543 47888899999999999999999999999999999999
Q ss_pred HcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 167 KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 167 ~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
..+.+.+.-++|+++||||+|.++||.++++.|+..+..-+|.++||||.|.
T Consensus 318 ~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~ 369 (610)
T KOG0341|consen 318 AKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPK 369 (610)
T ss_pred HHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccH
Confidence 9999999999999999999999999999999999999999999999999985
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=235.09 Aligned_cols=193 Identities=26% Similarity=0.470 Sum_probs=173.1
Q ss_pred cCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCCchhHHhHHHHHhhhccCC-----
Q 027749 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSS----- 99 (219)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tG~GKT~~~~~~~~~~~~~~~----- 99 (219)
.+....+..|..++++..++++|...||..|+++|...+|.+..| .|++--|.||||||++|-+|+++.+....
T Consensus 174 ~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e 253 (731)
T KOG0347|consen 174 DSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQE 253 (731)
T ss_pred cccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhh
Confidence 344567788999999999999999999999999999999999999 69999999999999999999999664321
Q ss_pred ------C--ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCC
Q 027749 100 ------R--EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL 171 (219)
Q Consensus 100 ------~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~ 171 (219)
. .+.+||++|||+||.|+...+..+....++++..++||.....+.+.++..++|+|+||++|..++.....
T Consensus 254 ~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~ 333 (731)
T KOG0347|consen 254 LSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNT 333 (731)
T ss_pred hhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhh
Confidence 1 24499999999999999999999999999999999999999999899999999999999999999987543
Q ss_pred ---CCCCccEEEeccchhhhccccHHHHHHHHHhCC-----CCCeEEEEeecccC
Q 027749 172 ---RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-----PDLQVCCPGSCFLF 218 (219)
Q Consensus 172 ---~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~-----~~~q~i~~SATl~~ 218 (219)
++++++++|+||+|+|.+.|+...+..+++.+. ...|.+.|||||+-
T Consensus 334 ~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~ 388 (731)
T KOG0347|consen 334 HLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTL 388 (731)
T ss_pred hhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeeh
Confidence 678899999999999999999999999998875 35799999999973
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.9e-34 Score=230.58 Aligned_cols=187 Identities=32% Similarity=0.534 Sum_probs=177.4
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-CCceeEEEEcCC
Q 027749 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPT 110 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~lil~P~ 110 (219)
.-+|.+++|+..+.+++++.||..|+|+|++.+|.++.+++++-.+-||+|||.||++|++..+... ..+.+++++.||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 4689999999999999999999999999999999999999999999999999999999999988653 456789999999
Q ss_pred HHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
++|+.|....++++++..+.+..+++|+.+.++++..+..++|||++||++++.+.-.-.+.++.+.|||+||+|.++++
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999877666688999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 191 GFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 191 ~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
||.+++..++..+|.+.|.++||||+|.
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~ 207 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPR 207 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCch
Confidence 9999999999999999999999999995
No 32
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.98 E-value=5.5e-31 Score=197.97 Aligned_cols=160 Identities=24% Similarity=0.416 Sum_probs=141.2
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEE
Q 027749 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (219)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (219)
||+|.++|+.+.+++++++.+|||+|||++++++++..+... ...++++++|++++++|+.+.+.+++...++++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999988776 5568999999999999999999999988788999988
Q ss_pred CCcccH-HHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCC--CCCeEEEEe
Q 027749 137 GGKSVG-EDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP--PDLQVCCPG 213 (219)
Q Consensus 137 ~~~~~~-~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~--~~~q~i~~S 213 (219)
++.+.. .....+.++++|+|+||++|.+++..+..++.++++||+||+|.+.++.+...+..+++.+. ++.|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 888755 33344556899999999999999988666778899999999999998888888999988873 368999999
Q ss_pred eccc
Q 027749 214 SCFL 217 (219)
Q Consensus 214 ATl~ 217 (219)
||++
T Consensus 160 AT~~ 163 (169)
T PF00270_consen 160 ATLP 163 (169)
T ss_dssp SSST
T ss_pred eCCC
Confidence 9997
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.98 E-value=8.2e-31 Score=235.89 Aligned_cols=185 Identities=18% Similarity=0.205 Sum_probs=148.4
Q ss_pred CccCccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEE
Q 027749 30 EAITSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (219)
Q Consensus 30 ~~~~~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (219)
.....+..++ +++.+.++|.+.|+..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... .++++||+
T Consensus 9 ~~~a~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l 87 (742)
T TIGR03817 9 ARAGRTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYL 87 (742)
T ss_pred CCCcccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEE
Confidence 3334444443 89999999999999999999999999999999999999999999999999999988764 45789999
Q ss_pred cCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcC----CCCCCCccEEEecc
Q 027749 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDE 183 (219)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~----~~~~~~l~~lVvDE 183 (219)
+||++|+.|+.+.++++. ..++++..+.|+.+. .+...+..+++|+|+||+.+...+... ...++++++||+||
T Consensus 88 ~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDE 165 (742)
T TIGR03817 88 APTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDE 165 (742)
T ss_pred cChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeC
Confidence 999999999999999987 346777666666654 444566778999999999987533211 12378999999999
Q ss_pred chhhhccccHHHHHHHHH-------hCCCCCeEEEEeecccC
Q 027749 184 SDEMLSRGFKDQIYDVYR-------YLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 184 ~h~l~~~~~~~~~~~i~~-------~~~~~~q~i~~SATl~~ 218 (219)
+|.+.+ .|...+..+++ ..+.++|++++|||++.
T Consensus 166 ah~~~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n 206 (742)
T TIGR03817 166 CHSYRG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTAD 206 (742)
T ss_pred hhhccC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCC
Confidence 999865 35555444433 34667899999999975
No 34
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=1.3e-30 Score=235.31 Aligned_cols=179 Identities=13% Similarity=0.189 Sum_probs=158.7
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHH
Q 027749 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (219)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 112 (219)
+|+++++++.+.+.+.+.|+..|+|+|.++++. +.+|+|+++++|||+|||++|.+|+++.+... +.++||++|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 578999999999999999999999999999986 78999999999999999999999999887653 457999999999
Q ss_pred HHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcccc
Q 027749 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (219)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~ 192 (219)
|+.|+++.+.++. ..++++..+.|+.+.... ....++|+|+||+++..++.++...++++++||+||+|.+.+.++
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999998764 357888888888765432 235689999999999999887777789999999999999998888
Q ss_pred HHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 193 KDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 193 ~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
...+..++..++.+.|++++|||++.
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n 181 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGN 181 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCC
Confidence 89999999999989999999999963
No 35
>PRK02362 ski2-like helicase; Provisional
Probab=99.97 E-value=1e-30 Score=236.58 Aligned_cols=178 Identities=17% Similarity=0.240 Sum_probs=153.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHH
Q 027749 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (219)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 112 (219)
.|+++++++.+.+++.+.|+..|+|+|.++++. +.+|+|+++++|||+|||++|.+++++.+.. +.+++|++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 588999999999999999999999999999998 7789999999999999999999999998853 457999999999
Q ss_pred HHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcccc
Q 027749 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (219)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~ 192 (219)
|+.|+++.+.++.. .++++..+.|+...... ....++|+|+||+++..++.+...+++++++||+||+|.+.+.++
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999997654 47888888887664432 234689999999999999887666789999999999999988777
Q ss_pred HHHHHHHHHhC---CCCCeEEEEeecccC
Q 027749 193 KDQIYDVYRYL---PPDLQVCCPGSCFLF 218 (219)
Q Consensus 193 ~~~~~~i~~~~---~~~~q~i~~SATl~~ 218 (219)
+..++.++..+ ++..|++++|||++.
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n 183 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGN 183 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCC
Confidence 77776665544 568999999999974
No 36
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.5e-31 Score=215.37 Aligned_cols=190 Identities=57% Similarity=0.928 Sum_probs=177.0
Q ss_pred CccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
+-..+|++++|.+.+++.+...||++|+.+|++|+..+..|+|+.+.+++|+|||.+|.+++++.+........+++++|
T Consensus 23 evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaP 102 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAP 102 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcc
Confidence 44569999999999999999999999999999999999999999999999999999999999999988777888999999
Q ss_pred CHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh-cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhh
Q 027749 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~ 188 (219)
+++|+.|+......++...++++..+.|+.+...+...+ ..++.|+|+||++..+++....+..+.++++|+||+|.|+
T Consensus 103 treLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmL 182 (397)
T KOG0327|consen 103 TRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEML 182 (397)
T ss_pred hHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhh
Confidence 999999999999999999999999999999988555554 4568999999999999999888888889999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCeEEEEeecccCC
Q 027749 189 SRGFKDQIYDVYRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~q~i~~SATl~~~ 219 (219)
+.+|.+++..+++.+|++.|++++|||.|.|
T Consensus 183 s~gfkdqI~~if~~lp~~vQv~l~SAT~p~~ 213 (397)
T KOG0327|consen 183 SRGFKDQIYDIFQELPSDVQVVLLSATMPSD 213 (397)
T ss_pred ccchHHHHHHHHHHcCcchhheeecccCcHH
Confidence 9999999999999999999999999999864
No 37
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=5.3e-31 Score=223.77 Aligned_cols=191 Identities=27% Similarity=0.491 Sum_probs=177.1
Q ss_pred CCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEE
Q 027749 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (219)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~li 106 (219)
..+.....|+++.|...++..|+..+|..|+++|..|||.++.+.|+||++..|+|||++|.+.+++.+......++++|
T Consensus 19 V~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~I 98 (980)
T KOG4284|consen 19 VQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVI 98 (980)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEE
Confidence 34666788999999999999999999999999999999999999999999999999999999999998887777899999
Q ss_pred EcCCHHHHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccch
Q 027749 107 LSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (219)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h 185 (219)
|+||++++.|+.+.+.+++..+ +.++..++||.....+...+ +.|.|+|+||+++..+++.+.++.+.++++|+||||
T Consensus 99 v~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEAD 177 (980)
T KOG4284|consen 99 VTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEAD 177 (980)
T ss_pred EecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHhcCCCccceeEEEeccHH
Confidence 9999999999999999998754 89999999999988776665 458899999999999999999999999999999999
Q ss_pred hhhcc-ccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 186 EMLSR-GFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 186 ~l~~~-~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
.|++. .|...+..|++.||+..|++.||||.|.
T Consensus 178 kL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~ 211 (980)
T KOG4284|consen 178 KLMDTESFQDDINIIINSLPQIRQVAAFSATYPR 211 (980)
T ss_pred hhhchhhHHHHHHHHHHhcchhheeeEEeccCch
Confidence 99984 7999999999999999999999999985
No 38
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.1e-29 Score=192.65 Aligned_cols=188 Identities=31% Similarity=0.543 Sum_probs=174.7
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
.+.|.++-+.+.+++++.+.||+.|..+|.+++|...-|.+++++|..|.|||.+|.++-++.+....+...++++|.|+
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtr 120 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTR 120 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccH
Confidence 35688888999999999999999999999999999999999999999999999999999999998888888899999999
Q ss_pred HHHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 112 ELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 112 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
+||-|+..+...+.++. ++.+..++||.+.......+.+.+.|+|+||++++.+.+++.+++++++.+|+||||.|+++
T Consensus 121 elafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~ 200 (387)
T KOG0329|consen 121 ELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQ 200 (387)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHH
Confidence 99999999998888776 57888899999988877778888899999999999999999999999999999999999976
Q ss_pred -ccHHHHHHHHHhCCCCCeEEEEeecccCC
Q 027749 191 -GFKDQIYDVYRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 191 -~~~~~~~~i~~~~~~~~q~i~~SATl~~~ 219 (219)
.++.+++.+.+..|...|+..||||++.|
T Consensus 201 lDMrRDvQEifr~tp~~KQvmmfsatlske 230 (387)
T KOG0329|consen 201 LDMRRDVQEIFRMTPHEKQVMMFSATLSKE 230 (387)
T ss_pred HHHHHHHHHHhhcCcccceeeeeeeecchh
Confidence 68899999999999999999999999864
No 39
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.2e-29 Score=207.50 Aligned_cols=174 Identities=21% Similarity=0.433 Sum_probs=146.9
Q ss_pred CCccCccccCCCCHH----------HHHHHHHCCCCCChHHHHHHHHHHh---------CCCcEEEEcCCCCchhHHhHH
Q 027749 29 VEAITSFDAMGIKDD----------LLRGIYQYGFEKPSAIQQRAVMPII---------KGRDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~----------~~~~l~~~~~~~~~~~Q~~~~~~~~---------~~~~~lv~~~tG~GKT~~~~~ 89 (219)
.....-|+.++.+.. +.+++.++++....|+|..++|.++ ..+|+.|.||||||||++|.+
T Consensus 123 ~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~i 202 (620)
T KOG0350|consen 123 NNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVI 202 (620)
T ss_pred CCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehh
Confidence 344455666665554 3445889999999999999999874 357999999999999999999
Q ss_pred HHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCC-----CeEEEeChHHHH
Q 027749 90 TVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-----VHVVSGTPGRVC 163 (219)
Q Consensus 90 ~~~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~I~v~Tp~~l~ 163 (219)
|+.+.+... -...+|+|++|+++|+.|++..+.++....++.|+.+.|..+...+.+.+.+. .+|+|+||++|.
T Consensus 203 PIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLV 282 (620)
T KOG0350|consen 203 PIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLV 282 (620)
T ss_pred HHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHH
Confidence 999988766 34578999999999999999999999999999999999999999988888653 389999999999
Q ss_pred HHHHc-CCCCCCCccEEEeccchhhhccccHHHHHHHHHh
Q 027749 164 DMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (219)
Q Consensus 164 ~~l~~-~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~ 202 (219)
+.+.+ ..+++++++|+||||||+|++..|...+-.++..
T Consensus 283 DHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~ 322 (620)
T KOG0350|consen 283 DHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSL 322 (620)
T ss_pred HhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHH
Confidence 99985 6789999999999999999987766655544443
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.96 E-value=9.9e-29 Score=226.26 Aligned_cols=178 Identities=17% Similarity=0.223 Sum_probs=142.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC------CCceeEEEEcCCHHH
Q 027749 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTREL 113 (219)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~------~~~~~~lil~P~~~l 113 (219)
+++.+.+.+.+ +|..|+|+|.++|+.+++|+|+++++|||+|||++|.+|+++.+... ..++++||++|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56667776655 78899999999999999999999999999999999999999877532 235789999999999
Q ss_pred HHHHHHHHHH-------hc----ccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCC--CCCCccEE
Q 027749 114 ATQTEKVILA-------IG----DFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL--RTRAIKLL 179 (219)
Q Consensus 114 ~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~--~~~~l~~l 179 (219)
++|+++.+.. +. ... ++++....|+.+..++...+.+.++|+|+||++|..++.+... .++++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886643 21 222 6778888888888777777778899999999999887765432 47899999
Q ss_pred EeccchhhhccccHHH----HHHHHHhCCCCCeEEEEeecccC
Q 027749 180 VLDESDEMLSRGFKDQ----IYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 180 VvDE~h~l~~~~~~~~----~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
|+||+|.+.+..+... +.++....+...|++++|||+++
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~ 219 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP 219 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC
Confidence 9999999997654444 33444444467899999999875
No 41
>PRK01172 ski2-like helicase; Provisional
Probab=99.96 E-value=4.1e-28 Score=218.00 Aligned_cols=177 Identities=19% Similarity=0.255 Sum_probs=149.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
+|+++++++.+.+.+.+.++. ++++|.++++.+.+++++++++|||+|||+++.+++++.+.. +.++||++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHH
Confidence 578899999999999998886 999999999999999999999999999999999999887764 3569999999999
Q ss_pred HHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccH
Q 027749 114 ATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (219)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~ 193 (219)
+.|+++.+.++. ..+.++....|+...... ..+.++|+|+||+++..++.+....++++++||+||+|.+.+.++.
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999998764 357788777877654332 2246899999999999998877667899999999999999887766
Q ss_pred HHHHHHHH---hCCCCCeEEEEeecccC
Q 027749 194 DQIYDVYR---YLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 194 ~~~~~i~~---~~~~~~q~i~~SATl~~ 218 (219)
..+..++. .++++.|+|++|||++.
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n 181 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSN 181 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCC
Confidence 66665544 45678999999999963
No 42
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=5.2e-29 Score=200.03 Aligned_cols=190 Identities=37% Similarity=0.592 Sum_probs=168.7
Q ss_pred ccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCce
Q 027749 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREV 102 (219)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~ 102 (219)
..++.....+|++++|.+.+++.+-.++|.+|+.+|..++|.++.. +|.|.++..|+|||.||.+.++.++......|
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~P 161 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVP 161 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCC
Confidence 3445567789999999999999999999999999999999999876 68999999999999999999999999888889
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc-CCCCCCCccEEEe
Q 027749 103 QALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVL 181 (219)
Q Consensus 103 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~-~~~~~~~l~~lVv 181 (219)
+++.++|+++||.|.-+.+.+.++..++...+.+.+.....- ..+ ..+|+|+||+.+.+++.. +.++++.++.+|+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvfVl 238 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVL 238 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhhceEEEe
Confidence 999999999999999999999999998888887766522111 111 358999999999998887 8889999999999
Q ss_pred ccchhhhcc-ccHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 182 DESDEMLSR-GFKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 182 DE~h~l~~~-~~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
||||.|++. ||.+.-.+|.+.+|+++|+++||||+.
T Consensus 239 DEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~ 275 (477)
T KOG0332|consen 239 DEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFV 275 (477)
T ss_pred cchhhhhhcccccccchhhhhhcCCcceEEeeechhH
Confidence 999999976 899999999999999999999999985
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.96 E-value=5.6e-28 Score=214.77 Aligned_cols=177 Identities=17% Similarity=0.189 Sum_probs=154.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-----CCceeEEEEcCCHHHH
Q 027749 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SREVQALILSPTRELA 114 (219)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-----~~~~~~lil~P~~~l~ 114 (219)
+++.+.+.+.+. |..|||.|.++||.+.+|+|++|.||||+|||+++.+|++..+... ..+..+||+.|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 788999999887 8999999999999999999999999999999999999999988766 2357899999999999
Q ss_pred HHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC--CCCCCccEEEeccchhhhcccc
Q 027749 115 TQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGF 192 (219)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~--~~~~~l~~lVvDE~h~l~~~~~ 192 (219)
+++...+..++...|+.+..-+|.++..+..+..++.++|+++||++|.-++.... -.+++++++||||+|.+.+..-
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 99999999999999999988888888888888888899999999999999887643 3578999999999999987642
Q ss_pred H----HHHHHHHHhCCCCCeEEEEeecccC
Q 027749 193 K----DQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 193 ~----~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+ -.++++.+..+ +.|.|++|||+.+
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~ 195 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGP 195 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCC
Confidence 2 33455555555 8999999999875
No 44
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.95 E-value=6.5e-27 Score=208.97 Aligned_cols=161 Identities=23% Similarity=0.285 Sum_probs=131.8
Q ss_pred CCCCCChHHHHHHHHHHhCCC-cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEE-EEcCCHHHHHHHHHHHHHhcccc
Q 027749 51 YGFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL-ILSPTRELATQTEKVILAIGDFI 128 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~-~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~l-il~P~~~l~~q~~~~~~~~~~~~ 128 (219)
.||. |+|+|.++++.++.|+ ++++++|||+|||.++.++++.. ......++.| +++|+++|+.|+++.+.++.+..
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 4776 9999999999999998 57788999999998776555533 2223334444 57799999999999999988754
Q ss_pred -----------------------ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCC-------------
Q 027749 129 -----------------------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLR------------- 172 (219)
Q Consensus 129 -----------------------~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~------------- 172 (219)
++++..++||.+...++..+..+++|+|+|+ +++.++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~~~pi~ 165 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFKSRPLH 165 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccccccch
Confidence 4888999999999999999999999999996 555555442
Q ss_pred ---CCCccEEEeccchhhhccccHHHHHHHHHhC--CCC---CeEEEEeecccCC
Q 027749 173 ---TRAIKLLVLDESDEMLSRGFKDQIYDVYRYL--PPD---LQVCCPGSCFLFD 219 (219)
Q Consensus 173 ---~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~--~~~---~q~i~~SATl~~~ 219 (219)
++++++||+|||| ++++|...+..|++.+ ++. +|+++||||+|.+
T Consensus 166 ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~e 218 (844)
T TIGR02621 166 AGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTD 218 (844)
T ss_pred hhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCcc
Confidence 6889999999999 6789999999999975 432 6999999999853
No 45
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=6.8e-26 Score=210.98 Aligned_cols=167 Identities=17% Similarity=0.237 Sum_probs=132.2
Q ss_pred HHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 46 RGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 46 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
+.+.+ .|+ .|+++|..++|.++.|+|++++||||+|||. |.++++..+.. .+++++|++||++|+.|+.+.++++
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 34443 355 8999999999999999999999999999995 54555444433 3678999999999999999999999
Q ss_pred ccccceeEEEEECCccc-----HHHHHHhc-CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc---------
Q 027749 125 GDFINIQAHACVGGKSV-----GEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS--------- 189 (219)
Q Consensus 125 ~~~~~~~~~~~~~~~~~-----~~~~~~l~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~--------- 189 (219)
+...++.+..+.|+.+. .+....+. .+++|+|+||++|.+.+. .+...++++||+||||+|++
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHH
Confidence 98888887777766542 22333444 468999999999998876 34556799999999999996
Q ss_pred --cccH-HHHHHHHHhCCC------------------------CCeEEEEeecccC
Q 027749 190 --RGFK-DQIYDVYRYLPP------------------------DLQVCCPGSCFLF 218 (219)
Q Consensus 190 --~~~~-~~~~~i~~~~~~------------------------~~q~i~~SATl~~ 218 (219)
.||. +.+..+++.++. ..|++++|||.++
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~ 280 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRP 280 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCc
Confidence 4674 677777777654 6899999999986
No 46
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=7.2e-26 Score=195.74 Aligned_cols=158 Identities=18% Similarity=0.264 Sum_probs=122.0
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
.+|+..|+|+|.++++.+++|+++++++|||+|||++|++|++.. +..+||++|+++|+.|+...+... +
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~----g 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS----G 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----C
Confidence 579999999999999999999999999999999999999998753 345999999999999998888754 5
Q ss_pred eeEEEEECCcccHHHHH---Hh-cCCCeEEEeChHHHHHHH-HcCCC-CCCCccEEEeccchhhhccc--cHHHHHHH--
Q 027749 130 IQAHACVGGKSVGEDIR---KL-EHGVHVVSGTPGRVCDMI-KRKTL-RTRAIKLLVLDESDEMLSRG--FKDQIYDV-- 199 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~---~l-~~~~~I~v~Tp~~l~~~l-~~~~~-~~~~l~~lVvDE~h~l~~~~--~~~~~~~i-- 199 (219)
+....+.++.+..+... .+ ....+|+++||+++.... ....+ ...++++|||||||++.+|+ |...+..+
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 66666666665543221 22 235899999999875321 01111 46789999999999999886 56555443
Q ss_pred -HHhCCCCCeEEEEeecccC
Q 027749 200 -YRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 200 -~~~~~~~~q~i~~SATl~~ 218 (219)
.+.+ ++.+++++|||.++
T Consensus 156 l~~~~-~~~~~l~lTAT~~~ 174 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASP 174 (470)
T ss_pred HHHHc-CCCceEEEecCCCH
Confidence 3344 57889999999875
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=3.3e-25 Score=201.42 Aligned_cols=176 Identities=18% Similarity=0.223 Sum_probs=136.2
Q ss_pred Cccc--cCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 33 TSFD--AMGIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 33 ~~~~--~~~l~~~~~~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
.+|. .++++..+...++ .+|+..++|.|.++|+.++.|+|+++++|||+|||+||++|++.. ...+|||+|
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISP 508 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISP 508 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeC
Confidence 4465 4677888887777 578999999999999999999999999999999999999999863 246999999
Q ss_pred CHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc------CCCeEEEeChHHHHH---HHHc--CCCCCCCccE
Q 027749 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE------HGVHVVSGTPGRVCD---MIKR--KTLRTRAIKL 178 (219)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~I~v~Tp~~l~~---~l~~--~~~~~~~l~~ 178 (219)
+++|+.++...+... ++....+.++.+..++...+. ..++|+++||+++.. ++.. .......+.+
T Consensus 509 LiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~Lsl 584 (1195)
T PLN03137 509 LVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLAR 584 (1195)
T ss_pred HHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccce
Confidence 999998666655543 677888888877665544332 468999999999862 2221 1112345889
Q ss_pred EEeccchhhhccc--cHHHHHHH--HHhCCCCCeEEEEeecccC
Q 027749 179 LVLDESDEMLSRG--FKDQIYDV--YRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 179 lVvDE~h~l~~~~--~~~~~~~i--~~~~~~~~q~i~~SATl~~ 218 (219)
|||||||++.+|| |+..+..+ +....++.|+++||||.++
T Consensus 585 IVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~ 628 (1195)
T PLN03137 585 FVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATA 628 (1195)
T ss_pred eccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCH
Confidence 9999999999997 77766653 4444457889999999875
No 48
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.93 E-value=8e-25 Score=198.51 Aligned_cols=177 Identities=20% Similarity=0.266 Sum_probs=143.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 027749 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (219)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (219)
....+..++.+.|...++++|.+|+..+.+|+|++|..|||||||.+|++|+++.+...... ++|+|.||++|++++.+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHH
Confidence 44556888999999999999999999999999999999999999999999999999876553 79999999999999999
Q ss_pred HHHHhccccc--eeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC----CCCCCccEEEeccchhhhccccH
Q 027749 120 VILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT----LRTRAIKLLVLDESDEMLSRGFK 193 (219)
Q Consensus 120 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~----~~~~~l~~lVvDE~h~l~~~~~~ 193 (219)
++.++....+ +......|.....+......+.++|++++|+.|..++.... ..++++++|||||+|. +.-.|+
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt-YrGv~G 212 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT-YRGVQG 212 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee-ccccch
Confidence 9999988776 66666666666666556678899999999999998554322 3457799999999995 433345
Q ss_pred HHHHHHHHh-------CCCCCeEEEEeecccC
Q 027749 194 DQIYDVYRY-------LPPDLQVCCPGSCFLF 218 (219)
Q Consensus 194 ~~~~~i~~~-------~~~~~q~i~~SATl~~ 218 (219)
..+..+++. .+.+.|+|+.|||+..
T Consensus 213 S~vA~llRRL~~~~~~~~~~~q~i~~SAT~~n 244 (851)
T COG1205 213 SEVALLLRRLLRRLRRYGSPLQIICTSATLAN 244 (851)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeccccC
Confidence 444433333 3458899999999864
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.92 E-value=3.8e-24 Score=195.32 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=132.7
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHhCC------CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 39 GIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 39 ~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
+.+..+.+.+.+ ++| .||+.|..+++.+.++ ++.+++|+||+|||.+|+.+++..+.. +.+++|++||+
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~ 510 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTT 510 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcH
Confidence 345566666664 577 6999999999999875 689999999999999999999887754 36799999999
Q ss_pred HHHHHHHHHHHHhccccceeEEEEECCcccHHH---HHHhcC-CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhh
Q 027749 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (219)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~-~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l 187 (219)
+||.|+++.+.++....++++..+.|..+..++ ...+.. .++|+|+||.. + ++.+.++++++||+||+|++
T Consensus 511 ~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahrf 585 (926)
T TIGR00580 511 LLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQRF 585 (926)
T ss_pred HHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeeccccc
Confidence 999999999999888888888888877664433 233333 58999999942 2 35567899999999999984
Q ss_pred hccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 188 LSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
.......++.++++.|+++||||..+
T Consensus 586 -----gv~~~~~L~~~~~~~~vL~~SATpip 611 (926)
T TIGR00580 586 -----GVKQKEKLKELRTSVDVLTLSATPIP 611 (926)
T ss_pred -----chhHHHHHHhcCCCCCEEEEecCCCH
Confidence 33455667778888999999999654
No 50
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.92 E-value=2.5e-24 Score=190.98 Aligned_cols=168 Identities=16% Similarity=0.202 Sum_probs=126.4
Q ss_pred CCHHHHHHHH-HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 027749 40 IKDDLLRGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (219)
Q Consensus 40 l~~~~~~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 118 (219)
......+.|+ .+|+..|+|+|.++++.+++|+++++++|||+|||++|++|++.. ...+||++|+++|+.|+.
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHH
Confidence 3444445555 469999999999999999999999999999999999999998753 235999999999999999
Q ss_pred HHHHHhccccceeEEEEECCcccHHHHHH---h-cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc--c
Q 027749 119 KVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--F 192 (219)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~--~ 192 (219)
+.+... ++....+.+..+....... + ....+++++||+++........+...++++|||||||++.+|+ |
T Consensus 83 ~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~f 158 (607)
T PRK11057 83 DQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDF 158 (607)
T ss_pred HHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcc
Confidence 888765 5666666666555443222 2 2357899999999874221122334579999999999999986 5
Q ss_pred HHHHH---HHHHhCCCCCeEEEEeecccC
Q 027749 193 KDQIY---DVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 193 ~~~~~---~i~~~~~~~~q~i~~SATl~~ 218 (219)
...+. .+.+.+ ++.+++++|||.+.
T Consensus 159 r~~y~~L~~l~~~~-p~~~~v~lTAT~~~ 186 (607)
T PRK11057 159 RPEYAALGQLRQRF-PTLPFMALTATADD 186 (607)
T ss_pred cHHHHHHHHHHHhC-CCCcEEEEecCCCh
Confidence 55443 334444 47899999999875
No 51
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=2.5e-25 Score=187.70 Aligned_cols=192 Identities=26% Similarity=0.386 Sum_probs=157.6
Q ss_pred CCCCccCcccc----CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC----
Q 027749 27 EGVEAITSFDA----MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---- 98 (219)
Q Consensus 27 ~~~~~~~~~~~----~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~---- 98 (219)
..+.++.+|.+ ...+..+++.+.+.+|..|+|.|.+++|.++.+++++.|+|||+|||++|.+|++..+...
T Consensus 126 ~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~ 205 (593)
T KOG0344|consen 126 HLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEK 205 (593)
T ss_pred CCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhccc
Confidence 34778888887 4578999999999999999999999999999999999999999999999999999988542
Q ss_pred -CCceeEEEEcCCHHHHHHHHHHHHHhc--cccceeEEEEECCcccHHH-HHHhcCCCeEEEeChHHHHHHHHcCC--CC
Q 027749 99 -SREVQALILSPTRELATQTEKVILAIG--DFINIQAHACVGGKSVGED-IRKLEHGVHVVSGTPGRVCDMIKRKT--LR 172 (219)
Q Consensus 99 -~~~~~~lil~P~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~l~~~~~I~v~Tp~~l~~~l~~~~--~~ 172 (219)
..+.+++|+.|+++|+.|++.++.++. ...+.+............. .......++|+|+||.++..++.... ++
T Consensus 206 ~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~id 285 (593)
T KOG0344|consen 206 HKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNID 285 (593)
T ss_pred CccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccch
Confidence 456899999999999999999999998 4444444333222111111 11122358999999999999998765 78
Q ss_pred CCCccEEEeccchhhhcc-ccHHHHHHHHHhCC-CCCeEEEEeecccC
Q 027749 173 TRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVCCPGSCFLF 218 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~-~~~q~i~~SATl~~ 218 (219)
+..+.++|+||+|.+++. .|..++-.|+..+. ++..+=+||||+|.
T Consensus 286 l~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~ 333 (593)
T KOG0344|consen 286 LSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISV 333 (593)
T ss_pred hheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccH
Confidence 899999999999999999 89999999988874 47788899999985
No 52
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=4.8e-24 Score=202.75 Aligned_cols=170 Identities=16% Similarity=0.193 Sum_probs=130.7
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 027749 43 DLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (219)
Q Consensus 43 ~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (219)
.+.+.+++ .|+ .|+++|..+++.+++|+++++++|||+|||++++++.+.... .+.+++||+||++|+.|+.+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHH
Confidence 34455655 788 699999999999999999999999999999876665554422 3567999999999999999999
Q ss_pred HHhcccc--ceeEEEEECCcccHHHH---HHhcC-CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc------
Q 027749 122 LAIGDFI--NIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS------ 189 (219)
Q Consensus 122 ~~~~~~~--~~~~~~~~~~~~~~~~~---~~l~~-~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~------ 189 (219)
+.++... ++++..++|+.+..++. ..+.. +++|+|+||+.|.+.+... . ..++++|||||||+|++
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccc
Confidence 9988765 46667778888766553 33444 5899999999988766542 1 26799999999999986
Q ss_pred -----cccHHHHHH----HHH----------------------hCCCCCe-EEEEeecccC
Q 027749 190 -----RGFKDQIYD----VYR----------------------YLPPDLQ-VCCPGSCFLF 218 (219)
Q Consensus 190 -----~~~~~~~~~----i~~----------------------~~~~~~q-~i~~SATl~~ 218 (219)
.+|..++.. +++ .+++..| ++++|||.++
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~ 281 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKA 281 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCc
Confidence 367766653 322 2345556 6789999985
No 53
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.92 E-value=8.9e-25 Score=195.90 Aligned_cols=174 Identities=16% Similarity=0.220 Sum_probs=144.8
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 027749 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (219)
Q Consensus 39 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (219)
.++..+...+...++...++.|+.++.. +.+++|++|++|||+|||+.+++.+++.+... +.+++|+||+++||.+.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek 92 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEK 92 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHH
Confidence 3778888888888887888888888766 44669999999999999999999999988876 45699999999999999
Q ss_pred HHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHH
Q 027749 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (219)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~ 197 (219)
++.++ .....|+++....|......+ ...+++|+|+||+++..++++.......+++||+||+|.+.+......++
T Consensus 93 ~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE 168 (766)
T COG1204 93 YEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLE 168 (766)
T ss_pred HHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceeh
Confidence 99999 445569999999888775542 23579999999999999999988889999999999999988875455555
Q ss_pred HHHHhC---CCCCeEEEEeecccC
Q 027749 198 DVYRYL---PPDLQVCCPGSCFLF 218 (219)
Q Consensus 198 ~i~~~~---~~~~q~i~~SATl~~ 218 (219)
.++..+ ...+|++++|||+|.
T Consensus 169 ~iv~r~~~~~~~~rivgLSATlpN 192 (766)
T COG1204 169 SIVARMRRLNELIRIVGLSATLPN 192 (766)
T ss_pred hHHHHHHhhCcceEEEEEeeecCC
Confidence 555544 445899999999985
No 54
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=7.5e-24 Score=197.61 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=109.8
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 027749 44 LLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (219)
Q Consensus 44 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (219)
+.+.+.+.....|+++|..+++.++.|++++++||||+|||. |.+++...+... +++++|++||++|+.|+.+.+.+
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~--g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKK--GKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhc--CCeEEEEeCHHHHHHHHHHHHHH
Confidence 444454444458999999999999999999999999999996 656666555433 57899999999999999999999
Q ss_pred hccccceeEE---EEECCcccHHH---HHHhc-CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 124 IGDFINIQAH---ACVGGKSVGED---IRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 124 ~~~~~~~~~~---~~~~~~~~~~~---~~~l~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
+....++.+. .++|+.+..++ ...+. ++++|+|+||++|.+.+.... . +++++|+||||+|++
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhh
Confidence 9877665543 45677766543 23333 359999999999998776422 2 899999999999998
No 55
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.92 E-value=4.8e-24 Score=189.20 Aligned_cols=161 Identities=16% Similarity=0.204 Sum_probs=125.8
Q ss_pred HHH-HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 47 GIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 47 ~l~-~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
.|+ .+||..++|.|.++++.+++|+|+++++|||+|||++|++|++.. ...++|++|+.+|+.|+...+..+
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 454 479999999999999999999999999999999999999998742 235899999999999999988775
Q ss_pred cccceeEEEEECCcccHHHHHH----hcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc--cHHHHHHH
Q 027749 126 DFINIQAHACVGGKSVGEDIRK----LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYDV 199 (219)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~----l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~--~~~~~~~i 199 (219)
++.+..+.++.+..+.... .....+|+++||+++........+...++++|||||||++.+|+ |+..+..+
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l 153 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRL 153 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHH
Confidence 5667777777665543322 23568999999999875333333456789999999999999886 66554444
Q ss_pred ---HHhCCCCCeEEEEeecccC
Q 027749 200 ---YRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 200 ---~~~~~~~~q~i~~SATl~~ 218 (219)
.+.++. .+++++|||.++
T Consensus 154 ~~l~~~~~~-~~vi~lTAT~~~ 174 (591)
T TIGR01389 154 GSLAERFPQ-VPRIALTATADA 174 (591)
T ss_pred HHHHHhCCC-CCEEEEEeCCCH
Confidence 444544 459999999875
No 56
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.92 E-value=1.2e-23 Score=188.68 Aligned_cols=163 Identities=20% Similarity=0.253 Sum_probs=129.2
Q ss_pred HHHHHHHH-HCCCCCChHHHHHHHHHHhCC------CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHH
Q 027749 42 DDLLRGIY-QYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (219)
Q Consensus 42 ~~~~~~l~-~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 114 (219)
..+.+.+. ..+| .||+.|+++++.+.++ ++.+++|+||+|||++|+++++..+.. +.+++|++||++||
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA 323 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILA 323 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHH
Confidence 44555554 5556 7999999999999876 479999999999999999999887754 56799999999999
Q ss_pred HHHHHHHHHhccccceeEEEEECCcccHHH---HHHhcC-CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 115 TQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~-~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
.|+++.+++++...++++..+.|+.+..++ ...+.. .++|+|+||+.+. ..+.+++++++|+||+|++.
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-----~~v~~~~l~lvVIDE~Hrfg-- 396 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-----DDVEFHNLGLVIIDEQHRFG-- 396 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-----ccchhcccceEEEechhhhh--
Confidence 999999999998889999999999885443 333433 5999999997664 34567899999999999853
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 191 GFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 191 ~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
......+.......++++||||..+
T Consensus 397 ---~~qr~~l~~~~~~~~iL~~SATp~p 421 (681)
T PRK10917 397 ---VEQRLALREKGENPHVLVMTATPIP 421 (681)
T ss_pred ---HHHHHHHHhcCCCCCEEEEeCCCCH
Confidence 2233344444557899999999643
No 57
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.91 E-value=4.6e-23 Score=191.85 Aligned_cols=164 Identities=16% Similarity=0.203 Sum_probs=129.5
Q ss_pred CHHHHHH-HHHCCCCCChHHHHHHHHHHhCC------CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 41 KDDLLRG-IYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 41 ~~~~~~~-l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
+....+. ...+.| .|++.|.++|+.++.+ ++.+++++||+|||.+|+.+++..+.. +.+++|++||++|
T Consensus 586 ~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eL 661 (1147)
T PRK10689 586 DREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLL 661 (1147)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHH
Confidence 3334444 456667 7999999999999876 799999999999999998887666542 5679999999999
Q ss_pred HHHHHHHHHHhccccceeEEEEECCcccHHHHHHh---c-CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 114 ATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
|.|+++.+.+.....++++..+.|+.+..++...+ . .+++|+|+||+.+ +..+.++++++|||||+|++
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrf-- 734 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRF-- 734 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhc--
Confidence 99999999987777778888888877766654433 2 4689999999633 24456789999999999996
Q ss_pred cccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 190 RGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
++. ....++.++.++|+++||||.++
T Consensus 735 -G~~--~~e~lk~l~~~~qvLl~SATpip 760 (1147)
T PRK10689 735 -GVR--HKERIKAMRADVDILTLTATPIP 760 (1147)
T ss_pred -chh--HHHHHHhcCCCCcEEEEcCCCCH
Confidence 322 34556778889999999999764
No 58
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=5.8e-23 Score=183.02 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=126.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhCC------CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 027749 44 LLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (219)
Q Consensus 44 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (219)
+.+.+...+| .||+.|+++++.+.++ .+.+++|+||+|||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQH 300 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHH
Confidence 3445567777 7999999999998865 368999999999999999999887754 45799999999999999
Q ss_pred HHHHHHhccccceeEEEEECCcccHHH---HHHhc-CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccH
Q 027749 118 EKVILAIGDFINIQAHACVGGKSVGED---IRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (219)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~ 193 (219)
++.+.+++...++++..+.|+.+..++ ...+. ..++|+|+||+.+.+ ...+++++++|+||+|++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~--- 372 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE--- 372 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH---
Confidence 999999998889999999998876553 23333 358999999986642 356789999999999985321
Q ss_pred HHHHHHHHhCC--CCCeEEEEeecccC
Q 027749 194 DQIYDVYRYLP--PDLQVCCPGSCFLF 218 (219)
Q Consensus 194 ~~~~~i~~~~~--~~~q~i~~SATl~~ 218 (219)
....+.+... ..+++++||||..+
T Consensus 373 -qr~~l~~~~~~~~~~~~l~~SATp~p 398 (630)
T TIGR00643 373 -QRKKLREKGQGGFTPHVLVMSATPIP 398 (630)
T ss_pred -HHHHHHHhcccCCCCCEEEEeCCCCc
Confidence 1122222222 26789999999654
No 59
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.91 E-value=2.7e-22 Score=153.30 Aligned_cols=168 Identities=32% Similarity=0.532 Sum_probs=139.9
Q ss_pred HCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (219)
.+++..++++|.++++.+..+ ++.++.++||+|||.++..+++..+.... ..++++++|+..++.|+...+.+.....
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 346778999999999999988 99999999999999988888888776543 3469999999999999999998887655
Q ss_pred ceeEEEEECCcccHHHHHHhcCCC-eEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCC
Q 027749 129 NIQAHACVGGKSVGEDIRKLEHGV-HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~-~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~ 207 (219)
........++......+..+..+. +++++|++.+.+.+........+++++|+||+|.+....+...+..++..+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 161 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV 161 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccc
Confidence 434444555555555666666665 9999999999998888766778899999999999887577889999999888889
Q ss_pred eEEEEeecccC
Q 027749 208 QVCCPGSCFLF 218 (219)
Q Consensus 208 q~i~~SATl~~ 218 (219)
+++++|||.+.
T Consensus 162 ~~v~~saT~~~ 172 (201)
T smart00487 162 QLLLLSATPPE 172 (201)
T ss_pred eEEEEecCCch
Confidence 99999999864
No 60
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.90 E-value=4e-23 Score=193.98 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=118.5
Q ss_pred EEcCCCCchhHHhHHHHHhhhccC----------CCceeEEEEcCCHHHHHHHHHHHHHhc------------cccceeE
Q 027749 75 AQAQSGTGKTSMIALTVCQTVDTS----------SREVQALILSPTRELATQTEKVILAIG------------DFINIQA 132 (219)
Q Consensus 75 v~~~tG~GKT~~~~~~~~~~~~~~----------~~~~~~lil~P~~~l~~q~~~~~~~~~------------~~~~~~~ 132 (219)
|++|||||||++|.+|++..+... ..+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999987643 235789999999999999999886421 1246888
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC-CCCCCccEEEeccchhhhccc----cHHHHHHHHHhCCCCC
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLPPDL 207 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~-~~~~~l~~lVvDE~h~l~~~~----~~~~~~~i~~~~~~~~ 207 (219)
....|+.+..++.+.+.+.++|+|+||++|..++.++. ..++++++|||||+|.+.+.. +...+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 88899998888777777889999999999999876543 468999999999999998753 3455666666677889
Q ss_pred eEEEEeecccC
Q 027749 208 QVCCPGSCFLF 218 (219)
Q Consensus 208 q~i~~SATl~~ 218 (219)
|+|++|||+++
T Consensus 161 QrIgLSATI~n 171 (1490)
T PRK09751 161 QRIGLSATVRS 171 (1490)
T ss_pred eEEEEEeeCCC
Confidence 99999999975
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.89 E-value=3.1e-22 Score=174.24 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=115.4
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeE
Q 027749 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (219)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (219)
...|+++|.++++.++.+++.++++|||+|||+++...+ ...... ...++||++||++|+.|+.+.+.++.......+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~-~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~ 189 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN-YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAM 189 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc-CCCeEEEEECcHHHHHHHHHHHHHhccccccce
Confidence 358999999999999999999999999999998765432 222222 234799999999999999999999875544445
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
..+.++.... .+.+|+|+||+++.+... ..++++++||+||||++... .+..+++.+++..++++|
T Consensus 190 ~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGL 255 (501)
T PHA02558 190 HKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGL 255 (501)
T ss_pred eEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEE
Confidence 4555554432 357899999999876432 24678999999999998754 456777777777899999
Q ss_pred eecccC
Q 027749 213 GSCFLF 218 (219)
Q Consensus 213 SATl~~ 218 (219)
|||++.
T Consensus 256 TATp~~ 261 (501)
T PHA02558 256 TGSLRD 261 (501)
T ss_pred eccCCC
Confidence 999863
No 62
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=2.8e-22 Score=178.28 Aligned_cols=164 Identities=13% Similarity=0.206 Sum_probs=129.7
Q ss_pred CCCCCChHHHHHHHHHHh-CCCcEEEEcCCCCchhHHhHHHHHhhhcc-------CCCceeEEEEcCCHHHHHHHHHHHH
Q 027749 51 YGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDT-------SSREVQALILSPTRELATQTEKVIL 122 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~-~~~~~lv~~~tG~GKT~~~~~~~~~~~~~-------~~~~~~~lil~P~~~l~~q~~~~~~ 122 (219)
+++..++.+|..++|.+- ++.|.+||||||+|||..+++.+++.+.. .....+++|++|.++||.++.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 456788999999999865 56799999999999999999999988864 2346789999999999999999998
Q ss_pred HhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC---CCCCCccEEEeccchhhhccccHHHHHHH
Q 027749 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---LRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (219)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~---~~~~~l~~lVvDE~h~l~~~~~~~~~~~i 199 (219)
+-+...++.+..+.|.......- -..|+|+|+||+++--.-+... ..++.+++||+||+|.+-+. .+..++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHH
Confidence 88888899999999877654432 2369999999999865544332 23577899999999987765 23333333
Q ss_pred H-------HhCCCCCeEEEEeecccC
Q 027749 200 Y-------RYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 200 ~-------~~~~~~~q~i~~SATl~~ 218 (219)
+ +......+++++|||+|.
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN 287 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN 287 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC
Confidence 3 334557889999999995
No 63
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.1e-21 Score=175.63 Aligned_cols=149 Identities=18% Similarity=0.302 Sum_probs=129.3
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEE
Q 027749 36 DAMGIKDDLLRGIY-----QYGFEKP---SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (219)
Q Consensus 36 ~~~~l~~~~~~~l~-----~~~~~~~---~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (219)
+.+.+...+.+.+. ..|+..| +|+|.++++.+..+++++.+++||+|||++|++|++..+.... .++||
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~---~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGK---PVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC---CeEEE
Confidence 44567777776665 5688888 9999999999999999999999999999999999998776532 38999
Q ss_pred cCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHH-HHHHHcCCCCCC-------CccEE
Q 027749 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKTLRTR-------AIKLL 179 (219)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l-~~~l~~~~~~~~-------~l~~l 179 (219)
+|+++||.|..+.+..+.+..++++.+++|+.+..++...+ +|+|+|+||++| .++++.+.+.++ .+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999999999999999999988876555 599999999999 999988766655 45899
Q ss_pred Eeccchhhhc
Q 027749 180 VLDESDEMLS 189 (219)
Q Consensus 180 VvDE~h~l~~ 189 (219)
|+||||.|+-
T Consensus 220 IIDEADsmLi 229 (970)
T PRK12899 220 IIDEVDSILI 229 (970)
T ss_pred EEechhhhhh
Confidence 9999998874
No 64
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.86 E-value=4.5e-21 Score=162.01 Aligned_cols=183 Identities=18% Similarity=0.199 Sum_probs=149.3
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
-..+++++++.+...|+..|+..+.|+|..++.. ++.|.|.+|+++|+||||++.-++-+..+... +.+-+|++|..
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--g~KmlfLvPLV 271 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG--GKKMLFLVPLV 271 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--CCeEEEEehhH
Confidence 4678899999999999999999999999999987 88999999999999999999999999988875 34599999999
Q ss_pred HHHHHHHHHHHHhccccceeEEEEECCcccHHHH----HHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhh
Q 027749 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDI----RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (219)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l 187 (219)
+||+|.++.+++-....++.+..-+|..-....- ..-..++||||+|.+.+-.+++.+ -++.+++.||+||+|.+
T Consensus 272 ALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL 350 (830)
T COG1202 272 ALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTL 350 (830)
T ss_pred HhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeec
Confidence 9999999999877777787776666544322211 111236899999999999999876 57899999999999988
Q ss_pred hccc---cHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 188 LSRG---FKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 188 ~~~~---~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
-+.. ..+-+...++.+-++.|.|.+|||+-.
T Consensus 351 ~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN 384 (830)
T COG1202 351 EDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN 384 (830)
T ss_pred cchhcccchhhHHHHHHHhCCCCeEEEEEeecCC
Confidence 8753 223345555666668999999999853
No 65
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.86 E-value=9.1e-21 Score=158.26 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=130.6
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEE
Q 027749 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (219)
-.++.+|.......+.+ |++|+.|||-|||..+.+-+..++...++ ++||++||+.|+.|..+.|.+......-.+.
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 46788898888777755 99999999999999888887777776644 7999999999999999999999877677788
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.|....+++...+ ...+|+|+||+.+.+-+..+.+++.++.++||||||+-...+-.-.+....-.-.+++.++++|
T Consensus 91 ~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLT 169 (542)
T COG1111 91 ALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLT 169 (542)
T ss_pred eecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEe
Confidence 888888777664444 5579999999999999999999999999999999999665543333333333335678999999
Q ss_pred ecccC
Q 027749 214 SCFLF 218 (219)
Q Consensus 214 ATl~~ 218 (219)
||.-.
T Consensus 170 ASPGs 174 (542)
T COG1111 170 ASPGS 174 (542)
T ss_pred cCCCC
Confidence 99643
No 66
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.86 E-value=6.4e-21 Score=166.87 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=133.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 027749 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (219)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (219)
+.....+...--....++.+|.+.+-..+ |+|+||++|||+|||+++...++.++..... .++||++|++.|+.|+..
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a 124 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIA 124 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHH
Confidence 44444444443344478999999998888 9999999999999999998888887776654 789999999999999997
Q ss_pred HHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCC-CCCccEEEeccchhhhcc-ccHHHHH
Q 027749 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLR-TRAIKLLVLDESDEMLSR-GFKDQIY 197 (219)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~-~~~l~~lVvDE~h~l~~~-~~~~~~~ 197 (219)
.+..++.. .++....|+.........+-...+|+|+||+.+.+.+.+...+ ++++.++||||||+-... .|..-++
T Consensus 125 ~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr 202 (746)
T KOG0354|consen 125 CFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMR 202 (746)
T ss_pred HHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHH
Confidence 66666654 4555555554433333355567899999999999988876544 489999999999997755 4666666
Q ss_pred HHHHhCCCCCeEEEEeeccc
Q 027749 198 DVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 198 ~i~~~~~~~~q~i~~SATl~ 217 (219)
.++..-....|+|++|||+.
T Consensus 203 ~~l~~k~~~~qILgLTASpG 222 (746)
T KOG0354|consen 203 EYLDLKNQGNQILGLTASPG 222 (746)
T ss_pred HHHHhhhccccEEEEecCCC
Confidence 77777655669999999975
No 67
>PRK13766 Hef nuclease; Provisional
Probab=99.85 E-value=3.7e-20 Score=169.19 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=127.9
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeE
Q 027749 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (219)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (219)
...|+++|..+...++.+ ++++++|||+|||.++++++...+. ..+.++||++|+++|+.|+.+.++++....+..+
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v 89 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKI 89 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceE
Confidence 347899999999888776 9999999999999999888877763 2346799999999999999999998765444566
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
..+.|+.+... ...+..+++|+|+||+.+...+..+.+.+.++++|||||||++........+........+.+++++|
T Consensus 90 ~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~l 168 (773)
T PRK13766 90 VVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGL 168 (773)
T ss_pred EEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEE
Confidence 66777666554 34445578999999999998877777888999999999999987654444455555555567789999
Q ss_pred eecc
Q 027749 213 GSCF 216 (219)
Q Consensus 213 SATl 216 (219)
|||.
T Consensus 169 TaTP 172 (773)
T PRK13766 169 TASP 172 (773)
T ss_pred EcCC
Confidence 9995
No 68
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.3e-20 Score=170.56 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=134.5
Q ss_pred HHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 48 IYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
-...+| .+.++|++++-.+..|.+++|+||||+|||++.-.++...+.... +++|+.|.++|.+|.++.+......
T Consensus 113 ~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q---rviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 113 AREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ---RVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred HHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC---ceEeccchhhhhhhHHHHHHHHhhh
Confidence 345666 799999999999999999999999999999988887766655543 3999999999999999999766544
Q ss_pred cceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCC
Q 027749 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (219)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~ 207 (219)
..-.+.++.|..+.+ .++.++|.|.+-|.+++..+...+.++.+||+||+|.|.+...+...+.++-.+|++.
T Consensus 189 v~~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 189 VADMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHV 261 (1041)
T ss_pred hhhhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCC
Confidence 322233444444443 3678999999999999999888899999999999999999988889999999999999
Q ss_pred eEEEEeecccC
Q 027749 208 QVCCPGSCFLF 218 (219)
Q Consensus 208 q~i~~SATl~~ 218 (219)
|+++||||+|.
T Consensus 262 ~~v~LSATv~N 272 (1041)
T COG4581 262 RFVFLSATVPN 272 (1041)
T ss_pred cEEEEeCCCCC
Confidence 99999999985
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.84 E-value=2.2e-20 Score=165.73 Aligned_cols=152 Identities=18% Similarity=0.077 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCCchhHH---------hHHHHHhhhcc---CCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSM---------IALTVCQTVDT---SSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~---------~~~~~~~~~~~---~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
-.+|.++++.+.++++++++|+||+|||.+ |+++.+..+.. ...+.++++++|++++|.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 347999999999999999999999999976 33444444321 334567999999999999999998775
Q ss_pred ccc---cceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHH
Q 027749 125 GDF---INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 201 (219)
Q Consensus 125 ~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~ 201 (219)
... .+..+...+|+.+. .......++.+|+|+|++. ....++++++||+||||.+...+ +.+..+++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~llk 315 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVAR 315 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHHH
Confidence 543 35667778888773 2222233467999999742 11247889999999999987664 45556665
Q ss_pred hCC-CCCeEEEEeecccC
Q 027749 202 YLP-PDLQVCCPGSCFLF 218 (219)
Q Consensus 202 ~~~-~~~q~i~~SATl~~ 218 (219)
... +..|+++||||++.
T Consensus 316 ~~~~~~rq~ILmSATl~~ 333 (675)
T PHA02653 316 KHIDKIRSLFLMTATLED 333 (675)
T ss_pred HhhhhcCEEEEEccCCcH
Confidence 543 34699999999975
No 70
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.84 E-value=6.2e-20 Score=166.47 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=116.2
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH-HhccccceeEEEEEC
Q 027749 59 IQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHACVG 137 (219)
Q Consensus 59 ~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~~~~ 137 (219)
+-.+.+..+.++++++++|+||||||.+|.+++++.... ..+++++.|++++|.|+.+.+. .+....+..+...++
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr 85 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEec
Confidence 334566667788999999999999999999999876432 2479999999999999999985 445556667776666
Q ss_pred CcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchh-hhcccc-HHHHHHHHHhCCCCCeEEEEeec
Q 027749 138 GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGF-KDQIYDVYRYLPPDLQVCCPGSC 215 (219)
Q Consensus 138 ~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~-l~~~~~-~~~~~~i~~~~~~~~q~i~~SAT 215 (219)
+.+... ...+|+|+||+.|.+++.+. ..++++++||+||+|. .++.++ ...+..+++.++++.|+++||||
T Consensus 86 ~~~~~~------~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSAT 158 (812)
T PRK11664 86 AESKVG------PNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred CccccC------CCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecC
Confidence 554322 34689999999999988764 4789999999999996 344332 23345667778889999999999
Q ss_pred ccC
Q 027749 216 FLF 218 (219)
Q Consensus 216 l~~ 218 (219)
++.
T Consensus 159 l~~ 161 (812)
T PRK11664 159 LDN 161 (812)
T ss_pred CCH
Confidence 974
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.84 E-value=6.6e-20 Score=153.33 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=108.8
Q ss_pred HHHHHHHHHhCCCc--EEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccc----ceeE
Q 027749 59 IQQRAVMPIIKGRD--VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI----NIQA 132 (219)
Q Consensus 59 ~Q~~~~~~~~~~~~--~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~----~~~~ 132 (219)
+|.++++.+.++.+ +++++|||+|||++|+++++.. ..+++|++|+++|++|+++.+.++.... +..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 48999999998864 7889999999999999998742 2358999999999999999998876432 4555
Q ss_pred EEEECCcccHH-HH-------------------HHhcCCCeEEEeChHHHHHHHHcCCC--------CCCCccEEEeccc
Q 027749 133 HACVGGKSVGE-DI-------------------RKLEHGVHVVSGTPGRVCDMIKRKTL--------RTRAIKLLVLDES 184 (219)
Q Consensus 133 ~~~~~~~~~~~-~~-------------------~~l~~~~~I~v~Tp~~l~~~l~~~~~--------~~~~l~~lVvDE~ 184 (219)
..+.|....+. .. ......+.|+++||+.|..++..... .+..+++||+||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 55555422110 00 01123678899999999877653211 2478999999999
Q ss_pred hhhhccc-----cHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 185 DEMLSRG-----FKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 185 h~l~~~~-----~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
|.+..+. +......+++......+++++|||+|+
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP 193 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH
Confidence 9866432 112333444444446799999999975
No 72
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.84 E-value=9.6e-20 Score=165.05 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=116.6
Q ss_pred HHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH-HhccccceeEEEEEC
Q 027749 59 IQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHACVG 137 (219)
Q Consensus 59 ~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~~~~~~ 137 (219)
+-.+.+..+.++.+++++|+||+|||.+|.+++++... .+.+++++.|++++|.|+.+++. .+....+..+...++
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr 82 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVR 82 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEc
Confidence 33456667778889999999999999999999988763 23579999999999999999985 444455555655554
Q ss_pred CcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchh-hhccccHH-HHHHHHHhCCCCCeEEEEeec
Q 027749 138 GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKD-QIYDVYRYLPPDLQVCCPGSC 215 (219)
Q Consensus 138 ~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~-l~~~~~~~-~~~~i~~~~~~~~q~i~~SAT 215 (219)
+.+ ....+.+|+|+||+.|++.+.+. ..++++++||+||+|. +++.++.. .+..+.+.++++.|+|+||||
T Consensus 83 ~~~------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 83 GEN------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred ccc------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 433 22345789999999999988764 4789999999999994 67665543 345566778889999999999
Q ss_pred ccC
Q 027749 216 FLF 218 (219)
Q Consensus 216 l~~ 218 (219)
++.
T Consensus 156 l~~ 158 (819)
T TIGR01970 156 LDG 158 (819)
T ss_pred CCH
Confidence 974
No 73
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.84 E-value=3.5e-19 Score=128.60 Aligned_cols=144 Identities=33% Similarity=0.473 Sum_probs=113.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcC
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (219)
+++++.+|||+|||..++..+...... ....+++|++|+..++.++.+.+...... +..+..+.+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 468999999999998888877776654 23457999999999999999999888765 5667777777666665555667
Q ss_pred CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 151 ~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
+.+|+++|++.+..............+++|+||+|.+....................+++++|||.
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 899999999999987776655567789999999999887654444333344456788999999995
No 74
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.83 E-value=1.2e-20 Score=154.98 Aligned_cols=116 Identities=31% Similarity=0.507 Sum_probs=103.4
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhcccc---ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccE
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFI---NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~ 178 (219)
|.++|+-|+++|++|.++.++++.... .++..++.|+.-.+.+...+..+.+|+|+||+++...+..+.+.+..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 569999999999999999777765443 45666888999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhccccHHHHHHHHHhCCC------CCeEEEEeeccc
Q 027749 179 LVLDESDEMLSRGFKDQIYDVYRYLPP------DLQVCCPGSCFL 217 (219)
Q Consensus 179 lVvDE~h~l~~~~~~~~~~~i~~~~~~------~~q~i~~SATl~ 217 (219)
+|+||+|.++..++.+.+.++..++|. ..|.+++|||++
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh 411 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLH 411 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEe
Confidence 999999999999999999999888864 579999999986
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.82 E-value=7e-19 Score=157.72 Aligned_cols=150 Identities=21% Similarity=0.246 Sum_probs=114.2
Q ss_pred CChHHHHHHHHHHhCC---CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccccee
Q 027749 55 KPSAIQQRAVMPIIKG---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~---~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (219)
.+++.|+++++.+.++ +++++.++||+|||.+|+.++...+.. +.++||++|+++|+.|+.+.+++.. +..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 5899999999999874 789999999999999998877666543 4579999999999999999998754 467
Q ss_pred EEEEECCcccHHHH---HHh-cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc-----c-HHHHHHHHH
Q 027749 132 AHACVGGKSVGEDI---RKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----F-KDQIYDVYR 201 (219)
Q Consensus 132 ~~~~~~~~~~~~~~---~~l-~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~-----~-~~~~~~i~~ 201 (219)
+..++|+.+..++. ..+ .+..+|+|+|+..+. ..++++++|||||+|...... | ...+ .+.+
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~r 289 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVR 289 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHH-HHHH
Confidence 77888887765443 333 346899999997653 457899999999999754321 1 1222 2334
Q ss_pred hCCCCCeEEEEeecccC
Q 027749 202 YLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 202 ~~~~~~q~i~~SATl~~ 218 (219)
....+.+++++|||.+.
T Consensus 290 a~~~~~~~il~SATps~ 306 (679)
T PRK05580 290 AKLENIPVVLGSATPSL 306 (679)
T ss_pred hhccCCCEEEEcCCCCH
Confidence 44568899999999764
No 76
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.81 E-value=1.1e-19 Score=152.30 Aligned_cols=142 Identities=15% Similarity=0.075 Sum_probs=99.1
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccH---------
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVG--------- 142 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 142 (219)
++++.+|||+|||.+|++++++.+.. ....+++|++|+++|+.|+.+.+..+... .+...+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 47999999999999999999987654 34568999999999999999999887432 222333322210
Q ss_pred ---HHHHHh------cCCCeEEEeChHHHHHHHHcCC----CCCC--CccEEEeccchhhhccccHHHHHHHHHhCC-CC
Q 027749 143 ---EDIRKL------EHGVHVVSGTPGRVCDMIKRKT----LRTR--AIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PD 206 (219)
Q Consensus 143 ---~~~~~l------~~~~~I~v~Tp~~l~~~l~~~~----~~~~--~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~-~~ 206 (219)
...... ....+|+|+||+++...+.... ..+. ..++||+||+|.+.+.++.. +..+++.++ .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 000011 1246799999999998766521 1111 23789999999988765333 566665554 47
Q ss_pred CeEEEEeecccC
Q 027749 207 LQVCCPGSCFLF 218 (219)
Q Consensus 207 ~q~i~~SATl~~ 218 (219)
.|++++|||+|.
T Consensus 156 ~~~i~~SATlp~ 167 (358)
T TIGR01587 156 VPILLMSATLPK 167 (358)
T ss_pred CCEEEEecCchH
Confidence 899999999973
No 77
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=5e-19 Score=152.98 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=127.1
Q ss_pred HHHH-HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 46 RGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 46 ~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
..|+ -+|+..+.+-|.++|..+++|+++++..|||+||++||.+|.+-. .+ -+|||.|..+|...+.+.++..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----~G-~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----EG-LTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----CC-CEEEECchHHHHHHHHHHHHHc
Confidence 4454 468999999999999999999999999999999999999998766 22 4999999999999988888776
Q ss_pred ccccceeEEEEECCcccHHHHHHh---c-CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc--cHHHHHH
Q 027749 125 GDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYD 198 (219)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~--~~~~~~~ 198 (219)
|+...++.+..+..+....+ . ...+++..+||++..--....+.-..+.++|||||||+.+|| |+..+.+
T Consensus 81 ----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 81 ----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred ----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH
Confidence 57777777776665543332 2 347999999999875322222224578899999999999996 8877665
Q ss_pred H---HHhCCCCCeEEEEeecccC
Q 027749 199 V---YRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 199 i---~~~~~~~~q~i~~SATl~~ 218 (219)
+ ...+| +..++.+|||-++
T Consensus 157 lg~l~~~~~-~~p~~AlTATA~~ 178 (590)
T COG0514 157 LGRLRAGLP-NPPVLALTATATP 178 (590)
T ss_pred HHHHHhhCC-CCCEEEEeCCCCh
Confidence 5 44455 7899999999765
No 78
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.78 E-value=7e-18 Score=127.94 Aligned_cols=153 Identities=18% Similarity=0.155 Sum_probs=102.3
Q ss_pred CChHHHHHHHHHHhC-------CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 55 KPSAIQQRAVMPIIK-------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~-------~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
+++++|.+++..+.. .+++++.+|||+|||.+++..+.+... +++|++|+..++.|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 578999999988773 588999999999999888754444433 6999999999999999999766543
Q ss_pred cceeEEE-----------EECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC-----------CCCCCccEEEeccch
Q 027749 128 INIQAHA-----------CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-----------LRTRAIKLLVLDESD 185 (219)
Q Consensus 128 ~~~~~~~-----------~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~-----------~~~~~l~~lVvDE~h 185 (219)
....... ................+.+++++|.+.+........ ......++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 2111100 111111112222334577899999999998765321 223467899999999
Q ss_pred hhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 186 EMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 186 ~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+..... ....+++ .+...+|+||||.++
T Consensus 157 ~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 157 HYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp CTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred hcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 876543 1444544 456779999999863
No 79
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.77 E-value=1.7e-18 Score=153.18 Aligned_cols=154 Identities=16% Similarity=0.181 Sum_probs=130.5
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
.+.| .+..+|++|+-++.+|.++.|.|+|.+|||+++-.++... ....-++||..|-++|.+|.++.+++.....+
T Consensus 293 ~~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala---q~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA---QKHMTRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred hCCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH---HhhccceEecchhhhhccchHHHHHHhccccc
Confidence 4455 7899999999999999999999999999998876654332 22345699999999999999999988766554
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeE
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~ 209 (219)
++.|..... ..+.++|+|.+-|..++.++.-.++++++||+||+|.+.+...+-.++.++-.+|++.++
T Consensus 369 ----LlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~ 437 (1248)
T KOG0947|consen 369 ----LLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNF 437 (1248)
T ss_pred ----eeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceE
Confidence 455554433 347899999999999999888778999999999999999988888899999999999999
Q ss_pred EEEeecccC
Q 027749 210 CCPGSCFLF 218 (219)
Q Consensus 210 i~~SATl~~ 218 (219)
|++|||+|.
T Consensus 438 IlLSATVPN 446 (1248)
T KOG0947|consen 438 ILLSATVPN 446 (1248)
T ss_pred EEEeccCCC
Confidence 999999985
No 80
>PRK09694 helicase Cas3; Provisional
Probab=99.76 E-value=7.3e-18 Score=153.22 Aligned_cols=164 Identities=13% Similarity=0.060 Sum_probs=113.5
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccc--ce
Q 027749 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI--NI 130 (219)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~--~~ 130 (219)
...|+|+|..+.........+++.+|||+|||.+++..+...+ ......+++|.+||+++++++++++.++.... ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~-~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLI-DQGLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHH-HhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3479999998855444456799999999999999877655433 33334579999999999999999997654322 34
Q ss_pred eEEEEECCcccHHHHH--------------------Hh----cC---CCeEEEeChHHHHHHHHc-CCCCCCCc----cE
Q 027749 131 QAHACVGGKSVGEDIR--------------------KL----EH---GVHVVSGTPGRVCDMIKR-KTLRTRAI----KL 178 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~--------------------~l----~~---~~~I~v~Tp~~l~~~l~~-~~~~~~~l----~~ 178 (219)
++.+.+|......... .+ .+ -.+|+|||.++++..... +...++.+ ++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 5666666544221110 11 11 268999999998864433 32223333 48
Q ss_pred EEeccchhhhccccHHHHHHHHHhCC-CCCeEEEEeecccC
Q 027749 179 LVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVCCPGSCFLF 218 (219)
Q Consensus 179 lVvDE~h~l~~~~~~~~~~~i~~~~~-~~~q~i~~SATl~~ 218 (219)
|||||+|.. +..+...+..+++.+. ....+|+||||+|.
T Consensus 443 vIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~ 482 (878)
T PRK09694 443 LIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPA 482 (878)
T ss_pred EEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCH
Confidence 999999974 5556667777777753 36789999999985
No 81
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.75 E-value=1.4e-17 Score=147.44 Aligned_cols=131 Identities=21% Similarity=0.314 Sum_probs=110.3
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.|. .|++.|....+.+..|+ +.+++||+|||+++.+|++...... ..+.|++||..||.|.++.+.++.+..++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G---~~V~VvTpt~~LA~qdae~~~~l~~~LGL 126 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTG---KGVHVVTVNDYLAQRDAEWMGQVYRFLGL 126 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhC---CCEEEEcCCHHHHHHHHHHHHHHhccCCC
Confidence 454 79999999988887775 9999999999999999996544442 34999999999999999999999999999
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHH-HHHHHcC------CCCCCCccEEEeccchhhhc
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~l~~ 189 (219)
++.++.|+.+..++... ..++|+++||++| .++++.+ ...++.+.++|+||+|.|+-
T Consensus 127 sv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 127 SVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred eEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 99999999886654433 3589999999999 7777655 34678899999999999875
No 82
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.73 E-value=8.9e-17 Score=143.10 Aligned_cols=130 Identities=17% Similarity=0.237 Sum_probs=99.2
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.|+++|......+.+| .+++++||+|||++|.+|++...... ..++|++|++.||.|..+.+..+....++++.+
T Consensus 70 rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g---~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~ 144 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTG---KGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSL 144 (762)
T ss_pred CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcC---CceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEE
Confidence 5666665555544444 69999999999999999987766543 359999999999999999999999999999888
Q ss_pred EECCcc---cHHHHHHhcCCCeEEEeChHHH-HHHHHc------CCCCCCCccEEEeccchhhhc
Q 027749 135 CVGGKS---VGEDIRKLEHGVHVVSGTPGRV-CDMIKR------KTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 135 ~~~~~~---~~~~~~~l~~~~~I~v~Tp~~l-~~~l~~------~~~~~~~l~~lVvDE~h~l~~ 189 (219)
.+++.. .....+....+|+|+++||++| .+.+.. ....++.+.++|+||||.|+-
T Consensus 145 ~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILi 209 (762)
T TIGR03714 145 GVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLL 209 (762)
T ss_pred EECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhh
Confidence 776521 2222334446899999999999 444422 234567899999999999864
No 83
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=7.5e-17 Score=144.58 Aligned_cols=131 Identities=16% Similarity=0.272 Sum_probs=108.3
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.|. .|+++|..+.+.+.+|+ +.++.||+|||+++.+|++..... +..+.|++||+.||.|.++.+..+....++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 455 89999999999888876 999999999999999999866664 456999999999999999999999999999
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHH-HHHHHcC------CCCCCCccEEEeccchhhh
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~l~ 188 (219)
++.++.|+.+...+.+ ...+++|+++||+.| .+++..+ ....+.+.++||||+|.|+
T Consensus 149 ~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 149 TVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred eEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999988433333 335799999999999 4444332 1345789999999999876
No 84
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=8.4e-17 Score=141.55 Aligned_cols=130 Identities=19% Similarity=0.327 Sum_probs=107.7
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.|. .|+++|..+++.++.|+ |.++.||+|||++|.+|++..... ++.++|++||++||.|.++.+.++....++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~lGl 173 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEALGL 173 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Confidence 344 79999999999999998 999999999999999999987654 467999999999999999999999999999
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHHH-HHHHcCC-------------------------CCCCCccEEEeccc
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRKT-------------------------LRTRAIKLLVLDES 184 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~-~~l~~~~-------------------------~~~~~l~~lVvDE~ 184 (219)
++.+++|+.+.. .+....+|+|+++|+..|- +++..+- .....+.+.||||+
T Consensus 174 sv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 174 TVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred EEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 999999997643 3455578999999999884 3443221 11245789999999
Q ss_pred hhhh
Q 027749 185 DEML 188 (219)
Q Consensus 185 h~l~ 188 (219)
|-++
T Consensus 252 DSiL 255 (656)
T PRK12898 252 DSVL 255 (656)
T ss_pred ccee
Confidence 9765
No 85
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.71 E-value=2.4e-16 Score=136.76 Aligned_cols=164 Identities=20% Similarity=0.246 Sum_probs=132.7
Q ss_pred CCCHHHHHHHH-HCCCCCChHHHHHHHHHHhCC------CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 39 GIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 39 ~l~~~~~~~l~-~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
+....+.+.+. ...| ++|..|++++..+..+ .+-+++|..|||||++++++++..+.. +.++..++||.
T Consensus 246 ~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~Q~ALMAPTE 321 (677)
T COG1200 246 PANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GYQAALMAPTE 321 (677)
T ss_pred CccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CCeeEEeccHH
Confidence 34555555554 5555 7999999999998744 367999999999999999998887766 45699999999
Q ss_pred HHHHHHHHHHHHhccccceeEEEEECCcccHHHHHH---hcC-CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhh
Q 027749 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---LEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (219)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~-~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l 187 (219)
-||+|.+..+.++....++++..+.|..+...+... +.+ ..+|+|+| ..+-+..+.++++.++|+||-|+
T Consensus 322 ILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQHR- 395 (677)
T COG1200 322 ILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQHR- 395 (677)
T ss_pred HHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEecccc-
Confidence 999999999999999999999999988776554333 333 58999999 55667778899999999999998
Q ss_pred hccccHHHHHHHHHhCCC-CCeEEEEeecc
Q 027749 188 LSRGFKDQIYDVYRYLPP-DLQVCCPGSCF 216 (219)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~-~~q~i~~SATl 216 (219)
|+-.-+..+..... .+.++.||||.
T Consensus 396 ----FGV~QR~~L~~KG~~~Ph~LvMTATP 421 (677)
T COG1200 396 ----FGVHQRLALREKGEQNPHVLVMTATP 421 (677)
T ss_pred ----ccHHHHHHHHHhCCCCCcEEEEeCCC
Confidence 45566666666666 67899999995
No 86
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.71 E-value=1.4e-16 Score=136.56 Aligned_cols=146 Identities=17% Similarity=0.195 Sum_probs=100.1
Q ss_pred CChHHHHHHHHHHhC----CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 55 KPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.++++|++++..+.+ ++..+++.|||+|||.+++..+. .+... +|||+|+.+|+.|+.+.+.+.....
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~~~~-----~Lvlv~~~~L~~Qw~~~~~~~~~~~-- 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-ELKRS-----TLVLVPTKELLDQWAEALKKFLLLN-- 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-HhcCC-----EEEEECcHHHHHHHHHHHHHhcCCc--
Confidence 689999999999887 88999999999999977665443 33222 9999999999999998777665432
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEE
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVC 210 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i 210 (219)
.....+|+...... +..|.|+|.+.+..............++||+||||++....+.. +.+.+.....++
T Consensus 108 ~~~g~~~~~~~~~~------~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~----~~~~~~~~~~~L 177 (442)
T COG1061 108 DEIGIYGGGEKELE------PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRR----ILELLSAAYPRL 177 (442)
T ss_pred cccceecCceeccC------CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHH----HHHhhhccccee
Confidence 12222333332211 13699999988876421122233478999999999988654333 333333222299
Q ss_pred EEeecccC
Q 027749 211 CPGSCFLF 218 (219)
Q Consensus 211 ~~SATl~~ 218 (219)
+||||.+.
T Consensus 178 GLTATp~R 185 (442)
T COG1061 178 GLTATPER 185 (442)
T ss_pred eeccCcee
Confidence 99999753
No 87
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=1e-16 Score=145.25 Aligned_cols=174 Identities=14% Similarity=0.216 Sum_probs=132.1
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCCchhHHhHHHHHhhhccCC--------CceeEEEEcC
Q 027749 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSS--------REVQALILSP 109 (219)
Q Consensus 39 ~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tG~GKT~~~~~~~~~~~~~~~--------~~~~~lil~P 109 (219)
+++.+-..++. |...++++|..+.+..+.+ .++++|||||+|||-.+++.+++.+.... ...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 35555555665 4456999999999998866 58999999999999999999999886532 2358999999
Q ss_pred CHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC--CCCCCccEEEeccchhh
Q 027749 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEM 187 (219)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~--~~~~~l~~lVvDE~h~l 187 (219)
..+|++.+...+.+.....++.|....|......+. -.+.+|+|+||+++--+-++.. -+.+-++++|+||.|.+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 999999999999999999999999999887754332 2368999999999755444322 22345789999999977
Q ss_pred hccccHHHHHHH----HHhC---CCCCeEEEEeecccC
Q 027749 188 LSRGFKDQIYDV----YRYL---PPDLQVCCPGSCFLF 218 (219)
Q Consensus 188 ~~~~~~~~~~~i----~~~~---~~~~q~i~~SATl~~ 218 (219)
-+. .+..++.+ ++.. ...++++++|||||.
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPN 486 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPN 486 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCc
Confidence 543 23444333 2222 347899999999995
No 88
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=3.5e-16 Score=140.57 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=105.2
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.|+++|...--.+..| -|..++||+|||++|.+|++..+... ..+.|++||+.||.|.++.+..+....++++.+
T Consensus 82 ~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G---~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~ 156 (896)
T PRK13104 82 RHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAISG---RGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGV 156 (896)
T ss_pred CcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhcC---CCEEEEcCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 6788885544444444 58899999999999999999877653 349999999999999999999999999999999
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHH-HHHHHcC-CCCC-----CCccEEEeccchhhhc
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK-TLRT-----RAIKLLVLDESDEMLS 189 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l-~~~l~~~-~~~~-----~~l~~lVvDE~h~l~~ 189 (219)
+.|+.+...+...+ .++|+++||+.| .+++..+ .+++ +.+.++||||||.|+-
T Consensus 157 i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI 216 (896)
T PRK13104 157 IYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI 216 (896)
T ss_pred EeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh
Confidence 99998877654443 689999999999 8888765 3334 5899999999998773
No 89
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=8.7e-16 Score=136.68 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=103.5
Q ss_pred CChHHHHHHHHHHh-CC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccccee
Q 027749 55 KPSAIQQRAVMPII-KG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~-~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (219)
.++|+|++++..+. +| ++.+++.|||+|||+..+..+.. +. .++|||||+..|+.|+.+.+.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l~-----k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-VK-----KSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-hC-----CCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 57999999998876 34 47899999999999887765443 21 349999999999999999999986543445
Q ss_pred EEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc--------CCCCCCCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~--------~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
+..+.|+... .......|+|+|++.+...... ..+.-...++||+||||++-. .....++..+
T Consensus 329 I~~~tg~~k~-----~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l 399 (732)
T TIGR00603 329 ICRFTSDAKE-----RFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIV 399 (732)
T ss_pred EEEEecCccc-----ccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhc
Confidence 5555554322 1123478999999876532211 112224678999999999754 3444566665
Q ss_pred CCCCeEEEEeecccC
Q 027749 204 PPDLQVCCPGSCFLF 218 (219)
Q Consensus 204 ~~~~q~i~~SATl~~ 218 (219)
+. ...++||||+-.
T Consensus 400 ~a-~~RLGLTATP~R 413 (732)
T TIGR00603 400 QA-HCKLGLTATLVR 413 (732)
T ss_pred Cc-CcEEEEeecCcc
Confidence 43 457999999864
No 90
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.67 E-value=5.9e-16 Score=127.32 Aligned_cols=166 Identities=16% Similarity=0.236 Sum_probs=117.0
Q ss_pred HHHHHHHH-CCCC-CChHHHHHHHHHHhCC-CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 027749 43 DLLRGIYQ-YGFE-KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (219)
Q Consensus 43 ~~~~~l~~-~~~~-~~~~~Q~~~~~~~~~~-~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (219)
.+..+|++ +|+. .-++.|..++..+..+ +|+.|+.|||+||++||.+|.+.. +.-.|++.|..+|..++.+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHH
Confidence 35556664 3443 3378999999998765 699999999999999999998754 2258999999999998888
Q ss_pred HHHHhccccceeEEEEECCcccHHHHHHh------cCCCeEEEeChHHHHH-----HHHcCCCCCCCccEEEeccchhhh
Q 027749 120 VILAIGDFINIQAHACVGGKSVGEDIRKL------EHGVHVVSGTPGRVCD-----MIKRKTLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~I~v~Tp~~l~~-----~l~~~~~~~~~l~~lVvDE~h~l~ 188 (219)
.+..+ .+.+..+.+..+..++.+.+ +-...++..||+.... ++. ....-..+.|+||||||+..
T Consensus 80 HL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEAHCVS 154 (641)
T KOG0352|consen 80 HLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEAHCVS 154 (641)
T ss_pred HHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechhhhHh
Confidence 88776 45555555555544432222 1256799999986542 222 22234568999999999999
Q ss_pred ccc--cHHHHHHH--HHhCCCCCeEEEEeecccCC
Q 027749 189 SRG--FKDQIYDV--YRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 189 ~~~--~~~~~~~i--~~~~~~~~q~i~~SATl~~~ 219 (219)
.|| |+.+..++ ++..-.+..-+.++||-+++
T Consensus 155 QWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~ 189 (641)
T KOG0352|consen 155 QWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAK 189 (641)
T ss_pred hhccccCcchhhhhhHHhhCCCCceEEeecccChh
Confidence 995 66665554 33333467789999997653
No 91
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=1.6e-16 Score=138.05 Aligned_cols=150 Identities=16% Similarity=0.210 Sum_probs=127.1
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.+.|+|..++..+-++.+++|.|.|.+|||.++-.++...+..+ .++||..|-++|.+|-++++..-.+..|+
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~EF~DVGL---- 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEEFKDVGL---- 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHHhcccce----
Confidence 56899999999999999999999999999999988887777664 35999999999999999999776555443
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEee
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGS 214 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 214 (219)
..|..+.+. ++.-+|.|.+-|..++.++.-..+.+.+||+||+|.|-+...+-.++.-+--+|++.+.+++||
T Consensus 202 MTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 445544433 4678999999999999988888899999999999999987656666666777899999999999
Q ss_pred cccC
Q 027749 215 CFLF 218 (219)
Q Consensus 215 Tl~~ 218 (219)
|+|.
T Consensus 275 TiPN 278 (1041)
T KOG0948|consen 275 TIPN 278 (1041)
T ss_pred cCCC
Confidence 9996
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=7.8e-16 Score=133.81 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=93.1
Q ss_pred EEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHH---HHHhc-
Q 027749 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLE- 149 (219)
Q Consensus 74 lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~- 149 (219)
++.|+||+|||.+|+..+.+.+.. +.++||++|+.+|+.|+.+.+++.. +..+..++++.+..++ +..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999999997665444433 3469999999999999999998754 4556677777665544 33332
Q ss_pred CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc-----cH-HHHHHHHHhCCCCCeEEEEeecccC
Q 027749 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----FK-DQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 150 ~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~-----~~-~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+.++|+|+|+..+. ..++++++|||||.|...... |. .++. +++....+.++|++|||.+.
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a-~~ra~~~~~~vil~SATPsl 141 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVA-VYRAKKFNCPVVLGSATPSL 141 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHH-HHHHHhcCCCEEEEeCCCCH
Confidence 45799999987553 357899999999999765322 11 2222 23333457899999999653
No 93
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=123.38 Aligned_cols=174 Identities=19% Similarity=0.224 Sum_probs=130.0
Q ss_pred CccccCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 33 TSFDAMGIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
..-+++|++....+.|+ .+.+++++|.|..+++....|++.++..|||.||++||.+|.+-. ...+++++|..
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~pli 144 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLI 144 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhH
Confidence 45567899999998887 567889999999999999999999999999999999999987642 34699999999
Q ss_pred HHHHHHHHHHHHhccccceeEEEEECCcccHHHHH---Hh---cCCCeEEEeChHHHHH---HHH--cCCCCCCCccEEE
Q 027749 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KL---EHGVHVVSGTPGRVCD---MIK--RKTLRTRAIKLLV 180 (219)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l---~~~~~I~v~Tp~~l~~---~l~--~~~~~~~~l~~lV 180 (219)
+|++.+.-.++.+ ++....+..+.+.++..+ .+ .....++..||+++.. ++. .+.+....+++|-
T Consensus 145 slmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~ia 220 (695)
T KOG0353|consen 145 SLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIA 220 (695)
T ss_pred HHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEe
Confidence 9999877777776 444444443333332211 11 2246789999999875 222 2446678899999
Q ss_pred eccchhhhccc--cHHHHH---HHHHhCCCCCeEEEEeeccc
Q 027749 181 LDESDEMLSRG--FKDQIY---DVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 181 vDE~h~l~~~~--~~~~~~---~i~~~~~~~~q~i~~SATl~ 217 (219)
+||+|+-..|| |+.+.. -+.+++ ++..+|+++||-+
T Consensus 221 idevhccsqwghdfr~dy~~l~ilkrqf-~~~~iigltatat 261 (695)
T KOG0353|consen 221 IDEVHCCSQWGHDFRPDYKALGILKRQF-KGAPIIGLTATAT 261 (695)
T ss_pred ecceeehhhhCcccCcchHHHHHHHHhC-CCCceeeeehhhh
Confidence 99999988885 555543 334444 4678999999864
No 94
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.64 E-value=3.1e-15 Score=139.58 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=106.3
Q ss_pred CChHHHHHHHHHHh----CC-CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 55 KPSAIQQRAVMPII----KG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~-~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
.++++|.+++..+. +| ++.+++++||+|||.+++. ++..+.......++|||+|+.+|+.|..+.+..+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 58999999997764 33 6799999999999977544 445454444456899999999999999999987643222
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcC-----CCCCCCccEEEeccchhhhcc--------------
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----TLRTRAIKLLVLDESDEMLSR-------------- 190 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~-----~~~~~~l~~lVvDE~h~l~~~-------------- 190 (219)
......++...... ........|+|+|.++|...+... ...+.++++||+||||+-...
T Consensus 492 ~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 11111111111011 011235789999999998765321 235678899999999985310
Q ss_pred -ccHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 191 -GFKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 191 -~~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
.+...+..+++.+. .-.|+||||.-
T Consensus 570 ~~~~~~yr~iL~yFd--A~~IGLTATP~ 595 (1123)
T PRK11448 570 LDYVSKYRRVLDYFD--AVKIGLTATPA 595 (1123)
T ss_pred hhHHHHHHHHHhhcC--ccEEEEecCCc
Confidence 12356777777663 46899999963
No 95
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.64 E-value=5.6e-15 Score=137.77 Aligned_cols=147 Identities=18% Similarity=0.241 Sum_probs=95.2
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHH-HHhhhccCCCceeEEEEcCC----HHHHHHHHHHHHH-hccccce
Q 027749 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALT-VCQTVDTSSREVQALILSPT----RELATQTEKVILA-IGDFINI 130 (219)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~-~~~~~~~~~~~~~~lil~P~----~~l~~q~~~~~~~-~~~~~~~ 130 (219)
+....+.+..+..+..++|+|+||||||. .+| ++.... ......+++.-|. +++|.++.+++.. ++...|+
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g-~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG-RGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC-CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 44445566666677778899999999996 455 333222 2112234445575 4666666666653 3443343
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccch-hhhccccHHH-HHHHHHhCCCCCe
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD-EMLSRGFKDQ-IYDVYRYLPPDLQ 208 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h-~l~~~~~~~~-~~~i~~~~~~~~q 208 (219)
.+. ..+ ....++.|+|+||+.|++.+.... .++++++||+|||| ++++.+|... +..++.. .++.|
T Consensus 153 ~vr----f~~------~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpdlK 220 (1294)
T PRK11131 153 KVR----FND------QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPDLK 220 (1294)
T ss_pred eec----Ccc------ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhc-CCCce
Confidence 321 111 113468999999999999887654 48999999999999 5777776643 3333332 24789
Q ss_pred EEEEeecccC
Q 027749 209 VCCPGSCFLF 218 (219)
Q Consensus 209 ~i~~SATl~~ 218 (219)
+|+||||++.
T Consensus 221 vILmSATid~ 230 (1294)
T PRK11131 221 VIITSATIDP 230 (1294)
T ss_pred EEEeeCCCCH
Confidence 9999999974
No 96
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.63 E-value=1.6e-15 Score=138.18 Aligned_cols=164 Identities=18% Similarity=0.208 Sum_probs=123.3
Q ss_pred HHHHHH-HHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 027749 43 DLLRGI-YQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (219)
Q Consensus 43 ~~~~~l-~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (219)
.....+ ..+|...+.+-|.+++...+.|++++|..|||.||++||.+|++-. ++-.|+|.|..+|.+.+...+
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhh
Confidence 344444 4779999999999999999999999999999999999999987553 236999999999998777766
Q ss_pred HHhccccceeEEEEECCcccHHHH---HHhcC---CCeEEEeChHHHHHH--HHcCCCCCCC---ccEEEeccchhhhcc
Q 027749 122 LAIGDFINIQAHACVGGKSVGEDI---RKLEH---GVHVVSGTPGRVCDM--IKRKTLRTRA---IKLLVLDESDEMLSR 190 (219)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~---~~~I~v~Tp~~l~~~--l~~~~~~~~~---l~~lVvDE~h~l~~~ 190 (219)
.+ .++....+.++....++. ..+.. .++|+..||+++... +......+.. +.++|+||||+...|
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 33 367777787777765443 22322 578999999988752 2222223333 789999999999999
Q ss_pred c--cHHHHHHH---HHhCCCCCeEEEEeeccc
Q 027749 191 G--FKDQIYDV---YRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 191 ~--~~~~~~~i---~~~~~~~~q~i~~SATl~ 217 (219)
+ |+....++ ....+ ...+|.+|||-+
T Consensus 401 gHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT 431 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFP-GVPFIALTATAT 431 (941)
T ss_pred cccccHHHHHHHHHHhhCC-CCCeEEeehhcc
Confidence 5 77666655 33333 478999999975
No 97
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.61 E-value=2.1e-14 Score=131.02 Aligned_cols=164 Identities=19% Similarity=0.208 Sum_probs=130.7
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHhC----C--CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 39 GIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIK----G--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 39 ~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~----~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
+-+......+.. +.| .-|+.|..||..+.+ + .|-+|||-.|-|||.+++-++...+... .++.++|||.
T Consensus 578 ~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G---KQVAvLVPTT 653 (1139)
T COG1197 578 PPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG---KQVAVLVPTT 653 (1139)
T ss_pred CCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC---CeEEEEcccH
Confidence 344555555553 344 569999999998874 3 4889999999999999988887776654 5699999999
Q ss_pred HHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh---c-CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhh
Q 027749 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (219)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l 187 (219)
-||+|.++.+++.+...++++..+..-.+..++...+ . +..||+||| .-+.++.+.+++++++||||-|+
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqR- 727 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQR- 727 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhh-
Confidence 9999999999999999999999887666665554333 2 368999999 44456778899999999999998
Q ss_pred hccccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 188 LSRGFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
|+-.-+.-++.+..+.-++-+|||.
T Consensus 728 ----FGVk~KEkLK~Lr~~VDvLTLSATP 752 (1139)
T COG1197 728 ----FGVKHKEKLKELRANVDVLTLSATP 752 (1139)
T ss_pred ----cCccHHHHHHHHhccCcEEEeeCCC
Confidence 4555667777778888999999995
No 98
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.60 E-value=3.8e-15 Score=132.62 Aligned_cols=159 Identities=13% Similarity=0.098 Sum_probs=120.6
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhc-cccceeEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG-DFINIQAH 133 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~-~~~~~~~~ 133 (219)
.|..||.+.+..+-.+.+.+|+|||.+|||++- ..++....+.....-+|+++|+.+|++|+...+.... ...-.+..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 688999999999999999999999999999443 4455655555555679999999999999998886655 22223334
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc---CCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEE
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR---KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVC 210 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~---~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i 210 (219)
.+.|..+.+.+.. ...|+|+|+-|+.+..++.. ..-+..+++++|+||+|.+.+..-....+.++-.. .|.++
T Consensus 590 sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 4445545444332 34799999999999998877 45678999999999999988765444455555444 47899
Q ss_pred EEeecccC
Q 027749 211 CPGSCFLF 218 (219)
Q Consensus 211 ~~SATl~~ 218 (219)
++|||+-+
T Consensus 666 ~LSATigN 673 (1330)
T KOG0949|consen 666 VLSATIGN 673 (1330)
T ss_pred EEecccCC
Confidence 99999854
No 99
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=2e-14 Score=129.05 Aligned_cols=130 Identities=20% Similarity=0.302 Sum_probs=106.1
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.|. .|+++|....-.+.+| -+..+.||+|||+++.+|++....... .+-|++|+..||.|.++.+..+....++
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~G~---~V~IvTpn~yLA~rd~e~~~~l~~~LGl 151 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALTGK---GVHVVTVNDYLAKRDAEWMGPLYEFLGL 151 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 444 7899997766555555 489999999999999999975444332 3679999999999999999999999999
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHH-HHHHHcCC------CCCCCccEEEeccchhhh
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTRAIKLLVLDESDEML 188 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l-~~~l~~~~------~~~~~l~~lVvDE~h~l~ 188 (219)
++.++.|+.+..++...+ .++|+++||+.| .++++.+. ...+.+.++||||||.|+
T Consensus 152 sv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 152 SVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred eEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 999999988887765554 589999999999 77876543 235778999999999876
No 100
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.58 E-value=4.5e-14 Score=132.10 Aligned_cols=148 Identities=16% Similarity=0.077 Sum_probs=99.5
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhc-cccceeEEEEECCc
Q 027749 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG-DFINIQAHACVGGK 139 (219)
Q Consensus 61 ~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~ 139 (219)
.+.+..+.++..++|+|+||||||.. +|.+-.-.......++++.-|.+..|..+...+.+.. ...|-.+.+.+...
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 34555666677889999999999963 3433222222223356777899998888887775443 33333333322222
Q ss_pred ccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccch-hhhccccHHH-HHHHHHhCCCCCeEEEEeeccc
Q 027749 140 SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD-EMLSRGFKDQ-IYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 140 ~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h-~l~~~~~~~~-~~~i~~~~~~~~q~i~~SATl~ 217 (219)
+. ...+..|.|+|++.|+..+.+.. .++++++||+||+| ++++.+|... +..++... ++.|+|+||||++
T Consensus 151 ~~------~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld 222 (1283)
T TIGR01967 151 DQ------VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATID 222 (1283)
T ss_pred cc------cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcC
Confidence 21 12457899999999999887654 48999999999999 5887776654 55665443 5789999999986
Q ss_pred C
Q 027749 218 F 218 (219)
Q Consensus 218 ~ 218 (219)
.
T Consensus 223 ~ 223 (1283)
T TIGR01967 223 P 223 (1283)
T ss_pred H
Confidence 4
No 101
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.56 E-value=5.2e-14 Score=126.35 Aligned_cols=151 Identities=17% Similarity=0.145 Sum_probs=99.6
Q ss_pred CChHHHHHHHHHHh----C------CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 55 KPSAIQQRAVMPII----K------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----~------~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
-+.++|.+++..+. + .+..+++.+||||||+.++..+...+ .....+++|||+|+.+|..|+.+.+..+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 47889999997753 2 25799999999999977766543333 4445678999999999999999999887
Q ss_pred ccccceeEEEEECCcccHHHHHHhc-CCCeEEEeChHHHHHHHHcC--CCCCCCc-cEEEeccchhhhccccHHHHHHHH
Q 027749 125 GDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK--TLRTRAI-KLLVLDESDEMLSRGFKDQIYDVY 200 (219)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~I~v~Tp~~l~~~l~~~--~~~~~~l-~~lVvDE~h~l~~~~~~~~~~~i~ 200 (219)
.... + .+..+.......+. .+..|+|+|.++|...+... .....+- -+||+||||+..... +...+
T Consensus 317 ~~~~-~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~----~~~~l 386 (667)
T TIGR00348 317 QKDC-A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGE----LAKNL 386 (667)
T ss_pred CCCC-C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchH----HHHHH
Confidence 5321 0 11122222223332 24689999999998644321 1111111 279999999865332 33333
Q ss_pred -HhCCCCCeEEEEeeccc
Q 027749 201 -RYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 201 -~~~~~~~q~i~~SATl~ 217 (219)
+.+| +...++||||.-
T Consensus 387 ~~~~p-~a~~lGfTaTP~ 403 (667)
T TIGR00348 387 KKALK-NASFFGFTGTPI 403 (667)
T ss_pred HhhCC-CCcEEEEeCCCc
Confidence 3444 468999999973
No 102
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.54 E-value=2.4e-13 Score=125.38 Aligned_cols=95 Identities=22% Similarity=0.236 Sum_probs=71.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHH----HHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHH
Q 027749 40 IKDDLLRGIYQYGFEKPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (219)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~----~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 115 (219)
+++...+.+...|+. +++.|.+.+. .+.+++++++.||||+|||++|++|++..+. . +.+++|.+||++|..
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~--~~~vvi~t~t~~Lq~ 306 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T--EKPVVISTNTKVLQS 306 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C--CCeEEEEeCcHHHHH
Confidence 444666777777885 7899998666 4557889999999999999999999988766 2 346999999999999
Q ss_pred HHHH-HHHHhccccc--eeEEEEECC
Q 027749 116 QTEK-VILAIGDFIN--IQAHACVGG 138 (219)
Q Consensus 116 q~~~-~~~~~~~~~~--~~~~~~~~~ 138 (219)
|+.. .+..+.+..+ +++..+.|+
T Consensus 307 Ql~~~~~~~l~~~~~~~~~~~~~kG~ 332 (850)
T TIGR01407 307 QLLEKDIPLLNEILNFKINAALIKGK 332 (850)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEcc
Confidence 9865 4544443333 555555544
No 103
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.51 E-value=5.6e-14 Score=125.22 Aligned_cols=165 Identities=13% Similarity=0.128 Sum_probs=131.2
Q ss_pred HHHCCCCCChHHHHHHH--HHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 48 IYQYGFEKPSAIQQRAV--MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 48 l~~~~~~~~~~~Q~~~~--~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
++..|..+.+.||.+++ +.++.++|.+...||+.|||++.-+-++......+. .++++.|..+.+.+-.+.+..+.
T Consensus 216 ~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vsiv~Ek~~~l~~~~ 293 (1008)
T KOG0950|consen 216 AKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVSIVQEKISALSPFS 293 (1008)
T ss_pred HHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceeehhHHHHhhhhhhc
Confidence 34667888999999988 567788999999999999999999888887765533 49999999999999999999999
Q ss_pred cccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc--CCCCCCCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 126 DFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~--~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
...|+.+....|........ +.-.+.|+|-++-..+++. ..-.+..+++|||||.|.+.+.+.+..++.++...
T Consensus 294 ~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~ 369 (1008)
T KOG0950|consen 294 IDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKI 369 (1008)
T ss_pred cccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHH
Confidence 99999999888777765443 3458999999987765543 22346789999999999999887665555555442
Q ss_pred -----CCCCeEEEEeecccC
Q 027749 204 -----PPDLQVCCPGSCFLF 218 (219)
Q Consensus 204 -----~~~~q~i~~SATl~~ 218 (219)
....|+|++|||+|.
T Consensus 370 ~y~~~~~~~~iIGMSATi~N 389 (1008)
T KOG0950|consen 370 LYENLETSVQIIGMSATIPN 389 (1008)
T ss_pred HHhccccceeEeeeecccCC
Confidence 234679999999985
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=1.8e-13 Score=123.14 Aligned_cols=131 Identities=19% Similarity=0.275 Sum_probs=104.3
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.|. .|+++|...--.+.+ .-|.+++||.|||+++.+|++..+..... +.||+|+..||.+..+.+..+....++
T Consensus 79 lgm-~~ydVQliGgl~L~~--G~IaEm~TGEGKTL~a~lp~~l~al~g~~---VhIvT~ndyLA~RD~e~m~~l~~~lGl 152 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVLDS--NRIAEMRTGEGKTLTATLPAYLNALTGKG---VHVITVNDYLARRDAENNRPLFEFLGL 152 (908)
T ss_pred hCC-CcCchHHhcchHhcC--CccccccCCCCchHHHHHHHHHHHhcCCC---EEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 344 678888554433433 45889999999999999999887765433 999999999999999999999999999
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHH-HHHHHcC-CCCC-----CCccEEEeccchhhhc
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK-TLRT-----RAIKLLVLDESDEMLS 189 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l-~~~l~~~-~~~~-----~~l~~lVvDE~h~l~~ 189 (219)
++.++.++.+.... .-..+|+|+++||+.| .++++.+ .... ..+.+.||||+|.++-
T Consensus 153 sv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 153 TVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred eEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 99999888776443 2234799999999999 7777665 3333 6788999999998774
No 105
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.48 E-value=2.6e-12 Score=115.57 Aligned_cols=138 Identities=14% Similarity=0.196 Sum_probs=97.4
Q ss_pred HHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 48 IYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
+.+.....||..|+.....+.+|+++-+.||||.|||..-++..+. +... +.++++++||..|+.|+++.+.++...
T Consensus 75 F~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~-~a~k--gkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 75 FKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY-LAKK--GKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred HHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH-HHhc--CCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 3333334899999988899999999999999999999443333332 2222 357999999999999999999999876
Q ss_pred cc-eeEEE-EECCcccHH---HHHHh-cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 128 IN-IQAHA-CVGGKSVGE---DIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 128 ~~-~~~~~-~~~~~~~~~---~~~~l-~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
.+ ..+.. .++..+..+ ....+ .++.+|+|+|.+-|......-. -.++++|+||++|.++..
T Consensus 152 ~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~--~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 152 AGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELS--KLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred cCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhc--ccCCCEEEEccHHHHHhc
Confidence 65 33333 444433322 22333 3479999999877665544311 146889999999987753
No 106
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.43 E-value=3.1e-12 Score=113.07 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=50.9
Q ss_pred HHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 65 MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 65 ~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
..+.+++.++++++||+|||++|++|++..+... .+.++||.+||++|+.|+.+.+..+.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 4455778899999999999999999998877532 24679999999999999999888776
No 107
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.42 E-value=7e-12 Score=113.38 Aligned_cols=173 Identities=13% Similarity=0.110 Sum_probs=122.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 027749 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (219)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (219)
.++...+.+....-...+..+...+..+.+...+++.|.||+|||.-..-.++.....++...++++.-|++--|..+.+
T Consensus 158 ~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAe 237 (924)
T KOG0920|consen 158 KSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAE 237 (924)
T ss_pred hhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHH
Confidence 33444444443333456778888899999999999999999999977777777777666677789999999999999988
Q ss_pred HHH-HhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhh-ccccHHHHH
Q 027749 120 VIL-AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIY 197 (219)
Q Consensus 120 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~-~~~~~~~~~ 197 (219)
++. +.+...+-.+....+..+... ....+.+||.+.|++.+.. .-.+..+..||+||+|.=. +.+|...+.
T Consensus 238 RVa~ER~~~~g~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~l 310 (924)
T KOG0920|consen 238 RVAKERGESLGEEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILL 310 (924)
T ss_pred HHHHHhccccCCeeeEEEeeecccC------CceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHH
Confidence 883 333444444444433333221 2367999999999998876 4457899999999999522 223444444
Q ss_pred HHHHhCCCCCeEEEEeecccCC
Q 027749 198 DVYRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 198 ~i~~~~~~~~q~i~~SATl~~~ 219 (219)
+.+-...++.++|+||||+..|
T Consensus 311 k~lL~~~p~LkvILMSAT~dae 332 (924)
T KOG0920|consen 311 KDLLPRNPDLKVILMSATLDAE 332 (924)
T ss_pred HHHhhhCCCceEEEeeeecchH
Confidence 4444446799999999998753
No 108
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.41 E-value=4.5e-12 Score=116.03 Aligned_cols=84 Identities=24% Similarity=0.313 Sum_probs=65.0
Q ss_pred CCCCCChHHHHHHHHH----HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHH-HHHHHHhc
Q 027749 51 YGFEKPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT-EKVILAIG 125 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~----~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~-~~~~~~~~ 125 (219)
.|+ .+++-|.+.... +..++.++++|+||+|||++|++|++... .+.++||.+||++|++|+ .+.+..+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 345 688999985544 34677899999999999999999988754 245799999999999999 46677776
Q ss_pred cccceeEEEEECCc
Q 027749 126 DFINIQAHACVGGK 139 (219)
Q Consensus 126 ~~~~~~~~~~~~~~ 139 (219)
+..++++..+.|+.
T Consensus 317 ~~~~~~~~~~kg~~ 330 (820)
T PRK07246 317 EVFHIDCHSLKGPQ 330 (820)
T ss_pred HhcCCcEEEEECCc
Confidence 66666666666543
No 109
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.40 E-value=5.6e-12 Score=102.78 Aligned_cols=138 Identities=16% Similarity=0.111 Sum_probs=85.7
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCc---eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE---VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~---~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (219)
..+..+++..+|.|||...+..+ ..+...... ..+|||+|. .+..++.+++.++......++....|........
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~-~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALI-SYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHH-HHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhh-hhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 34578999999999996665544 333322221 249999999 8889999999999865456666666555222222
Q ss_pred HHhcCCCeEEEeChHHHH--------HHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 146 RKLEHGVHVVSGTPGRVC--------DMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 146 ~~l~~~~~I~v~Tp~~l~--------~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
.......+++|+|.+.+. ..+.. -+.++||+||+|.+-+. .......+..+. ...++++|||.
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLKNK--DSKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGTTT--TSHHHHHHHCCC-ECEEEEE-SS-
T ss_pred ccccccceeeecccccccccccccccccccc-----ccceeEEEecccccccc--cccccccccccc-cceEEeecccc
Confidence 333456889999999888 22222 23788999999998543 334444444455 56789999995
No 110
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.38 E-value=3.2e-12 Score=91.73 Aligned_cols=133 Identities=14% Similarity=0.164 Sum_probs=82.8
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (219)
+|+-.++...+|+|||.-.+.-++...... +.++|+|.||+.++..+.+.++.. .+++....-. ...
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~-------~~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARM-------RTH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS----------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcC----CcccCceeee-------ccc
Confidence 455678999999999987777776655554 456999999999999988887543 3333211100 011
Q ss_pred cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc--cHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 149 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~--~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
..+.-|-|+|...+.+.+.+ .....+.++||+||+|..-... +...+...-. . ....+|++|||-|
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~-g~~~~i~mTATPP 137 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE-S-GEAKVIFMTATPP 137 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH-T-TS-EEEEEESS-T
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh-c-cCeeEEEEeCCCC
Confidence 23556788999998887665 4557889999999999743222 2333333322 1 3468999999987
No 111
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.37 E-value=1.2e-11 Score=99.60 Aligned_cols=145 Identities=17% Similarity=0.109 Sum_probs=106.8
Q ss_pred CChHHHHHHHHHH----hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 55 KPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 55 ~~~~~Q~~~~~~~----~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
++++.|+.+-..+ .+.++++|+|.||+|||.. +...++....+ +.++.+..|+...+.+++.+++.-.. +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~--G~~vciASPRvDVclEl~~Rlk~aF~--~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ--GGRVCIASPRVDVCLELYPRLKQAFS--NC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc--CCeEEEecCcccchHHHHHHHHHhhc--cC
Confidence 6788898877654 4668999999999999954 45555655554 45699999999999999999987654 46
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEE
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVC 210 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i 210 (219)
.+.+++|+.....+ ..++|+|...|++.- +.++++|+||+|.+--..-...-..+.+...++..+|
T Consensus 172 ~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 77778877765432 689999998887653 4578999999997543322233334444455677899
Q ss_pred EEeecccC
Q 027749 211 CPGSCFLF 218 (219)
Q Consensus 211 ~~SATl~~ 218 (219)
.+|||-+.
T Consensus 238 ylTATp~k 245 (441)
T COG4098 238 YLTATPTK 245 (441)
T ss_pred EEecCChH
Confidence 99999873
No 112
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.37 E-value=3.3e-12 Score=115.98 Aligned_cols=164 Identities=13% Similarity=0.131 Sum_probs=107.4
Q ss_pred CChHHHHHHHHHHhCC---C-cEEEEcCCCCchhHHhHHHHHhhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 55 KPSAIQQRAVMPIIKG---R-DVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~---~-~~lv~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
...+.|..++..+.+. . .+++.+|||.|||.+.+.+....+.. .....+++++.|++.+++++++++.++....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 4588999999887643 3 68899999999999999988887766 45678999999999999999999998766554
Q ss_pred eeEEEEECCcccHHHHHH-----h---------cCCCeEEEeChHHHHHHHHcC-CCC-CC--CccEEEeccchhhhccc
Q 027749 130 IQAHACVGGKSVGEDIRK-----L---------EHGVHVVSGTPGRVCDMIKRK-TLR-TR--AIKLLVLDESDEMLSRG 191 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~-----l---------~~~~~I~v~Tp~~l~~~l~~~-~~~-~~--~l~~lVvDE~h~l~~~~ 191 (219)
+.....+|.......... . .....+.++||.......... ... +. ....+|+||+|.+.+..
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 433322322221111000 0 002345566665555422211 111 11 12579999999877663
Q ss_pred cHHHHHHHHHhCC-CCCeEEEEeecccC
Q 027749 192 FKDQIYDVYRYLP-PDLQVCCPGSCFLF 218 (219)
Q Consensus 192 ~~~~~~~i~~~~~-~~~q~i~~SATl~~ 218 (219)
....+..++..+. .+..+|++|||+|+
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~ 382 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPP 382 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCH
Confidence 3444444444442 36789999999996
No 113
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.36 E-value=1.5e-11 Score=100.14 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=57.1
Q ss_pred CChHHHHHHH----HHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCC---ceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 55 KPSAIQQRAV----MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 55 ~~~~~Q~~~~----~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~---~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
.|+|.|.+.+ ..+..|+++++.+|||+|||++++.|++..+...+. +.+++|.++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4699999954 445678899999999999999999999877654333 247999999999998887777665
No 114
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.36 E-value=1.5e-11 Score=100.14 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=57.1
Q ss_pred CChHHHHHHH----HHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCC---ceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 55 KPSAIQQRAV----MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 55 ~~~~~Q~~~~----~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~---~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
.|+|.|.+.+ ..+..|+++++.+|||+|||++++.|++..+...+. +.+++|.++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4699999954 445678899999999999999999999877654333 247999999999998887777665
No 115
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.35 E-value=1.2e-11 Score=110.36 Aligned_cols=151 Identities=21% Similarity=0.210 Sum_probs=110.4
Q ss_pred CChHHHHHHHHHHhCC----CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 55 KPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~----~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.+++-|..++..+... +..++.|.||||||.+|+-.+-..+... ..+|+++|-.+|-.|+.++++... +.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rF---g~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARF---GA 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHh---CC
Confidence 5678899999888655 6799999999999999988766666553 459999999999999999998765 36
Q ss_pred eEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc-----cccHHHHHHHHH
Q 027749 131 QAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-----RGFKDQIYDVYR 201 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~-----~~~~~~~~~i~~ 201 (219)
++..++++.+..++...+ .+...|+|||--. -...++++++|||||-|.-.- +.|...=..+++
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA-------lF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA-------LFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-------hcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 666677777765554333 3578999999311 124679999999999996331 112222233344
Q ss_pred hCCCCCeEEEEeecccC
Q 027749 202 YLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 202 ~~~~~~q~i~~SATl~~ 218 (219)
.-..++++|+-|||-+-
T Consensus 345 a~~~~~pvvLgSATPSL 361 (730)
T COG1198 345 AKKENAPVVLGSATPSL 361 (730)
T ss_pred HHHhCCCEEEecCCCCH
Confidence 43457899999999764
No 116
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.35 E-value=1.9e-11 Score=110.64 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=108.8
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh-ccccceeEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI-GDFINIQAH 133 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~-~~~~~~~~~ 133 (219)
.-+....+.+..+.+..-++|+|+||+|||...-..+++.-. ..+..+.++=|++--|..+.+++.+- ....|-.|.
T Consensus 50 Pv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 50 PVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred CcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 445666667777788888999999999999665555555444 23446889999998888888888444 333343333
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchh-hhcccc-HHHHHHHHHhCCCCCeEEE
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGF-KDQIYDVYRYLPPDLQVCC 211 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~-l~~~~~-~~~~~~i~~~~~~~~q~i~ 211 (219)
+.+...+. ...+..|-+.|.+.|+..+.+... ++.+++||+||+|. .++..+ ...+..++...+.+..+|+
T Consensus 128 Y~iRfe~~------~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 128 YSIRFESK------VSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred EEEEeecc------CCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 33222221 123468999999999998876653 89999999999995 222222 3445666777777899999
Q ss_pred EeecccC
Q 027749 212 PGSCFLF 218 (219)
Q Consensus 212 ~SATl~~ 218 (219)
+|||+..
T Consensus 201 mSATld~ 207 (845)
T COG1643 201 MSATLDA 207 (845)
T ss_pred EecccCH
Confidence 9999865
No 117
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.34 E-value=7e-12 Score=110.96 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=106.5
Q ss_pred CCChHHHHHHHHHH----hCCC-cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccc
Q 027749 54 EKPSAIQQRAVMPI----IKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~----~~~~-~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (219)
..|+++|..|+..+ .+|+ .+++++.||+|||..+ +.++.++.+.+...++|||+-+++|+.|.+..+..+....
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 36899999999765 3453 5999999999999665 4577888877777889999999999999999988876553
Q ss_pred ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcC-----CCCCCCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~-----~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
. ....+.+... ...++|.|+|..++...+.+. .+....+++||+||||+-+ ....+.|+.++
T Consensus 243 ~-~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~I~dYF 309 (875)
T COG4096 243 T-KMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSSILDYF 309 (875)
T ss_pred c-ceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHHHHHHH
Confidence 2 2222211111 115899999999999887765 3455678999999999844 33344666665
Q ss_pred CCCCeEEEEeecccC
Q 027749 204 PPDLQVCCPGSCFLF 218 (219)
Q Consensus 204 ~~~~q~i~~SATl~~ 218 (219)
..- .++++||...
T Consensus 310 dA~--~~gLTATP~~ 322 (875)
T COG4096 310 DAA--TQGLTATPKE 322 (875)
T ss_pred HHH--HHhhccCccc
Confidence 432 3344887643
No 118
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.25 E-value=2.2e-10 Score=106.10 Aligned_cols=153 Identities=12% Similarity=0.076 Sum_probs=102.8
Q ss_pred CChHHHHHHHHHHh----CCCcEEEEcCCCCchhHHhHHHHHhhhc-cCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVD-TSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~lv~~~tG~GKT~~~~~~~~~~~~-~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
.+.++|...+..+. +|.+.|+.-.+|.|||+..+..+ ..+. .......+|||||. ++..++.+++.+++. .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--V 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--C
Confidence 67899999987764 67789999999999997654433 3332 22222348999995 566889999999875 3
Q ss_pred eeEEEEECCcccHHHHHH---hcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCC
Q 027749 130 IQAHACVGGKSVGEDIRK---LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~---l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~ 206 (219)
+++..+.|.......... ....++|+|+|.+.+..... .+.--..++|||||||++-+. ...+...++.+..
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a- 319 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFST- 319 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHhhc-
Confidence 566666665543322211 13468999999988765322 111224578999999997764 3445556666643
Q ss_pred CeEEEEeecc
Q 027749 207 LQVCCPGSCF 216 (219)
Q Consensus 207 ~q~i~~SATl 216 (219)
...+++|+|.
T Consensus 320 ~~RLLLTGTP 329 (1033)
T PLN03142 320 NYRLLITGTP 329 (1033)
T ss_pred CcEEEEecCC
Confidence 4568899995
No 119
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.24 E-value=1.9e-10 Score=107.10 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=53.0
Q ss_pred CChHHHHHHHHHH----hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 027749 55 KPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (219)
Q Consensus 55 ~~~~~Q~~~~~~~----~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (219)
.++|-|.+....+ .+++.+++.||||+|||++|++|++...... +.+++|-++|..|-+|+..
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~--~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK--EEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc--CCeEEEEcCCHHHHHHHHH
Confidence 7899999966554 4678899999999999999999998766544 3469999999999999876
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=9.6e-11 Score=105.90 Aligned_cols=127 Identities=18% Similarity=0.242 Sum_probs=98.2
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.|+++|...--.+.. .-|....||.|||+++.+|++....... .+-+++|+.-||.+-++.+..+....++++.+
T Consensus 82 ~~ydVQliGg~~Lh~--G~iaEM~TGEGKTLvA~l~a~l~al~G~---~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 82 RHFDVQLIGGMTLHE--GKIAEMRTGEGKTLVGTLAVYLNALSGK---GVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred CcchhHHHhhhHhcc--CccccccCCCCChHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 788888655444433 4688999999999999999887766643 48999999999999999999999999999999
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHHH-HHHHcC------CCCCCCccEEEeccchhhh
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~-~~l~~~------~~~~~~l~~lVvDE~h~l~ 188 (219)
+.++.+..++...+ .|+|+++|...|- ++|..+ ......+.+.||||+|.++
T Consensus 157 i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 157 VTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred ECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 88877766554443 4999999988762 223221 1123778999999999866
No 121
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.17 E-value=3.5e-10 Score=104.36 Aligned_cols=157 Identities=18% Similarity=0.078 Sum_probs=94.4
Q ss_pred CChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeE
Q 027749 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (219)
.|.|+|.++...+... ..+++.-.+|.|||.-+.+.+...+... ...++|||||. .|..|+..++.+.. ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 6899999998776543 4789999999999977766544444433 33469999997 79999999986543 2222
Q ss_pred EEEECCcccHHHHH---HhcCCCeEEEeChHHHHHHHH-cCCCCCCCccEEEeccchhhhcc-ccHHHHHHHHHhC-CCC
Q 027749 133 HACVGGKSVGEDIR---KLEHGVHVVSGTPGRVCDMIK-RKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYL-PPD 206 (219)
Q Consensus 133 ~~~~~~~~~~~~~~---~l~~~~~I~v~Tp~~l~~~l~-~~~~~~~~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~-~~~ 206 (219)
..+ ++........ ......+++|+|.+.+...-. ...+.-...++|||||||++-.. +-.......++.+ .+.
T Consensus 227 ~i~-~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 227 SLF-DEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred EEE-cCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 222 2211111000 111246899999876653110 01122246789999999998631 1011112223333 234
Q ss_pred CeEEEEeeccc
Q 027749 207 LQVCCPGSCFL 217 (219)
Q Consensus 207 ~q~i~~SATl~ 217 (219)
..++++|||.-
T Consensus 306 ~~~LLLTATP~ 316 (956)
T PRK04914 306 PGVLLLTATPE 316 (956)
T ss_pred CCEEEEEcCcc
Confidence 46899999963
No 122
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.16 E-value=8e-11 Score=107.80 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=117.0
Q ss_pred CChHHHHHHHHHHh-CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH-HhccccceeE
Q 027749 55 KPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQA 132 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~-~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~-~~~~~~~~~~ 132 (219)
..+|+|.++++.+- .+.+++|.+|+|+|||.|+-++++. .....++++++|..+.+..+++.+. ++.+..|..+
T Consensus 1143 ~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred ccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 44888999998865 4568999999999999999888776 3345679999999999998888884 4555567777
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc------cHHHHHHHHHhCCCC
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG------FKDQIYDVYRYLPPD 206 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~------~~~~~~~i~~~~~~~ 206 (219)
..+.|..+.+- ++....+|+|+||+++..+- ..+.+++.|+||+|.+...+ ... ++++-.++-++
T Consensus 1219 ~~l~ge~s~~l---kl~~~~~vii~tpe~~d~lq-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ 1289 (1674)
T KOG0951|consen 1219 VKLTGETSLDL---KLLQKGQVIISTPEQWDLLQ-----SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKK 1289 (1674)
T ss_pred EecCCccccch---HHhhhcceEEechhHHHHHh-----hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhh
Confidence 77777666542 34455799999999998772 57889999999999877432 113 77888888888
Q ss_pred CeEEEEeeccc
Q 027749 207 LQVCCPGSCFL 217 (219)
Q Consensus 207 ~q~i~~SATl~ 217 (219)
.+++.+|..+.
T Consensus 1290 ir~v~ls~~la 1300 (1674)
T KOG0951|consen 1290 IRVVALSSSLA 1300 (1674)
T ss_pred eeEEEeehhhc
Confidence 89999987764
No 123
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=3.3e-10 Score=101.90 Aligned_cols=130 Identities=17% Similarity=0.261 Sum_probs=102.0
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.|. .|++.|....-.+..|+ +....||.|||+++.+|++..+.... .+-+++|+.-||.+-++.+..+....|+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~---~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGK---GVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCC---CeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 344 78999977766665664 89999999999999999888777654 3899999999999999999999999999
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHHHH-HHHcC------CCCCCCccEEEeccchhhh
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRK------TLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~------~~~~~~l~~lVvDE~h~l~ 188 (219)
++.++.++.+..++... ..|+|..+|...|-. +++.+ ......+.+.||||+|.++
T Consensus 151 ~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred eEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 99999887766554333 378999999887753 33321 1123567899999999765
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.14 E-value=5.3e-10 Score=99.08 Aligned_cols=130 Identities=14% Similarity=0.217 Sum_probs=102.6
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.|. .|++.|....-.+++| -+.+..||.|||++..+|++....... .+-+++|+.-||.+-++.+..+....++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~G~---~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQGR---RVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHcCC---CeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 344 7899998888888776 377999999999999999888776643 4999999999999999999999999999
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHHHH-HHHcC------CCCCCCccEEEeccchhhh
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRK------TLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~------~~~~~~l~~lVvDE~h~l~ 188 (219)
++.+..++.+..+....+ .|+|..+|...|-. +++.+ ......+.+.||||+|.++
T Consensus 149 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 149 TVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999988877765544333 68999999887643 33221 1123567899999999766
No 125
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.13 E-value=1.5e-09 Score=94.39 Aligned_cols=154 Identities=14% Similarity=0.157 Sum_probs=99.1
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH-hccccceeEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAH 133 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~~~~~ 133 (219)
.-+..-.+.+..+.++.-++|.|+||+|||.-.--.+.+.-....+ ++-+.-|+|..|..+..++.. ..-..|-.|.
T Consensus 51 PI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 51 PIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred CHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 3455566677777888889999999999994443333333333322 388889999988888877743 3333344443
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhh--hccccHHHHHHHHHhCCCCCeEEE
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM--LSRGFKDQIYDVYRYLPPDLQVCC 211 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l--~~~~~~~~~~~i~~~~~~~~q~i~ 211 (219)
..+.-.+... ....|.+.|-+.|++-+.... .+++..+||+||||.= ..+-....++++++. +++..+|+
T Consensus 129 Y~IRFed~ts------~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIi 200 (674)
T KOG0922|consen 129 YTIRFEDSTS------KDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLII 200 (674)
T ss_pred eEEEecccCC------CceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEE
Confidence 3321111111 246899999999998666544 4789999999999951 111122333344333 34688999
Q ss_pred EeecccC
Q 027749 212 PGSCFLF 218 (219)
Q Consensus 212 ~SATl~~ 218 (219)
+|||+..
T Consensus 201 mSATlda 207 (674)
T KOG0922|consen 201 MSATLDA 207 (674)
T ss_pred EeeeecH
Confidence 9999865
No 126
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.13 E-value=2.7e-09 Score=85.24 Aligned_cols=131 Identities=20% Similarity=0.315 Sum_probs=96.8
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
..|+ .|++.|..++-.+..|+ +++..||-|||++..++++...... ..+=|++.+..||..=.+.+..+....|
T Consensus 73 ~~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G---~~V~vvT~NdyLA~RD~~~~~~~y~~LG 146 (266)
T PF07517_consen 73 TLGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQG---KGVHVVTSNDYLAKRDAEEMRPFYEFLG 146 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTS---S-EEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhc---CCcEEEeccHHHhhccHHHHHHHHHHhh
Confidence 3444 79999988887776664 9999999999999888877766653 3488999999999999999999999999
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHH-HHHcCC------CCCCCccEEEeccchhhh
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKT------LRTRAIKLLVLDESDEML 188 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~~------~~~~~l~~lVvDE~h~l~ 188 (219)
+++....++.+..++... ..++|+.+|...|.. .++.+. .....+.++||||+|.++
T Consensus 147 lsv~~~~~~~~~~~r~~~--Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 147 LSVGIITSDMSSEERREA--YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp --EEEEETTTEHHHHHHH--HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hccccCccccCHHHHHHH--HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999988876543333 357899999998865 443221 123678899999999876
No 127
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=1.7e-09 Score=98.35 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=62.4
Q ss_pred CCCCChHHHHHHHHHH----hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 52 GFEKPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 52 ~~~~~~~~Q~~~~~~~----~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
-|..++|.|.+.+..+ ..+++.++.+|||+|||++.+.+.+......+..++++|.+.|+....|+.+++++.
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 4556699999877654 477899999999999999999999988776555578999999999999999999885
No 128
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.07 E-value=1.5e-09 Score=99.44 Aligned_cols=163 Identities=17% Similarity=0.103 Sum_probs=96.7
Q ss_pred CCChHHHHHHHHHHhC--------CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 54 EKPSAIQQRAVMPIIK--------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~--------~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
...+.||.+|+..+.. |--++-.|.||+|||++=.- +++.+.....+.+..|-...|.|--|--+.+++-.
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDDKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCCCCCceEEEEccccceeccchHHHHHhc
Confidence 3557799999988752 22355668999999965433 34444455556666666666666666666665544
Q ss_pred cccceeEEEEECCcccHHH-------------------------------------------HHHhcC--------CCeE
Q 027749 126 DFINIQAHACVGGKSVGED-------------------------------------------IRKLEH--------GVHV 154 (219)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~l~~--------~~~I 154 (219)
.-.+-....++|+....+. ...+.+ .+.|
T Consensus 486 ~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 486 NLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 3322222233332221110 000100 2579
Q ss_pred EEeChHHHHHHHHc-C--CCCCC--C--ccEEEeccchhhhccccHHHHHHHHHhCC-CCCeEEEEeecccC
Q 027749 155 VSGTPGRVCDMIKR-K--TLRTR--A--IKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVCCPGSCFLF 218 (219)
Q Consensus 155 ~v~Tp~~l~~~l~~-~--~~~~~--~--l~~lVvDE~h~l~~~~~~~~~~~i~~~~~-~~~q~i~~SATl~~ 218 (219)
+|||++.++..... + ...+. . =+.|||||+|. ++......+.+++..+. ....++++|||+|+
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHa-YD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDD-YEPEDLPALLRLVQLAGLLGSRVLLSSATLPP 636 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCcc-CCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 99999999987632 1 11111 1 24699999996 44444555666666432 26789999999996
No 129
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.01 E-value=5.6e-09 Score=87.97 Aligned_cols=179 Identities=13% Similarity=0.093 Sum_probs=114.0
Q ss_pred CccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
+.+..|+..|++++..+.|+++.-...|..+.+.+..+.++.-++++|.||+|||.-.--+++........ .+...-|
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~--~v~CTQp 99 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLT--GVACTQP 99 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhcc--ceeecCc
Confidence 34788999999999999999876556677777777778888889999999999996665566665554432 3777889
Q ss_pred CHHHHHHHHHHHHHhcc-ccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhh
Q 027749 110 TRELATQTEKVILAIGD-FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 110 ~~~l~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~ 188 (219)
.+..|.++..+..+-+. ..|..+...+.-.+...... -.-.+|.+.|++-..+.. .+.+.+.||+||||.=.
T Consensus 100 rrvaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T------~Lky~tDgmLlrEams~p-~l~~y~viiLDeahERt 172 (699)
T KOG0925|consen 100 RRVAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNT------LLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHERT 172 (699)
T ss_pred hHHHHHHHHHHHHHHhccccchhccccccccccCChhH------HHHHhcchHHHHHHhhCc-ccccccEEEechhhhhh
Confidence 99988888877744321 11222211111111000000 011234444444222222 36788999999999521
Q ss_pred --ccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 189 --SRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 189 --~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
..-....++.++..- ++..+|.+|||+-+
T Consensus 173 lATDiLmGllk~v~~~r-pdLk~vvmSatl~a 203 (699)
T KOG0925|consen 173 LATDILMGLLKEVVRNR-PDLKLVVMSATLDA 203 (699)
T ss_pred HHHHHHHHHHHHHHhhC-CCceEEEeecccch
Confidence 122344556666655 48999999999854
No 130
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=98.96 E-value=7.5e-10 Score=93.48 Aligned_cols=148 Identities=20% Similarity=0.204 Sum_probs=101.0
Q ss_pred CChHHHHHHHHHHh-CC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccccee
Q 027749 55 KPSAIQQRAVMPII-KG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~-~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (219)
.++|+|..++..+. +| ++.+|+.|.|+|||++-+-+++.. +..+|+++.+...+.|+...+..|...-+-.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 56899999998876 33 589999999999997765544322 2349999999999999999999997665555
Q ss_pred EEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC---------CCCCCccEEEeccchhhhccccHHHHHHHHHh
Q 027749 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---------LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~---------~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~ 202 (219)
++.+.+..+ .....++.|+|+|...+..--+ +. +.-+.-+++++||+|.+-..-|+..+.-+-.+
T Consensus 376 i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~k-RS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aH 449 (776)
T KOG1123|consen 376 ICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGK-RSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAH 449 (776)
T ss_pred eEEeecccc-----ccCCCCCcEEEEeeehhhhccc-ccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHH
Confidence 554443322 1234589999999754332111 11 11133578999999987655555555544444
Q ss_pred CCCCCeEEEEeecccCC
Q 027749 203 LPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 203 ~~~~~q~i~~SATl~~~ 219 (219)
+ .++++|||=.|
T Consensus 450 c-----KLGLTATLvRE 461 (776)
T KOG1123|consen 450 C-----KLGLTATLVRE 461 (776)
T ss_pred h-----hccceeEEeec
Confidence 4 38999998543
No 131
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.95 E-value=9.6e-09 Score=95.66 Aligned_cols=137 Identities=14% Similarity=0.116 Sum_probs=95.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcC
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (219)
+..+||.-+|||||+.....+ +.+......|.++||+-++.|-.|..+.+..+........ ...+..+....+..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 468999999999997765543 3343346778999999999999999999998865532222 34455555555554
Q ss_pred C-CeEEEeChHHHHHHHHcC-CCCCCCc-cEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 151 G-VHVVSGTPGRVCDMIKRK-TLRTRAI-KLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 151 ~-~~I~v~Tp~~l~~~l~~~-~~~~~~l-~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
+ -.|+|+|-++|....... .....+- -.||+||||+-. ++..-..+...++ +...++||+|.
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~~-~a~~~gFTGTP 413 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ---YGELAKLLKKALK-KAIFIGFTGTP 413 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc---ccHHHHHHHHHhc-cceEEEeeCCc
Confidence 4 489999999999988664 1112222 268999999843 3333344444444 37899999985
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.94 E-value=5.8e-09 Score=94.20 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=98.5
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
..|. .|++.|.... +.-.+.-+....||-|||+++.+|++...... ..+-|++++..||.+-.+.+..+....|
T Consensus 72 ~lG~-r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~G---~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 72 TLGL-RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALTG---KGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred HhCC-CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhcC---CceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 3455 6888886554 33345678999999999999999987655543 3489999999999999999999999999
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHH-HHHcC------CCCCCCccEEEeccchhhh
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRK------TLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~------~~~~~~l~~lVvDE~h~l~ 188 (219)
+++.+..++.+..++... ..|+|..+|...|-. .++-+ ......+.+.||||+|.++
T Consensus 146 Lsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 146 LTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999988877776654433 468999999876642 33221 1123568899999999766
No 133
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1e-08 Score=90.93 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=91.6
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC---CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEEC
Q 027749 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQTEKVILAIGDFINIQAHACVG 137 (219)
Q Consensus 61 ~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 137 (219)
++++..+..+.-+||||.||+|||.-.---++..=..+. .+.-+=|.-|+|..|..+..+...-+...+..+...+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR 341 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR 341 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE
Confidence 345555666667999999999999443222222212221 12246677899988887777764443334444444331
Q ss_pred CcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhh--cc---ccHHHHHHHHHhCCC------C
Q 027749 138 GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML--SR---GFKDQIYDVYRYLPP------D 206 (219)
Q Consensus 138 ~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~--~~---~~~~~~~~i~~~~~~------~ 206 (219)
-.. ....+..|-++|-+.|++-+.+.. .++....||+||||.=. .. |+...+..+-..+.+ .
T Consensus 342 fd~------ti~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kp 414 (1172)
T KOG0926|consen 342 FDG------TIGEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKP 414 (1172)
T ss_pred ecc------ccCCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCc
Confidence 111 112356899999999999887654 47889999999999511 11 222223333333322 5
Q ss_pred CeEEEEeecccC
Q 027749 207 LQVCCPGSCFLF 218 (219)
Q Consensus 207 ~q~i~~SATl~~ 218 (219)
..+|+|||||.-
T Consensus 415 LKLIIMSATLRV 426 (1172)
T KOG0926|consen 415 LKLIIMSATLRV 426 (1172)
T ss_pred eeEEEEeeeEEe
Confidence 679999999863
No 134
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.93 E-value=1.6e-08 Score=79.22 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=50.6
Q ss_pred CChHHHHHHHHHHhCCCc-EEEEcCCCCchhHHhHHHHHhhh------ccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 027749 55 KPSAIQQRAVMPIIKGRD-VIAQAQSGTGKTSMIALTVCQTV------DTSSREVQALILSPTRELATQTEKVILA 123 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~-~lv~~~tG~GKT~~~~~~~~~~~------~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (219)
++++.|..++..+++... .+|+||.|+|||.... .++..+ .....+.++++++|++..++.+.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 357889999999998888 9999999999994433 334433 1234566799999999999999999887
No 135
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.93 E-value=2.3e-08 Score=90.64 Aligned_cols=64 Identities=27% Similarity=0.331 Sum_probs=51.9
Q ss_pred CCCCChHHHHHHHHHHh---C------CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 027749 52 GFEKPSAIQQRAVMPII---K------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (219)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~---~------~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 118 (219)
|| .+++-|.+....+. . ++..+|.||||+|||++|++|++......+ .++||=+.|..|-+|+.
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~--k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEK--KKLVISTATVALQEQLV 95 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH
Confidence 44 68999999766543 3 367899999999999999999988766543 45999999999998886
No 136
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.92 E-value=2.2e-08 Score=88.34 Aligned_cols=152 Identities=16% Similarity=0.148 Sum_probs=102.9
Q ss_pred CChHHHHHHHHHHh----CCCcEEEEcCCCCchhHHhHHHHHhhhcc--CCCceeEEEEcCCHHHHHHHHHHHHHhcccc
Q 027749 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDT--SSREVQALILSPTRELATQTEKVILAIGDFI 128 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~lv~~~tG~GKT~~~~~~~~~~~~~--~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (219)
.+.++|.+.++.+. +|-+.|+.-.+|-|||+--+ .++..+.. ...+| -+|++|...|. .+.+++.+++.
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~~~~GP-fLVi~P~StL~-NW~~Ef~rf~P-- 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRKGIPGP-FLVIAPKSTLD-NWMNEFKRFTP-- 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhcCCCCC-eEEEeeHhhHH-HHHHHHHHhCC--
Confidence 67888988776643 67789999999999995433 33333322 22344 78999987774 57888888876
Q ss_pred ceeEEEEECCcccHHHHHH---hcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCC
Q 027749 129 NIQAHACVGGKSVGEDIRK---LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~---l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~ 205 (219)
++++..++|.........+ .....+|+|+|.+..++-- ..+.--.-+|+||||+|++-+. ...+..+++.+..
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~ 317 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKT 317 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHHHHhcc
Confidence 4788888888764443222 1347899999987665431 1111123468999999998876 4666678888754
Q ss_pred CCeEEEEeecc
Q 027749 206 DLQVCCPGSCF 216 (219)
Q Consensus 206 ~~q~i~~SATl 216 (219)
. ..+++|+|.
T Consensus 318 ~-nrLLlTGTP 327 (971)
T KOG0385|consen 318 D-NRLLLTGTP 327 (971)
T ss_pred c-ceeEeeCCc
Confidence 3 456677773
No 137
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.91 E-value=7.7e-09 Score=93.46 Aligned_cols=74 Identities=22% Similarity=0.241 Sum_probs=60.8
Q ss_pred HHCCCCCChHHHHHHHHHHh----CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 49 YQYGFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~~~----~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
..+....|++.|.+.+..+. .++..+++||||+|||++|+.|.+......+ .+++|.++|+.+-.|+.+....+
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~--~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG--KKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC--CcEEEECCCHHHHHHHHHhhcch
Confidence 34556689999999886543 5566999999999999999999999887664 56999999999999998877554
No 138
>COG4889 Predicted helicase [General function prediction only]
Probab=98.90 E-value=8.5e-09 Score=92.22 Aligned_cols=150 Identities=21% Similarity=0.222 Sum_probs=96.6
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC----CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEc
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~----~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (219)
..|+.+.. ..+..++.-..-++|+|+|+.++.....+ ...-+...+|+|||+..+- +.+.+.. .++|+++
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~----~~iL~Lv 213 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA----ARILFLV 213 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh----hheEeec
Confidence 44555422 34444444445568999999999988754 1234566789999966644 2333332 5699999
Q ss_pred CCHHHHHHHHHHHHHhccccceeEEEEECCcccHHH-------------------------HHHhcCCCeEEEeChHHHH
Q 027749 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGED-------------------------IRKLEHGVHVVSGTPGRVC 163 (219)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~I~v~Tp~~l~ 163 (219)
|+.+|..|-.+++..-. ...++...+++..+.... .+.-..+--|+++|.+++.
T Consensus 214 PSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~ 292 (1518)
T COG4889 214 PSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLP 292 (1518)
T ss_pred chHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchH
Confidence 99999998887775432 234555555543332110 1111235569999999888
Q ss_pred HHHHcCCCCCCCccEEEeccchhhhc
Q 027749 164 DMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 164 ~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
..-.-...-+..+++||+||||+...
T Consensus 293 ~i~eAQe~G~~~fDliicDEAHRTtG 318 (1518)
T COG4889 293 RIKEAQEAGLDEFDLIICDEAHRTTG 318 (1518)
T ss_pred HHHHHHHcCCCCccEEEecchhcccc
Confidence 76554444578899999999998654
No 139
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.88 E-value=2.5e-08 Score=90.20 Aligned_cols=130 Identities=19% Similarity=0.231 Sum_probs=99.0
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.|. .|+++|...--.+. ..-|....||-|||+++.+|++......++ +-||+++.-||..=.+.+..+....|+
T Consensus 82 lG~-r~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~Gkg---VhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALTGKG---VHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred hCC-CcchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhcCCC---eEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 344 78888865544443 446889999999999999998877766433 999999999999999999999999999
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHH-----HHHHHc--CCCCCCCccEEEeccchhhh
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-----CDMIKR--KTLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l-----~~~l~~--~~~~~~~l~~lVvDE~h~l~ 188 (219)
++.+..++.+..+. +-...|+|+.+|+..| .+.+.. .......+.+.||||+|.++
T Consensus 156 tvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99988776665543 3345899999999888 332221 11234678899999999765
No 140
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.85 E-value=1.5e-08 Score=89.53 Aligned_cols=155 Identities=13% Similarity=0.107 Sum_probs=102.5
Q ss_pred CChHHHHHHHHHHh----CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.+-++|.-.++.+. ++-+.|+.-.+|-||| |-.++.+..+...+....-|||||...| +.|.+++.+|+.. +
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKT-iQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPs--l 474 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKT-IQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPS--L 474 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcch-hHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCc--e
Confidence 36778887776542 5567899999999999 5556666666554444447999998777 4588888888875 7
Q ss_pred eEEEEECCcccHHHHHHhc----CCCeEEEeChHHHHHHHH-cCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCC
Q 027749 131 QAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIK-RKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~----~~~~I~v~Tp~~l~~~l~-~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~ 205 (219)
++..++|......+.+... .+++|+|+|..-....-. +..+.-.++.++|+||.|.+-+.. ......++..-
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I~-- 551 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSIN-- 551 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcccc--
Confidence 7888888876555544432 268999999743321000 011223567899999999877653 33444444332
Q ss_pred CCeEEEEeecc
Q 027749 206 DLQVCCPGSCF 216 (219)
Q Consensus 206 ~~q~i~~SATl 216 (219)
..+.|++|+|.
T Consensus 552 An~RlLLTGTP 562 (941)
T KOG0389|consen 552 ANFRLLLTGTP 562 (941)
T ss_pred ccceEEeeCCc
Confidence 45678888884
No 141
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.83 E-value=1e-07 Score=87.53 Aligned_cols=143 Identities=16% Similarity=0.220 Sum_probs=86.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH-----Hhc----cccceeEEEEECCc--
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-----AIG----DFINIQAHACVGGK-- 139 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~-----~~~----~~~~~~~~~~~~~~-- 139 (219)
.++.+..+||+|||.+|+-.+++.....+ ..+.||+||+.+.-+.+...+. ... ....+....+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 47899999999999999888766554433 3679999999998887776653 111 11224444444332
Q ss_pred -----ccHHHHHHhc-------CCCeEEEeChHHHHHHHH-cCC----------CCCCCc----cEEEeccchhhhcccc
Q 027749 140 -----SVGEDIRKLE-------HGVHVVSGTPGRVCDMIK-RKT----------LRTRAI----KLLVLDESDEMLSRGF 192 (219)
Q Consensus 140 -----~~~~~~~~l~-------~~~~I~v~Tp~~l~~~l~-~~~----------~~~~~l----~~lVvDE~h~l~~~~~ 192 (219)
+.....+..- ++.+|+|+|-+.|..-.. +.. ..+..+ -.||+||.|++...
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-- 216 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-- 216 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--
Confidence 1122222221 157899999988865221 110 111111 27999999997542
Q ss_pred HHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 193 KDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 193 ~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
......| ..+.+-+ ++.+|||++.
T Consensus 217 ~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 2233334 5554332 5779999975
No 142
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.81 E-value=1.4e-07 Score=84.72 Aligned_cols=153 Identities=15% Similarity=0.057 Sum_probs=105.5
Q ss_pred CChHHHHHHHHHHh----------CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCc-----eeEEEEcCCHHHHHHHHH
Q 027749 55 KPSAIQQRAVMPII----------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE-----VQALILSPTRELATQTEK 119 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----------~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~-----~~~lil~P~~~l~~q~~~ 119 (219)
.++|+|++.+.-+- .....|+.-.+|+|||+-.+. ++..+....+. .++|||+| ..|+..+..
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Is-flwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCIS-FIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHH-HHHHHHHhCcCccccccccEEEcc-HHHHHHHHH
Confidence 56899999886542 123467788899999965543 44444444334 67999999 678899999
Q ss_pred HHHHhccccceeEEEEECCcccHHHHHHh---------cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 120 VILAIGDFINIQAHACVGGKSVGEDIRKL---------EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
++.+|.....+....+++..+. .+.++ .....|++.+.+.+.+.... +....++++|+||.|++-+.
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~--~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKS--SWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHhccccccceeeeecccch--hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch
Confidence 9999987656777777776664 11111 11346778888888755443 33567899999999986654
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 191 GFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 191 ~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
...+...+..+. ....|++|+|+
T Consensus 392 --~s~~~kaL~~l~-t~rRVLLSGTp 414 (776)
T KOG0390|consen 392 --DSLTLKALSSLK-TPRRVLLTGTP 414 (776)
T ss_pred --hhHHHHHHHhcC-CCceEEeeCCc
Confidence 355566666663 45678899985
No 143
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.81 E-value=3.4e-08 Score=76.07 Aligned_cols=120 Identities=20% Similarity=0.227 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHhCCC--cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEE
Q 027749 56 PSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (219)
Q Consensus 56 ~~~~Q~~~~~~~~~~~--~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (219)
+++-|..++..++.+. -.+++|+.|+|||.+ +-.+...+... +.++++++||...+..+.+... +..
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~~-------~~a- 70 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA--GKRVIGLAPTNKAAKELREKTG-------IEA- 70 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT--T--EEEEESSHHHHHHHHHHHT-------S-E-
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC--CCeEEEECCcHHHHHHHHHhhC-------cch-
Confidence 6788999999986443 477889999999953 33455555544 4679999999999887666531 111
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcC----CCCCCCccEEEeccchhhhccccHHHHHHHHHhCCC-CCe
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQ 208 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~----~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~-~~q 208 (219)
.|-.+++...... .......++|||||+-++. ...+..+++..+. +.+
T Consensus 71 -----------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~k 123 (196)
T PF13604_consen 71 -----------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAK 123 (196)
T ss_dssp -----------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-E
T ss_pred -----------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCE
Confidence 1222221111110 0014556799999998655 4567777777766 667
Q ss_pred EEEEe
Q 027749 209 VCCPG 213 (219)
Q Consensus 209 ~i~~S 213 (219)
+|++.
T Consensus 124 lilvG 128 (196)
T PF13604_consen 124 LILVG 128 (196)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 77664
No 144
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.78 E-value=1.3e-07 Score=82.54 Aligned_cols=160 Identities=13% Similarity=0.117 Sum_probs=101.1
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH-hccccc
Q 027749 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFIN 129 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~-~~~~~~ 129 (219)
+.....+++-.+.+..+....-++|.|.||||||.-.--.+...=.. ..+.++=+.-|++..|..+..++.+ ++-..|
T Consensus 261 RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG 339 (902)
T KOG0923|consen 261 RKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLG 339 (902)
T ss_pred HhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-cCCceEeecCcchHHHHHHHHHHHHHhCcccc
Confidence 34456677888888888888899999999999995433333332222 2344477888999999988887743 333333
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhh-cc-ccHHHHHHHHHhCCCCC
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SR-GFKDQIYDVYRYLPPDL 207 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~-~~-~~~~~~~~i~~~~~~~~ 207 (219)
..|..-+.-.+.-. ...-|=+.|.+.|++-+... .++.....|||||||.=. .. -....+..|.+. .++.
T Consensus 340 ~eVGYsIRFEdcTS------ekTvlKYMTDGmLlREfL~e-pdLasYSViiiDEAHERTL~TDILfgLvKDIar~-RpdL 411 (902)
T KOG0923|consen 340 HEVGYSIRFEDCTS------EKTVLKYMTDGMLLREFLSE-PDLASYSVIIVDEAHERTLHTDILFGLVKDIARF-RPDL 411 (902)
T ss_pred cccceEEEeccccC------cceeeeeecchhHHHHHhcc-ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhh-CCcc
Confidence 22222111111100 12346689999998855443 367889999999999511 11 122333444333 5689
Q ss_pred eEEEEeecccCC
Q 027749 208 QVCCPGSCFLFD 219 (219)
Q Consensus 208 q~i~~SATl~~~ 219 (219)
.+++.|||+.++
T Consensus 412 KllIsSAT~DAe 423 (902)
T KOG0923|consen 412 KLLISSATMDAE 423 (902)
T ss_pred eEEeeccccCHH
Confidence 999999998653
No 145
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.74 E-value=1.5e-07 Score=83.50 Aligned_cols=153 Identities=16% Similarity=0.076 Sum_probs=95.3
Q ss_pred CChHHHHHHHHHH----hCCCcEEEEcCCCCchhHHhHHHHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 55 KPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 55 ~~~~~Q~~~~~~~----~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
.+.++|+..+..+ .++..-|+--.+|-|||.- .+..+..+..+ .....+|||||. .+..|+..++..+...
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQ-iisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~-- 280 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQ-IISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPP-- 280 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchh-HHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcc--
Confidence 5578899877554 3667789999999999922 22222222222 222449999995 6778999999999765
Q ss_pred eeEEEEECCccc--------HHHHHHh-----cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHH
Q 027749 130 IQAHACVGGKSV--------GEDIRKL-----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 196 (219)
Q Consensus 130 ~~~~~~~~~~~~--------~~~~~~l-----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~ 196 (219)
+++..+++..+. ......+ ..+..|+++|.+.|.-. ...+.-..-+|+|+||.|.+-+++ ..+
T Consensus 281 ~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn--s~i 356 (923)
T KOG0387|consen 281 FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN--SKI 356 (923)
T ss_pred eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc--cHH
Confidence 556656554442 1111111 12456899997654322 112222234689999999988875 445
Q ss_pred HHHHHhCCCCCeEEEEeecc
Q 027749 197 YDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 197 ~~i~~~~~~~~q~i~~SATl 216 (219)
....+.++ ..+.|++|+|.
T Consensus 357 slackki~-T~~RiILSGTP 375 (923)
T KOG0387|consen 357 SLACKKIR-TVHRIILSGTP 375 (923)
T ss_pred HHHHHhcc-ccceEEeeCcc
Confidence 55555554 45678888874
No 146
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.73 E-value=2.3e-08 Score=76.92 Aligned_cols=145 Identities=14% Similarity=0.182 Sum_probs=74.9
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHH-------HHHHHhcc
Q 027749 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-------KVILAIGD 126 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~-------~~~~~~~~ 126 (219)
...+..|..++..+.+..-+++.||.|+|||+.++...++.+.. +.-.+++++-|..+..+.+- +.+..+..
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~ 81 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLR 81 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TTTH
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHHHH
Confidence 45678899999999988889999999999999988888887766 44456888888765422111 11100000
Q ss_pred ccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCC
Q 027749 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (219)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~ 206 (219)
..--....+.+.. ....+.....|-+..+. .++.+. ++ -.+||+|||.++. ...+..++..+..+
T Consensus 82 p~~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~----~iRGrt--~~-~~~iIvDEaQN~t----~~~~k~ilTR~g~~ 146 (205)
T PF02562_consen 82 PIYDALEELFGKE----KLEELIQNGKIEIEPLA----FIRGRT--FD-NAFIIVDEAQNLT----PEELKMILTRIGEG 146 (205)
T ss_dssp HHHHHHTTTS-TT----CHHHHHHTTSEEEEEGG----GGTT----B--SEEEEE-SGGG------HHHHHHHHTTB-TT
T ss_pred HHHHHHHHHhChH----hHHHHhhcCeEEEEehh----hhcCcc--cc-ceEEEEecccCCC----HHHHHHHHcccCCC
Confidence 0000000000111 11222223445555542 222222 22 2789999999766 57888888888888
Q ss_pred CeEEEEee
Q 027749 207 LQVCCPGS 214 (219)
Q Consensus 207 ~q~i~~SA 214 (219)
++++++.-
T Consensus 147 skii~~GD 154 (205)
T PF02562_consen 147 SKIIITGD 154 (205)
T ss_dssp -EEEEEE-
T ss_pred cEEEEecC
Confidence 88888753
No 147
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.73 E-value=6.8e-08 Score=86.64 Aligned_cols=133 Identities=15% Similarity=0.090 Sum_probs=88.7
Q ss_pred EEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHH---Hhc-
Q 027749 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE- 149 (219)
Q Consensus 74 lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~- 149 (219)
+..+.+|+|||.+|+-.+-..+.. +..+||++|...+..|+.+.++..+.. ..+..++++.+..++.. ...
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHHHhC
Confidence 344446999999998766555554 335999999999999999999877641 34666777776655433 333
Q ss_pred CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc-----ccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-----GFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 150 ~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~-----~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+...|+|||-.. -...++++++|||||-|.-.-. .|...=..+++.-..++.+|+-|||-+-
T Consensus 239 G~~~IViGtRSA-------vFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSl 305 (665)
T PRK14873 239 GQARVVVGTRSA-------VFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTA 305 (665)
T ss_pred CCCcEEEEccee-------EEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCH
Confidence 357999999311 1246789999999999853211 1222212223333457889999999764
No 148
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.70 E-value=2.6e-07 Score=82.01 Aligned_cols=139 Identities=18% Similarity=0.199 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCCchhHHhH--HHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA--LTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~--~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
..+|+.++..++.++-++|.|+.|+|||.... +.++........++++++.+||...+..+.+.+..........
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 37899999999999999999999999995432 2222222222123579999999999998888776543222110
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc------CCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCe
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~------~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q 208 (219)
.... ....+-..|-.+|+..... ...+...+++|||||+-++. ...+..+++.++++.+
T Consensus 224 -------~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 -------EALI----AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTK 288 (586)
T ss_pred -------hhhh----hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCE
Confidence 0000 0111223454444433211 11123457899999998544 4567788888898999
Q ss_pred EEEEe
Q 027749 209 VCCPG 213 (219)
Q Consensus 209 ~i~~S 213 (219)
+|++.
T Consensus 289 lIlvG 293 (586)
T TIGR01447 289 LILLG 293 (586)
T ss_pred EEEEC
Confidence 88874
No 149
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.70 E-value=5.7e-07 Score=80.12 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=87.7
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhcc--CCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT--SSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~--~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.++|+.|+...+.++-.+|.|++|+|||....- ++..+.. .....++.+++||...+..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~--- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT--- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---
Confidence 479999999999989999999999999955322 2222221 1223578899999999999988876543322210
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc------CCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCe
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~------~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q 208 (219)
.... .....-..|-.+|+..... ...+.-.+++|||||+.++- ...+..+++.++++.+
T Consensus 230 -------~~~~----~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~r 294 (615)
T PRK10875 230 -------DEQK----KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHAR 294 (615)
T ss_pred -------hhhh----hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCE
Confidence 0000 0111122344444332111 11123346899999998543 5778888889999999
Q ss_pred EEEEe
Q 027749 209 VCCPG 213 (219)
Q Consensus 209 ~i~~S 213 (219)
+|++.
T Consensus 295 lIlvG 299 (615)
T PRK10875 295 VIFLG 299 (615)
T ss_pred EEEec
Confidence 98875
No 150
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.66 E-value=4e-07 Score=79.84 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=94.4
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhc-ccccee
Q 027749 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG-DFINIQ 131 (219)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~-~~~~~~ 131 (219)
+......+.+.+..+..+.-++|.+.||||||.-..-.++..=+.. ..-+-+.-|.+..|..+..++.+-+ ...|-.
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~--~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD--NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc--CCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 3455667777777788888899999999999955444444433332 2245667799999998888874433 222322
Q ss_pred EEEEECCcccHHHHHHhcCCCeEEEeChHHHHH-HHHcCCCCCCCccEEEeccchhhh-ccc-cHHHHHHHHHhCCCCCe
Q 027749 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTLRTRAIKLLVLDESDEML-SRG-FKDQIYDVYRYLPPDLQ 208 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~~~~~~~l~~lVvDE~h~l~-~~~-~~~~~~~i~~~~~~~~q 208 (219)
+.+.+.-.+... ....|-+.|-+.|+. .+..+ .+.+...||+||||.=. +.. ....++.++.. ..+..
T Consensus 432 VGYsIRFEdvT~------~~T~IkymTDGiLLrEsL~d~--~L~kYSviImDEAHERslNtDilfGllk~~lar-RrdlK 502 (1042)
T KOG0924|consen 432 VGYSIRFEDVTS------EDTKIKYMTDGILLRESLKDR--DLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDLK 502 (1042)
T ss_pred cceEEEeeecCC------CceeEEEeccchHHHHHhhhh--hhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccce
Confidence 222211111100 234677899998886 33332 46788999999999521 111 11222222222 34788
Q ss_pred EEEEeecccC
Q 027749 209 VCCPGSCFLF 218 (219)
Q Consensus 209 ~i~~SATl~~ 218 (219)
+|..|||+..
T Consensus 503 liVtSATm~a 512 (1042)
T KOG0924|consen 503 LIVTSATMDA 512 (1042)
T ss_pred EEEeeccccH
Confidence 9999999864
No 151
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.63 E-value=2.8e-07 Score=78.05 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=98.5
Q ss_pred CCChHHHHHHHHHHh-CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeE
Q 027749 54 EKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~-~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (219)
..+.|+|.+-+...+ +|..+++.-.+|-|||.-++. +....... . | .+||||.. +--.+.+.+..++..... +
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAla-IA~yyraE-w-p-lliVcPAs-vrftWa~al~r~lps~~p-i 270 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALA-IARYYRAE-W-P-LLIVCPAS-VRFTWAKALNRFLPSIHP-I 270 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHH-HHHHHhhc-C-c-EEEEecHH-HhHHHHHHHHHhcccccc-e
Confidence 356788999887754 678899999999999955433 22222222 2 2 89999964 445678888888765433 4
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
..+.++...... +..-..|.|.+.+.+..+-. .+.....++||+||.|.+-+.. -...+.++.-+..-..+|++
T Consensus 271 ~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvILL 344 (689)
T KOG1000|consen 271 FVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVILL 344 (689)
T ss_pred EEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheEEe
Confidence 555555544322 12235688888776654322 2223457899999999876543 34466666666666779999
Q ss_pred eecc
Q 027749 213 GSCF 216 (219)
Q Consensus 213 SATl 216 (219)
|+|.
T Consensus 345 SGTP 348 (689)
T KOG1000|consen 345 SGTP 348 (689)
T ss_pred cCCc
Confidence 9985
No 152
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.60 E-value=1.2e-06 Score=79.89 Aligned_cols=124 Identities=22% Similarity=0.209 Sum_probs=80.6
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEE
Q 027749 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (219)
..+++.|+.++..+..++-+++.|+.|+|||... -.++..+........+++++||...+..+.+.. +...
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~-------g~~a- 392 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT-------GLTA- 392 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc-------CCcc-
Confidence 4789999999999998889999999999999433 334444443322246888999998887655432 1110
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc-----CCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCe
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-----KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~-----~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q 208 (219)
.|-.+++..... ..-.....++|||||++++. ...+..+++.++.+.+
T Consensus 393 -----------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~r 445 (720)
T TIGR01448 393 -----------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHAR 445 (720)
T ss_pred -----------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCE
Confidence 122222111000 00112457899999999754 3456777788888888
Q ss_pred EEEEe
Q 027749 209 VCCPG 213 (219)
Q Consensus 209 ~i~~S 213 (219)
+|++.
T Consensus 446 lilvG 450 (720)
T TIGR01448 446 LLLVG 450 (720)
T ss_pred EEEEC
Confidence 88875
No 153
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.58 E-value=6.4e-07 Score=81.14 Aligned_cols=129 Identities=15% Similarity=0.187 Sum_probs=96.8
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccccee
Q 027749 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (219)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (219)
|. .|+++|....-.+..| -|....||=|||+++.+|++-.....++ +-||+...-||..=.+.+..+....|++
T Consensus 76 G~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~Gkg---VhVVTvNdYLA~RDae~mg~vy~fLGLs 149 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGKG---VIVSTVNEYLAERDAEEMGKVFNFLGLS 149 (925)
T ss_pred CC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCCc---eEEEecchhhhhhhHHHHHHHHHHhCCc
Confidence 44 7899997766555555 4799999999999999988776665433 7888888999998888888888888999
Q ss_pred EEEEECCcccHHHHHHhcCCCeEEEeChHHHHH-HHHcCC------CCCCCccEEEeccchhhh
Q 027749 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKT------LRTRAIKLLVLDESDEML 188 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~~------~~~~~l~~lVvDE~h~l~ 188 (219)
+.+...+.+..+.... ..|+|..+|...|-. +++-+- .....+.+.||||+|.++
T Consensus 150 vG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 150 VGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred eeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 9888776666554333 469999999887754 443211 123567899999999765
No 154
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.56 E-value=6e-07 Score=75.33 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=69.9
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (219)
-++|.|..|||||+..+- ++..+.....+..++++++...+...+.+.+...... ..
T Consensus 3 v~~I~G~aGTGKTvla~~-l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------------~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALN-LAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------------KL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHH-HHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc----------------------ch
Confidence 478999999999955543 4455433334566999999999999888877553200 01
Q ss_pred CeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc-------cHHHHHHHHHh
Q 027749 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-------FKDQIYDVYRY 202 (219)
Q Consensus 152 ~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~-------~~~~~~~i~~~ 202 (219)
....+..+..+...+..........++|||||||++...+ ....+..+++.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1223344554444333223346788999999999998731 24667777776
No 155
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.48 E-value=1.1e-06 Score=76.87 Aligned_cols=76 Identities=22% Similarity=0.186 Sum_probs=61.3
Q ss_pred HHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 47 GIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
.+...++.+++.-|..|+.++++..=.+++||.|+|||+...--+++.+... ...+|+++|+...++|+.+.+.+-
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~--~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQH--AGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhc--CCceEEEcccchhHHHHHHHHHhc
Confidence 3444567788999999999999998999999999999977665555554443 334999999999999999988665
No 156
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.47 E-value=1.3e-07 Score=86.04 Aligned_cols=132 Identities=15% Similarity=0.208 Sum_probs=100.8
Q ss_pred CChHHHHHHHHHHh-CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEE
Q 027749 55 KPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~-~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (219)
...|.|.+.+-... -..++++-+|||+|||.++-+.+...+...+ +.++++++|..+|+..-.+.+.+.....|+++.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p-~~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP-GSKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC-CccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 34455555543332 2357888999999999999998877776654 478999999999999888888666555588888
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc--CCCCCCCccEEEeccchhhhcc
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~--~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
.+.|....+.. -...++++|+||+++....++ ..-.++++..+|+||.|++.+.
T Consensus 1006 e~tgd~~pd~~---~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1006 ELTGDVTPDVK---AVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred eccCccCCChh---heecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 88888777622 124689999999999888774 4456889999999999987654
No 157
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.43 E-value=6.2e-06 Score=66.63 Aligned_cols=155 Identities=19% Similarity=0.129 Sum_probs=99.6
Q ss_pred CChHHHHHHHHHHh----------CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 55 KPSAIQQRAVMPII----------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----------~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
.+...|.+++-... .+..+++--.||.||--...--+++.+...+ .++|++..+..|..+..+.++.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--~r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--KRAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--CceEEEECChhhhhHHHHHHHHh
Confidence 35777888775543 2345788888999988666555666666543 35999999999999999999988
Q ss_pred ccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcC---CCCC---------CCccEEEeccchhhhcccc
Q 027749 125 GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLRT---------RAIKLLVLDESDEMLSRGF 192 (219)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~---~~~~---------~~l~~lVvDE~h~l~~~~~ 192 (219)
+.. .+.+..+..- +.. ....-+-.|+++|...|...-..+ ...+ ..-.+||+||||.+-+..-
T Consensus 115 G~~-~i~v~~l~~~-~~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 115 GAD-NIPVHPLNKF-KYG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCC-cccceechhh-ccC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 654 3444333211 100 001124469999998877654321 1111 1234899999998776532
Q ss_pred --------HHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 193 --------KDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 193 --------~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
...+..+.+.+|+ -+++.+|||--
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP~-ARvvY~SATga 221 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLPN-ARVVYASATGA 221 (303)
T ss_pred cCccccHHHHHHHHHHHhCCC-CcEEEeccccc
Confidence 2345566667764 46999999964
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.41 E-value=2e-06 Score=77.36 Aligned_cols=135 Identities=11% Similarity=0.091 Sum_probs=83.7
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (219)
-.+|.+|+|+|||.+.+-++-+.+... ..+++++..+++|+.++...++...-. ++....-.++.... ...
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~--~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~------~~~ 121 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNP--DKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIID------GRP 121 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCC--CCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeecccccccc------ccc
Confidence 468999999999966655554444332 456999999999999999988755321 22211111111110 012
Q ss_pred CeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHH------HHHHHH-hCCCCCeEEEEeecccC
Q 027749 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQ------IYDVYR-YLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 152 ~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~------~~~i~~-~~~~~~q~i~~SATl~~ 218 (219)
++-+++..++|.+.-. -.+.+.++||+||+...+..-|... +..++. .+.....+|++-|++..
T Consensus 122 ~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~ 192 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLND 192 (824)
T ss_pred cCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCH
Confidence 4567777777766532 2466789999999987776532222 222222 23456679999999864
No 159
>PRK10536 hypothetical protein; Provisional
Probab=98.40 E-value=2.6e-06 Score=67.65 Aligned_cols=147 Identities=13% Similarity=0.097 Sum_probs=83.6
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHH-------HHHHHHH
Q 027749 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ-------TEKVILA 123 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q-------~~~~~~~ 123 (219)
.++..-+..|...+..+.+...+++.||+|+|||+......++.+... .-.++++.-|..+..+. ..+.+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p 133 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGDIAEKFAP 133 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCCHHHHHHH
Confidence 355667889999999888888899999999999977777666555443 23446666565432211 1111111
Q ss_pred hccccceeEEEEECCcccHHHHHHh--cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHH
Q 027749 124 IGDFINIQAHACVGGKSVGEDIRKL--EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 201 (219)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~ 201 (219)
+....--....+.+. .....+ .....|-|... ..++.+.+ +-++||+|||+++. ...+..++.
T Consensus 134 ~~~pi~D~L~~~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrtl---~~~~vIvDEaqn~~----~~~~k~~lt 198 (262)
T PRK10536 134 YFRPVYDVLVRRLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRTF---ENAVVILDEAQNVT----AAQMKMFLT 198 (262)
T ss_pred HHHHHHHHHHHHhCh----HHHHHHHHhccCcEEEecH----HHhcCCcc---cCCEEEEechhcCC----HHHHHHHHh
Confidence 111100000000111 111111 11223444432 34444443 23799999999755 478888888
Q ss_pred hCCCCCeEEEEe
Q 027749 202 YLPPDLQVCCPG 213 (219)
Q Consensus 202 ~~~~~~q~i~~S 213 (219)
.++.+.++|+..
T Consensus 199 R~g~~sk~v~~G 210 (262)
T PRK10536 199 RLGENVTVIVNG 210 (262)
T ss_pred hcCCCCEEEEeC
Confidence 888888887754
No 160
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.35 E-value=9.4e-06 Score=63.26 Aligned_cols=152 Identities=22% Similarity=0.242 Sum_probs=93.0
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhC---CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK---GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
.+|+-...+.+++=.+.. ++ -.++.|.++...+.+ |+|.+.+.-+|.|||.+. +|++..+...+. .-+.+++|
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~-~LvrviVp 78 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGS-RLVRVIVP 78 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCC-cEEEEEcC
Confidence 356666677777766653 33 578889998887764 578999999999999554 556665555433 34666777
Q ss_pred CHHHHHHHHHHHHHhccc-cceeEEEE--ECCcccH-H---HHH----HhcCCCeEEEeChHHHHHHHHcC-------CC
Q 027749 110 TRELATQTEKVILAIGDF-INIQAHAC--VGGKSVG-E---DIR----KLEHGVHVVSGTPGRVCDMIKRK-------TL 171 (219)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~-~~~~~~~~--~~~~~~~-~---~~~----~l~~~~~I~v~Tp~~l~~~l~~~-------~~ 171 (219)
++|..|.++.+...... .+-++..+ ....... . ... .-.....|+++||+.++...... ..
T Consensus 79 -k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~ 157 (229)
T PF12340_consen 79 -KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKP 157 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCH
Confidence 67899999888655433 22233222 2222211 1 111 11234579999999987633211 10
Q ss_pred -----------CCCCccEEEeccchhhhc
Q 027749 172 -----------RTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 172 -----------~~~~l~~lVvDE~h~l~~ 189 (219)
.++.-..=|+||+|.++.
T Consensus 158 ~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 158 EEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 112233469999998776
No 161
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.32 E-value=1.3e-06 Score=76.81 Aligned_cols=134 Identities=17% Similarity=0.145 Sum_probs=88.8
Q ss_pred CChHHHHHHHHHHhC-----CCcEEEEcCCCCchhHHhHHHHHhh-hcc---C---CCceeEEEEcCCHHHHHHHHHHHH
Q 027749 55 KPSAIQQRAVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQT-VDT---S---SREVQALILSPTRELATQTEKVIL 122 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~-----~~~~lv~~~tG~GKT~~~~~~~~~~-~~~---~---~~~~~~lil~P~~~l~~q~~~~~~ 122 (219)
.+.|+|+.++..+.- ....|+....|-|||+..+-.+++. ... . ......||||| ..|..|+..++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHHHH
Confidence 457889888876652 2357889999999997665544432 110 0 11124999999 678899999998
Q ss_pred HhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHH----HHHc--CCCCCCCcc--EEEeccchhhhcc
Q 027749 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD----MIKR--KTLRTRAIK--LLVLDESDEMLSR 190 (219)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~----~l~~--~~~~~~~l~--~lVvDE~h~l~~~ 190 (219)
.......++|..++|....+-..+.+ ..+||||+|..-... -... ....+.++. .||+||||.+-+.
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~~~~L-~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKREISAKEL-RKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred HHHhhcceEEEEecCCccccCCHHHH-hhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 88777789999998877644333333 468999999754333 1111 112233443 4999999987654
No 162
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.30 E-value=1.1e-05 Score=72.53 Aligned_cols=66 Identities=18% Similarity=0.212 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHhCC-CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 027749 55 KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (219)
.+++.|..++..++.. ..++|.||+|+|||....-.+.+.+. . +.++++++||+..+.++.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~-~--g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK-R--GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH-c--CCCEEEEcCcHHHHHHHHHHHHh
Confidence 5689999999998866 67899999999999554433333333 2 34799999999999999998876
No 163
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.30 E-value=5e-06 Score=70.87 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=79.1
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhcccc-c----------ee--------EEEEECCcccHHHHHHhcC-----------
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFI-N----------IQ--------AHACVGGKSVGEDIRKLEH----------- 150 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~-~----------~~--------~~~~~~~~~~~~~~~~l~~----------- 150 (219)
.|++|||+|++..|-++.+.+.++.... . +. ...-........++..+..
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 5899999999999999999988776551 1 10 0000001112223333322
Q ss_pred --------------CCeEEEeChHHHHHHHHc------CCCCCCCccEEEeccchhhhccccHHHHHHHHHhC---CCC-
Q 027749 151 --------------GVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL---PPD- 206 (219)
Q Consensus 151 --------------~~~I~v~Tp~~l~~~l~~------~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~---~~~- 206 (219)
.+|||||+|-.|...+.. ..-.++.++++|+|.+|.|.-.+ ++.+..+++.+ |++
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCCC
Confidence 379999999999988874 12346889999999999877544 56666666665 331
Q ss_pred --------------------CeEEEEeecccCC
Q 027749 207 --------------------LQVCCPGSCFLFD 219 (219)
Q Consensus 207 --------------------~q~i~~SATl~~~ 219 (219)
+|+|++|+...|+
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe 228 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPE 228 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHH
Confidence 6999999987764
No 164
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.27 E-value=2e-06 Score=79.00 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.|+++|...--.+.+ .-|....||-|||+++.+|++-.....++ +-+|+..--||..=.+.+..+....|+++.+
T Consensus 138 ~~ydVQLiGgivLh~--G~IAEM~TGEGKTLvatlp~yLnAL~G~g---VHvVTvNDYLA~RDaewm~p~y~flGLtVg~ 212 (1025)
T PRK12900 138 VPYDVQLIGGIVLHS--GKISEMATGEGKTLVSTLPTFLNALTGRG---VHVVTVNDYLAQRDKEWMNPVFEFHGLSVGV 212 (1025)
T ss_pred cccchHHhhhHHhhc--CCccccCCCCCcchHhHHHHHHHHHcCCC---cEEEeechHhhhhhHHHHHHHHHHhCCeeee
Confidence 577787544433434 45789999999999999999887776543 6777777889988788888888888999998
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHHHH-HHHcC------CCCCCCccEEEeccchhhh
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRK------TLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~------~~~~~~l~~lVvDE~h~l~ 188 (219)
...+.+..++ +-...|||..+|...|-. +|+-+ ...-..+.+.||||+|-++
T Consensus 213 i~~~~~~~~R--r~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 213 ILNTMRPEER--REQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred eCCCCCHHHH--HHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 8665555443 344689999999876642 33211 1123567899999999755
No 165
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.27 E-value=2.6e-05 Score=72.89 Aligned_cols=121 Identities=18% Similarity=0.095 Sum_probs=76.9
Q ss_pred CChHHHHHHHHHHhCCC-cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEE
Q 027749 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~-~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (219)
.+++-|..++..++.++ -++|.|+.|+|||.. +-.+...+... +.+++.++||...+..+.+. .++..
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~~--G~~V~~~ApTGkAA~~L~e~-------tGi~a- 414 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEAA--GYEVRGAALSGIAAENLEGG-------SGIAS- 414 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEecCcHHHHHHHhhc-------cCcch-
Confidence 68999999999999865 478999999999954 33444444433 46699999998877655431 12110
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC-CCCCeEEEE
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVCCP 212 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~-~~~~q~i~~ 212 (219)
.|-.+|+.-.......+...++|||||+-++.. ..+..+++.. +...++|++
T Consensus 415 -----------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 415 -----------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred -----------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhCCCEEEEE
Confidence 133333221112223356678999999986543 3455666544 446777776
Q ss_pred e
Q 027749 213 G 213 (219)
Q Consensus 213 S 213 (219)
.
T Consensus 468 G 468 (988)
T PRK13889 468 G 468 (988)
T ss_pred C
Confidence 4
No 166
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.26 E-value=3.2e-06 Score=73.40 Aligned_cols=66 Identities=21% Similarity=0.278 Sum_probs=51.3
Q ss_pred CCChHHHHHHHHHHhCCC-cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 027749 54 EKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~-~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (219)
+.+.+-|..++....+.+ -.+++||+|+|||.....-+.+.+... .++++.+||+..++.+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhc
Confidence 466788999998877764 578999999999966655444454443 469999999999999998754
No 167
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.25 E-value=6.9e-06 Score=76.22 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=102.0
Q ss_pred CChHHHHHHHHHH--hC--CCcEEEEcCCCCchhHHhHHHHHhhhccCC-----Cce-eEEEEcCCHHHHHHHHHHHHHh
Q 027749 55 KPSAIQQRAVMPI--IK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSS-----REV-QALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 55 ~~~~~Q~~~~~~~--~~--~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-----~~~-~~lil~P~~~l~~q~~~~~~~~ 124 (219)
.++.+|++-++.+ ++ +-+.|+|-.+|-|||+-.+--+.......+ ..+ -.||||| ..|+-.+..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHh
Confidence 3467888877664 22 237899999999999765444443333221 012 2899999 56888999999999
Q ss_pred ccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCC
Q 027749 125 GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (219)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~ 204 (219)
... .++...+|+.......+..-++.+|+|++.+.+.+-+.. +.-.+-.|+|+||-|.|-+. ...+-+..+++.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 876 566667777666655555566789999999877642211 01123458999999987654 455556666664
Q ss_pred CCCeEEEEeecc
Q 027749 205 PDLQVCCPGSCF 216 (219)
Q Consensus 205 ~~~q~i~~SATl 216 (219)
.+ ..+.+|+|.
T Consensus 1128 a~-hRLILSGTP 1138 (1549)
T KOG0392|consen 1128 AN-HRLILSGTP 1138 (1549)
T ss_pred hc-ceEEeeCCC
Confidence 43 356677773
No 168
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.23 E-value=8.9e-06 Score=73.32 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=52.6
Q ss_pred CChHHHHHHHHHHh----CCCcEEEEcCCCCchhHHhHHHHHhhh---cc---------CC-------------------
Q 027749 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTV---DT---------SS------------------- 99 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~lv~~~tG~GKT~~~~~~~~~~~---~~---------~~------------------- 99 (219)
.|++.|...+..++ +..+.++..|||+|||++.+-..+... .. +.
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 68999988776654 456899999999999977654443322 10 00
Q ss_pred --------CceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 100 --------REVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 100 --------~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
..|+++|-.-|+....|+.+++++..-.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 1378899999999999999998776433
No 169
>PF13245 AAA_19: Part of AAA domain
Probab=98.23 E-value=7.1e-06 Score=53.12 Aligned_cols=52 Identities=25% Similarity=0.419 Sum_probs=38.1
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhcc-CCCceeEEEEcCCHHHHHHHHHHH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVI 121 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~ 121 (219)
++-++|.||.|+|||....-.+...+.. ...+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3446669999999996655555444421 112567999999999999998888
No 170
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.22 E-value=4.6e-05 Score=69.85 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=74.8
Q ss_pred CChHHHHHHHHHHhCC-CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEE
Q 027749 55 KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (219)
.+++-|+.++..+..+ +-++|.|+.|+|||... -.+...+... +..+++++||...+..+.+.. ++..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~--g~~V~~~ApTg~Aa~~L~~~~-------g~~a- 420 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAA--GYRVIGAALSGKAAEGLQAES-------GIES- 420 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhC--CCeEEEEeCcHHHHHHHHhcc-------CCce-
Confidence 5899999999998874 56899999999999443 3344444433 456999999988776654321 2211
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC-CCCCeEEEE
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVCCP 212 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~-~~~~q~i~~ 212 (219)
.|-.+++.-.......+...++|||||+-++... .+..+++.. +...++|++
T Consensus 421 -----------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~kliLV 473 (744)
T TIGR02768 421 -----------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGAKVVLV 473 (744)
T ss_pred -----------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEEE
Confidence 1222222111222223567889999999865533 344455532 345667766
Q ss_pred e
Q 027749 213 G 213 (219)
Q Consensus 213 S 213 (219)
.
T Consensus 474 G 474 (744)
T TIGR02768 474 G 474 (744)
T ss_pred C
Confidence 4
No 171
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.21 E-value=1.1e-05 Score=68.85 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=85.0
Q ss_pred CChHHHHHHHHHHhCC-----CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 55 KPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-----~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
.+-|+|.+.+-.+... ...++.-.+|.|||.-.+..++.. ..+...|+|+|+.++ .|+.+++..... -.
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae----~~ra~tLVvaP~VAl-mQW~nEI~~~T~-gs 257 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE----VDRAPTLVVAPTVAL-MQWKNEIERHTS-GS 257 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc----cccCCeeEEccHHHH-HHHHHHHHHhcc-Cc
Confidence 5578899877655432 246788889999995554444442 223349999999887 578899988776 35
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC-------------CCCCCccE--EEeccchhhhcc
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-------------LRTRAIKL--LVLDESDEMLSR 190 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~-------------~~~~~l~~--lVvDE~h~l~~~ 190 (219)
.++...+|.. ......++ .+++++.+|...+....+... ..+..+++ ||+||||.+-+.
T Consensus 258 lkv~~YhG~~-R~~nikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R 331 (791)
T KOG1002|consen 258 LKVYIYHGAK-RDKNIKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDR 331 (791)
T ss_pred eEEEEEeccc-ccCCHHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccc
Confidence 6666666543 33333333 468999999988877665311 12344444 999999987653
No 172
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.21 E-value=5.2e-06 Score=74.59 Aligned_cols=144 Identities=13% Similarity=0.105 Sum_probs=78.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH---Hhc---cccceeEEEEECCcccHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL---AIG---DFINIQAHACVGGKSVGED 144 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~ 144 (219)
-++-|.+.||+|||.||+-.++..=...+ -.+-|||||+.+.-.-++-... +.. .+.+.+...+.-.......
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG-~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~ 153 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYG-LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKF 153 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhC-ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHH
Confidence 47889999999999999876655333322 3568999999987665443331 111 1112333333222222222
Q ss_pred HHHhcCCCeEEEeChHHHHHH------HHcCCCCCCC--------------c-cEEEeccchhhhccccHHHHHHHHHhC
Q 027749 145 IRKLEHGVHVVSGTPGRVCDM------IKRKTLRTRA--------------I-KLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 145 ~~~l~~~~~I~v~Tp~~l~~~------l~~~~~~~~~--------------l-~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
...-.+.+.+++.|...+..- +.+......+ + -.+|+||-|+|... ......+...-
T Consensus 154 ~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i~~l~ 231 (985)
T COG3587 154 KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAIKQLN 231 (985)
T ss_pred hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHHHhhC
Confidence 222234677888776555322 2211111111 1 37999999998864 12222232221
Q ss_pred CCCCeEEEEeecccCC
Q 027749 204 PPDLQVCCPGSCFLFD 219 (219)
Q Consensus 204 ~~~~q~i~~SATl~~~ 219 (219)
..-++=+|||++.+
T Consensus 232 --pl~ilRfgATfkd~ 245 (985)
T COG3587 232 --PLLILRFGATFKDE 245 (985)
T ss_pred --ceEEEEecccchhh
Confidence 12367799998753
No 173
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.15 E-value=8.9e-06 Score=75.51 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=98.2
Q ss_pred CCChHHHHHHHHHHh----CCCcEEEEcCCCCchh---HHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 027749 54 EKPSAIQQRAVMPII----KGRDVIAQAQSGTGKT---SMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~----~~~~~lv~~~tG~GKT---~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (219)
..++.+|.+-++-++ ++.+.|+.-.+|-||| .+|+-.+.+..... +| .|+|+|...+. .+...+..+.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~--gp-flvvvplst~~-~W~~ef~~w~- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIH--GP-FLVVVPLSTIT-AWEREFETWT- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhcc--CC-eEEEeehhhhH-HHHHHHHHHh-
Confidence 467788888776654 6789999999999999 34444444443332 44 68888976654 4667777765
Q ss_pred ccceeEEEEECCcccHHHHHHhc----C-----CCeEEEeChHHHHHHHHcCCCCCCCc--cEEEeccchhhhccccHHH
Q 027749 127 FINIQAHACVGGKSVGEDIRKLE----H-----GVHVVSGTPGRVCDMIKRKTLRTRAI--KLLVLDESDEMLSRGFKDQ 195 (219)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~----~-----~~~I~v~Tp~~l~~~l~~~~~~~~~l--~~lVvDE~h~l~~~~~~~~ 195 (219)
.+++++++|.....+.++... . ..+++++|.+.++. ..-.++.+ .+++|||||+|-+.. ..
T Consensus 444 --~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk----Dk~~L~~i~w~~~~vDeahrLkN~~--~~ 515 (1373)
T KOG0384|consen 444 --DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK----DKAELSKIPWRYLLVDEAHRLKNDE--SK 515 (1373)
T ss_pred --hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc----cHhhhccCCcceeeecHHhhcCchH--HH
Confidence 689999999888776655542 1 47899999876653 22224444 479999999987653 33
Q ss_pred HHHHHHhCCCCCeEEEEeec
Q 027749 196 IYDVYRYLPPDLQVCCPGSC 215 (219)
Q Consensus 196 ~~~i~~~~~~~~q~i~~SAT 215 (219)
+...+..+.-+ ..+++|+|
T Consensus 516 l~~~l~~f~~~-~rllitgT 534 (1373)
T KOG0384|consen 516 LYESLNQFKMN-HRLLITGT 534 (1373)
T ss_pred HHHHHHHhccc-ceeeecCC
Confidence 44445555433 24556665
No 174
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.08 E-value=8.7e-06 Score=75.12 Aligned_cols=127 Identities=17% Similarity=0.208 Sum_probs=89.9
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.|+++|... .+.-...-|....||-|||+++.+|++......++ +-+|+.+--||..=.+.+..+....|+++.+
T Consensus 169 ~~yDVQliG--givLh~G~IAEM~TGEGKTLvAtlp~yLnAL~Gkg---VHvVTVNDYLA~RDaewmgply~fLGLsvg~ 243 (1112)
T PRK12901 169 VHYDVQLIG--GVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNG---VHVVTVNDYLAKRDSEWMGPLYEFHGLSVDC 243 (1112)
T ss_pred cccchHHhh--hhhhcCCceeeecCCCCchhHHHHHHHHHHHcCCC---cEEEEechhhhhccHHHHHHHHHHhCCceee
Confidence 567777443 33333446889999999999999999888777544 7777888889987777888888888999987
Q ss_pred EEC-CcccHHHHHHhcCCCeEEEeChHHHHH-HHHcC------CCCCCCccEEEeccchhhh
Q 027749 135 CVG-GKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRK------TLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 135 ~~~-~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~------~~~~~~l~~lVvDE~h~l~ 188 (219)
... ..+..+ ++-...|||..+|...|-. +|+-+ ......+.+.||||+|-++
T Consensus 244 i~~~~~~~~~--rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 244 IDKHQPNSEA--RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred cCCCCCCHHH--HHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 765 323333 3344589999999876642 33211 1123557899999999755
No 175
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=98.08 E-value=0.00011 Score=69.20 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=83.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhC-CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 027749 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (219)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 118 (219)
+++..++.....++ .+++-|..++..+.. ++-.+|.|+.|+|||.+ +-.+...+... +.+++-++||..-+..+.
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~~--G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEAA--GYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHHc--CCeEEEEcCcHHHHHHHH
Confidence 44555554444343 689999999998864 45689999999999933 33444444443 456999999988876654
Q ss_pred HHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHH
Q 027749 119 KVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (219)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~ 198 (219)
+.. ++.. .|-.+|+.-.......+..-++|||||+.++. ...+..
T Consensus 443 e~~-------Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~ 487 (1102)
T PRK13826 443 KEA-------GIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMAL 487 (1102)
T ss_pred Hhh-------CCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHH
Confidence 322 2221 12222221111122235566799999998654 345556
Q ss_pred HHHhCC-CCCeEEEEe
Q 027749 199 VYRYLP-PDLQVCCPG 213 (219)
Q Consensus 199 i~~~~~-~~~q~i~~S 213 (219)
+++..+ ...++|++.
T Consensus 488 Ll~~~~~~garvVLVG 503 (1102)
T PRK13826 488 FVEAVTRAGAKLVLVG 503 (1102)
T ss_pred HHHHHHhcCCEEEEEC
Confidence 666654 467777765
No 176
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=98.08 E-value=1.4e-05 Score=65.44 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 027749 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGD 126 (219)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (219)
+++-|.+++.. ..++++|.|+.|||||.+.+--+...+... ....+++++++|+..+.++.+++.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 36778888887 667999999999999987766666655544 3456799999999999999999987643
No 177
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=2.5e-05 Score=67.04 Aligned_cols=150 Identities=19% Similarity=0.252 Sum_probs=98.1
Q ss_pred CCCChHHHHHHHHHHhCCCcEEEEcCC-CCch--hHHhHHHHHhhhccC----------------------------CCc
Q 027749 53 FEKPSAIQQRAVMPIIKGRDVIAQAQS-GTGK--TSMIALTVCQTVDTS----------------------------SRE 101 (219)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~lv~~~t-G~GK--T~~~~~~~~~~~~~~----------------------------~~~ 101 (219)
-..+++.|.+.+....+.++++..-.+ +.|+ +..|.+.++.++... -..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 357899999999999998887654332 3344 346777777665321 013
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccce---eE------EEEECC--------cccHHHHHH-----------------
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINI---QA------HACVGG--------KSVGEDIRK----------------- 147 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~---~~------~~~~~~--------~~~~~~~~~----------------- 147 (219)
|++|||||+++-|-.+.+.+..++...+- .+ ..-+++ .+..++...
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 89999999999999999988777433210 00 000111 011111111
Q ss_pred -----h---cCCCeEEEeChHHHHHHHHcCC------CCCCCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 148 -----L---EHGVHVVSGTPGRVCDMIKRKT------LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 148 -----l---~~~~~I~v~Tp~~l~~~l~~~~------~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
+ ...++|+||+|-.|.-++.+.+ -.++.+.++|||.+|.++..+ ++.+..++++|
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHL 442 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHL 442 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHh
Confidence 1 1357999999999988887432 235778899999999888665 67788888886
No 178
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.97 E-value=2.4e-05 Score=62.11 Aligned_cols=86 Identities=21% Similarity=0.331 Sum_probs=67.9
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCc-ccHHHHHHhc-CCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGK-SVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 99 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
.+.|.+|||+..---|-.+.+.++.+... +..+..++..+ ...++...+. ....|.||||+++..++.++.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 35689999999988888888888876422 24444455444 6667766665 378999999999999999999999999
Q ss_pred cEEEeccch
Q 027749 177 KLLVLDESD 185 (219)
Q Consensus 177 ~~lVvDE~h 185 (219)
.+||||--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999865
No 179
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.95 E-value=0.00013 Score=51.87 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=13.0
Q ss_pred CCCcEEEEcCCCCchhHHhHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~ 89 (219)
+++.++|.|++|+|||.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~ 23 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKR 23 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHH
Confidence 346789999999999955433
No 180
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.92 E-value=7.2e-05 Score=69.57 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=96.5
Q ss_pred CChHHHHHHHHHHh----CCCcEEEEcCCCCchhHHhHHHHHhhhc--cCCCceeEEEEcCCHHHHHHHHHHHHHhcccc
Q 027749 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALILSPTRELATQTEKVILAIGDFI 128 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~lv~~~tG~GKT~~~~~~~~~~~~--~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (219)
.++.+|...+..+. ++-|.|+.-.+|-||| +-.+.++.++. ....+| -|||+||..+.+ |.=++++|+.
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKT-IQtISllAhLACeegnWGP-HLIVVpTsviLn-WEMElKRwcP-- 689 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKT-IQTISLLAHLACEEGNWGP-HLIVVPTSVILN-WEMELKRWCP-- 689 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccch-hHHHHHHHHHHhcccCCCC-ceEEeechhhhh-hhHHHhhhCC--
Confidence 44667877776543 4457899999999999 44444555553 334566 688889887654 5667788876
Q ss_pred ceeEEEEECCcccHHHHHHhcC---CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCC
Q 027749 129 NIQAHACVGGKSVGEDIRKLEH---GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~---~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~ 205 (219)
++.+..++|........+.-.. ...|-|++...+..-+. .+.-++-.|+|+||||++-++. ...++.++..-
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnfk-sqrWQAllnfn-- 764 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNFK-SQRWQALLNFN-- 764 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcchh-HHHHHHHhccc--
Confidence 5788888887765544433322 34566666544433221 1222456799999999988774 45566666552
Q ss_pred CCeEEEEeec
Q 027749 206 DLQVCCPGSC 215 (219)
Q Consensus 206 ~~q~i~~SAT 215 (219)
..+.++++.|
T Consensus 765 sqrRLLLtgT 774 (1958)
T KOG0391|consen 765 SQRRLLLTGT 774 (1958)
T ss_pred hhheeeecCC
Confidence 3467777776
No 181
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.90 E-value=7.4e-05 Score=61.71 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=87.6
Q ss_pred HCCCCCChHHHHHHHHHHhCCC--cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHH-------HH
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-------KV 120 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~--~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~-------~~ 120 (219)
-+|+..-+..|..|+..++... =+.+.|+.|+|||+-++.+.++.....+.-.++|+.=|+..+.+++- +.
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeK 302 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 302 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhh
Confidence 4577777888999999888653 36688999999998888888887777666677888888766653221 11
Q ss_pred HHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCC----------ccEEEeccchhhhcc
Q 027749 121 ILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRA----------IKLLVLDESDEMLSR 190 (219)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~----------l~~lVvDE~h~l~~~ 190 (219)
+..|++.. ...-+.-...+.| +-+.+..++....+.+.. =.+||+|||.++.
T Consensus 303 m~PWmq~i-----------~DnLE~L~~~~~~-----~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT-- 364 (436)
T COG1875 303 MGPWMQAI-----------FDNLEVLFSPNEP-----GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT-- 364 (436)
T ss_pred ccchHHHH-----------HhHHHHHhccccc-----chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC--
Confidence 11111110 0000000001112 133333444333322211 2489999999876
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEe
Q 027749 191 GFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 191 ~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..++..++....+...++++.
T Consensus 365 --pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 --PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred --HHHHHHHHHhccCCCEEEEcC
Confidence 578899999888877777653
No 182
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.86 E-value=0.00038 Score=49.79 Aligned_cols=25 Identities=24% Similarity=0.510 Sum_probs=17.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
++.+++.||+|+|||. .+-.++..+
T Consensus 19 ~~~v~i~G~~G~GKT~-l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTT-LARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHH-HHHHHHHHh
Confidence 6789999999999994 333344433
No 183
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.86 E-value=9.4e-05 Score=62.39 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHH------hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 027749 56 PSAIQQRAVMPI------IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (219)
Q Consensus 56 ~~~~Q~~~~~~~------~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (219)
+++-|++++..+ ..+.++.|.|+.|+||| |++-.+...... .+..+++++||...|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs--~l~~~i~~~~~~-~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKS--FLIKAIIDYLRS-RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChh--HHHHHHHHHhcc-ccceEEEecchHHHHHhc
Confidence 567789998887 67788999999999999 444333333332 245699999998777655
No 184
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.83 E-value=4.3e-05 Score=65.77 Aligned_cols=73 Identities=23% Similarity=0.277 Sum_probs=55.1
Q ss_pred CChHHHHHHHHHHhCC-----CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 55 KPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-----~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
.|...|-+||..+..| +.-.+.|.||||||+...- ++.... .| +||++|.+.||.|++.+++.+.....
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~An-VI~~~~----rP-tLV~AhNKTLAaQLy~Efk~fFP~Na 85 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMAN-VIAKVQ----RP-TLVLAHNKTLAAQLYSEFKEFFPENA 85 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHH-HHHHhC----CC-eEEEecchhHHHHHHHHHHHhCcCcc
Confidence 6778888888876543 4678899999999955433 233222 22 99999999999999999999988765
Q ss_pred eeEE
Q 027749 130 IQAH 133 (219)
Q Consensus 130 ~~~~ 133 (219)
+...
T Consensus 86 VEYF 89 (663)
T COG0556 86 VEYF 89 (663)
T ss_pred eEEE
Confidence 5544
No 185
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.83 E-value=0.00014 Score=66.60 Aligned_cols=143 Identities=16% Similarity=0.183 Sum_probs=88.1
Q ss_pred cCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCc-EEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHH
Q 027749 37 AMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRD-VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (219)
Q Consensus 37 ~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~-~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 115 (219)
...+.+.+.+. -...++..|++|+..++..++ .+|.|=+|+|||..... +++.+... +.++|..+-|+..+.
T Consensus 655 ~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~~--gkkVLLtsyThsAVD 727 (1100)
T KOG1805|consen 655 SKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVAL--GKKVLLTSYTHSAVD 727 (1100)
T ss_pred ccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHHc--CCeEEEEehhhHHHH
Confidence 44456665554 223578889999998886654 78899999999955443 44555444 345999999999888
Q ss_pred HHHHHHHHhcccc---c--eeE------EEEECCc--ccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEec
Q 027749 116 QTEKVILAIGDFI---N--IQA------HACVGGK--SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLD 182 (219)
Q Consensus 116 q~~~~~~~~~~~~---~--~~~------~~~~~~~--~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvD 182 (219)
.+.-.+..+.-.. | ..+ .+..... ..-+...+..+...|+.+|--.+.+-+. ..+.++|.|||
T Consensus 728 NILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiD 803 (1100)
T KOG1805|consen 728 NILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIID 803 (1100)
T ss_pred HHHHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEc
Confidence 7777666543221 0 000 0001111 1112233444567899998654443332 23568999999
Q ss_pred cchhhhcc
Q 027749 183 ESDEMLSR 190 (219)
Q Consensus 183 E~h~l~~~ 190 (219)
||-++..+
T Consensus 804 EASQI~lP 811 (1100)
T KOG1805|consen 804 EASQILLP 811 (1100)
T ss_pred cccccccc
Confidence 99987754
No 186
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.80 E-value=7.5e-05 Score=66.32 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=92.9
Q ss_pred HHHHHHHHH----HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhccccceeE
Q 027749 58 AIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIGDFINIQA 132 (219)
Q Consensus 58 ~~Q~~~~~~----~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (219)
.+|.+.+.. .-+|-+.|+.-.+|-|||.-.+..+.+...... .+| .|+|+|...| +.+..++.+++. .+.+
T Consensus 570 EYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGP-FLVVtpaStL-~NWaqEisrFlP--~~k~ 645 (1185)
T KOG0388|consen 570 EYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGP-FLVVTPASTL-HNWAQEISRFLP--SFKV 645 (1185)
T ss_pred HHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCc-eEEeehHHHH-hHHHHHHHHhCc--ccee
Confidence 455555443 347889999999999999655544444443332 355 6888997666 557777777765 4778
Q ss_pred EEEECCcccHHHHHHh---------cCCCeEEEeChHHHHHHHHcCCCCCCCc--cEEEeccchhhhccccHHHHHHHHH
Q 027749 133 HACVGGKSVGEDIRKL---------EHGVHVVSGTPGRVCDMIKRKTLRTRAI--KLLVLDESDEMLSRGFKDQIYDVYR 201 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l---------~~~~~I~v~Tp~~l~~~l~~~~~~~~~l--~~lVvDE~h~l~~~~~~~~~~~i~~ 201 (219)
+...|+.+.....++. ..+.+|+|+|.+.+..- .-.++++ .|.|+|||..+-+.. ......++.
T Consensus 646 lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD----eky~qkvKWQYMILDEAQAIKSSs-S~RWKtLLs 720 (1185)
T KOG0388|consen 646 LPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD----EKYLQKVKWQYMILDEAQAIKSSS-SSRWKTLLS 720 (1185)
T ss_pred ecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech----HHHHHhhhhhheehhHHHHhhhhh-hhHHHHHhh
Confidence 8888887755544441 23578888886544310 0112333 479999999876543 455666665
Q ss_pred hCCCCCeEEEEeecc
Q 027749 202 YLPPDLQVCCPGSCF 216 (219)
Q Consensus 202 ~~~~~~q~i~~SATl 216 (219)
.- .+..+++++|.
T Consensus 721 F~--cRNRLLLTGTP 733 (1185)
T KOG0388|consen 721 FK--CRNRLLLTGTP 733 (1185)
T ss_pred hh--ccceeeecCCc
Confidence 52 23367777773
No 187
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.80 E-value=0.00014 Score=58.70 Aligned_cols=45 Identities=16% Similarity=0.178 Sum_probs=34.2
Q ss_pred CCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeec
Q 027749 170 TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSC 215 (219)
Q Consensus 170 ~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 215 (219)
.-....++.+|+||||.|... .+..+.+.++..+....+++.+.-
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcny 168 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNY 168 (346)
T ss_pred CCCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCC
Confidence 345567899999999998865 377888888888777777666543
No 188
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.75 E-value=0.00027 Score=65.92 Aligned_cols=135 Identities=19% Similarity=0.144 Sum_probs=86.6
Q ss_pred CCChHHHHHHHHHHh-----CCCcEEEEcCCCCchhHHhHHHHHhhhccCCC-ceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 54 EKPSAIQQRAVMPII-----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR-EVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~-----~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~-~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
..+.++|.+.++.+. .+.+.++...+|.|||+..+..+.+....... .+.+++++|+. ++.++.+++.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s-~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPAS-LLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHH-HHHHHHHHHhhhCcc
Confidence 356778888776543 35678888999999996655544442322222 34699999964 556788888777665
Q ss_pred cceeEEEEECCccc----HHHHHHhcCC-----CeEEEeChHHHHHHH-HcCCCCCCCccEEEeccchhhhcc
Q 027749 128 INIQAHACVGGKSV----GEDIRKLEHG-----VHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 128 ~~~~~~~~~~~~~~----~~~~~~l~~~-----~~I~v~Tp~~l~~~l-~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
... +....|.... .+....+... .+++++|.+.+.... ....+.-....++|+||+|.+-+.
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh
Confidence 433 5556665541 3333333322 789999998877632 112233345678999999997655
No 189
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=0.00054 Score=58.08 Aligned_cols=119 Identities=18% Similarity=0.105 Sum_probs=64.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhcc--CCCceeEEEEcCC-HHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDT--SSREVQALILSPT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~--~~~~~~~lil~P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (219)
+.+++.||||+|||....-.+...... .....-+++-+.+ +.-+..+ ++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~------------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA------------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe-------------
Confidence 468899999999996654333222211 1122223444443 2323222 44444443443321
Q ss_pred hcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc-cHHHHHHHHHhCCCC-CeEEEEeeccc
Q 027749 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPD-LQVCCPGSCFL 217 (219)
Q Consensus 148 l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~-~~~~~~~i~~~~~~~-~q~i~~SATl~ 217 (219)
+-++..+...+.. ..+.++|+||++.++.... ....+..+++..... .-++.+|||..
T Consensus 239 --------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 239 --------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred --------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 1235555554443 3568899999998765321 234556666655433 45788999864
No 190
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.70 E-value=6.5e-05 Score=68.77 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=89.8
Q ss_pred CCChHHHHHHHHHHh---C-CCcEEEEcCCCCchhHHhHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhcccc
Q 027749 54 EKPSAIQQRAVMPII---K-GRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIGDFI 128 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~---~-~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (219)
..+.++|...+..+. + .-+-|+.-.+|-|||..-+.-+.+.+...+ .+| -+|+||+..|.+ +..++.++..
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP-~LvivPlstL~N-W~~Ef~kWaP-- 468 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGP-FLIIVPLSTLVN-WSSEFPKWAP-- 468 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCC-eEEeccccccCC-chhhcccccc--
Confidence 367788888776543 2 347889999999999555444444444333 344 688999998876 5556666643
Q ss_pred ceeEEEEECCcccHHHHHH--hcCCCeEEEeChHHHHHHHHcCCCCCCCc--cEEEeccchhhhccccHHHHHHHHHhCC
Q 027749 129 NIQAHACVGGKSVGEDIRK--LEHGVHVVSGTPGRVCDMIKRKTLRTRAI--KLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~--l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l--~~lVvDE~h~l~~~~~~~~~~~i~~~~~ 204 (219)
.+..+...|.......... .....+|+++|.+.+.+ ..-.++.+ .|+||||-|+|-+. ...+...+...-
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y 542 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHY 542 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccch--hhHHHHHhhccc
Confidence 2444444443332222111 12578999999876553 22223444 47999999998764 344444444322
Q ss_pred CCCeEEEEeec
Q 027749 205 PDLQVCCPGSC 215 (219)
Q Consensus 205 ~~~q~i~~SAT 215 (219)
.....+++++|
T Consensus 543 ~~q~RLLLTGT 553 (1157)
T KOG0386|consen 543 RAQRRLLLTGT 553 (1157)
T ss_pred cchhhhhhcCC
Confidence 22335555555
No 191
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.69 E-value=4.2e-05 Score=66.40 Aligned_cols=172 Identities=12% Similarity=-0.025 Sum_probs=112.1
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 027749 44 LLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (219)
Q Consensus 44 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (219)
+...+.++.-+....+|.+++..+.+|++.++.-.+.+||.++|.+.....+..... ...++..|+.++++.......-
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-TNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-cceecchhHHHHhhccCCceEE
Confidence 444555566678899999999999999999999999999999999887776654433 3478888888887755443321
Q ss_pred hcccc---ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC----CCCCCccEEEeccchhhhccccH---
Q 027749 124 IGDFI---NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT----LRTRAIKLLVLDESDEMLSRGFK--- 193 (219)
Q Consensus 124 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~----~~~~~l~~lVvDE~h~l~~~~~~--- 193 (219)
..... .-.++..+.+.+........+.+..++++.|+.....+.-+. ..+-.+.++++||+|.-. .-|.
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~-~~~~~~~ 432 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYL-FPTKALA 432 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeee-cchhhHH
Confidence 11111 122333445555555555556789999999988876443322 223345679999999533 2233
Q ss_pred -HHHHHHHHhC-----CCCCeEEEEeeccc
Q 027749 194 -DQIYDVYRYL-----PPDLQVCCPGSCFL 217 (219)
Q Consensus 194 -~~~~~i~~~~-----~~~~q~i~~SATl~ 217 (219)
..++++.+-+ ..+.|++-.|||+.
T Consensus 433 ~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K 462 (1034)
T KOG4150|consen 433 QDQLRALSDLIKGFEASINMGVYDGDTPYK 462 (1034)
T ss_pred HHHHHHHHHHHHHHHhhcCcceEeCCCCcC
Confidence 2333333322 33678888888874
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.67 E-value=0.00025 Score=50.28 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
+..+++.||+|+|||..... ++..+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCCC--CCEEEECCEEcc
Confidence 56789999999999944332 333333322 236666665543
No 193
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=97.66 E-value=0.001 Score=57.46 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=47.0
Q ss_pred CCCCChHHHHHHHHHHh----CCCcEEEEcCCCCchhHHhHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 52 GFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~----~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
-+...+|-|..=+..+. .+.+.++..|+|+|||.+.+..++......+ .-.+.|+..-|..-.+....+++.+
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 34556777766554433 4578999999999999666554444443333 3456777777776666666666554
No 194
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.64 E-value=0.00024 Score=65.22 Aligned_cols=108 Identities=16% Similarity=0.183 Sum_probs=73.1
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhccccceeE
Q 027749 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (219)
..+++-|++++.+. ..+++|.|+.|||||.+...-+.+.+... -...++++++.|+..|.++.+++.++....
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~---- 76 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS---- 76 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc----
Confidence 35889999998653 46899999999999977665555555432 234579999999999999999998864310
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHH-HHHcCC--CCCCCccEEEeccchh
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKT--LRTRAIKLLVLDESDE 186 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~~--~~~~~l~~lVvDE~h~ 186 (219)
...+.|+|-+.|.. +++... ..+. -.+-|+|+.+.
T Consensus 77 ------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred ------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 12467888888775 333221 1111 12456777654
No 195
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.62 E-value=0.00044 Score=60.48 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=51.2
Q ss_pred HHHHHHHHHHh-----CC----CcEEEEcCCCCchhHHhHHHHHhhh-ccCCCceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 58 AIQQRAVMPII-----KG----RDVIAQAQSGTGKTSMIALTVCQTV-DTSSREVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 58 ~~Q~~~~~~~~-----~~----~~~lv~~~tG~GKT~~~~~~~~~~~-~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
|||+.++-.+. .| +.+++..|=|.|||.......+..+ .....+..++++++++..|..+++.+..+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 57777776655 22 3588899999999955544334333 34445678999999999999999999887655
No 196
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=97.61 E-value=0.0006 Score=62.58 Aligned_cols=140 Identities=12% Similarity=0.021 Sum_probs=80.7
Q ss_pred CcEEEEcCCCCchhHHh---HHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccc----ceeEEEEECCcccHH
Q 027749 71 RDVIAQAQSGTGKTSMI---ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI----NIQAHACVGGKSVGE 143 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~---~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 143 (219)
-..|+..-+|-|||+-. +..++..-. .+-.++|||+|...+ ..++.++.+|.... .+.+..+..-.....
T Consensus 697 sGcILAHcMGLGKTlQVvtflhTvL~c~k--lg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~ 773 (1567)
T KOG1015|consen 697 SGCILAHCMGLGKTLQVVTFLHTVLLCDK--LGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELATVKRPEE 773 (1567)
T ss_pred cchHHHHhhcccceehhhHHHHHHHHhhc--cCCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhhhccChHH
Confidence 35777888999999543 333332222 223469999997655 56899999998753 345554444444344
Q ss_pred HHHH---hcCCCeEEEeChHHHHHHHHcCCCC-------------CCCccEEEeccchhhhccccHHHHHHHHHhCCCCC
Q 027749 144 DIRK---LEHGVHVVSGTPGRVCDMIKRKTLR-------------TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (219)
Q Consensus 144 ~~~~---l~~~~~I~v~Tp~~l~~~l~~~~~~-------------~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~ 207 (219)
+... +.+.-.|.|.-.+.+..+-..+... -..-++||+||+|.+-+. ...+...+..+. ..
T Consensus 774 R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~ir-tk 850 (1567)
T KOG1015|consen 774 RSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIR-TK 850 (1567)
T ss_pred HHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHH-hh
Confidence 4433 3344456665565554443322211 123479999999987665 233444444432 23
Q ss_pred eEEEEeecc
Q 027749 208 QVCCPGSCF 216 (219)
Q Consensus 208 q~i~~SATl 216 (219)
+.|++++|.
T Consensus 851 RRI~LTGTP 859 (1567)
T KOG1015|consen 851 RRIILTGTP 859 (1567)
T ss_pred eeEEeecCc
Confidence 467777763
No 197
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.61 E-value=0.00031 Score=63.88 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=64.3
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhccccceeEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (219)
.+++-|++++.+. ..+++|.|+.|||||.+...-+.+.+...+ ...++++++.|+..|.++.+++.......
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~----- 74 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK----- 74 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc-----
Confidence 4788899998653 468899999999999777666666554322 34579999999999999999997764210
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHH
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD 164 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~ 164 (219)
....+.|+|.+.|..
T Consensus 75 ----------------~~~~v~i~TfHS~~~ 89 (672)
T PRK10919 75 ----------------EARGLMISTFHTLGL 89 (672)
T ss_pred ----------------cccCcEEEcHHHHHH
Confidence 012467888888875
No 198
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.60 E-value=0.00047 Score=63.33 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=73.0
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhccccceeEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (219)
.+++-|++++.+. ..+++|.|+.|||||.+...-+.+.+... -...++++|+-|+..|.++.+++.++....
T Consensus 9 ~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~----- 81 (721)
T PRK11773 9 SLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS----- 81 (721)
T ss_pred hcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC-----
Confidence 5899999998653 46899999999999977665555554432 234569999999999999999998764310
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHH-HHHcCCCCCC-CccEEEeccchh
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTLRTR-AIKLLVLDESDE 186 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~~~~~~-~l~~lVvDE~h~ 186 (219)
...+.|+|-+.|.. +++....... .-.+-|+|+.++
T Consensus 82 -----------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~~f~i~d~~d~ 119 (721)
T PRK11773 82 -----------------QGGMWVGTFHGLAHRLLRAHWQDANLPQDFQILDSDDQ 119 (721)
T ss_pred -----------------CCCCEEEcHHHHHHHHHHHHHHHhCCCCCCeecCHHHH
Confidence 12467899888876 3333211000 112457787664
No 199
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.58 E-value=0.00079 Score=65.77 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=46.0
Q ss_pred CChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhH--HHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 027749 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIA--LTVCQTVDTSSREVQALILSPTRELATQTE 118 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~--~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 118 (219)
.+++-|..++..++.+ +-++|.|..|+|||...- +.++..+. ...+..++.++||...+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~-e~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP-ESERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh-hccCceEEEEechHHHHHHHH
Confidence 6899999999998854 679999999999995532 22222222 223466889999998887664
No 200
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=97.55 E-value=0.00098 Score=59.46 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=84.9
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccc--ceeEEEEECCcccHHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI--NIQAHACVGGKSVGEDIR 146 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 146 (219)
+.+-.++..|--.|||+... +++..+...-.+.++++++|....++.+++++....+.. +-.+....| ... ..
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i 327 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SF 327 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EE
Confidence 45678999999999997665 666666655557889999999999999999998775532 111111111 111 01
Q ss_pred HhcCC--CeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC-CCCCeEEEEeecccC
Q 027749 147 KLEHG--VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVCCPGSCFLF 218 (219)
Q Consensus 147 ~l~~~--~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~-~~~~q~i~~SATl~~ 218 (219)
.+.++ ..|.++|. -..+.+.=..++++|||||+-+-+. .+..++-.+ ..++++|++|.|-+.
T Consensus 328 ~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 328 SFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred EecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCCC
Confidence 12223 25666642 0122334457899999999976643 334444333 237899999988543
No 201
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.53 E-value=0.0012 Score=65.17 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=74.1
Q ss_pred CChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhHHHHHhhhc--cCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~~~~~~~~~--~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.+++.|+.++..++.+ +-++|.|..|+|||... -.++..+. ....+..++.++||...+..+.+ . ++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e----~----Gi 1037 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS----A----GV 1037 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHHHh----c----Cc
Confidence 6899999999998875 56899999999999443 23333332 12234568889999988876543 1 22
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHH----cCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCC-
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK----RKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP- 205 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~----~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~- 205 (219)
.. .|-.+|+.... +.......-++|||||+-++. ...+..+++..+.
T Consensus 1038 ~A------------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~~~~~~ 1089 (1747)
T PRK13709 1038 DA------------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALIAAG 1089 (1747)
T ss_pred ch------------------------hhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHHhhhcC
Confidence 11 12222222110 111112234789999998654 3455566666553
Q ss_pred CCeEEEEe
Q 027749 206 DLQVCCPG 213 (219)
Q Consensus 206 ~~q~i~~S 213 (219)
+.++|++.
T Consensus 1090 garvVLVG 1097 (1747)
T PRK13709 1090 GGRAVSSG 1097 (1747)
T ss_pred CCEEEEec
Confidence 57777764
No 202
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.51 E-value=0.0015 Score=59.53 Aligned_cols=70 Identities=23% Similarity=0.226 Sum_probs=52.8
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
..+++-|++++..- ..+++|.|+.|||||.+..--+...+... ..+.++++++.++..|..+.+++....
T Consensus 195 ~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 47899999988543 35789999999999976655444444332 234479999999999999999987654
No 203
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=97.50 E-value=8.5e-05 Score=55.93 Aligned_cols=122 Identities=14% Similarity=0.183 Sum_probs=53.3
Q ss_pred EEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHH-HHhcCCC
Q 027749 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI-RKLEHGV 152 (219)
Q Consensus 74 lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~ 152 (219)
++.|+-|-|||.+.-+.+...+... ..+++|.+|+.+-++.+++.+..-.+..+++... ....... .....+.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~--~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~ 74 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG--KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEK----KKRIGQIIKLRFNKQ 74 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC------------------------------CC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc--CceEEEecCCHHHHHHHHHHHHhhcccccccccc----ccccccccccccccc
Confidence 5789999999955555443333332 2569999999999998888776655544443300 0000000 0111245
Q ss_pred eEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 153 ~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
.|-+..|+.+... ....+++|||||=.+- ...+..+++..+ .++||.|+
T Consensus 75 ~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~~----~vv~stTi 123 (177)
T PF05127_consen 75 RIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRFP----RVVFSTTI 123 (177)
T ss_dssp C--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCSS----EEEEEEEB
T ss_pred eEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhCC----EEEEEeec
Confidence 6777778654422 1235789999996543 455556654433 56777775
No 204
>PRK04296 thymidine kinase; Provisional
Probab=97.50 E-value=0.00036 Score=53.41 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=23.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
.-.++.||+|+|||...+- ++.++... +.+++++-|
T Consensus 3 ~i~litG~~GsGKTT~~l~-~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQ-RAYNYEER--GMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHH-HHHHHHHc--CCeEEEEec
Confidence 3468899999999954443 44444433 345777755
No 205
>PHA02533 17 large terminase protein; Provisional
Probab=97.46 E-value=0.0018 Score=57.21 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc--eeE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQA 132 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~--~~~ 132 (219)
.+.|+|...+..+..++-.++..+=..|||.+....++..+... .+..+++++|+...+..+++.++....... ...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 57899999998876667778999999999977665444433322 245799999999999999988876544321 110
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
.... .......+.+++.|.+.|.. .+...=....++|+||+|.+-+
T Consensus 138 ~i~~----~~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 138 GIVE----WNKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred ceee----cCccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC
Confidence 0000 00111223467777665532 1111223466899999997543
No 206
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.46 E-value=0.00093 Score=58.01 Aligned_cols=105 Identities=10% Similarity=0.161 Sum_probs=54.9
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcC
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (219)
..+++.||+|+|||.. +..+...+.....+.+++++.. ..+..+....+..
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~~~~~~~v~yi~~-~~~~~~~~~~~~~--------------------------- 199 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILEKNPNAKVVYVTS-EKFTNDFVNALRN--------------------------- 199 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHc---------------------------
Confidence 4589999999999933 2334444444333445666633 3444333322211
Q ss_pred CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc-cHHHHHHHHHhCCC-CCeEEEEeecccC
Q 027749 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPP-DLQVCCPGSCFLF 218 (219)
Q Consensus 151 ~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~-~~~~~~~i~~~~~~-~~q~i~~SATl~~ 218 (219)
+ +.+.+... +...++|++||+|.+.... ....+..+++.+.. ..+ ++++++.++
T Consensus 200 ~------~~~~~~~~-------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~-iiits~~~p 255 (450)
T PRK00149 200 N------TMEEFKEK-------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQ-IVLTSDRPP 255 (450)
T ss_pred C------cHHHHHHH-------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCc-EEEECCCCH
Confidence 0 11222222 2246799999999876432 23445555554422 334 555555443
No 207
>PRK08181 transposase; Validated
Probab=97.45 E-value=0.0017 Score=52.38 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=31.2
Q ss_pred hHHHHHHHH----HHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 027749 57 SAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (219)
Q Consensus 57 ~~~Q~~~~~----~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (219)
...|..++. .+..+++++++||+|+|||.... .+...+... +..++|+ +..+|+.++
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~--g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIEN--GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHHc--CCceeee-eHHHHHHHH
Confidence 445555442 23467899999999999993332 233333332 2335444 334444443
No 208
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.43 E-value=0.0004 Score=60.81 Aligned_cols=135 Identities=12% Similarity=0.108 Sum_probs=71.9
Q ss_pred EEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH-H----Hhc--cc-----cceeEEEEECCcccH
Q 027749 75 AQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI-L----AIG--DF-----INIQAHACVGGKSVG 142 (219)
Q Consensus 75 v~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~-~----~~~--~~-----~~~~~~~~~~~~~~~ 142 (219)
....||+|||++....+++..... -..-|+.|.....++.-..-+ . +++ .. ..+.+..+
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg--yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv------- 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG--YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV------- 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc--hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee-------
Confidence 467899999987766666655432 223555555444433222211 0 000 00 01111111
Q ss_pred HHHHHhcCCCeEEEeChHHHHHHHHcC---CC---CCCCccE-EEeccchhhhccc-------------cHHHHHHHHHh
Q 027749 143 EDIRKLEHGVHVVSGTPGRVCDMIKRK---TL---RTRAIKL-LVLDESDEMLSRG-------------FKDQIYDVYRY 202 (219)
Q Consensus 143 ~~~~~l~~~~~I~v~Tp~~l~~~l~~~---~~---~~~~l~~-lVvDE~h~l~~~~-------------~~~~~~~i~~~ 202 (219)
........+..|.++|.+.|...+.+. .+ ++.+.++ ++-||+|++.... +...+..-++.
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~ 152 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ 152 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc
Confidence 111223456899999999998766542 22 3455554 6779999987531 11222222222
Q ss_pred CCCCCeEEEEeecccCC
Q 027749 203 LPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 203 ~~~~~q~i~~SATl~~~ 219 (219)
.++.-++.+|||.|.+
T Consensus 153 -nkd~~~lef~at~~k~ 168 (812)
T COG3421 153 -NKDNLLLEFSATIPKE 168 (812)
T ss_pred -CCCceeehhhhcCCcc
Confidence 3456688999999853
No 209
>PRK05642 DNA replication initiation factor; Validated
Probab=97.41 E-value=0.00051 Score=54.36 Aligned_cols=45 Identities=11% Similarity=0.219 Sum_probs=30.0
Q ss_pred CCccEEEeccchhhhcc-ccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 174 RAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
.++++||+|++|.+... .....+..+++.+......++++++.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 35578999999976533 3456677887776554445677776543
No 210
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.41 E-value=0.0029 Score=63.81 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=81.1
Q ss_pred CChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeE
Q 027749 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (219)
.+++-|..++..++.+ +-.+|.|+.|+|||.. +-.+...+... +..++.++||...+..+.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~~--G~~V~~lAPTgrAA~~L~e~~g~~A------- 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASEQ--GYEIQIITAGSLSAQELRQKIPRLA------- 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHhcchh-------
Confidence 5788999999998865 5688999999999933 33444444443 4579999999988877666432110
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC-CCCCeEEE
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVCC 211 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~-~~~~q~i~ 211 (219)
.+.......+..+ .-..|...|+ +....+..-++|||||+.++. ...+..+++.. +.+.++|+
T Consensus 499 ------~Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 499 ------STFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred ------hhHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCEEEE
Confidence 0000111111111 1122333333 222334567899999998654 45677777665 35778887
Q ss_pred Ee
Q 027749 212 PG 213 (219)
Q Consensus 212 ~S 213 (219)
+.
T Consensus 563 vG 564 (1960)
T TIGR02760 563 LN 564 (1960)
T ss_pred Ec
Confidence 65
No 211
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.40 E-value=0.0007 Score=61.73 Aligned_cols=127 Identities=17% Similarity=0.240 Sum_probs=92.9
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.|+.+| .+-.+.-...-+....||-|||++..+|+.-.....++ +.+|+-..-|+..-.+....+....++++..
T Consensus 80 ~~~dVQ--liG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkg---VhvVTvNdYLA~RDae~m~~l~~~LGlsvG~ 154 (822)
T COG0653 80 RHFDVQ--LLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKG---VHVVTVNDYLARRDAEWMGPLYEFLGLSVGV 154 (822)
T ss_pred ChhhHH--HhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCC---cEEeeehHHhhhhCHHHHHHHHHHcCCceee
Confidence 566666 44444444557889999999999999998777766543 7888888889998888888888888999998
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHHHH-HHH-c-----CCCCCCCccEEEeccchhhh
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIK-R-----KTLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~-~-----~~~~~~~l~~lVvDE~h~l~ 188 (219)
...+.+..++... ..|+|..+|...|-. .+. + .......+.+-|+||+|-++
T Consensus 155 ~~~~m~~~ek~~a--Y~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 155 ILAGMSPEEKRAA--YACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred ccCCCChHHHHHH--HhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 8888776665444 378999999876632 221 1 11223457899999999655
No 212
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.35 E-value=0.0014 Score=56.21 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=23.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEc
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (219)
..+++.|++|+|||... ..+...+.....+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 35789999999999333 34445554433344566664
No 213
>PRK06893 DNA replication initiation factor; Validated
Probab=97.34 E-value=0.00064 Score=53.59 Aligned_cols=45 Identities=11% Similarity=0.197 Sum_probs=30.3
Q ss_pred CCccEEEeccchhhhcc-ccHHHHHHHHHhCCC-CCeEEEEeecccC
Q 027749 174 RAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVCCPGSCFLF 218 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~-~~q~i~~SATl~~ 218 (219)
.+.++||+||+|.+... .+...+..+++.... +.+++++|++.++
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p 136 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSP 136 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCCh
Confidence 46789999999987633 334456666665543 4567788887654
No 214
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.33 E-value=0.0021 Score=47.08 Aligned_cols=38 Identities=16% Similarity=0.334 Sum_probs=22.4
Q ss_pred EEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
+++.|++|+|||..... ++..+... +..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~-i~~~~~~~--~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ-LALNIATK--GGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHH-HHHHHHhc--CCEEEEEECCcch
Confidence 68999999999954433 33333222 3346666554443
No 215
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=97.31 E-value=0.0019 Score=59.51 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=73.0
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhccccceeE
Q 027749 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIGDFINIQA 132 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (219)
..+++-|.+++.+. ..+++|.|+.|||||.+..--+.+.+...+ ..-++++++-|+..+.++.+++.++...
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~----- 75 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGP----- 75 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhcc-----
Confidence 35789999998753 468999999999999776665555554322 2346999999999999999999776421
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHH-HHHcCCCCCC-CccEEEeccchh
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTLRTR-AIKLLVLDESDE 186 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~~~~~~-~l~~lVvDE~h~ 186 (219)
...++.|+|-+.|.. ++........ .-.+-|+|+.+.
T Consensus 76 -----------------~~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 76 -----------------VAEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred -----------------ccCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 013577888888876 3332111000 122446777663
No 216
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.30 E-value=0.0021 Score=62.43 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEE
Q 027749 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (219)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (219)
.|+-|.+++. ..+++++|.|..|||||.+..--++..+......-++++|+-|+..+.++.+++.+.....--.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~---- 75 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQ---- 75 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc----
Confidence 5788999987 4688999999999999977666666655443333469999999999999999997654321000
Q ss_pred ECCcccHHHHHHhcCCCeEEEeChHHHHH-HHHcCCCCCCCc--cEEEeccchh
Q 027749 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTLRTRAI--KLLVLDESDE 186 (219)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~-~l~~~~~~~~~l--~~lVvDE~h~ 186 (219)
........+.+..-...-|+|-+.|.. ++++.. ..-++ .+=|.||...
T Consensus 76 --~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~-~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 --EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHY-YLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred --CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhh-hhcCCCCCceeCCHHHH
Confidence 000011111122224567999999986 444432 12222 3446888775
No 217
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=97.28 E-value=0.0013 Score=56.12 Aligned_cols=136 Identities=16% Similarity=0.160 Sum_probs=77.1
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHH-HHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (219)
-.++.|+.|||||.+...-++..+.....+.+++++-++.. +-..++..+.......++....-....+. .+ .+..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i-~~~~ 79 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI-KILN 79 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-EecC
Confidence 36789999999998888877776666433567899989887 55566777766555444432211111110 11 1222
Q ss_pred -CCeEEEeCh-HHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 151 -GVHVVSGTP-GRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 151 -~~~I~v~Tp-~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
+..|++..- +...++. + ...+.++.+|||..+....+...+.+ ++. +.....+++|.+.+
T Consensus 80 ~g~~i~f~g~~d~~~~ik-~----~~~~~~~~idEa~~~~~~~~~~l~~r-lr~-~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 80 TGKKFIFKGLNDKPNKLK-S----GAGIAIIWFEEASQLTFEDIKELIPR-LRE-TGGKKFIIFSSNPE 141 (396)
T ss_pred CCeEEEeecccCChhHhh-C----cceeeeehhhhhhhcCHHHHHHHHHH-hhc-cCCccEEEEEcCcC
Confidence 566777654 3222221 1 23368999999998754333333322 333 22222467776643
No 218
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.28 E-value=0.0023 Score=54.41 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=22.3
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEE
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (219)
.+++|.||+|+|||.. +-.++..+.....+...+++
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHHhcCCcEEEEE
Confidence 5799999999999944 33445554433223334444
No 219
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.26 E-value=0.0024 Score=50.02 Aligned_cols=105 Identities=15% Similarity=0.232 Sum_probs=58.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (219)
.+.++||+|+|||- .+.++...+.....+.+++++.. .+......+.+..
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~~~~~v~y~~~-~~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQHPGKRVVYLSA-EEFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHCTTS-EEEEEH-HHHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhccccccceeecH-HHHHHHHHHHHHc----------------------------
Confidence 58999999999993 33344454444334455666643 2222222222211
Q ss_pred CeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc-ccHHHHHHHHHhCCC-CCeEEEEeecccC
Q 027749 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVCCPGSCFLF 218 (219)
Q Consensus 152 ~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~-~~q~i~~SATl~~ 218 (219)
...+.+.+- +...++|++|++|.+... .....+..+++.+.. +.++|+.|...|.
T Consensus 86 -----~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 -----GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPS 142 (219)
T ss_dssp -----TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TT
T ss_pred -----ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCc
Confidence 122333322 346789999999987754 345667777766533 4566666655554
No 220
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.24 E-value=0.0024 Score=58.21 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
+++-|++++.+ ...+++|.|+.|||||.+..--+.+.+... ....++++|+.|+..+.++.+++.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889888765 346899999999999977766666666432 234579999999999999999997764
No 221
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=97.24 E-value=0.012 Score=53.08 Aligned_cols=138 Identities=9% Similarity=0.037 Sum_probs=77.2
Q ss_pred hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce--------eEEEEECCc
Q 027749 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI--------QAHACVGGK 139 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~--------~~~~~~~~~ 139 (219)
.+.+-.++.+|-|.|||++..+.+...+.. .+.++++++|....+.++++++.......+. .+....|+.
T Consensus 185 fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~ 262 (752)
T PHA03333 185 YGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTD 262 (752)
T ss_pred HhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCe
Confidence 355678899999999997766554443321 2467999999999999999998877763321 111111111
Q ss_pred cc-HHHH-HHhc-CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCC-CCCeEEEEeec
Q 027749 140 SV-GEDI-RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVCCPGSC 215 (219)
Q Consensus 140 ~~-~~~~-~~l~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~-~~~q~i~~SAT 215 (219)
.. .-.. .... .+..|.+++.. .+...-...+++|||||.-+-. ..+..++-.+. .+..++++|.+
T Consensus 263 E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l~~~~~k~IiISS~ 331 (752)
T PHA03333 263 ENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----GALLSVLPLMAVKGTKQIHISSP 331 (752)
T ss_pred eEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----HHHHHHHHHHccCCCceEEEeCC
Confidence 00 0000 0000 01233332211 1222223568999999987654 33334444433 36677888876
Q ss_pred ccC
Q 027749 216 FLF 218 (219)
Q Consensus 216 l~~ 218 (219)
-+.
T Consensus 332 ~~~ 334 (752)
T PHA03333 332 VDA 334 (752)
T ss_pred CCc
Confidence 543
No 222
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0048 Score=52.03 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCCchhHHhHHHH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTV 91 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~ 91 (219)
++.+++.||||+|||....--+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA 158 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLA 158 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5678999999999996654433
No 223
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.23 E-value=0.0013 Score=52.16 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=25.6
Q ss_pred ccEEEeccchhhhcc-ccHHHHHHHHHhCCC-CCeEEEEeecccC
Q 027749 176 IKLLVLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVCCPGSCFLF 218 (219)
Q Consensus 176 l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~-~~q~i~~SATl~~ 218 (219)
.++|++||+|.+... .....+..+++.+.. +...+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 468999999987643 345556666655432 2223555665553
No 224
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.21 E-value=0.0013 Score=60.10 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=90.2
Q ss_pred HHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHh-----ccccceeEEEE
Q 027749 63 AVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAI-----GDFINIQAHAC 135 (219)
Q Consensus 63 ~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~-----~~~~~~~~~~~ 135 (219)
.+..+....-+++-+.||+||+.-+.-.++..+..+.. ...+.+--|++..+..+.+++.+- +.-.+.++..
T Consensus 386 i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf- 464 (1282)
T KOG0921|consen 386 ILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRF- 464 (1282)
T ss_pred HHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccc-
Confidence 33444455668899999999999888888887765543 244777778888887777766322 2111221110
Q ss_pred ECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc-ccHHHHHHHHHhCCCCCeEEEEee
Q 027749 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVCCPGS 214 (219)
Q Consensus 136 ~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~~~q~i~~SA 214 (219)
.+..+.. ---|+++|-+.+++++.+.. ..+.++|+||.|...-. .|...+.+=+.....+..++++||
T Consensus 465 ~Sa~prp--------yg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsa 533 (1282)
T KOG0921|consen 465 DSATPRP--------YGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSA 533 (1282)
T ss_pred ccccccc--------ccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhc
Confidence 0111111 12588999999999887653 56778999999964432 233333333333344667788888
Q ss_pred cccCC
Q 027749 215 CFLFD 219 (219)
Q Consensus 215 Tl~~~ 219 (219)
|+..|
T Consensus 534 tIdTd 538 (1282)
T KOG0921|consen 534 TIDTD 538 (1282)
T ss_pred ccchh
Confidence 87543
No 225
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.20 E-value=0.0013 Score=57.01 Aligned_cols=106 Identities=12% Similarity=0.190 Sum_probs=56.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcC
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (219)
..+++.|++|+|||- .+..+.+.+.....+.+++++.. ..+..++...+..-.
T Consensus 142 npl~i~G~~G~GKTH-Ll~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTH-LLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKTH------------------------- 194 (450)
T ss_pred CceEEECCCCCcHHH-HHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHhh-------------------------
Confidence 458899999999992 22344444444334455666655 445444444332100
Q ss_pred CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc-ccHHHHHHHHHhCCC-CCeEEEEeeccc
Q 027749 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVCCPGSCFL 217 (219)
Q Consensus 151 ~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~-~~q~i~~SATl~ 217 (219)
+.+..... .+.+.++||+||+|.+... ...+.+..+++.+.. ..|+| +|+..+
T Consensus 195 ---------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iI-ltsd~~ 249 (450)
T PRK14087 195 ---------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLF-FSSDKS 249 (450)
T ss_pred ---------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEE-EECCCC
Confidence 11111111 1346779999999977532 234556666666533 33554 444433
No 226
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0045 Score=51.47 Aligned_cols=134 Identities=8% Similarity=0.027 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHhCC----CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccccee
Q 027749 56 PSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (219)
Q Consensus 56 ~~~~Q~~~~~~~~~~----~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (219)
.+|||...|..+... +..+++||.|.||+..+.. +...+....... . .| =..+..|+.+.......
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~-~A~~llC~~~~~--~--~~-----Cg~C~sC~~~~~g~HPD 73 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER-LAAALLCEAPQG--G--GA-----CGSCKGCQLLRAGSHPD 73 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH-HHHHHcCCCCCC--C--CC-----CCCCHHHHHHhcCCCCC
Confidence 478999999887643 2478999999999954433 334333221100 0 00 01234444443332222
Q ss_pred EEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcC--CCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeE
Q 027749 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~--~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~ 209 (219)
+..+...... ..| .-+.+..+...- .-.....+++||||+|.|.... .+.+.+.++.-|.+.-+
T Consensus 74 ~~~i~~~~~~----------~~i---~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~a-aNaLLK~LEEPp~~~~f 139 (328)
T PRK05707 74 NFVLEPEEAD----------KTI---KVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNA-ANALLKSLEEPSGDTVL 139 (328)
T ss_pred EEEEeccCCC----------CCC---CHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHH-HHHHHHHHhCCCCCeEE
Confidence 2222110000 000 012222222211 1123467889999999988654 55566677776655555
Q ss_pred EEEe
Q 027749 210 CCPG 213 (219)
Q Consensus 210 i~~S 213 (219)
|+.|
T Consensus 140 iL~t 143 (328)
T PRK05707 140 LLIS 143 (328)
T ss_pred EEEE
Confidence 5544
No 227
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.19 E-value=0.0035 Score=48.94 Aligned_cols=41 Identities=10% Similarity=0.233 Sum_probs=24.1
Q ss_pred ccEEEeccchhhhcc-ccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 176 IKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 176 l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
.++||+||+|.+... .....+..+++........+++|++.
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 468999999987643 23455666655532222245556553
No 228
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.19 E-value=0.0059 Score=55.38 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHhCC-----CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 55 KPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-----~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
.|+..|..++..+.++ ++.++.|.||+|||+...- ++... +..+|||+|+..+|.|+++.++.+...
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~-----~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV-----NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh-----CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 6888999999877533 3667999999999955432 33322 123899999999999999999998754
No 229
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0023 Score=55.49 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.2
Q ss_pred cEEEEcCCCCchhHHhHHH
Q 027749 72 DVIAQAQSGTGKTSMIALT 90 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~ 90 (219)
..+++||.|+|||.++.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999665543
No 230
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.004 Score=51.49 Aligned_cols=140 Identities=12% Similarity=0.159 Sum_probs=71.1
Q ss_pred CCChHHHHHHHHHHh----CCC---cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 027749 54 EKPSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~----~~~---~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (219)
..++|||..+|..+. +|+ -.++.||.|.||+..+. .+...+......+ ++ .+..++.+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~-~lA~~LlC~~~~~-----~~-------~c~~c~~~~~ 69 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL-ALAEHVLASGPDP-----AA-------AQRTRQLIAA 69 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH-HHHHHHhCCCCCC-----CC-------cchHHHHHhc
Confidence 367899999998765 343 48899999999995443 3444443322111 00 1122222222
Q ss_pred ccceeEEEE--ECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCC
Q 027749 127 FINIQAHAC--VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (219)
Q Consensus 127 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~ 204 (219)
.....+..+ ...... . .....|.|---..+.+.+.... .....+++|||++|.|.... .+.+.+.++.-|
T Consensus 70 g~HPD~~~i~~~p~~~~-~-----k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp 141 (319)
T PRK08769 70 GTHPDLQLVSFIPNRTG-D-----KLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRAA-CNALLKTLEEPS 141 (319)
T ss_pred CCCCCEEEEecCCCccc-c-----cccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHHH-HHHHHHHhhCCC
Confidence 221222222 100000 0 0001222222222222222221 23467899999999987554 556666778777
Q ss_pred CCCeEEEEee
Q 027749 205 PDLQVCCPGS 214 (219)
Q Consensus 205 ~~~q~i~~SA 214 (219)
.++.+|+.|.
T Consensus 142 ~~~~fiL~~~ 151 (319)
T PRK08769 142 PGRYLWLISA 151 (319)
T ss_pred CCCeEEEEEC
Confidence 7777777664
No 231
>PRK06921 hypothetical protein; Provisional
Probab=97.16 E-value=0.011 Score=47.64 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=23.3
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (219)
.+.++++.|++|+|||... ..+...+.... +..++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~~-g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRKK-GVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhhc-CceEEEEE
Confidence 3568999999999999332 23344444321 34456654
No 232
>PRK14974 cell division protein FtsY; Provisional
Probab=97.15 E-value=0.011 Score=49.28 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=30.5
Q ss_pred CccEEEeccchhhhc-cccHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 175 AIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~-~~~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
+.++|++|.+.++.. ..+...+..+.+...++.-++.++|+..
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 456888888887653 3456677777777777777788887654
No 233
>PRK06526 transposase; Provisional
Probab=97.14 E-value=0.0017 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=17.5
Q ss_pred HhCCCcEEEEcCCCCchhHHhH
Q 027749 67 IIKGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~~ 88 (219)
+..+++++++||+|+|||....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHH
Confidence 3456799999999999994443
No 234
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.0078 Score=54.92 Aligned_cols=39 Identities=15% Similarity=0.355 Sum_probs=26.2
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++||||+|.|....+ +.+.+.++.-+.+..+|+.+
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEE
Confidence 4578999999998876543 44555666666655555544
No 235
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.13 E-value=0.0034 Score=54.33 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=24.3
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
..+++.||+|+|||-.. ..+.+.+.....+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH
Confidence 46899999999999332 334444444433456777653
No 236
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.13 E-value=0.011 Score=45.44 Aligned_cols=120 Identities=16% Similarity=0.233 Sum_probs=54.1
Q ss_pred EEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC-HHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCC
Q 027749 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (219)
++++||||+|||....=.+.+.... +.+ -+++-+-+ |.=+. +.++.+.+..++.+.......+
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-~~~-v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~----------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-GKK-VALISADTYRIGAV---EQLKTYAEILGVPFYVARTESD----------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSC-----------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-ccc-ceeecCCCCCccHH---HHHHHHHHHhccccchhhcchh-----------
Confidence 6789999999996654433333333 222 34444443 32222 3333343333555443322221
Q ss_pred CeEEEeChHHHH-HHHHcCCCCCCCccEEEeccchhhhc-cccHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 152 VHVVSGTPGRVC-DMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 152 ~~I~v~Tp~~l~-~~l~~~~~~~~~l~~lVvDE~h~l~~-~~~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
|..+. ..+... ..++.++|+||-+-+... ......+..+++.+.+..-.+.+|||..
T Consensus 68 -------~~~~~~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 68 -------PAEIAREALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp -------HHHHHHHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred -------hHHHHHHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 11111 111110 113355666666543221 1234455555555555555666666654
No 237
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.13 E-value=0.012 Score=53.52 Aligned_cols=152 Identities=14% Similarity=0.240 Sum_probs=90.0
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhCCC--cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 027749 44 LLRGIYQYGFEKPSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (219)
Q Consensus 44 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~~--~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (219)
.-..+.+.....+..-|.+.+..+...+ -+++.|.-|-|||.+.-+.+....... ....++|.+|+.+-++.+++.+
T Consensus 203 ~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~-~~~~iiVTAP~~~nv~~Lf~fa 281 (758)
T COG1444 203 FPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA-GSVRIIVTAPTPANVQTLFEFA 281 (758)
T ss_pred CCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc-CCceEEEeCCCHHHHHHHHHHH
Confidence 3344555444445555555665555443 588999999999977666552222222 1457999999999999999988
Q ss_pred HHhccccceeEEEEECCcccHHHHHHh-cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHH
Q 027749 122 LAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (219)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~ 200 (219)
.+-....++......... ...... .+...|=+..|.... ..-+++|||||=.+- ...+.+++
T Consensus 282 ~~~l~~lg~~~~v~~d~~---g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~ 344 (758)
T COG1444 282 GKGLEFLGYKRKVAPDAL---GEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLL 344 (758)
T ss_pred HHhHHHhCCccccccccc---cceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHH
Confidence 776655554322111000 000011 122345556663211 116789999996543 56677777
Q ss_pred HhCCCCCeEEEEeeccc
Q 027749 201 RYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 201 ~~~~~~~q~i~~SATl~ 217 (219)
+..+ .++||.|+.
T Consensus 345 ~~~~----rv~~sTTIh 357 (758)
T COG1444 345 RRFP----RVLFSTTIH 357 (758)
T ss_pred hhcC----ceEEEeeec
Confidence 7654 588888864
No 238
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=97.12 E-value=0.0056 Score=53.47 Aligned_cols=145 Identities=12% Similarity=0.094 Sum_probs=86.0
Q ss_pred CChHHHHHHHHHHh------CC----CcEEEEcCCCCchhHHhH-HHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 027749 55 KPSAIQQRAVMPII------KG----RDVIAQAQSGTGKTSMIA-LTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~------~~----~~~lv~~~tG~GKT~~~~-~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (219)
..-|||+.++-.+. .+ +..+|..|-+.|||.... +.....+.....+....|++|+.+.+.+.+..++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 66899999998876 11 357899999999994433 44444454556667899999999999999998877
Q ss_pred hccccc-eeEEEEECCcccHHHHHHhcC-CCeEEEeChHHHHHHHHc--CCCCCCCccEEEeccchhhhccccHHHHHHH
Q 027749 124 IGDFIN-IQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (219)
Q Consensus 124 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~I~v~Tp~~l~~~l~~--~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i 199 (219)
...... ++.. ..... ...|...--....+.+.. +..+-.+....|+||.|.....+ ..+..+
T Consensus 141 mv~~~~~l~~~------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~ 206 (546)
T COG4626 141 MVKRDDDLRDL------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEA 206 (546)
T ss_pred HHHhCcchhhh------------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHH
Confidence 654432 1100 00000 111111111111122222 23444566789999999866543 555555
Q ss_pred HHhCC--CCCeEEEEe
Q 027749 200 YRYLP--PDLQVCCPG 213 (219)
Q Consensus 200 ~~~~~--~~~q~i~~S 213 (219)
..-+. ++.+++..|
T Consensus 207 ~~g~~ar~~~l~~~IT 222 (546)
T COG4626 207 KGGLGARPEGLVVYIT 222 (546)
T ss_pred HhhhccCcCceEEEEe
Confidence 55553 355666555
No 239
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.11 E-value=0.011 Score=50.21 Aligned_cols=20 Identities=25% Similarity=0.415 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALT 90 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~ 90 (219)
+.+.+.||+|+|||.....-
T Consensus 242 ~vI~LVGptGvGKTTTiaKL 261 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKM 261 (436)
T ss_pred cEEEEECCCCCcHHHHHHHH
Confidence 46789999999999555443
No 240
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.11 E-value=0.0022 Score=47.72 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=30.8
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeec
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSC 215 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 215 (219)
...+++|+||+|.|... ....+.+.++.-|.+..+|++|..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECC
Confidence 56889999999998755 367788888887777777776654
No 241
>PRK08727 hypothetical protein; Validated
Probab=97.11 E-value=0.0028 Score=50.12 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=23.7
Q ss_pred CCccEEEeccchhhhcc-ccHHHHHHHHHhCCC-CCeEEEEeeccc
Q 027749 174 RAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVCCPGSCFL 217 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~-~~q~i~~SATl~ 217 (219)
.+.++||+||+|.+... .....+..+++.... ..+ +++|+..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~-vI~ts~~~ 136 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGIT-LLYTARQM 136 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCe-EEEECCCC
Confidence 44578999999987643 223344455554422 234 44444433
No 242
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.10 E-value=0.0045 Score=62.46 Aligned_cols=63 Identities=32% Similarity=0.420 Sum_probs=45.6
Q ss_pred CCChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhH---HHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 027749 54 EKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIA---LTVCQTVDTSSREVQALILSPTRELATQTE 118 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~---~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 118 (219)
..+++.|..++..++.+ +-++|.|+.|+|||.... -++...+.. .+..++.++||...+..+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHH
Confidence 36899999999998765 557889999999995441 223333332 2456889999988877664
No 243
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.0042 Score=55.78 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=27.2
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++||||+|+|....+ +.+.+.++.-+.++.+|+.|
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEe
Confidence 4678999999999876554 34445566656677666665
No 244
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.06 E-value=0.0081 Score=49.47 Aligned_cols=39 Identities=13% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
...+++|+||||.|... -...+.+.++.-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 67889999999998853 3556666666655555555554
No 245
>PLN03025 replication factor C subunit; Provisional
Probab=97.06 E-value=0.0072 Score=50.06 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=26.0
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
...+++|+||+|.|.... ...+.+.++..++...+++.
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~ 135 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALA 135 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEE
Confidence 357899999999987543 45566667666655555543
No 246
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.04 E-value=0.014 Score=48.51 Aligned_cols=39 Identities=8% Similarity=0.152 Sum_probs=26.8
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
...++||+||+|.+... ....+..+++..+..+.+|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45678999999987543 3456677777766666666544
No 247
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=97.01 E-value=0.0056 Score=54.17 Aligned_cols=132 Identities=12% Similarity=0.114 Sum_probs=85.8
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (219)
+.+-.+...|--.||| +++.|++..+..+-.+.++-|++.-+..++-+++++...+..- ++.... ..
T Consensus 201 KQkaTVFLVPRRHGKT-Wf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrw-------F~~~~v-----i~ 267 (668)
T PHA03372 201 KQKATVFLVPRRHGKT-WFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRM-------FPRKHT-----IE 267 (668)
T ss_pred hccceEEEecccCCce-ehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhh-------cCccce-----ee
Confidence 3456788899999999 7888899988888788999999999999988888774333221 000000 00
Q ss_pred cCCCeEEEeChHHH-----HHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCC-CCCeEEEEeeccc
Q 027749 149 EHGVHVVSGTPGRV-----CDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVCCPGSCFL 217 (219)
Q Consensus 149 ~~~~~I~v~Tp~~l-----~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~-~~~q~i~~SATl~ 217 (219)
.++-.|.+.-|+.= ..-.+.+.+.-++..+++|||||-+- .+.+..++..|. +++.+|+.|.|=+
T Consensus 268 ~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~Ns 338 (668)
T PHA03372 268 NKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISSTNT 338 (668)
T ss_pred ecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCCCC
Confidence 01122333333211 11112244555778999999999544 466778888864 5788999988743
No 248
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0043 Score=55.73 Aligned_cols=39 Identities=15% Similarity=0.294 Sum_probs=25.6
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++||||+|+|....+ +.+.+.++..|.++.+|+.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~-NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAF-NAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHH-HHHHHhcccCCCCeEEEEEE
Confidence 4678999999999876553 33445555555555555543
No 249
>PRK08116 hypothetical protein; Validated
Probab=97.00 E-value=0.0037 Score=50.48 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=24.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (219)
..++++|++|+|||..+ ..+.+.+... +..++++ +...+...+
T Consensus 115 ~gl~l~G~~GtGKThLa-~aia~~l~~~--~~~v~~~-~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA-ACIANELIEK--GVPVIFV-NFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHc--CCeEEEE-EHHHHHHHH
Confidence 34999999999999333 2345555443 2234444 344444433
No 250
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.00 E-value=0.0044 Score=48.63 Aligned_cols=42 Identities=7% Similarity=0.129 Sum_probs=25.5
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCe-EEEEeeccc
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ-VCCPGSCFL 217 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q-~i~~SATl~ 217 (219)
..++||+||+|.+.... ...+..+++....... +++++++.+
T Consensus 90 ~~~~liiDdi~~l~~~~-~~~L~~~~~~~~~~~~~~vl~~~~~~ 132 (227)
T PRK08903 90 EAELYAVDDVERLDDAQ-QIALFNLFNRVRAHGQGALLVAGPAA 132 (227)
T ss_pred cCCEEEEeChhhcCchH-HHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 45689999999865432 4455566655433333 466666543
No 251
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.96 E-value=0.017 Score=49.77 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 027749 70 GRDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~ 89 (219)
++.+++.||||+|||....-
T Consensus 221 ~~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999965543
No 252
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0083 Score=52.44 Aligned_cols=117 Identities=13% Similarity=0.151 Sum_probs=58.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCccc-HHHHHHhc
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSV-GEDIRKLE 149 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 149 (219)
+..+++||.|+|||.++.+.+ ..+... .++ +..-+ ..+..|..+.......+..+.+..+. -++++.+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA-k~LnC~-~~~-------~~~pC-g~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~I- 104 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS-LCLNCS-NGP-------TSDPC-GTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVI- 104 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH-HHHcCc-CCC-------CCCCc-cccHHHHHHhccCCCCEEEEecccCCCHHHHHHH-
Confidence 368999999999996655432 222111 111 00001 12445555554445555554432211 1112221
Q ss_pred CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 150 ~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+...... ...+.+++|+||+|.|.... .+.+.+.++..|++..+|+.+
T Consensus 105 -------------ie~~~~~P-~~~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 105 -------------LENSCYLP-ISSKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred -------------HHHHHhcc-ccCCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 11111122 23578899999999877544 344555566656555555543
No 253
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.93 E-value=0.0069 Score=48.67 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchhHHhH
Q 027749 71 RDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~ 88 (219)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 478999999999995543
No 254
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.93 E-value=0.011 Score=55.07 Aligned_cols=39 Identities=15% Similarity=0.333 Sum_probs=29.3
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++||||+|.|.... .+.+.++++..+.++-+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999988654 456677777777776666655
No 255
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0088 Score=52.72 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=27.9
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++|+||+|.|....+ +.+.+.++..|+++.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998876543 45556777777776666654
No 256
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.90 E-value=0.0065 Score=51.33 Aligned_cols=89 Identities=19% Similarity=0.261 Sum_probs=50.7
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (219)
++-+.+.||||.|||....=.+.......+...-+||.+-|--.+. .+.++-++...++.+..+............+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~ 280 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVYSPKELAEAIEALR 280 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence 6789999999999996554333333322223344677766654432 24444455555677776666666555554444
Q ss_pred CCCeEEEeChH
Q 027749 150 HGVHVVSGTPG 160 (219)
Q Consensus 150 ~~~~I~v~Tp~ 160 (219)
+.--|+|-|.+
T Consensus 281 ~~d~ILVDTaG 291 (407)
T COG1419 281 DCDVILVDTAG 291 (407)
T ss_pred cCCEEEEeCCC
Confidence 43334455543
No 257
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.89 E-value=0.0076 Score=49.09 Aligned_cols=117 Identities=15% Similarity=0.241 Sum_probs=60.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhcc----CCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDT----SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~----~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (219)
.+.+++|+++.|||...---.-.+-.. ...-|-+.+-+|...-....+..+-.... .... ...
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg---aP~~----~~~------ 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG---APYR----PRD------ 128 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC---cccC----CCC------
Confidence 489999999999995331111111000 11126677778887777766666643321 1110 000
Q ss_pred HhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccH--HHHHHHHHhCCCCC--eEEEE
Q 027749 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK--DQIYDVYRYLPPDL--QVCCP 212 (219)
Q Consensus 147 ~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~--~~~~~i~~~~~~~~--q~i~~ 212 (219)
+...+..... ..+..-++++|||||+|.++..... ..+.+.++.+.+.. .++++
T Consensus 129 -----------~~~~~~~~~~-~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 129 -----------RVAKLEQQVL-RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred -----------CHHHHHHHHH-HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 1111111111 1111235789999999998865433 34555566665543 34443
No 258
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.89 E-value=0.007 Score=48.75 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=56.5
Q ss_pred HHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccH---
Q 027749 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVG--- 142 (219)
Q Consensus 66 ~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--- 142 (219)
-+..|.-+++.|++|+|||......+.+.+... +..++|+.- ..-..++...+........+.........+..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~--g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQH--GVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFD 102 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhc--CceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCCccccccHHHHH
Confidence 345667899999999999954443333333321 334666653 22334444444332211121110000011111
Q ss_pred HHHHHhcCCCeEEEe------ChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 143 EDIRKLEHGVHVVSG------TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 143 ~~~~~l~~~~~I~v~------Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
.....+.....+++. +++.+...+..-. .-.++++||||..+.+...
T Consensus 103 ~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 103 AAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 111222221222221 4555555444211 1135789999999987643
No 259
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.88 E-value=0.01 Score=44.83 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=30.0
Q ss_pred EEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
++|.||+|+|||...+--+...+ .. +.+++|+.. .+...++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~--g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-AR--GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HC--CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 68999999999954443333333 22 344777754 45566666666555
No 260
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.85 E-value=0.0064 Score=54.21 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=74.7
Q ss_pred CChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHH-HHHHHhcccccee
Q 027749 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-KVILAIGDFINIQ 131 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~-~~~~~~~~~~~~~ 131 (219)
..+|+|.+.+..+... +.+.++.++.+|||.+.+..+...+...+. .++++.||...+.... ..+..+......-
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l 93 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG--PMLYVQPTDDAAKDFSKERLDPMIRASPVL 93 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC--CEEEEEEcHHHHHHHHHHHHHHHHHhCHHH
Confidence 5688999998887654 579999999999998666655555555543 3999999999999765 5555554433210
Q ss_pred EEEEEC---CcccH-HHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhh
Q 027749 132 AHACVG---GKSVG-EDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 132 ~~~~~~---~~~~~-~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~ 188 (219)
-..+.. ....+ ....... +..+.++...+ -..+.-..++++++||+|..-
T Consensus 94 ~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 94 RRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANS------PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHhCchhhcccCCchhheecC-CCEEEEEeCCC------CcccccCCcCEEEEechhhcc
Confidence 011111 00100 1111122 34444433210 122334568899999999874
No 261
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=96.82 E-value=0.0018 Score=56.32 Aligned_cols=97 Identities=20% Similarity=0.178 Sum_probs=64.0
Q ss_pred EEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCC
Q 027749 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (219)
++=+|||.|||| ..+++++...+. .+|--|.+-||.++++.+... ++.+.++.|.......-. .+.+
T Consensus 194 i~H~GPTNSGKT----y~ALqrl~~aks---GvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~~a 260 (700)
T KOG0953|consen 194 IMHVGPTNSGKT----YRALQRLKSAKS---GVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GNPA 260 (700)
T ss_pred EEEeCCCCCchh----HHHHHHHhhhcc---ceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CCcc
Confidence 556799999999 445677666544 789999999999999988766 566666665544322211 1234
Q ss_pred eEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 153 ~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
+.+-||-+... .-..++..|+||+.+|-+.
T Consensus 261 ~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp 290 (700)
T KOG0953|consen 261 QHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDP 290 (700)
T ss_pred cceEEEEEEee--------cCCceEEEEehhHHhhcCc
Confidence 55666643210 1235678889998887765
No 262
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.0086 Score=55.58 Aligned_cols=38 Identities=11% Similarity=0.186 Sum_probs=25.8
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
.+.+++||||+|+|.... .+.+.+.++.-|.++.+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 467899999999986443 45555666665666665554
No 263
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.81 E-value=0.0089 Score=49.29 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=28.0
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..++||+||+|.+........+..+++..+.++++|+.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999998844434566777788777777766644
No 264
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.80 E-value=0.0093 Score=48.98 Aligned_cols=67 Identities=21% Similarity=0.372 Sum_probs=42.0
Q ss_pred HHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 44 LLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 44 ~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
-+..|.+.|. .++.|...+.. +..+++++++|+||+||| .++-.++..+......-+++++-...++
T Consensus 107 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 107 TLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKT-TLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHHhhccCCCceEEEECCchhh
Confidence 3445555554 34444444444 556779999999999999 5555566666543233457777666665
No 265
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.79 E-value=0.0074 Score=49.99 Aligned_cols=65 Identities=22% Similarity=0.262 Sum_probs=41.5
Q ss_pred HHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 46 RGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 46 ~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
..+.+.|. .++.|...+.. +..+++++++|+||+||| .++-.++..+......-+++.+=.+.++
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKT-Tll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKT-TLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 34555554 45566666555 456679999999999999 4555666665433333456666666655
No 266
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.78 E-value=0.019 Score=45.72 Aligned_cols=34 Identities=26% Similarity=0.477 Sum_probs=21.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEE
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (219)
..+++.|++|+|||.... .+...+... +..++++
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~~--g~~v~~i 133 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLLR--GKSVLII 133 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHhc--CCeEEEE
Confidence 479999999999994333 344444443 2335555
No 267
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.78 E-value=0.0079 Score=50.04 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=25.8
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 116 (219)
.++++++.|++|+|||... ..+...+... +..++++ +...+..+
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~~--g~~V~y~-t~~~l~~~ 225 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLDR--GKSVIYR-TADELIEI 225 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHC--CCeEEEE-EHHHHHHH
Confidence 3578999999999999432 2334444433 3345554 33444443
No 268
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.77 E-value=0.016 Score=48.76 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=17.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
.+++|.||+|+|||... -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999443 3344444
No 269
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.77 E-value=0.0024 Score=59.00 Aligned_cols=67 Identities=10% Similarity=-0.017 Sum_probs=58.9
Q ss_pred CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 151 ~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
...|+++||..+..-+..+.++++++..|||||||++....-...+.++.+.-.+..-+.+|||...
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 4689999999999877788899999999999999999888777888888888888888999999754
No 270
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.76 E-value=0.01 Score=48.21 Aligned_cols=26 Identities=12% Similarity=0.348 Sum_probs=18.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTS 98 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~ 98 (219)
=++|.||||||||.. +.+++..+...
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 388999999999943 34455555443
No 271
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.75 E-value=0.051 Score=47.51 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=46.2
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (219)
|+-+.+.||||+|||......+.......+...-.++-+-+.-.. ..+.++.+....++.+...............+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIG--GHEQLRIYGKILGVPVHAVKDAADLRLALSELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchh--HHHHHHHHHHHhCCCeeccCCchhHHHHHHhcc
Confidence 345789999999999776554433323322212233333332111 234444444444554443333333333344444
Q ss_pred CCCeEEEeChHHH
Q 027749 150 HGVHVVSGTPGRV 162 (219)
Q Consensus 150 ~~~~I~v~Tp~~l 162 (219)
....++|-|+++.
T Consensus 334 d~d~VLIDTaGr~ 346 (484)
T PRK06995 334 NKHIVLIDTIGMS 346 (484)
T ss_pred CCCeEEeCCCCcC
Confidence 4456888888843
No 272
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.012 Score=52.97 Aligned_cols=39 Identities=10% Similarity=0.199 Sum_probs=26.5
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++||||+|+|.... ...+.+.++..+.+..+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 356899999999876554 455666677766666555543
No 273
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.74 E-value=0.024 Score=47.85 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=59.4
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (219)
.+.+.++|+.|.|||+ ++.++........+.+ ++..+...++.+.+.++. |+.+.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~-------- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPIKRKRR----VHFHEFMLDVHSRLHQLR-----------GQDDP-------- 116 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCcccccc----ccccHHHHHHHHHHHHHh-----------CCCcc--------
Confidence 4679999999999993 4433333222222222 245666777777776653 11110
Q ss_pred CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC-CCCCeEEEEeecccC
Q 027749 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVCCPGSCFLF 218 (219)
Q Consensus 150 ~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~-~~~~q~i~~SATl~~ 218 (219)
...+.+.+ .+...+|++||.|. .+.+-...+.++++.+ ..+.-++.-|-+.|.
T Consensus 117 ---------l~~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~ 170 (362)
T PF03969_consen 117 ---------LPQVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPE 170 (362)
T ss_pred ---------HHHHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChH
Confidence 11111221 24456899999984 4444456666676665 335556665555553
No 274
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.71 E-value=0.0048 Score=51.85 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 027749 71 RDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~ 89 (219)
.+.|++||.|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4799999999999955433
No 275
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.016 Score=49.61 Aligned_cols=40 Identities=10% Similarity=0.154 Sum_probs=24.7
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
...-+++||||+|.|.... ...+...++..++...+|+.+
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 4567899999999987543 334445555555444444433
No 276
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.69 E-value=0.013 Score=52.37 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=26.4
Q ss_pred CCccEEEeccchhhhcc-ccHHHHHHHHHhCCC-CCeEEEEeecc
Q 027749 174 RAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVCCPGSCF 216 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~-~~q~i~~SATl 216 (219)
.++++|||||+|.+... .....+..+++.+.. +.++|+ |+..
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~III-TSd~ 419 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVL-SSDR 419 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEE-ecCC
Confidence 45789999999987653 234556666666543 455665 4443
No 277
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.69 E-value=0.012 Score=52.72 Aligned_cols=40 Identities=13% Similarity=0.268 Sum_probs=27.8
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..+.+++||||+|.|.... .+.+.+.++..+.++.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999887543 345555566666676666654
No 278
>PRK12377 putative replication protein; Provisional
Probab=96.67 E-value=0.033 Score=44.42 Aligned_cols=45 Identities=9% Similarity=0.251 Sum_probs=25.9
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (219)
.++++.|++|+|||-.. ..+...+... +..++ .++..++..++..
T Consensus 102 ~~l~l~G~~GtGKThLa-~AIa~~l~~~--g~~v~-~i~~~~l~~~l~~ 146 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLA-AAIGNRLLAK--GRSVI-VVTVPDVMSRLHE 146 (248)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCeE-EEEHHHHHHHHHH
Confidence 57999999999999332 3334444433 22243 3344555554443
No 279
>PF13173 AAA_14: AAA domain
Probab=96.65 E-value=0.037 Score=39.30 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=26.1
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEee
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGS 214 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 214 (219)
.-.+|++||+|.+- ++...+..+.+.- ++.++++.+.
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEcc
Confidence 55689999999865 4567788877765 4556665543
No 280
>PF05729 NACHT: NACHT domain
Probab=96.64 E-value=0.018 Score=42.28 Aligned_cols=38 Identities=26% Similarity=0.443 Sum_probs=24.3
Q ss_pred EEEeccchhhhccc-------cHHHHHHHHHh-CCCCCeEEEEeec
Q 027749 178 LLVLDESDEMLSRG-------FKDQIYDVYRY-LPPDLQVCCPGSC 215 (219)
Q Consensus 178 ~lVvDE~h~l~~~~-------~~~~~~~i~~~-~~~~~q~i~~SAT 215 (219)
+||+|-.|.+.... +...+..++.. ++++.++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 49999999887642 23345555555 4556777666654
No 281
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.64 E-value=0.0099 Score=53.91 Aligned_cols=109 Identities=21% Similarity=0.179 Sum_probs=69.4
Q ss_pred cEEEEcCCCCchhHHhHHHHHhh-hccC-----CCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHH
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQT-VDTS-----SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~-~~~~-----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (219)
-.|+.-..|-|||..-+..++.. .... ......+||+|+. +..|+..++.+..+.....+..++| .....
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s-~~~qW~~elek~~~~~~l~v~v~~g---r~kd~ 229 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTS-LLTQWKTELEKVTEEDKLSIYVYHG---RTKDK 229 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchH-HHHHHHHHHhccCCccceEEEEecc---ccccc
Confidence 47888899999997665544432 2222 1344588888865 5567777776666666677777776 11111
Q ss_pred HHhcCCCeEEEeChHHHHHHHHcCCCCCCCcc--EEEeccchhhhccc
Q 027749 146 RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIK--LLVLDESDEMLSRG 191 (219)
Q Consensus 146 ~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~--~lVvDE~h~l~~~~ 191 (219)
....+++|+++|++.+.. ..+..+. .+|+||+|.+.+..
T Consensus 230 -~el~~~dVVltTy~il~~------~~l~~i~w~Riildea~~ikn~~ 270 (674)
T KOG1001|consen 230 -SELNSYDVVLTTYDILKN------SPLVKIKWLRIVLDEAHTIKNKD 270 (674)
T ss_pred -chhcCCceEEeeHHHhhc------ccccceeEEEEEeccccccCCcc
Confidence 122467899999976653 1222343 49999999877643
No 282
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.62 E-value=0.024 Score=46.57 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=25.7
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..++|++||+|.+.... ...+..+++..+..+.+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 46789999999875432 455666677666666666544
No 283
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.59 E-value=0.026 Score=50.99 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=25.9
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
.+.+++||||+|+|.... .+.+.+.++.-|.+..+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999887654 44455566665655555554
No 284
>PRK04195 replication factor C large subunit; Provisional
Probab=96.56 E-value=0.031 Score=49.05 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
.+.+++.||.|+|||...
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999444
No 285
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.55 E-value=0.015 Score=50.38 Aligned_cols=42 Identities=10% Similarity=0.250 Sum_probs=24.7
Q ss_pred CCccEEEeccchhhhcc-ccHHHHHHHHHhCC-CCCeEEEEeecc
Q 027749 174 RAIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVCCPGSCF 216 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~-~~~q~i~~SATl 216 (219)
...++|++||+|.+... .....+..+++.+. ...| ++++++.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~-IIlts~~ 244 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKL-IVISSTC 244 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCc-EEEecCC
Confidence 35789999999987653 22445555555432 2344 4555544
No 286
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.0034 Score=52.00 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHh----CC---CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccc
Q 027749 56 PSAIQQRAVMPII----KG---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (219)
Q Consensus 56 ~~~~Q~~~~~~~~----~~---~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (219)
.+|||+..|..+. +| +-.++.||.|.||+..+.. +...+....... . -| + ..+..|+.+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~-~A~~llC~~~~~--~--~~----C-g~C~sC~~~~~g~ 72 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRA-LAQWLMCQTPQG--D--QP----C-GQCHSCHLFQAGN 72 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHH-HHHHHcCCCCCC--C--CC----C-CCCHHHHHHhcCC
Confidence 3677888887654 34 3577999999999954433 334433221100 0 00 0 1234444444333
Q ss_pred ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc--CCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCC
Q 027749 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~--~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~ 206 (219)
...+..+.... +..| .-+.+.++... ..-.-...+++|+|+||.|.... .+.+.+.++.-|++
T Consensus 73 HPD~~~i~p~~-----------~~~I---~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~A-aNaLLKtLEEPp~~ 137 (325)
T PRK06871 73 HPDFHILEPID-----------NKDI---GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAA-ANALLKTLEEPRPN 137 (325)
T ss_pred CCCEEEEcccc-----------CCCC---CHHHHHHHHHHHhhccccCCceEEEEechhhhCHHH-HHHHHHHhcCCCCC
Confidence 33332221100 0011 12222222221 11123567899999999988553 56667777776666
Q ss_pred CeEEEEe
Q 027749 207 LQVCCPG 213 (219)
Q Consensus 207 ~q~i~~S 213 (219)
.-+|+.|
T Consensus 138 ~~fiL~t 144 (325)
T PRK06871 138 TYFLLQA 144 (325)
T ss_pred eEEEEEE
Confidence 6555554
No 287
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.024 Score=49.50 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=20.2
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCC
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~ 206 (219)
..+.++||+||+|.+.... ...+...++..+.+
T Consensus 115 ~~~~kVvIIDE~h~Lt~~a-~~~LLk~LE~p~~~ 147 (472)
T PRK14962 115 EGKYKVYIIDEVHMLTKEA-FNALLKTLEEPPSH 147 (472)
T ss_pred cCCeEEEEEEChHHhHHHH-HHHHHHHHHhCCCc
Confidence 3567899999999986433 23344444444433
No 288
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.025 Score=50.11 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=26.8
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++||||+|.|.... .+.+.+.++..|.+..+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 467899999999887544 344555566666666666654
No 289
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.52 E-value=0.018 Score=49.68 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=26.4
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhH
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~ 88 (219)
.+.......+..+..++++++.||+|+|||..+.
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 3445556667777789999999999999995553
No 290
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.51 E-value=0.014 Score=48.29 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=43.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 44 LLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 44 ~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
-+..|.+.|. +++.|...+.. +..+++++++|+||+||| .++-.++..+.......+++++-.+.++
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 3455555565 45566666654 556789999999999999 5555566554322233456776666665
No 291
>CHL00181 cbbX CbbX; Provisional
Probab=96.49 E-value=0.029 Score=45.80 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 027749 70 GRDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~ 89 (219)
+.++++.||+|+|||..+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999965544
No 292
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.48 E-value=0.032 Score=50.78 Aligned_cols=67 Identities=24% Similarity=0.312 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHhC----C-CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 55 KPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~-~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
.|++.|..++..+.+ + ++.++.|.+|+||++.+. .++... +..+|||+|+...+.++++.+..+...
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-----~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-----QRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-----CCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 789999999988753 2 257799999999995543 233221 234999999999999999999888654
No 293
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.47 E-value=0.025 Score=51.36 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=26.4
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++||||+|.|.... ...+.+.++..+.++.+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 467899999999876433 345566666666666666554
No 294
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.05 Score=48.33 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=27.7
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++||||+|.|.... .+.+.+.++..|.+..+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 466899999999987543 455666777766666666654
No 295
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.029 Score=50.32 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=26.9
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++||||+|.|.... .+.+.+.++..|.+.-+|+.+
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 567899999999877543 456666666666665555544
No 296
>PRK06904 replicative DNA helicase; Validated
Probab=96.46 E-value=0.04 Score=48.17 Aligned_cols=140 Identities=20% Similarity=0.226 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEE-EC-CcccHHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VG-GKSVGEDIR 146 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 146 (219)
.|.=++|.|.+|.||| ++.+-++..+.... +..++|.. ...-..|+..++-..... +....+ .| ..+. +++.
T Consensus 220 ~G~LiiIaarPg~GKT-afalnia~~~a~~~-g~~Vl~fS-lEMs~~ql~~Rlla~~s~--v~~~~i~~g~~l~~-~e~~ 293 (472)
T PRK06904 220 PSDLIIVAARPSMGKT-TFAMNLCENAAMAS-EKPVLVFS-LEMPAEQIMMRMLASLSR--VDQTKIRTGQNLDQ-QDWA 293 (472)
T ss_pred CCcEEEEEeCCCCChH-HHHHHHHHHHHHhc-CCeEEEEe-ccCCHHHHHHHHHHhhCC--CCHHHhccCCCCCH-HHHH
Confidence 4455788899999999 45555555443221 22355553 345556666665433222 221111 22 1222 2222
Q ss_pred -------HhcCCCeEEE-----eChHHHHHHHHcCCCCCCCccEEEeccchhhhccc----cHHHHHHHHHhC---C--C
Q 027749 147 -------KLEHGVHVVS-----GTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYL---P--P 205 (219)
Q Consensus 147 -------~l~~~~~I~v-----~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~----~~~~~~~i~~~~---~--~ 205 (219)
.+.....+.| .|+..+....+.-......+++||||-.+.|...+ ....+..+.+.+ - .
T Consensus 294 ~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 373 (472)
T PRK06904 294 KISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKEL 373 (472)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 2222344555 35555554332211111358899999998775332 223344444443 2 2
Q ss_pred CCeEEEEee
Q 027749 206 DLQVCCPGS 214 (219)
Q Consensus 206 ~~q~i~~SA 214 (219)
++.++++|.
T Consensus 374 ~ipVi~lsQ 382 (472)
T PRK06904 374 KVPVVALSQ 382 (472)
T ss_pred CCeEEEEEe
Confidence 677888874
No 297
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=96.45 E-value=0.057 Score=44.98 Aligned_cols=118 Identities=18% Similarity=0.164 Sum_probs=57.3
Q ss_pred EEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHH----HHHHHHhccccceeEEEE-ECCcccHHHHHHh
Q 027749 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT----EKVILAIGDFINIQAHAC-VGGKSVGEDIRKL 148 (219)
Q Consensus 74 lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l 148 (219)
++.++.|+|||......++..+........+++. ++...+... ...+..+... .+....- ..... ..+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~ 73 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRK-----IIL 73 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSE-----EEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCc-----EEe
Confidence 4678999999988887777777666544556666 665555542 2333333333 2222211 00000 011
Q ss_pred cCCCeEEEeChHH--HHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 149 EHGVHVVSGTPGR--VCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 149 ~~~~~I~v~Tp~~--l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
.++..|.+.+-+. -...+.. ..++++++||+-.+.+..+...+.......
T Consensus 74 ~nG~~i~~~~~~~~~~~~~~~G-----~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~ 125 (384)
T PF03237_consen 74 PNGSRIQFRGADSPDSGDNIRG-----FEYDLIIIDEAAKVPDDAFSELIRRLRATW 125 (384)
T ss_dssp TTS-EEEEES-----SHHHHHT-----S--SEEEEESGGGSTTHHHHHHHHHHHHCS
T ss_pred cCceEEEEeccccccccccccc-----cccceeeeeecccCchHHHHHHHHhhhhcc
Confidence 4567777766332 1122222 467799999988765554445454444443
No 298
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.44 E-value=0.02 Score=44.90 Aligned_cols=132 Identities=13% Similarity=0.113 Sum_probs=66.0
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccc-------ceeEEEEECCccc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI-------NIQAHACVGGKSV 141 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~-------~~~~~~~~~~~~~ 141 (219)
.|..++|.|++|+|||...+-.+...+...+ -++++++- .+-..++.+.+..+.... .+.+.-. ...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~---~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFG--EKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDA---FPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEES---SGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC--CcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEec---ccc
Confidence 3457899999999999555444445544412 23777764 444466666665553211 0111100 000
Q ss_pred HHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc----ccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 142 GEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 142 ~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~----~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
.... . -..++.+...+.+.. .-.+.+.+|+|-...+... .+...+..+...+.....+.++++..
T Consensus 92 ~~~~-------~--~~~~~~l~~~i~~~i-~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 92 RIGW-------S--PNDLEELLSKIREAI-EELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEM 160 (226)
T ss_dssp GST--------T--SCCHHHHHHHHHHHH-HHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cccc-------c--ccCHHHHHHHHHHHH-HhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 0000 0 112344444333210 0112278999999988221 35566666776665555566666653
No 299
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.018 Score=48.66 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=25.3
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++|+||+|.|....+ +.+.+.++..|.+..+|+.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4568999999998875433 33555556555566555544
No 300
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.41 E-value=0.087 Score=49.22 Aligned_cols=29 Identities=17% Similarity=0.625 Sum_probs=20.3
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
....+||+||+|.+.... ...+..+++..
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~~ 896 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDWP 896 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHHh
Confidence 446689999999988642 45566666653
No 301
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.049 Score=45.79 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=27.5
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
...+++||||+|.|.... .+.+.+.++..+.+.-+|++|
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 467899999999987554 455666777766666566655
No 302
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.018 Score=47.65 Aligned_cols=135 Identities=12% Similarity=0.120 Sum_probs=68.7
Q ss_pred CChHHHHHHHHHHh----CCC---cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 55 KPSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~---~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
.++|||...|..+. +++ -.++.||.|.||+..+.. +.+.+........ | + ..+..|+.+...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~-~a~~llC~~~~~~-----~----C-g~C~sC~~~~~g 71 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL-FSRALLCQNYQSE-----A----C-GFCHSCELMQSG 71 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHcCCCCCCC-----C----C-CCCHHHHHHHcC
Confidence 46788888887765 343 589999999999944433 3333332211100 1 0 112344444333
Q ss_pred cceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc--CCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCC
Q 027749 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (219)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~--~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~ 205 (219)
....+..+..... +..| +-+.+..+... ........+++|||+||.|.... .+.+.+.++.-|+
T Consensus 72 ~HPD~~~i~p~~~----------~~~I---~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~ 137 (319)
T PRK06090 72 NHPDLHVIKPEKE----------GKSI---TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESA-SNALLKTLEEPAP 137 (319)
T ss_pred CCCCEEEEecCcC----------CCcC---CHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHH-HHHHHHHhcCCCC
Confidence 2222222221100 0011 11222222111 11123567899999999988543 5666677777666
Q ss_pred CCeEEEEee
Q 027749 206 DLQVCCPGS 214 (219)
Q Consensus 206 ~~q~i~~SA 214 (219)
+.-+|+.|.
T Consensus 138 ~t~fiL~t~ 146 (319)
T PRK06090 138 NCLFLLVTH 146 (319)
T ss_pred CeEEEEEEC
Confidence 655555554
No 303
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.39 E-value=0.028 Score=49.50 Aligned_cols=37 Identities=14% Similarity=0.265 Sum_probs=22.2
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEE
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVC 210 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i 210 (219)
..+.+++|+||+|.+.... ...+.+.++..+.+.-+|
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a-~naLLk~LEepp~~~vfI 162 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGA-FNALLKTLEEPPPHIIFI 162 (507)
T ss_pred cCCcEEEEEEChhhcCHHH-HHHHHHHHhhcCCCEEEE
Confidence 3567899999999876543 333444455544443333
No 304
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.045 Score=50.28 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=16.1
Q ss_pred CcEEEEcCCCCchhHHhHHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALTV 91 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~ 91 (219)
+-+.++||||+|||.....-+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 347899999999996665543
No 305
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.32 E-value=0.066 Score=37.62 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.1
Q ss_pred ccEEEeccchhhhccc
Q 027749 176 IKLLVLDESDEMLSRG 191 (219)
Q Consensus 176 l~~lVvDE~h~l~~~~ 191 (219)
-.+|++||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4789999999988654
No 306
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.32 E-value=0.023 Score=45.57 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (219)
.|.=+++.|++|.|||. +++-+...+.... +..++|+..-. -..++..++-..... +....+..+.-...++..+
T Consensus 18 ~g~L~vi~a~pg~GKT~-~~l~ia~~~a~~~-~~~vly~SlEm-~~~~l~~R~la~~s~--v~~~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTA-FALQIALNAALNG-GYPVLYFSLEM-SEEELAARLLARLSG--VPYNKIRSGDLSDEEFERL 92 (259)
T ss_dssp TT-EEEEEESTTSSHHH-HHHHHHHHHHHTT-SSEEEEEESSS--HHHHHHHHHHHHHT--STHHHHHCCGCHHHHHHHH
T ss_pred cCcEEEEEecccCCchH-HHHHHHHHHHHhc-CCeEEEEcCCC-CHHHHHHHHHHHhhc--chhhhhhccccCHHHHHHH
Confidence 34458899999999994 4444444443332 24477776532 222333333222211 1111111111111222221
Q ss_pred ------cCCCeEEE-e----ChHHHHHHHHcCCCCCCCccEEEeccchhhhcc----ccHHHHHHHHHhCC-----CCCe
Q 027749 149 ------EHGVHVVS-G----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQIYDVYRYLP-----PDLQ 208 (219)
Q Consensus 149 ------~~~~~I~v-~----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~----~~~~~~~~i~~~~~-----~~~q 208 (219)
.....++| . |++.+...+..-.....++++||||-.|.+-.. +....+..+.+.+. .++.
T Consensus 93 ~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~ 172 (259)
T PF03796_consen 93 QAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIP 172 (259)
T ss_dssp HHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCe
Confidence 12333443 3 455666555432222267899999999987763 33444555444432 2667
Q ss_pred EEEEee
Q 027749 209 VCCPGS 214 (219)
Q Consensus 209 ~i~~SA 214 (219)
++++|.
T Consensus 173 vi~~sQ 178 (259)
T PF03796_consen 173 VIALSQ 178 (259)
T ss_dssp EEEEEE
T ss_pred EEEccc
Confidence 777775
No 307
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.034 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=16.1
Q ss_pred EEEEcCCCCchhHHhHHHHHhhh
Q 027749 73 VIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
.+++||.|+|||.++.. +...+
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHH
Confidence 59999999999966543 33444
No 308
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.29 E-value=0.042 Score=44.82 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+.++++.||+|+|||.++
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 457999999999999655
No 309
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.29 E-value=0.08 Score=42.81 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.6
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 027749 71 RDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~ 89 (219)
..+.+.+++|+|||..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~ 94 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAK 94 (270)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 5789999999999965554
No 310
>PRK07004 replicative DNA helicase; Provisional
Probab=96.25 E-value=0.021 Score=49.71 Aligned_cols=141 Identities=18% Similarity=0.218 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (219)
.|.-++|.|.+|.||| ++.+-+...+..... ..++|.. ...-..|+..++-.... ++....+..+.-..+++..+
T Consensus 212 ~g~liviaarpg~GKT-~~al~ia~~~a~~~~-~~v~~fS-lEM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~~~~ 286 (460)
T PRK07004 212 GGELIIVAGRPSMGKT-AFSMNIGEYVAVEYG-LPVAVFS-MEMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDWPKL 286 (460)
T ss_pred CCceEEEEeCCCCCcc-HHHHHHHHHHHHHcC-CeEEEEe-CCCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHHHHH
Confidence 3456788999999999 444444443322212 2244443 33344455554422111 12211111122222222221
Q ss_pred ------cCCCeEEE-----eChHHHHHHHHcCCCCCCCccEEEeccchhhhcc----ccHHHHHHHHHhCC-----CCCe
Q 027749 149 ------EHGVHVVS-----GTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQIYDVYRYLP-----PDLQ 208 (219)
Q Consensus 149 ------~~~~~I~v-----~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~----~~~~~~~~i~~~~~-----~~~q 208 (219)
..+..+.| .|+..+....+.-......+++||||=.+.|... +....+..+.+.++ -++.
T Consensus 287 ~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ip 366 (460)
T PRK07004 287 THAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVP 366 (460)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCe
Confidence 12345665 3444444433221111235889999999987532 12233445544442 2678
Q ss_pred EEEEee
Q 027749 209 VCCPGS 214 (219)
Q Consensus 209 ~i~~SA 214 (219)
++++|.
T Consensus 367 Vi~lsQ 372 (460)
T PRK07004 367 VIALSQ 372 (460)
T ss_pred EEEEec
Confidence 888875
No 311
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.04 Score=49.36 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=27.2
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++||||+|.|.... .+.+.+.++..|.+.-+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 567899999999887554 445566666666666666554
No 312
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.24 E-value=0.029 Score=50.21 Aligned_cols=39 Identities=10% Similarity=0.166 Sum_probs=25.1
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+-+++|+||+|.|.... ...+...++..|.+.-+|+.+
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 346789999999876433 445666666655554455444
No 313
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.23 E-value=0.037 Score=49.07 Aligned_cols=59 Identities=22% Similarity=0.363 Sum_probs=42.7
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCC---CceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
.++-++|+|..|||||.+++--+...+...+ ....++|+.|.+....-+.+.+=.++..
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhccC
Confidence 3456899999999999887765544443322 2233999999999998888887666543
No 314
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.22 E-value=0.039 Score=48.82 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=28.4
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
...+++|+||+|.|.... ...+.+.++..|+++.+|+.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 567899999999887543 455666777767777666654
No 315
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.20 E-value=0.26 Score=39.42 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHh----CCC-cEEEEcCCCCchhHHhH
Q 027749 55 KPSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~-~~lv~~~tG~GKT~~~~ 88 (219)
.+++.+.+++..+. .+. .+++.||.|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 34555566665543 333 58899999999994443
No 316
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.20 E-value=0.051 Score=43.02 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=34.6
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
.|..++|.|++|+|||...+--+...+.. +-+++|++ +.+-..++.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 35679999999999995544444444432 33477777 4556667777666554
No 317
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.032 Score=46.62 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=28.0
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEee
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGS 214 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 214 (219)
...+++|||++|.|.... .+.+.+.++.-|++.-+|+.|.
T Consensus 131 ~~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~t~fiL~t~ 170 (342)
T PRK06964 131 GGARVVVLYPAEALNVAA-ANALLKTLEEPPPGTVFLLVSA 170 (342)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhcCCCcCcEEEEEEC
Confidence 567899999999988554 4556666776666655555553
No 318
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.014 Score=48.63 Aligned_cols=135 Identities=10% Similarity=0.069 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHh----CCC---cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccc
Q 027749 56 PSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (219)
Q Consensus 56 ~~~~Q~~~~~~~~----~~~---~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (219)
.+|||+..|..+. +|+ -.++.||.|.||+..+.. +...+......... | + ..+..|+.+....
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~-~A~~LlC~~~~~~~----~----C-g~C~sC~~~~~g~ 72 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA-LSRWLMCQQPQGHK----S----C-GHCRGCQLMQAGT 72 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH-HHHHHcCCCCCCCC----C----C-CCCHHHHHHHcCC
Confidence 5678888887764 343 578999999999954433 33434322110000 0 0 0234444444333
Q ss_pred ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc--CCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCC
Q 027749 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~--~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~ 206 (219)
...+..+....+ +..| +-+.+..+... ..-.-...+++|+|+||.|.... .+.+.+.++.-|.+
T Consensus 73 HPD~~~i~p~~~----------~~~I---~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~ 138 (334)
T PRK07993 73 HPDYYTLTPEKG----------KSSL---GVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAA-ANALLKTLEEPPEN 138 (334)
T ss_pred CCCEEEEecccc----------cccC---CHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHH-HHHHHHHhcCCCCC
Confidence 233332221110 0011 12222222221 11123567899999999988553 56666677775555
Q ss_pred CeEEEEee
Q 027749 207 LQVCCPGS 214 (219)
Q Consensus 207 ~q~i~~SA 214 (219)
.-+|+.|.
T Consensus 139 t~fiL~t~ 146 (334)
T PRK07993 139 TWFFLACR 146 (334)
T ss_pred eEEEEEEC
Confidence 55555553
No 319
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.17 E-value=0.054 Score=42.77 Aligned_cols=40 Identities=20% Similarity=0.184 Sum_probs=24.7
Q ss_pred hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
..|.-++|.|++|+|||...+--+.+.+... +..++|+..
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 4566789999999999944433333333332 234777764
No 320
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.04 Score=49.50 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=15.9
Q ss_pred CcEEEEcCCCCchhHHhHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALT 90 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~ 90 (219)
+..|++||.|+|||.++.+.
T Consensus 39 ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35789999999999666553
No 321
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.15 E-value=0.037 Score=47.66 Aligned_cols=142 Identities=20% Similarity=0.261 Sum_probs=67.3
Q ss_pred HhCCCcEEEEcCCCCchhHHhHHHHHhhhc-cCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHH
Q 027749 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVD-TSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~-~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (219)
+..|.-++|.|++|.||| ++.+.+...+. .. +..++|+. ...-..|+..++..... ++....+..+.-...++
T Consensus 191 ~~~g~liviag~pg~GKT-~~al~ia~~~a~~~--g~~v~~fS-lEm~~~~l~~Rl~~~~~--~v~~~~~~~~~l~~~~~ 264 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKT-TLALNIAENVALRE--GKPVLFFS-LEMSAEQLGERLLASKS--GINTGNIRTGRFNDSDF 264 (421)
T ss_pred CCCCceEEEEeCCCCCHH-HHHHHHHHHHHHhC--CCcEEEEE-CCCCHHHHHHHHHHHHc--CCCHHHHhcCCCCHHHH
Confidence 334556889999999999 44444443332 32 22356664 23344455444432211 22221111111112222
Q ss_pred HHhc------CCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhcc---ccHHHHHHHHHhCC-----CC
Q 027749 146 RKLE------HGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR---GFKDQIYDVYRYLP-----PD 206 (219)
Q Consensus 146 ~~l~------~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~---~~~~~~~~i~~~~~-----~~ 206 (219)
..+. .+..+.|. |++.+...++.-......+++||||-.+.|... +....+..+.+.+. .+
T Consensus 265 ~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~~ 344 (421)
T TIGR03600 265 NRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELD 344 (421)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 2211 23345553 344444433321111235889999999887631 22233444433332 26
Q ss_pred CeEEEEee
Q 027749 207 LQVCCPGS 214 (219)
Q Consensus 207 ~q~i~~SA 214 (219)
+.++++|.
T Consensus 345 i~Vi~lsQ 352 (421)
T TIGR03600 345 VPVVLLAQ 352 (421)
T ss_pred CcEEEecc
Confidence 67777775
No 322
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.15 E-value=0.044 Score=49.00 Aligned_cols=37 Identities=14% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEE
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVC 210 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i 210 (219)
..+.+++||||+|.|....+ ..+.+.++..|.+.-+|
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~-naLLKtLEepp~~~ifI 153 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAF-NALLKTLEEPPAHVIFI 153 (559)
T ss_pred cCCeEEEEEECcccCCHHHH-HHHHHHhcCCCCCeEEE
Confidence 35678999999998865433 34444455544443333
No 323
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.13 E-value=0.033 Score=45.91 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCchhH
Q 027749 70 GRDVIAQAQSGTGKTS 85 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~ 85 (219)
++++++.|++|+|||.
T Consensus 156 ~~gl~L~G~~G~GKTh 171 (306)
T PRK08939 156 VKGLYLYGDFGVGKSY 171 (306)
T ss_pred CCeEEEECCCCCCHHH
Confidence 4679999999999993
No 324
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.12 E-value=0.07 Score=44.37 Aligned_cols=144 Identities=10% Similarity=0.084 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHHhC--C---CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 56 PSAIQQRAVMPIIK--G---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 56 ~~~~Q~~~~~~~~~--~---~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.+|||+..|..+.. + +..++.||.|.||+..+.. +...+......... .| + ..+..|+.+......
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~-~a~~llC~~~~~~~---~~----C-g~C~~C~~~~~~~Hp 72 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF-AAQALLCETPAPGH---KP----C-GECMSCHLFGQGSHP 72 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH-HHHHHcCCCCCCCC---CC----C-CcCHHHHHHhcCCCC
Confidence 36888888888762 3 2588999999999955433 33333321110000 00 0 123445555444333
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEE
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVC 210 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i 210 (219)
.+..+.......+.. +....|-|-.-..+.+.+.... .....+++|+|++|.|... ....+.+.++..+.+..+|
T Consensus 73 D~~~~~p~~~~~~~g---~~~~~I~id~iR~l~~~~~~~p-~~~~~kV~iiEp~~~Ld~~-a~naLLk~LEep~~~~~~I 147 (325)
T PRK08699 73 DFYEITPLSDEPENG---RKLLQIKIDAVREIIDNVYLTS-VRGGLRVILIHPAESMNLQ-AANSLLKVLEEPPPQVVFL 147 (325)
T ss_pred CEEEEeccccccccc---ccCCCcCHHHHHHHHHHHhhCc-ccCCceEEEEechhhCCHH-HHHHHHHHHHhCcCCCEEE
Confidence 333332111000000 0001121111122222222221 2356788999999987644 4666777777776555555
Q ss_pred EEe
Q 027749 211 CPG 213 (219)
Q Consensus 211 ~~S 213 (219)
+.|
T Consensus 148 lvt 150 (325)
T PRK08699 148 LVS 150 (325)
T ss_pred EEe
Confidence 544
No 325
>PRK08506 replicative DNA helicase; Provisional
Probab=96.11 E-value=0.036 Score=48.49 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEE-ECCcccHHHHH-
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGEDIR- 146 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 146 (219)
.|.-+++.|.+|.||| ++.+-+...+... +..++|... -.-..|+..++-.... ++....+ .|..+ ..++.
T Consensus 191 ~G~LivIaarpg~GKT-~fal~ia~~~~~~--g~~V~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~-~~e~~~ 263 (472)
T PRK08506 191 KGDLIIIAARPSMGKT-TLCLNMALKALNQ--DKGVAFFSL-EMPAEQLMLRMLSAKT--SIPLQNLRTGDLD-DDEWER 263 (472)
T ss_pred CCceEEEEcCCCCChH-HHHHHHHHHHHhc--CCcEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhcCCCC-HHHHHH
Confidence 3445788999999999 5555455444333 233555533 4455566665533222 2211111 12222 12222
Q ss_pred ------HhcCCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhccc----cHHHHHHHHHhC---C--CC
Q 027749 147 ------KLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYL---P--PD 206 (219)
Q Consensus 147 ------~l~~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~----~~~~~~~i~~~~---~--~~ 206 (219)
.+. +..+.|- |+..+...++.-......+++||||-.+.|...+ -...+..+.+.+ - .+
T Consensus 264 ~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ 342 (472)
T PRK08506 264 LSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELD 342 (472)
T ss_pred HHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 222 2345542 4555554443211112358999999999775322 123344443333 2 26
Q ss_pred CeEEEEee
Q 027749 207 LQVCCPGS 214 (219)
Q Consensus 207 ~q~i~~SA 214 (219)
+.++++|.
T Consensus 343 ipVi~lsQ 350 (472)
T PRK08506 343 IPIIALSQ 350 (472)
T ss_pred CcEEEEee
Confidence 77888774
No 326
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.09 E-value=0.035 Score=50.08 Aligned_cols=122 Identities=10% Similarity=0.098 Sum_probs=58.7
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (219)
..|++||.|+|||.++..-. ..+.........-+.-++..-| ..+..|+.+......++..+.+....
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA-k~L~c~~~~~~~~~~~~~~~~C-g~C~sC~~~~~g~~~n~~~~d~~s~~---------- 107 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA-KAVNCQRMIDDPVYLQEVTEPC-GECESCRDFDAGTSLNISEFDAASNN---------- 107 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH-HHhCCCCcCCccccccccCCCC-ccCHHHHHHhccCCCCeEEecccccC----------
Confidence 48899999999996665433 3332211000000000000101 12455665555545555444332221
Q ss_pred CeEEEeChHHHHHHHH---cCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 152 VHVVSGTPGRVCDMIK---RKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 152 ~~I~v~Tp~~l~~~l~---~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..+.+..+.. ... ...+-+++||||+|.|.... .+.+...++..|...-+|+.+
T Consensus 108 ------~vd~Ir~l~e~~~~~P-~~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 108 ------SVDDIRQLRENVRYGP-QKGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred ------CHHHHHHHHHHHHhhh-hcCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 0122222221 112 34567899999999987543 344555566655554455444
No 327
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.07 E-value=0.022 Score=48.22 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=19.6
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~ 96 (219)
.+..++|+|||||||| ..+..++..+.
T Consensus 148 ~~GlilI~G~TGSGKT-T~l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKS-TLAASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHH-HHHHHHHHHHH
Confidence 4457899999999999 44455555554
No 328
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.02 E-value=0.028 Score=51.50 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=38.8
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+--++|+|+-|.+.++....-+.+++++.|.+..+++.|-+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 34589999999999998889999999999999999999877663
No 329
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.087 Score=44.65 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 027749 70 GRDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~ 89 (219)
++.+++.||+|+|||....-
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45678999999999955444
No 330
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.97 E-value=0.14 Score=40.33 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=31.3
Q ss_pred hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
..|.-+++.|++|+|||....-.+...+. . +.+++++.. .+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~--g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQ-N--GYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHh-C--CCcEEEEeC-CCCHHHHHHHHHHh
Confidence 44667999999999999553333333322 2 345777774 33444555555443
No 331
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.082 Score=47.85 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=22.4
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEE
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCC 211 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~ 211 (219)
.+.+++||||+|.|.... ...+.+.++.-+...-+|+
T Consensus 120 ~~~KViIIDEad~Lt~~a-~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAA-FNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred CCceEEEEECccccCHHH-HHHHHHHHhcCCcCeEEEE
Confidence 456899999999886533 3444555555444443333
No 332
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.96 E-value=0.16 Score=38.56 Aligned_cols=40 Identities=8% Similarity=0.248 Sum_probs=25.7
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
...-+++||||+|.+.... ...+...++..+++.-+|+.+
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 3567899999999987543 445556666655554455443
No 333
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.95 E-value=0.02 Score=47.91 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=30.2
Q ss_pred HHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 65 MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 65 ~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
..+..+++++|+|+||+||| .++-.++..+... .+++.+-.+.++
T Consensus 157 ~~v~~~~nilI~G~tGSGKT-Tll~aLl~~i~~~---~rivtiEd~~El 201 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKT-TMSKTLISAIPPQ---ERLITIEDTLEL 201 (344)
T ss_pred HHHHcCCeEEEECCCCccHH-HHHHHHHcccCCC---CCEEEECCCccc
Confidence 34557789999999999999 5555555555332 236666666555
No 334
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.069 Score=48.08 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEE
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCC 211 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~ 211 (219)
....++|||||+|.|.... .+.+.+.++..+.+.-+|+
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCeEEEE
Confidence 3567899999999877543 3334444555444443443
No 335
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.91 E-value=0.018 Score=54.64 Aligned_cols=97 Identities=14% Similarity=-0.000 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccC-----------C----CceeEEEEcCCHHHHHHHHHHHHHhccccceeEE
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----------S----REVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-----------~----~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (219)
.|+.+++.-..|.|||.+-+...+...... . ...-+||++| .++..|+++++.+..... +.+.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhcccc-ceEE
Confidence 456678888899999988776555443111 1 1234899999 567789999998876553 6676
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHH
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK 167 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~ 167 (219)
...|-.+..-....-.-.+|||++|...|..-+.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~ 484 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELY 484 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhh
Confidence 6665333221111122368999999998876553
No 336
>PRK05748 replicative DNA helicase; Provisional
Probab=95.89 E-value=0.079 Score=46.08 Aligned_cols=142 Identities=20% Similarity=0.224 Sum_probs=67.3
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (219)
.|.-++|.|++|.||| ++.+.++....... +..++|+. ...-..|+..++..... ++....+..+.-...++..+
T Consensus 202 ~G~livIaarpg~GKT-~~al~ia~~~a~~~-g~~v~~fS-lEms~~~l~~R~l~~~~--~v~~~~i~~~~l~~~e~~~~ 276 (448)
T PRK05748 202 PNDLIIVAARPSVGKT-AFALNIAQNVATKT-DKNVAIFS-LEMGAESLVMRMLCAEG--NIDAQRLRTGQLTDDDWPKL 276 (448)
T ss_pred CCceEEEEeCCCCCch-HHHHHHHHHHHHhC-CCeEEEEe-CCCCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHHHHHH
Confidence 3456888999999999 55555554443221 22355543 33444555555532211 11111111121112222221
Q ss_pred ------cCCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhccc-----cHHHHHHHHHhCC-----CCC
Q 027749 149 ------EHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----FKDQIYDVYRYLP-----PDL 207 (219)
Q Consensus 149 ------~~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~-----~~~~~~~i~~~~~-----~~~ 207 (219)
..+..+.|. |++.+...++.-.....++++||||-.+.|...+ ....+..+.+.+. -++
T Consensus 277 ~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i 356 (448)
T PRK05748 277 TIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKV 356 (448)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCC
Confidence 123345542 4455554333211111268899999999874221 1233444444441 267
Q ss_pred eEEEEeec
Q 027749 208 QVCCPGSC 215 (219)
Q Consensus 208 q~i~~SAT 215 (219)
.++++|..
T Consensus 357 ~vi~lsQl 364 (448)
T PRK05748 357 PVIALSQL 364 (448)
T ss_pred eEEEeccc
Confidence 78877753
No 337
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.89 E-value=0.037 Score=45.83 Aligned_cols=61 Identities=16% Similarity=0.315 Sum_probs=40.2
Q ss_pred HHHHCCCCCChHHHHHHHHHHhCCC-cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 47 GIYQYGFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~~-~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
.|-++| ..++.|-..+..+..++ |++++|.|||||| ..+-.+...+.... ++|.+=-|.+|
T Consensus 151 dli~~g--t~~~~~a~~L~~av~~r~NILisGGTGSGKT-TlLNal~~~i~~~e---RvItiEDtaEL 212 (355)
T COG4962 151 DLIIFG--TMIRRAAKFLRRAVGIRCNILISGGTGSGKT-TLLNALSGFIDSDE---RVITIEDTAEL 212 (355)
T ss_pred HHHHcC--CcCHHHHHHHHHHHhhceeEEEeCCCCCCHH-HHHHHHHhcCCCcc---cEEEEeehhhh
Confidence 444444 67777888887777665 9999999999999 33333434443332 46766666555
No 338
>PRK05973 replicative DNA helicase; Provisional
Probab=95.88 E-value=0.18 Score=39.93 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=49.0
Q ss_pred ccCCCCHHHHHHHHHCCCC----------CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEE
Q 027749 36 DAMGIKDDLLRGIYQYGFE----------KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (219)
Q Consensus 36 ~~~~l~~~~~~~l~~~~~~----------~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~l 105 (219)
...+++..+-+.-.+.||. .++|. .+..--+..|.-++|.|++|+|||...+--+.+.+. + +.+++
T Consensus 21 ~~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~-~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-~--Ge~vl 96 (237)
T PRK05973 21 QNIPLHEALDRIAAEEGFSSWSLLAAKAAATTPA-EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-S--GRTGV 96 (237)
T ss_pred cCCcHHHHHHHHHHHhccchHHHHHHhccCCCCH-HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-c--CCeEE
Confidence 4456677777666676764 33442 222233445667899999999999544443333332 2 33466
Q ss_pred EEcCCHHHHHHHHHHHHHh
Q 027749 106 ILSPTRELATQTEKVILAI 124 (219)
Q Consensus 106 il~P~~~l~~q~~~~~~~~ 124 (219)
|+.-- +-..++.+.+..+
T Consensus 97 yfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 97 FFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEEEe-CCHHHHHHHHHHc
Confidence 66543 3356667776655
No 339
>PRK08006 replicative DNA helicase; Provisional
Probab=95.87 E-value=0.11 Score=45.52 Aligned_cols=140 Identities=20% Similarity=0.207 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEE-ECCcccHHHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGEDIRK 147 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 147 (219)
.|.-++|-|.+|.||| +|.+-+...+.... +..++|... -.-..|+..++-.... ++....+ .|..+. +++.+
T Consensus 223 ~G~LiiIaarPgmGKT-afalnia~~~a~~~-g~~V~~fSl-EM~~~ql~~Rlla~~~--~v~~~~i~~~~l~~-~e~~~ 296 (471)
T PRK08006 223 PSDLIIVAARPSMGKT-TFAMNLCENAAMLQ-DKPVLIFSL-EMPGEQIMMRMLASLS--RVDQTRIRTGQLDD-EDWAR 296 (471)
T ss_pred CCcEEEEEeCCCCCHH-HHHHHHHHHHHHhc-CCeEEEEec-cCCHHHHHHHHHHHhc--CCCHHHhhcCCCCH-HHHHH
Confidence 3445778899999999 55555554443221 223555433 3444555555533222 2222111 122222 22222
Q ss_pred -------hcCCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhcc----ccHHHHHHHHHhCC-----CC
Q 027749 148 -------LEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQIYDVYRYLP-----PD 206 (219)
Q Consensus 148 -------l~~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~----~~~~~~~~i~~~~~-----~~ 206 (219)
+.....+.|- |+..+....+.-......+++||||=.+.|... +-...+..+.+.++ -+
T Consensus 297 ~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ 376 (471)
T PRK08006 297 ISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQ 376 (471)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 2133445553 455554433221111135899999999987532 22334455544442 26
Q ss_pred CeEEEEee
Q 027749 207 LQVCCPGS 214 (219)
Q Consensus 207 ~q~i~~SA 214 (219)
+.+|++|.
T Consensus 377 ipVi~LsQ 384 (471)
T PRK08006 377 VPVVALSQ 384 (471)
T ss_pred CeEEEEEe
Confidence 77888874
No 340
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.87 E-value=0.093 Score=44.70 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=25.5
Q ss_pred hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
-.|..+++.||+|+|||.. +..+...+..+.....+++++.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL-~~~i~~~I~~nhfdv~v~VlLI 206 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL-LQKIAQAITRNHPEVELIVLLI 206 (415)
T ss_pred CCCCEEEEECCCCCChhHH-HHHHHHhhcccCCceEEEEEEc
Confidence 4678899999999999953 3334455444423334444443
No 341
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.86 E-value=0.042 Score=45.83 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=28.8
Q ss_pred HHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 66 ~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
.+..+++++|+|+||+||| .++-.++..+... -+++.+=-+.++
T Consensus 156 ~v~~~~nili~G~tgSGKT-Tll~aL~~~ip~~---~ri~tiEd~~El 199 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKT-TFTNAALREIPAI---ERLITVEDAREI 199 (332)
T ss_pred HHHcCCcEEEECCCCCCHH-HHHHHHHhhCCCC---CeEEEecCCCcc
Confidence 3457789999999999999 5555666655432 235555444443
No 342
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.86 E-value=0.19 Score=38.36 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=55.9
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (219)
=.++.+|+.+|||...+- ..++.... +.++++..|-..- ..+...+...-|. +.
T Consensus 6 l~~i~gpM~SGKT~eLl~-r~~~~~~~--g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~----------~~ 59 (201)
T COG1435 6 LEFIYGPMFSGKTEELLR-RARRYKEA--GMKVLVFKPAIDT-------------RYGVGKVSSRIGL----------SS 59 (201)
T ss_pred EEEEEccCcCcchHHHHH-HHHHHHHc--CCeEEEEeccccc-------------ccccceeeeccCC----------cc
Confidence 357899999999954333 33333333 3447777774211 0011111111111 11
Q ss_pred CeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 152 ~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
.-++|-.+..+.+.+....-.. .++.|.||||+- ++......+.++.+.+
T Consensus 60 ~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF-~~~~~v~~l~~lad~l 109 (201)
T COG1435 60 EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQF-FDEELVYVLNELADRL 109 (201)
T ss_pred cceecCChHHHHHHHHhcccCC-CcCEEEEehhHh-CCHHHHHHHHHHHhhc
Confidence 3456667777777666543222 288999999974 4444455566665554
No 343
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.78 E-value=0.049 Score=44.35 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 027749 71 RDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~ 89 (219)
+.++++||||+|||....-
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999955543
No 344
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.087 Score=44.54 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=27.5
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEee
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGS 214 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 214 (219)
...+++||||+|.|.... .+.+.+.++..+.+..+|++|.
T Consensus 140 ~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~ 179 (365)
T PRK07471 140 GGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSH 179 (365)
T ss_pred CCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEEC
Confidence 567789999999876443 4556666777665665666553
No 345
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.77 E-value=0.078 Score=45.87 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchhHHhHH
Q 027749 72 DVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~ 89 (219)
.++++|++|+|||....-
T Consensus 97 vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 478999999999965543
No 346
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.75 E-value=0.036 Score=43.64 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=23.8
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCe
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q 208 (219)
..+-+.||+||||-|.+. ....+++.++.-.+.++
T Consensus 111 ~grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttR 145 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTR 145 (333)
T ss_pred CCceeEEEeeccchhhhH-HHHHHHHHHHHHcccch
Confidence 467789999999987743 35566666665544443
No 347
>PRK08840 replicative DNA helicase; Provisional
Probab=95.75 E-value=0.12 Score=45.26 Aligned_cols=142 Identities=20% Similarity=0.221 Sum_probs=68.2
Q ss_pred HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEE-ECCcccHHHH
Q 027749 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGEDI 145 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 145 (219)
+..|.-+++.|.+|.||| ++.+-+...+.... +..++|... ..-..|+..++-.... ++....+ .|..+. +++
T Consensus 214 ~~~g~LiviaarPg~GKT-afalnia~~~a~~~-~~~v~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~-~e~ 287 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKT-TFAMNLCENAAMDQ-DKPVLIFSL-EMPAEQLMMRMLASLS--RVDQTKIRTGQLDD-EDW 287 (464)
T ss_pred CCCCceEEEEeCCCCchH-HHHHHHHHHHHHhC-CCeEEEEec-cCCHHHHHHHHHHhhC--CCCHHHHhcCCCCH-HHH
Confidence 334456788899999999 44454444443222 223554433 3445556555533222 1211111 122222 222
Q ss_pred HH-------hcCCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhccc----cHHHHHHHHHhCC-----
Q 027749 146 RK-------LEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP----- 204 (219)
Q Consensus 146 ~~-------l~~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~----~~~~~~~i~~~~~----- 204 (219)
.. +.....+.|- |+..+....+.-......+++||||-.+.|...+ ....+..+.+.++
T Consensus 288 ~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke 367 (464)
T PRK08840 288 ARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKE 367 (464)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 22 2123345552 3444443322211111358899999999875222 1233444444432
Q ss_pred CCCeEEEEee
Q 027749 205 PDLQVCCPGS 214 (219)
Q Consensus 205 ~~~q~i~~SA 214 (219)
-++.++++|.
T Consensus 368 l~ipVi~LsQ 377 (464)
T PRK08840 368 LNVPVVALSQ 377 (464)
T ss_pred hCCeEEEEEe
Confidence 2677888874
No 348
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.13 Score=43.45 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=19.2
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
..-+||+||+|.|.+..- ..+..+++..
T Consensus 123 ~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 123 KTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred CeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 445799999999987643 5555555554
No 349
>PTZ00293 thymidine kinase; Provisional
Probab=95.68 E-value=0.11 Score=40.36 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=24.2
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~ 110 (219)
|+=.++.||+++||| .-++-.+++.... +.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKT-teLLr~i~~y~~a--g~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKT-TELMRLVKRFTYS--EKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHH-HHHHHHHHHHHHc--CCceEEEEec
Confidence 334578999999999 4344444444433 2347777774
No 350
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.65 E-value=0.14 Score=45.18 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCCchhHHhHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~ 89 (219)
.|+.+.++||+|+|||.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456788999999999965533
No 351
>PRK06620 hypothetical protein; Validated
Probab=95.65 E-value=0.028 Score=43.82 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=12.8
Q ss_pred CcEEEEcCCCCchh
Q 027749 71 RDVIAQAQSGTGKT 84 (219)
Q Consensus 71 ~~~lv~~~tG~GKT 84 (219)
+.++++||+|+|||
T Consensus 45 ~~l~l~Gp~G~GKT 58 (214)
T PRK06620 45 FTLLIKGPSSSGKT 58 (214)
T ss_pred ceEEEECCCCCCHH
Confidence 45899999999999
No 352
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.60 E-value=0.14 Score=42.38 Aligned_cols=55 Identities=13% Similarity=0.255 Sum_probs=31.7
Q ss_pred HHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCC---CCCeEEEEee
Q 027749 160 GRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP---PDLQVCCPGS 214 (219)
Q Consensus 160 ~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~---~~~q~i~~SA 214 (219)
.+++..++.+....+.=-.+|+||.|-.........+..+++... ..+=++++|.
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 455556665544333334689999997666655556666666543 2333555543
No 353
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.59 E-value=0.17 Score=47.72 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=34.1
Q ss_pred cEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 177 KLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 177 ~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
-+||||++|.+-+......+..+++.+|.+..+|+.|-+.|
T Consensus 123 ~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 123 LYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred EEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 47999999998666667789999999998889888887644
No 354
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.13 Score=46.59 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=26.3
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
....+++||||+|.|.... ...+...++..|.+.-+|+.+
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999986543 455666666655554444433
No 355
>PRK09183 transposase/IS protein; Provisional
Probab=95.55 E-value=0.072 Score=42.82 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=17.3
Q ss_pred HhCCCcEEEEcCCCCchhHHh
Q 027749 67 IIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~ 87 (219)
+..+.++++.||+|+|||...
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa 119 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLA 119 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHH
Confidence 456789999999999999443
No 356
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.50 E-value=0.21 Score=39.06 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=29.8
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
.|..+++.|++|+|||.....-+.+.+. . +..++++.- .+...++.+....+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~--g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR-D--GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh-c--CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 4567999999999999544333333332 2 234666654 33445555554443
No 357
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.49 E-value=0.061 Score=45.10 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=25.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (219)
.++|+|||.|+|||..+-+.+ ... .....+.|=+..|.+-++++...+
T Consensus 163 pSmIlWGppG~GKTtlArlia-~ts--k~~SyrfvelSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIA-STS--KKHSYRFVELSATNAKTNDVRDIF 210 (554)
T ss_pred CceEEecCCCCchHHHHHHHH-hhc--CCCceEEEEEeccccchHHHHHHH
Confidence 379999999999994332211 111 111234455555555554444443
No 358
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=95.47 E-value=0.18 Score=43.90 Aligned_cols=39 Identities=10% Similarity=0.211 Sum_probs=25.1
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+-+++||||+|.|.... ...+.+.++..+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 456789999999887543 344555566655555555543
No 359
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.47 E-value=0.11 Score=43.47 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=22.7
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
...-++||+||+|.+.... ...+.+.++..|.+..+|+.
T Consensus 115 ~~~~~vviidea~~l~~~~-~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 115 SGKYKVYIIDEVHMLSKSA-FNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred cCCceEEEEeChhhcCHHH-HHHHHHHHhCCccceeEEEE
Confidence 3456789999999876433 23344444554444444443
No 360
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.46 E-value=0.42 Score=40.07 Aligned_cols=39 Identities=18% Similarity=0.212 Sum_probs=27.3
Q ss_pred CCCCcceeeccCCCCccCccccCCCCHHHHHHHHHCCCC
Q 027749 16 MDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFE 54 (219)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 54 (219)
.+.++...+.+..+.++......++++...+.|++.|+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~ 53 (344)
T PLN03187 15 LVEAEEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIY 53 (344)
T ss_pred hhhhhhhhhhhhcccCHHHHhhCCCCHHHHHHHHHcCCC
Confidence 333334444444466777777888999999999988886
No 361
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.46 E-value=0.075 Score=45.71 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHhH
Q 027749 71 RDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~ 88 (219)
.++++.||.|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 379999999999995443
No 362
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.44 E-value=0.069 Score=45.88 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=23.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
|+-+.+.||+|+|||....................++...+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ 232 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSY 232 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence 455889999999999665433322222222222355555553
No 363
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.37 E-value=0.2 Score=38.76 Aligned_cols=42 Identities=19% Similarity=0.335 Sum_probs=25.9
Q ss_pred ChHHHHHHHHcCCCCCCCccEEEeccchhhh-c----cccHHHHHHHHHhC
Q 027749 158 TPGRVCDMIKRKTLRTRAIKLLVLDESDEML-S----RGFKDQIYDVYRYL 203 (219)
Q Consensus 158 Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~-~----~~~~~~~~~i~~~~ 203 (219)
+...+...+..... + -+||+||+|.+. . ..+...+..+++..
T Consensus 105 ~l~~~~~~l~~~~~---~-~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 105 ALERLLEKLKKKGK---K-VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp -HHHHHHHHHHCHC---C-EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCC---c-EEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 44555555554331 1 679999999998 2 24566677777763
No 364
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.37 E-value=0.12 Score=44.12 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=25.2
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.+++||||+|.|.... .+.+.+.++.-+++.-+|+.+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEE
Confidence 567899999999987543 345555666655554444433
No 365
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.36 E-value=0.046 Score=44.81 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=13.7
Q ss_pred CcEEEEcCCCCchhHH
Q 027749 71 RDVIAQAQSGTGKTSM 86 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~ 86 (219)
.+++++||.|+|||..
T Consensus 31 ~~~ll~Gp~G~GKT~l 46 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTL 46 (305)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4699999999999933
No 366
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.36 E-value=0.29 Score=39.02 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=20.9
Q ss_pred HHHhCCC-cEEEEcCCCCchhHHhHHHHHhhhc
Q 027749 65 MPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVD 96 (219)
Q Consensus 65 ~~~~~~~-~~lv~~~tG~GKT~~~~~~~~~~~~ 96 (219)
+.+..|+ -+.++|+.|+|||...- .+.....
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~ 76 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR-ALLASLN 76 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH-HHHHhcC
Confidence 3445555 67899999999996665 4444433
No 367
>PRK08760 replicative DNA helicase; Provisional
Probab=95.33 E-value=0.21 Score=43.88 Aligned_cols=140 Identities=21% Similarity=0.238 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (219)
.|.-++|.|.+|.||| ++.+-+...+.... +..++|... ..-..|+..++..........-. ..|..+ ..++..+
T Consensus 228 ~G~LivIaarPg~GKT-afal~iA~~~a~~~-g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~i-~~g~l~-~~e~~~~ 302 (476)
T PRK08760 228 PTDLIILAARPAMGKT-TFALNIAEYAAIKS-KKGVAVFSM-EMSASQLAMRLISSNGRINAQRL-RTGALE-DEDWARV 302 (476)
T ss_pred CCceEEEEeCCCCChh-HHHHHHHHHHHHhc-CCceEEEec-cCCHHHHHHHHHHhhCCCcHHHH-hcCCCC-HHHHHHH
Confidence 3445788999999999 55554544443221 223555533 33445566655433222221111 112222 2222211
Q ss_pred ------cCCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhccc----cHHHHHHHHHhCC---C--CCe
Q 027749 149 ------EHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP---P--DLQ 208 (219)
Q Consensus 149 ------~~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~----~~~~~~~i~~~~~---~--~~q 208 (219)
..+..+.|. |++.+...++.-. .-..+++||||-.+.|...+ ....+..+.+.+. + ++.
T Consensus 303 ~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ip 381 (476)
T PRK08760 303 TGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVP 381 (476)
T ss_pred HHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCE
Confidence 122345543 4555554333211 11358899999998774322 2233444444432 2 677
Q ss_pred EEEEee
Q 027749 209 VCCPGS 214 (219)
Q Consensus 209 ~i~~SA 214 (219)
++++|.
T Consensus 382 Vi~lsQ 387 (476)
T PRK08760 382 VIALSQ 387 (476)
T ss_pred EEEeec
Confidence 787774
No 368
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.30 E-value=0.056 Score=45.55 Aligned_cols=26 Identities=15% Similarity=0.365 Sum_probs=19.1
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
.+..++|+||||+|||.. +..++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 566899999999999943 34455544
No 369
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.27 E-value=0.21 Score=40.45 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchhHHhHHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALTV 91 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~ 91 (219)
+-++++|++|+|||....-.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA 93 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLA 93 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 357788999999996554433
No 370
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.27 E-value=0.27 Score=42.75 Aligned_cols=88 Identities=20% Similarity=0.235 Sum_probs=49.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (219)
|.-+++.|++|+|||...+. ++..+... +.+++|+.- .+...|+......+.... .
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq-~a~~~a~~--g~~vlYvs~-Ees~~qi~~ra~rlg~~~--~------------------ 135 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQ-VAARLAAA--GGKVLYVSG-EESASQIKLRAERLGLPS--D------------------ 135 (446)
T ss_pred CEEEEEECCCCCCHHHHHHH-HHHHHHhc--CCeEEEEEc-cccHHHHHHHHHHcCCCh--h------------------
Confidence 45688999999999944433 33333322 345788775 344566666655543211 0
Q ss_pred CCCeEEEeC---hHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 150 HGVHVVSGT---PGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 150 ~~~~I~v~T---p~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
++.+.. .+.+...+.. .+.++||+|+++.+..
T Consensus 136 ---~l~~~~e~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 136 ---NLYLLAETNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred ---cEEEeCCCCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 022222 2333444332 3567999999998764
No 371
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.24 E-value=0.12 Score=45.39 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=68.4
Q ss_pred HhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc----CCCeEEEeChHH
Q 027749 86 MIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGR 161 (219)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~I~v~Tp~~ 161 (219)
.-+..++.... ...+.++||.|.|+--|.++...++.. +....+++|..+..++-..+. ..+.|+|+|.
T Consensus 327 ~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd-- 399 (519)
T KOG0331|consen 327 RKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD-- 399 (519)
T ss_pred HHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc--
Confidence 34445555555 344568999999999998888877654 478889999999887755553 3689999994
Q ss_pred HHHHHHcCCCCCCCccEEEe--------ccchhhhcc
Q 027749 162 VCDMIKRKTLRTRAIKLLVL--------DESDEMLSR 190 (219)
Q Consensus 162 l~~~l~~~~~~~~~l~~lVv--------DE~h~l~~~ 190 (219)
+-.+++++.++++||- |-+|++...
T Consensus 400 ----VAaRGLDi~dV~lVInydfP~~vEdYVHRiGRT 432 (519)
T KOG0331|consen 400 ----VAARGLDVPDVDLVINYDFPNNVEDYVHRIGRT 432 (519)
T ss_pred ----cccccCCCccccEEEeCCCCCCHHHHHhhcCcc
Confidence 2347789999999874 456766543
No 372
>PRK05636 replicative DNA helicase; Provisional
Probab=95.24 E-value=0.099 Score=46.13 Aligned_cols=138 Identities=18% Similarity=0.238 Sum_probs=63.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc-
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE- 149 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 149 (219)
.-++|.|.+|.|||.. .+.++..+.... +..++|. ....-..|+..++-.... ++....+..+.-..+++..+.
T Consensus 266 ~Liiiaarpg~GKT~~-al~~a~~~a~~~-g~~v~~f-SlEMs~~ql~~R~ls~~s--~v~~~~i~~g~l~~~e~~~~~~ 340 (505)
T PRK05636 266 QMIIVAARPGVGKSTL-ALDFMRSASIKH-NKASVIF-SLEMSKSEIVMRLLSAEA--EVRLSDMRGGKMDEDAWEKLVQ 340 (505)
T ss_pred ceEEEEeCCCCCHHHH-HHHHHHHHHHhC-CCeEEEE-EeeCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHHHHH
Confidence 4468899999999944 444444332221 2234554 223333444444422211 121111122222222322221
Q ss_pred -----CCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhccc----cHHHHHHHHHhC---CC--CCeEE
Q 027749 150 -----HGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYL---PP--DLQVC 210 (219)
Q Consensus 150 -----~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~----~~~~~~~i~~~~---~~--~~q~i 210 (219)
....+.|- |...+....+.-.. -..+++||||-.+.|.... ....+..+.+.+ -+ ++.+|
T Consensus 341 a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipVi 419 (505)
T PRK05636 341 RLGKIAQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVPLI 419 (505)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 23445552 33334332222111 1358899999999875321 123344444443 22 67788
Q ss_pred EEee
Q 027749 211 CPGS 214 (219)
Q Consensus 211 ~~SA 214 (219)
++|.
T Consensus 420 ~lsQ 423 (505)
T PRK05636 420 AISQ 423 (505)
T ss_pred EEee
Confidence 8874
No 373
>PRK06321 replicative DNA helicase; Provisional
Probab=95.23 E-value=0.22 Score=43.62 Aligned_cols=151 Identities=18% Similarity=0.274 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHhCC----CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccccee
Q 027749 56 PSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (219)
Q Consensus 56 ~~~~Q~~~~~~~~~~----~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (219)
||.+. .+..+..| .=++|.|.+|.||| +|.+-+...+....+. .++|.. ...-..|+..++..... ++.
T Consensus 210 ~tG~~--~LD~~t~Gl~~G~LiiiaarPgmGKT-afal~ia~~~a~~~g~-~v~~fS-LEMs~~ql~~Rlla~~s--~v~ 282 (472)
T PRK06321 210 PTHFI--DLDKMINGFSPSNLMILAARPAMGKT-ALALNIAENFCFQNRL-PVGIFS-LEMTVDQLIHRIICSRS--EVE 282 (472)
T ss_pred ccCcH--HHHHHhcCCCCCcEEEEEeCCCCChH-HHHHHHHHHHHHhcCC-eEEEEe-ccCCHHHHHHHHHHhhc--CCC
Confidence 45443 44555443 34678899999999 5555555554322122 244443 23344455555432211 222
Q ss_pred EEEEECCcccHHHHHHhc------CCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhccc-------cH
Q 027749 132 AHACVGGKSVGEDIRKLE------HGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-------FK 193 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~~l~------~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~-------~~ 193 (219)
...+..+.-...++..+. .+..+.|- |.+.+...++.-. .-..+++||||-.+.|...+ ..
T Consensus 283 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~-~~~~~~lvvIDyLql~~~~~~~~~~~~r~ 361 (472)
T PRK06321 283 SKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMK-ESYDIQFLIIDYLQLLSGSGNLRNSESRQ 361 (472)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEcchHHcCCCCccCCcchHH
Confidence 211111221222232211 12345553 4445544333211 11358899999999875321 12
Q ss_pred HHHHHHHHhCC-----CCCeEEEEee
Q 027749 194 DQIYDVYRYLP-----PDLQVCCPGS 214 (219)
Q Consensus 194 ~~~~~i~~~~~-----~~~q~i~~SA 214 (219)
..+..+.+.++ -++.+|++|.
T Consensus 362 ~ei~~Isr~LK~lAkel~vpVi~lsQ 387 (472)
T PRK06321 362 TEISEISRMLKNLARELNIPILCLSQ 387 (472)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 34445544443 2677888775
No 374
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.14 Score=45.00 Aligned_cols=69 Identities=23% Similarity=0.292 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHH-------HhCC-----CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEE
Q 027749 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMP-------IIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (219)
Q Consensus 38 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-------~~~~-----~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~l 105 (219)
++.++.-++.+...|.-.-.+.-.+.+.. +... .++++.||.|+|||..+. .+......|++=
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA-----~iA~~S~FPFvK 568 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA-----KIALSSDFPFVK 568 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH-----HHHhhcCCCeEE
Confidence 46777777777776654333322333322 1111 368999999999993221 222233457777
Q ss_pred EEcCCH
Q 027749 106 ILSPTR 111 (219)
Q Consensus 106 il~P~~ 111 (219)
++.|..
T Consensus 569 iiSpe~ 574 (744)
T KOG0741|consen 569 IISPED 574 (744)
T ss_pred EeChHH
Confidence 777743
No 375
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.15 E-value=0.22 Score=42.46 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=35.3
Q ss_pred HHHHHHHHHH---hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 58 AIQQRAVMPI---IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 58 ~~Q~~~~~~~---~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
+.-.+++..+ -.|...+|.||.|+|||.. +-.+...+..+.....++|++ ..+-...+.+..+.+
T Consensus 154 ~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~nhFDv~~~VvL-IgER~~EVtdiqrsI 221 (416)
T PRK09376 154 DLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSITTNHPEVHLIVLL-IDERPEEVTDMQRSV 221 (416)
T ss_pred ccceeeeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHHhhcCCeEEEEEE-eCCchhHHHHHHHHh
Confidence 3334455543 3788899999999999943 333445444432233333332 333334444444444
No 376
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.18 Score=43.01 Aligned_cols=43 Identities=12% Similarity=0.273 Sum_probs=29.7
Q ss_pred CccEEEeccchhhhcc-ccHHHHHHHHHhCCCC-CeEEEEeeccc
Q 027749 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPD-LQVCCPGSCFL 217 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~~-~q~i~~SATl~ 217 (219)
.++++++|+++.+... .....+..+++.+..+ .|+++-|...|
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P 219 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPP 219 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCc
Confidence 6889999999987754 4466677777776543 36666665554
No 377
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.08 E-value=0.3 Score=41.43 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=49.3
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (219)
|.-+++.|++|+|||...+. ++..+... +.+++|+.-. +-..|+..+...+.... .
T Consensus 82 GslvLI~G~pG~GKStLllq-~a~~~a~~--g~~VlYvs~E-Es~~qi~~Ra~rlg~~~--~------------------ 137 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQ-VAARLAKR--GGKVLYVSGE-ESPEQIKLRADRLGIST--E------------------ 137 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHH-HHHHHHhc--CCeEEEEECC-cCHHHHHHHHHHcCCCc--c------------------
Confidence 45688999999999944433 33333332 2357887654 33456655554442110 0
Q ss_pred CCCeEEEe---ChHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 150 HGVHVVSG---TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 150 ~~~~I~v~---Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
++.+. ..+.+...+.. .+.++||||+++.+..
T Consensus 138 ---~l~l~~e~~le~I~~~i~~-----~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 138 ---NLYLLAETNLEDILASIEE-----LKPDLVIIDSIQTVYS 172 (372)
T ss_pred ---cEEEEccCcHHHHHHHHHh-----cCCcEEEEcchHHhhc
Confidence 11111 23444444432 3578999999998763
No 378
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.08 E-value=0.36 Score=41.53 Aligned_cols=21 Identities=33% Similarity=0.376 Sum_probs=15.8
Q ss_pred cEEEEcCCCCchhHHhHHHHH
Q 027749 72 DVIAQAQSGTGKTSMIALTVC 92 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~ 92 (219)
-+++.||+|+|||....-.+.
T Consensus 225 vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 377999999999966554433
No 379
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.05 E-value=0.29 Score=42.38 Aligned_cols=139 Identities=19% Similarity=0.191 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHH---
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI--- 145 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 145 (219)
.|.-++|.|++|+||| ++.+-++..+.... +..++|+.. ..-..++..++...... +....+..+.-...++
T Consensus 194 ~G~l~vi~g~pg~GKT-~~~l~~a~~~a~~~-g~~vl~~Sl-Em~~~~i~~R~~~~~~~--v~~~~~~~g~l~~~~~~~~ 268 (434)
T TIGR00665 194 PSDLIILAARPSMGKT-AFALNIAENAAIKE-GKPVAFFSL-EMSAEQLAMRMLSSESR--VDSQKLRTGKLSDEDWEKL 268 (434)
T ss_pred CCeEEEEEeCCCCChH-HHHHHHHHHHHHhC-CCeEEEEeC-cCCHHHHHHHHHHHhcC--CCHHHhccCCCCHHHHHHH
Confidence 3456789999999999 44444444432211 223555543 33445555555333222 2211111121111222
Q ss_pred ----HHhcCCCeEEE-----eChHHHHHHHHcCCCCCCCccEEEeccchhhhccc----cHHHHHHHHHhCC-----CCC
Q 027749 146 ----RKLEHGVHVVS-----GTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP-----PDL 207 (219)
Q Consensus 146 ----~~l~~~~~I~v-----~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~----~~~~~~~i~~~~~-----~~~ 207 (219)
..+. +..+.| .|++.+...+..-.. -..+++||||-.+.+...+ ....+..+.+.+. .++
T Consensus 269 ~~a~~~l~-~~~l~i~d~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i 346 (434)
T TIGR00665 269 TSAAGKLS-EAPLYIDDTPGLTITELRAKARRLKR-EHGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKELNV 346 (434)
T ss_pred HHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 2222 234444 244555543332111 1247899999998775322 2233444444432 367
Q ss_pred eEEEEee
Q 027749 208 QVCCPGS 214 (219)
Q Consensus 208 q~i~~SA 214 (219)
.++++|.
T Consensus 347 ~vi~lsq 353 (434)
T TIGR00665 347 PVIALSQ 353 (434)
T ss_pred eEEEEec
Confidence 7777774
No 380
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.05 E-value=0.11 Score=48.17 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=27.9
Q ss_pred CccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHH
Q 027749 33 TSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~ 86 (219)
.+|++++-....++.+.+. -+..|.-++.. .+..++.+++.||+|+|||..
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~---gi~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHL---GIEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc---CCCCCceEEEECCCCCChHHH
Confidence 4566665555555555432 11122111111 123457899999999999943
No 381
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.04 E-value=0.32 Score=42.80 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=23.3
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEE
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCC 211 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~ 211 (219)
..+.+++|+||+|.|.... .+.+...++..|.+.-+|+
T Consensus 117 ~~~~KVvIIDEad~Lt~~a-~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEA-FNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred cCCeeEEEEEChhhcCHHH-HHHHHHHHhcCCCCeEEEE
Confidence 3567899999999876443 3344455555444443443
No 382
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.03 E-value=0.069 Score=46.44 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhCCC--cEEEEcCCCCchhHHhHHHHHhhhccC
Q 027749 57 SAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTS 98 (219)
Q Consensus 57 ~~~Q~~~~~~~~~~~--~~lv~~~tG~GKT~~~~~~~~~~~~~~ 98 (219)
.+.|...+..+.+.. =++|.|||||||| .-+..++..+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKT-TTLY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKT-TTLYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHH-HHHHHHHHHhcCC
Confidence 566666776666543 3789999999999 4445555655443
No 383
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.99 E-value=0.19 Score=44.98 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEE
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCC 211 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~ 211 (219)
..+.+++|+||+|.|.... .+.+.+.++..|...-+|+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCCCCEEEEE
Confidence 3567899999999886543 3334444555444433333
No 384
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.96 E-value=0.043 Score=49.26 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHH----hCCCcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 55 KPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 55 ~~~~~Q~~~~~~~----~~~~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
+|+.+|...+..+ ..|+=.|+.+|||+|||+..+=..+..+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 7889998877654 4788889999999999987765555544
No 385
>PRK04328 hypothetical protein; Provisional
Probab=94.95 E-value=0.39 Score=38.35 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=32.1
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
.|..++|.|++|+|||...+--+...+.. +-+++|+. +.+-..++.+.+..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 35678999999999995443334443333 22366665 4445555666665554
No 386
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.94 E-value=0.14 Score=38.93 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=29.6
Q ss_pred HHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 48 IYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
|.+.|. .++.|...+.. +..+..+++.||||+|||... -.++..+
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i 49 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFI 49 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhc
Confidence 445554 45556666655 456789999999999999443 3344444
No 387
>PRK09165 replicative DNA helicase; Provisional
Probab=94.90 E-value=0.22 Score=43.92 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccC------------CCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEEC
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS------------SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG 137 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~------------~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 137 (219)
|.-++|.|++|.|||...+--+.+..... ..+..++|+ ....-..|+..++.......... .+..
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~f-SlEMs~~ql~~R~la~~s~v~~~--~i~~ 293 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFF-SLEMSAEQLATRILSEQSEISSS--KIRR 293 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEE-eCcCCHHHHHHHHHHHhcCCCHH--HHhc
Confidence 34578899999999944433222222221 113345555 34445566666654332222211 1111
Q ss_pred CcccHHHHHHhc------CCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhccc------cHHHHHHHH
Q 027749 138 GKSVGEDIRKLE------HGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG------FKDQIYDVY 200 (219)
Q Consensus 138 ~~~~~~~~~~l~------~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~------~~~~~~~i~ 200 (219)
+.-...++..+. ....+.|- |++.+...++.-.. -..+++||||=.+.|...+ ....+..+.
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~is 372 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRGSSKRSSDNRVQEISEIT 372 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccCCCCCCCCchHHHHHHHH
Confidence 221222222221 12345542 45555544432111 1358899999999775322 112344443
Q ss_pred Hh---CC--CCCeEEEEee
Q 027749 201 RY---LP--PDLQVCCPGS 214 (219)
Q Consensus 201 ~~---~~--~~~q~i~~SA 214 (219)
+. +- .++.++++|.
T Consensus 373 ~~LK~lAkel~ipVi~lsQ 391 (497)
T PRK09165 373 QGLKALAKELNIPVIALSQ 391 (497)
T ss_pred HHHHHHHHHhCCeEEEeec
Confidence 33 32 2677777775
No 388
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.86 E-value=0.24 Score=39.55 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=21.1
Q ss_pred HhCCCcEEEEcCCCCchhHHhHHHHHhhhcc
Q 027749 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~ 97 (219)
+-.|..+++.|+.|+|||. .+-.++..+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTT-Llr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT-LLQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHH-HHHHHHhcccc
Confidence 3478899999999999994 33334444443
No 389
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.85 E-value=0.099 Score=47.86 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=25.5
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..+.+++|+||+|.|.... ...+...++..|....+|+.+
T Consensus 116 ~g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred cCCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 3567899999999876443 444555566655555444443
No 390
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.79 E-value=0.06 Score=43.38 Aligned_cols=44 Identities=14% Similarity=0.322 Sum_probs=29.6
Q ss_pred HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
+..+.+++++|+|||||| .++-.++..+... ..+++++-...++
T Consensus 124 v~~~~~ili~G~tGSGKT-T~l~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKT-TLLNALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHH-HHHHHHHHHCHTT--TSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccc-hHHHHHhhhcccc--ccceEEeccccce
Confidence 345789999999999999 4445566665554 2346666655554
No 391
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.75 E-value=0.86 Score=39.39 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=41.2
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC--CHHHHHHHHHHHHHhccccceeEEEEECCcccHH----HH
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TRELATQTEKVILAIGDFINIQAHACVGGKSVGE----DI 145 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 145 (219)
-++++|++|+|||....--+ ..+... +.+++++.- .+.-+. +.++.+....++.+....+..+... ..
T Consensus 102 vi~lvG~~GvGKTTtaaKLA-~~l~~~--G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l 175 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLA-YYYQRK--GFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKIASEGV 175 (429)
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHC--CCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHHHHHHH
Confidence 36799999999995543322 223322 224454443 233332 3333344444555554443333211 12
Q ss_pred HHhc-CCCe-EEEeChHHH
Q 027749 146 RKLE-HGVH-VVSGTPGRV 162 (219)
Q Consensus 146 ~~l~-~~~~-I~v~Tp~~l 162 (219)
.... .+++ |+|=||+++
T Consensus 176 ~~~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 176 EKFKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHHHhCCCCEEEEECCCCC
Confidence 2222 3455 667888765
No 392
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.72 E-value=0.14 Score=45.37 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=29.0
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
++=+.+|+||+---+|..-+..+...+..+.++.-+|..|
T Consensus 487 ~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 487 ADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 5667999999988777766777777777765555555544
No 393
>PRK13764 ATPase; Provisional
Probab=94.72 E-value=0.082 Score=47.45 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=21.0
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhcc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~ 97 (219)
.+++++++||||+||| .++..++..+..
T Consensus 256 ~~~~ILIsG~TGSGKT-Tll~AL~~~i~~ 283 (602)
T PRK13764 256 RAEGILIAGAPGAGKS-TFAQALAEFYAD 283 (602)
T ss_pred cCCEEEEECCCCCCHH-HHHHHHHHHHhh
Confidence 4678999999999999 444556665543
No 394
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=94.70 E-value=0.098 Score=47.71 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-CCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGD 126 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (219)
.+++-|.+++... ....+|.|+.|+|||.+..--+.+.+... -....++.++=|+..|.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4788899988766 56899999999999977766655555443 2234599999999999999999988865
No 395
>PHA02535 P terminase ATPase subunit; Provisional
Probab=94.69 E-value=0.59 Score=41.77 Aligned_cols=86 Identities=14% Similarity=0.065 Sum_probs=63.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 027749 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (219)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (219)
++......|.+.....+.++|+.-+..-...+.-++.-.--.|||+.|..-++...... +...+|+.|+...+....+
T Consensus 123 ~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~--G~nqiflSas~~QA~~f~~ 200 (581)
T PHA02535 123 ISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLT--GRNQIFLSASKAQAHVFKQ 200 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhc--CCceEEECCCHHHHHHHHH
Confidence 67777777776656788999999775522345566677788899998887666655543 3358999999999999888
Q ss_pred HHHHhccc
Q 027749 120 VILAIGDF 127 (219)
Q Consensus 120 ~~~~~~~~ 127 (219)
.+..+.+.
T Consensus 201 yi~~~a~~ 208 (581)
T PHA02535 201 YIIAFARE 208 (581)
T ss_pred HHHHHHHh
Confidence 88777554
No 396
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.67 E-value=0.074 Score=40.22 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=25.3
Q ss_pred hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHH
Q 027749 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q 116 (219)
.+++++++.|++|+|||..+.. +...+... +..++|+ ...+|+..
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~a-i~~~~~~~--g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVA-IANEAIRK--GYSVLFI-TASDLLDE 89 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHH-HHHHHHHT--T--EEEE-EHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHH-HHHHhccC--CcceeEe-ecCceecc
Confidence 4678999999999999954433 33444433 3335554 44445444
No 397
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.67 E-value=0.86 Score=37.75 Aligned_cols=51 Identities=10% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 160 GRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 160 ~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..+...+..... ....+++|+|++|.|.... .+.+.+.++..| +.-+|+++
T Consensus 110 r~i~~~l~~~p~-~~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~ 160 (314)
T PRK07399 110 REIKRFLSRPPL-EAPRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIA 160 (314)
T ss_pred HHHHHHHccCcc-cCCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEE
Confidence 334444433332 3578899999999987543 566777777766 55555554
No 398
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=94.66 E-value=0.067 Score=51.83 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=47.1
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccC--CCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRELATQTEKVILAIGD 126 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~--~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (219)
.+.+++|.|..|||||.+..--++..+... -.-..+++|+.|+.-+.++..++.+-..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~ 74 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLK 74 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHH
Confidence 567999999999999988777777777664 2446799999999999999998865543
No 399
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.65 E-value=0.38 Score=40.62 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHhH
Q 027749 71 RDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~ 88 (219)
+..+++||.|+|||....
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999995443
No 400
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.54 E-value=0.19 Score=41.55 Aligned_cols=59 Identities=22% Similarity=0.270 Sum_probs=36.8
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCChHHHHH-HHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhc
Q 027749 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQR-AVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~-~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~ 96 (219)
+.++..-+++...+ .+.|. +.+.|.. .|-.+..+++++++|+||+||| .++.+++..+-
T Consensus 109 IRk~~~~~~t~~~l---~~~gt--~~~~~~ayL~~~ie~~~siii~G~t~sGKT-t~lnall~~Ip 168 (312)
T COG0630 109 IRKFSDEPITPEDL---IEYGT--ISPEQAAYLWLAIEARKSIIICGGTASGKT-TLLNALLDFIP 168 (312)
T ss_pred EEcCCCCCCCHHHH---hhcCC--CCHHHHHHHHHHHHcCCcEEEECCCCCCHH-HHHHHHHHhCC
Confidence 34455545554433 33343 3444433 5556778899999999999999 55566665554
No 401
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.53 E-value=0.9 Score=35.69 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
|.-+++.|++|+|||.....-+...+. + +.+++|+.-.. -..++.+.+..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-~--g~~~~y~~~e~-~~~~~~~~~~~~ 75 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-Q--GKKVYVITTEN-TSKSYLKQMESV 75 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-C--CCEEEEEEcCC-CHHHHHHHHHHC
Confidence 456889999999999444333333333 2 34466666543 345555555554
No 402
>COG1485 Predicted ATPase [General function prediction only]
Probab=94.52 E-value=0.69 Score=38.63 Aligned_cols=107 Identities=11% Similarity=0.107 Sum_probs=60.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcC
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (219)
+.+-++|+.|.||| +++...........+ .-++...-...+.+++..+- |.
T Consensus 66 ~GlYl~GgVGrGKT--~LMD~Fy~~lp~~~k----~R~HFh~FM~~vH~~l~~l~-----------g~------------ 116 (367)
T COG1485 66 RGLYLWGGVGRGKT--MLMDLFYESLPGERK----RRLHFHRFMARVHQRLHTLQ-----------GQ------------ 116 (367)
T ss_pred ceEEEECCCCccHH--HHHHHHHhhCCcccc----ccccHHHHHHHHHHHHHHHc-----------CC------------
Confidence 46889999999999 444443333222121 22455667777777776553 11
Q ss_pred CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC-CCCCeEEEEeecccC
Q 027749 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVCCPGSCFLF 218 (219)
Q Consensus 151 ~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~-~~~~q~i~~SATl~~ 218 (219)
.+.+ +....++ ..+.++|++||.+. .|-+-...+.++++.+ ..++.++.-|-|-|.
T Consensus 117 -~dpl---~~iA~~~-------~~~~~vLCfDEF~V-tDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~ 173 (367)
T COG1485 117 -TDPL---PPIADEL-------AAETRVLCFDEFEV-TDIADAMILGRLLEALFARGVVLVATSNTAPD 173 (367)
T ss_pred -CCcc---HHHHHHH-------HhcCCEEEeeeeee-cChHHHHHHHHHHHHHHHCCcEEEEeCCCChH
Confidence 1111 1000111 34567899999874 4444445566666664 457777777777664
No 403
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=0.78 Score=37.68 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=29.4
Q ss_pred HHHhCCC-----cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHH
Q 027749 65 MPIIKGR-----DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (219)
Q Consensus 65 ~~~~~~~-----~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 120 (219)
|++..|+ .+++-+|.|+||+ |+.-... .... ...|-+.+..|+..+..+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVA---TEAn--STFFSvSSSDLvSKWmGE 209 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVA---TEAN--STFFSVSSSDLVSKWMGE 209 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHH---hhcC--CceEEeehHHHHHHHhcc
Confidence 5666664 5899999999999 4332211 1211 256666666666554443
No 404
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.49 E-value=0.66 Score=35.67 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=24.3
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~ 110 (219)
.|.-+.+.|++|+|||...+..+..... . +.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~-~--g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAAR-Q--GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-C--CCeEEEEECC
Confidence 3456889999999999555443333322 2 3346776654
No 405
>PRK05595 replicative DNA helicase; Provisional
Probab=94.48 E-value=0.24 Score=43.00 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=70.9
Q ss_pred ChHHHHHHHHHHhC----CCcEEEEcCCCCchhHHhHHHHHhhh-ccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 56 PSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTV-DTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 56 ~~~~Q~~~~~~~~~----~~~~lv~~~tG~GKT~~~~~~~~~~~-~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
|++++ .+..+.. |.-++|.|.+|.||| ++.+.+...+ ... +..++|+.. ..-..|+..++...... +
T Consensus 185 ~tg~~--~ld~~~~G~~~g~liviaarpg~GKT-~~al~ia~~~a~~~--g~~vl~fSl-Ems~~~l~~R~~a~~~~--v 256 (444)
T PRK05595 185 ASGFR--ELDAKTSGFQKGDMILIAARPSMGKT-TFALNIAEYAALRE--GKSVAIFSL-EMSKEQLAYKLLCSEAN--V 256 (444)
T ss_pred cCChH--HHHHhcCCCCCCcEEEEEecCCCChH-HHHHHHHHHHHHHc--CCcEEEEec-CCCHHHHHHHHHHHhcC--C
Confidence 45443 4444443 345778999999999 5545444433 232 233555544 33444555554332222 2
Q ss_pred eEEEEECCcccHHHHHHhc------CCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhccc----cHHH
Q 027749 131 QAHACVGGKSVGEDIRKLE------HGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQ 195 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~------~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~----~~~~ 195 (219)
....+..+.-...++..+. ....+.|- |++.+...++.-.. -..+++||||=.+.|.... ....
T Consensus 257 ~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~~~~~~~r~~~ 335 (444)
T PRK05595 257 DMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSGGKGSESRQQE 335 (444)
T ss_pred CHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccCCCCCccHHHH
Confidence 2111111211222222221 12234442 34444433332111 1358899999999876321 1233
Q ss_pred HHHHHHhCC-----CCCeEEEEee
Q 027749 196 IYDVYRYLP-----PDLQVCCPGS 214 (219)
Q Consensus 196 ~~~i~~~~~-----~~~q~i~~SA 214 (219)
+..+.+.++ .++.++++|.
T Consensus 336 v~~is~~LK~lAke~~i~vi~lsQ 359 (444)
T PRK05595 336 VSEISRSIKALAKEMECPVIALSQ 359 (444)
T ss_pred HHHHHHHHHHHHHHhCCeEEEeec
Confidence 444433332 2677887764
No 406
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.47 E-value=0.37 Score=42.55 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCchhHH
Q 027749 70 GRDVIAQAQSGTGKTSM 86 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~ 86 (219)
.+.+++.||+|+|||..
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999954
No 407
>PF14516 AAA_35: AAA-like domain
Probab=94.47 E-value=0.03 Score=46.71 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhC-CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEE
Q 027749 58 AIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (219)
Q Consensus 58 ~~Q~~~~~~~~~-~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (219)
|..++++..+.+ |..+.|.||-.+||| +.+..+++.+... +.+++++
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKT-Sll~~l~~~l~~~--~~~~v~i 65 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKT-SLLLRLLERLQQQ--GYRCVYI 65 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHH-HHHHHHHHHHHHC--CCEEEEE
Confidence 578889988887 889999999999999 5555566666554 3344444
No 408
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.44 E-value=0.12 Score=50.34 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=45.8
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (219)
-.++++|.|+.|||||....--++..+......-.+++++-|+.-+.++.+++.+...
T Consensus 9 p~~~~~~~a~agsgkt~~l~~~~~~~~~~~~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 9 PKTSAWVSANAGSGKTHVLTQRVIRLLLNGVPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHcCCCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 3568999999999999776666666555444445799999999999999999876654
No 409
>PRK10436 hypothetical protein; Provisional
Probab=94.42 E-value=0.14 Score=44.59 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=27.7
Q ss_pred HHHCCCCCChHHHHHHHHHHh--CCCcEEEEcCCCCchhHHhHHHHHhhhc
Q 027749 48 IYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (219)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~~tG~GKT~~~~~~~~~~~~ 96 (219)
|.+.|+ .+.|...+..+. .+.-++++||||||||... ..++..+.
T Consensus 197 L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 197 LETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred HHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 445553 344555555543 3456899999999999543 44555543
No 410
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.40 E-value=0.071 Score=46.52 Aligned_cols=50 Identities=20% Similarity=0.277 Sum_probs=37.8
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
.++++.||||+|||..+++|-+-. ... -+||.=|-.++.......+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~~~--s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---YPG--SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---ccC--CEEEEECCCcHHHHHHHHHHHCC
Confidence 479999999999999998886533 222 38888898888877666665553
No 411
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.40 E-value=0.27 Score=45.59 Aligned_cols=40 Identities=18% Similarity=0.247 Sum_probs=24.0
Q ss_pred cEEEeccchhhhcccc----HHHHHHHHHhCCCCCeEEEEeecc
Q 027749 177 KLLVLDESDEMLSRGF----KDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 177 ~~lVvDE~h~l~~~~~----~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
.+|++||+|.+...+- ...+..+++.+-...++.++.||=
T Consensus 280 ~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt 323 (758)
T PRK11034 280 SILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTT 323 (758)
T ss_pred CEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCC
Confidence 4899999999875431 234444555443344556666654
No 412
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.39 E-value=0.034 Score=47.32 Aligned_cols=47 Identities=21% Similarity=0.143 Sum_probs=34.7
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (219)
++++.||||+|||.++++|-+.... ..+||+=|..++........++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~-----~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWP-----GSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCC-----CCEEEEccchhHHHHHHHHHHH
Confidence 5789999999999988877655432 2388888888888665555444
No 413
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.29 Score=43.75 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=27.8
Q ss_pred CCccEEEeccchhhhcc---ccH----HHHHHHH---HhCCCCCeEEEEeecccCC
Q 027749 174 RAIKLLVLDESDEMLSR---GFK----DQIYDVY---RYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~---~~~----~~~~~i~---~~~~~~~q~i~~SATl~~~ 219 (219)
+.-+.|.|||+|.|.-. +-. ..+..++ +-+....+++.+.||=.||
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 34567999999988742 112 2222332 2234456789999987665
No 414
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.39 E-value=0.053 Score=42.45 Aligned_cols=14 Identities=21% Similarity=0.729 Sum_probs=11.8
Q ss_pred EEEEcCCCCchhHH
Q 027749 73 VIAQAQSGTGKTSM 86 (219)
Q Consensus 73 ~lv~~~tG~GKT~~ 86 (219)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999943
No 415
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.38 E-value=0.029 Score=42.14 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=28.7
Q ss_pred HHHHhcCCCeEEEeChHHHHHHHHcCC---CCCCCccEEEeccchhhhcc
Q 027749 144 DIRKLEHGVHVVSGTPGRVCDMIKRKT---LRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 144 ~~~~l~~~~~I~v~Tp~~l~~~l~~~~---~~~~~l~~lVvDE~h~l~~~ 190 (219)
..+.....++|+|++..-|++-..... +.. +-.+|||||||++.+.
T Consensus 112 ~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~-~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 112 LARELAKNADIVICNYNYLFDPSIRKSLFGIDL-KDNIVIFDEAHNLEDA 160 (174)
T ss_dssp HHHHCGGG-SEEEEETHHHHSHHHHHHHCT--C-CCEEEEETTGGGCGGG
T ss_pred HHHHhcccCCEEEeCHHHHhhHHHHhhhccccc-cCcEEEEecccchHHH
Confidence 334555678999999877765322211 223 3468999999998764
No 416
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.36 E-value=0.12 Score=41.48 Aligned_cols=50 Identities=12% Similarity=0.316 Sum_probs=33.8
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (219)
++.++++.||+|+|||..+.. +...+... +. -++.+++.+++.++.....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~~--g~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLKA--GI-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHHc--CC-eEEEEEHHHHHHHHHHHHh
Confidence 677999999999999944333 33444432 22 5566677888887777554
No 417
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.35 E-value=0.31 Score=40.62 Aligned_cols=40 Identities=8% Similarity=0.129 Sum_probs=28.6
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
....+++||||+|.|.... .+.+.+.++..|++..+|+.+
T Consensus 108 ~~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred ccCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEe
Confidence 3567899999999987543 556667777766666666654
No 418
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.35 E-value=0.35 Score=38.82 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=23.9
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
.|.-++|.|++|+|||...+--+.+.+.. +-+++|+.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 34568999999999995444433333332 334677663
No 419
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.33 E-value=0.5 Score=43.81 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.|.++.||+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999544
No 420
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=94.30 E-value=0.37 Score=43.35 Aligned_cols=75 Identities=8% Similarity=0.143 Sum_probs=55.9
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCC
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (219)
.+.++||.++++..++++++.+.+. ++.+..++|+.+..++...+ ....+|+|+|. .+ ..++++.+
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~-arGIDip~ 325 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VA-ARGLHIDG 325 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hh-hcCCCccC
Confidence 3457999999999999998888654 67888889887766554333 23679999993 33 46778888
Q ss_pred ccEEEeccc
Q 027749 176 IKLLVLDES 184 (219)
Q Consensus 176 l~~lVvDE~ 184 (219)
+++||.-+.
T Consensus 326 V~~VInyd~ 334 (572)
T PRK04537 326 VKYVYNYDL 334 (572)
T ss_pred CCEEEEcCC
Confidence 988876544
No 421
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.28 E-value=0.13 Score=47.29 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchhHHhH
Q 027749 71 RDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~ 88 (219)
.++++.||+|+|||....
T Consensus 53 ~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 53 GSLILYGPPGVGKTTLAR 70 (725)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999995443
No 422
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.26 E-value=1.4 Score=32.69 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.5
Q ss_pred EEEEcCCCCchhHHhHH
Q 027749 73 VIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~ 89 (219)
+++.|++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999955433
No 423
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=94.17 E-value=0.1 Score=48.92 Aligned_cols=72 Identities=19% Similarity=0.223 Sum_probs=56.0
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
+.-..+|-|.+++-.-.+-..+++.+|+|+|||....- ++..+......++++|++.+....+|.++.+.+.
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhcCCCcceEEEEecccchhHHHHHHHhc
Confidence 33456888988887766667999999999999955533 4555566666788999999999999988877554
No 424
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=94.17 E-value=0.24 Score=41.45 Aligned_cols=64 Identities=16% Similarity=0.192 Sum_probs=38.9
Q ss_pred HHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 44 LLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 44 ~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
-+..|.+.|. ..+.+...+.. +..+++++++|+||+||| .++-.++..+... .+.+++-.+.++
T Consensus 153 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKT-Tll~al~~~i~~~---~riv~iEd~~El 217 (340)
T TIGR03819 153 TLDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKT-TLLSALLALVAPD---ERIVLVEDAAEL 217 (340)
T ss_pred CHHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHH-HHHHHHHccCCCC---CcEEEECCccee
Confidence 3555666665 34455555554 446679999999999999 4444455444322 346666555555
No 425
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.16 E-value=0.065 Score=40.16 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=18.7
Q ss_pred CCccEEEeccchhhhc--cccHHHHHHHHH
Q 027749 174 RAIKLLVLDESDEMLS--RGFKDQIYDVYR 201 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~--~~~~~~~~~i~~ 201 (219)
..-+++|+||+=.|-. .+|...+..+++
T Consensus 94 ~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 94 SSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp HCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred CCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 4567999999987554 468888888887
No 426
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.15 Score=48.30 Aligned_cols=146 Identities=17% Similarity=0.146 Sum_probs=80.4
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCC-ChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEc
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEK-PSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~-~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (219)
....|++.+--..+++.|+++-+.. .+|-+ ..+. +..-+.+++++|.|+|||+..-..+..-.....+
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~--f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~k-------- 329 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEF--FDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRK-------- 329 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhH--hhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccc--------
Confidence 3457888888888888888775422 12211 1111 2234679999999999995543221111111000
Q ss_pred CCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhh
Q 027749 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~ 188 (219)
+..+. ++....-..-|+.+++=+.++.... .-.....+.+||+|=+.
T Consensus 330 ------------isffm--------------------rkgaD~lskwvgEaERqlrllFeeA-~k~qPSIIffdeIdGla 376 (1080)
T KOG0732|consen 330 ------------ISFFM--------------------RKGADCLSKWVGEAERQLRLLFEEA-QKTQPSIIFFDEIDGLA 376 (1080)
T ss_pred ------------cchhh--------------------hcCchhhccccCcHHHHHHHHHHHH-hccCceEEecccccccc
Confidence 00000 0000011234777776666554321 12345678899998221
Q ss_pred -------cc---ccHHHHHHHHHhCCCCCeEEEEeecccCC
Q 027749 189 -------SR---GFKDQIYDVYRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 189 -------~~---~~~~~~~~i~~~~~~~~q~i~~SATl~~~ 219 (219)
+. .-...+..++.-++...|+++++||-.+|
T Consensus 377 pvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRpd 417 (1080)
T KOG0732|consen 377 PVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRPD 417 (1080)
T ss_pred ccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCcc
Confidence 11 23455667777788899999999996653
No 427
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=94.02 E-value=0.23 Score=43.46 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=60.8
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc----CCCeEEEeChHHHHHHHHcCCCCCCC
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRA 175 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (219)
..|.+||.+++..-|+-+..-+.+. +++++.++|+++.+++-..+. +..+|+|||. . -.++++..+
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----v-AgRGIDIpn 585 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----V-AGRGIDIPN 585 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----c-cccCCCCCc
Confidence 3567999999998887766666554 799999999999887765552 3689999994 2 357788899
Q ss_pred ccEEE--------eccchhhhcc
Q 027749 176 IKLLV--------LDESDEMLSR 190 (219)
Q Consensus 176 l~~lV--------vDE~h~l~~~ 190 (219)
+.+|| .|-.|++...
T Consensus 586 VSlVinydmaksieDYtHRIGRT 608 (673)
T KOG0333|consen 586 VSLVINYDMAKSIEDYTHRIGRT 608 (673)
T ss_pred cceeeecchhhhHHHHHHHhccc
Confidence 88774 5667776643
No 428
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.97 E-value=0.18 Score=46.66 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCchhHH
Q 027749 70 GRDVIAQAQSGTGKTSM 86 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~ 86 (219)
.+.+++.||+|+|||..
T Consensus 487 ~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLL 503 (733)
T ss_pred CceEEEECCCCCCHHHH
Confidence 35699999999999943
No 429
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.86 E-value=0.95 Score=39.18 Aligned_cols=87 Identities=20% Similarity=0.235 Sum_probs=41.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH-HHHHHHHHHHHHhccccceeEEEEECCcccHHH----HH
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR-ELATQTEKVILAIGDFINIQAHACVGGKSVGED----IR 146 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 146 (219)
-++++|++|+|||....-.+.......+ ..-+++-+-+. ..+. +.+..+....++.+.......+...- ..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g-~kV~lV~~D~~R~~a~---~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQG-KKVLLVACDLYRPAAI---EQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCC-CeEEEEeccccchHHH---HHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 3789999999999665443333221222 22233444332 2222 22333333345554443322232111 11
Q ss_pred H-hcCCCe-EEEeChHHH
Q 027749 147 K-LEHGVH-VVSGTPGRV 162 (219)
Q Consensus 147 ~-l~~~~~-I~v~Tp~~l 162 (219)
. ..++++ |+|=||+++
T Consensus 177 ~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHhcCCCEEEEeCCCcc
Confidence 1 134565 778888754
No 430
>PRK09087 hypothetical protein; Validated
Probab=93.85 E-value=0.18 Score=39.63 Aligned_cols=38 Identities=5% Similarity=-0.048 Sum_probs=22.4
Q ss_pred cEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 177 KLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 177 ~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
++|++|++|.+. . -...+..+++.+......++++++.
T Consensus 89 ~~l~iDDi~~~~-~-~~~~lf~l~n~~~~~g~~ilits~~ 126 (226)
T PRK09087 89 GPVLIEDIDAGG-F-DETGLFHLINSVRQAGTSLLMTSRL 126 (226)
T ss_pred CeEEEECCCCCC-C-CHHHHHHHHHHHHhCCCeEEEECCC
Confidence 379999999753 2 2455666666654433345555543
No 431
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.82 E-value=0.13 Score=38.82 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=28.5
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCC-CCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~-~~q~i~~S 213 (219)
.+-+++++||...-++......+...+..+.+ +.++|+.|
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiS 155 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVIT 155 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEE
Confidence 45688999999988877666666666666533 36777765
No 432
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.76 E-value=0.65 Score=38.52 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=37.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhcc--CCCc-eeEEEEcCCHH-----------HHHHHHHHHHHhccccceeEEEEE
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDT--SSRE-VQALILSPTRE-----------LATQTEKVILAIGDFINIQAHACV 136 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~--~~~~-~~~lil~P~~~-----------l~~q~~~~~~~~~~~~~~~~~~~~ 136 (219)
|=+++.||+|+||| ...-++.+.+.- .... ...+|=..... |+.++++.++++...-+.-++.+.
T Consensus 178 RliLlhGPPGTGKT-SLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 178 RLILLHGPPGTGKT-SLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred eEEEEeCCCCCChh-HHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 44789999999999 444455555421 1111 22444444444 555666666666666555555554
No 433
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.75 E-value=0.076 Score=47.81 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=38.1
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
.++++.||||+|||..+++|-+..... -+||+=|-.++........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~-----S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWED-----SVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCC-----CEEEEeCcHHHHHHHHHHHHHC
Confidence 478999999999999998887765432 2888888888887666666554
No 434
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.72 E-value=0.22 Score=40.13 Aligned_cols=46 Identities=11% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHHCCCCCChHHHHHHHHHHhC--CCcEEEEcCCCCchhHHhHHHHHhhhc
Q 027749 47 GIYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVD 96 (219)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~--~~~~lv~~~tG~GKT~~~~~~~~~~~~ 96 (219)
.|.+.|+ .+.|.+.+..+.. +..+++.|+||+|||. .+..++..+.
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT-~l~all~~i~ 105 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTT-TLYSALSELN 105 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHH-HHHHHHhhhC
Confidence 3556654 4445556655442 3468999999999994 4444555543
No 435
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.65 E-value=0.18 Score=41.67 Aligned_cols=29 Identities=21% Similarity=0.481 Sum_probs=20.9
Q ss_pred HHhCCCcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 66 ~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
.+..+.++++.|+||+|||. ++-.++..+
T Consensus 140 ~v~~~~~ili~G~tGsGKTT-ll~al~~~~ 168 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTT-FLKSLVDEI 168 (308)
T ss_pred HhhCCCEEEEECCCCCCHHH-HHHHHHccC
Confidence 34577899999999999994 334444444
No 436
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.63 E-value=0.2 Score=44.12 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=21.9
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeE
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~ 209 (219)
..+.+..|+||+|++....|.. +.+.++.-|.+.-+
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNA-LLKTLEEPP~hV~F 152 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNA-LLKTLEEPPSHVKF 152 (515)
T ss_pred cccceEEEEecHHhhhHHHHHH-HhcccccCccCeEE
Confidence 4678899999999877554433 33333444444333
No 437
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.57 E-value=0.36 Score=46.83 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=60.0
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
+.+++|++|+.+-+..+.+.+.+... +.++..++|+.+..++...+ .+..+|+||| .++ .+++++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIi-erGIDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TII-ETGIDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chh-hcccccccC
Confidence 34699999999999988888887654 35777788888776543332 2478999999 333 467899999
Q ss_pred cEEEeccchh
Q 027749 177 KLLVLDESDE 186 (219)
Q Consensus 177 ~~lVvDE~h~ 186 (219)
++||++.+|+
T Consensus 881 ~~VIi~~ad~ 890 (1147)
T PRK10689 881 NTIIIERADH 890 (1147)
T ss_pred CEEEEecCCC
Confidence 9999999986
No 438
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=93.54 E-value=0.46 Score=41.00 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=71.5
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcC-
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH- 150 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~- 150 (219)
=+++.|.+|-||| ++.+.++..+......+-++|- ...-+.|+..++-. ...++....+..+.-.+++|..+..
T Consensus 198 Lii~AaRP~mGKT-afalnia~n~a~~~~~~v~iFS--LEM~~eql~~R~Ls--~~s~v~~~kirtg~l~~~d~~~l~~a 272 (435)
T COG0305 198 LIIVAARPGMGKT-ALALNIALNAAADGRKPVAIFS--LEMSEEQLVMRLLS--SESGIESSKLRTGRLSDDEWERLIKA 272 (435)
T ss_pred EEEEccCCCCChH-HHHHHHHHHHHHhcCCCeEEEE--ccCCHHHHHHHhhc--cccccchhccccccccHHHHHHHHHH
Confidence 3667788999999 6666666666555445534443 34445566655532 2334444444444444444444321
Q ss_pred -----CCeEEE-eChHHHHHHHHcC--C-CCCCCccEEEeccchhhhccc----cHHHHHHHHHhCC-----CCCeEEEE
Q 027749 151 -----GVHVVS-GTPGRVCDMIKRK--T-LRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP-----PDLQVCCP 212 (219)
Q Consensus 151 -----~~~I~v-~Tp~~l~~~l~~~--~-~~~~~l~~lVvDE~h~l~~~~----~~~~~~~i~~~~~-----~~~q~i~~ 212 (219)
...|.| -||+.=..-++.+ . -.-..++++++|-.+.|...+ ....+..+-+.+. -+++++.+
T Consensus 273 ~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~~~~~r~qevs~iSr~LK~lAkEl~vpvial 352 (435)
T COG0305 273 ASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGKKSENRKQEVSEISRSLKGLAKELGVPVIAL 352 (435)
T ss_pred HHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecccccchhHHHHHHHHHHHHHHHHHhcCCcEEeh
Confidence 233444 3443222212111 1 111339999999999877654 3333444433332 15677776
Q ss_pred ee
Q 027749 213 GS 214 (219)
Q Consensus 213 SA 214 (219)
|.
T Consensus 353 SQ 354 (435)
T COG0305 353 SQ 354 (435)
T ss_pred hh
Confidence 63
No 439
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.52 E-value=0.63 Score=39.40 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=27.5
Q ss_pred HHHHHHHHHHh---CCCcEEEEcCCCCchhHHhHHHHHhhhccC
Q 027749 58 AIQQRAVMPII---KGRDVIAQAQSGTGKTSMIALTVCQTVDTS 98 (219)
Q Consensus 58 ~~Q~~~~~~~~---~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~ 98 (219)
+.-.++++.+. .|...+|.|+.|+|||.. +..+++.+..+
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTL-l~~la~~i~~~ 160 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVL-LQQIAAAVAAN 160 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHH-HHHHHHHHHhc
Confidence 44456777655 778999999999999944 33345555443
No 440
>PRK13695 putative NTPase; Provisional
Probab=93.50 E-value=1.8 Score=32.21 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=16.4
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhc
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVD 96 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~ 96 (219)
.+.+.++.|+|||..... +...+.
T Consensus 2 ~i~ltG~~G~GKTTll~~-i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK-IAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHH
Confidence 478999999999955443 334333
No 441
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.48 E-value=0.36 Score=45.83 Aligned_cols=79 Identities=10% Similarity=0.120 Sum_probs=61.1
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
+.+++|++|+.+-+..+++.+++... ++++..++|+.+..+....+ .+..+|+|+|. ++ ..++++.++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~p--~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----ii-e~GIDIp~v 731 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELVP--EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----II-ETGIDIPNA 731 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcccccccC
Confidence 35699999999999998888887643 57888889988766554332 34689999994 33 467899999
Q ss_pred cEEEeccchhh
Q 027749 177 KLLVLDESDEM 187 (219)
Q Consensus 177 ~~lVvDE~h~l 187 (219)
++||++.+++.
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999763
No 442
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.47 E-value=0.44 Score=34.15 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=15.6
Q ss_pred HhCCCcEEEEcCCCCchhHH
Q 027749 67 IIKGRDVIAQAQSGTGKTSM 86 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~ 86 (219)
...+.++++.|+.|+||+.+
T Consensus 18 a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHH
Confidence 34567899999999999943
No 443
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.47 E-value=0.62 Score=41.18 Aligned_cols=99 Identities=17% Similarity=0.167 Sum_probs=72.3
Q ss_pred cCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHH---hc-CCC
Q 027749 77 AQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---LE-HGV 152 (219)
Q Consensus 77 ~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~ 152 (219)
.-.++|++..-++++.+.+... -.|.++|-+-+.+-|.|++..+. ...++++..++|..+..++-.. .+ ...
T Consensus 364 elvF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 364 ELVFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGKI 439 (593)
T ss_pred hheeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccCe
Confidence 3457888877777766666554 45668999999999999999886 3446788888888665544322 22 356
Q ss_pred eEEEeChHHHHHHHHcCCCCCCCccEEEeccch
Q 027749 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (219)
Q Consensus 153 ~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h 185 (219)
.++||| +++. +++++.++.+||-++.-
T Consensus 440 wvLicT-----dll~-RGiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 440 WVLICT-----DLLA-RGIDFKGVNLVINYDFP 466 (593)
T ss_pred eEEEeh-----hhhh-ccccccCcceEEecCCC
Confidence 899999 5554 55899999999998864
No 444
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.45 E-value=0.092 Score=42.53 Aligned_cols=28 Identities=39% Similarity=0.593 Sum_probs=20.2
Q ss_pred HhCCCcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
+.++++++++||+|+|||... -..+..+
T Consensus 30 ~~~~~pvLl~G~~GtGKT~li-~~~l~~l 57 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSLI-QNFLSSL 57 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHHH-HHHHHCS
T ss_pred HHcCCcEEEECCCCCchhHHH-HhhhccC
Confidence 457789999999999999433 3344443
No 445
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.40 E-value=0.094 Score=42.18 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=20.4
Q ss_pred HHHHHhCCCcEEEEcCCCCchhHHhH
Q 027749 63 AVMPIIKGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 63 ~~~~~~~~~~~lv~~~tG~GKT~~~~ 88 (219)
+...+..++++++.||+|+|||..+.
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 44455678999999999999995543
No 446
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.36 E-value=0.23 Score=43.72 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=28.5
Q ss_pred HHHHCCCCCChHHHHHHHHHHhCC-C-cEEEEcCCCCchhHHhHHHHHhhhc
Q 027749 47 GIYQYGFEKPSAIQQRAVMPIIKG-R-DVIAQAQSGTGKTSMIALTVCQTVD 96 (219)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~-~-~~lv~~~tG~GKT~~~~~~~~~~~~ 96 (219)
.|.+.|+ .+.|...+..+... + -++++||||+|||.. +..++..+.
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~ 267 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLN 267 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccC
Confidence 3445554 45566666655543 3 478999999999944 344555554
No 447
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.35 E-value=0.56 Score=41.60 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=54.3
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc----CCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
..++||.+.|...++.+...+... ++.+..++|+.+..++...+. ...+|+|+|- .. .+++++.++
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD-----va-aRGiDi~~v 342 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATD-----VA-ARGLDIPDV 342 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec-----hh-hccCCcccc
Confidence 346999999999999988777665 588999999999877655542 4789999993 32 466777777
Q ss_pred cEEEe
Q 027749 177 KLLVL 181 (219)
Q Consensus 177 ~~lVv 181 (219)
.+||=
T Consensus 343 ~~Vin 347 (513)
T COG0513 343 SHVIN 347 (513)
T ss_pred ceeEE
Confidence 76653
No 448
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.35 E-value=0.91 Score=37.46 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=26.5
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
...-+++|||++|.|.... .+.+.+.++..|++.-+|+.+
T Consensus 91 ~~~~kv~iI~~ad~m~~~a-~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQA-QNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCCceEEEEechhhcCHHH-HHHHHHHhcCCCCCeEEEEEe
Confidence 3567899999999887543 455666666655555555444
No 449
>PHA00350 putative assembly protein
Probab=93.34 E-value=1 Score=38.47 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=13.9
Q ss_pred EEEEcCCCCchhHHhHH
Q 027749 73 VIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~ 89 (219)
.++.|..|+|||+..+-
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 47899999999976654
No 450
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.29 E-value=0.55 Score=40.43 Aligned_cols=73 Identities=14% Similarity=0.148 Sum_probs=53.6
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
..++||.++++..+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. . ..+++++.++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v-~~rGiDip~v 324 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----V-AARGLHIPAV 324 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----h-hhcCCCcccc
Confidence 457999999999998888877643 67888888887765554333 24689999994 2 2467888888
Q ss_pred cEEEecc
Q 027749 177 KLLVLDE 183 (219)
Q Consensus 177 ~~lVvDE 183 (219)
++||.-+
T Consensus 325 ~~VI~~d 331 (423)
T PRK04837 325 THVFNYD 331 (423)
T ss_pred CEEEEeC
Confidence 8776544
No 451
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=93.29 E-value=0.57 Score=40.47 Aligned_cols=79 Identities=10% Similarity=0.112 Sum_probs=55.6
Q ss_pred hhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc----CCCeEEEeChHHHHHHHHc
Q 027749 93 QTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKR 168 (219)
Q Consensus 93 ~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~I~v~Tp~~l~~~l~~ 168 (219)
..+.......++||.+++++-+..+.+.+.+. ++.+..+.|+.+..++...+. ...+|+|+|. . ..
T Consensus 237 ~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----~-~~ 306 (434)
T PRK11192 237 CHLLKQPEVTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----V-AA 306 (434)
T ss_pred HHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----c-cc
Confidence 33333334567999999999999998888763 678888888877666544332 3678999993 2 24
Q ss_pred CCCCCCCccEEEe
Q 027749 169 KTLRTRAIKLLVL 181 (219)
Q Consensus 169 ~~~~~~~l~~lVv 181 (219)
.++++.++.+||.
T Consensus 307 ~GiDip~v~~VI~ 319 (434)
T PRK11192 307 RGIDIDDVSHVIN 319 (434)
T ss_pred cCccCCCCCEEEE
Confidence 5677888887763
No 452
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.23 E-value=1.4 Score=38.46 Aligned_cols=91 Identities=16% Similarity=0.243 Sum_probs=50.5
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (219)
|.-+++.|++|+|||...+. ++..+... +.+++|+..- +-..|+......+... .....+..
T Consensus 94 GsvilI~G~pGsGKTTL~lq-~a~~~a~~--g~kvlYvs~E-Es~~qi~~ra~rlg~~--~~~l~~~~------------ 155 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQ-VACQLAKN--QMKVLYVSGE-ESLQQIKMRAIRLGLP--EPNLYVLS------------ 155 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHH-HHHHHHhc--CCcEEEEECc-CCHHHHHHHHHHcCCC--hHHeEEcC------------
Confidence 45689999999999954443 33333332 2358888754 4456666555544211 00000000
Q ss_pred CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 150 ~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
. .+.+.+...+.. .+.++||||....+..
T Consensus 156 -e-----~~~~~I~~~i~~-----~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 156 -E-----TNWEQICANIEE-----ENPQACVIDSIQTLYS 184 (454)
T ss_pred -C-----CCHHHHHHHHHh-----cCCcEEEEecchhhcc
Confidence 0 134555555443 2467899999987653
No 453
>PHA00729 NTP-binding motif containing protein
Probab=93.21 E-value=0.2 Score=39.35 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
++++.|++|+|||..+
T Consensus 19 nIlItG~pGvGKT~LA 34 (226)
T PHA00729 19 SAVIFGKQGSGKTTYA 34 (226)
T ss_pred EEEEECCCCCCHHHHH
Confidence 7999999999999433
No 454
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=93.20 E-value=1.1 Score=41.33 Aligned_cols=94 Identities=13% Similarity=0.033 Sum_probs=55.2
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccc---------ceeEEEEECCc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI---------NIQAHACVGGK 139 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~---------~~~~~~~~~~~ 139 (219)
+|-..|+...+|-|||+-. +..+..+........+|+++|-..| +.+..++..|.... .+.+..+..+.
T Consensus 281 sGFGCILAHSMGLGKTlQV-isF~diflRhT~AKtVL~ivPiNTl-QNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~ 358 (1387)
T KOG1016|consen 281 SGFGCILAHSMGLGKTLQV-ISFSDIFLRHTKAKTVLVIVPINTL-QNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGV 358 (1387)
T ss_pred CCcceeeeeccccCceeEE-eehhHHHhhcCccceEEEEEehHHH-HHHHHHhhhhcCCCcccCCCccceeEEEEecCch
Confidence 3446888899999999443 2334444443344569999997776 45777777665442 25666666655
Q ss_pred ccHHHHHHh----cCCCeEEEeChHHHHH
Q 027749 140 SVGEDIRKL----EHGVHVVSGTPGRVCD 164 (219)
Q Consensus 140 ~~~~~~~~l----~~~~~I~v~Tp~~l~~ 164 (219)
+...+..++ -....|+..-.+.+.-
T Consensus 359 KT~~~Rakvi~~Wv~~GGVlLvGYemfRL 387 (1387)
T KOG1016|consen 359 KTFDQRAKVIEQWVQTGGVLLVGYEMFRL 387 (1387)
T ss_pred hhHHHHHHHHHHHhccCCEEEehHHHHHH
Confidence 544333222 2234455555665543
No 455
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=93.19 E-value=0.61 Score=40.66 Aligned_cols=74 Identities=23% Similarity=0.255 Sum_probs=53.1
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh---c-CCCeEEEeChHHHHHHHHcCCCCCCC
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRA 175 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (219)
...++||.++++.-++.+.+.+.+. ++.+..++|+.+..++...+ . ...+|+|+|. .+ ..++++.+
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~-~rGiDip~ 313 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IA-ARGLDIEE 313 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HH-hcCCCccc
Confidence 3456999999999999888877653 67788888888765554333 2 3678999993 33 36678888
Q ss_pred ccEEEecc
Q 027749 176 IKLLVLDE 183 (219)
Q Consensus 176 l~~lVvDE 183 (219)
+++||.=+
T Consensus 314 v~~VI~~~ 321 (456)
T PRK10590 314 LPHVVNYE 321 (456)
T ss_pred CCEEEEeC
Confidence 88776433
No 456
>PHA02542 41 41 helicase; Provisional
Probab=93.15 E-value=0.43 Score=41.86 Aligned_cols=40 Identities=13% Similarity=0.058 Sum_probs=24.7
Q ss_pred CccEEEeccchhhhcc-------ccHHHHHHHHHhCCC-----CCeEEEEee
Q 027749 175 AIKLLVLDESDEMLSR-------GFKDQIYDVYRYLPP-----DLQVCCPGS 214 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~-------~~~~~~~~i~~~~~~-----~~q~i~~SA 214 (219)
.+++||||-.+.|... +....+..|.+.++. ++.++++|.
T Consensus 301 ~~dlVvIDYLqL~~~~~~~~~~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQ 352 (473)
T PHA02542 301 KPDVIIVDYLGICASSRLRVSSENSYTYVKAIAEELRGLAVEHDVVVWTAAQ 352 (473)
T ss_pred CCCEEEEechhhccCCcccCCCCChHHHHHHHHHHHHHHHHHhCCeEEEEEe
Confidence 3789999999887522 223334444444322 677888875
No 457
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.10 E-value=0.17 Score=40.20 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=23.6
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
+++|.|++||||| .++..++..+...- ..+++++|
T Consensus 15 r~viIG~sGSGKT-~li~~lL~~~~~~f--~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKT-TLIKSLLYYLRHKF--DHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHH-HHHHHHHHhhcccC--CEEEEEec
Confidence 6899999999999 66666666544332 33455555
No 458
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=93.08 E-value=0.76 Score=37.05 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=16.5
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhh
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQT 94 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~ 94 (219)
+-+.|+|..|.|||..+.- +++.
T Consensus 20 ~~v~I~G~~G~GKT~LA~~-~~~~ 42 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQ-VARD 42 (287)
T ss_dssp EEEEEEESTTSSHHHHHHH-HHCH
T ss_pred EEEEEEcCCcCCcceeeee-cccc
Confidence 3578999999999955544 3344
No 459
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=93.04 E-value=0.48 Score=44.25 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999443
No 460
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.01 E-value=1.4 Score=33.62 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=30.6
Q ss_pred CCCccEEEeccchhhhcccc--HHHHHHHHHhCCCCCeEEEEe
Q 027749 173 TRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~--~~~~~~i~~~~~~~~q~i~~S 213 (219)
-..+++||+||+-..++.++ .+.+..+++.-|.+.-+|+-.
T Consensus 113 ~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTG 155 (191)
T PRK05986 113 DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITG 155 (191)
T ss_pred CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEEC
Confidence 35789999999998888764 466888888877665555543
No 461
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.95 E-value=1.9 Score=38.03 Aligned_cols=52 Identities=19% Similarity=0.296 Sum_probs=34.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
|.-++|.+|+|+|||...+.-+...+ .+ +-+++|+. ..+-..|+...++.++
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~-~~--ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENAC-AN--KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HC--CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 45689999999999954444333332 22 33577776 5667778888877664
No 462
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.90 E-value=1.7 Score=34.22 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=30.1
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhc---------cCCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVD---------TSSREVQALILSPTRELATQTEKVILAIGD 126 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~---------~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (219)
-.++.||.|+|||...+-.++.... ....+.+++|+.--. -..++.+++..+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed-~~~~i~~Rl~~i~~ 65 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED-PREEIHRRLEAILQ 65 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC-CHHHHHHHHHHHHh
Confidence 3689999999999655544443221 112344677777322 22344555555543
No 463
>PRK06749 replicative DNA helicase; Provisional
Probab=92.87 E-value=0.97 Score=39.14 Aligned_cols=49 Identities=27% Similarity=0.218 Sum_probs=27.9
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (219)
.|.-++|-|.+|.||| ++.+-+...+... +..++|... ..-..|+..++
T Consensus 185 ~G~LiiIaarPgmGKT-afal~ia~~~a~~--g~~v~~fSl-EMs~~ql~~R~ 233 (428)
T PRK06749 185 EGDFVVLGARPSMGKT-AFALNVGLHAAKS--GAAVGLFSL-EMSSKQLLKRM 233 (428)
T ss_pred CCcEEEEEeCCCCCch-HHHHHHHHHHHhc--CCCEEEEEe-eCCHHHHHHHH
Confidence 3445788899999999 5555555554433 223444433 33344555544
No 464
>PF13479 AAA_24: AAA domain
Probab=92.86 E-value=0.19 Score=39.12 Aligned_cols=35 Identities=6% Similarity=-0.003 Sum_probs=21.6
Q ss_pred eEEEeChHHHHHHHHcCCCCCCCccEEEeccchhh
Q 027749 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (219)
Q Consensus 153 ~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l 187 (219)
.|-|.+++.+.+.+..-.-....++.||||-++.+
T Consensus 46 ~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 46 VIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred eeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 34455777777765432122567888888877754
No 465
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.86 E-value=1.1 Score=34.82 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=31.3
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
|..+++.|++|+|||...+--+...+.. +-+++|+.-. +-..++.+.+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC-CCHHHHHHHHHHc
Confidence 4578999999999994433333333332 3346776554 4566666666555
No 466
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.80 E-value=0.15 Score=44.33 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=88.4
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 027749 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (219)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (219)
..+++.+++ .+-.+...|.++.-..-.|+. .+.|-.|||||...+. -...+...++.-+++|.+-|+.|+.++...+
T Consensus 150 ~a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~-Kaa~lh~knPd~~I~~Tfftk~L~s~~r~lv 226 (660)
T COG3972 150 NALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAH-KAAELHSKNPDSRIAFTFFTKILASTMRTLV 226 (660)
T ss_pred HHHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHH-HHHHHhcCCCCceEEEEeehHHHHHHHHHHH
Confidence 345566654 355677788887655556665 6789999999944433 3445666667778999999999999999888
Q ss_pred HHhcccc--------ceeEEEEECCcccHHH---HHHhcCCCeEEEeC----hHHHHH-HHHcCCCCCCCccEEEeccch
Q 027749 122 LAIGDFI--------NIQAHACVGGKSVGED---IRKLEHGVHVVSGT----PGRVCD-MIKRKTLRTRAIKLLVLDESD 185 (219)
Q Consensus 122 ~~~~~~~--------~~~~~~~~~~~~~~~~---~~~l~~~~~I~v~T----p~~l~~-~l~~~~~~~~~l~~lVvDE~h 185 (219)
.+++-.. ..-++.-.||.+...- .+...+-..+=++- -....+ ++. ..-+.+-+++|.+||..
T Consensus 227 ~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~-~~~~~~~yD~ilIDE~Q 305 (660)
T COG3972 227 PEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIA-DINNKKAYDYILIDESQ 305 (660)
T ss_pred HHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHH-hhhccccccEEEecccc
Confidence 7775211 1233333455554321 11111101111110 111111 221 11125668999999998
Q ss_pred hhhccccHHHHHHHHH
Q 027749 186 EMLSRGFKDQIYDVYR 201 (219)
Q Consensus 186 ~l~~~~~~~~~~~i~~ 201 (219)
.+- .+|.+.+..+.+
T Consensus 306 DFP-~~F~~Lcf~~tk 320 (660)
T COG3972 306 DFP-QSFIDLCFMVTK 320 (660)
T ss_pred cCC-HHHHHHHHHHhc
Confidence 643 345555555544
No 467
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.74 E-value=3 Score=34.17 Aligned_cols=41 Identities=15% Similarity=0.182 Sum_probs=30.2
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeec
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSC 215 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SAT 215 (219)
...+++|+|++|.|.... ...+.++++.-|++.-+|++|..
T Consensus 94 ~~~kv~ii~~ad~mt~~A-aNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDA-ISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhhcCCCCeEEEEEeCC
Confidence 567899999999988543 67777777886666666666543
No 468
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=92.72 E-value=0.14 Score=46.71 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=34.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (219)
.++++.||||+|||..+++|-+-.+.. .+||+=|-.++........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~g-----S~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKG-----SVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCC-----CEEEEeCCchHHHHHHHHHHh
Confidence 489999999999999998887655322 377777777776654444443
No 469
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.67 E-value=0.084 Score=43.43 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchhHHhH
Q 027749 71 RDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~ 88 (219)
-|+++.||||||||+.+.
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 379999999999996553
No 470
>PRK07773 replicative DNA helicase; Validated
Probab=92.66 E-value=0.44 Score=45.17 Aligned_cols=138 Identities=19% Similarity=0.198 Sum_probs=66.0
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc-
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE- 149 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 149 (219)
.-++|.|++|.||| ++.+.++..+..... ..++|.. .-.-..|+..++..........-. -.|..+ ..++..+.
T Consensus 218 ~livIagrPg~GKT-~fal~ia~~~a~~~~-~~V~~fS-lEms~~ql~~R~~s~~~~i~~~~i-~~g~l~-~~~~~~~~~ 292 (886)
T PRK07773 218 QLIIVAARPSMGKT-TFGLDFARNCAIRHR-LAVAIFS-LEMSKEQLVMRLLSAEAKIKLSDM-RSGRMS-DDDWTRLAR 292 (886)
T ss_pred cEEEEEeCCCCCcH-HHHHHHHHHHHHhcC-CeEEEEe-cCCCHHHHHHHHHHHhcCCCHHHH-hcCCCC-HHHHHHHHH
Confidence 44788999999999 444544444432222 2244443 344455666555433222211111 012222 12222211
Q ss_pred -----CCCeEEE-----eChHHHHHHHHcCCCCCCCccEEEeccchhhhcc----ccHHHHHHHHHhCC-----CCCeEE
Q 027749 150 -----HGVHVVS-----GTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQIYDVYRYLP-----PDLQVC 210 (219)
Q Consensus 150 -----~~~~I~v-----~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~----~~~~~~~~i~~~~~-----~~~q~i 210 (219)
.+..+.| .|++.+...+..-.- -..+++||||-.+.|... +....+..+.+.++ -++.+|
T Consensus 293 a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~-~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi 371 (886)
T PRK07773 293 AMGEISEAPIFIDDTPNLTVMEIRAKARRLRQ-EANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVV 371 (886)
T ss_pred HHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 2334555 245555443221110 135889999999977532 12233444444442 266777
Q ss_pred EEee
Q 027749 211 CPGS 214 (219)
Q Consensus 211 ~~SA 214 (219)
++|.
T Consensus 372 ~lsQ 375 (886)
T PRK07773 372 ALSQ 375 (886)
T ss_pred Eecc
Confidence 7764
No 471
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=1.9 Score=39.51 Aligned_cols=63 Identities=25% Similarity=0.335 Sum_probs=42.8
Q ss_pred EECCcccHHHHHHhcCCCeEEEe-ChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSG-TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~-Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
..||...+.+++..++. .|+ -|+++...+...+. .=-++.+||+|.|.+...++.-..+++.+
T Consensus 382 sLGGvrDEAEIRGHRRT---YIGamPGrIiQ~mkka~~---~NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 382 SLGGVRDEAEIRGHRRT---YIGAMPGKIIQGMKKAGV---KNPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred ecCccccHHHhcccccc---ccccCChHHHHHHHHhCC---cCCeEEeechhhccCCCCCChHHHHHhhc
Confidence 35777777776666553 344 49999988776432 12369999999999876556666666665
No 472
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.57 E-value=3.5 Score=33.41 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=17.2
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
+++++.+|+|+||| .++-.+...+
T Consensus 112 ~~~~i~g~~g~GKt-tl~~~l~~~~ 135 (270)
T TIGR02858 112 LNTLIISPPQCGKT-TLLRDLARIL 135 (270)
T ss_pred eEEEEEcCCCCCHH-HHHHHHhCcc
Confidence 58999999999999 3333344443
No 473
>PF12846 AAA_10: AAA-like domain
Probab=92.57 E-value=0.27 Score=39.75 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=25.7
Q ss_pred CccEEEeccchhhhcc-ccHHHHHHHHHhCCC-CCeEEEEeec
Q 027749 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYLPP-DLQVCCPGSC 215 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~-~~q~i~~SAT 215 (219)
.-.++++||+|.+... .....+..+++..++ ..-+++.|.+
T Consensus 220 ~~~~i~iDEa~~~~~~~~~~~~~~~~~~~~Rk~g~~~~l~tQ~ 262 (304)
T PF12846_consen 220 RPKIIVIDEAHNFLSNPSGAEFLDELLREGRKYGVGLILATQS 262 (304)
T ss_pred ceEEEEeCCccccccccchhhhhhHHHHHHHhcCCEEEEeeCC
Confidence 3457899999998876 344556666666544 4445555544
No 474
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.52 E-value=0.35 Score=43.42 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=28.9
Q ss_pred HHHHCCCCCChHHHHHHHHHHhC--CCcEEEEcCCCCchhHHhHHHHHhhhc
Q 027749 47 GIYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVD 96 (219)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~--~~~~lv~~~tG~GKT~~~~~~~~~~~~ 96 (219)
.|.+.|+ .+.|...+..+.. +..++++||||||||... ..++..+.
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 3555664 3445556655443 346889999999999543 44555553
No 475
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.50 E-value=1.4 Score=41.70 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.+.++.||+|+|||...
T Consensus 195 ~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CceEEEcCCCCCHHHHH
Confidence 58999999999999444
No 476
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.46 E-value=0.94 Score=42.75 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.|.++.||.|+|||...
T Consensus 209 ~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV 225 (852)
T ss_pred CceeEECCCCCCHHHHH
Confidence 58999999999999444
No 477
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.46 E-value=0.25 Score=37.96 Aligned_cols=36 Identities=14% Similarity=0.339 Sum_probs=21.3
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
-++++||||+|||... ..++..+.... +.+++.+-.
T Consensus 3 lilI~GptGSGKTTll-~~ll~~~~~~~-~~~i~t~e~ 38 (198)
T cd01131 3 LVLVTGPTGSGKSTTL-AAMIDYINKNK-THHILTIED 38 (198)
T ss_pred EEEEECCCCCCHHHHH-HHHHHHhhhcC-CcEEEEEcC
Confidence 3689999999999543 44455443322 223444443
No 478
>TIGR02773 addB_Gpos ATP-dependent nuclease subunit B. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function.
Probab=92.35 E-value=0.93 Score=44.33 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=31.5
Q ss_pred EEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHH
Q 027749 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (219)
Q Consensus 74 lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 114 (219)
+|.|+.|||||...+--+.+.+...+.++..|+++|.+...
T Consensus 5 fi~G~aGSGKT~~l~~ri~~~l~~~~~~~~~illVPeq~TF 45 (1158)
T TIGR02773 5 FIYGRAGTGKSTFCIDEIKQKIKENPLGKPIILIVPDQMTF 45 (1158)
T ss_pred EEEeCCCCChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccH
Confidence 68899999999666556666665655678899999988644
No 479
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.34 E-value=0.25 Score=41.46 Aligned_cols=42 Identities=10% Similarity=0.230 Sum_probs=25.2
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 112 (219)
.+..++++||||+|||.. +..++..+... .+.+++.+-...+
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~~-~~~~i~tiEdp~E 162 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINKN-AAGHIITIEDPIE 162 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCcC-CCCEEEEEcCChh
Confidence 456899999999999944 34455544332 1234555544333
No 480
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.32 E-value=0.56 Score=38.07 Aligned_cols=40 Identities=23% Similarity=0.161 Sum_probs=29.8
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+=+++++||.-.-++......+..++.....++.+|+.|
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~is 194 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSE 194 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 4457899999988788777777888887765556666655
No 481
>CHL00176 ftsH cell division protein; Validated
Probab=92.32 E-value=0.8 Score=41.73 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
.+.+++.||+|+|||...
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357999999999999443
No 482
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=92.31 E-value=0.22 Score=38.96 Aligned_cols=43 Identities=19% Similarity=0.406 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 114 (219)
++++.|.|.||+|||... -.+++.+.. ..+..++|+=|..+=+
T Consensus 23 ~~H~~I~G~TGsGKS~~~-~~ll~~l~~-~~~~~~ii~D~~GEY~ 65 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTV-KVLLEELLK-KKGAKVIIFDPHGEYA 65 (229)
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHh-cCCCCEEEEcCCCcch
Confidence 478999999999999444 445555552 2233477776665443
No 483
>PTZ00110 helicase; Provisional
Probab=92.30 E-value=1.3 Score=39.60 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=53.9
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh---c-CCCeEEEeChHHHHHHHHcCCCCCCC
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRA 175 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (219)
.+.++||.|+++..++.+...+... ++.+..++|+.+..++...+ . ....|+|+|. . ..+++++.+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v-~~rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----V-ASRGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----h-hhcCCCccc
Confidence 3567999999999999888887643 56777888887766554332 2 3578999993 2 256788888
Q ss_pred ccEEEecc
Q 027749 176 IKLLVLDE 183 (219)
Q Consensus 176 l~~lVvDE 183 (219)
+++||.=+
T Consensus 446 v~~VI~~d 453 (545)
T PTZ00110 446 VKYVINFD 453 (545)
T ss_pred CCEEEEeC
Confidence 98877543
No 484
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.28 E-value=2.3 Score=35.35 Aligned_cols=107 Identities=19% Similarity=0.356 Sum_probs=54.2
Q ss_pred EEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC--HHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcC
Q 027749 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT--RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~--~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (219)
++++|..|+|||....= +.+.+..+ +.++++.+-- |+-|. +.++.|.+..++.++..-.|..
T Consensus 142 il~vGVNG~GKTTTIaK-LA~~l~~~--g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~D---------- 205 (340)
T COG0552 142 ILFVGVNGVGKTTTIAK-LAKYLKQQ--GKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGAD---------- 205 (340)
T ss_pred EEEEecCCCchHhHHHH-HHHHHHHC--CCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCC----------
Confidence 67899999999955433 33444433 3345555543 23332 3344444455666654211111
Q ss_pred CCeEEEeChHHH-HHHHHcCCCCCCCccEEEeccchhhhcc-ccHHHHHHHHHhCCC
Q 027749 151 GVHVVSGTPGRV-CDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPP 205 (219)
Q Consensus 151 ~~~I~v~Tp~~l-~~~l~~~~~~~~~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~~~ 205 (219)
|... .+.+.... .+++++|++|=|=+|... +.-..+.+|.+.+.+
T Consensus 206 --------pAaVafDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k 252 (340)
T COG0552 206 --------PAAVAFDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKK 252 (340)
T ss_pred --------cHHHHHHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhcc
Confidence 2211 12222211 245666777776666543 455566666666544
No 485
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.27 E-value=3.1 Score=35.37 Aligned_cols=45 Identities=16% Similarity=0.176 Sum_probs=31.4
Q ss_pred CCccEEEeccchhhhccc--cHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 174 RAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~--~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+..-+||+|.+|.+-+.+ ....+.++-+-++.+.-.|.+|++..+
T Consensus 114 d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 114 DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 345689999999998875 334455555556666667888887764
No 486
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=92.22 E-value=0.29 Score=37.60 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=16.9
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~ 96 (219)
...+++|.|.||+|||.+....+...+.
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 3458999999999999554443444443
No 487
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.16 E-value=6 Score=32.85 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchhHHhH
Q 027749 71 RDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~ 88 (219)
+-+.+.||+|+|||....
T Consensus 115 ~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIG 132 (318)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 347789999999995543
No 488
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=92.16 E-value=0.59 Score=42.53 Aligned_cols=55 Identities=16% Similarity=0.273 Sum_probs=36.8
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHH--HHHHHHHHHHHhccc
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE--LATQTEKVILAIGDF 127 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~--l~~q~~~~~~~~~~~ 127 (219)
.++++|.|+||+|||..+...+.+.+.. +..++++=|-.. +...+...++..+..
T Consensus 176 ~~H~lv~G~TGsGKT~l~~~l~~q~i~~---g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 176 VGHTLVLGTTGVGKTRLAELLITQDIRR---GDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 3689999999999996664444444443 234777777654 666777777666543
No 489
>PRK10867 signal recognition particle protein; Provisional
Probab=92.15 E-value=3 Score=36.22 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=14.3
Q ss_pred EEEEcCCCCchhHHhHHH
Q 027749 73 VIAQAQSGTGKTSMIALT 90 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~~ 90 (219)
++++|++|+|||....-.
T Consensus 103 I~~vG~~GsGKTTtaakL 120 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKL 120 (433)
T ss_pred EEEECCCCCcHHHHHHHH
Confidence 679999999999655443
No 490
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.06 E-value=0.43 Score=42.77 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=27.1
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
++=.++|+||+.--+|..-+..+.+.++.+.++..++..
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiI 520 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALKKLLKGRTTLII 520 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEE
Confidence 444799999999888876677777777655555444433
No 491
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=92.06 E-value=0.2 Score=42.67 Aligned_cols=43 Identities=21% Similarity=0.403 Sum_probs=25.1
Q ss_pred hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
...+++++.|.||+|||. ++..++..+...+ -++||.=|..+.
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~g--~~~iI~D~kg~~ 55 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRARG--DRAIIYDPKGEF 55 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHHTT---EEEEEEETTHH
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHHcC--CEEEEEECCchH
Confidence 455799999999999995 5556666554432 234444444333
No 492
>PLN03232 ABC transporter C family member; Provisional
Probab=92.03 E-value=0.3 Score=48.88 Aligned_cols=39 Identities=23% Similarity=0.146 Sum_probs=27.6
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
++=+.+|+||+---+|..-...+++.++...+++-+|..
T Consensus 1388 r~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~I 1426 (1495)
T PLN03232 1388 RRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVI 1426 (1495)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 445789999998777776677787777776555555544
No 493
>TIGR00609 recB exodeoxyribonuclease V, beta subunit. All proteins in this family for which functions are known are DNA-DNA helicases that are used as part of an exonuclease-helicase complex (made up of RecBCD homologs) that function to generate substrates for the initiation of recombination and recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.91 E-value=0.41 Score=46.37 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=42.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccC--CCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~--~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
...+|.|..|+|||.+...-.+..+... -...++|+|+=|++-+.++.+++++.
T Consensus 10 G~~lieAsAGtGKT~ti~~~~lrll~~~~~~~~~~iLvvTFT~aAt~el~~RIr~r 65 (1087)
T TIGR00609 10 GTFLIEASAGTGKTFTIAQLYLRLLLEGGPLTVEEILVVTFTNAATEELKTRIRGR 65 (1087)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCCCChhhEEEEehhHHHHHHHHHHHHHH
Confidence 3678999999999977766666655543 23357999999999999999998764
No 494
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=91.87 E-value=3.6 Score=30.99 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=31.9
Q ss_pred CCCccEEEeccchhhhcccc--HHHHHHHHHhCCCCCeEEEEeecc
Q 027749 173 TRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~--~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
-..+++||+||+-..++.++ .+.+..+++.-|.+.-+|+-.-..
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 35789999999998887763 356778888877776666544433
No 495
>PHA00012 I assembly protein
Probab=91.80 E-value=2.1 Score=35.65 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=19.1
Q ss_pred EEEEcCCCCchhHHhHHHHHhhhcc
Q 027749 73 VIAQAQSGTGKTSMIALTVCQTVDT 97 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~~~~~~~~~ 97 (219)
.++.|..|+|||+.....+...+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 4789999999998777766555544
No 496
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.77 E-value=0.31 Score=39.26 Aligned_cols=17 Identities=35% Similarity=0.552 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHhH
Q 027749 72 DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~ 88 (219)
=++++|+|||||+....
T Consensus 129 LviiVGaTGSGKSTtmA 145 (375)
T COG5008 129 LVIIVGATGSGKSTTMA 145 (375)
T ss_pred eEEEECCCCCCchhhHH
Confidence 47899999999995543
No 497
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.70 E-value=1.7 Score=31.45 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=25.6
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+-+++++||.-.=++......+..+++.+. ..+++.|
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~til~~t 124 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEYP--GTVILVS 124 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--CEEEEEE
Confidence 4557899999887677666677777777663 3444443
No 498
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=91.65 E-value=0.23 Score=42.71 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=19.8
Q ss_pred HhCCCcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
-...+++++.|+||+|||.. +..++..+
T Consensus 39 ~~~~~h~~i~g~tGsGKt~~-i~~l~~~~ 66 (410)
T cd01127 39 DAEEAHTMIIGTTGTGKTTQ-IRELLASI 66 (410)
T ss_pred chhhccEEEEcCCCCCHHHH-HHHHHHHH
Confidence 34457999999999999964 44444443
No 499
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.58 E-value=1.7 Score=41.19 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.+.++.||+|+|||...
T Consensus 200 ~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CceEEECCCCCCHHHHH
Confidence 48999999999999444
No 500
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=91.45 E-value=0.89 Score=41.28 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=39.3
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH--HHHHHHHHHHHHhccc
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR--ELATQTEKVILAIGDF 127 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~--~l~~q~~~~~~~~~~~ 127 (219)
..+++|.|+||+|||......+.+.+.. +..++++=|.. ++...++..++..+..
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~---g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR---GDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 3589999999999997766655555543 34577777766 4667777777777653
Done!