Query 027749
Match_columns 219
No_of_seqs 134 out of 1598
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 01:01:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 4.5E-42 1.6E-46 271.8 21.1 199 20-218 16-219 (242)
2 3bor_A Human initiation factor 100.0 5.4E-41 1.8E-45 264.9 19.6 205 14-218 11-216 (237)
3 1vec_A ATP-dependent RNA helic 100.0 5.4E-40 1.8E-44 253.4 22.8 186 33-218 3-189 (206)
4 3iuy_A Probable ATP-dependent 100.0 1.7E-40 5.9E-45 260.3 19.4 192 26-218 12-210 (228)
5 1q0u_A Bstdead; DEAD protein, 100.0 2.3E-40 7.9E-45 258.1 19.0 188 32-219 3-194 (219)
6 3ber_A Probable ATP-dependent 100.0 3.3E-40 1.1E-44 262.3 19.5 190 29-218 39-229 (249)
7 2oxc_A Probable ATP-dependent 100.0 1.4E-39 4.6E-44 255.7 21.8 191 27-218 18-210 (230)
8 1qde_A EIF4A, translation init 100.0 1.3E-39 4.3E-44 254.5 21.4 191 27-218 8-198 (224)
9 2db3_A ATP-dependent RNA helic 100.0 1.2E-39 4.1E-44 278.2 22.3 197 22-218 45-248 (434)
10 3fmo_B ATP-dependent RNA helic 100.0 7.4E-40 2.5E-44 266.8 19.3 187 29-218 88-279 (300)
11 1wrb_A DJVLGB; RNA helicase, D 100.0 2E-39 6.9E-44 258.1 18.9 188 31-218 21-221 (253)
12 1t6n_A Probable ATP-dependent 100.0 2.4E-38 8.3E-43 246.7 22.8 191 29-219 10-203 (220)
13 2pl3_A Probable ATP-dependent 100.0 1.5E-38 5.1E-43 250.5 21.7 189 29-218 21-214 (236)
14 3ly5_A ATP-dependent RNA helic 100.0 5.2E-39 1.8E-43 257.2 19.0 186 33-218 52-244 (262)
15 2gxq_A Heat resistant RNA depe 100.0 2.1E-38 7.2E-43 244.6 21.5 183 34-218 2-187 (207)
16 3dkp_A Probable ATP-dependent 100.0 6E-38 2.1E-42 248.3 17.9 199 20-218 12-222 (245)
17 2j0s_A ATP-dependent RNA helic 100.0 2.7E-37 9.4E-42 261.0 22.7 199 20-218 24-222 (410)
18 2i4i_A ATP-dependent RNA helic 100.0 9E-37 3.1E-41 258.1 22.9 197 22-218 4-222 (417)
19 3eiq_A Eukaryotic initiation f 100.0 3.2E-35 1.1E-39 248.2 22.6 190 29-218 36-226 (414)
20 1s2m_A Putative ATP-dependent 100.0 4.3E-35 1.5E-39 246.7 22.3 189 30-218 18-206 (400)
21 1fuu_A Yeast initiation factor 100.0 1.2E-34 4E-39 243.2 20.5 189 29-218 17-205 (394)
22 1xti_A Probable ATP-dependent 100.0 3.6E-34 1.2E-38 240.1 21.8 187 33-219 8-197 (391)
23 3pey_A ATP-dependent RNA helic 100.0 1.8E-33 6.1E-38 235.7 22.0 184 31-218 3-189 (395)
24 3fht_A ATP-dependent RNA helic 100.0 1.6E-33 5.6E-38 237.5 21.4 190 26-218 18-212 (412)
25 1hv8_A Putative ATP-dependent 100.0 6.1E-33 2.1E-37 230.3 22.1 184 33-218 6-190 (367)
26 3fmp_B ATP-dependent RNA helic 100.0 2.1E-33 7.3E-38 242.1 19.9 186 30-218 89-279 (479)
27 3sqw_A ATP-dependent RNA helic 100.0 3.2E-33 1.1E-37 246.3 16.3 189 30-218 14-225 (579)
28 2z0m_A 337AA long hypothetical 100.0 3.7E-32 1.3E-36 223.3 20.7 172 40-218 1-172 (337)
29 3i5x_A ATP-dependent RNA helic 100.0 2.4E-32 8.2E-37 239.8 16.5 186 33-218 68-276 (563)
30 3oiy_A Reverse gyrase helicase 100.0 8.3E-31 2.9E-35 221.9 14.3 168 43-217 9-204 (414)
31 3fho_A ATP-dependent RNA helic 100.0 5.7E-31 1.9E-35 228.7 13.2 186 29-218 115-303 (508)
32 2zj8_A DNA helicase, putative 100.0 5.8E-30 2E-34 230.6 16.1 179 34-218 2-181 (720)
33 2va8_A SSO2462, SKI2-type heli 100.0 2E-29 6.7E-34 227.1 16.9 178 33-217 8-186 (715)
34 2p6r_A Afuhel308 helicase; pro 100.0 1.3E-29 4.3E-34 227.9 11.5 177 34-217 2-183 (702)
35 4a2p_A RIG-I, retinoic acid in 100.0 2.2E-28 7.5E-33 213.6 17.0 166 52-217 4-177 (556)
36 3l9o_A ATP-dependent RNA helic 100.0 4.2E-29 1.4E-33 232.6 12.2 172 33-218 162-333 (1108)
37 2v1x_A ATP-dependent DNA helic 100.0 2.3E-28 8E-33 215.2 14.9 173 35-218 23-212 (591)
38 3tbk_A RIG-I helicase domain; 100.0 4.4E-28 1.5E-32 211.3 16.4 164 55-218 4-176 (555)
39 4ddu_A Reverse gyrase; topoiso 100.0 3.8E-28 1.3E-32 226.1 16.5 161 50-217 74-261 (1104)
40 2ykg_A Probable ATP-dependent 100.0 6.1E-28 2.1E-32 216.5 17.1 173 45-217 3-184 (696)
41 3b6e_A Interferon-induced heli 100.0 6.4E-28 2.2E-32 186.6 12.1 165 50-215 28-216 (216)
42 4a2q_A RIG-I, retinoic acid in 100.0 2.7E-27 9.4E-32 215.3 17.6 168 50-217 243-418 (797)
43 1oyw_A RECQ helicase, ATP-depe 99.9 5.1E-28 1.7E-32 210.6 11.9 176 32-218 1-186 (523)
44 1gku_B Reverse gyrase, TOP-RG; 99.9 6.2E-27 2.1E-31 217.7 13.6 162 46-219 48-228 (1054)
45 2xgj_A ATP-dependent RNA helic 99.9 2.5E-26 8.6E-31 212.4 16.8 155 49-218 81-235 (1010)
46 4a2w_A RIG-I, retinoic acid in 99.9 3.3E-26 1.1E-30 211.0 15.9 168 50-217 243-418 (936)
47 4a4z_A Antiviral helicase SKI2 99.9 5.6E-26 1.9E-30 210.0 13.5 156 50-218 35-190 (997)
48 4f92_B U5 small nuclear ribonu 99.9 1.1E-25 3.9E-30 216.4 15.7 163 52-218 76-256 (1724)
49 4f92_B U5 small nuclear ribonu 99.9 3E-25 1E-29 213.5 18.3 174 40-218 911-1095(1724)
50 3llm_A ATP-dependent RNA helic 99.9 2.8E-25 9.4E-30 174.7 14.2 158 52-218 58-220 (235)
51 1wp9_A ATP-dependent RNA helic 99.9 1.2E-24 4E-29 186.0 17.0 159 55-217 9-167 (494)
52 1tf5_A Preprotein translocase 99.9 4.8E-25 1.6E-29 196.9 14.2 160 50-217 79-287 (844)
53 1rif_A DAR protein, DNA helica 99.9 4.2E-25 1.4E-29 178.1 11.8 152 55-218 113-264 (282)
54 4gl2_A Interferon-induced heli 99.9 8.1E-26 2.8E-30 202.8 7.0 163 55-218 7-193 (699)
55 2oca_A DAR protein, ATP-depend 99.9 3.8E-24 1.3E-28 185.6 12.8 153 54-218 112-264 (510)
56 1gm5_A RECG; helicase, replica 99.9 7E-24 2.4E-28 191.1 14.9 163 42-218 356-528 (780)
57 1nkt_A Preprotein translocase 99.9 1.1E-23 3.8E-28 188.2 15.2 160 50-217 107-315 (922)
58 2fsf_A Preprotein translocase 99.9 7.5E-24 2.6E-28 188.9 12.7 147 51-205 71-240 (853)
59 2eyq_A TRCF, transcription-rep 99.9 4.4E-22 1.5E-26 186.4 19.3 167 38-218 586-763 (1151)
60 2jlq_A Serine protease subunit 99.9 1.1E-22 3.6E-27 174.2 8.7 152 52-219 1-154 (451)
61 2fz4_A DNA repair protein RAD2 99.9 4.1E-21 1.4E-25 151.1 16.2 137 55-218 93-230 (237)
62 2fwr_A DNA repair protein RAD2 99.9 2.9E-21 9.8E-26 166.0 16.5 136 55-217 93-229 (472)
63 2whx_A Serine protease/ntpase/ 99.9 5.7E-23 1.9E-27 181.7 3.6 166 38-219 155-321 (618)
64 3o8b_A HCV NS3 protease/helica 99.9 3.7E-22 1.3E-26 176.2 8.6 144 55-218 217-362 (666)
65 2xau_A PRE-mRNA-splicing facto 99.8 2.3E-20 7.7E-25 168.8 15.0 178 30-218 69-252 (773)
66 2ipc_A Preprotein translocase 99.8 3.6E-20 1.2E-24 165.6 14.0 132 50-189 75-216 (997)
67 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 5.8E-20 2E-24 169.7 13.7 153 55-218 271-440 (1038)
68 3h1t_A Type I site-specific re 99.8 1.5E-20 5E-25 165.9 7.9 148 55-217 178-342 (590)
69 2wv9_A Flavivirin protease NS2 99.8 1E-20 3.5E-25 168.5 4.9 158 47-219 202-376 (673)
70 2v6i_A RNA helicase; membrane, 99.8 1.4E-19 4.8E-24 154.0 11.5 135 69-218 1-136 (431)
71 1yks_A Genome polyprotein [con 99.8 2.8E-21 9.5E-26 164.9 0.8 131 66-219 4-143 (440)
72 2z83_A Helicase/nucleoside tri 99.8 2.1E-19 7.3E-24 154.1 10.1 136 65-219 16-156 (459)
73 3crv_A XPD/RAD3 related DNA he 99.7 9.4E-18 3.2E-22 146.9 13.1 129 55-189 3-187 (551)
74 1z63_A Helicase of the SNF2/RA 99.7 5.6E-17 1.9E-21 140.2 10.9 149 54-217 36-188 (500)
75 3rc3_A ATP-dependent RNA helic 99.7 7.1E-17 2.4E-21 143.6 10.3 131 66-217 151-282 (677)
76 2vl7_A XPD; helicase, unknown 99.7 1.8E-16 6E-21 138.5 8.5 128 51-189 4-189 (540)
77 3dmq_A RNA polymerase-associat 99.6 4.8E-16 1.6E-20 143.8 8.2 158 54-217 152-317 (968)
78 1z3i_X Similar to RAD54-like; 99.6 2.6E-14 8.8E-19 127.2 16.0 155 55-216 55-230 (644)
79 3mwy_W Chromo domain-containin 99.6 6.7E-15 2.3E-19 134.0 11.2 154 55-216 236-405 (800)
80 4a15_A XPD helicase, ATP-depen 99.5 1.1E-13 3.9E-18 122.4 9.8 81 55-137 3-87 (620)
81 1w36_D RECD, exodeoxyribonucle 99.3 4.6E-11 1.6E-15 105.6 13.1 144 57-213 151-296 (608)
82 3jux_A Protein translocase sub 99.2 2.5E-10 8.5E-15 101.1 14.1 131 50-188 71-258 (822)
83 3upu_A ATP-dependent DNA helic 98.8 6E-08 2.1E-12 82.9 11.2 136 48-213 18-162 (459)
84 2gk6_A Regulator of nonsense t 98.7 2.5E-07 8.4E-12 82.1 14.2 69 54-124 179-247 (624)
85 3e1s_A Exodeoxyribonuclease V, 98.7 1.4E-07 4.9E-12 82.7 12.2 125 55-213 189-313 (574)
86 4b3f_X DNA-binding protein smu 98.7 5.4E-08 1.8E-12 86.6 8.4 67 55-124 189-256 (646)
87 2xzl_A ATP-dependent helicase 98.6 4.7E-07 1.6E-11 82.3 14.1 68 55-124 360-427 (802)
88 2wjy_A Regulator of nonsense t 98.6 5.9E-07 2E-11 81.6 14.1 68 55-124 356-423 (800)
89 2o0j_A Terminase, DNA packagin 98.0 3.7E-05 1.3E-09 64.0 9.8 122 55-189 163-287 (385)
90 3lfu_A DNA helicase II; SF1 he 97.9 0.00013 4.3E-09 64.7 12.2 109 54-186 8-119 (647)
91 3cpe_A Terminase, DNA packagin 97.8 0.00052 1.8E-08 60.4 13.6 120 55-189 163-287 (592)
92 3ec2_A DNA replication protein 97.7 0.00031 1E-08 51.8 9.2 19 69-87 37-55 (180)
93 3vkw_A Replicase large subunit 97.6 0.00028 9.4E-09 59.7 9.7 105 72-213 163-267 (446)
94 1c4o_A DNA nucleotide excision 97.5 0.00029 9.8E-09 62.9 8.7 69 52-127 6-79 (664)
95 1uaa_A REP helicase, protein ( 97.4 0.00032 1.1E-08 62.6 7.4 70 55-126 2-72 (673)
96 1l8q_A Chromosomal replication 97.4 0.00083 2.8E-08 54.3 9.3 18 70-87 37-54 (324)
97 1pjr_A PCRA; DNA repair, DNA r 97.3 0.00059 2E-08 61.4 8.4 70 54-125 10-80 (724)
98 2chg_A Replication factor C sm 97.3 0.0027 9.3E-08 47.5 11.0 39 174-213 101-139 (226)
99 2zpa_A Uncharacterized protein 97.3 0.0011 3.7E-08 58.8 9.6 113 55-217 175-289 (671)
100 3u4q_A ATP-dependent helicase/ 97.3 0.00055 1.9E-08 65.2 8.2 69 55-125 10-81 (1232)
101 2kjq_A DNAA-related protein; s 97.2 0.00016 5.6E-09 52.0 3.1 44 174-218 82-126 (149)
102 3te6_A Regulatory protein SIR3 97.2 0.0021 7E-08 52.1 9.4 40 174-216 131-173 (318)
103 3n70_A Transport activator; si 97.2 0.0045 1.5E-07 43.9 10.0 36 177-213 78-113 (145)
104 2v1u_A Cell division control p 97.1 0.0026 8.9E-08 52.1 9.8 29 175-203 130-159 (387)
105 2z4s_A Chromosomal replication 97.1 0.0023 7.7E-08 54.2 9.4 40 175-215 194-235 (440)
106 1a5t_A Delta prime, HOLB; zinc 97.1 0.002 6.7E-08 52.5 8.5 39 56-95 3-48 (334)
107 3bos_A Putative DNA replicatio 97.0 0.00069 2.4E-08 51.8 4.7 19 69-87 51-69 (242)
108 1sxj_E Activator 1 40 kDa subu 97.0 0.012 4E-07 47.9 12.0 40 174-214 133-172 (354)
109 2orw_A Thymidine kinase; TMTK, 97.0 0.0013 4.5E-08 48.9 5.7 39 70-111 3-41 (184)
110 3co5_A Putative two-component 96.9 0.011 3.6E-07 41.8 10.2 18 68-85 25-42 (143)
111 3h4m_A Proteasome-activating n 96.9 0.0045 1.5E-07 48.8 8.5 54 32-87 13-68 (285)
112 2b8t_A Thymidine kinase; deoxy 96.8 0.0063 2.1E-07 46.7 8.7 113 69-213 11-123 (223)
113 2qby_B CDC6 homolog 3, cell di 96.8 0.0019 6.6E-08 53.1 6.1 36 178-214 136-172 (384)
114 1d2n_A N-ethylmaleimide-sensit 96.8 0.015 5.1E-07 45.6 10.8 17 71-87 65-81 (272)
115 1xx6_A Thymidine kinase; NESG, 96.7 0.009 3.1E-07 44.7 8.8 39 70-111 8-46 (191)
116 1iqp_A RFCS; clamp loader, ext 96.7 0.0085 2.9E-07 47.9 9.0 39 174-213 109-147 (327)
117 2d7d_A Uvrabc system protein B 96.7 0.007 2.4E-07 53.9 9.2 67 55-127 12-83 (661)
118 3u61_B DNA polymerase accessor 96.7 0.0047 1.6E-07 49.7 7.4 40 174-213 104-143 (324)
119 3syl_A Protein CBBX; photosynt 96.6 0.0027 9.1E-08 50.7 5.6 37 177-213 132-176 (309)
120 1fnn_A CDC6P, cell division co 96.6 0.0038 1.3E-07 51.3 6.4 24 72-96 46-69 (389)
121 2w58_A DNAI, primosome compone 96.5 0.0048 1.6E-07 46.1 6.0 25 71-96 55-79 (202)
122 2qby_A CDC6 homolog 1, cell di 96.5 0.021 7.1E-07 46.6 10.3 18 70-87 45-62 (386)
123 2j9r_A Thymidine kinase; TK1, 96.5 0.012 4.2E-07 44.7 7.9 39 71-112 29-67 (214)
124 2orv_A Thymidine kinase; TP4A 96.4 0.019 6.6E-07 44.1 9.0 39 70-111 19-57 (234)
125 1njg_A DNA polymerase III subu 96.4 0.053 1.8E-06 40.7 11.6 38 175-213 126-163 (250)
126 3e2i_A Thymidine kinase; Zn-bi 96.4 0.0097 3.3E-07 45.3 7.1 99 69-200 27-125 (219)
127 1sxj_B Activator 1 37 kDa subu 96.4 0.0082 2.8E-07 47.9 7.1 38 175-213 107-144 (323)
128 1sxj_D Activator 1 41 kDa subu 96.3 0.011 3.8E-07 47.8 7.6 38 175-213 133-170 (353)
129 2p65_A Hypothetical protein PF 96.3 0.012 4E-07 42.8 6.7 18 70-87 43-60 (187)
130 1sxj_C Activator 1 40 kDa subu 96.2 0.049 1.7E-06 44.1 10.9 39 174-213 109-147 (340)
131 1w4r_A Thymidine kinase; type 96.2 0.02 6.7E-07 42.9 7.7 38 70-110 20-57 (195)
132 2gno_A DNA polymerase III, gam 96.2 0.06 2E-06 43.2 11.1 40 173-213 80-119 (305)
133 2qgz_A Helicase loader, putati 96.1 0.0053 1.8E-07 49.4 4.3 18 70-87 152-169 (308)
134 2chq_A Replication factor C sm 95.9 0.04 1.4E-06 43.7 8.6 42 33-87 14-55 (319)
135 1sxj_A Activator 1 95 kDa subu 95.8 0.1 3.5E-06 44.9 11.6 41 174-216 147-189 (516)
136 3eie_A Vacuolar protein sortin 95.6 0.028 9.7E-07 45.2 6.8 50 32-87 14-68 (322)
137 1jr3_A DNA polymerase III subu 95.6 0.075 2.6E-06 43.2 9.4 39 174-213 118-156 (373)
138 1w5s_A Origin recognition comp 95.5 0.039 1.3E-06 45.5 7.6 17 71-87 51-69 (412)
139 3pfi_A Holliday junction ATP-d 95.5 0.054 1.8E-06 43.6 8.1 17 71-87 56-72 (338)
140 3hu3_A Transitional endoplasmi 95.4 0.059 2E-06 46.2 8.3 40 177-216 299-348 (489)
141 3kl4_A SRP54, signal recogniti 95.3 0.16 5.3E-06 42.9 10.3 43 174-216 178-223 (433)
142 1hqc_A RUVB; extended AAA-ATPa 95.2 0.053 1.8E-06 43.3 7.3 18 70-87 38-55 (324)
143 2hjv_A ATP-dependent RNA helic 95.2 0.097 3.3E-06 37.6 7.9 73 102-184 36-112 (163)
144 2rb4_A ATP-dependent RNA helic 95.1 0.13 4.5E-06 37.3 8.4 73 101-183 34-110 (175)
145 3vfd_A Spastin; ATPase, microt 95.0 0.092 3.1E-06 43.4 8.2 18 70-87 148-165 (389)
146 2q6t_A DNAB replication FORK h 95.0 0.12 4E-06 43.7 8.9 140 69-214 199-361 (444)
147 2dr3_A UPF0273 protein PH0284; 94.9 0.25 8.6E-06 37.4 10.0 52 68-123 21-72 (247)
148 1fuk_A Eukaryotic initiation f 94.9 0.15 5.3E-06 36.5 8.3 73 101-183 30-106 (165)
149 3pvs_A Replication-associated 94.9 0.017 5.9E-07 48.9 3.5 17 71-87 51-67 (447)
150 4a1f_A DNAB helicase, replicat 94.8 0.014 4.8E-07 47.6 2.8 49 69-121 45-93 (338)
151 2r6a_A DNAB helicase, replicat 94.7 0.18 6.1E-06 42.7 9.5 139 69-214 202-362 (454)
152 3eaq_A Heat resistant RNA depe 94.6 0.14 4.7E-06 38.6 7.8 70 102-181 32-105 (212)
153 3bh0_A DNAB-like replicative h 94.5 0.12 4E-06 41.5 7.6 50 69-122 67-116 (315)
154 3i5x_A ATP-dependent RNA helic 94.5 0.46 1.6E-05 41.0 11.7 90 88-184 326-419 (563)
155 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.098 3.4E-06 39.3 6.6 19 69-87 22-40 (235)
156 2p6n_A ATP-dependent RNA helic 94.1 0.33 1.1E-05 35.8 8.8 72 102-183 55-130 (191)
157 3u4q_B ATP-dependent helicase/ 94.1 0.12 4.2E-06 48.9 7.8 87 73-185 4-91 (1166)
158 1t5i_A C_terminal domain of A 94.0 0.17 5.9E-06 36.6 6.9 74 101-184 31-108 (172)
159 3sqw_A ATP-dependent RNA helic 94.0 0.66 2.2E-05 40.3 11.7 87 91-184 278-368 (579)
160 2l8b_A Protein TRAI, DNA helic 93.9 0.066 2.2E-06 39.6 4.3 120 56-214 35-157 (189)
161 1n0w_A DNA repair protein RAD5 93.8 0.62 2.1E-05 35.1 10.0 23 69-91 23-45 (243)
162 2jgn_A DBX, DDX3, ATP-dependen 93.8 0.21 7.1E-06 36.7 7.0 90 80-183 29-122 (185)
163 3dm5_A SRP54, signal recogniti 93.7 0.72 2.4E-05 38.9 10.9 57 72-134 102-160 (443)
164 3m6a_A ATP-dependent protease 93.7 0.13 4.5E-06 44.6 6.6 19 69-87 107-125 (543)
165 2i4i_A ATP-dependent RNA helic 93.7 0.44 1.5E-05 39.1 9.6 72 100-181 275-350 (417)
166 3lda_A DNA repair protein RAD5 93.4 2.7 9.2E-05 34.9 13.9 26 29-54 80-105 (400)
167 1w36_B RECB, exodeoxyribonucle 93.3 0.17 5.9E-06 48.0 7.2 55 71-125 17-80 (1180)
168 2ehv_A Hypothetical protein PH 93.1 0.25 8.4E-06 37.6 6.7 40 174-213 134-179 (251)
169 2i1q_A DNA repair and recombin 93.1 0.66 2.3E-05 37.1 9.5 55 70-124 98-166 (322)
170 2fna_A Conserved hypothetical 92.8 2.9 0.0001 33.1 15.2 51 159-213 124-177 (357)
171 3bgw_A DNAB-like replicative h 92.7 0.12 4E-06 43.8 4.7 139 69-214 196-358 (444)
172 3i32_A Heat resistant RNA depe 92.6 0.36 1.2E-05 38.5 7.1 73 101-183 28-104 (300)
173 2oap_1 GSPE-2, type II secreti 92.3 0.49 1.7E-05 40.7 8.1 48 45-95 236-284 (511)
174 3pey_A ATP-dependent RNA helic 92.3 0.8 2.7E-05 37.0 9.2 76 100-185 242-321 (395)
175 3hjh_A Transcription-repair-co 92.2 0.92 3.1E-05 38.7 9.6 52 69-126 13-64 (483)
176 1g5t_A COB(I)alamin adenosyltr 92.2 1.4 4.7E-05 32.9 9.4 35 70-107 28-62 (196)
177 1ypw_A Transitional endoplasmi 92.1 0.63 2.2E-05 42.3 9.0 43 176-218 298-350 (806)
178 3pxi_A Negative regulator of g 92.0 0.46 1.6E-05 42.8 7.9 26 176-202 580-605 (758)
179 3cf2_A TER ATPase, transitiona 91.6 0.51 1.7E-05 42.9 7.7 43 176-218 298-350 (806)
180 4b4t_M 26S protease regulatory 91.5 0.07 2.4E-06 45.0 1.9 55 30-87 175-232 (434)
181 2v1x_A ATP-dependent DNA helic 91.3 1.2 4.1E-05 39.0 9.5 83 91-183 257-343 (591)
182 2db3_A ATP-dependent RNA helic 91.3 1 3.5E-05 37.5 8.8 69 104-182 303-375 (434)
183 1qvr_A CLPB protein; coiled co 91.1 0.2 7E-06 45.8 4.6 17 71-87 192-208 (854)
184 3fht_A ATP-dependent RNA helic 91.0 0.66 2.3E-05 37.9 7.3 72 102-183 267-342 (412)
185 1s2m_A Putative ATP-dependent 90.7 0.92 3.1E-05 37.0 8.0 73 101-183 258-334 (400)
186 3io5_A Recombination and repai 90.7 0.45 1.5E-05 38.4 5.7 42 72-114 30-71 (333)
187 2bjv_A PSP operon transcriptio 90.6 0.56 1.9E-05 36.2 6.2 20 68-87 27-46 (265)
188 1tue_A Replication protein E1; 90.2 0.49 1.7E-05 35.7 5.3 52 41-95 27-82 (212)
189 3cmu_A Protein RECA, recombina 90.1 0.48 1.6E-05 47.2 6.4 42 69-113 1426-1467(2050)
190 3hws_A ATP-dependent CLP prote 90.1 0.55 1.9E-05 38.2 6.0 19 69-87 50-68 (363)
191 2j0s_A ATP-dependent RNA helic 90.1 0.98 3.4E-05 37.0 7.6 72 102-183 277-352 (410)
192 3cf0_A Transitional endoplasmi 90.1 0.11 3.6E-06 41.4 1.6 55 32-87 11-66 (301)
193 1wp9_A ATP-dependent RNA helic 90.0 1.2 4.1E-05 36.9 8.1 96 79-185 340-447 (494)
194 4akg_A Glutathione S-transfera 89.9 0.76 2.6E-05 47.2 7.7 74 40-116 890-969 (2695)
195 3vkg_A Dynein heavy chain, cyt 89.9 1.5 5E-05 45.8 9.7 75 41-118 874-954 (3245)
196 1oyw_A RECQ helicase, ATP-depe 89.4 1.4 4.7E-05 37.9 8.2 73 101-183 236-312 (523)
197 1xti_A Probable ATP-dependent 89.4 1.4 4.6E-05 35.7 7.9 74 101-184 250-327 (391)
198 1e9r_A Conjugal transfer prote 89.3 0.27 9.2E-06 41.1 3.6 19 69-87 52-70 (437)
199 1ofh_A ATP-dependent HSL prote 89.1 1 3.5E-05 35.2 6.8 18 70-87 50-67 (310)
200 3nbx_X ATPase RAVA; AAA+ ATPas 89.1 0.61 2.1E-05 40.0 5.7 41 44-85 16-56 (500)
201 3b85_A Phosphate starvation-in 89.0 0.58 2E-05 35.1 4.9 33 55-87 7-39 (208)
202 1jbk_A CLPB protein; beta barr 88.9 0.22 7.5E-06 35.8 2.5 18 70-87 43-60 (195)
203 1p9r_A General secretion pathw 88.9 0.83 2.8E-05 38.2 6.3 35 60-95 155-191 (418)
204 2yjt_D ATP-dependent RNA helic 88.5 0.078 2.7E-06 38.3 0.0 74 100-183 29-106 (170)
205 1pzn_A RAD51, DNA repair and r 88.8 2.8 9.5E-05 34.0 9.3 17 174-190 230-246 (349)
206 4b4t_J 26S protease regulatory 88.8 0.24 8.2E-06 41.3 2.9 54 31-87 143-199 (405)
207 2gza_A Type IV secretion syste 88.8 0.54 1.8E-05 38.5 5.0 19 67-85 172-190 (361)
208 1u0j_A DNA replication protein 88.7 0.95 3.3E-05 35.4 6.1 45 41-88 72-122 (267)
209 2d7d_A Uvrabc system protein B 88.2 1.6 5.4E-05 38.8 7.9 76 101-186 445-524 (661)
210 4b4t_L 26S protease subunit RP 88.2 0.18 6E-06 42.6 1.7 54 31-87 176-232 (437)
211 4b4t_H 26S protease regulatory 87.7 0.25 8.4E-06 41.9 2.3 54 31-87 204-260 (467)
212 1hv8_A Putative ATP-dependent 87.6 1.5 5E-05 35.0 6.9 74 101-184 238-315 (367)
213 2r44_A Uncharacterized protein 87.4 0.3 1E-05 39.1 2.6 24 64-87 40-63 (331)
214 1yks_A Genome polyprotein [con 87.4 1.4 4.7E-05 37.0 6.8 67 102-180 178-245 (440)
215 4b4t_K 26S protease regulatory 87.3 0.23 7.9E-06 41.7 1.9 54 31-87 167-223 (428)
216 1kgd_A CASK, peripheral plasma 87.3 0.33 1.1E-05 35.3 2.5 19 69-87 4-22 (180)
217 2px0_A Flagellar biosynthesis 87.1 1.2 4.3E-05 35.2 6.0 20 70-89 105-124 (296)
218 1ojl_A Transcriptional regulat 87.0 1.1 3.6E-05 35.7 5.6 19 69-87 24-42 (304)
219 2pt7_A CAG-ALFA; ATPase, prote 86.9 0.63 2.2E-05 37.6 4.3 19 67-85 168-186 (330)
220 4f4c_A Multidrug resistance pr 86.9 2.7 9.3E-05 40.4 9.1 40 174-213 1234-1273(1321)
221 3vaa_A Shikimate kinase, SK; s 86.6 0.37 1.3E-05 35.6 2.5 21 68-88 23-43 (199)
222 1lvg_A Guanylate kinase, GMP k 86.6 0.36 1.2E-05 35.8 2.5 19 69-87 3-21 (198)
223 2ius_A DNA translocase FTSK; n 86.6 1 3.5E-05 38.7 5.5 27 69-95 166-192 (512)
224 1ls1_A Signal recognition part 86.4 3.6 0.00012 32.4 8.4 19 70-88 98-116 (295)
225 2xau_A PRE-mRNA-splicing facto 86.1 2.9 9.8E-05 37.9 8.5 75 101-181 303-393 (773)
226 3tbk_A RIG-I helicase domain; 86.1 1.9 6.4E-05 36.6 7.0 96 81-183 370-478 (555)
227 2qor_A Guanylate kinase; phosp 86.0 0.36 1.2E-05 35.8 2.2 21 67-87 9-29 (204)
228 2qz4_A Paraplegin; AAA+, SPG7, 86.0 0.4 1.4E-05 36.8 2.5 52 33-87 3-56 (262)
229 3b9p_A CG5977-PA, isoform A; A 85.9 0.37 1.3E-05 37.8 2.3 53 32-87 17-71 (297)
230 2eyu_A Twitching motility prot 85.8 0.43 1.5E-05 37.2 2.6 20 67-86 22-41 (261)
231 3a8t_A Adenylate isopentenyltr 85.4 0.47 1.6E-05 38.6 2.7 18 71-88 41-58 (339)
232 2x8a_A Nuclear valosin-contain 85.4 0.18 6.2E-06 39.6 0.3 53 32-87 6-61 (274)
233 3trf_A Shikimate kinase, SK; a 85.4 0.45 1.5E-05 34.4 2.4 19 70-88 5-23 (185)
234 3iij_A Coilin-interacting nucl 85.3 0.38 1.3E-05 34.7 2.0 21 68-88 9-29 (180)
235 1um8_A ATP-dependent CLP prote 85.1 2.1 7.1E-05 34.8 6.6 18 70-87 72-89 (376)
236 4ag6_A VIRB4 ATPase, type IV s 85.0 1.1 3.9E-05 36.7 5.0 42 175-216 262-307 (392)
237 3tau_A Guanylate kinase, GMP k 84.9 0.65 2.2E-05 34.5 3.2 19 69-87 7-25 (208)
238 3jvv_A Twitching mobility prot 84.8 0.56 1.9E-05 38.4 3.0 18 69-86 122-139 (356)
239 1qhx_A CPT, protein (chloramph 84.7 0.53 1.8E-05 33.8 2.5 18 70-87 3-20 (178)
240 1ex7_A Guanylate kinase; subst 84.7 0.54 1.9E-05 34.7 2.6 17 71-87 2-18 (186)
241 3e70_C DPA, signal recognition 84.7 5.7 0.00019 31.9 8.9 18 70-87 129-146 (328)
242 3uk6_A RUVB-like 2; hexameric 84.7 0.43 1.5E-05 38.6 2.2 18 70-87 70-87 (368)
243 1lv7_A FTSH; alpha/beta domain 84.5 0.47 1.6E-05 36.4 2.3 53 32-87 8-62 (257)
244 3eiq_A Eukaryotic initiation f 84.3 0.9 3.1E-05 37.1 4.1 73 101-183 280-356 (414)
245 4b4t_I 26S protease regulatory 84.2 0.32 1.1E-05 40.9 1.2 55 30-87 176-233 (437)
246 2eyq_A TRCF, transcription-rep 84.2 1.8 6.3E-05 41.0 6.5 78 101-186 812-893 (1151)
247 2j41_A Guanylate kinase; GMP, 84.0 0.54 1.8E-05 34.6 2.3 20 68-87 4-23 (207)
248 3lw7_A Adenylate kinase relate 83.9 0.52 1.8E-05 33.3 2.2 16 72-87 3-18 (179)
249 1y63_A LMAJ004144AAA protein; 83.9 0.6 2E-05 34.0 2.5 19 69-87 9-27 (184)
250 1c4o_A DNA nucleotide excision 83.8 3.4 0.00012 36.6 7.8 76 101-186 439-518 (664)
251 2iut_A DNA translocase FTSK; n 83.8 1.6 5.3E-05 38.1 5.4 41 70-110 214-255 (574)
252 1zp6_A Hypothetical protein AT 83.8 0.37 1.3E-05 35.1 1.3 21 67-87 6-26 (191)
253 3exa_A TRNA delta(2)-isopenten 83.6 0.75 2.6E-05 37.0 3.1 16 72-87 5-20 (322)
254 1ixz_A ATP-dependent metallopr 83.6 0.42 1.4E-05 36.7 1.6 54 31-87 11-66 (254)
255 1xwi_A SKD1 protein; VPS4B, AA 83.5 0.54 1.9E-05 37.7 2.3 50 32-87 8-62 (322)
256 2zts_A Putative uncharacterize 83.4 1.2 4E-05 33.6 4.2 51 70-123 30-80 (251)
257 1kag_A SKI, shikimate kinase I 83.1 0.7 2.4E-05 32.9 2.6 18 70-87 4-21 (173)
258 2ewv_A Twitching motility prot 83.1 0.69 2.4E-05 38.0 2.8 20 67-86 133-152 (372)
259 2oca_A DAR protein, ATP-depend 83.0 10 0.00034 32.0 10.2 74 103-185 349-426 (510)
260 3tr0_A Guanylate kinase, GMP k 83.0 0.68 2.3E-05 34.0 2.5 19 69-87 6-24 (205)
261 1z6g_A Guanylate kinase; struc 82.9 0.73 2.5E-05 34.6 2.7 20 68-87 21-40 (218)
262 4f4c_A Multidrug resistance pr 82.9 5 0.00017 38.6 8.9 40 174-213 571-610 (1321)
263 3t15_A Ribulose bisphosphate c 82.9 0.53 1.8E-05 37.2 2.0 17 71-87 37-53 (293)
264 2ze6_A Isopentenyl transferase 82.8 0.59 2E-05 36.1 2.2 17 72-88 3-19 (253)
265 3ney_A 55 kDa erythrocyte memb 82.8 0.94 3.2E-05 33.7 3.2 19 69-87 18-36 (197)
266 2qmh_A HPR kinase/phosphorylas 82.7 0.75 2.6E-05 34.5 2.6 19 69-87 33-51 (205)
267 2wv9_A Flavivirin protease NS2 82.7 3.4 0.00012 36.7 7.3 68 101-180 410-478 (673)
268 2qp9_X Vacuolar protein sortin 82.4 0.71 2.4E-05 37.6 2.6 18 70-87 84-101 (355)
269 3foz_A TRNA delta(2)-isopenten 82.3 0.68 2.3E-05 37.2 2.4 16 72-87 12-27 (316)
270 3ice_A Transcription terminati 82.1 2.6 8.8E-05 35.1 5.8 33 55-87 156-191 (422)
271 3a00_A Guanylate kinase, GMP k 82.0 0.8 2.7E-05 33.3 2.6 17 71-87 2-18 (186)
272 2ykg_A Probable ATP-dependent 81.9 2.4 8.2E-05 37.4 6.1 91 88-184 385-488 (696)
273 3nwn_A Kinesin-like protein KI 81.9 1.2 4E-05 36.5 3.7 24 64-87 97-122 (359)
274 2c9o_A RUVB-like 1; hexameric 81.7 0.7 2.4E-05 39.0 2.4 19 70-88 63-81 (456)
275 2cvh_A DNA repair and recombin 81.6 0.94 3.2E-05 33.5 2.9 21 69-89 19-39 (220)
276 4fcw_A Chaperone protein CLPB; 81.6 1.1 3.9E-05 35.1 3.5 17 71-87 48-64 (311)
277 1s96_A Guanylate kinase, GMP k 81.4 0.83 2.8E-05 34.5 2.5 21 67-87 13-33 (219)
278 1kht_A Adenylate kinase; phosp 81.3 0.82 2.8E-05 33.0 2.4 18 70-87 3-20 (192)
279 3b5x_A Lipid A export ATP-bind 81.2 6.1 0.00021 34.3 8.3 40 174-213 497-536 (582)
280 3d8b_A Fidgetin-like protein 1 81.1 0.8 2.7E-05 37.2 2.5 18 70-87 117-134 (357)
281 4eun_A Thermoresistant glucoki 81.1 0.87 3E-05 33.5 2.5 19 69-87 28-46 (200)
282 4gp7_A Metallophosphoesterase; 81.0 0.72 2.5E-05 33.2 2.0 20 69-88 8-27 (171)
283 1bg2_A Kinesin; motor protein, 81.0 1.4 4.9E-05 35.5 3.9 24 64-87 70-95 (325)
284 3kb2_A SPBC2 prophage-derived 80.8 0.8 2.7E-05 32.4 2.2 17 72-88 3-19 (173)
285 1ly1_A Polynucleotide kinase; 80.7 0.81 2.8E-05 32.7 2.2 16 72-87 4-19 (181)
286 1iy2_A ATP-dependent metallopr 80.6 0.62 2.1E-05 36.3 1.6 54 31-87 35-90 (278)
287 2jlq_A Serine protease subunit 80.6 4.8 0.00016 33.7 7.2 67 102-180 189-256 (451)
288 1knq_A Gluconate kinase; ALFA/ 80.5 0.76 2.6E-05 32.9 2.0 18 70-87 8-25 (175)
289 2r62_A Cell division protease 80.4 0.43 1.5E-05 36.8 0.6 18 70-87 44-61 (268)
290 1np6_A Molybdopterin-guanine d 80.3 2.5 8.6E-05 30.6 4.7 37 72-109 8-44 (174)
291 3dc4_A Kinesin-like protein NO 80.3 1.3 4.5E-05 36.0 3.5 23 65-87 88-112 (344)
292 3d3q_A TRNA delta(2)-isopenten 80.1 1.2 4.1E-05 36.2 3.2 16 72-87 9-24 (340)
293 1g8p_A Magnesium-chelatase 38 79.8 0.56 1.9E-05 37.6 1.1 18 70-87 45-62 (350)
294 1znw_A Guanylate kinase, GMP k 79.7 1 3.6E-05 33.3 2.6 22 66-87 16-37 (207)
295 2v9p_A Replication protein E1; 79.7 1.2 4.2E-05 35.5 3.1 19 68-86 124-142 (305)
296 3cmw_A Protein RECA, recombina 79.6 2.3 7.9E-05 41.9 5.4 90 70-189 1431-1523(1706)
297 3cm0_A Adenylate kinase; ATP-b 79.6 0.69 2.4E-05 33.4 1.5 19 69-87 3-21 (186)
298 2z43_A DNA repair and recombin 79.6 4.5 0.00015 32.3 6.4 54 70-123 107-164 (324)
299 3p32_A Probable GTPase RV1496/ 79.5 20 0.00069 28.8 10.5 16 72-87 81-96 (355)
300 4gl2_A Interferon-induced heli 79.5 1.1 3.8E-05 39.6 3.1 75 101-181 400-488 (699)
301 1cr0_A DNA primase/helicase; R 79.5 1.7 5.7E-05 34.1 3.9 20 68-87 33-52 (296)
302 4a14_A Kinesin, kinesin-like p 79.5 1.7 5.8E-05 35.3 3.9 23 65-87 77-101 (344)
303 2z0m_A 337AA long hypothetical 79.4 3.9 0.00013 32.0 6.1 71 100-184 219-293 (337)
304 1c9k_A COBU, adenosylcobinamid 79.4 1.4 4.9E-05 32.2 3.2 43 73-122 2-44 (180)
305 4a2p_A RIG-I, retinoic acid in 79.3 3.6 0.00012 34.9 6.2 98 80-184 370-480 (556)
306 2vvg_A Kinesin-2; motor protei 79.3 1.7 6E-05 35.4 3.9 23 65-87 83-107 (350)
307 3crm_A TRNA delta(2)-isopenten 79.1 1.2 4.1E-05 35.9 2.9 17 72-88 7-23 (323)
308 2zfi_A Kinesin-like protein KI 79.1 1.8 6E-05 35.6 3.9 24 64-87 82-107 (366)
309 2y65_A Kinesin, kinesin heavy 79.0 1.8 6.1E-05 35.5 3.9 23 65-87 78-102 (365)
310 4etp_A Kinesin-like protein KA 79.0 1.6 5.6E-05 36.3 3.7 25 63-87 132-158 (403)
311 2v6i_A RNA helicase; membrane, 78.9 3.5 0.00012 34.4 5.8 66 102-179 172-238 (431)
312 3mm4_A Histidine kinase homolo 78.9 16 0.00056 26.5 9.7 123 67-216 17-161 (206)
313 2h58_A Kinesin-like protein KI 78.8 1.9 6.4E-05 34.9 3.9 25 63-87 72-98 (330)
314 3b6u_A Kinesin-like protein KI 78.8 1.7 5.8E-05 35.7 3.7 23 65-87 95-119 (372)
315 3lre_A Kinesin-like protein KI 78.7 1.7 5.9E-05 35.4 3.7 23 65-87 99-123 (355)
316 1nlf_A Regulatory protein REPA 78.6 4.7 0.00016 31.2 6.2 25 65-89 25-49 (279)
317 1goj_A Kinesin, kinesin heavy 78.6 1.8 6E-05 35.4 3.8 23 65-87 74-98 (355)
318 3gbj_A KIF13B protein; kinesin 78.6 1.7 5.9E-05 35.4 3.7 25 63-87 84-110 (354)
319 1v8k_A Kinesin-like protein KI 78.6 1.7 5.8E-05 36.2 3.7 23 65-87 148-172 (410)
320 1t5c_A CENP-E protein, centrom 78.5 1.8 6.1E-05 35.3 3.7 24 64-87 70-95 (349)
321 3t0q_A AGR253WP; kinesin, alph 78.5 1.8 6.1E-05 35.3 3.7 25 63-87 77-103 (349)
322 2nr8_A Kinesin-like protein KI 78.5 1.8 6.1E-05 35.4 3.7 24 64-87 96-121 (358)
323 2zan_A Vacuolar protein sortin 78.3 1 3.6E-05 37.8 2.4 54 31-87 129-184 (444)
324 3uie_A Adenylyl-sulfate kinase 78.0 1 3.5E-05 33.1 2.0 19 69-87 24-42 (200)
325 2v54_A DTMP kinase, thymidylat 78.0 1.3 4.3E-05 32.4 2.5 19 69-87 3-21 (204)
326 2rhm_A Putative kinase; P-loop 77.9 0.97 3.3E-05 32.7 1.9 18 70-87 5-22 (193)
327 1tf7_A KAIC; homohexamer, hexa 77.9 11 0.00038 32.2 8.8 125 67-214 278-414 (525)
328 1x88_A Kinesin-like protein KI 77.8 1.8 6E-05 35.5 3.5 24 64-87 81-106 (359)
329 3nwj_A ATSK2; P loop, shikimat 77.8 1.6 5.3E-05 33.8 3.1 20 69-88 47-66 (250)
330 2c95_A Adenylate kinase 1; tra 77.6 1.2 4.2E-05 32.2 2.4 20 68-87 7-26 (196)
331 2r2a_A Uncharacterized protein 77.6 1.7 5.8E-05 32.3 3.2 18 72-89 7-24 (199)
332 1f9v_A Kinesin-like protein KA 77.6 1.7 5.7E-05 35.4 3.3 25 63-87 76-102 (347)
333 3t61_A Gluconokinase; PSI-biol 77.4 1.2 4E-05 32.7 2.2 17 71-87 19-35 (202)
334 3u06_A Protein claret segregat 77.4 1.8 6.3E-05 36.0 3.6 25 63-87 130-156 (412)
335 1m7g_A Adenylylsulfate kinase; 77.2 1.5 5E-05 32.6 2.8 29 58-87 14-42 (211)
336 2heh_A KIF2C protein; kinesin, 77.1 2 7E-05 35.5 3.7 24 65-88 128-153 (387)
337 1xjc_A MOBB protein homolog; s 77.1 3.1 0.0001 30.1 4.3 26 72-98 6-31 (169)
338 2bdt_A BH3686; alpha-beta prot 77.0 1.2 4.2E-05 32.2 2.2 17 71-87 3-19 (189)
339 3eph_A TRNA isopentenyltransfe 77.0 1.5 5.1E-05 36.6 2.9 19 184-202 209-227 (409)
340 3lnc_A Guanylate kinase, GMP k 76.9 0.99 3.4E-05 34.0 1.7 20 68-87 25-44 (231)
341 3hr8_A Protein RECA; alpha and 76.9 2.3 7.8E-05 34.7 3.9 41 70-113 61-101 (356)
342 2wbe_C Bipolar kinesin KRP-130 76.8 1.9 6.5E-05 35.5 3.5 22 66-87 95-118 (373)
343 3cob_A Kinesin heavy chain-lik 76.7 1.7 5.9E-05 35.6 3.2 25 63-87 71-97 (369)
344 4a2w_A RIG-I, retinoic acid in 76.6 8.5 0.00029 35.6 8.1 98 80-184 611-721 (936)
345 3o8b_A HCV NS3 protease/helica 76.6 4.5 0.00015 35.9 6.0 66 101-180 396-461 (666)
346 2owm_A Nckin3-434, related to 76.6 2.2 7.7E-05 35.9 3.9 23 65-87 130-154 (443)
347 3k1j_A LON protease, ATP-depen 76.2 5 0.00017 35.1 6.2 23 65-87 55-77 (604)
348 3f9v_A Minichromosome maintena 76.2 1.5 5.2E-05 38.4 2.9 14 72-85 329-342 (595)
349 1gvn_B Zeta; postsegregational 76.1 1.2 4.3E-05 35.0 2.1 17 71-87 34-50 (287)
350 1v5w_A DMC1, meiotic recombina 76.1 3.4 0.00012 33.3 4.8 53 71-123 123-179 (343)
351 1in4_A RUVB, holliday junction 76.0 1.8 6.2E-05 34.7 3.2 17 71-87 52-68 (334)
352 1aky_A Adenylate kinase; ATP:A 76.0 1.5 5.2E-05 32.7 2.5 18 70-87 4-21 (220)
353 3bfn_A Kinesin-like protein KI 76.0 1.9 6.5E-05 35.7 3.2 32 56-87 75-116 (388)
354 1f2t_A RAD50 ABC-ATPase; DNA d 76.0 1.4 4.8E-05 31.0 2.2 15 72-86 25-39 (149)
355 1via_A Shikimate kinase; struc 76.0 1.5 5.2E-05 31.3 2.5 17 72-88 6-22 (175)
356 1sky_E F1-ATPase, F1-ATP synth 75.8 36 0.0012 28.9 11.7 22 66-87 147-168 (473)
357 2pez_A Bifunctional 3'-phospho 75.5 1.3 4.5E-05 31.8 2.0 19 69-87 4-22 (179)
358 1zuh_A Shikimate kinase; alpha 75.3 1.5 5.2E-05 31.0 2.3 19 71-89 8-26 (168)
359 3qf7_A RAD50; ABC-ATPase, ATPa 75.3 1.3 4.6E-05 36.1 2.2 40 174-213 302-342 (365)
360 3pxg_A Negative regulator of g 75.3 1.4 4.9E-05 37.2 2.5 19 70-88 201-219 (468)
361 4akg_A Glutathione S-transfera 75.2 4.7 0.00016 41.6 6.3 21 67-87 1264-1284(2695)
362 1zd8_A GTP:AMP phosphotransfer 74.9 1.5 5.1E-05 32.9 2.2 18 70-87 7-24 (227)
363 2iyv_A Shikimate kinase, SK; t 74.9 1.8 6.2E-05 31.1 2.6 17 71-87 3-19 (184)
364 1xp8_A RECA protein, recombina 74.8 3.2 0.00011 34.0 4.3 39 70-111 74-112 (366)
365 1tev_A UMP-CMP kinase; ploop, 74.8 1.5 5.2E-05 31.6 2.2 17 71-87 4-20 (196)
366 1zak_A Adenylate kinase; ATP:A 74.7 1.7 5.8E-05 32.4 2.5 18 70-87 5-22 (222)
367 2whx_A Serine protease/ntpase/ 74.5 10 0.00034 33.3 7.7 67 102-180 356-423 (618)
368 2rep_A Kinesin-like protein KI 74.5 2.2 7.6E-05 35.1 3.3 24 64-87 108-133 (376)
369 2cdn_A Adenylate kinase; phosp 74.5 1.8 6.1E-05 31.7 2.6 17 71-87 21-37 (201)
370 3rc3_A ATP-dependent RNA helic 74.5 11 0.00039 33.4 8.1 72 104-186 323-400 (677)
371 1e6c_A Shikimate kinase; phosp 74.4 1.8 6.1E-05 30.7 2.5 17 71-87 3-19 (173)
372 1g41_A Heat shock protein HSLU 74.4 1.8 6E-05 36.6 2.7 18 70-87 50-67 (444)
373 4ag6_A VIRB4 ATPase, type IV s 74.4 2.8 9.7E-05 34.3 4.0 21 69-89 34-54 (392)
374 1ye8_A Protein THEP1, hypothet 74.3 1.7 5.7E-05 31.6 2.3 29 174-202 98-128 (178)
375 2yvu_A Probable adenylyl-sulfa 74.3 1.5 5.1E-05 31.7 2.0 20 69-88 12-31 (186)
376 2qt1_A Nicotinamide riboside k 74.2 0.76 2.6E-05 33.9 0.4 23 66-88 17-39 (207)
377 4a2q_A RIG-I, retinoic acid in 74.1 5.8 0.0002 35.8 6.3 98 80-184 611-721 (797)
378 2bwj_A Adenylate kinase 5; pho 74.0 1.6 5.3E-05 31.7 2.1 19 69-87 11-29 (199)
379 3c8u_A Fructokinase; YP_612366 73.9 1.5 5.1E-05 32.5 2.0 18 69-86 21-38 (208)
380 2zr9_A Protein RECA, recombina 73.9 3.9 0.00013 33.1 4.7 39 69-110 60-98 (349)
381 3fb4_A Adenylate kinase; psych 73.9 1.6 5.6E-05 32.2 2.2 17 72-88 2-18 (216)
382 2wwf_A Thymidilate kinase, put 73.7 1.7 6E-05 31.9 2.3 19 69-87 9-27 (212)
383 3dl0_A Adenylate kinase; phosp 73.7 1.7 5.9E-05 32.2 2.3 17 72-88 2-18 (216)
384 1nks_A Adenylate kinase; therm 73.7 1.6 5.4E-05 31.4 2.0 16 72-87 3-18 (194)
385 3kta_A Chromosome segregation 73.6 1.6 5.4E-05 31.4 2.0 16 72-87 28-43 (182)
386 1u94_A RECA protein, recombina 73.6 4.4 0.00015 33.0 4.8 40 69-111 62-101 (356)
387 3vkg_A Dynein heavy chain, cyt 73.5 6.8 0.00023 41.1 7.0 19 67-85 1301-1319(3245)
388 2plr_A DTMP kinase, probable t 73.4 1.6 5.4E-05 32.0 2.0 18 70-87 4-21 (213)
389 1nn5_A Similar to deoxythymidy 73.3 1.8 6.3E-05 31.8 2.4 20 69-88 8-27 (215)
390 1ak2_A Adenylate kinase isoenz 72.9 1.8 6.3E-05 32.6 2.3 19 69-87 15-33 (233)
391 2ce7_A Cell division protein F 72.8 1.7 5.7E-05 37.0 2.2 51 32-87 12-66 (476)
392 3asz_A Uridine kinase; cytidin 72.8 1.6 5.3E-05 32.2 1.9 18 70-87 6-23 (211)
393 3fho_A ATP-dependent RNA helic 72.7 1.2 3.9E-05 38.1 1.2 73 101-183 357-433 (508)
394 1qf9_A UMP/CMP kinase, protein 72.6 1.7 6E-05 31.2 2.1 16 72-87 8-23 (194)
395 1cke_A CK, MSSA, protein (cyti 72.4 1.8 6.3E-05 32.2 2.2 18 71-88 6-23 (227)
396 2vli_A Antibiotic resistance p 72.4 1.6 5.4E-05 31.3 1.7 19 70-88 5-23 (183)
397 2pt5_A Shikimate kinase, SK; a 71.9 2.1 7.1E-05 30.2 2.3 16 72-87 2-17 (168)
398 3tif_A Uncharacterized ABC tra 71.8 1.8 6E-05 33.0 2.0 31 174-204 162-192 (235)
399 2jaq_A Deoxyguanosine kinase; 71.8 2 6.8E-05 31.2 2.2 16 72-87 2-17 (205)
400 3cf2_A TER ATPase, transitiona 71.8 1.3 4.6E-05 40.2 1.5 55 32-87 473-528 (806)
401 1jjv_A Dephospho-COA kinase; P 71.7 2 6.8E-05 31.5 2.2 16 72-87 4-19 (206)
402 1ukz_A Uridylate kinase; trans 71.6 2 6.9E-05 31.4 2.2 16 72-87 17-32 (203)
403 3fmp_B ATP-dependent RNA helic 71.4 0.82 2.8E-05 38.5 0.0 70 101-180 333-406 (479)
404 1nij_A Hypothetical protein YJ 71.2 3.2 0.00011 33.1 3.5 36 175-213 151-186 (318)
405 3tqc_A Pantothenate kinase; bi 71.2 9.1 0.00031 30.7 6.1 15 73-87 95-109 (321)
406 4a74_A DNA repair and recombin 71.1 2.3 7.9E-05 31.5 2.5 20 69-88 24-43 (231)
407 3pxi_A Negative regulator of g 70.9 2 7E-05 38.6 2.5 19 70-88 201-219 (758)
408 2if2_A Dephospho-COA kinase; a 70.9 2 6.8E-05 31.5 2.0 16 72-87 3-18 (204)
409 3be4_A Adenylate kinase; malar 70.8 2.1 7.3E-05 31.8 2.2 18 70-87 5-22 (217)
410 2r2a_A Uncharacterized protein 70.5 3 0.0001 30.9 3.0 40 176-215 88-132 (199)
411 3a4m_A L-seryl-tRNA(SEC) kinas 70.2 2.2 7.4E-05 32.9 2.2 17 71-87 5-21 (260)
412 3auy_A DNA double-strand break 70.1 2 6.7E-05 35.1 2.0 15 73-87 28-42 (371)
413 2pbr_A DTMP kinase, thymidylat 70.1 2.3 7.9E-05 30.6 2.2 16 72-87 2-17 (195)
414 2cbz_A Multidrug resistance-as 69.9 2.1 7.1E-05 32.7 2.0 26 175-200 145-170 (237)
415 4e22_A Cytidylate kinase; P-lo 69.8 2.5 8.6E-05 32.4 2.5 20 69-88 26-45 (252)
416 2z0h_A DTMP kinase, thymidylat 69.7 2.4 8.1E-05 30.7 2.2 16 73-88 3-18 (197)
417 1rj9_A FTSY, signal recognitio 69.7 5.8 0.0002 31.5 4.6 18 70-87 102-119 (304)
418 3l0o_A Transcription terminati 69.3 7 0.00024 32.5 5.1 33 55-87 157-192 (427)
419 1q57_A DNA primase/helicase; d 69.2 3.4 0.00012 35.2 3.4 51 68-121 240-290 (503)
420 2z83_A Helicase/nucleoside tri 69.1 6.2 0.00021 33.1 5.0 67 102-180 191-258 (459)
421 2va8_A SSO2462, SKI2-type heli 69.0 16 0.00056 32.3 7.9 75 101-181 252-362 (715)
422 2i3b_A HCR-ntpase, human cance 69.0 3.9 0.00013 30.0 3.3 42 173-217 103-146 (189)
423 2bbw_A Adenylate kinase 4, AK4 68.9 2.7 9.4E-05 31.9 2.5 18 70-87 27-44 (246)
424 1e4v_A Adenylate kinase; trans 68.9 2.4 8.1E-05 31.4 2.1 16 72-87 2-17 (214)
425 3qks_A DNA double-strand break 68.7 2.5 8.6E-05 31.3 2.2 15 72-86 25-39 (203)
426 2ffh_A Protein (FFH); SRP54, s 68.6 32 0.0011 28.6 9.1 18 72-89 100-117 (425)
427 1ry6_A Internal kinesin; kines 68.3 3.9 0.00013 33.4 3.4 19 69-87 82-102 (360)
428 3kta_B Chromosome segregation 68.3 4 0.00014 29.5 3.1 38 176-213 87-124 (173)
429 2qen_A Walker-type ATPase; unk 68.3 5 0.00017 31.7 4.1 36 177-213 130-171 (350)
430 1sgw_A Putative ABC transporte 67.8 2.6 8.7E-05 31.7 2.1 31 174-204 150-180 (214)
431 2p5t_B PEZT; postsegregational 67.5 1.7 5.8E-05 33.3 1.1 17 71-87 33-49 (253)
432 3sfz_A APAF-1, apoptotic pepti 67.4 7.5 0.00026 36.5 5.6 29 131-159 237-265 (1249)
433 2ghi_A Transport protein; mult 67.0 2.5 8.7E-05 32.7 2.0 38 175-212 173-210 (260)
434 3dmq_A RNA polymerase-associat 66.8 8.7 0.0003 35.7 5.8 90 100-202 502-597 (968)
435 2ff7_A Alpha-hemolysin translo 66.8 2.5 8.7E-05 32.4 1.9 39 174-212 162-200 (247)
436 2xb4_A Adenylate kinase; ATP-b 66.6 2.9 0.0001 31.3 2.2 16 72-87 2-17 (223)
437 3b9q_A Chloroplast SRP recepto 66.6 5.5 0.00019 31.5 3.9 17 71-87 101-117 (302)
438 1htw_A HI0065; nucleotide-bind 66.6 2.4 8.1E-05 30.2 1.6 18 68-85 31-48 (158)
439 1fuu_A Yeast initiation factor 66.5 1.2 4.1E-05 36.1 0.0 72 101-182 259-334 (394)
440 3h1t_A Type I site-specific re 66.3 27 0.00093 30.0 8.6 80 99-184 437-526 (590)
441 3gfo_A Cobalt import ATP-bindi 66.3 2.5 8.7E-05 33.1 1.8 30 174-203 160-189 (275)
442 1uf9_A TT1252 protein; P-loop, 66.1 2.8 9.7E-05 30.4 2.0 16 72-87 10-25 (203)
443 2pze_A Cystic fibrosis transme 66.1 3.4 0.00012 31.3 2.5 39 174-212 147-186 (229)
444 3tlx_A Adenylate kinase 2; str 66.0 4.6 0.00016 30.7 3.3 19 70-88 29-47 (243)
445 2r8r_A Sensor protein; KDPD, P 65.9 7.2 0.00025 29.6 4.2 20 72-91 8-27 (228)
446 1r6b_X CLPA protein; AAA+, N-t 65.6 3.1 0.00011 37.4 2.5 18 70-87 207-224 (758)
447 2dhr_A FTSH; AAA+ protein, hex 65.6 2.9 9.9E-05 35.8 2.2 52 31-87 26-81 (499)
448 1vht_A Dephospho-COA kinase; s 65.3 3.2 0.00011 30.7 2.2 17 71-87 5-21 (218)
449 2grj_A Dephospho-COA kinase; T 64.7 3.4 0.00012 30.4 2.2 17 72-88 14-30 (192)
450 1mv5_A LMRA, multidrug resista 64.6 2.5 8.4E-05 32.4 1.5 37 176-212 158-194 (243)
451 2zu0_C Probable ATP-dependent 64.4 3 0.0001 32.4 2.0 38 176-213 183-221 (267)
452 1b0u_A Histidine permease; ABC 64.4 3 0.0001 32.3 2.0 30 174-203 170-199 (262)
453 1g6h_A High-affinity branched- 64.3 3.8 0.00013 31.6 2.5 30 174-203 170-199 (257)
454 2dyk_A GTP-binding protein; GT 64.1 4.9 0.00017 27.5 2.9 13 72-84 3-15 (161)
455 3qkt_A DNA double-strand break 64.1 3.3 0.00011 33.3 2.2 40 174-213 271-311 (339)
456 4g1u_C Hemin import ATP-bindin 64.0 3.9 0.00013 31.8 2.5 29 175-203 165-193 (266)
457 3nh6_A ATP-binding cassette SU 64.0 2.5 8.6E-05 33.7 1.4 37 175-211 208-244 (306)
458 2pcj_A ABC transporter, lipopr 63.9 3.7 0.00013 30.9 2.3 30 174-203 157-186 (224)
459 1ji0_A ABC transporter; ATP bi 63.8 4 0.00014 31.1 2.5 40 174-213 156-196 (240)
460 1r6b_X CLPA protein; AAA+, N-t 63.8 3.1 0.00011 37.4 2.1 16 72-87 490-505 (758)
461 1zu4_A FTSY; GTPase, signal re 63.7 8.2 0.00028 30.8 4.4 17 72-88 107-123 (320)
462 2yz2_A Putative ABC transporte 63.5 3.2 0.00011 32.2 2.0 30 174-203 155-184 (266)
463 1rz3_A Hypothetical protein rb 63.5 3.4 0.00012 30.3 2.0 17 71-87 23-39 (201)
464 3aez_A Pantothenate kinase; tr 63.4 7.8 0.00027 30.8 4.3 18 70-87 90-107 (312)
465 2ixe_A Antigen peptide transpo 63.4 3.3 0.00011 32.3 2.0 40 174-213 173-214 (271)
466 1ltq_A Polynucleotide kinase; 63.3 3.6 0.00012 32.2 2.2 16 72-87 4-19 (301)
467 1vma_A Cell division protein F 63.2 18 0.00063 28.6 6.4 17 72-88 106-122 (306)
468 1ek0_A Protein (GTP-binding pr 63.2 5.3 0.00018 27.6 2.9 14 72-85 5-18 (170)
469 1vpl_A ABC transporter, ATP-bi 63.0 3.4 0.00011 32.0 2.0 31 174-204 163-193 (256)
470 2ged_A SR-beta, signal recogni 62.9 5.4 0.00018 28.5 3.0 14 71-84 49-62 (193)
471 2qi9_C Vitamin B12 import ATP- 62.4 4.3 0.00015 31.2 2.5 26 178-203 154-179 (249)
472 4h1g_A Maltose binding protein 62.4 6 0.00021 35.4 3.7 25 63-87 454-480 (715)
473 2d2e_A SUFC protein; ABC-ATPas 62.3 4.4 0.00015 31.1 2.5 38 176-213 162-200 (250)
474 2vhj_A Ntpase P4, P4; non- hyd 62.1 5 0.00017 32.4 2.8 21 69-89 122-142 (331)
475 2olj_A Amino acid ABC transpor 62.1 3.6 0.00012 32.0 2.0 30 174-203 176-205 (263)
476 2ihy_A ABC transporter, ATP-bi 62.0 3.5 0.00012 32.3 1.9 30 174-203 178-207 (279)
477 1z2a_A RAS-related protein RAB 62.0 5.7 0.00019 27.4 2.9 20 72-92 7-26 (168)
478 1z5z_A Helicase of the SNF2/RA 61.9 47 0.0016 25.6 8.5 95 78-184 92-192 (271)
479 1tf5_A Preprotein translocase 61.7 37 0.0013 31.0 8.6 73 103-185 434-516 (844)
480 1qvr_A CLPB protein; coiled co 61.6 6.2 0.00021 36.0 3.8 16 72-87 590-605 (854)
481 2xxa_A Signal recognition part 61.6 31 0.001 28.8 7.7 18 72-89 102-119 (433)
482 2nq2_C Hypothetical ABC transp 61.5 4.5 0.00015 31.1 2.4 30 174-203 145-174 (253)
483 2i3b_A HCR-ntpase, human cance 61.5 8.7 0.0003 28.0 3.9 18 70-87 1-18 (189)
484 4edh_A DTMP kinase, thymidylat 61.4 20 0.00067 26.6 6.0 19 69-87 5-23 (213)
485 2ce2_X GTPase HRAS; signaling 61.4 5.5 0.00019 27.2 2.8 14 72-85 5-18 (166)
486 1g16_A RAS-related protein SEC 61.4 5.5 0.00019 27.5 2.8 13 72-84 5-17 (170)
487 1nrj_B SR-beta, signal recogni 61.3 5.7 0.00019 29.1 2.9 15 71-85 13-27 (218)
488 1z0j_A RAB-22, RAS-related pro 61.2 5.9 0.0002 27.3 2.9 20 72-92 8-27 (170)
489 2vp4_A Deoxynucleoside kinase; 61.2 3.9 0.00013 30.7 2.0 17 69-85 19-35 (230)
490 1q3t_A Cytidylate kinase; nucl 61.1 4.8 0.00016 30.3 2.6 20 69-88 15-34 (236)
491 1ky3_A GTP-binding protein YPT 61.0 5.9 0.0002 27.7 2.9 14 72-85 10-23 (182)
492 2og2_A Putative signal recogni 60.8 7.8 0.00027 31.6 3.9 17 71-87 158-174 (359)
493 2jeo_A Uridine-cytidine kinase 60.8 3.6 0.00012 31.2 1.8 19 69-87 24-42 (245)
494 1svm_A Large T antigen; AAA+ f 60.6 5.5 0.00019 32.7 2.9 19 69-87 168-186 (377)
495 1uj2_A Uridine-cytidine kinase 60.5 4.4 0.00015 30.9 2.2 17 72-88 24-40 (252)
496 1kao_A RAP2A; GTP-binding prot 60.5 6.2 0.00021 27.0 2.9 14 72-85 5-18 (167)
497 1odf_A YGR205W, hypothetical 3 60.5 4.3 0.00015 32.0 2.2 16 72-87 33-48 (290)
498 3tmk_A Thymidylate kinase; pho 60.3 25 0.00085 26.3 6.4 48 69-121 4-53 (216)
499 1wms_A RAB-9, RAB9, RAS-relate 60.2 6.3 0.00021 27.5 2.9 13 72-84 9-21 (177)
500 1u8z_A RAS-related protein RAL 60.0 6.5 0.00022 27.0 2.9 14 72-85 6-19 (168)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.5e-42 Score=271.80 Aligned_cols=199 Identities=28% Similarity=0.424 Sum_probs=184.5
Q ss_pred cceeeccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC-
Q 027749 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS- 98 (219)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~- 98 (219)
.+.......++++.+|+++++++.+.+++.+.|+..|+++|.++++.+.+|+++++++|||+|||++|++|++..+...
T Consensus 16 ~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~ 95 (242)
T 3fe2_A 16 EITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP 95 (242)
T ss_dssp TEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSC
T ss_pred ceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhcc
Confidence 4455566678899999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred ----CCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCC
Q 027749 99 ----SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTR 174 (219)
Q Consensus 99 ----~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~ 174 (219)
..++++||++|+++|+.|+.+.++++....++.+..++|+.+...+...+.++++|+|+||++|.+++.++...++
T Consensus 96 ~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 175 (242)
T 3fe2_A 96 FLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR 175 (242)
T ss_dssp CCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCT
T ss_pred ccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcc
Confidence 3467899999999999999999999988889999999999998888888888999999999999999988888899
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
++++||+||||++.+++|...+..+++.++++.|+++||||+|+
T Consensus 176 ~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 219 (242)
T ss_dssp TCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCH
T ss_pred cccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCH
Confidence 99999999999999999999999999999999999999999985
No 2
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=5.4e-41 Score=264.90 Aligned_cols=205 Identities=51% Similarity=0.795 Sum_probs=166.2
Q ss_pred CCCCCCcceeeccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHh
Q 027749 14 GGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQ 93 (219)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~ 93 (219)
......+.....+..+++..+|+++++++.+.+++.++|+..|+++|.++++.+++++++++++|||+|||++|++++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~ 90 (237)
T 3bor_A 11 RENLYFQGGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 90 (237)
T ss_dssp ----------------CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHH
T ss_pred cccccCCCCcccCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHH
Confidence 33333334444555567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCC-CeEEEeChHHHHHHHHcCCCC
Q 027749 94 TVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLR 172 (219)
Q Consensus 94 ~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~I~v~Tp~~l~~~l~~~~~~ 172 (219)
.+.....++++||++|+++|+.|+.+.++++....+..+....|+.+...+...+..+ ++|+|+||+++.+++..+...
T Consensus 91 ~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~ 170 (237)
T 3bor_A 91 QLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLS 170 (237)
T ss_dssp HCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSC
T ss_pred HHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcC
Confidence 8876666778999999999999999999999888888888889988877776666555 899999999999999888888
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
++++++||+||||++.+++|...+..+++.++++.|++++|||+|+
T Consensus 171 ~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 171 PKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPT 216 (237)
T ss_dssp STTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred cccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCH
Confidence 8999999999999999999999999999999999999999999985
No 3
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=5.4e-40 Score=253.41 Aligned_cols=186 Identities=33% Similarity=0.628 Sum_probs=174.1
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHH
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 112 (219)
.+|+++++++.+++++.++|+..|+++|.++++.+.+++++++++|||+|||++|++|++..+.....++++||++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 57999999999999999999999999999999999999999999999999999999999998877667788999999999
Q ss_pred HHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc
Q 027749 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (219)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~ 191 (219)
|+.|+.+.+.++.... +..+....|+.+...+...+..+++|+|+||+++.+.+.++...++++++||+||||++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999998776 788888999998888877888899999999999999998888888999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 192 FKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 192 ~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
|...+..+++.++++.|++++|||+|.
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPL 189 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCH
Confidence 999999999999999999999999985
No 4
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=260.30 Aligned_cols=192 Identities=30% Similarity=0.435 Sum_probs=170.1
Q ss_pred cCCCCccCcccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC------
Q 027749 26 TEGVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------ 98 (219)
Q Consensus 26 ~~~~~~~~~~~~-~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~------ 98 (219)
...|++..+|++ +++++.+.+++.+.|+..|+++|.++++.+.+|+++++++|||+|||++|++|++..+...
T Consensus 12 ~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~ 91 (228)
T 3iuy_A 12 RLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQ 91 (228)
T ss_dssp CCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC--------
T ss_pred CcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhc
Confidence 345788899999 7999999999999999999999999999999999999999999999999999999877542
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccE
Q 027749 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (219)
Q Consensus 99 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~ 178 (219)
..++++||++|+++|+.|+.+.+.++. ..++.+..++|+.+...+...+.++++|+|+||+++.+++.+....++++++
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 256789999999999999999999986 4478888899998888888888889999999999999999888888999999
Q ss_pred EEeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 179 LVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 179 lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
||+||||++.+++|...+..+++.+++++|++++|||+|+
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPD 210 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCH
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCH
Confidence 9999999999999999999999999999999999999985
No 5
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2.3e-40 Score=258.14 Aligned_cols=188 Identities=34% Similarity=0.515 Sum_probs=172.2
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
..+|+++++++.+.+++.++|+..|+++|.++++.+.+++++++++|||+|||++|++|++..+.....+++++|++|++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 46799999999999999999999999999999999999999999999999999999999999988766678899999999
Q ss_pred HHHHHHHHHHHHhcccc----ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhh
Q 027749 112 ELATQTEKVILAIGDFI----NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (219)
Q Consensus 112 ~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l 187 (219)
+|+.|+.+.+.++.... ++.+..+.|+.+.......+..+++|+|+||+++.+.+.++...++++++||+||||++
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 99999999999988766 67888888888876666566678999999999999999888888899999999999999
Q ss_pred hccccHHHHHHHHHhCCCCCeEEEEeecccCC
Q 027749 188 LSRGFKDQIYDVYRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~~ 219 (219)
.+++|...+..+++.++++.|++++|||+|.+
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~ 194 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATIPEK 194 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCGG
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCCCHH
Confidence 99999999999999999999999999999863
No 6
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.3e-40 Score=262.26 Aligned_cols=190 Identities=32% Similarity=0.511 Sum_probs=176.3
Q ss_pred CCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEc
Q 027749 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (219)
+++..+|+++++++.+.++|.++|+..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....++++||++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 34568899999999999999999999999999999999999999999999999999999999999887776678899999
Q ss_pred CCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc-CCCCCCCccEEEeccchhh
Q 027749 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEM 187 (219)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~-~~~~~~~l~~lVvDE~h~l 187 (219)
|+++|+.|+.+.++++....++++..+.|+.+...+...+..+++|+|+||+++.+.+.+ +.+.++++++||+||||++
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh
Confidence 999999999999999988888999999999888777777788999999999999998876 5567899999999999999
Q ss_pred hccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 188 LSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
.+++|...+..+++.++++.|+++||||+|+
T Consensus 199 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 199 LNMDFETEVDKILKVIPRDRKTFLFSATMTK 229 (249)
T ss_dssp HHTTCHHHHHHHHHSSCSSSEEEEEESSCCH
T ss_pred hccChHHHHHHHHHhCCCCCeEEEEeccCCH
Confidence 9999999999999999999999999999985
No 7
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.4e-39 Score=255.72 Aligned_cols=191 Identities=33% Similarity=0.544 Sum_probs=170.1
Q ss_pred CCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEE
Q 027749 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (219)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~li 106 (219)
..+.+..+|+++++++.+.+++.++|+..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....++++||
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~li 97 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILI 97 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEE
Confidence 34567788999999999999999999999999999999999999999999999999999999999998877666788999
Q ss_pred EcCCHHHHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccch
Q 027749 107 LSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (219)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h 185 (219)
++|+++|+.|+.+.++++.... ++++..+.|+.+...+...+ .+++|+|+||+++.+++..+.+.++++++||+||||
T Consensus 98 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah 176 (230)
T 2oxc_A 98 LAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEAD 176 (230)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHH
T ss_pred EeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCch
Confidence 9999999999999999998665 78888888888876665544 579999999999999998888888999999999999
Q ss_pred hhhccc-cHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 186 EMLSRG-FKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 186 ~l~~~~-~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
++.+++ |...+..+++.++++.|++++|||+|.
T Consensus 177 ~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~ 210 (230)
T 2oxc_A 177 KLLEEGSFQEQINWIYSSLPASKQMLAVSATYPE 210 (230)
T ss_dssp HHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCH
T ss_pred HhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCH
Confidence 999987 999999999999999999999999985
No 8
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.3e-39 Score=254.52 Aligned_cols=191 Identities=51% Similarity=0.836 Sum_probs=168.7
Q ss_pred CCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEE
Q 027749 27 EGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (219)
Q Consensus 27 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~li 106 (219)
..++.+.+|+++++++.+.+.+.++|+..|+++|.++++.+.+++++++++|||+|||++|++++++.+.....++++||
T Consensus 8 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~li 87 (224)
T 1qde_A 8 NYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALM 87 (224)
T ss_dssp SCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEE
T ss_pred ccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999877767788999
Q ss_pred EcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchh
Q 027749 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (219)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~ 186 (219)
++|+++|+.|+.+.+.++....++.+..+.|+.+...+...+.+ ++|+|+||+++.+.+.++...++++++||+||||+
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~ 166 (224)
T 1qde_A 88 LAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADE 166 (224)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred EECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhH
Confidence 99999999999999999988888999999988887666555544 89999999999999988888889999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 187 MLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 187 l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+.+++|...+..+++.++++.|++++|||+|+
T Consensus 167 ~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 167 MLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred HhhhhhHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 99999999999999999999999999999985
No 9
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-39 Score=278.18 Aligned_cols=197 Identities=27% Similarity=0.423 Sum_probs=181.3
Q ss_pred eeeccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC--
Q 027749 22 VFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-- 99 (219)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-- 99 (219)
+......+.++.+|+++++++.+++++.++||..|+|+|.++||.+++|+++++++|||+|||++|++|+++.+....
T Consensus 45 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~ 124 (434)
T 2db3_A 45 KVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE 124 (434)
T ss_dssp EEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC
T ss_pred EecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc
Confidence 344455688899999999999999999999999999999999999999999999999999999999999999876532
Q ss_pred ---CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 100 ---REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 100 ---~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
.++++||++||++|+.|+++.++++....++++..++|+.+...+...+..+++|+|+||++|.+++.+....++++
T Consensus 125 ~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~ 204 (434)
T 2db3_A 125 LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDT 204 (434)
T ss_dssp CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTC
T ss_pred cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccC
Confidence 36789999999999999999999999888899999999999888888888899999999999999999888889999
Q ss_pred cEEEeccchhhhccccHHHHHHHHHhC--CCCCeEEEEeecccC
Q 027749 177 KLLVLDESDEMLSRGFKDQIYDVYRYL--PPDLQVCCPGSCFLF 218 (219)
Q Consensus 177 ~~lVvDE~h~l~~~~~~~~~~~i~~~~--~~~~q~i~~SATl~~ 218 (219)
++||+||||+|.+++|...+..++..+ +++.|+++||||+|.
T Consensus 205 ~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~ 248 (434)
T 2db3_A 205 RFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE 248 (434)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCH
T ss_pred CeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCH
Confidence 999999999999999999999999985 678999999999985
No 10
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=7.4e-40 Score=266.85 Aligned_cols=187 Identities=36% Similarity=0.571 Sum_probs=168.2
Q ss_pred CCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEE
Q 027749 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~li 106 (219)
.....+|+++++++.++++|.++||..|+++|.++||.++.| +++++++|||+|||++|++|+++.+.....++++||
T Consensus 88 ~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~li 167 (300)
T 3fmo_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 167 (300)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEE
T ss_pred cCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEE
Confidence 335689999999999999999999999999999999999987 999999999999999999999999988777889999
Q ss_pred EcCCHHHHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc-CCCCCCCccEEEeccc
Q 027749 107 LSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDES 184 (219)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~-~~~~~~~l~~lVvDE~ 184 (219)
++||++|+.|+++.+..+.... ++.+....|+....... ..+++|+|+||++|.+++.+ +.++++++++||+|||
T Consensus 168 l~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEa 244 (300)
T 3fmo_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (300)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTH
T ss_pred EcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCH
Confidence 9999999999999999998764 67888888877654322 45789999999999999866 5677899999999999
Q ss_pred hhhhc-cccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 185 DEMLS-RGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 185 h~l~~-~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
|+|++ .+|...+..+++.+++++|+++||||+|.
T Consensus 245 d~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp HHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred HHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCH
Confidence 99998 68999999999999999999999999985
No 11
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2e-39 Score=258.06 Aligned_cols=188 Identities=29% Similarity=0.484 Sum_probs=173.0
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC---------Cc
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---------RE 101 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~---------~~ 101 (219)
++.+|+++++++.+.++|.+.|+..|+++|.++++.+++++++++++|||+|||++|++|++..+.... .+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 778999999999999999999999999999999999999999999999999999999999998875432 34
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEe
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVL 181 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVv 181 (219)
+++||++|+++|+.|+.+.+.++....++.+..+.|+.+...+...+..+++|+|+||++|.+.+......++++++||+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 68999999999999999999999888889999999999988888888889999999999999999888888899999999
Q ss_pred ccchhhhccccHHHHHHHHHh--CCC--CCeEEEEeecccC
Q 027749 182 DESDEMLSRGFKDQIYDVYRY--LPP--DLQVCCPGSCFLF 218 (219)
Q Consensus 182 DE~h~l~~~~~~~~~~~i~~~--~~~--~~q~i~~SATl~~ 218 (219)
||||++.+++|...+..+++. ++. +.|+++||||+|+
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~ 221 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPK 221 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCH
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCH
Confidence 999999999999999999995 444 7899999999975
No 12
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.4e-38 Score=246.71 Aligned_cols=191 Identities=32% Similarity=0.527 Sum_probs=170.1
Q ss_pred CCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEc
Q 027749 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (219)
+....+|+++++++.+.+++.++|+..|+++|.++++.+.+++++++++|||+|||++|+++++..+.....++++||++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 89 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC 89 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEEC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEe
Confidence 33446799999999999999999999999999999999999999999999999999999999999887766667899999
Q ss_pred CCHHHHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcC-CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchh
Q 027749 109 PTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (219)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~ 186 (219)
|+++|+.|+.+.++++.... ++++..+.|+.+...+...+.. .++|+|+||+++...+.+....++++++||+||||+
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 169 (220)
T 1t6n_A 90 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 169 (220)
T ss_dssp SCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHH
Confidence 99999999999999998765 7888888888887766665544 579999999999999988888889999999999999
Q ss_pred hhc-cccHHHHHHHHHhCCCCCeEEEEeecccCC
Q 027749 187 MLS-RGFKDQIYDVYRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 187 l~~-~~~~~~~~~i~~~~~~~~q~i~~SATl~~~ 219 (219)
+.+ .+|...+..+++.++++.|++++|||+|.+
T Consensus 170 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 170 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE 203 (220)
T ss_dssp HHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTT
T ss_pred HhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHH
Confidence 987 488899999999999999999999999864
No 13
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=250.47 Aligned_cols=189 Identities=28% Similarity=0.472 Sum_probs=169.0
Q ss_pred CCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC----CCceeE
Q 027749 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQA 104 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~----~~~~~~ 104 (219)
+++..+|+++++++.+.++|.++|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+... ..++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 4567889999999999999999999999999999999999999999999999999999999999877532 235789
Q ss_pred EEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcC-CCCCCCccEEEecc
Q 027749 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDE 183 (219)
Q Consensus 105 lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~-~~~~~~l~~lVvDE 183 (219)
||++|+++|+.|+.+.+.++....++.+..+.|+.+...+...+ .+++|+|+||+++.+.+... ...+.++++||+||
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999888888999999988877665555 57899999999999988764 46778999999999
Q ss_pred chhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 184 SDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 184 ~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
||++.+++|...+..+++.+++++|+++||||+|+
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTK 214 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCH
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCH
Confidence 99999999999999999999999999999999985
No 14
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.2e-39 Score=257.20 Aligned_cols=186 Identities=28% Similarity=0.496 Sum_probs=166.9
Q ss_pred CccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC----CceeEEE
Q 027749 33 TSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALI 106 (219)
Q Consensus 33 ~~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~----~~~~~li 106 (219)
.+|++++ +++.+++++.++|+..|+++|.++++.+..++++++++|||+|||++|++|+++.+.... .+.++||
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~li 131 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLI 131 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEE
Confidence 3456665 899999999999999999999999999999999999999999999999999998776422 3567999
Q ss_pred EcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcC-CCCCCCccEEEeccch
Q 027749 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESD 185 (219)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~-~~~~~~l~~lVvDE~h 185 (219)
++|+++|+.|+++.++++....+..+..+.|+.....+...+..+++|+|+||+++.+.+... ...++++++||+||||
T Consensus 132 l~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah 211 (262)
T 3ly5_A 132 LSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEAD 211 (262)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHH
T ss_pred EeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChH
Confidence 999999999999999999988889999999999988888888888999999999999987764 4678999999999999
Q ss_pred hhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 186 EMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 186 ~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
++.+++|...+..+++.+++.+|+++||||+|+
T Consensus 212 ~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~ 244 (262)
T 3ly5_A 212 RILDVGFEEELKQIIKLLPTRRQTMLFSATQTR 244 (262)
T ss_dssp HHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCH
T ss_pred HHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCH
Confidence 999999999999999999999999999999985
No 15
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=2.1e-38 Score=244.55 Aligned_cols=183 Identities=33% Similarity=0.535 Sum_probs=168.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC---CCceeEEEEcCC
Q 027749 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPT 110 (219)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~lil~P~ 110 (219)
+|+++++++.+.+++.+.|+..|+++|.++++.+.+++++++++|||+|||++|+++++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999987642 346789999999
Q ss_pred HHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
++|+.|+.+.+.++... +++..+.|+.+...+...+..+++|+|+||+++.+.+.++...++++++||+||||++.++
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999998765 6777888888887777777788999999999999999888888999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 191 GFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 191 ~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+|...+..+++.++++.|++++|||+|+
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPS 187 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCH
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCH
Confidence 9999999999999999999999999985
No 16
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=6e-38 Score=248.34 Aligned_cols=199 Identities=26% Similarity=0.483 Sum_probs=169.5
Q ss_pred cceeeccCCCCccCccccC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 20 KMVFETTEGVEAITSFDAM----GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~----~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
.+..+....+.++.+|+++ ++++.+++++.+.|+..|+++|.++++.+.+|+++++++|||+|||++|++|++..+
T Consensus 12 ~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 12 KIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp TEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 3445556678899999987 899999999999999999999999999999999999999999999999999999988
Q ss_pred cc-CCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHH-HHhcCCCeEEEeChHHHHHHHHcC--CC
Q 027749 96 DT-SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI-RKLEHGVHVVSGTPGRVCDMIKRK--TL 171 (219)
Q Consensus 96 ~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~I~v~Tp~~l~~~l~~~--~~ 171 (219)
.. ...++++||++|+++|+.|+.+.+.++....++.+..+.|+....... .....+++|+|+||+++..++.+. ..
T Consensus 92 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 171 (245)
T 3dkp_A 92 KQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI 171 (245)
T ss_dssp CSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSC
T ss_pred hhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCc
Confidence 64 334678999999999999999999999888888887776655433322 122457899999999999998876 46
Q ss_pred CCCCccEEEeccchhhhc---cccHHHHHHHHHhC-CCCCeEEEEeecccC
Q 027749 172 RTRAIKLLVLDESDEMLS---RGFKDQIYDVYRYL-PPDLQVCCPGSCFLF 218 (219)
Q Consensus 172 ~~~~l~~lVvDE~h~l~~---~~~~~~~~~i~~~~-~~~~q~i~~SATl~~ 218 (219)
.++++++||+||||++.+ .+|...+..++..+ +.+.|+++||||+|.
T Consensus 172 ~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 172 DLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAY 222 (245)
T ss_dssp CCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCH
T ss_pred ccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCH
Confidence 788999999999999998 46889999998776 457899999999985
No 17
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.7e-37 Score=261.03 Aligned_cols=199 Identities=65% Similarity=1.054 Sum_probs=183.4
Q ss_pred cceeeccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC
Q 027749 20 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS 99 (219)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~ 99 (219)
..+.+....++...+|+++++++.+.+++.++|+..|+|+|.++++.+++++++++++|||+|||++|++|+++.+....
T Consensus 24 ~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~ 103 (410)
T 2j0s_A 24 KVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV 103 (410)
T ss_dssp SCCCCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS
T ss_pred ccccCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc
Confidence 44455556667788999999999999999999999999999999999999999999999999999999999999887666
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEE
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~l 179 (219)
.++++||++|+++|+.|+.+.+.++....++.+..+.|+.....+...+..+++|+|+||+++.+++..+...+.++++|
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~v 183 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKML 183 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEE
Confidence 67789999999999999999999999888999999999999888888888889999999999999999888888999999
Q ss_pred EeccchhhhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 180 VLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 180 VvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
|+||+|++.+++|...+..+++.++++.|++++|||+|.
T Consensus 184 ViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 222 (410)
T 2j0s_A 184 VLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH 222 (410)
T ss_dssp EEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred EEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCH
Confidence 999999999999999999999999999999999999974
No 18
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=9e-37 Score=258.14 Aligned_cols=197 Identities=30% Similarity=0.459 Sum_probs=177.3
Q ss_pred eeeccCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC--
Q 027749 22 VFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-- 99 (219)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-- 99 (219)
+......|+++.+|+++++++.+.++|...|+..|+|+|.++++.+.+++++++++|||+|||++|++|++..+....
T Consensus 4 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 4 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp EEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred ccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 344455678889999999999999999999999999999999999999999999999999999999999998775432
Q ss_pred ----------------CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHH
Q 027749 100 ----------------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC 163 (219)
Q Consensus 100 ----------------~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~ 163 (219)
.++++||++|+++|+.|+++.+.++....++++..+.|+.+...+...+..+++|+|+||++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 163 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV 163 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHH
Confidence 2367999999999999999999999888889999999999988888888889999999999999
Q ss_pred HHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHh--CCC--CCeEEEEeecccC
Q 027749 164 DMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY--LPP--DLQVCCPGSCFLF 218 (219)
Q Consensus 164 ~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~--~~~--~~q~i~~SATl~~ 218 (219)
+.+....+.+.++++||+||+|++.+++|...+..++.. ++. ..|++++|||+|.
T Consensus 164 ~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~ 222 (417)
T 2i4i_A 164 DMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK 222 (417)
T ss_dssp HHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH
T ss_pred HHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH
Confidence 999888888899999999999999999999999999885 333 6899999999974
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=3.2e-35 Score=248.25 Aligned_cols=190 Identities=53% Similarity=0.896 Sum_probs=176.5
Q ss_pred CCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEc
Q 027749 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (219)
.+...+|+++++++.+.+.+.++|+..|+++|.++++.+.+|+++++++|||+|||++|++++++.+.....+.+++|++
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 115 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLA 115 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEe
Confidence 45668899999999999999999999999999999999999999999999999999999999999887766678899999
Q ss_pred CCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc-CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhh
Q 027749 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (219)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l 187 (219)
|+++|+.|+.+.+.++....+..+....|+.....+...+. .+++|+|+||++|.+.+..+...+.++++||+||||++
T Consensus 116 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~ 195 (414)
T 3eiq_A 116 PTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM 195 (414)
T ss_dssp SSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHH
T ss_pred ChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHh
Confidence 99999999999999999888899999999988877776665 67899999999999999888888899999999999999
Q ss_pred hccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 188 LSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
.++++...+..++..++++.|++++|||++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 226 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPS 226 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCH
Confidence 9999999999999999999999999999874
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.3e-35 Score=246.69 Aligned_cols=189 Identities=39% Similarity=0.651 Sum_probs=173.6
Q ss_pred CccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
....+|+++++++.+.++|.++|+..|+|+|.++++.+.+++++++++|||+|||++|++|++..+.....+.+++|++|
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 97 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 97 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcC
Confidence 44578999999999999999999999999999999999999999999999999999999999998876656778999999
Q ss_pred CHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
+++|+.|+.+.+.++....++.+....|+.....+...+..+++|+|+||++|.+.+......+.++++||+||+|++.+
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 177 (400)
T 1s2m_A 98 TRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLS 177 (400)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSS
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhh
Confidence 99999999999999998888999999999888877777778899999999999999988878889999999999999999
Q ss_pred cccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 190 RGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 190 ~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
.+|...+..++..+++..|++++|||+|.
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~lSAT~~~ 206 (400)
T 1s2m_A 178 RDFKTIIEQILSFLPPTHQSLLFSATFPL 206 (400)
T ss_dssp HHHHHHHHHHHTTSCSSCEEEEEESCCCH
T ss_pred hchHHHHHHHHHhCCcCceEEEEEecCCH
Confidence 88999999999999999999999999874
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.2e-34 Score=243.16 Aligned_cols=189 Identities=51% Similarity=0.850 Sum_probs=173.3
Q ss_pred CCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEc
Q 027749 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (219)
.+...+|+++++++.+.+++.++|+..|+|+|.++++.+.+++++++++|||+|||++|++|++..+.....++++||++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 35567899999999999999999999999999999999999999999999999999999999999888776778899999
Q ss_pred CCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhh
Q 027749 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~ 188 (219)
|+++|+.|+.+.+.++....++.+..+.|+.+.......+. +++|+|+||++|...+......+.++++||+||+|++.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 99999999999999998888899999999888766655443 68999999999999998888888999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 189 SRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
++++...+..++..+++..|++++|||+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 205 (394)
T 1fuu_A 176 SSGFKEQIYQIFTLLPPTTQVVLLSATMPN 205 (394)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEECSSCCH
T ss_pred CCCcHHHHHHHHHhCCCCceEEEEEEecCH
Confidence 999999999999999999999999999974
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.6e-34 Score=240.13 Aligned_cols=187 Identities=33% Similarity=0.556 Sum_probs=168.8
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHH
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 112 (219)
.+|+++++++.+.++|.++|+..|+|+|.++++.+.+++++++.+|||+|||++|+++++..+.....++++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999998877666778999999999
Q ss_pred HHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcC-CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~-~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
|+.|+.+.+.++.... ++++..+.|+.+.......+.. .++|+|+||+++...+.+....+.++++||+||||++.++
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999998765 7888888998887666655543 4799999999999999888888899999999999999884
Q ss_pred -ccHHHHHHHHHhCCCCCeEEEEeecccCC
Q 027749 191 -GFKDQIYDVYRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 191 -~~~~~~~~i~~~~~~~~q~i~~SATl~~~ 219 (219)
++...+..++...++..|++++|||++++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 197 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKE 197 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCST
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHH
Confidence 78888999999999999999999999863
No 23
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.8e-33 Score=235.73 Aligned_cols=184 Identities=40% Similarity=0.643 Sum_probs=165.3
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEc
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (219)
-..+|+++++++.+.+++.+.|+..|+|+|.++++.++++ +++++++|||+|||++|+++++..+.....++++||++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4578999999999999999999999999999999999988 89999999999999999999999888776778899999
Q ss_pred CCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhh
Q 027749 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 109 P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~ 188 (219)
|+++|+.|+.+.+.++....++.+....++...... ..+++|+|+||+++...+.+....+.++++||+||||++.
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 999999999999999988888888777766543221 3468999999999999998888889999999999999998
Q ss_pred c-cccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 189 S-RGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 189 ~-~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+ .++...+..+.+.++++.|++++|||+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 189 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFAD 189 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCH
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCH
Confidence 7 67889999999999999999999999874
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.6e-33 Score=237.47 Aligned_cols=190 Identities=36% Similarity=0.561 Sum_probs=166.4
Q ss_pred cCCCCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCcee
Q 027749 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ 103 (219)
Q Consensus 26 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~ 103 (219)
..+..+..+|+++++++.+.++|.++|+..|+|+|.++++.+.++ +++++++|||+|||++|++|++..+.....+++
T Consensus 18 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~ 97 (412)
T 3fht_A 18 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ 97 (412)
T ss_dssp TSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCC
T ss_pred CCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCC
Confidence 344567789999999999999999999999999999999999987 899999999999999999999999887777788
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc-CCCCCCCccEEEe
Q 027749 104 ALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVL 181 (219)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~-~~~~~~~l~~lVv 181 (219)
+||++|+++|+.|+.+.+.++.... +..+....++...... ...+++|+|+||+++.+.+.+ +.+.++++++||+
T Consensus 98 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 98 CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 9999999999999999999987754 5777777776654332 134679999999999998865 5567789999999
Q ss_pred ccchhhhc-cccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 182 DESDEMLS-RGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 182 DE~h~l~~-~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
||+|++.+ .++...+..+.+.++++.|++++|||++.
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~ 212 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 212 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCH
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCH
Confidence 99999987 68889999999999999999999999874
No 25
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=6.1e-33 Score=230.34 Aligned_cols=184 Identities=32% Similarity=0.553 Sum_probs=167.4
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC-CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
.+|+++++++.+.++|.+.|+..|+|+|.++++.++++ +++++.+|||+|||++|+++++..+... .+.+++|++|++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~ 84 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTR 84 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCH
Confidence 57999999999999999999999999999999999988 6999999999999999999998877653 456799999999
Q ss_pred HHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc
Q 027749 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (219)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~ 191 (219)
+|+.|+.+.+.++....++.+....|+.....+...+. +++|+|+||++|.+.+......+.++++||+||+|.+.+++
T Consensus 85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~ 163 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG 163 (367)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTT
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhc
Confidence 99999999999998887888888898888776655554 68999999999999998888888999999999999999999
Q ss_pred cHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 192 FKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 192 ~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+...+..++..++++.+++++|||+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~i~~SAT~~~ 190 (367)
T 1hv8_A 164 FIKDVEKILNACNKDKRILLFSATMPR 190 (367)
T ss_dssp THHHHHHHHHTSCSSCEEEEECSSCCH
T ss_pred hHHHHHHHHHhCCCCceEEEEeeccCH
Confidence 999999999999999999999999874
No 26
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=242.10 Aligned_cols=186 Identities=37% Similarity=0.571 Sum_probs=162.9
Q ss_pred CccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEE
Q 027749 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (219)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (219)
.+..+|+++++++.++++|.++||..|+|+|.++++.++.+ +++++++|||+|||++|++|++..+.....++++||+
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 34678999999999999999999999999999999999987 8999999999999999999999998877777889999
Q ss_pred cCCHHHHHHHHHHHHHhcccc-ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc-CCCCCCCccEEEeccch
Q 027749 108 SPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESD 185 (219)
Q Consensus 108 ~P~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~-~~~~~~~l~~lVvDE~h 185 (219)
+|+++|+.|+.+.+.++.... ++.+....++...... ...+++|+|+||++|.+++.+ +.+.++++++||+||+|
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah 245 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH
Confidence 999999999999999887653 5667767666554322 134679999999999998865 45677899999999999
Q ss_pred hhhc-cccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 186 EMLS-RGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 186 ~l~~-~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
++.+ .++...+..+.+.++.++|++++|||++.
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 279 (479)
T 3fmp_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED 279 (479)
T ss_dssp HHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH
T ss_pred HHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH
Confidence 9987 58889999999999999999999999974
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.2e-33 Score=246.27 Aligned_cols=189 Identities=27% Similarity=0.433 Sum_probs=160.1
Q ss_pred CccCccccCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--CCCcEEEEcCCCCchhHHhHHHHHhhhccCC----
Q 027749 30 EAITSFDAMG----IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---- 99 (219)
Q Consensus 30 ~~~~~~~~~~----l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~---- 99 (219)
....+|+++. +++.+++++.++|+..|+|+|.++++.++ .++++++++|||+|||++|++|+++.+....
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~ 93 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 93 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSST
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccccc
Confidence 3444566553 99999999999999999999999999999 7789999999999999999999998876542
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccc----cceeEEEEECCcccHHHHHHhc-CCCeEEEeChHHHHHHHHcC-CCCC
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDF----INIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK-TLRT 173 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~-~~~~I~v~Tp~~l~~~l~~~-~~~~ 173 (219)
.++++||++|+++|+.|+.+.+.++... ..+.+....|+.....+...+. .+++|+|+||++|.+.+... ...+
T Consensus 94 ~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~ 173 (579)
T 3sqw_A 94 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 173 (579)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccc
Confidence 3568999999999999999999987532 3467778888888777766664 47999999999999988764 3457
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCC-------CCCeEEEEeecccC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-------PDLQVCCPGSCFLF 218 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~-------~~~q~i~~SATl~~ 218 (219)
+.+++||+||||++.+++|...+..++..++ .++|+++||||+++
T Consensus 174 ~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 174 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD 225 (579)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred ccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh
Confidence 8899999999999999999999988887753 37799999999985
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.7e-32 Score=223.34 Aligned_cols=172 Identities=23% Similarity=0.458 Sum_probs=157.2
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHH
Q 027749 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (219)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~ 119 (219)
+++.+.++|.++|+..|+|+|.++++.+.+++++++.+|||+|||++|+++++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999999998774 4569999999999999999
Q ss_pred HHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHH
Q 027749 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (219)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i 199 (219)
.+.++....+..+..+.|+.....+...+. +++|+|+||++|.+.+......+.++++||+||+|++.++++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999998888889988999888776665554 4899999999999998887778889999999999999999999999999
Q ss_pred HHhCCCCCeEEEEeecccC
Q 027749 200 YRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 200 ~~~~~~~~q~i~~SATl~~ 218 (219)
+..++...+++++|||+|+
T Consensus 154 ~~~~~~~~~~~~~SAT~~~ 172 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPE 172 (337)
T ss_dssp HHHCTTCSEEEEEESCCCH
T ss_pred HhhCCcccEEEEEeCcCCH
Confidence 9999999999999999975
No 29
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-32 Score=239.77 Aligned_cols=186 Identities=27% Similarity=0.448 Sum_probs=157.0
Q ss_pred CccccCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHh--CCCcEEEEcCCCCchhHHhHHHHHhhhccCC----Cce
Q 027749 33 TSFDAMG----IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REV 102 (219)
Q Consensus 33 ~~~~~~~----l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~----~~~ 102 (219)
.+|+++. +++.+.+++.++|+..|+|+|.++++.++ .++++++++|||+|||++|++|+++.+.... .++
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 3455543 99999999999999999999999999999 6789999999999999999999999886543 246
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccc----cceeEEEEECCcccHHHHHHh-cCCCeEEEeChHHHHHHHHcC-CCCCCCc
Q 027749 103 QALILSPTRELATQTEKVILAIGDF----INIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRK-TLRTRAI 176 (219)
Q Consensus 103 ~~lil~P~~~l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l-~~~~~I~v~Tp~~l~~~l~~~-~~~~~~l 176 (219)
++||++|+++|+.|+.+.+.++... ....+..+.|+.....+...+ ..+++|+|+||++|.+++.+. ...++.+
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 8999999999999999999887432 245677788888877776666 458999999999999988754 3357889
Q ss_pred cEEEeccchhhhccccHHHHHHHHHhC-------CCCCeEEEEeecccC
Q 027749 177 KLLVLDESDEMLSRGFKDQIYDVYRYL-------PPDLQVCCPGSCFLF 218 (219)
Q Consensus 177 ~~lVvDE~h~l~~~~~~~~~~~i~~~~-------~~~~q~i~~SATl~~ 218 (219)
++||+||||++.+++|...+..++..+ +.++|+++||||+|+
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 276 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD 276 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH
Confidence 999999999999999999988887765 237899999999985
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.97 E-value=8.3e-31 Score=221.92 Aligned_cols=168 Identities=15% Similarity=0.217 Sum_probs=140.4
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 027749 43 DLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (219)
Q Consensus 43 ~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (219)
.+.+.+++ +++ .|+|+|.++++.+++|+++++++|||+|||++|+++++... ..++++||++|+++|+.|+.+.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHH
Confidence 34455554 355 89999999999999999999999999999999999988766 23567999999999999999999
Q ss_pred HHhccccceeEEEEECCccc---HHHHHHhcCC-CeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc--------
Q 027749 122 LAIGDFINIQAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-------- 189 (219)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~-~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~-------- 189 (219)
.+++. .++++..+.|+.+. ..+...+..+ ++|+|+||++|.+.+.. +.+.++++||+||||++.+
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhH
Confidence 99888 78899999999887 4555666555 99999999999887764 5567999999999987654
Q ss_pred ---cccHHH-HHHHHHhCC-----------CCCeEEEEeeccc
Q 027749 190 ---RGFKDQ-IYDVYRYLP-----------PDLQVCCPGSCFL 217 (219)
Q Consensus 190 ---~~~~~~-~~~i~~~~~-----------~~~q~i~~SATl~ 217 (219)
.+|... +..+++.++ .+.|++++|||++
T Consensus 162 l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~ 204 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAK 204 (414)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSS
T ss_pred HhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCC
Confidence 566666 778887766 7899999999943
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.97 E-value=5.7e-31 Score=228.65 Aligned_cols=186 Identities=31% Similarity=0.455 Sum_probs=138.3
Q ss_pred CCccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEE
Q 027749 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~li 106 (219)
+..+..|...++++.+.+.+.+.|+..|+++|.++++.+.++ +++++++|||+|||++|+++++..+.....++++||
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLv 194 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAIC 194 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEE
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEE
Confidence 344555666778999999999999999999999999999988 899999999999999999999999888777788999
Q ss_pred EcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchh
Q 027749 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (219)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~ 186 (219)
++|+++|+.|+.+.+.++....++.+....++..... ...+++|+|+||+++...+.++...+.++++||+||+|+
T Consensus 195 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~ 270 (508)
T 3fho_A 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 270 (508)
T ss_dssp ECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH
T ss_pred EECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh
Confidence 9999999999999999998776666655554443322 234789999999999999988888899999999999999
Q ss_pred hhc-cccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 187 MLS-RGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 187 l~~-~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+.+ .++...+..+.+.++++.|++++|||+++
T Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~ 303 (508)
T 3fho_A 271 MLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSE 303 (508)
T ss_dssp HTTC--CHHHHHHHHHHSCTTCEEEEEESCCST
T ss_pred hcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCH
Confidence 987 57899999999999999999999999985
No 32
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.97 E-value=5.8e-30 Score=230.62 Aligned_cols=179 Identities=15% Similarity=0.212 Sum_probs=156.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHH
Q 027749 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (219)
Q Consensus 34 ~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 112 (219)
+|+++++++.+.+.+.+.|+..|+|+|.++++. +.+++++++++|||+|||+++.+++++.+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 589999999999999999999999999999998 88999999999999999999999999877643 467999999999
Q ss_pred HHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcccc
Q 027749 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (219)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~ 192 (219)
|+.|+.+.++++.. .++++....|+...... ...+++|+|+||+++..++.+....++++++||+||+|.+.++++
T Consensus 80 La~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 99999999965543 47888888887655432 124689999999999998888776788999999999999998888
Q ss_pred HHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 193 KDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 193 ~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
...+..++..++++.|+|++|||++.
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n 181 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGN 181 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSC
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCC
Confidence 88999998888778999999999973
No 33
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.96 E-value=2e-29 Score=227.05 Aligned_cols=178 Identities=13% Similarity=0.186 Sum_probs=155.1
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
.+|+++++++.+.+.+.+.|+..|+|+|.++++. +.+++++++++|||+|||+++.+++++.+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 5799999999999999999999999999999999 78899999999999999999999999877643 45799999999
Q ss_pred HHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc
Q 027749 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (219)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~ 191 (219)
+|+.|+.+.++.+. ..++++....|+....... ..+++|+|+||++|..++.+....++++++||+||+|.+.+.+
T Consensus 86 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 86 ALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW---LKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG---GGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh---cCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 99999999996543 3478888888876654431 2368999999999999988877668899999999999998878
Q ss_pred cHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 192 FKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 192 ~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
+...+..++..++ +.|+|++|||++
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~ 186 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATIS 186 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCT
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCC
Confidence 8888888887776 789999999997
No 34
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.96 E-value=1.3e-29 Score=227.86 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=149.8
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 34 SFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 34 ~~~~~~--l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
+|++++ +++.+.+.+.++|+..|+|+|.++++.+.+++++++++|||+|||+++.+++++.+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 588888 9999999999999999999999999999999999999999999999999999987664 45799999999
Q ss_pred HHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc
Q 027749 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (219)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~ 191 (219)
+|+.|+.+.++.+. ..++++....|+...... ...+++|+|+||++|..++.+....++++++||+||+|.+.+++
T Consensus 79 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 99999999996543 347888888887765442 12478999999999999998877668899999999999999877
Q ss_pred cHHHHHHHHHhC---CCCCeEEEEeeccc
Q 027749 192 FKDQIYDVYRYL---PPDLQVCCPGSCFL 217 (219)
Q Consensus 192 ~~~~~~~i~~~~---~~~~q~i~~SATl~ 217 (219)
+...+..++..+ +++.|+|++|||++
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~ 183 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAP 183 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCT
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcC
Confidence 777766665554 57899999999997
No 35
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.96 E-value=2.2e-28 Score=213.58 Aligned_cols=166 Identities=14% Similarity=0.151 Sum_probs=133.9
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
+...|+|+|.++++.+++++++++++|||+|||++|++|+++.+..... ++++||++|+++|+.|+.+.+.++....+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 3458999999999999999999999999999999999999988866432 57799999999999999999999988888
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCC-CCCCccEEEeccchhhhccccHHHH-HHHHHh----C
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGFKDQI-YDVYRY----L 203 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~-~~~~l~~lVvDE~h~l~~~~~~~~~-~~i~~~----~ 203 (219)
+++..+.|+.+...++..+..+++|+|+||++|.+.+....+ .+.++++||+||||++.+++....+ ...+.. .
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhccc
Confidence 999999999887777677777899999999999999988777 7899999999999999887643333 233222 1
Q ss_pred CCCCeEEEEeeccc
Q 027749 204 PPDLQVCCPGSCFL 217 (219)
Q Consensus 204 ~~~~q~i~~SATl~ 217 (219)
++..|++++|||++
T Consensus 164 ~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 164 SQLPQILGLTASVG 177 (556)
T ss_dssp --CCEEEEEESCCC
T ss_pred CCCCeEEEEeCCcc
Confidence 45689999999985
No 36
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.2e-29 Score=232.64 Aligned_cols=172 Identities=16% Similarity=0.168 Sum_probs=151.0
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHH
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 112 (219)
..|..++++..+...+...+...|+|+|.++++.+.+|+++++++|||+|||++|.++++..+.. +.+++|++|+++
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~Ptra 238 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKA 238 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHH
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHH
Confidence 46777778777777777667778999999999999999999999999999999999999988744 457999999999
Q ss_pred HHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcccc
Q 027749 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (219)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~ 192 (219)
|+.|+++.+.++.. .+..+.|+.+. ..+++|+|+||++|.+++.+....++++++|||||||++.++++
T Consensus 239 La~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~r 307 (1108)
T 3l9o_A 239 LSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKER 307 (1108)
T ss_dssp HHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHH
T ss_pred HHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccch
Confidence 99999999998765 45556676663 34689999999999999988877788999999999999999999
Q ss_pred HHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 193 KDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 193 ~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
...+..++..++++.|+|+||||+|.
T Consensus 308 g~~~e~ii~~l~~~~qvl~lSATipn 333 (1108)
T 3l9o_A 308 GVVWEETIILLPDKVRYVFLSATIPN 333 (1108)
T ss_dssp HHHHHHHHHHSCTTSEEEEEECSCSS
T ss_pred HHHHHHHHHhcCCCceEEEEcCCCCC
Confidence 99999999999999999999999875
No 37
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.96 E-value=2.3e-28 Score=215.23 Aligned_cols=173 Identities=14% Similarity=0.179 Sum_probs=140.4
Q ss_pred cccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 35 FDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 35 ~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
++++++++.+.+.|++ +|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++.. ..++||++|+++|
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~~L 96 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLISL 96 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCHHH
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHHHH
Confidence 3458899999999997 79999999999999999999999999999999999999999763 3479999999999
Q ss_pred HHHHHHHHHHhccccceeEEEEECCcccHHHHHH------hcCCCeEEEeChHHHH------HHHHcCCCCCCCccEEEe
Q 027749 114 ATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK------LEHGVHVVSGTPGRVC------DMIKRKTLRTRAIKLLVL 181 (219)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~I~v~Tp~~l~------~~l~~~~~~~~~l~~lVv 181 (219)
+.|+.+.+.++ ++.+..+.|+.+..+.... ...+++|+|+||++|. +.+.. ...+.++.+|||
T Consensus 97 ~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iVi 171 (591)
T 2v1x_A 97 MEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAV 171 (591)
T ss_dssp HHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEE
T ss_pred HHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEE
Confidence 99999999887 6777778887776544322 2457899999999874 22222 334678999999
Q ss_pred ccchhhhccc--cHHHHHH--HHHhCCCCCeEEEEeecccC
Q 027749 182 DESDEMLSRG--FKDQIYD--VYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 182 DE~h~l~~~~--~~~~~~~--i~~~~~~~~q~i~~SATl~~ 218 (219)
||||++.+|+ |...+.. ++....++.|+++||||+++
T Consensus 172 DEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~ 212 (591)
T 2v1x_A 172 DEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATN 212 (591)
T ss_dssp ETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCH
T ss_pred ECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCH
Confidence 9999999987 6665543 34333457899999999875
No 38
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.96 E-value=4.4e-28 Score=211.33 Aligned_cols=164 Identities=15% Similarity=0.197 Sum_probs=140.1
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhccccceeE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFINIQA 132 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (219)
.|+|+|.++++.+++++++++++|||+|||++|++|+++.+..... ++++||++|+++|+.|+.+.+.++....++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 7999999999999999999999999999999999999988876532 56799999999999999999999988888999
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCC-CCCCccEEEeccchhhhccc-cHHHHHHHHHhC-----CC
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYL-----PP 205 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~-~~~~l~~lVvDE~h~l~~~~-~~~~~~~i~~~~-----~~ 205 (219)
..+.|+.+...++..+..+++|+|+||++|...+....+ .+.++++||+||||++.+.+ +...+...+... .+
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999999987777667777899999999999999988776 78899999999999998774 333333443332 24
Q ss_pred CCeEEEEeecccC
Q 027749 206 DLQVCCPGSCFLF 218 (219)
Q Consensus 206 ~~q~i~~SATl~~ 218 (219)
..|++++|||++.
T Consensus 164 ~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 164 LPQVVGLTASVGV 176 (555)
T ss_dssp CCEEEEEESCCCC
T ss_pred CCeEEEEecCccc
Confidence 6799999999853
No 39
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.96 E-value=3.8e-28 Score=226.15 Aligned_cols=161 Identities=15% Similarity=0.209 Sum_probs=139.0
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
..|+ .|+|+|.++++.+++|+++++++|||+|||++|+++++..+ ..++++||++||++|+.|+++.+.++. ..+
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~ 148 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLA-DEK 148 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTS-CTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhh-CCC
Confidence 4677 69999999999999999999999999999998888887776 335679999999999999999999977 668
Q ss_pred eeEEEEECCccc---HHHHHHhcCC-CeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhh----------c-cccHH
Q 027749 130 IQAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML----------S-RGFKD 194 (219)
Q Consensus 130 ~~~~~~~~~~~~---~~~~~~l~~~-~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~----------~-~~~~~ 194 (219)
+++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.++++++||+||||++. + ++|..
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~ 226 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPE 226 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCH
Confidence 899999999987 5566667665 99999999999887764 567899999999997655 4 77777
Q ss_pred H-HHHHHHhCC-----------CCCeEEEEeeccc
Q 027749 195 Q-IYDVYRYLP-----------PDLQVCCPGSCFL 217 (219)
Q Consensus 195 ~-~~~i~~~~~-----------~~~q~i~~SATl~ 217 (219)
. +..+++.++ ++.|+++||||+.
T Consensus 227 ~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~ 261 (1104)
T 4ddu_A 227 EIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAK 261 (1104)
T ss_dssp HHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSC
T ss_pred HHHHHHHHhcccchhhhhhccCCCceEEEEcCCCC
Confidence 7 888888877 7899999999954
No 40
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.95 E-value=6.1e-28 Score=216.53 Aligned_cols=173 Identities=16% Similarity=0.205 Sum_probs=140.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHH
Q 027749 45 LRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVIL 122 (219)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~ 122 (219)
..++..+|+..|+++|.++++.+++|+++++++|||+|||++|++++++.+..... +.++||++|+++|+.|+.+.+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999987765432 3679999999999999999999
Q ss_pred HhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCC-CCCCccEEEeccchhhhccc-cHHHHHHHH
Q 027749 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVY 200 (219)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~-~~~~l~~lVvDE~h~l~~~~-~~~~~~~i~ 200 (219)
++....++++..+.|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++.+.. +...+...+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l 162 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYL 162 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHHH
Confidence 9988778999999998876666666666899999999999999988766 68899999999999987653 333333333
Q ss_pred Hh-----CCCCCeEEEEeeccc
Q 027749 201 RY-----LPPDLQVCCPGSCFL 217 (219)
Q Consensus 201 ~~-----~~~~~q~i~~SATl~ 217 (219)
.. .++..+++++|||+.
T Consensus 163 ~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 163 DQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHTTCCSCCCEEEEEESCCC
T ss_pred HHhhcccCCCCCeEEEEeCccc
Confidence 32 246789999999986
No 41
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.95 E-value=6.4e-28 Score=186.55 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=120.9
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC---CCceeEEEEcCCHHHHHH-HHHHHHHhc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQ-TEKVILAIG 125 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~l~~q-~~~~~~~~~ 125 (219)
......|+++|.++++.+.+++++++++|||+|||++++.+++..+... ..+.+++|++|+++|+.| +.+.+.++.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 3345589999999999999999999999999999999999988766432 235679999999999999 777888776
Q ss_pred cccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC------CCCCCccEEEeccchhhhccccHHHH-HH
Q 027749 126 DFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT------LRTRAIKLLVLDESDEMLSRGFKDQI-YD 198 (219)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~------~~~~~l~~lVvDE~h~l~~~~~~~~~-~~ 198 (219)
.. ++.+..+.|+.........+..+++|+|+||+.|...+.... ..+.++++||+||||++.+.++...+ ..
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 677877887776655555555578999999999999887643 56788999999999999876555444 23
Q ss_pred HHHhC-------------CCCCeEEEEeec
Q 027749 199 VYRYL-------------PPDLQVCCPGSC 215 (219)
Q Consensus 199 i~~~~-------------~~~~q~i~~SAT 215 (219)
++... .+..++|++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 157899999998
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.95 E-value=2.7e-27 Score=215.32 Aligned_cols=168 Identities=15% Similarity=0.157 Sum_probs=135.9
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
-+|+..|+|+|.++++.+++|+++++++|||+|||++|++|+++.+..... ++++||++|+++|+.|+.+.+.++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 456789999999999999999999999999999999999999988876532 567999999999999999999999888
Q ss_pred cceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCC-CCCCccEEEeccchhhhcccc-HHHHHHHHHh---
Q 027749 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGF-KDQIYDVYRY--- 202 (219)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~-~~~~l~~lVvDE~h~l~~~~~-~~~~~~i~~~--- 202 (219)
.++++..++|+.+...+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++...+. ...+..++..
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 88999999999987777777777899999999999999988776 788999999999999887643 3333333332
Q ss_pred -CCCCCeEEEEeeccc
Q 027749 203 -LPPDLQVCCPGSCFL 217 (219)
Q Consensus 203 -~~~~~q~i~~SATl~ 217 (219)
..+..|++++|||++
T Consensus 403 ~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 403 SASQLPQILGLTASVG 418 (797)
T ss_dssp TCCCCCEEEEEESCCC
T ss_pred cCCCCCeEEEEcCCcc
Confidence 245689999999985
No 43
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=5.1e-28 Score=210.63 Aligned_cols=176 Identities=14% Similarity=0.193 Sum_probs=140.9
Q ss_pred cCccccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC
Q 027749 32 ITSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~ 110 (219)
+.+|+++++++.+.+.|++ +|+..|+|+|.++++.+++|+++++++|||+|||++|++|++.. ...+||++|+
T Consensus 1 ~~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~ 74 (523)
T 1oyw_A 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPL 74 (523)
T ss_dssp CCCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSC
T ss_pred CCChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECCh
Confidence 3679999999999999997 89999999999999999999999999999999999999998753 2469999999
Q ss_pred HHHHHHHHHHHHHhccccceeEEEEECCcccHHHHH---Hh-cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchh
Q 027749 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (219)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l-~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~ 186 (219)
++|+.|+.+.+..+ ++.+..+.++.+..+... .+ ...++|+|+||++|........+...++++|||||||+
T Consensus 75 ~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~ 150 (523)
T 1oyw_A 75 ISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHC 150 (523)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGG
T ss_pred HHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccc
Confidence 99999999999875 567777777766544322 22 34689999999998632111123347899999999999
Q ss_pred hhccc--cHHHHH---HHHHhCCCCCeEEEEeecccC
Q 027749 187 MLSRG--FKDQIY---DVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 187 l~~~~--~~~~~~---~i~~~~~~~~q~i~~SATl~~ 218 (219)
+.+|+ |...+. .+.+.+| +.+++++|||.++
T Consensus 151 i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~ 186 (523)
T 1oyw_A 151 ISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADD 186 (523)
T ss_dssp GCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCH
T ss_pred cCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCH
Confidence 99886 555443 4455554 6899999999874
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.94 E-value=6.2e-27 Score=217.73 Aligned_cols=162 Identities=18% Similarity=0.202 Sum_probs=137.6
Q ss_pred HHHH-HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 46 RGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 46 ~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
+.+. .+|+. | ++|.++++.+++|+++++++|||+|||+ |.+|++..+... ++++||++||++|+.|+.+.+.++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHH
Confidence 4444 57998 9 9999999999999999999999999997 888888877653 567999999999999999999999
Q ss_pred ccccce----eEEEEECCcccHHH---HHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHH
Q 027749 125 GDFINI----QAHACVGGKSVGED---IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (219)
Q Consensus 125 ~~~~~~----~~~~~~~~~~~~~~---~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~ 197 (219)
+...++ ++..++|+.+...+ ...+.+ ++|+|+||++|.+.+.+ ++++++||+||||+|+++ ...+.
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~--~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA--SKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS--THHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc--cccHH
Confidence 988787 88899999887663 344555 99999999999987655 668999999999999984 57777
Q ss_pred HHHHhC-----------CCCCeEEEEeecccCC
Q 027749 198 DVYRYL-----------PPDLQVCCPGSCFLFD 219 (219)
Q Consensus 198 ~i~~~~-----------~~~~q~i~~SATl~~~ 219 (219)
.++..+ +...|++++|||++++
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK 228 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc
Confidence 777776 3578999999999863
No 45
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.5e-26 Score=212.38 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=136.1
Q ss_pred HHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccc
Q 027749 49 YQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (219)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~ 128 (219)
..++| .|+++|.++++.+.+++++++++|||+|||++|.++++..+.. +.++||++|+++|++|+++.+.++..
T Consensus 81 ~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 81 RTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp CCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred HhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 34566 5999999999999999999999999999999999988877643 46799999999999999999988765
Q ss_pred ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCe
Q 027749 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q 208 (219)
.+..+.|+.+.. .+++|+|+||++|.+++.+....++++++|||||+|++.++++...+..++..++++.|
T Consensus 155 --~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~ 225 (1010)
T 2xgj_A 155 --DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 225 (1010)
T ss_dssp --CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCE
T ss_pred --CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCCe
Confidence 455567766543 35799999999999998887778899999999999999999888899999999999999
Q ss_pred EEEEeecccC
Q 027749 209 VCCPGSCFLF 218 (219)
Q Consensus 209 ~i~~SATl~~ 218 (219)
++++|||+|.
T Consensus 226 il~LSATi~n 235 (1010)
T 2xgj_A 226 YVFLSATIPN 235 (1010)
T ss_dssp EEEEECCCTT
T ss_pred EEEEcCCCCC
Confidence 9999999974
No 46
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.94 E-value=3.3e-26 Score=211.02 Aligned_cols=168 Identities=15% Similarity=0.175 Sum_probs=134.4
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
-.++..|+|+|.++++.+++|+++++++|||+|||++|++++++.+..... +.++||++|+++|+.|+.+.+.++...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 345778999999999999999999999999999999999999888776432 567999999999999999999999887
Q ss_pred cceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCC-CCCCccEEEeccchhhhccc-cHHHHHHHHHh---
Q 027749 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVYRY--- 202 (219)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~-~~~~l~~lVvDE~h~l~~~~-~~~~~~~i~~~--- 202 (219)
.++++..++|+.+...+...+..+++|+|+||++|.+.+....+ .+.++++||+||||++...+ +...+..++..
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 78999999999877665556666789999999999999987766 68889999999999988764 33333333333
Q ss_pred -CCCCCeEEEEeeccc
Q 027749 203 -LPPDLQVCCPGSCFL 217 (219)
Q Consensus 203 -~~~~~q~i~~SATl~ 217 (219)
..+..|++++|||.+
T Consensus 403 ~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 403 SASQLPQILGLTASVG 418 (936)
T ss_dssp TCSCCCEEEEEESCCC
T ss_pred cCCCcCeEEEecCCcc
Confidence 245689999999984
No 47
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.93 E-value=5.6e-26 Score=210.00 Aligned_cols=156 Identities=16% Similarity=0.206 Sum_probs=135.8
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
.++| .|+++|.++++.+.+|+++++++|||+|||++|++++...+.. +.++||++|+++|+.|+++.+.++.. +
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 3455 5899999999999999999999999999999999988776543 46799999999999999999988654 5
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeE
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~ 209 (219)
+++..+.|+.+.. ..++|+|+||+.|.+++......++++++|||||||++.++++...+..++..++++.|+
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 6777788877643 357999999999999988877778999999999999999999888999999999999999
Q ss_pred EEEeecccC
Q 027749 210 CCPGSCFLF 218 (219)
Q Consensus 210 i~~SATl~~ 218 (219)
|++|||+|.
T Consensus 182 IlLSAT~~n 190 (997)
T 4a4z_A 182 ILLSATVPN 190 (997)
T ss_dssp EEEECCCTT
T ss_pred EEEcCCCCC
Confidence 999999873
No 48
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=1.1e-25 Score=216.35 Aligned_cols=163 Identities=13% Similarity=0.211 Sum_probs=132.1
Q ss_pred CCCCChHHHHHHHHHHh-CCCcEEEEcCCCCchhHHhHHHHHhhhccC--------CCceeEEEEcCCHHHHHHHHHHHH
Q 027749 52 GFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTS--------SREVQALILSPTRELATQTEKVIL 122 (219)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~-~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~--------~~~~~~lil~P~~~l~~q~~~~~~ 122 (219)
||+.++++|.+++|.++ +++|++++||||+|||+++.+++++.+... ..+.++||++|+++|+.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78899999999999876 578999999999999999999999887542 235789999999999999999999
Q ss_pred HhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC--CCCCCccEEEeccchhhhccccHHHHHHH-
Q 027749 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGFKDQIYDV- 199 (219)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~--~~~~~l~~lVvDE~h~l~~~~~~~~~~~i- 199 (219)
+.....++++..+.|+.....+ ...+++|+|+|||++..++++.. ..++++++||+||+|.+.+ ..+..++.+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8888889999999988765432 12468999999999876665433 2368899999999997765 333333332
Q ss_pred ------HHhCCCCCeEEEEeecccC
Q 027749 200 ------YRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 200 ------~~~~~~~~q~i~~SATl~~ 218 (219)
.+..+++.|+|++|||+|+
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N 256 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPN 256 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTT
T ss_pred HHHHHHHHhCCCCCcEEEEecccCC
Confidence 3345778999999999984
No 49
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.93 E-value=3e-25 Score=213.47 Aligned_cols=174 Identities=18% Similarity=0.215 Sum_probs=139.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHhC-CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHH
Q 027749 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (219)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~ 118 (219)
+.+...+++...+|..++|+|.++++.+.. ++|++++||||+|||+++.+++++.+.... +.++||++|+++|+.|++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHH
Confidence 556777788777899999999999999875 578999999999999999999999887643 457999999999999999
Q ss_pred HHHHH-hccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCC--CCCCCccEEEeccchhhhccccHHH
Q 027749 119 KVILA-IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGFKDQ 195 (219)
Q Consensus 119 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~--~~~~~l~~lVvDE~h~l~~~~~~~~ 195 (219)
+.+.+ +....+.++..+.|+...+.. ...+++|+|+||+++..++++.. ..++++++||+||+|.+.+. .+..
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~ 1065 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPV 1065 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCcc
Confidence 99965 556678899888887665433 22458999999999988776533 34678999999999988764 2333
Q ss_pred -------HHHHHHhCCCCCeEEEEeecccC
Q 027749 196 -------IYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 196 -------~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+..+....+++.|+|++|||++.
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N 1095 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSN 1095 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTT
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCC
Confidence 33344456788999999999974
No 50
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=174.72 Aligned_cols=158 Identities=16% Similarity=0.158 Sum_probs=120.7
Q ss_pred CCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCC--ceeEEEEcCCHHHHHHHHHHHHHhcc-cc
Q 027749 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGD-FI 128 (219)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~l~~q~~~~~~~~~~-~~ 128 (219)
....++++|.++++.+.+|++++++||||+|||..+..+++........ ..+++++.|+++++.|+.+.+..... ..
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 3346799999999999999999999999999999888888876654433 45899999999999999988865543 22
Q ss_pred ceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhh-hccccH-HHHHHHHHhCCCC
Q 027749 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-LSRGFK-DQIYDVYRYLPPD 206 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l-~~~~~~-~~~~~i~~~~~~~ 206 (219)
+..+........ .....+++|+|+||+++.+.+.. .++++++||+||+|.+ .+.+|. ..+..++... ++
T Consensus 138 ~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~ 208 (235)
T 3llm_A 138 GKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PE 208 (235)
T ss_dssp TSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TT
T ss_pred CceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CC
Confidence 333332221111 11124688999999999998876 3789999999999985 666666 4566666665 47
Q ss_pred CeEEEEeecccC
Q 027749 207 LQVCCPGSCFLF 218 (219)
Q Consensus 207 ~q~i~~SATl~~ 218 (219)
.|+++||||++.
T Consensus 209 ~~~il~SAT~~~ 220 (235)
T 3llm_A 209 VRIVLMSATIDT 220 (235)
T ss_dssp SEEEEEECSSCC
T ss_pred CeEEEEecCCCH
Confidence 899999999986
No 51
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.92 E-value=1.2e-24 Score=185.98 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=132.4
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.|+|+|.++++.+.++ ++++.+|||+|||++++.+++..+. ..+.++||++|+++|+.|+.+++.++......++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 6899999999999988 9999999999999999999888766 234579999999999999999999987544557777
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEee
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGS 214 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 214 (219)
+.|+...... .....+++|+|+||+.|...+....+.+.++++||+||||++.+......+...+....+..+++++||
T Consensus 86 ~~g~~~~~~~-~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEER-SKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHH-HHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhh-hhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 7877765543 333346899999999999998887778899999999999998866445555566665567889999999
Q ss_pred ccc
Q 027749 215 CFL 217 (219)
Q Consensus 215 Tl~ 217 (219)
|.+
T Consensus 165 Tp~ 167 (494)
T 1wp9_A 165 SPG 167 (494)
T ss_dssp CSC
T ss_pred CCC
Confidence 986
No 52
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.92 E-value=4.8e-25 Score=196.89 Aligned_cols=160 Identities=19% Similarity=0.230 Sum_probs=136.1
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
..|+ .|+|+|..++|.+++|+ +.+++||+|||++|.+|++..... ++.++||+||++||.|..+.+..+....+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4799 99999999999999998 999999999999999999855443 35699999999999999999999999999
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHH-HHHHHcC------CCCCCCccEEEeccchhhh-ccc----------
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-SRG---------- 191 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~l~-~~~---------- 191 (219)
+++.+++|+.+...+ ....+++|+|+||++| .+++..+ .+.++.+.++|+||||.|+ +.+
T Consensus 153 l~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 999999999876543 3345799999999999 5655432 3567889999999999998 553
Q ss_pred -----cHHHHHHHHHhCC---------CCCeEE-----------------EEeeccc
Q 027749 192 -----FKDQIYDVYRYLP---------PDLQVC-----------------CPGSCFL 217 (219)
Q Consensus 192 -----~~~~~~~i~~~~~---------~~~q~i-----------------~~SATl~ 217 (219)
|...+..+++.++ +..|++ +||||.+
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~ 287 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHV 287 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGH
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccc
Confidence 7788999999997 467887 8999975
No 53
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.92 E-value=4.2e-25 Score=178.13 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=123.9
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.|+++|.++++.++++++.++++|||+|||.+++.++...+... ..++||++|+++|+.|+.+.+.++.......+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 79999999999988888899999999999999988777665432 3369999999999999999999997766677777
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEee
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGS 214 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 214 (219)
+.++..... ....+++|+|+||+.+... ....+.++++||+||||++.+ ..+..+++.+++..+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeC
Confidence 777765432 2235689999999876532 223467889999999999874 477788888878899999999
Q ss_pred cccC
Q 027749 215 CFLF 218 (219)
Q Consensus 215 Tl~~ 218 (219)
|++.
T Consensus 261 Tp~~ 264 (282)
T 1rif_A 261 SLRD 264 (282)
T ss_dssp SCCT
T ss_pred CCCC
Confidence 9975
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.92 E-value=8.1e-26 Score=202.83 Aligned_cols=163 Identities=13% Similarity=0.152 Sum_probs=127.0
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccC---CCceeEEEEcCCHHHHHHH-HHHHHHhccccce
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQT-EKVILAIGDFINI 130 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~l~~q~-~~~~~~~~~~~~~ 130 (219)
.|+|+|.++++.+++|+++++++|||+|||++|++|+++.+... ..+.++||++|+++|+.|+ .+.+.+++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 79999999999999999999999999999999999998877543 1235799999999999999 9999998765 58
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHH------HcCCCCCCCccEEEeccchhhhccc-cHHHHHHHHHh-
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI------KRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRY- 202 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l------~~~~~~~~~l~~lVvDE~h~l~~~~-~~~~~~~i~~~- 202 (219)
++..+.|+.........+..+++|+|+||+.|...+ ....+.+.++++|||||||++.... +...+...+..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 888888888777666666678999999999999887 3445677889999999999986543 22222222221
Q ss_pred ---C---------CCCCeEEEEeecccC
Q 027749 203 ---L---------PPDLQVCCPGSCFLF 218 (219)
Q Consensus 203 ---~---------~~~~q~i~~SATl~~ 218 (219)
. .+.++++++|||.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hcccccccccccCCCCCEEEEecccccc
Confidence 1 156799999999875
No 55
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.91 E-value=3.8e-24 Score=185.58 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=127.6
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEE
Q 027749 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (219)
..|+++|.++++.+++++++++++|||+|||++++.++...+... +.+++|++|+++|+.|+.+.+.++....+..+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~ 189 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEE
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceE
Confidence 379999999999999999999999999999999998888776543 347999999999999999999998766667788
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.|+.+...+ +..+++|+|+||+.+.. .....++++++|||||+|++.. ..+..+++.+++..++++||
T Consensus 190 ~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lS 259 (510)
T 2oca_A 190 KIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLS 259 (510)
T ss_dssp ECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEE
T ss_pred EEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEE
Confidence 88877766543 45678999999996543 2334567899999999999774 55777888888889999999
Q ss_pred ecccC
Q 027749 214 SCFLF 218 (219)
Q Consensus 214 ATl~~ 218 (219)
||.+.
T Consensus 260 ATp~~ 264 (510)
T 2oca_A 260 GSLRD 264 (510)
T ss_dssp SCGGG
T ss_pred eCCCC
Confidence 99864
No 56
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.91 E-value=7e-24 Score=191.14 Aligned_cols=163 Identities=19% Similarity=0.199 Sum_probs=128.5
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHhCC------CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHH
Q 027749 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (219)
Q Consensus 42 ~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~ 115 (219)
..+.+.+..++| .|+++|.++++.+.++ +++++++|||+|||++|+++++..+.. +.+++|++||++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 334445568888 8999999999998765 589999999999999999999987764 356999999999999
Q ss_pred HHHHHHHHhccccceeEEEEECCcccHHHH---HHhcC-CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccc
Q 027749 116 QTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (219)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~-~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~ 191 (219)
|+++.+.++....++++..++|+.+..++. ..+.. .++|+|+||+.|.+ ...+.++++||+||+|++...
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~- 505 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK- 505 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH-
Confidence 999999999988889999999988765543 33333 59999999987743 456889999999999985321
Q ss_pred cHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 192 FKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 192 ~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
....+.....++++++||||.++
T Consensus 506 ----qr~~l~~~~~~~~vL~mSATp~p 528 (780)
T 1gm5_A 506 ----QREALMNKGKMVDTLVMSATPIP 528 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCC
T ss_pred ----HHHHHHHhCCCCCEEEEeCCCCH
Confidence 12222333457899999999764
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.91 E-value=1.1e-23 Score=188.25 Aligned_cols=160 Identities=16% Similarity=0.208 Sum_probs=136.9
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
..|+ .|+++|..++|.+++|+ +.+++||+|||++|.+|++..... +..++||+||++||.|..+.+..+....+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 4687 99999999999999997 999999999999999999765543 34599999999999999999999999999
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHH-HHHHHcC------CCCCCCccEEEeccchhhh-c------------
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-S------------ 189 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~l~-~------------ 189 (219)
+++.+++|+.+...+ ....+|+|+|+||++| .+++..+ .+.++.+.++||||||.|+ +
T Consensus 181 Lsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 181 LQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp CCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred CeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 999999999875443 3344799999999999 6766543 3567889999999999998 3
Q ss_pred ---cccHHHHHHHHHhCC---------CCCeEE-----------------EEeeccc
Q 027749 190 ---RGFKDQIYDVYRYLP---------PDLQVC-----------------CPGSCFL 217 (219)
Q Consensus 190 ---~~~~~~~~~i~~~~~---------~~~q~i-----------------~~SATl~ 217 (219)
.+|...+..++..++ +..|++ ++|||.+
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~ 315 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANS 315 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTC
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcch
Confidence 257889999999998 678998 8999976
No 58
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.90 E-value=7.5e-24 Score=188.90 Aligned_cols=147 Identities=16% Similarity=0.229 Sum_probs=113.3
Q ss_pred CCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.|. .|+++|..+++.+++|+ +.+++||+|||++|.+|++..... +++++|++||++||.|..+.+..+....++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 454 89999999999999997 999999999999999999865543 456999999999999999999999999999
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHH-HHHHHcC------CCCCCCccEEEeccchhhh-cc------------
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-SR------------ 190 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l-~~~l~~~------~~~~~~l~~lVvDE~h~l~-~~------------ 190 (219)
++.+++|+.+... +.+..+++|+|+||++| .+++..+ ....+++.++|+||||.|+ +.
T Consensus 145 ~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 9999999987643 34445799999999999 6777644 2567899999999999998 43
Q ss_pred ---ccHHHHHHHHHhCCC
Q 027749 191 ---GFKDQIYDVYRYLPP 205 (219)
Q Consensus 191 ---~~~~~~~~i~~~~~~ 205 (219)
+|...+..++..+++
T Consensus 223 ~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp ------------------
T ss_pred cchhHHHHHHHHHHhchh
Confidence 356778888888864
No 59
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.89 E-value=4.4e-22 Score=186.43 Aligned_cols=167 Identities=15% Similarity=0.180 Sum_probs=131.1
Q ss_pred CCCCHHHHHHHH-HCCCCCChHHHHHHHHHHhC----CC--cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC
Q 027749 38 MGIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIK----GR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (219)
Q Consensus 38 ~~l~~~~~~~l~-~~~~~~~~~~Q~~~~~~~~~----~~--~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~ 110 (219)
++.+....+.+. .+++ .++|+|.++++.++. ++ +++++++||+|||++++.+++..+.. +.+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEech
Confidence 455666666665 5566 579999999999875 65 89999999999999999888776543 4579999999
Q ss_pred HHHHHHHHHHHHHhccccceeEEEEECCcccHHH---HHHhcC-CCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchh
Q 027749 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKLEH-GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (219)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~-~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~ 186 (219)
++|+.|+++.+.+.....++++..+.+..+..+. ...+.. .++|+|+||+.+. +.+.++++++|||||+|+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHh
Confidence 9999999999998888778888888766554433 233434 5999999997552 456788999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 187 MLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 187 l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
+ ......+++.++.+.++++||||.++
T Consensus 737 ~-----g~~~~~~l~~l~~~~~vl~lSATp~p 763 (1151)
T 2eyq_A 737 F-----GVRHKERIKAMRANVDILTLTATPIP 763 (1151)
T ss_dssp S-----CHHHHHHHHHHHTTSEEEEEESSCCC
T ss_pred c-----ChHHHHHHHHhcCCCCEEEEcCCCCh
Confidence 4 23455666667778999999999764
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.87 E-value=1.1e-22 Score=174.23 Aligned_cols=152 Identities=14% Similarity=0.066 Sum_probs=111.6
Q ss_pred CCCCChHHHHHHHHHHhCCCcE-EEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 52 GFEKPSAIQQRAVMPIIKGRDV-IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~-lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
|+..|+|+|. ++|.++++++. ++++|||+|||++|++|++..+... +++++|++||++|+.|+.+.+. +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 6778999985 79999988877 9999999999999999998876653 4679999999999999999874 22
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHh-CCCCCeE
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY-LPPDLQV 209 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~-~~~~~q~ 209 (219)
.+....+.... ....+..|.++|++.+...+.+. ..++++++||+||+|++ +..+...+..+... .++++|+
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 22221111110 11234578899999998876654 45789999999999976 44433333333222 3557999
Q ss_pred EEEeecccCC
Q 027749 210 CCPGSCFLFD 219 (219)
Q Consensus 210 i~~SATl~~~ 219 (219)
++||||+|.+
T Consensus 145 i~~SAT~~~~ 154 (451)
T 2jlq_A 145 IFMTATPPGS 154 (451)
T ss_dssp EEECSSCTTC
T ss_pred EEEccCCCcc
Confidence 9999999863
No 61
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.87 E-value=4.1e-21 Score=151.09 Aligned_cols=137 Identities=15% Similarity=0.108 Sum_probs=108.5
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccccee-EE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~-~~ 133 (219)
.|+++|.++++.+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++ ++. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 6899999999999999899999999999999988776553 346999999999999999999874 455 55
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.|+.. ...+|+|+|++.+....... ..++++||+||+|++.+..+. .+++.++ ..+++++|
T Consensus 163 ~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LS 225 (237)
T 2fz4_A 163 EFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLT 225 (237)
T ss_dssp EESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEE
T ss_pred EEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEe
Confidence 5555543 25789999999987655421 246899999999998876543 3555554 67899999
Q ss_pred ecccC
Q 027749 214 SCFLF 218 (219)
Q Consensus 214 ATl~~ 218 (219)
||.+.
T Consensus 226 ATp~r 230 (237)
T 2fz4_A 226 ATFER 230 (237)
T ss_dssp ESCC-
T ss_pred cCCCC
Confidence 99875
No 62
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.87 E-value=2.9e-21 Score=165.99 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=111.7
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccccee-EE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~-~~ 133 (219)
.|+|+|.++++.+.+++++++++|||+|||++++.++... +.++||++|+++|+.|+.+++.++ +++ +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 6899999999999999999999999999999999887764 346999999999999999999884 566 66
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+.|+.+. .++|+|+||+.+...+... .+++++|||||+|++.+..|.. +++.+ +..+++++|
T Consensus 163 ~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAPFRLGLT 225 (472)
T ss_dssp EBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTC-CCSEEEEEE
T ss_pred EECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhc-CCCeEEEEe
Confidence 66666542 4789999999988765421 2468999999999999887654 45555 367899999
Q ss_pred eccc
Q 027749 214 SCFL 217 (219)
Q Consensus 214 ATl~ 217 (219)
||.+
T Consensus 226 ATp~ 229 (472)
T 2fwr_A 226 ATFE 229 (472)
T ss_dssp SCCC
T ss_pred cCcc
Confidence 9986
No 63
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.86 E-value=5.7e-23 Score=181.66 Aligned_cols=166 Identities=16% Similarity=0.056 Sum_probs=121.0
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHH
Q 027749 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (219)
Q Consensus 38 ~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~ 117 (219)
+++++.+.+++... ...++|+|+.+++.+.+++++++++|||+|||++|++|+++.+... ++++||++||++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 45666666666543 4678888888899999999999999999999999999999887653 46799999999999999
Q ss_pred HHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHH
Q 027749 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (219)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~ 197 (219)
.+.+.. ..+.. .+.. .. ..-..+..+.++|.+.+...+... ..++++++||+||||++ +.++...+.
T Consensus 232 ~~~l~~------~~v~~-~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALRG------LPIRY-QTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTTT------SCEEE-CCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhcC------CceeE-eccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 988762 22221 1111 00 001123457788888887755544 35789999999999997 677788888
Q ss_pred HHHHhCC-CCCeEEEEeecccCC
Q 027749 198 DVYRYLP-PDLQVCCPGSCFLFD 219 (219)
Q Consensus 198 ~i~~~~~-~~~q~i~~SATl~~~ 219 (219)
.+++.++ ++.|+++||||++.+
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGS 321 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTC
T ss_pred HHHHHhcccCccEEEEECCCchh
Confidence 8887775 689999999999863
No 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.86 E-value=3.7e-22 Score=176.19 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=115.3
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.++++|..+++.+..++++++++|||+|||.+|.+++++. +.+++|++|+++|+.|+.+.+.+.. +..+..
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~ 287 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNI 287 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEE
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeE
Confidence 4455566666666788899999999999999999988762 4479999999999999998876554 344555
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCe--EEEE
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ--VCCP 212 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q--~i~~ 212 (219)
.+|+.. ...+++|+|+||++| +....+.++++++||+||+| +++.+|...+..+++.++...| ++++
T Consensus 288 ~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp ECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceEEEE
Confidence 566644 345789999999997 45667788899999999996 4667888889999999987777 7888
Q ss_pred eecccC
Q 027749 213 GSCFLF 218 (219)
Q Consensus 213 SATl~~ 218 (219)
|||++.
T Consensus 357 SAT~~~ 362 (666)
T 3o8b_A 357 TATPPG 362 (666)
T ss_dssp ESSCTT
T ss_pred CCCCCc
Confidence 999985
No 65
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.84 E-value=2.3e-20 Score=168.83 Aligned_cols=178 Identities=14% Similarity=0.127 Sum_probs=126.9
Q ss_pred CccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhC-CCcEEEEcCCCCchhHHhHHHHH--hhhccCCCceeEEE
Q 027749 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVC--QTVDTSSREVQALI 106 (219)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~lv~~~tG~GKT~~~~~~~~--~~~~~~~~~~~~li 106 (219)
.++.+|+++++++.+.+.+...+ ..|++.|+.+++.++. +++++++||||+|||+ ++|++ ........+.++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEe
Confidence 45678999999999999999887 6899999999988764 5679999999999997 34443 22222222567999
Q ss_pred EcCCHHHHHHHHHHHHHhc-cccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccch
Q 027749 107 LSPTRELATQTEKVILAIG-DFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (219)
Q Consensus 107 l~P~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h 185 (219)
++|+++++.|+.+.+.+.. ...+..+........ ....+.+|+|+||+.+.+.+... ..+.++++||+||+|
T Consensus 146 l~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah 218 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAH 218 (773)
T ss_dssp EESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGG
T ss_pred cCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcc
Confidence 9999999999998775543 222222221111111 11246789999999999877654 358899999999999
Q ss_pred h-hhccc-cHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 186 E-MLSRG-FKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 186 ~-l~~~~-~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
. .++.. +...+..+.... ++.|++++|||++.
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~ 252 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA 252 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC
T ss_pred ccccchHHHHHHHHHHHHhC-CCceEEEEeccccH
Confidence 6 55433 234444555444 57899999999864
No 66
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.83 E-value=3.6e-20 Score=165.64 Aligned_cols=132 Identities=19% Similarity=0.228 Sum_probs=113.3
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
..|+ .|+++|..++|.+++|+ +.++.||+|||++|.+|++..... +.+++|++||++||.|.++.+..+....+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~lG 148 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGLG 148 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTTT
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 4688 99999999999999998 999999999999999999654443 34599999999999999999999999999
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHH-HHHHHcC------CCCCC---CccEEEeccchhhhc
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTR---AIKLLVLDESDEMLS 189 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l-~~~l~~~------~~~~~---~l~~lVvDE~h~l~~ 189 (219)
+++.+++|+.+... +....+++|+|+||+.| .+++..+ .+.++ .+.++|+||+|.|+.
T Consensus 149 Lsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLi 216 (997)
T 2ipc_A 149 LSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILI 216 (997)
T ss_dssp CCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTT
T ss_pred CeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHH
Confidence 99999999987543 33445799999999999 7777654 24567 899999999999873
No 67
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.82 E-value=5.8e-20 Score=169.74 Aligned_cols=153 Identities=12% Similarity=0.086 Sum_probs=117.2
Q ss_pred CChHHHHHHHHHHhC--------------CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHH
Q 027749 55 KPSAIQQRAVMPIIK--------------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~--------------~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~ 120 (219)
.|+|+|..+++.++. +++.+++++||+|||+++ ++++..+.......++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998764 368999999999999987 55666555444456899999999999999999
Q ss_pred HHHhccccceeEEEEECCcccHHHHHHhc-CCCeEEEeChHHHHHHHHcCC--CCCCCccEEEeccchhhhccccHHHHH
Q 027749 121 ILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGFKDQIY 197 (219)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~I~v~Tp~~l~~~l~~~~--~~~~~l~~lVvDE~h~l~~~~~~~~~~ 197 (219)
+..+... .+.++.+.......+. .+.+|+|+||++|...+.... ..++...+||+||||++.. .....
T Consensus 350 f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~ 420 (1038)
T 2w00_A 350 YQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQK 420 (1038)
T ss_dssp HHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHH
T ss_pred HHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHH
Confidence 9887643 1234455555555553 578999999999999876532 2355778999999999763 34456
Q ss_pred HHHHhCCCCCeEEEEeecccC
Q 027749 198 DVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 198 ~i~~~~~~~~q~i~~SATl~~ 218 (219)
.+.+.+| +.++++||||...
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCC
T ss_pred HHHHhCC-cccEEEEeCCccc
Confidence 6777776 4799999999863
No 68
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.82 E-value=1.5e-20 Score=165.86 Aligned_cols=148 Identities=20% Similarity=0.263 Sum_probs=90.1
Q ss_pred CChHHHHHHHHHHhC----C-CcEEEEcCCCCchhHHhHHHHHhhhccCC-------CceeEEEEcCCHHHHHHHH-HHH
Q 027749 55 KPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTSS-------REVQALILSPTRELATQTE-KVI 121 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~-~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-------~~~~~lil~P~~~l~~q~~-~~~ 121 (219)
.|+++|.++++.+.. + ++++++++||+|||++++..+ ..+.... ..+++|||+|+++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~-~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS-WKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH-HHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 699999999998764 4 568999999999998865544 4443333 5678999999999999998 666
Q ss_pred HHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHc----CCCCCCCccEEEeccchhhhccccHHHHH
Q 027749 122 LAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR----KTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (219)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~----~~~~~~~l~~lVvDE~h~l~~~~~~~~~~ 197 (219)
..+.. .+..+.++ ....+.+|+|+||++|...... ..+....+++||+||||++.... ...+.
T Consensus 257 ~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 65532 22222221 2335689999999999887642 23456779999999999987543 35667
Q ss_pred HHHHhCCCCCeEEEEeeccc
Q 027749 198 DVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 198 ~i~~~~~~~~q~i~~SATl~ 217 (219)
.+++.++ ..++++||||..
T Consensus 324 ~il~~~~-~~~~l~lTATP~ 342 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPL 342 (590)
T ss_dssp HHHHHST-TSEEEEEESSCS
T ss_pred HHHHhCC-cceEEEeccccc
Confidence 7777776 468999999965
No 69
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.81 E-value=1e-20 Score=168.49 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=106.7
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHHh------CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC
Q 027749 47 GIYQYGFE-----KPSAIQQ-----RAVMPII------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (219)
Q Consensus 47 ~l~~~~~~-----~~~~~Q~-----~~~~~~~------~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~ 110 (219)
++...||. .|+++|+ +++|.++ +++++++++|||+|||++|++++++.+... +++++|++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccH
Confidence 34445555 8999999 9999887 899999999999999999999999876653 4679999999
Q ss_pred HHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhcc
Q 027749 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (219)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~ 190 (219)
++|+.|+++.+..+. +. ...+.... .-..+.-+-+.+.+.+...+.+. ..++++++||+||+|++ +.
T Consensus 280 r~La~Q~~~~l~~~~----i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~ 346 (673)
T 2wv9_A 280 RVVAAEMAEALRGLP----VR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DP 346 (673)
T ss_dssp HHHHHHHHHHTTTSC----CE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CH
T ss_pred HHHHHHHHHHHhcCC----ee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-Cc
Confidence 999999999887542 21 11110000 00011223445555555544443 56889999999999997 33
Q ss_pred ccHHHHHHHHHhCC-CCCeEEEEeecccCC
Q 027749 191 GFKDQIYDVYRYLP-PDLQVCCPGSCFLFD 219 (219)
Q Consensus 191 ~~~~~~~~i~~~~~-~~~q~i~~SATl~~~ 219 (219)
.+...+..+.+.++ ++.|+++||||++++
T Consensus 347 ~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~ 376 (673)
T 2wv9_A 347 ASIAARGYIATRVEAGEAAAIFMTATPPGT 376 (673)
T ss_dssp HHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred cHHHHHHHHHHhccccCCcEEEEcCCCChh
Confidence 33344444444443 678999999999863
No 70
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.81 E-value=1.4e-19 Score=154.02 Aligned_cols=135 Identities=13% Similarity=0.051 Sum_probs=95.2
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (219)
+|+++++++|||+|||++|++++++.+... +.+++|++||++|+.|+++.+. ++.+....|.... .-
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cC
Confidence 478999999999999999999999666544 4579999999999999988775 3344443333211 11
Q ss_pred cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC-CCCCeEEEEeecccC
Q 027749 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVCCPGSCFLF 218 (219)
Q Consensus 149 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~-~~~~q~i~~SATl~~ 218 (219)
..+..+.+.|.+.+...+.+ ...++++++||+||+|++ +.++......+.+.. ++++|+++||||+++
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~ 136 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPG 136 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTT
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCc
Confidence 12345667788888776655 456889999999999997 444444444444332 568999999999986
No 71
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.80 E-value=2.8e-21 Score=164.91 Aligned_cols=131 Identities=14% Similarity=0.147 Sum_probs=91.4
Q ss_pred HHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHH
Q 027749 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (219)
Q Consensus 66 ~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (219)
.+.+|+++++++|||+|||++|++|+++.+... +++++|++||++|+.|+++.+..+ ++. ...+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~----~v~--~~~~~~~----- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL----DVK--FHTQAFS----- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS----CEE--EESSCCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC----CeE--Eecccce-----
Confidence 356889999999999999999999999877654 467999999999999999988743 222 1111100
Q ss_pred HHhcCCCeEEEeChHHHHHHH--------HcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC-CCCCeEEEEeecc
Q 027749 146 RKLEHGVHVVSGTPGRVCDMI--------KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVCCPGSCF 216 (219)
Q Consensus 146 ~~l~~~~~I~v~Tp~~l~~~l--------~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~-~~~~q~i~~SATl 216 (219)
.++||+++.+++ ......++++++||+||+|++ +.++...+..+.+.. +.+.|+++||||+
T Consensus 71 ---------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~ 140 (440)
T 1yks_A 71 ---------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATP 140 (440)
T ss_dssp ---------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred ---------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCC
Confidence 255554443211 122345789999999999998 444444433333333 3579999999999
Q ss_pred cCC
Q 027749 217 LFD 219 (219)
Q Consensus 217 ~~~ 219 (219)
++.
T Consensus 141 ~~~ 143 (440)
T 1yks_A 141 PGT 143 (440)
T ss_dssp TTC
T ss_pred Cch
Confidence 763
No 72
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.79 E-value=2.1e-19 Score=154.05 Aligned_cols=136 Identities=14% Similarity=0.123 Sum_probs=94.5
Q ss_pred HHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHH
Q 027749 65 MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED 144 (219)
Q Consensus 65 ~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (219)
..+.+++++++++|||+|||++|++|++..+... ++++||++|+++|+.|+.+.+. +..+....+....
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~--- 84 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR--- 84 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT------TSCEEECC--------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc---
Confidence 3456788999999999999999999999877653 4679999999999999999886 2222221111110
Q ss_pred HHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchh-----hhccccHHHHHHHHHhCCCCCeEEEEeecccCC
Q 027749 145 IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-----MLSRGFKDQIYDVYRYLPPDLQVCCPGSCFLFD 219 (219)
Q Consensus 145 ~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~-----l~~~~~~~~~~~i~~~~~~~~q~i~~SATl~~~ 219 (219)
.-..+..+.++|.+.+...+... ..++++++||+||||. +...++..... .+++.|+++||||+|.+
T Consensus 85 --~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~~ 156 (459)
T 2z83_A 85 --EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPGT 156 (459)
T ss_dssp -----CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTTC
T ss_pred --CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCcc
Confidence 01123457788888887765544 4578999999999998 33333322221 13678999999999863
No 73
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.75 E-value=9.4e-18 Score=146.89 Aligned_cols=129 Identities=18% Similarity=0.056 Sum_probs=100.8
Q ss_pred CChHHHHHHHHH----HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 55 KPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 55 ~~~~~Q~~~~~~----~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.|+|.|.+++.. +..|+++++++|||+|||++|++|++. .+++++|++||++|+.|+.+.+..+.+..++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 689999997764 457899999999999999999999988 2567999999999999999999888777677
Q ss_pred eEEEEECCccc---------------------------------HHH------------------HHHhcCCCeEEEeCh
Q 027749 131 QAHACVGGKSV---------------------------------GED------------------IRKLEHGVHVVSGTP 159 (219)
Q Consensus 131 ~~~~~~~~~~~---------------------------------~~~------------------~~~l~~~~~I~v~Tp 159 (219)
++..+.|..+. ... .+....+++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 77777664321 011 122334689999999
Q ss_pred HHHHHHHHcCCCCC-CCccEEEeccchhhhc
Q 027749 160 GRVCDMIKRKTLRT-RAIKLLVLDESDEMLS 189 (219)
Q Consensus 160 ~~l~~~l~~~~~~~-~~l~~lVvDE~h~l~~ 189 (219)
+.|++......+.+ ....++||||||+|.+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99988544333322 4667899999999987
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.70 E-value=5.6e-17 Score=140.20 Aligned_cols=149 Identities=12% Similarity=0.113 Sum_probs=107.0
Q ss_pred CCChHHHHHHHHHH----hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 54 EKPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~----~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
..++|+|.++++.+ ..+++.++..+||+|||+.++..+ ..+.......++|||+| ..++.|+.+++.++...
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i-~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~-- 111 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVF-SDAKKENELTPSLVICP-LSVLKNWEEELSKFAPH-- 111 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHH-HHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTT--
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHH-HHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCC--
Confidence 36899999998766 467899999999999998876544 43433333456999999 56889999999998753
Q ss_pred eeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeE
Q 027749 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~ 209 (219)
.++..+.|+... ....+++|+|+|++.+..... +.....++||+||||++.+.+ ......+..++ ..+.
T Consensus 112 ~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~ 180 (500)
T 1z63_A 112 LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYR 180 (500)
T ss_dssp SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEE
T ss_pred ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcE
Confidence 455555554422 122467999999998875432 223467899999999987654 33445555564 4578
Q ss_pred EEEeeccc
Q 027749 210 CCPGSCFL 217 (219)
Q Consensus 210 i~~SATl~ 217 (219)
+++|||..
T Consensus 181 l~LTaTP~ 188 (500)
T 1z63_A 181 IALTGTPI 188 (500)
T ss_dssp EEECSSCS
T ss_pred EEEecCCC
Confidence 99999963
No 75
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.69 E-value=7.1e-17 Score=143.63 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=99.6
Q ss_pred HHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHH
Q 027749 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (219)
Q Consensus 66 ~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (219)
..+++++++++||||+|||. +++..+.... ..+|++|+++||.|+++.+.+. ++.+..+.|+......
T Consensus 151 r~l~rk~vlv~apTGSGKT~----~al~~l~~~~---~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~- 218 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTY----HAIQKYFSAK---SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ- 218 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHH----HHHHHHHHSS---SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS-
T ss_pred HhcCCCEEEEEcCCCCCHHH----HHHHHHHhcC---CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec-
Confidence 34578899999999999997 3334333332 2599999999999999999876 5677777777664110
Q ss_pred HHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCC-CCCeEEEEeeccc
Q 027749 146 RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVCCPGSCFL 217 (219)
Q Consensus 146 ~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~-~~~q~i~~SATl~ 217 (219)
.-....+++++|++.+. ....+++||+||+|++.+.++...+..++..++ ++.+++++|||.+
T Consensus 219 -TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~ 282 (677)
T 3rc3_A 219 -PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID 282 (677)
T ss_dssp -TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH
T ss_pred -CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH
Confidence 00113678888875432 246789999999999999999999999999988 6889999999964
No 76
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.65 E-value=1.8e-16 Score=138.46 Aligned_cols=128 Identities=17% Similarity=0.199 Sum_probs=86.2
Q ss_pred CCCCCChHHHHHHHHH----HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 027749 51 YGFEKPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (219)
Q Consensus 51 ~~~~~~~~~Q~~~~~~----~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (219)
.|+ .|+|+|.+++.. +..|+++++++|||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l-- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL-- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG--
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc--
Confidence 356 799999998654 4688999999999999999999998764 467999999999999999888764
Q ss_pred ccceeEEEEECCcc--------cH---------------------------------------HHHHHhcCCCeEEEeCh
Q 027749 127 FINIQAHACVGGKS--------VG---------------------------------------EDIRKLEHGVHVVSGTP 159 (219)
Q Consensus 127 ~~~~~~~~~~~~~~--------~~---------------------------------------~~~~~l~~~~~I~v~Tp 159 (219)
++++..+.|... .. ...+....+++|+|+|+
T Consensus 75 --~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~ 152 (540)
T 2vl7_A 75 --GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTY 152 (540)
T ss_dssp --TCCEEEC---------------------------------------------------------CTTGGGCSEEEEET
T ss_pred --CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEECh
Confidence 333333332211 00 00011224579999999
Q ss_pred HHHHHHHHcCCC-------CCCCccEEEeccchhhhc
Q 027749 160 GRVCDMIKRKTL-------RTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 160 ~~l~~~l~~~~~-------~~~~l~~lVvDE~h~l~~ 189 (219)
+.|++-...+.+ .+....++||||||++.+
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 153 PYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp HHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred HHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 999873332211 235577999999999843
No 77
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.62 E-value=4.8e-16 Score=143.84 Aligned_cols=158 Identities=16% Similarity=0.074 Sum_probs=104.1
Q ss_pred CCChHHHHHHHHHHhC--CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccccee
Q 027749 54 EKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~--~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~ 131 (219)
..|+|+|.+++..+.. +.+++++++||+|||..++..+...+... ...++|||+|+ .|+.|+..++.+.. +..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPE-TLQHQWLVEMLRRF---NLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCT-TTHHHHHHHHHHHS---CCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCH-HHHHHHHHHHHHHh---CCC
Confidence 3789999999988775 35799999999999998877665555433 33469999999 99999999996655 444
Q ss_pred EEEEECCcccHHHHHH---hcCCCeEEEeChHHHHHHHHc-CCCCCCCccEEEeccchhhhccccH-HHHHHHHHhC-CC
Q 027749 132 AHACVGGKSVGEDIRK---LEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFK-DQIYDVYRYL-PP 205 (219)
Q Consensus 132 ~~~~~~~~~~~~~~~~---l~~~~~I~v~Tp~~l~~~l~~-~~~~~~~l~~lVvDE~h~l~~~~~~-~~~~~i~~~~-~~ 205 (219)
+..+.+.... ..... .....+|+|+|++.+...... ..+...++++|||||||++.+.+.. ......+..+ .+
T Consensus 227 v~v~~~~~~~-~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 227 FALFDDERYA-EAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp CEECCHHHHH-HHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred EEEEccchhh-hhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc
Confidence 4444332221 11111 123579999999877532111 1123457899999999998754311 1111222222 24
Q ss_pred CCeEEEEeeccc
Q 027749 206 DLQVCCPGSCFL 217 (219)
Q Consensus 206 ~~q~i~~SATl~ 217 (219)
..+++++|||.-
T Consensus 306 ~~~~L~LTATPi 317 (968)
T 3dmq_A 306 VPGVLLLTATPE 317 (968)
T ss_dssp CSSEEESCSSCS
T ss_pred CCcEEEEEcCCc
Confidence 457999999963
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.59 E-value=2.6e-14 Score=127.23 Aligned_cols=155 Identities=14% Similarity=0.090 Sum_probs=107.5
Q ss_pred CChHHHHHHHHHHh---------CCCcEEEEcCCCCchhHHhHHHHHhhhccCC----CceeEEEEcCCHHHHHHHHHHH
Q 027749 55 KPSAIQQRAVMPII---------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALILSPTRELATQTEKVI 121 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~---------~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~----~~~~~lil~P~~~l~~q~~~~~ 121 (219)
.++|+|.+++..+. .++..|+..+||.|||+.++..+...+.... ...++|||+|+ +++.|+.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999998763 4567899999999999887776655543321 22459999996 8899999999
Q ss_pred HHhccccceeEEEEECCcccHHH--HHHh-c-----CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccH
Q 027749 122 LAIGDFINIQAHACVGGKSVGED--IRKL-E-----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (219)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~--~~~l-~-----~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~ 193 (219)
.++... .+.+..+.++...... .... . ..++|+|+|++.+.... ..+.....++||+||+|++-+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~-- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD-- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC--
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh--
Confidence 998765 5666666666543221 1111 1 14789999999887543 22334567899999999987653
Q ss_pred HHHHHHHHhCCCCCeEEEEeecc
Q 027749 194 DQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 194 ~~~~~i~~~~~~~~q~i~~SATl 216 (219)
......+..++ ....+++|||.
T Consensus 209 ~~~~~al~~l~-~~~rl~LTgTP 230 (644)
T 1z3i_X 209 NQTYLALNSMN-AQRRVLISGTP 230 (644)
T ss_dssp HHHHHHHHHHC-CSEEEEECSSC
T ss_pred hHHHHHHHhcc-cCcEEEEecCc
Confidence 23333334443 45789999995
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.7e-15 Score=133.97 Aligned_cols=154 Identities=12% Similarity=0.118 Sum_probs=110.2
Q ss_pred CChHHHHHHHHHHh----CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.++|+|.+++..+. .+++.|+..+||.|||+.++..+...+........+||||| .+++.|+.+++.++.. +.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 67899999997654 78899999999999998876666554433333345899999 7788999999999874 46
Q ss_pred eEEEEECCcccHHHHHHh------------cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHH
Q 027749 131 QAHACVGGKSVGEDIRKL------------EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l------------~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~ 198 (219)
++....|........... ...++|+|+|++.+...... +.....++|||||||++-+.+ .....
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHH
Confidence 677777766554433321 23578999999998764322 112256789999999986543 34455
Q ss_pred HHHhCCCCCeEEEEeecc
Q 027749 199 VYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 199 i~~~~~~~~q~i~~SATl 216 (219)
.+..++ ....+++|||.
T Consensus 389 ~l~~l~-~~~rl~LTgTP 405 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTP 405 (800)
T ss_dssp HHTTSE-EEEEEEECSCC
T ss_pred HHHHhh-hccEEEeeCCc
Confidence 555553 45678999996
No 80
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.47 E-value=1.1e-13 Score=122.38 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=66.3
Q ss_pred CChHHHHHHHHH----HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccce
Q 027749 55 KPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (219)
Q Consensus 55 ~~~~~Q~~~~~~----~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~ 130 (219)
.|+|.|.+.+.. +.+|+++++++|||+|||++|++|++..+... +.+++|++||++++.|+.+.+..+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 689999998754 56889999999999999999999999987653 457999999999999999999888765556
Q ss_pred eEEEEEC
Q 027749 131 QAHACVG 137 (219)
Q Consensus 131 ~~~~~~~ 137 (219)
++..+.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 6555444
No 81
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.27 E-value=4.6e-11 Score=105.57 Aligned_cols=144 Identities=18% Similarity=0.217 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHhCCCcEEEEcCCCCchh--HHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKT--SMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~lv~~~tG~GKT--~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
++.|+.+++.++.++.+++.|++|+||| ++++++.+..+... .+.++++++||..++.++.+.+.......++....
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~ 229 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQ 229 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHH
Confidence 6889999999999999999999999999 55666666654322 34679999999999999998887654433322110
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
. .+.. .....+ ..++-.+|+... +.........+++|||||++ |.+ ...+..+++.++.+.|++++.
T Consensus 230 ~-~~~~--~~~~Ti---h~ll~~~~~~~~--~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~liLvG 296 (608)
T 1w36_D 230 K-KRIP--EDASTL---HRLLGAQPGSQR--LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARVIFLG 296 (608)
T ss_dssp C-CSCS--CCCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEEEEEE
T ss_pred H-hccc--hhhhhh---HhhhccCCCchH--HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEEEEEc
Confidence 0 0000 000000 011212232210 11112223378999999999 454 467788899999999999886
No 82
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.20 E-value=2.5e-10 Score=101.06 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=100.6
Q ss_pred HCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc
Q 027749 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (219)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~ 129 (219)
..|. .|+++|....-.+..|+ |....||.|||+++.+|++-..... ..+.|++|+..||.+-.+.+..+....|
T Consensus 71 ~lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G---~~vhVvT~ndyLA~rdae~m~~l~~~Lg 144 (822)
T 3jux_A 71 TLGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIG---KGVHLVTVNDYLARRDALWMGPVYLFLG 144 (822)
T ss_dssp HTSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTS---SCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HhCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcC---CceEEEeccHHHHHhHHHHHHHHHHHhC
Confidence 3455 79999988888887776 8999999999999999998766653 3499999999999999999999999999
Q ss_pred eeEEEEECC--------------------------------------------------cccHHHHHHhcCCCeEEEeCh
Q 027749 130 IQAHACVGG--------------------------------------------------KSVGEDIRKLEHGVHVVSGTP 159 (219)
Q Consensus 130 ~~~~~~~~~--------------------------------------------------~~~~~~~~~l~~~~~I~v~Tp 159 (219)
+++.+.... .+..++.. ...|+|..+|.
T Consensus 145 lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~--aY~~DItYgTn 222 (822)
T 3jux_A 145 LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE--AYLCDVTYGTN 222 (822)
T ss_dssp CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH--HHHSSEEEEEH
T ss_pred CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH--HhcCCCEEccC
Confidence 999988872 11111111 12589999999
Q ss_pred HHHHH-HHHcC------CCCCCCccEEEeccchhhh
Q 027749 160 GRVCD-MIKRK------TLRTRAIKLLVLDESDEML 188 (219)
Q Consensus 160 ~~l~~-~l~~~------~~~~~~l~~lVvDE~h~l~ 188 (219)
..|-. .++-+ ......+.+.||||+|.++
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 88754 44321 1223568899999999766
No 83
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.75 E-value=6e-08 Score=82.89 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=81.6
Q ss_pred HHHCCCCCChHHHHHHHHHHhC----C-CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 027749 48 IYQYGFEKPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (219)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~~~~----~-~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (219)
+.-+.+..+++-|+.++..+.. + ..++|.|+.|+|||... ..++..+...+. ..+++++||...+..+.+.+.
T Consensus 18 ~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~~ 95 (459)
T 3upu_A 18 GSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-TGIILAAPTHAAKKILSKLSG 95 (459)
T ss_dssp ---CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-CCEEEEESSHHHHHHHHHHHS
T ss_pred cCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-ceEEEecCcHHHHHHHHhhhc
Confidence 4455678899999999987643 2 38999999999999443 444555544322 359999999999887776551
Q ss_pred HhccccceeEEEEECCcccHHHHHHhc----CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHH
Q 027749 123 AIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (219)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~ 198 (219)
.....+ .....+. .+...+.. .........++|||||++.+. ...+..
T Consensus 96 -------~~~~T~-------h~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~~~ 147 (459)
T 3upu_A 96 -------KEASTI-------HSILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLFKI 147 (459)
T ss_dssp -------SCEEEH-------HHHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHHHH
T ss_pred -------cchhhH-------HHHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHHHHH
Confidence 111110 0000000 00111111 122345678999999999643 345566
Q ss_pred HHHhCCCCCeEEEEe
Q 027749 199 VYRYLPPDLQVCCPG 213 (219)
Q Consensus 199 i~~~~~~~~q~i~~S 213 (219)
+++.++...+++++.
T Consensus 148 l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 148 LLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHSCTTCEEEEEE
T ss_pred HHHhccCCCEEEEEC
Confidence 666666666676654
No 84
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.71 E-value=2.5e-07 Score=82.06 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
..+++.|..++..++.+...+|+||+|+|||....- ++..+... .+.++++++||...+.++.+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 356899999999988878899999999999965443 33333322 3456999999999999999988654
No 85
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.70 E-value=1.4e-07 Score=82.68 Aligned_cols=125 Identities=22% Similarity=0.259 Sum_probs=81.2
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
.+++.|+.++..+..++.+++.|+.|+|||... ..++..+... +.++++++||...+..+.+.+. .....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~~~-------~~a~T 258 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAESL--GLEVGLCAPTGKAARRLGEVTG-------RTAST 258 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHT-------SCEEE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHhc--CCeEEEecCcHHHHHHhHhhhc-------ccHHH
Confidence 578999999999998899999999999999543 3344444433 3569999999999987766542 11100
Q ss_pred EECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
. .. .+.. .|.. ...........++|||||++++. ...+..+++.++...+++++.
T Consensus 259 ------i-h~--ll~~-------~~~~----~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 259 ------V-HR--LLGY-------GPQG----FRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp ------H-HH--HTTE-------ETTE----ESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred ------H-HH--HHcC-------Ccch----hhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 0 00 0000 0000 00111233467899999999654 356777788888777887764
No 86
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.66 E-value=5.4e-08 Score=86.63 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHhCCC-cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~-~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
.+++.|.+|+..++..+ -.+|+||.|||||.+..-.+.+.+. . +.++|+++||+..++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~-~--~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVK-Q--GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHH-T--TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHh-C--CCeEEEEcCchHHHHHHHHHHHhc
Confidence 46899999999988655 5799999999999765544444443 3 356999999999999999988654
No 87
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.64 E-value=4.7e-07 Score=82.31 Aligned_cols=68 Identities=18% Similarity=0.210 Sum_probs=53.3
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
.+++.|..++..++.+...+|.||.|+|||....-. +..+... .+.++++++||...+.++.+.+.+.
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~-i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATI-VYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHH-HHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH-HHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 468999999999888777899999999999654433 3333221 2346999999999999999998765
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.62 E-value=5.9e-07 Score=81.61 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=53.6
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHh
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~ 124 (219)
.+++.|..++..++.+...+|.||.|+|||.... .++..+... .+.++++++||...+.++.+.+.+.
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4689999999998888889999999999996543 334444332 3456999999999999999988654
No 89
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.98 E-value=3.7e-05 Score=63.98 Aligned_cols=122 Identities=11% Similarity=0.155 Sum_probs=77.2
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc--eeE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQA 132 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~--~~~ 132 (219)
.++|+|...+..+...+..++..+-+.|||......++..+... .+..+++++|+...|..+++.+..+..... ++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~~ 241 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhhh
Confidence 78999999998765556789999999999987766555544332 355799999999999999888877654322 110
Q ss_pred -EEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 133 -HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 133 -~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
..-.+... ..+.+|..|.+.+.. ...+.. ....++|+||+|.+-+
T Consensus 242 ~~~~~~~~~-----I~f~nGs~i~~lsa~--~~slrG-----~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 242 GIVEWNKGS-----IELDNGSSIGAYASS--PDAVRG-----NSFAMIYIEDCAFIPN 287 (385)
T ss_dssp CEEEECSSE-----EEETTSCEEEEEECS--HHHHHT-----SCCSEEEEESGGGSTT
T ss_pred hhccCCccE-----EEeCCCCEEEEEECC--CCCccC-----CCCCEEEechhhhcCC
Confidence 00001000 112345555544421 012222 2357899999998654
No 90
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.89 E-value=0.00013 Score=64.70 Aligned_cols=109 Identities=15% Similarity=0.194 Sum_probs=73.1
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhccccceeE
Q 027749 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIGDFINIQA 132 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (219)
..+++-|.+++.. .+..++|.|+.|||||.+..--+.+.+...+ ...+++++++|+..+.++.+++.+.....
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~---- 81 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS---- 81 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC----
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc----
Confidence 4689999999973 3568999999999999766555555554322 33479999999999999999998764210
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHHH-HHcCCCCCC-CccEEEeccchh
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDM-IKRKTLRTR-AIKLLVLDESDE 186 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~-l~~~~~~~~-~l~~lVvDE~h~ 186 (219)
...+-|+|.+.|..- +........ .-.+-|+|+.+.
T Consensus 82 ------------------~~~~~v~Tfhs~~~~il~~~~~~~~~~~~~~i~~~~~~ 119 (647)
T 3lfu_A 82 ------------------QGGMWVGTFHGLAHRLLRAHHMDANLPQDFQILDSEDQ 119 (647)
T ss_dssp ------------------CTTCEEEEHHHHHHHHHHHTTGGGTCCTTCEEECHHHH
T ss_pred ------------------cCCcEEEcHHHHHHHHHHHHHHHhCCCCCCEEeCHHHH
Confidence 135678888888663 333221111 123456776653
No 91
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.75 E-value=0.00052 Score=60.36 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=78.0
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccc--eeE
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQA 132 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~--~~~ 132 (219)
.++|+|...+..+...+..++..+-|+|||......++..+... .+..+++++|+...+..+++.++.+....+ +..
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~~ 241 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQP 241 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhcc
Confidence 57999999988775567799999999999977665555544433 345799999999999999988887765442 111
Q ss_pred EEE-ECCcccHHHHHHhcCCCeEEEeC--hHHHHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 133 HAC-VGGKSVGEDIRKLEHGVHVVSGT--PGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 133 ~~~-~~~~~~~~~~~~l~~~~~I~v~T--p~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
... .+... ..+.+|..|.+.+ |+++ ... ...++|+||+|.+-+
T Consensus 242 ~~~~~~~~~-----i~~~nGs~i~~~s~~~~~l----rG~-----~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 242 GIVEWNKGS-----IELDNGSSIGAYASSPDAV----RGN-----SFAMIYIEDCAFIPN 287 (592)
T ss_dssp CEEEECSSE-----EEETTSCEEEEEECCHHHH----HHS-----CCSEEEEETGGGCTT
T ss_pred ccccCCccE-----EEecCCCEEEEEeCCCCCc----cCC-----CcceEEEehhccCCc
Confidence 000 01100 1123456555543 3322 222 357899999997644
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.66 E-value=0.00031 Score=51.82 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|+.+++.||+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999443
No 93
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.65 E-value=0.00028 Score=59.66 Aligned_cols=105 Identities=23% Similarity=0.139 Sum_probs=61.4
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (219)
-.++.|+.|+|||.... +.+.. ...+|++||++++.++.+.+.+.... ..
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~~~----------------------~~ 212 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF----EEDLILVPGRQAAEMIRRRANASGII----------------------VA 212 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT----TTCEEEESCHHHHHHHHHHHTTTSCC----------------------CC
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc----CCeEEEeCCHHHHHHHHHHhhhcCcc----------------------cc
Confidence 46899999999994432 22221 23699999999999888877432100 01
Q ss_pred CeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 152 ~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
...-|.|-++++. .......-..++|||||+- |...+ .+..++...+. .+++++.
T Consensus 213 ~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~s-m~~~~---~l~~l~~~~~~-~~vilvG 267 (446)
T 3vkw_A 213 TKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGL-MLHTG---CVNFLVEMSLC-DIAYVYG 267 (446)
T ss_dssp CTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGG-GSCHH---HHHHHHHHTTC-SEEEEEE
T ss_pred ccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcc-cCCHH---HHHHHHHhCCC-CEEEEec
Confidence 1223567665442 2222222347899999997 44443 33344444443 5666654
No 94
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.52 E-value=0.00029 Score=62.86 Aligned_cols=69 Identities=29% Similarity=0.371 Sum_probs=52.0
Q ss_pred CCCCChHHHHHHHHHHh----CCC-cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 027749 52 GFEKPSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (219)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~----~~~-~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (219)
++ .|++.|..++..+. .|. ..++.+.||+|||+.+.- ++... . . .+|||+|+..+|.|+++.++.+..
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~--~--~-~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL--G--R-PALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--T--C-CEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh--C--C-CEEEEecCHHHHHHHHHHHHHHCC
Confidence 45 89999998887654 343 467889999999965543 23332 1 1 399999999999999999999964
Q ss_pred c
Q 027749 127 F 127 (219)
Q Consensus 127 ~ 127 (219)
.
T Consensus 79 ~ 79 (664)
T 1c4o_A 79 E 79 (664)
T ss_dssp T
T ss_pred C
Confidence 3
No 95
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.40 E-value=0.00032 Score=62.61 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhcc-CCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGD 126 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~-~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (219)
.+++-|++++... +.+++|.|+.|||||.+..--+.+.+.. .....++++|+.|+..+.++.+++.+...
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999998753 5789999999999997665555554443 22345699999999999999999987654
No 96
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.40 E-value=0.00083 Score=54.28 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+.++++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999443
No 97
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.34 E-value=0.00059 Score=61.43 Aligned_cols=70 Identities=17% Similarity=0.194 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC-CceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~-~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
..+++-|++++.. .+.+++|.|+.|||||.+..--+.+.+...+ ...++++|+.|+..+.++.+++.+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999876 3568999999999999766555555554322 34569999999999999999997764
No 98
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.33 E-value=0.0027 Score=47.52 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=26.7
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..-.+||+||+|.+... ....+..+++..+.+..+|+.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45678999999987643 3556667777766666666554
No 99
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=97.32 E-value=0.0011 Score=58.81 Aligned_cols=113 Identities=12% Similarity=0.167 Sum_probs=75.9
Q ss_pred CChHHHHHHHHHHhC--CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeE
Q 027749 55 KPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~--~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~ 132 (219)
.+|..|.+++..+.. ....++.|+-|.|||.+.-+.+ ..+.. .++|.+|+.+-+..+++...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~~-----~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIAG-----RAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSSS-----CEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHHh-----CcEEECCCHHHHHHHHHHhhC---------
Confidence 578899999988775 3357999999999995544433 43332 269999999988766554321
Q ss_pred EEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
.|-+..|+.+. . ...+.++||||||=.+- ...+..++... ..++|
T Consensus 240 --------------------~i~~~~Pd~~~---~----~~~~~dlliVDEAAaIp----~pll~~ll~~~----~~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALL---A----SDEQADWLVVDEAAAIP----APLLHQLVSRF----PRTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHH---H----SCCCCSEEEEETGGGSC----HHHHHHHHTTS----SEEEE
T ss_pred --------------------CeEEeCchhhh---h----CcccCCEEEEEchhcCC----HHHHHHHHhhC----CeEEE
Confidence 13334676533 1 13458999999997544 46667776643 35788
Q ss_pred eeccc
Q 027749 213 GSCFL 217 (219)
Q Consensus 213 SATl~ 217 (219)
|.|+.
T Consensus 285 ~tTv~ 289 (671)
T 2zpa_A 285 TTTVQ 289 (671)
T ss_dssp EEEBS
T ss_pred EecCC
Confidence 88763
No 100
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.30 E-value=0.00055 Score=65.15 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHhHHHHHhhhccCC---CceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~---~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
.+++-|.+++..- +++++|.|+.|||||.+.+--++..+.... ..-+++++++|+..+.++.+++....
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 5799999998764 789999999999999777666666665532 34579999999999999999997643
No 101
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.25 E-value=0.00016 Score=51.97 Aligned_cols=44 Identities=9% Similarity=0.182 Sum_probs=26.3
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCC-CCeEEEEeecccC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVCCPGSCFLF 218 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~-~~q~i~~SATl~~ 218 (219)
.+.+++|+||.+.+.... ...+..+++.+.. ...++++++..++
T Consensus 82 ~~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 82 FEAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp GGCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred hCCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCCCH
Confidence 346799999999755433 5556666555432 2343556666543
No 102
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0021 Score=52.10 Aligned_cols=40 Identities=15% Similarity=0.417 Sum_probs=24.9
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhC---CCCCeEEEEeecc
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL---PPDLQVCCPGSCF 216 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~---~~~~q~i~~SATl 216 (219)
....+|++||+|.+.+ ...+..++++. ....-+|+.++|+
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCc
Confidence 3456899999999883 24444455432 2234566777775
No 103
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.16 E-value=0.0045 Score=43.88 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=22.8
Q ss_pred cEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 177 KLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 177 ~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
+.|++||+|.+... ....+..++...+.+.++|+-|
T Consensus 78 g~l~ldei~~l~~~-~q~~Ll~~l~~~~~~~~~I~~t 113 (145)
T 3n70_A 78 GTLVLSHPEHLTRE-QQYHLVQLQSQEHRPFRLIGIG 113 (145)
T ss_dssp SCEEEECGGGSCHH-HHHHHHHHHHSSSCSSCEEEEE
T ss_pred cEEEEcChHHCCHH-HHHHHHHHHhhcCCCEEEEEEC
Confidence 46999999987543 3445555555555566665544
No 104
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.15 E-value=0.0026 Score=52.13 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=20.0
Q ss_pred CccEEEeccchhhhccc-cHHHHHHHHHhC
Q 027749 175 AIKLLVLDESDEMLSRG-FKDQIYDVYRYL 203 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~-~~~~~~~i~~~~ 203 (219)
.-.+||+||+|.+.... ....+..+++..
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 35589999999987542 345566666654
No 105
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.13 E-value=0.0023 Score=54.24 Aligned_cols=40 Identities=15% Similarity=0.426 Sum_probs=24.2
Q ss_pred CccEEEeccchhhhcc-ccHHHHHHHHHhC-CCCCeEEEEeec
Q 027749 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYL-PPDLQVCCPGSC 215 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~-~~~~~~~~i~~~~-~~~~q~i~~SAT 215 (219)
..++|++||+|.+... .....+..+++.+ ..+.++|+ ++.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIi-tt~ 235 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVI-CSD 235 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEE-EES
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEE-EEC
Confidence 4678999999998753 2344455555543 33455555 444
No 106
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.10 E-value=0.002 Score=52.50 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHh----CCC---cEEEEcCCCCchhHHhHHHHHhhh
Q 027749 56 PSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 56 ~~~~Q~~~~~~~~----~~~---~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
.+|||..++..+. +|+ ..++.||.|+|||..... +...+
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~-la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA-LSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH-HHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH-HHHHH
Confidence 3577777776543 443 389999999999955443 33444
No 107
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.01 E-value=0.00069 Score=51.78 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.++++++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999443
No 108
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.97 E-value=0.012 Score=47.89 Aligned_cols=40 Identities=8% Similarity=0.223 Sum_probs=28.4
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEee
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPGS 214 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~SA 214 (219)
.+-+++|+||+|. ++......+...++..+.+..+|+.|-
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~ 172 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCD 172 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEES
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 4567999999998 455556777778887766666666553
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.96 E-value=0.0013 Score=48.88 Aligned_cols=39 Identities=13% Similarity=0.219 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
|+-.++.|++|+|||...+- ++..+... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~-~~~~~~~~--g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLS-FVEIYKLG--KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHH-HHHHHHHT--TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHH-HHHHHHHC--CCeEEEEeecc
Confidence 45578999999999955543 33443333 23588887763
No 110
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.94 E-value=0.011 Score=41.82 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=15.6
Q ss_pred hCCCcEEEEcCCCCchhH
Q 027749 68 IKGRDVIAQAQSGTGKTS 85 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~ 85 (219)
..+.+++++|++|+|||.
T Consensus 25 ~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp TCSSCEEEEEETTCCHHH
T ss_pred CCCCcEEEECCCCccHHH
Confidence 456789999999999993
No 111
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.87 E-value=0.0045 Score=48.82 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=32.6
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHH--HhCCCcEEEEcCCCCchhHHh
Q 027749 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~--~~~~~~~lv~~~tG~GKT~~~ 87 (219)
-.+|+++.-.+..++.+.+.-. .+.. ....+.. +...+++++.||+|+|||...
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVE-LPLK-HPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH-HHHH-CHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH-HHhh-CHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3568888777777777765321 1100 1112222 234578999999999999443
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.84 E-value=0.0063 Score=46.69 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=58.7
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (219)
.|.-.++.|++|+|||...+- ++.++... +.+++++.|...- . ....+....++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~-~~~r~~~~--g~kVli~~~~~d~--r---~~~~i~srlG~~~---------------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIR-RLHRLEYA--DVKYLVFKPKIDT--R---SIRNIQSRTGTSL---------------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHH-HHHHHHHT--TCCEEEEEECCCG--G---GCSSCCCCCCCSS----------------
T ss_pred CcEEEEEECCCCCcHHHHHHH-HHHHHHhc--CCEEEEEEeccCc--h---HHHHHHHhcCCCc----------------
Confidence 345578899999999955544 34444433 3347777665421 0 0001111111110
Q ss_pred cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 149 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..+-+.+...+...+.... .-.+.++|||||++.+.. .....+..+.+. +.++++..
T Consensus 67 ---~~~~~~~~~~i~~~i~~~~-~~~~~dvViIDEaQ~l~~-~~ve~l~~L~~~---gi~Vil~G 123 (223)
T 2b8t_A 67 ---PSVEVESAPEILNYIMSNS-FNDETKVIGIDEVQFFDD-RICEVANILAEN---GFVVIISG 123 (223)
T ss_dssp ---CCEEESSTHHHHHHHHSTT-SCTTCCEEEECSGGGSCT-HHHHHHHHHHHT---TCEEEEEC
T ss_pred ---cccccCCHHHHHHHHHHHh-hCCCCCEEEEecCccCcH-HHHHHHHHHHhC---CCeEEEEe
Confidence 1233456666766665432 234578999999986432 233344443332 45555543
No 113
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.81 E-value=0.0019 Score=53.07 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=22.0
Q ss_pred EEEeccchhhhccccHHH-HHHHHHhCCCCCeEEEEee
Q 027749 178 LLVLDESDEMLSRGFKDQ-IYDVYRYLPPDLQVCCPGS 214 (219)
Q Consensus 178 ~lVvDE~h~l~~~~~~~~-~~~i~~~~~~~~q~i~~SA 214 (219)
+||+||+|.+........ +..+++.. .+..+|+.|.
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~ 172 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISN 172 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEEC
Confidence 899999999875432344 55555554 3444554443
No 114
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.78 E-value=0.015 Score=45.57 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
+++++.||+|+|||..+
T Consensus 65 ~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 47999999999999544
No 115
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.74 E-value=0.009 Score=44.65 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
|+=.++.|++|+|||...+ -++.++... +.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~~--g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKIA--KQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHHT--TCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHHC--CCEEEEEEecc
Confidence 4457889999999995554 444544433 34588888763
No 116
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.70 E-value=0.0085 Score=47.92 Aligned_cols=39 Identities=13% Similarity=0.298 Sum_probs=26.5
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..-++||+||+|.+... ....+...++..+.+..+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45678999999987643 3455666777766666665544
No 117
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.69 E-value=0.007 Score=53.89 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=50.0
Q ss_pred CChHHHHHHHHHHh----CCC-cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccc
Q 027749 55 KPSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~-~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~ 127 (219)
.|+..|..++..+. .|. ...+.+.||+|||+...- ++... . . .+|||+|+..+|.|+++.++.+...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~--~--~-~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV--N--K-PTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH--C--C-CEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh--C--C-CEEEEECCHHHHHHHHHHHHHHcCC
Confidence 78889988887544 343 467889999999955432 23332 1 1 3999999999999999999999643
No 118
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.68 E-value=0.0047 Score=49.75 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=26.9
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
...++|++||+|.+........+...++..+.+.++|+.+
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 3678999999998862333556666666655566666644
No 119
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.64 E-value=0.0027 Score=50.72 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=23.2
Q ss_pred cEEEeccchhhhcc--------ccHHHHHHHHHhCCCCCeEEEEe
Q 027749 177 KLLVLDESDEMLSR--------GFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 177 ~~lVvDE~h~l~~~--------~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
++|++||+|.+... .....+..+++..+.+..+|+.+
T Consensus 132 ~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~ 176 (309)
T 3syl_A 132 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAG 176 (309)
T ss_dssp SEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEE
T ss_pred CEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 58999999988521 23345556666655555555554
No 120
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.60 E-value=0.0038 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=17.0
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhc
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVD 96 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~ 96 (219)
.+++.||+|+|||... -.+...+.
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHT
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHh
Confidence 7999999999999443 33444443
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.52 E-value=0.0048 Score=46.07 Aligned_cols=25 Identities=20% Similarity=0.442 Sum_probs=17.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhc
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVD 96 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~ 96 (219)
++++++||+|+|||.... .+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 689999999999995432 3344443
No 122
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.49 E-value=0.021 Score=46.58 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
++.+++.||.|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999443
No 123
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.45 E-value=0.012 Score=44.70 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=24.7
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHH
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 112 (219)
+=.++.|++|+|||...+-. +.++... +.+++++.|...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~-a~r~~~~--g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRR-VRRTQFA--KQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHH-HHHHHHT--TCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHH-HHHHHHC--CCEEEEEEeccC
Confidence 33568999999999555444 4444433 345888888653
No 124
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.44 E-value=0.019 Score=44.13 Aligned_cols=39 Identities=10% Similarity=0.214 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
|+=.++.|++|+|||...+-. +.+.... +.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~-~~r~~~~--g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRR-VRRFQIA--QYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHH-HHHHHTT--TCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHH-HHHHHHC--CCeEEEEeecC
Confidence 455778999999999555444 4444333 34588887764
No 125
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.43 E-value=0.053 Score=40.73 Aligned_cols=38 Identities=11% Similarity=0.164 Sum_probs=23.6
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.-.+||+||+|.+... ....+...++..+....+|+.|
T Consensus 126 ~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEE
T ss_pred CceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 3468999999986533 3445555666555555555544
No 126
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.41 E-value=0.0097 Score=45.32 Aligned_cols=99 Identities=6% Similarity=-0.003 Sum_probs=51.0
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (219)
.|.=.++.|++|+|||...+-. +.++... +.+++++.|...-- +. -..+....+...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~-~~r~~~~--g~kvli~kp~~D~R---~~-~~~I~Sr~G~~~---------------- 83 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRR-LRRGIYA--KQKVVVFKPAIDDR---YH-KEKVVSHNGNAI---------------- 83 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHH-HHHHHHT--TCCEEEEEEC---------------CBTTBCC----------------
T ss_pred CceEEEEECCCCCCHHHHHHHH-HHHHHHc--CCceEEEEeccCCc---ch-hhhHHHhcCCce----------------
Confidence 3455788999999999544444 4544443 34588888864311 00 011111112111
Q ss_pred cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHH
Q 027749 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (219)
Q Consensus 149 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~ 200 (219)
.-+.|..+..+...+ ..+.++|+|||++- ++......+..+.
T Consensus 84 ---~a~~v~~~~di~~~i------~~~~dvV~IDEaQF-f~~~~v~~l~~la 125 (219)
T 3e2i_A 84 ---EAINISKASEIMTHD------LTNVDVIGIDEVQF-FDDEIVSIVEKLS 125 (219)
T ss_dssp ---EEEEESSGGGGGGSC------CTTCSEEEECCGGG-SCTHHHHHHHHHH
T ss_pred ---eeEEeCCHHHHHHHH------hcCCCEEEEechhc-CCHHHHHHHHHHH
Confidence 123344443332221 24678999999985 4444566666665
No 127
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.0082 Score=47.91 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=25.9
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
+-.+||+||+|.+.... ...+...++..+.+..+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 46789999999876432 445566666666666666654
No 128
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.32 E-value=0.011 Score=47.83 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=26.0
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..++|++||+|.+... ....+..+++..+....+++.+
T Consensus 133 ~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp SCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 4579999999987643 3456667777766665555544
No 129
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.26 E-value=0.012 Score=42.79 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
.+++++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999443
No 130
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.23 E-value=0.049 Score=44.10 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=27.7
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
...+++|+||+|.|... ....+..+++..+.+..+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 45789999999987643 3556777777777666666544
No 131
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.22 E-value=0.02 Score=42.89 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~ 110 (219)
|+=.++.||+|+|||.- ++-.+.+.... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHT--TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHc--CCeEEEEccc
Confidence 45578899999999944 34344444333 2458888776
No 132
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.19 E-value=0.06 Score=43.18 Aligned_cols=40 Identities=8% Similarity=0.138 Sum_probs=26.7
Q ss_pred CCCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..+.+++|+||+|.|.... .+.+.+.++.-|++.-+|+.+
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3467899999999987544 345666666655555555544
No 133
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.06 E-value=0.0053 Score=49.41 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
++++++.||+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999443
No 134
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.86 E-value=0.04 Score=43.74 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=25.8
Q ss_pred CccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
.+|+++--.+.+.+.+.+. +.. ....++++.||.|+|||...
T Consensus 14 ~~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHH
Confidence 4566655566666666543 111 11235999999999999443
No 135
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.83 E-value=0.1 Score=44.89 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=26.4
Q ss_pred CCccEEEeccchhhhcc--ccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 174 RAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~--~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
..-.+|++||+|.+... +....+..+++.. ...+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 34568999999998753 2335555666553 44577777653
No 136
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.60 E-value=0.028 Score=45.24 Aligned_cols=50 Identities=8% Similarity=0.141 Sum_probs=32.1
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-----CCCcEEEEcCCCCchhHHh
Q 027749 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII-----KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~-----~~~~~lv~~~tG~GKT~~~ 87 (219)
-.+|+++.-...+.+.+.+.-. +|. ..|... ..+++++.||+|+|||...
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3568888878888888875421 111 112211 2357999999999999544
No 137
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.56 E-value=0.075 Score=43.21 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..-.+||+||+|.+.... ...+...++..+.+..+|+.+
T Consensus 118 ~~~~vliiDe~~~l~~~~-~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHHH-HHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHHH-HHHHHHHHhcCCCceEEEEEe
Confidence 456789999999876433 455566666655555555544
No 138
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.53 E-value=0.039 Score=45.52 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=13.6
Q ss_pred CcEEE--EcCCCCchhHHh
Q 027749 71 RDVIA--QAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv--~~~tG~GKT~~~ 87 (219)
..++| .|+.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46788 899999999443
No 139
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.46 E-value=0.054 Score=43.64 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.++++.||+|+|||...
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999544
No 140
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.36 E-value=0.059 Score=46.18 Aligned_cols=40 Identities=15% Similarity=0.217 Sum_probs=26.7
Q ss_pred cEEEeccchhhhcc----------ccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 177 KLLVLDESDEMLSR----------GFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 177 ~~lVvDE~h~l~~~----------~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
.+|++||+|.+... .....+...++.......++++.||=
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn 348 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEES
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecC
Confidence 57999999988752 12344556666666666677777764
No 141
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.25 E-value=0.16 Score=42.85 Aligned_cols=43 Identities=12% Similarity=0.309 Sum_probs=26.2
Q ss_pred CCccEEEeccchhhh---ccccHHHHHHHHHhCCCCCeEEEEeecc
Q 027749 174 RAIKLLVLDESDEML---SRGFKDQIYDVYRYLPPDLQVCCPGSCF 216 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~---~~~~~~~~~~i~~~~~~~~q~i~~SATl 216 (219)
.+.+++|+|++-++. +..+...+..+.+...++.-++.++|+.
T Consensus 178 ~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 178 NKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp TTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred cCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 456778888876543 2345556666666665555566666654
No 142
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.23 E-value=0.053 Score=43.29 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
..++++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999443
No 143
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.18 E-value=0.097 Score=37.55 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=54.4
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCcc
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~ 177 (219)
.++||.++++..+..+.+.+.+. ++.+..++|+.+..++...+ ....+|+|+|. . ...++++..++
T Consensus 36 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gld~~~~~ 105 (163)
T 2hjv_A 36 DSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----V-AARGIDIENIS 105 (163)
T ss_dssp SSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTTTCCCSCCS
T ss_pred CcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----h-hhcCCchhcCC
Confidence 46999999999999999888765 67788888887765543333 23678999993 2 24677888899
Q ss_pred EEEeccc
Q 027749 178 LLVLDES 184 (219)
Q Consensus 178 ~lVvDE~ 184 (219)
+||.-+.
T Consensus 106 ~Vi~~~~ 112 (163)
T 2hjv_A 106 LVINYDL 112 (163)
T ss_dssp EEEESSC
T ss_pred EEEEeCC
Confidence 8886544
No 144
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=95.07 E-value=0.13 Score=37.26 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=54.0
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
..++||.++++..+..+...+... ++.+..++|+.+..++...+ ....+|+|+|.- ...++++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~------~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV------CARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS------CCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc------hhcCCCcccC
Confidence 457999999999999888888654 67788888887766554333 236789999941 2467788889
Q ss_pred cEEEecc
Q 027749 177 KLLVLDE 183 (219)
Q Consensus 177 ~~lVvDE 183 (219)
.+||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8888433
No 145
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.99 E-value=0.092 Score=43.39 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
.+++++.||+|+|||...
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999444
No 146
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.96 E-value=0.12 Score=43.69 Aligned_cols=140 Identities=21% Similarity=0.201 Sum_probs=64.0
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (219)
.|.-++|.|++|+|||. +.+-++..+.... +..++|+..-. -..|+..++..........-. ..|..+ ..++..+
T Consensus 199 ~G~l~ii~G~pg~GKT~-lal~ia~~~a~~~-g~~vl~~slE~-~~~~l~~R~~~~~~~i~~~~l-~~g~l~-~~~~~~~ 273 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTA-FALTIAQNAALKE-GVGVGIYSLEM-PAAQLTLRMMCSEARIDMNRV-RLGQLT-DRDFSRL 273 (444)
T ss_dssp TTCEEEEEECTTSCHHH-HHHHHHHHHHHTT-CCCEEEEESSS-CHHHHHHHHHHHHTTCCTTTC-CGGGCC-HHHHHHH
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHhC-CCeEEEEECCC-CHHHHHHHHHHHHcCCCHHHH-hCCCCC-HHHHHHH
Confidence 44568999999999994 4444444333221 22366665432 233444443221111111000 011111 1222221
Q ss_pred c------CCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhcc--c-----cHHHHHHHHHhCC-----C
Q 027749 149 E------HGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR--G-----FKDQIYDVYRYLP-----P 205 (219)
Q Consensus 149 ~------~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~--~-----~~~~~~~i~~~~~-----~ 205 (219)
. ....+.+- |++.+...+..-. .-..+++||||..+.+... + -...+..+.+.+. .
T Consensus 274 ~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~ 352 (444)
T 2q6t_A 274 VDVASRLSEAPIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALAREL 352 (444)
T ss_dssp HHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 1 12345552 3444544332210 0125889999999988643 1 1223334433331 2
Q ss_pred CCeEEEEee
Q 027749 206 DLQVCCPGS 214 (219)
Q Consensus 206 ~~q~i~~SA 214 (219)
++.++++|.
T Consensus 353 ~v~vi~lsq 361 (444)
T 2q6t_A 353 GIPIIALSQ 361 (444)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEEec
Confidence 567787765
No 147
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.91 E-value=0.25 Score=37.44 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=30.0
Q ss_pred hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 027749 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (219)
..|.-+++.|++|+|||.....-+...+ .. +.+++++.-.. ...++.+.+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~-~~--~~~v~~~~~e~-~~~~~~~~~~~ 72 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGL-KM--GEPGIYVALEE-HPVQVRQNMAQ 72 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHH-HT--TCCEEEEESSS-CHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-hc--CCeEEEEEccC-CHHHHHHHHHH
Confidence 3566789999999999954333333332 22 22366665433 34555555543
No 148
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.91 E-value=0.15 Score=36.49 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=53.6
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
..++||.++++..+..+...+.+. ++.+..++|+.+..++...+ .....|+|+|. . ...++++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----G-GTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----h-hhcCCCcccC
Confidence 356999999999999988888764 57788888887765543333 24678999994 1 2466788888
Q ss_pred cEEEecc
Q 027749 177 KLLVLDE 183 (219)
Q Consensus 177 ~~lVvDE 183 (219)
++||.-+
T Consensus 100 ~~Vi~~~ 106 (165)
T 1fuk_A 100 SLVINYD 106 (165)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8877654
No 149
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.89 E-value=0.017 Score=48.93 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.+++++||+|+|||...
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999444
No 150
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.85 E-value=0.014 Score=47.61 Aligned_cols=49 Identities=24% Similarity=0.220 Sum_probs=28.4
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (219)
.|.-+++.|++|+|||. +.+-++..+... +..++|+..- .-..|+..++
T Consensus 45 ~G~LiiIaG~pG~GKTt-~al~ia~~~a~~--g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTS-LMMNMVLSALND--DRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHH-HHHHHHHHHHHT--TCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHc--CCeEEEEeCC-CCHHHHHHHH
Confidence 44568999999999994 444444433332 3346666543 2334444444
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.73 E-value=0.18 Score=42.65 Aligned_cols=139 Identities=22% Similarity=0.280 Sum_probs=63.3
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEE-ECCcccHHHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGEDIRK 147 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 147 (219)
.|.-++|.|++|+|||. +++-++..+.... +..++|+..-.. ..++..++..... ++....+ .|..+ ..++..
T Consensus 202 ~G~liiI~G~pG~GKTt-l~l~ia~~~~~~~-g~~Vl~~s~E~s-~~~l~~r~~~~~~--~~~~~~l~~g~l~-~~~~~~ 275 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTA-FALNIAQNVATKT-NENVAIFSLEMS-AQQLVMRMLCAEG--NINAQNLRTGKLT-PEDWGK 275 (454)
T ss_dssp TTCEEEEECCTTSCHHH-HHHHHHHHHHHHS-SCCEEEEESSSC-HHHHHHHHHHHHH--TCCHHHHHTSCCC-HHHHHH
T ss_pred CCCEEEEECCCCCCHHH-HHHHHHHHHHHhC-CCcEEEEECCCC-HHHHHHHHHHHHc--CCCHHHHhcCCCC-HHHHHH
Confidence 45668999999999994 4444444333211 223666654322 2344444321000 1110000 11111 122211
Q ss_pred hc------CCCeEEEe-----ChHHHHHHHHcCCCCCCCccEEEeccchhhhccc-----cHHHHHHHHHhCC-----CC
Q 027749 148 LE------HGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----FKDQIYDVYRYLP-----PD 206 (219)
Q Consensus 148 l~------~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~-----~~~~~~~i~~~~~-----~~ 206 (219)
+. ....+.+- |.+.+...+..-. .-..+++||||+.+.+.... ....+..+.+.+. .+
T Consensus 276 ~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~-~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~ 354 (454)
T 2r6a_A 276 LTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLK-QESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELE 354 (454)
T ss_dssp HHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHH-TTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 10 12345553 4444444333210 11358899999999887432 2233334333331 25
Q ss_pred CeEEEEee
Q 027749 207 LQVCCPGS 214 (219)
Q Consensus 207 ~q~i~~SA 214 (219)
+.++++|-
T Consensus 355 i~vi~~sq 362 (454)
T 2r6a_A 355 VPVIALSQ 362 (454)
T ss_dssp CCEEEEEC
T ss_pred CeEEEEec
Confidence 66777764
No 152
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.64 E-value=0.14 Score=38.57 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=52.8
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCcc
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~ 177 (219)
.++||.++++.-+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. . -..++++.+++
T Consensus 32 ~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~-~~~Gidi~~v~ 101 (212)
T 3eaq_A 32 DRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----V-AARGLDIPQVD 101 (212)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----T-TTCSSSCCCBS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----h-hhcCCCCccCc
Confidence 46999999999999998888765 67788889888766554333 24678999993 2 24677888888
Q ss_pred EEEe
Q 027749 178 LLVL 181 (219)
Q Consensus 178 ~lVv 181 (219)
+||.
T Consensus 102 ~Vi~ 105 (212)
T 3eaq_A 102 LVVH 105 (212)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 153
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.55 E-value=0.12 Score=41.54 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=29.0
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (219)
.|.-++|.|++|+|||. +.+-+...+.... ..++|+.-- .-..++..++.
T Consensus 67 ~G~l~li~G~pG~GKTt-l~l~ia~~~a~~g--~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTA-FALKQAKNMSDND--DVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHH-HHHHHHHHHHTTT--CEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHcC--CeEEEEECC-CCHHHHHHHHH
Confidence 45568999999999994 4343433333222 346666543 33445555543
No 154
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.49 E-value=0.46 Score=40.98 Aligned_cols=90 Identities=7% Similarity=0.070 Sum_probs=63.2
Q ss_pred HHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHH
Q 027749 88 ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVC 163 (219)
Q Consensus 88 ~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~ 163 (219)
+-.+...+.....+.++||.++++..+..+.+.+.+.... ++.+..++|+.+..++...+ ....+|+|+|.
T Consensus 326 ~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~---- 400 (563)
T 3i5x_A 326 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD---- 400 (563)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG----
T ss_pred HHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc----
Confidence 3334444444344567999999999999999999876432 57788888887766554333 24689999994
Q ss_pred HHHHcCCCCCCCccEEEeccc
Q 027749 164 DMIKRKTLRTRAIKLLVLDES 184 (219)
Q Consensus 164 ~~l~~~~~~~~~l~~lVvDE~ 184 (219)
. -..++++.++++||.-..
T Consensus 401 -~-~~~GiDip~v~~VI~~~~ 419 (563)
T 3i5x_A 401 -V-GARGMDFPNVHEVLQIGV 419 (563)
T ss_dssp -G-GTSSCCCTTCCEEEEESC
T ss_pred -h-hhcCCCcccCCEEEEECC
Confidence 2 346788888988876553
No 155
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.45 E-value=0.098 Score=39.31 Aligned_cols=19 Identities=32% Similarity=0.413 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|.-+++.||+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4567899999999999443
No 156
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.13 E-value=0.33 Score=35.85 Aligned_cols=72 Identities=22% Similarity=0.259 Sum_probs=53.7
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCcc
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~ 177 (219)
.++||.++++..+..+.+.+... ++.+..+.|+.+..++...+ ....+|+|+|. .+ ..++++.+++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~-~~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VA-SKGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HH-HTTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----ch-hcCCCcccCC
Confidence 46999999999999999888765 67788888887765543333 24688999993 32 3567888888
Q ss_pred EEEecc
Q 027749 178 LLVLDE 183 (219)
Q Consensus 178 ~lVvDE 183 (219)
+||.=+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 887644
No 157
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=94.13 E-value=0.12 Score=48.89 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=51.8
Q ss_pred EEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCC
Q 027749 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGV 152 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (219)
-+|.|+.|||||.+.+--+.+.+.....+.+++++||.+.... +.+++.... +.. ...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt-~~~rl~~~l---~~~------------------~~~ 61 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFL-MEYELAKTP---DMG------------------GMI 61 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHH-HHHHHTCCS---SCS------------------EES
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHH-HHHHHHHhh---hhc------------------cee
Confidence 3789999999997776666665555444567999999875544 333332221 100 013
Q ss_pred eEEEeChHHHHH-HHHcCCCCCCCccEEEeccch
Q 027749 153 HVVSGTPGRVCD-MIKRKTLRTRAIKLLVLDESD 185 (219)
Q Consensus 153 ~I~v~Tp~~l~~-~l~~~~~~~~~l~~lVvDE~h 185 (219)
++-|+|-.+|.. ++...+ ....-++|+.+
T Consensus 62 ~~~V~TFhsla~~il~~~g----~~~~~ild~~~ 91 (1166)
T 3u4q_B 62 RAQVFSFSRLAWRVLQHTG----GMSRPFLTSTG 91 (1166)
T ss_dssp SEEEECHHHHHHHHHHHHS----CTTSCEECHHH
T ss_pred eeEEecHHHHHHHHHHHcC----CCcccCcCHHH
Confidence 578889888876 333222 12234566655
No 158
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=94.04 E-value=0.17 Score=36.64 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=54.3
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
..++||.++++..+..+.+.+... ++.+..++|+.+..++...+ .....|+|+|.. ...++++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhC
Confidence 346999999999999998888765 67788888887765543333 246789999941 2456788888
Q ss_pred cEEEeccc
Q 027749 177 KLLVLDES 184 (219)
Q Consensus 177 ~~lVvDE~ 184 (219)
++||.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 88776544
No 159
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=94.02 E-value=0.66 Score=40.31 Aligned_cols=87 Identities=7% Similarity=0.084 Sum_probs=62.0
Q ss_pred HHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHH
Q 027749 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMI 166 (219)
Q Consensus 91 ~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l 166 (219)
+...+.....+.++||.++++..+..+++.+.+.... ++.+..++|+.+..++...+ ....+|+|+|. .
T Consensus 278 l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~- 350 (579)
T 3sqw_A 278 IKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V- 350 (579)
T ss_dssp HHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-
T ss_pred HHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----h-
Confidence 3334443344567999999999999999999876432 57788888887766553333 24689999994 2
Q ss_pred HcCCCCCCCccEEEeccc
Q 027749 167 KRKTLRTRAIKLLVLDES 184 (219)
Q Consensus 167 ~~~~~~~~~l~~lVvDE~ 184 (219)
-..++++.++++||.-..
T Consensus 351 ~~~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 351 GARGMDFPNVHEVLQIGV 368 (579)
T ss_dssp GTSSCCCTTCCEEEEESC
T ss_pred hhcCCCcccCCEEEEcCC
Confidence 346788889998886654
No 160
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=93.88 E-value=0.066 Score=39.56 Aligned_cols=120 Identities=11% Similarity=0.081 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHhCC--CcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEE
Q 027749 56 PSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (219)
Q Consensus 56 ~~~~Q~~~~~~~~~~--~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~ 133 (219)
..+-|..++..+... +-.+|.++-|++|+...+-.++...... +.++.+++|+..-.....+.. +..-
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--Gr~V~vLAp~~~s~~~l~~~~-------~l~~- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--GREVQIIAADRRSQMNMKQDE-------RLSG- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--TCCEEEECSTTHHHHHHSCTT-------TCSS-
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--CeEEEEEcCchHHHHHHHhhc-------CcCc-
Confidence 456788899888644 3577889999999977655555554444 456999999986654433322 1110
Q ss_pred EEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccchhhhccccHHHHHHHHHhC-CCCCeEEEE
Q 027749 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVCCP 212 (219)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~-~~~~q~i~~ 212 (219)
. ++ |- ..+......+..=+.+|||||..|. ..++..+++.- ..+.|+|++
T Consensus 105 ------------------~-t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naqvvll 155 (189)
T 2l8b_A 105 ------------------E-LI--TG----RRQLLEGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQVLIT 155 (189)
T ss_dssp ------------------C-SS--ST----TTTTTTSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCCEEEE
T ss_pred ------------------c-ee--eh----hhhhcCCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCEEEEe
Confidence 0 00 10 1111222223344489999999877 45556665553 235777776
Q ss_pred ee
Q 027749 213 GS 214 (219)
Q Consensus 213 SA 214 (219)
--
T Consensus 156 ~~ 157 (189)
T 2l8b_A 156 DS 157 (189)
T ss_dssp ES
T ss_pred CC
Confidence 43
No 161
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.79 E-value=0.62 Score=35.13 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=17.4
Q ss_pred CCCcEEEEcCCCCchhHHhHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTV 91 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~ 91 (219)
.|.-+.+.||+|+|||......+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHH
Confidence 45678999999999995544433
No 162
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=93.78 E-value=0.21 Score=36.72 Aligned_cols=90 Identities=12% Similarity=0.175 Sum_probs=51.4
Q ss_pred CCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHH---h-cCCCeEE
Q 027749 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVV 155 (219)
Q Consensus 80 G~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~~~~~I~ 155 (219)
...|- ..+.-++... ..+.++||.++++..+..+.+.+... ++.+..+.|+.+..++... . ....+|+
T Consensus 29 ~~~K~-~~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKR-SFLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHH-HHHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHH-HHHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 45565 3444444432 23456999999999999988888764 5777888887665443222 2 2467899
Q ss_pred EeChHHHHHHHHcCCCCCCCccEEEecc
Q 027749 156 SGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (219)
Q Consensus 156 v~Tp~~l~~~l~~~~~~~~~l~~lVvDE 183 (219)
|+|. . ...++++..+++||.=+
T Consensus 101 vaT~-----~-~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 101 VATA-----V-AARGLDISNVKHVINFD 122 (185)
T ss_dssp EEEC------------CCCSBSEEEESS
T ss_pred EEcC-----h-hhcCCCcccCCEEEEeC
Confidence 9993 2 23566788888877633
No 163
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.71 E-value=0.72 Score=38.92 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=30.5
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEc--CCHHHHHHHHHHHHHhccccceeEEE
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHA 134 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~--P~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (219)
-+++.|++|+|||....- +...+... +.+++++. |.+.-+ .+.+..+....++.+..
T Consensus 102 vIlivG~~G~GKTTt~~k-LA~~l~~~--G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~ 160 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAK-LARYFQKR--GYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFG 160 (443)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHHTT--TCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEEC
T ss_pred EEEEECcCCCCHHHHHHH-HHHHHHHC--CCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEe
Confidence 478899999999955443 33333333 23455544 334433 23344444444555443
No 164
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.67 E-value=0.13 Score=44.60 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.+..+++.||+|+|||...
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999443
No 165
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=93.66 E-value=0.44 Score=39.12 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=54.2
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCC
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (219)
.+.++||.++++..+..+.+.+.+. ++.+..++|+.+..++...+ ....+|+|+|. .+ ..++++.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HH-HTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hh-hcCCCccc
Confidence 4567999999999999998888764 67788888888765553333 24678999994 33 46778888
Q ss_pred ccEEEe
Q 027749 176 IKLLVL 181 (219)
Q Consensus 176 l~~lVv 181 (219)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888775
No 166
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.43 E-value=2.7 Score=34.88 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.4
Q ss_pred CCccCccccCCCCHHHHHHHHHCCCC
Q 027749 29 VEAITSFDAMGIKDDLLRGIYQYGFE 54 (219)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~l~~~~~~ 54 (219)
+.++..++..++++..++.|.+.|+.
T Consensus 80 ~~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 80 FVPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp SCBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred ccCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 44667777788999999999998886
No 167
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=93.28 E-value=0.17 Score=47.99 Aligned_cols=55 Identities=20% Similarity=0.114 Sum_probs=42.9
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccC---------CCceeEEEEcCCHHHHHHHHHHHHHhc
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS---------SREVQALILSPTRELATQTEKVILAIG 125 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~---------~~~~~~lil~P~~~l~~q~~~~~~~~~ 125 (219)
.+.+|.|..|||||.+..--++..+... -...++|+|+=|+.-+.++.+++.+..
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 3559999999999977766666666532 123469999999999999999997654
No 168
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.11 E-value=0.25 Score=37.60 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=24.8
Q ss_pred CCccEEEeccchhhhc-----cccHHHHHHHHHhCCC-CCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLS-----RGFKDQIYDVYRYLPP-DLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~-----~~~~~~~~~i~~~~~~-~~q~i~~S 213 (219)
.+.+++|+||...+++ ......+..+++.+.. +.-+|+.|
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vt 179 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTT 179 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEE
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567899999988775 3444446666665532 33444444
No 169
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.09 E-value=0.66 Score=37.06 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=30.7
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccC---------CCc----eeEEEEcCCHHH-HHHHHHHHHHh
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS---------SRE----VQALILSPTREL-ATQTEKVILAI 124 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~---------~~~----~~~lil~P~~~l-~~q~~~~~~~~ 124 (219)
|.-+++.|++|+|||...+-.+....... ..+ .+++|+.-...+ ..++.+.+..+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 34689999999999954443333322211 111 467777755432 44555555443
No 170
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=92.84 E-value=2.9 Score=33.12 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=30.5
Q ss_pred hHHHHHHHHcCCCCCCCccEEEeccchhhhc---cccHHHHHHHHHhCCCCCeEEEEe
Q 027749 159 PGRVCDMIKRKTLRTRAIKLLVLDESDEMLS---RGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 159 p~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~---~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
...+...+....- .--+||+||+|.+.. ..+...+..+.+..+ +..+|+.+
T Consensus 124 ~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 124 FANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp HHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred HHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 4455555544221 234799999999864 356677777776643 44455444
No 171
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.73 E-value=0.12 Score=43.77 Aligned_cols=139 Identities=15% Similarity=0.117 Sum_probs=64.4
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECC--ccc-----
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGG--KSV----- 141 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~--~~~----- 141 (219)
.|.-++|.|++|+|||. +.+-++..+... +..++|+.-- .-..|+..++.......+..-. ..|. .+.
T Consensus 196 ~G~liiIaG~pG~GKTt-lal~ia~~~a~~--g~~vl~fSlE-ms~~ql~~R~~~~~~~i~~~~l-~~g~~~l~~~~~~~ 270 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTA-FALKQAKNMSDN--DDVVNLHSLE-MGKKENIKRLIVTAGSINAQKI-KAARRDFASEDWGK 270 (444)
T ss_dssp SSCEEEEEECSSSSHHH-HHHHHHHHHHHT--TCEEEEECSS-SCTTHHHHHHHHHHSCCCHHHH-HHTGGGTCCSCHHH
T ss_pred CCcEEEEEeCCCCChHH-HHHHHHHHHHHc--CCEEEEEECC-CCHHHHHHHHHHHHcCCCHHHH-hcccCCCCHHHHHH
Confidence 44568999999999994 444444444333 3347776543 2233444443222111111000 0011 000
Q ss_pred -HHHHHHhcCCCeEEEe-----ChHHHHHHHHcCCCCCCCcc--EEEeccchhhhcc----ccHHHHHHHHHhCC-----
Q 027749 142 -GEDIRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIK--LLVLDESDEMLSR----GFKDQIYDVYRYLP----- 204 (219)
Q Consensus 142 -~~~~~~l~~~~~I~v~-----Tp~~l~~~l~~~~~~~~~l~--~lVvDE~h~l~~~----~~~~~~~~i~~~~~----- 204 (219)
......+. ...+.|- |++.+...+..-.. -..++ +||||-...|... +....+..+.+.+.
T Consensus 271 l~~a~~~l~-~~~l~i~d~~~~s~~~i~~~ir~l~~-~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke 348 (444)
T 3bgw_A 271 LSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQTKR-KNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARE 348 (444)
T ss_dssp HHHHHHHHH-TSCEEEECCSSCBHHHHHHHHHHHHH-HSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 01111221 2345542 45555543332100 12578 9999999877633 22233444433331
Q ss_pred CCCeEEEEee
Q 027749 205 PDLQVCCPGS 214 (219)
Q Consensus 205 ~~~q~i~~SA 214 (219)
.++.++++|.
T Consensus 349 ~~v~vi~lsq 358 (444)
T 3bgw_A 349 LDVVVIALSQ 358 (444)
T ss_dssp HTCEEEEEEE
T ss_pred hCCeEEEEec
Confidence 2667787775
No 172
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=92.57 E-value=0.36 Score=38.50 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=53.7
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
+.++||.++++..+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. . -..++++.++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----v-a~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----V-AARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----T-TTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----h-hhcCccccce
Confidence 346999999999998888877654 67888899987766554333 24678999993 2 2467788888
Q ss_pred cEEEecc
Q 027749 177 KLLVLDE 183 (219)
Q Consensus 177 ~~lVvDE 183 (219)
++||.=+
T Consensus 98 ~~VI~~d 104 (300)
T 3i32_A 98 DLVVHYR 104 (300)
T ss_dssp SEEEESS
T ss_pred eEEEEcC
Confidence 8877533
No 173
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.34 E-value=0.49 Score=40.70 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=28.9
Q ss_pred HHHHHHCCCCCChHHHHHHH-HHHhCCCcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 45 LRGIYQYGFEKPSAIQQRAV-MPIIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~-~~~~~~~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
...|.+.|.. .+.+...+ -.+..|..+++.||||+|||. .+-.++..+
T Consensus 236 ~~~l~~~G~~--~~~~l~~l~~~v~~g~~i~I~GptGSGKTT-lL~aL~~~i 284 (511)
T 2oap_1 236 PIDLIEKGTV--PSGVLAYLWLAIEHKFSAIVVGETASGKTT-TLNAIMMFI 284 (511)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHTTCCEEEEESTTSSHHH-HHHHHGGGS
T ss_pred hhhHHhcCCC--CHHHHHHHHHHHhCCCEEEEECCCCCCHHH-HHHHHHhhC
Confidence 3445566632 23333333 335678899999999999993 334444444
No 174
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.34 E-value=0.8 Score=37.05 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=56.6
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCC
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (219)
...++||.++++..+..+++.+.+. ++.+..++|+.+..++...+ .+..+|+|+|. .-..++++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCccc
Confidence 3467999999999999998888765 56778888887765543333 23678999994 2356788999
Q ss_pred ccEEEeccch
Q 027749 176 IKLLVLDESD 185 (219)
Q Consensus 176 l~~lVvDE~h 185 (219)
+++||.-+..
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9998876554
No 175
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=92.25 E-value=0.92 Score=38.72 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=38.7
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcc
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~ 126 (219)
.+....+.+.+|+||++...- ++.. . +..+|||+|+...|.++++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~---~--~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAER---H--AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHH---S--SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHH---h--CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 456788999999999944322 2222 1 12389999999999999999998864
No 176
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.22 E-value=1.4 Score=32.86 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=25.7
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEE
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (219)
...+++..+.|.|||.+++-..+..+.. +.+++|+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEE
Confidence 3579999999999998777666665544 3447776
No 177
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=92.14 E-value=0.63 Score=42.34 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=26.4
Q ss_pred ccEEEeccchhhhccc----------cHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 176 IKLLVLDESDEMLSRG----------FKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 176 l~~lVvDE~h~l~~~~----------~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
-..+++||+|.+.... ....+..+++.+.....++++.||-++
T Consensus 298 p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~ 350 (806)
T 1ypw_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp SEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCT
T ss_pred CcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCc
Confidence 3579999999877421 223344555555555567777776554
No 178
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.96 E-value=0.46 Score=42.81 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=17.5
Q ss_pred ccEEEeccchhhhccccHHHHHHHHHh
Q 027749 176 IKLLVLDESDEMLSRGFKDQIYDVYRY 202 (219)
Q Consensus 176 l~~lVvDE~h~l~~~~~~~~~~~i~~~ 202 (219)
.++|++||+|.+.. .....+..+++.
T Consensus 580 ~~vl~lDEi~~~~~-~~~~~Ll~~le~ 605 (758)
T 3pxi_A 580 YSVVLLDAIEKAHP-DVFNILLQVLED 605 (758)
T ss_dssp SSEEEEECGGGSCH-HHHHHHHHHHHH
T ss_pred CeEEEEeCccccCH-HHHHHHHHHhcc
Confidence 45899999998643 345555666655
No 179
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.62 E-value=0.51 Score=42.90 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=27.2
Q ss_pred ccEEEeccchhhhcc------c----cHHHHHHHHHhCCCCCeEEEEeecccC
Q 027749 176 IKLLVLDESDEMLSR------G----FKDQIYDVYRYLPPDLQVCCPGSCFLF 218 (219)
Q Consensus 176 l~~lVvDE~h~l~~~------~----~~~~~~~i~~~~~~~~q~i~~SATl~~ 218 (219)
-..|++||+|.+... . ....+...++.+....+++++-||=.+
T Consensus 298 PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~ 350 (806)
T 3cf2_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp SEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSST
T ss_pred CeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCCh
Confidence 357999999988742 1 123344445556566678888887544
No 180
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.53 E-value=0.07 Score=44.98 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=36.3
Q ss_pred CccCccccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 30 EAITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
.+-.+|++.+--..+.+.+.+.- +..|.-++..-+ ...+.+++.||.|+|||+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 45578999988888888887541 123333332222 23468999999999999443
No 181
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=91.30 E-value=1.2 Score=39.00 Aligned_cols=83 Identities=10% Similarity=0.140 Sum_probs=58.7
Q ss_pred HHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHH
Q 027749 91 VCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMI 166 (219)
Q Consensus 91 ~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l 166 (219)
++..+.....+.++||.++++..++++.+.+.+. ++.+..++++.+..++...+ ....+|+|+|..
T Consensus 257 l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a------ 326 (591)
T 2v1x_A 257 IVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA------ 326 (591)
T ss_dssp HHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT------
T ss_pred HHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech------
Confidence 3344433334567999999999999999988764 67888889888766554333 246789999941
Q ss_pred HcCCCCCCCccEEEecc
Q 027749 167 KRKTLRTRAIKLLVLDE 183 (219)
Q Consensus 167 ~~~~~~~~~l~~lVvDE 183 (219)
-..++++.++++||.=.
T Consensus 327 ~~~GID~p~V~~VI~~~ 343 (591)
T 2v1x_A 327 FGMGIDKPDVRFVIHHS 343 (591)
T ss_dssp SCTTCCCSCEEEEEESS
T ss_pred hhcCCCcccccEEEEeC
Confidence 24567888888877543
No 182
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.25 E-value=1 Score=37.55 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=53.2
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCccEE
Q 027749 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (219)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~l 179 (219)
+||.++++..+..+.+.+.+. ++.+..++|+.+..++...+ .....|+|+|. +-.+++++.++++|
T Consensus 303 ~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~V 372 (434)
T 2db3_A 303 TIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKHV 372 (434)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCEE
T ss_pred EEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCEE
Confidence 999999999999988888764 67788888887766554333 23678999995 23577899999988
Q ss_pred Eec
Q 027749 180 VLD 182 (219)
Q Consensus 180 VvD 182 (219)
|.=
T Consensus 373 I~~ 375 (434)
T 2db3_A 373 INY 375 (434)
T ss_dssp EES
T ss_pred EEE
Confidence 753
No 183
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.06 E-value=0.2 Score=45.82 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
++++++||+|+|||...
T Consensus 192 ~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCEEEECTTSCHHHHH
T ss_pred CceEEEcCCCCCHHHHH
Confidence 57999999999999443
No 184
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.96 E-value=0.66 Score=37.89 Aligned_cols=72 Identities=17% Similarity=0.144 Sum_probs=54.5
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCcc
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~ 177 (219)
.++||.++++..+..+.+.+.+. ++.+..++|+.+..++...+ .+..+|+|+|. . -..++++.+++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~~~ 336 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQVS 336 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCTTEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCccCCC
Confidence 57999999999999999988765 56778888887766554333 24678999994 2 35678889999
Q ss_pred EEEecc
Q 027749 178 LLVLDE 183 (219)
Q Consensus 178 ~lVvDE 183 (219)
+||.-.
T Consensus 337 ~Vi~~~ 342 (412)
T 3fht_A 337 VVINFD 342 (412)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 888533
No 185
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=90.74 E-value=0.92 Score=36.97 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=53.1
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
..++||.++++..+..+.+.+.+. ++.+..++|+.+..++...+ ....+|+|+|. .-..++++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCC
Confidence 357999999999999999888765 56777888887765543332 23578999994 12456788888
Q ss_pred cEEEecc
Q 027749 177 KLLVLDE 183 (219)
Q Consensus 177 ~~lVvDE 183 (219)
++||.-+
T Consensus 328 ~~Vi~~~ 334 (400)
T 1s2m_A 328 NVVINFD 334 (400)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 8877543
No 186
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=90.66 E-value=0.45 Score=38.44 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=26.9
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHH
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~ 114 (219)
-+++.+|.|+|||...+-. +........+.+++|+..-..+-
T Consensus 30 iteI~G~pGsGKTtL~Lq~-~~~~~~~g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTM-VSSYMRQYPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHH-HHHHHHHCTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHH-HHHHHhcCCCceEEEEeccchhh
Confidence 5789999999999554443 33333322244688887766553
No 187
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=90.55 E-value=0.56 Score=36.19 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.2
Q ss_pred hCCCcEEEEcCCCCchhHHh
Q 027749 68 IKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~ 87 (219)
..+.++++.|++|+|||...
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 35678999999999999433
No 188
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=90.23 E-value=0.49 Score=35.67 Aligned_cols=52 Identities=12% Similarity=0.123 Sum_probs=31.1
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHhCC----CcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 41 KDDLLRGIYQYGFEKPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~Q~~~~~~~~~~----~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
...+.+-|.-.++ .+..+ ...+..+.++ +.+++.||.|+|||..+ ..++..+
T Consensus 27 w~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 27 WRPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp SHHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 3456666665554 34444 4445555544 35999999999999443 4444443
No 189
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.13 E-value=0.48 Score=47.21 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=28.0
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
.++++++.+|+|+|||......+.... .. +.+++|+.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~-~~--G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ-RE--GKTCAFIDAEHAL 1467 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH-TT--TCCEEEECTTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCcEEEEEccccc
Confidence 367899999999999965544333322 22 4458888766544
No 190
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.10 E-value=0.55 Score=38.19 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
...++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999544
No 191
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=90.08 E-value=0.98 Score=36.98 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=53.7
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCcc
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~ 177 (219)
.++||.++++..+..+.+.+.+. ++.+..++|+.+..++...+ .+..+|+|+|. .-..++++.+++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccCC
Confidence 47999999999999988888764 56788888887765543332 23678999995 235678899999
Q ss_pred EEEecc
Q 027749 178 LLVLDE 183 (219)
Q Consensus 178 ~lVvDE 183 (219)
+||.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 887543
No 192
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.06 E-value=0.11 Score=41.41 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=31.5
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCChHHHHHHHH-HHhCCCcEEEEcCCCCchhHHh
Q 027749 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~-~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
-.+|+++.-...+.+.+.+.- ..|......... .+..++.+++.||+|+|||...
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELV-QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH-HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH-HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 356888876777777776531 001000000111 1234578999999999999443
No 193
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=89.96 E-value=1.2 Score=36.88 Aligned_cols=96 Identities=19% Similarity=0.184 Sum_probs=60.6
Q ss_pred CCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEEC--------CcccHHHHHHh--
Q 027749 79 SGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG--------GKSVGEDIRKL-- 148 (219)
Q Consensus 79 tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l-- 148 (219)
..++|. ..+..++........+.++||.++++..+..+.+.+... ++.+..+.| +.+..++...+
T Consensus 340 ~~~~k~-~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~ 414 (494)
T 1wp9_A 340 LDHPKM-DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDE 414 (494)
T ss_dssp CSCHHH-HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHH
T ss_pred CCChHH-HHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHH
Confidence 344555 333444444332233567999999999999988888765 677777887 44443332222
Q ss_pred --cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccch
Q 027749 149 --EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (219)
Q Consensus 149 --~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h 185 (219)
...+.|+|+|. . -..++++..+.+||+-+..
T Consensus 415 F~~~~~~vLv~T~-----~-~~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 415 FARGEFNVLVATS-----V-GEEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHTSCSEEEECG-----G-GGGGGGSTTCCEEEESSCC
T ss_pred HhcCCceEEEECC-----c-cccCCCchhCCEEEEeCCC
Confidence 23578999993 2 2456788889988866554
No 194
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.86 E-value=0.76 Score=47.17 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHH---HHHHhCCCcEEEEcCCCCchhHHhHHHH--HhhhccCCCceeEEEEcCCHHH
Q 027749 40 IKDDLLRGIYQYGFEKPSAIQ-QRA---VMPIIKGRDVIAQAQSGTGKTSMIALTV--CQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 40 l~~~~~~~l~~~~~~~~~~~Q-~~~---~~~~~~~~~~lv~~~tG~GKT~~~~~~~--~~~~~~~~~~~~~lil~P~~~l 113 (219)
+...+.+.+.+.++. +.+.+ .++ ...+...+.+++.||||+|||.++-..+ +..+. +......++-|..--
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~--~~~~~~~~inpk~~t 966 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFD--GHANVVYVIDTKVLT 966 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEEEECTTTSC
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhc--CCCceEEEeCCCCCC
Confidence 345566777777774 55544 222 2334567889999999999997764422 22222 223445556564333
Q ss_pred HHH
Q 027749 114 ATQ 116 (219)
Q Consensus 114 ~~q 116 (219)
..+
T Consensus 967 ~~e 969 (2695)
T 4akg_A 967 KES 969 (2695)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 195
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.85 E-value=1.5 Score=45.81 Aligned_cols=75 Identities=16% Similarity=0.149 Sum_probs=44.8
Q ss_pred CHHHHHHHHHCCCCCChHHH-HHHH---HHHhCCCcEEEEcCCCCchhHHhHHHH--HhhhccCCCceeEEEEcCCHHHH
Q 027749 41 KDDLLRGIYQYGFEKPSAIQ-QRAV---MPIIKGRDVIAQAQSGTGKTSMIALTV--CQTVDTSSREVQALILSPTRELA 114 (219)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~Q-~~~~---~~~~~~~~~lv~~~tG~GKT~~~~~~~--~~~~~~~~~~~~~lil~P~~~l~ 114 (219)
...+.+.+.+.|+. |.+.+ .+++ ..+...+.++++||||+|||.++-... +..+. +......++-|----.
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~--~~~~~~~~iNPKait~ 950 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVD--NIKSEAHVMDPKAITK 950 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTT--TCEEEEEEECTTTSCH
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhh--CCCceEEEECCCCCch
Confidence 45566677788874 55544 3333 334456789999999999998775422 22221 2234455667765555
Q ss_pred HHHH
Q 027749 115 TQTE 118 (219)
Q Consensus 115 ~q~~ 118 (219)
.|++
T Consensus 951 ~eLy 954 (3245)
T 3vkg_A 951 DQLF 954 (3245)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 5555
No 196
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=89.39 E-value=1.4 Score=37.89 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=54.1
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
+.++||.++++..++.+.+.+.+. ++.+..++|+.+..++.... ....+|+|+|.. -..++++.++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a------~~~GiD~p~v 305 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA------FGMGINKPNV 305 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT------SCTTTCCTTC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech------hhCCCCccCc
Confidence 446999999999999999988765 67788888888765543332 246789999951 2456788888
Q ss_pred cEEEecc
Q 027749 177 KLLVLDE 183 (219)
Q Consensus 177 ~~lVvDE 183 (219)
++||.-.
T Consensus 306 ~~VI~~~ 312 (523)
T 1oyw_A 306 RFVVHFD 312 (523)
T ss_dssp CEEEESS
T ss_pred cEEEEEC
Confidence 8887644
No 197
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.35 E-value=1.4 Score=35.73 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=54.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
+.++||.++++..+..+.+.+.+. ++.+..++|+.+..++...+ .....|+|+|. . -..++++..+
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gidi~~~ 319 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGMDIERV 319 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----C-CSSCBCCTTE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----h-hhcCCCcccC
Confidence 457999999999999998888764 56778888887765543332 23678999994 1 2456788889
Q ss_pred cEEEeccc
Q 027749 177 KLLVLDES 184 (219)
Q Consensus 177 ~~lVvDE~ 184 (219)
++||.-+.
T Consensus 320 ~~Vi~~~~ 327 (391)
T 1xti_A 320 NIAFNYDM 327 (391)
T ss_dssp EEEEESSC
T ss_pred CEEEEeCC
Confidence 88887554
No 198
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.33 E-value=0.27 Score=41.14 Aligned_cols=19 Identities=26% Similarity=0.648 Sum_probs=16.3
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
...+++|.|+||+|||...
T Consensus 52 ~~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH
T ss_pred CcceEEEECCCCCCHHHHH
Confidence 4568999999999999764
No 199
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.13 E-value=1 Score=35.24 Aligned_cols=18 Identities=22% Similarity=0.542 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
.+++++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 568999999999999443
No 200
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=89.09 E-value=0.61 Score=40.01 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=26.4
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhH
Q 027749 44 LLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTS 85 (219)
Q Consensus 44 ~~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~ 85 (219)
+.+.+... +..-...-..+...+..+.++++.||+|+|||.
T Consensus 16 l~~~l~~~-ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 16 LSSSLEKG-LYERSHAIRLCLLAALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp HHHHHHTT-CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHH
T ss_pred HHHHHHhh-hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHH
Confidence 34444433 323333334455556788999999999999993
No 201
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.95 E-value=0.58 Score=35.11 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=26.4
Q ss_pred CChHHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
.-+.-|..++..+..|.-+.+.||.|+|||...
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 335557778888888888999999999999543
No 202
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.93 E-value=0.22 Score=35.80 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
.+++++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999543
No 203
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.93 E-value=0.83 Score=38.23 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=21.3
Q ss_pred HHHHHHHHh--CCCcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 60 QQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 60 Q~~~~~~~~--~~~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
+..++..+. .+.-++|.||||+|||.. +-.++..+
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 344444433 344588999999999943 33344444
No 204
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=88.55 E-value=0.078 Score=38.33 Aligned_cols=74 Identities=11% Similarity=0.144 Sum_probs=48.7
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc----CCCeEEEeChHHHHHHHHcCCCCCCC
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRA 175 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (219)
.+.++||.++++..+..+.+.+... ++.+..++|+.+..++...+. ...+|+|+|. .+ ..++++..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~ 98 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VA-ARGIDIPD 98 (170)
Confidence 3457999999999998888877654 567777777766544433321 3567999983 22 34556666
Q ss_pred ccEEEecc
Q 027749 176 IKLLVLDE 183 (219)
Q Consensus 176 l~~lVvDE 183 (219)
+++||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 66665533
No 205
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.84 E-value=2.8 Score=34.00 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=13.9
Q ss_pred CCccEEEeccchhhhcc
Q 027749 174 RAIKLLVLDESDEMLSR 190 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~ 190 (219)
.+.++||+||.-.+++.
T Consensus 230 ~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp SCEEEEEEETSSTTHHH
T ss_pred CCCCEEEEeCchHhhhh
Confidence 56889999999887754
No 206
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.78 E-value=0.24 Score=41.26 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=33.3
Q ss_pred ccCccccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 31 AITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
|--+|++.+=-....+.+++.- +..|.-++..- +...+.+++.||.|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 3467888876677777776542 11222222211 223468999999999999443
No 207
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.76 E-value=0.54 Score=38.46 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=16.8
Q ss_pred HhCCCcEEEEcCCCCchhH
Q 027749 67 IIKGRDVIAQAQSGTGKTS 85 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~ 85 (219)
+..|..+++.||||+|||.
T Consensus 172 i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH
T ss_pred HhcCCEEEEECCCCCCHHH
Confidence 4578899999999999994
No 208
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.71 E-value=0.95 Score=35.44 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=30.2
Q ss_pred CHHHHHHHHHCCCCCChHHHHH-HHHHHhCCC-----cEEEEcCCCCchhHHhH
Q 027749 41 KDDLLRGIYQYGFEKPSAIQQR-AVMPIIKGR-----DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 41 ~~~~~~~l~~~~~~~~~~~Q~~-~~~~~~~~~-----~~lv~~~tG~GKT~~~~ 88 (219)
...+.+.|+..|+. |.+.. ++..+++++ .+++.||.|+|||+.+.
T Consensus 72 ~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34688888887763 43422 344455443 49999999999995554
No 209
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=88.22 E-value=1.6 Score=38.77 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=57.2
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh---c-CCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
+.++||.++++..+..+.+.+.+. ++.+..++|+.+..++...+ . +..+|+|+|. . ...++++.++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~-l~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----L-LREGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----C-CSTTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----h-hhCCcccCCC
Confidence 457999999999999988888765 56777778777655543332 2 4678999984 1 2567889999
Q ss_pred cEEEeccchh
Q 027749 177 KLLVLDESDE 186 (219)
Q Consensus 177 ~~lVvDE~h~ 186 (219)
+++|+-+++.
T Consensus 515 ~lVi~~d~d~ 524 (661)
T 2d7d_A 515 SLVAILDADK 524 (661)
T ss_dssp EEEEETTTTC
T ss_pred CEEEEeCccc
Confidence 9999988864
No 210
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.15 E-value=0.18 Score=42.58 Aligned_cols=54 Identities=24% Similarity=0.377 Sum_probs=32.4
Q ss_pred ccCccccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 31 AITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
+--+|++.+=-....+.+.+.- +..|.-++..- +...+.+++.||.|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 4457888876667776665431 11222222111 123468999999999999443
No 211
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.65 E-value=0.25 Score=41.93 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=33.8
Q ss_pred ccCccccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 31 AITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
|--+|++.+=-..+.+.|++.- +..|.-++..- +...+.+++.||.|+|||+.+
T Consensus 204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHH
Confidence 4467888887777888887542 11222222111 123468999999999999443
No 212
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=87.60 E-value=1.5 Score=35.03 Aligned_cols=74 Identities=12% Similarity=0.223 Sum_probs=52.9
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
+.++||.++++..+..+.+.+.+. ++.+..++|+.+..++...+ .+..+|+|+|. .+ ..++++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VM-SRGIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----TH-HHHCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCCcccC
Confidence 456999999999999998888765 56778888887765543332 24678999994 22 235677888
Q ss_pred cEEEeccc
Q 027749 177 KLLVLDES 184 (219)
Q Consensus 177 ~~lVvDE~ 184 (219)
++||.-+.
T Consensus 308 ~~Vi~~~~ 315 (367)
T 1hv8_A 308 NCVINYHL 315 (367)
T ss_dssp SEEEESSC
T ss_pred CEEEEecC
Confidence 88876443
No 213
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.37 E-value=0.3 Score=39.08 Aligned_cols=24 Identities=21% Similarity=0.399 Sum_probs=18.8
Q ss_pred HHHHhCCCcEEEEcCCCCchhHHh
Q 027749 64 VMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 64 ~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
...+..++++++.||+|+|||...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 344556889999999999999443
No 214
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=87.37 E-value=1.4 Score=36.96 Aligned_cols=67 Identities=4% Similarity=-0.001 Sum_probs=46.3
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh-cCCCeEEEeChHHHHHHHHcCCCCCCCccEEE
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lV 180 (219)
.++||.+|++.-+..+++.+.+. ++++..++|.. ........ .+..+|+|+|. . -..++++. +++||
T Consensus 178 ~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~-----v-~e~GiDip-v~~VI 245 (440)
T 1yks_A 178 RPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKT-FEREYPTIKQKKPDFILATD-----I-AEMGANLC-VERVL 245 (440)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSS-CC--------CCCSEEEESS-----S-TTCCTTCC-CSEEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchh-HHHHHhhhcCCCceEEEECC-----h-hheeeccC-ceEEE
Confidence 56999999999999999988775 57777888733 22223333 24679999994 2 24677888 88877
No 215
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.30 E-value=0.23 Score=41.75 Aligned_cols=54 Identities=22% Similarity=0.230 Sum_probs=32.0
Q ss_pred ccCccccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 31 AITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
+-.+|++.+=-..+.+.+.+.- +..|.-++..- +...+.+++.||.|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 3457888876666666665431 11222222111 123467999999999999443
No 216
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=87.28 E-value=0.33 Score=35.30 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999544
No 217
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=87.15 E-value=1.2 Score=35.23 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchhHHhHH
Q 027749 70 GRDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~ 89 (219)
++-+++.|++|+|||.....
T Consensus 105 g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999955443
No 218
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=87.00 E-value=1.1 Score=35.70 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.+.++++.|++|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999443
No 219
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.93 E-value=0.63 Score=37.58 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=16.7
Q ss_pred HhCCCcEEEEcCCCCchhH
Q 027749 67 IIKGRDVIAQAQSGTGKTS 85 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~ 85 (219)
+..|..+.+.||+|+|||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4578899999999999994
No 220
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.86 E-value=2.7 Score=40.41 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=29.5
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
++=+.+|+||+---+|..-+..+...++...+++-+|..+
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 3456899999987777766778888888876666565543
No 221
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.64 E-value=0.37 Score=35.59 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=16.6
Q ss_pred hCCCcEEEEcCCCCchhHHhH
Q 027749 68 IKGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~~ 88 (219)
..++.+++.|++|+|||...-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 356789999999999995543
No 222
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.62 E-value=0.36 Score=35.78 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999544
No 223
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=86.57 E-value=1 Score=38.72 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=18.9
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhh
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTV 95 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~ 95 (219)
.+.+++|.|+||+|||.+.-..+...+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999955433333333
No 224
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.43 E-value=3.6 Score=32.44 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 027749 70 GRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~ 88 (219)
++-+.+.++.|+|||....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SEEEEEECCTTTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3456788999999995443
No 225
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=86.07 E-value=2.9 Score=37.87 Aligned_cols=75 Identities=17% Similarity=0.146 Sum_probs=54.7
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhc-------cccceeEEEEECCcccHHHHHHhc---------CCCeEEEeChHHHHH
Q 027749 101 EVQALILSPTRELATQTEKVILAIG-------DFINIQAHACVGGKSVGEDIRKLE---------HGVHVVSGTPGRVCD 164 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~I~v~Tp~~l~~ 164 (219)
+..+||.+|++.-+..+.+.+.+.. ...++.+..++|+.+..++...+. +...|+|+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 4579999999999999999887532 224788889999988776644432 2468999994
Q ss_pred HHHcCCCCCCCccEEEe
Q 027749 165 MIKRKTLRTRAIKLLVL 181 (219)
Q Consensus 165 ~l~~~~~~~~~l~~lVv 181 (219)
.+ ..++++.++.+||-
T Consensus 378 ia-e~GidIp~v~~VId 393 (773)
T 2xau_A 378 IA-ETSLTIDGIVYVVD 393 (773)
T ss_dssp HH-HHTCCCTTEEEEEE
T ss_pred HH-HhCcCcCCeEEEEe
Confidence 22 35678888887663
No 226
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=86.06 E-value=1.9 Score=36.64 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=54.5
Q ss_pred CchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEEC--------CcccHHHH---HHhc
Q 027749 81 TGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG--------GKSVGEDI---RKLE 149 (219)
Q Consensus 81 ~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~---~~l~ 149 (219)
++|. ..+..++..........++||.++++..+..+.+.+........+.+..+.| +.+..++. ....
T Consensus 370 ~~k~-~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 370 NPKL-RDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CHHH-HHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CHHH-HHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 4555 3334444444333345679999999999999999998764333344444443 43333332 2222
Q ss_pred --CCCeEEEeChHHHHHHHHcCCCCCCCccEEEecc
Q 027749 150 --HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (219)
Q Consensus 150 --~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE 183 (219)
+..+|+|+|. . -..++++..+++||.=+
T Consensus 449 ~~g~~~vLvaT~-----~-~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 449 ASGDNNILIATS-----V-ADEGIDIAECNLVILYE 478 (555)
T ss_dssp ---CCSEEEECC-----C-TTCCEETTSCSEEEEES
T ss_pred cCCCeeEEEEcc-----h-hhcCCccccCCEEEEeC
Confidence 3578999994 1 24678888888877533
No 227
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.05 E-value=0.36 Score=35.77 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.2
Q ss_pred HhCCCcEEEEcCCCCchhHHh
Q 027749 67 IIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~ 87 (219)
+..++-++++||+|+|||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456778999999999999544
No 228
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.04 E-value=0.4 Score=36.75 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=27.4
Q ss_pred CccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 33 TSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 33 ~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
.+|+++.=...+.+.+.+.- +..|..+... .+...+.+++.||+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 35666655566666554321 1111111111 1123467999999999999443
No 229
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=85.85 E-value=0.37 Score=37.82 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=30.8
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH-hCCCcEEEEcCCCCchhHHh
Q 027749 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQ-RAVMPI-IKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~-~~~~~~-~~~~~~lv~~~tG~GKT~~~ 87 (219)
..+|+++.=...+.+.+.+.-. .+... +.+..+ ..++.+++.||+|+|||...
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4568887667777777765310 11000 000011 13578999999999999544
No 230
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.75 E-value=0.43 Score=37.19 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.4
Q ss_pred HhCCCcEEEEcCCCCchhHH
Q 027749 67 IIKGRDVIAQAQSGTGKTSM 86 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~ 86 (219)
+..|.-+.+.||+|+|||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45677799999999999944
No 231
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=85.43 E-value=0.47 Score=38.56 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhHHhH
Q 027749 71 RDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~ 88 (219)
+-++|.||||+|||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999994443
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.40 E-value=0.18 Score=39.60 Aligned_cols=53 Identities=13% Similarity=0.270 Sum_probs=27.8
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHH--hCCCcEEEEcCCCCchhHHh
Q 027749 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMPI--IKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q-~~~~~~~--~~~~~~lv~~~tG~GKT~~~ 87 (219)
-.+|++.+-...+.+.+.+.-. +|+. ..++..+ .-.+.+++.||.|+|||...
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 4578888777777777765311 2221 1233322 12245999999999999443
No 233
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.36 E-value=0.45 Score=34.41 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 027749 70 GRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~ 88 (219)
.+.+++.|++|+|||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999995543
No 234
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.29 E-value=0.38 Score=34.73 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=16.8
Q ss_pred hCCCcEEEEcCCCCchhHHhH
Q 027749 68 IKGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~~ 88 (219)
..++.+++.|+.|+|||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999995543
No 235
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.07 E-value=2.1 Score=34.85 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
..+++++||+|+|||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999544
No 236
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.02 E-value=1.1 Score=36.73 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=29.2
Q ss_pred CccEEEeccchhhhc---cccHHHHHHHHHhCCC-CCeEEEEeecc
Q 027749 175 AIKLLVLDESDEMLS---RGFKDQIYDVYRYLPP-DLQVCCPGSCF 216 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~---~~~~~~~~~i~~~~~~-~~q~i~~SATl 216 (219)
.-.++|+||+|.++. ..+...+..+++..++ +.-+++.|..+
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~ 307 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNV 307 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCH
Confidence 356899999999985 3355667777777655 55566666544
No 237
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=84.94 E-value=0.65 Score=34.54 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566889999999999544
No 238
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=84.81 E-value=0.56 Score=38.36 Aligned_cols=18 Identities=22% Similarity=0.405 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCCchhHH
Q 027749 69 KGRDVIAQAQSGTGKTSM 86 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~ 86 (219)
.+..++|.||||+|||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999943
No 239
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=84.74 E-value=0.53 Score=33.77 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
++-+++.|++|+|||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999554
No 240
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.73 E-value=0.54 Score=34.69 Aligned_cols=17 Identities=35% Similarity=0.776 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
+.++++||.|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999543
No 241
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.72 E-value=5.7 Score=31.93 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+.-+.+.||+|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345789999999999543
No 242
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=84.65 E-value=0.43 Score=38.65 Aligned_cols=18 Identities=50% Similarity=0.815 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
++.+++.||+|+|||...
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 357999999999999544
No 243
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.45 E-value=0.47 Score=36.44 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=28.9
Q ss_pred cCccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 32 ITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
..+|+++.-.+.+.+.+.+.- +..+..++.. .....+.+++.||+|+|||...
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 356888776777766665420 0011100000 0112357999999999999443
No 244
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=84.34 E-value=0.9 Score=37.14 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=45.5
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh---c-CCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
..++||.++++..+..+.+.+.+. ++.+..++|+.+..++...+ . +..+|+|+|. . -..++++.++
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip~v 349 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----L-LARGIDVQQV 349 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----S-CC--CCGGGC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----c-cccCCCccCC
Confidence 346999999999999888877654 57777888887765543333 2 3578999994 1 2356777778
Q ss_pred cEEEecc
Q 027749 177 KLLVLDE 183 (219)
Q Consensus 177 ~~lVvDE 183 (219)
++||.-+
T Consensus 350 ~~Vi~~~ 356 (414)
T 3eiq_A 350 SLVINYD 356 (414)
T ss_dssp SCEEESS
T ss_pred CEEEEeC
Confidence 8776533
No 245
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.24 E-value=0.32 Score=40.90 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=33.7
Q ss_pred CccCccccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
.+-.+|++.+=-..+.+.+.+. -+..|.-++..-+ ...+.+++.||.|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 3446899987566666666543 1223333332222 22467999999999999443
No 246
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=84.21 E-value=1.8 Score=40.96 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=59.0
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
+.+++|++++..-+..+.+.+.+... +.++..++|+.+..++...+ .+..+|+|+|. +-..++++.++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~------v~e~GiDip~v 883 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPTA 883 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGGSCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC------cceeeecccCC
Confidence 45799999999999999999987643 46777888887765543222 34689999994 23467899999
Q ss_pred cEEEeccchh
Q 027749 177 KLLVLDESDE 186 (219)
Q Consensus 177 ~~lVvDE~h~ 186 (219)
++||+..++.
T Consensus 884 ~~VIi~~~~~ 893 (1151)
T 2eyq_A 884 NTIIIERADH 893 (1151)
T ss_dssp EEEEETTTTS
T ss_pred cEEEEeCCCC
Confidence 9999887764
No 247
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=84.00 E-value=0.54 Score=34.57 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.2
Q ss_pred hCCCcEEEEcCCCCchhHHh
Q 027749 68 IKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~ 87 (219)
..|.-+.+.||.|+|||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999544
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=83.94 E-value=0.52 Score=33.34 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
-++++|++|+|||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999544
No 249
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=83.88 E-value=0.6 Score=33.97 Aligned_cols=19 Identities=47% Similarity=0.749 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.+..+++.|++|+|||...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999554
No 250
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=83.85 E-value=3.4 Score=36.63 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=56.0
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHH---hc-CCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---LE-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
+.++||.++++..+..+.+.+.+. ++.+..++|+.+..++... +. +..+|+|+|. . ...++++..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~-l~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----L-LREGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----C-CCTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----h-hhcCccCCCC
Confidence 457999999999999988888765 5677777777765554333 22 3578999983 1 2467888899
Q ss_pred cEEEeccchh
Q 027749 177 KLLVLDESDE 186 (219)
Q Consensus 177 ~~lVvDE~h~ 186 (219)
+++|+=+++.
T Consensus 509 ~lVI~~d~d~ 518 (664)
T 1c4o_A 509 SLVAILDADK 518 (664)
T ss_dssp EEEEETTTTS
T ss_pred CEEEEeCCcc
Confidence 9988877754
No 251
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=83.80 E-value=1.6 Score=38.09 Aligned_cols=41 Identities=15% Similarity=0.314 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccC-CCceeEEEEcCC
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPT 110 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~-~~~~~~lil~P~ 110 (219)
..+++|.|.||+|||.+.-..++..+... ....+.+++=|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 46899999999999955444444444332 334455555454
No 252
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=83.79 E-value=0.37 Score=35.07 Aligned_cols=21 Identities=19% Similarity=0.466 Sum_probs=16.5
Q ss_pred HhCCCcEEEEcCCCCchhHHh
Q 027749 67 IIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~ 87 (219)
+..|.-+++.||.|+|||...
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 345667899999999999543
No 253
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=83.59 E-value=0.75 Score=37.03 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.1
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
-++|.||||+|||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 4688999999999444
No 254
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.57 E-value=0.42 Score=36.68 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=30.4
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh--CCCcEEEEcCCCCchhHHh
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~~tG~GKT~~~ 87 (219)
+-.+|+++.-.+.....++..... . -....+..+. -.+.+++.||+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 446788877666666666543110 0 0112232221 1245999999999999433
No 255
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.54 E-value=0.54 Score=37.71 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=30.9
Q ss_pred cCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh-----CCCcEEEEcCCCCchhHHh
Q 027749 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII-----KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~-----~~~~~lv~~~tG~GKT~~~ 87 (219)
-.+|+++.=...+.+.+.+.-. +|.+ .|.+. ..+.+++.||+|+|||...
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 3578888777777777764310 1111 11221 2367999999999999443
No 256
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.43 E-value=1.2 Score=33.63 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~ 123 (219)
|.-+++.|++|+|||...+--+.+.+..... .++|+.-. .-..++...+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~--~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE--PGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC--CEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC--Cceeeccc-CCHHHHHHHHHH
Confidence 4568999999999994433323333333222 25665433 334455555543
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=83.14 E-value=0.7 Score=32.92 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+..+.+.|+.|+|||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999543
No 258
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.09 E-value=0.69 Score=38.00 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.1
Q ss_pred HhCCCcEEEEcCCCCchhHH
Q 027749 67 IIKGRDVIAQAQSGTGKTSM 86 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~ 86 (219)
+..|..+++.||||+|||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34566799999999999944
No 259
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=83.02 E-value=10 Score=32.02 Aligned_cols=74 Identities=8% Similarity=0.005 Sum_probs=48.6
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCccE
Q 027749 103 QALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (219)
Q Consensus 103 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~ 178 (219)
..++++....-+..+.+.+.+. +.++..+.|+.+..++...+ .+..+|+|+|+..+. .++++.++.+
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~-----~GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS-----TGISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH-----HSCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh-----cccccccCcE
Confidence 3455555566666666666543 34777788877755443222 346789999964333 5678999999
Q ss_pred EEeccch
Q 027749 179 LVLDESD 185 (219)
Q Consensus 179 lVvDE~h 185 (219)
||+....
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9998887
No 260
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=82.99 E-value=0.68 Score=33.99 Aligned_cols=19 Identities=47% Similarity=0.623 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|.-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5667889999999999544
No 261
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.94 E-value=0.73 Score=34.64 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.1
Q ss_pred hCCCcEEEEcCCCCchhHHh
Q 027749 68 IKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~ 87 (219)
..|+-+.+.||+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46778999999999999443
No 262
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=82.94 E-value=5 Score=38.65 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=27.8
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
++-+.+|+||+---+|..-+..+...++.+.++.-+|+.+
T Consensus 571 ~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 5667899999987777765667777776655555455443
No 263
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.93 E-value=0.53 Score=37.19 Aligned_cols=17 Identities=18% Similarity=0.010 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999443
No 264
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=82.81 E-value=0.59 Score=36.10 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchhHHhH
Q 027749 72 DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~ 88 (219)
-+++.||+|+|||....
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36899999999995543
No 265
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=82.77 E-value=0.94 Score=33.73 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|+-+++.||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5778899999999999543
No 266
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.73 E-value=0.75 Score=34.48 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.++-+++.||||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566899999999999443
No 267
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=82.71 E-value=3.4 Score=36.75 Aligned_cols=68 Identities=6% Similarity=0.011 Sum_probs=47.8
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc-CCCeEEEeChHHHHHHHHcCCCCCCCccEE
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~l 179 (219)
+.++||.+|++.-++.+++.+.+. ++++..++|. .......... ...+|+|+|. . -..++++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v-~e~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----I-SEMGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----G-GGTTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----h-hhcceeeC-CcEE
Confidence 356999999999999888888764 6778888874 2222222332 4678999994 2 24667888 8876
Q ss_pred E
Q 027749 180 V 180 (219)
Q Consensus 180 V 180 (219)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 268
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=82.37 E-value=0.71 Score=37.57 Aligned_cols=18 Identities=22% Similarity=0.427 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
.+.+++.||+|+|||..+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999544
No 269
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.26 E-value=0.68 Score=37.19 Aligned_cols=16 Identities=19% Similarity=0.434 Sum_probs=13.1
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
-++|.||||+|||...
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3788999999999444
No 270
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=82.09 E-value=2.6 Score=35.09 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHh---CCCcEEEEcCCCCchhHHh
Q 027749 55 KPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~---~~~~~lv~~~tG~GKT~~~ 87 (219)
.|-..-.+++..+. .|..+.+.+|+|+|||...
T Consensus 156 ~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 156 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp CTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred CcccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 35555566776654 7889999999999999544
No 271
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=82.02 E-value=0.8 Score=33.34 Aligned_cols=17 Identities=35% Similarity=0.776 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999544
No 272
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=81.88 E-value=2.4 Score=37.45 Aligned_cols=91 Identities=13% Similarity=0.141 Sum_probs=48.5
Q ss_pred HHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEEC--------CcccHHHHH---Hhc--CCCeE
Q 027749 88 ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG--------GKSVGEDIR---KLE--HGVHV 154 (219)
Q Consensus 88 ~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---~l~--~~~~I 154 (219)
+..++........+.++||.++++..+..+.+.+........+++..++| +.+..++.. ... +..+|
T Consensus 385 L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~v 464 (696)
T 2ykg_A 385 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNI 464 (696)
T ss_dssp HHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSC
T ss_pred HHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccE
Confidence 33344433323345679999999999999999998764333356665544 444333322 222 35789
Q ss_pred EEeChHHHHHHHHcCCCCCCCccEEEeccc
Q 027749 155 VSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (219)
Q Consensus 155 ~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~ 184 (219)
+|+|. +-..++++.++++||.=+.
T Consensus 465 LVaT~------v~~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 465 LIATS------VADEGIDIAQCNLVILYEY 488 (696)
T ss_dssp SEEEE------SSCCC---CCCSEEEEESC
T ss_pred EEEec------hhhcCCcCccCCEEEEeCC
Confidence 99993 1246788888888776444
No 273
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=81.87 E-value=1.2 Score=36.51 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=17.6
Q ss_pred HHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 64 ~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
+..+++|.| ++.-|+||+|||...
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 344567876 667799999999544
No 274
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.67 E-value=0.7 Score=38.99 Aligned_cols=19 Identities=42% Similarity=0.699 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 027749 70 GRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~ 88 (219)
++++++.||+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999995543
No 275
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=81.63 E-value=0.94 Score=33.52 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCCchhHHhHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~ 89 (219)
.|.-+++.|++|+|||.....
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456689999999999954433
No 276
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.58 E-value=1.1 Score=35.13 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36999999999999544
No 277
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=81.44 E-value=0.83 Score=34.53 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=16.2
Q ss_pred HhCCCcEEEEcCCCCchhHHh
Q 027749 67 IIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~ 87 (219)
+..|.-+++.||.|+|||...
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 456778999999999999543
No 278
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.31 E-value=0.82 Score=32.99 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+..+++.|+.|+|||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999543
No 279
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=81.25 E-value=6.1 Score=34.32 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=28.3
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
.+-+++++||.-.-+|......+...++.+.++.-+|+.|
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 536 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIA 536 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 5557999999988788766777777777765444444443
No 280
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=81.10 E-value=0.8 Score=37.24 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
.+.+++.||+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999544
No 281
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=81.10 E-value=0.87 Score=33.51 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|.-+++.|+.|+|||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667899999999999544
No 282
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=81.00 E-value=0.72 Score=33.16 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchhHHhH
Q 027749 69 KGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~ 88 (219)
.|.-+.+.||.|+|||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999995544
No 283
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=80.95 E-value=1.4 Score=35.45 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=17.6
Q ss_pred HHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 64 ~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
+..++.|.| ++.-|+||+|||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344567876 667899999999544
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=80.84 E-value=0.8 Score=32.43 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhHHhH
Q 027749 72 DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~ 88 (219)
.+++.|+.|+|||...-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999995543
No 285
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=80.74 E-value=0.81 Score=32.66 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
-+++.|+.|+|||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999544
No 286
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.63 E-value=0.62 Score=36.30 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=31.4
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCChHHHHHHHHHHh--CCCcEEEEcCCCCchhHHh
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~lv~~~tG~GKT~~~ 87 (219)
+-.+|+++.-.+.+.+.+...... .. ....+..+. -.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456788887777777666543110 00 012222221 1245999999999999443
No 287
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=80.59 E-value=4.8 Score=33.73 Aligned_cols=67 Identities=9% Similarity=0.009 Sum_probs=47.0
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh-cCCCeEEEeChHHHHHHHHcCCCCCCCccEEE
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lV 180 (219)
.++||.+|++.-++++.+.+.+. ++.+..+++.... ...... .+..+|+|+|. . -..++++.. ++||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~~~~f~~g~~~vLVaT~-----v-~~~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TEYPKTKLTDWDFVVTTD-----I-SEMGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HHGGGGGSSCCSEEEECG-----G-GGSSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HHHHhhccCCceEEEECC-----H-HHhCcCCCC-CEEE
Confidence 36999999999999988888664 5677777765442 222233 34679999994 2 346778888 7665
No 288
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=80.49 E-value=0.76 Score=32.86 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+..+++.|+.|+|||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999554
No 289
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.44 E-value=0.43 Score=36.84 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999544
No 290
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=80.32 E-value=2.5 Score=30.62 Aligned_cols=37 Identities=19% Similarity=0.097 Sum_probs=21.9
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P 109 (219)
-+++.|+.|+||| .++-.++..+........++-.-|
T Consensus 8 ~i~i~G~sGsGKT-Tl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 8 LLAFAAWSGTGKT-TLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp EEEEECCTTSCHH-HHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEeCCCCCHH-HHHHHHHHhccccCCceeEEeeCC
Confidence 4789999999999 344444444443333344444444
No 291
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=80.27 E-value=1.3 Score=36.00 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=17.0
Q ss_pred HHHhCCCc--EEEEcCCCCchhHHh
Q 027749 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 65 ~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
..++.|.| ++..|+||+|||...
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34467776 567799999999554
No 292
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.11 E-value=1.2 Score=36.19 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
-++|.||||+|||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4789999999999544
No 293
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.77 E-value=0.56 Score=37.61 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
..++++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 457999999999999443
No 294
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=79.68 E-value=1 Score=33.32 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=16.3
Q ss_pred HHhCCCcEEEEcCCCCchhHHh
Q 027749 66 PIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 66 ~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
.+..|.-+.+.||.|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999543
No 295
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=79.66 E-value=1.2 Score=35.52 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=15.8
Q ss_pred hCCCcEEEEcCCCCchhHH
Q 027749 68 IKGRDVIAQAQSGTGKTSM 86 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~ 86 (219)
..|.-+.|.||+|+|||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3677889999999999943
No 296
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=79.64 E-value=2.3 Score=41.88 Aligned_cols=90 Identities=13% Similarity=0.235 Sum_probs=52.5
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (219)
|+-+.+.+|.|+|||...+.. +...... +..++|+.+-.++-... ++++ +++.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~-~a~~~~~--g~~~~~i~~e~~~~~~~---~~~~----Gv~~----------------- 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQV-IAAAQRE--GKTCAFIDAEHALDPIY---ARKL----GVDI----------------- 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHH-HHHHHHT--TCCEEEECTTSCCCHHH---HHHT----TCCG-----------------
T ss_pred CCEEEEEcCCCCCHHHHHHHH-HHHHHhc--CCeEEEEecCCCCCHHH---HHHc----CCCH-----------------
Confidence 466899999999999655444 3333333 34588888877776554 3343 2221
Q ss_pred CCCeEEEeChHH---HHHHHHcCCCCCCCccEEEeccchhhhc
Q 027749 150 HGVHVVSGTPGR---VCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (219)
Q Consensus 150 ~~~~I~v~Tp~~---l~~~l~~~~~~~~~l~~lVvDE~h~l~~ 189 (219)
-++++.-|+. .+..+.. .+.-..+++||||.+..+..
T Consensus 1484 --~~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 --DNLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp --GGCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred --HHeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 1245555533 2222211 11123477999999887764
No 297
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=79.60 E-value=0.69 Score=33.38 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|..+++.|+.|+|||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456899999999999554
No 298
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=79.57 E-value=4.5 Score=32.28 Aligned_cols=54 Identities=13% Similarity=0.051 Sum_probs=29.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccC---CCceeEEEEcCCHHH-HHHHHHHHHH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTREL-ATQTEKVILA 123 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~l-~~q~~~~~~~ 123 (219)
|.-+++.|++|+|||...+..+....... ..+.+++|+.-...+ ..++...+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999954443333322211 113457777655432 3444444443
No 299
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=79.54 E-value=20 Score=28.80 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
.+.+.|+.|+|||..+
T Consensus 81 ~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 81 RVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999443
No 300
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=79.53 E-value=1.1 Score=39.63 Aligned_cols=75 Identities=15% Similarity=0.251 Sum_probs=47.2
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHh--ccccceeEEEEECC--------cccHHHHHHh---c-CCCeEEEeChHHHHHHH
Q 027749 101 EVQALILSPTRELATQTEKVILAI--GDFINIQAHACVGG--------KSVGEDIRKL---E-HGVHVVSGTPGRVCDMI 166 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~l---~-~~~~I~v~Tp~~l~~~l 166 (219)
+.++||.++++..+..+.+.+... ....++.+..++|+ .+..++...+ . +..+|+|+|. +
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 467999999999999999988764 22336788888887 5555443333 2 3568889884 1
Q ss_pred HcCCCCCCCccEEEe
Q 027749 167 KRKTLRTRAIKLLVL 181 (219)
Q Consensus 167 ~~~~~~~~~l~~lVv 181 (219)
-..++++.++++||.
T Consensus 474 ~~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 474 AEEGLDIKECNIVIR 488 (699)
T ss_dssp CCTTSCCCSCCCCEE
T ss_pred cccCCccccCCEEEE
Confidence 245677777776653
No 301
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=79.53 E-value=1.7 Score=34.10 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=16.1
Q ss_pred hCCCcEEEEcCCCCchhHHh
Q 027749 68 IKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~ 87 (219)
..|.-+++.|++|+|||...
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~ 52 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFV 52 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHH
Confidence 35677899999999999443
No 302
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=79.46 E-value=1.7 Score=35.30 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=17.2
Q ss_pred HHHhCCCc--EEEEcCCCCchhHHh
Q 027749 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 65 ~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
..+++|.| ++..|+||+|||...
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34567876 567799999999554
No 303
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=79.45 E-value=3.9 Score=32.05 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=48.4
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCC
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (219)
.+.++||.++++..+..+.+.+. .+..++|+.+..++...+ .+..+|+|+|. .+ ..++++..
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gid~~~ 284 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VA-SRGLDIPL 284 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HH-HTTCCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----cc-ccCCCccC
Confidence 34569999999988877666543 345566776655443332 23678999994 33 46788999
Q ss_pred ccEEEeccc
Q 027749 176 IKLLVLDES 184 (219)
Q Consensus 176 l~~lVvDE~ 184 (219)
+++||.-+.
T Consensus 285 ~~~Vi~~~~ 293 (337)
T 2z0m_A 285 VEKVINFDA 293 (337)
T ss_dssp BSEEEESSC
T ss_pred CCEEEEecC
Confidence 998887554
No 304
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=79.40 E-value=1.4 Score=32.23 Aligned_cols=43 Identities=14% Similarity=0.211 Sum_probs=22.7
Q ss_pred EEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHH
Q 027749 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~ 122 (219)
++|.|++|||||..+ .-+.. . +..+++++.....-.++.+++.
T Consensus 2 ilV~Gg~~SGKS~~A-~~la~---~---~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHA-EALIG---D---APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHH-HHHHC---S---CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHH-HHHHh---c---CCCeEEEecCCCCCHHHHHHHH
Confidence 689999999999333 22222 2 2237888775544334444443
No 305
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=79.27 E-value=3.6 Score=34.94 Aligned_cols=98 Identities=13% Similarity=0.130 Sum_probs=44.0
Q ss_pred CCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEE--------ECCcccHHHHH---Hh
Q 027749 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC--------VGGKSVGEDIR---KL 148 (219)
Q Consensus 80 G~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~---~l 148 (219)
.++|- ..+.-++........+.++||.++++..+..+.+.+.+.....++++..+ .|+.+..++.. ..
T Consensus 370 ~~~K~-~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 370 ENPKL-EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp CCHHH-HHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------
T ss_pred CChHH-HHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 45565 33333443333223356799999999999999998876522222333333 33344333322 22
Q ss_pred c--CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccc
Q 027749 149 E--HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (219)
Q Consensus 149 ~--~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~ 184 (219)
. +..+|+|+|. . -..++++..+++||.=+.
T Consensus 449 ~~~g~~~vLvaT~-----~-~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 449 KTSKDNRLLIATS-----V-ADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp -----CCEEEEEC-----------------CEEEEETC
T ss_pred cccCceEEEEEcC-----c-hhcCCCchhCCEEEEeCC
Confidence 2 3468999994 2 246778889998876444
No 306
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=79.27 E-value=1.7 Score=35.35 Aligned_cols=23 Identities=30% Similarity=0.545 Sum_probs=17.1
Q ss_pred HHHhCCCc--EEEEcCCCCchhHHh
Q 027749 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 65 ~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
..++.|.| ++.-|+||+|||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34567876 567899999999554
No 307
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=79.12 E-value=1.2 Score=35.87 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhHHhH
Q 027749 72 DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~ 88 (219)
.++|+||||+|||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999995443
No 308
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=79.10 E-value=1.8 Score=35.56 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=17.5
Q ss_pred HHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 64 ~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
+..++.|.| ++..|+||+|||...
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 344568876 567799999999443
No 309
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=79.04 E-value=1.8 Score=35.52 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=17.1
Q ss_pred HHHhCCCc--EEEEcCCCCchhHHh
Q 027749 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 65 ~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
..++.|.| ++.-|+||+|||...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34567876 567899999999543
No 310
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.96 E-value=1.6 Score=36.26 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 63 ~~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
.+..++.|.| ++..|+||+|||...
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4556678876 567799999999555
No 311
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=78.91 E-value=3.5 Score=34.37 Aligned_cols=66 Identities=5% Similarity=-0.070 Sum_probs=45.3
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh-cCCCeEEEeChHHHHHHHHcCCCCCCCccEE
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~l 179 (219)
.++||.+|++.-++.+++.+.+. ++++..++|+.. ....... .+..+|+|+|. .+ ..++++. +..|
T Consensus 172 ~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~-----v~-e~GiDip-~~~V 238 (431)
T 2v6i_A 172 GRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD-----IS-EMGANFK-ADRV 238 (431)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG-----GG-GTSCCCC-CSEE
T ss_pred CCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc-----hH-HcCcccC-CcEE
Confidence 46999999999999999988776 577888887632 2222222 34689999994 22 3566676 5554
No 312
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=78.88 E-value=16 Score=26.52 Aligned_cols=123 Identities=5% Similarity=-0.009 Sum_probs=43.3
Q ss_pred HhCCCcEEEEcCCCCchhHHhHHHHHhhhcc----------CCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEE
Q 027749 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDT----------SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~----------~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (219)
.+.|..+-+.+..|.|=|+.+.+|+...... ...+.++||+-........+...+... ++.
T Consensus 17 ~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~----g~~----- 87 (206)
T 3mm4_A 17 GSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM----GVS----- 87 (206)
T ss_dssp --------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT----TCS-----
T ss_pred cccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc----CCC-----
Confidence 3456677888889999998888886432211 012345666666655555555544433 220
Q ss_pred CCcccHHHHHHhcCCCeEEE-eChHHHHHHHHcC--------CCCCCCccEEEeccchhhhccccHHHHHHHHHh---CC
Q 027749 137 GGKSVGEDIRKLEHGVHVVS-GTPGRVCDMIKRK--------TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY---LP 204 (219)
Q Consensus 137 ~~~~~~~~~~~l~~~~~I~v-~Tp~~l~~~l~~~--------~~~~~~l~~lVvDE~h~l~~~~~~~~~~~i~~~---~~ 204 (219)
.|.. .+.+..+..+... ...-...++||+|-. |-+.+=...+..+.+. ..
T Consensus 88 ----------------~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~el~~~lr~~~~~~~ 149 (206)
T 3mm4_A 88 ----------------EVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYEATREIRKVEKSYG 149 (206)
T ss_dssp ----------------EEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHHHHHHHHHHHHTTT
T ss_pred ----------------eeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHHHHHHHHhhhhhcC
Confidence 2222 2344444444331 222235678888842 2222212333333332 24
Q ss_pred CCCeEEEEeecc
Q 027749 205 PDLQVCCPGSCF 216 (219)
Q Consensus 205 ~~~q~i~~SATl 216 (219)
++..+|++|+.-
T Consensus 150 ~~~piI~ls~~~ 161 (206)
T 3mm4_A 150 VRTPIIAVSGHD 161 (206)
T ss_dssp CCCCEEEEESSC
T ss_pred CCCcEEEEECCC
Confidence 567899998753
No 313
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=78.78 E-value=1.9 Score=34.87 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=18.8
Q ss_pred HHHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 63 ~~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
.+..++.|.| ++..|+||+|||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4556678876 567899999999544
No 314
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=78.78 E-value=1.7 Score=35.72 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=17.0
Q ss_pred HHHhCCCc--EEEEcCCCCchhHHh
Q 027749 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 65 ~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
..++.|.| ++..|+||+|||...
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34567876 567799999999543
No 315
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=78.69 E-value=1.7 Score=35.45 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=16.9
Q ss_pred HHHhCCCc--EEEEcCCCCchhHHh
Q 027749 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 65 ~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
..+++|.| ++.-|+||+|||...
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34457876 567799999999544
No 316
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=78.64 E-value=4.7 Score=31.23 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=19.1
Q ss_pred HHHhCCCcEEEEcCCCCchhHHhHH
Q 027749 65 MPIIKGRDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 65 ~~~~~~~~~lv~~~tG~GKT~~~~~ 89 (219)
.-+..|.-+++.||.|+|||.....
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHH
Confidence 3455778899999999999955443
No 317
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=78.64 E-value=1.8 Score=35.41 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=16.9
Q ss_pred HHHhCCCc--EEEEcCCCCchhHHh
Q 027749 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 65 ~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
..++.|.| ++..|+||+|||...
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 74 DDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCcceEEEECCCCCCcceEe
Confidence 34567876 667899999999544
No 318
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=78.62 E-value=1.7 Score=35.43 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=18.1
Q ss_pred HHHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 63 ~~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
++..++.|.| ++.-|+||+|||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3345568876 567799999999554
No 319
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=78.61 E-value=1.7 Score=36.21 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=17.1
Q ss_pred HHHhCCCc--EEEEcCCCCchhHHh
Q 027749 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 65 ~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
..++.|.| ++..|+||+|||...
T Consensus 148 ~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 148 QTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHhcCCceeEEeecCCCCCCCeEe
Confidence 44567876 567799999999554
No 320
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=78.52 E-value=1.8 Score=35.30 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=17.7
Q ss_pred HHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 64 ~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
+..++.|.| ++..|+||+|||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 344567876 567899999999554
No 321
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=78.49 E-value=1.8 Score=35.28 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=19.0
Q ss_pred HHHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 63 ~~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
.+..+++|.| ++..|+||+|||...
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4556678876 567799999999554
No 322
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=78.48 E-value=1.8 Score=35.43 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=17.5
Q ss_pred HHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 64 ~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
+..++.|.| ++.-|+||+|||...
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 344567876 566799999999543
No 323
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=78.25 E-value=1 Score=37.80 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=30.1
Q ss_pred ccCccccCCCCHHHHHHHHHCCCCCChHHHHH-HHH-HHhCCCcEEEEcCCCCchhHHh
Q 027749 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQR-AVM-PIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~Q~~-~~~-~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
+-.+|+++.=...+.+.|.+.-. +|.... .+. .....+.+++.||+|+|||...
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 34567777666666666654310 111100 000 1123468999999999999444
No 324
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=77.98 E-value=1 Score=33.12 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|.-+.+.|+.|+|||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567889999999999554
No 325
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=77.96 E-value=1.3 Score=32.45 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.++.++++|+.|+|||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4567899999999999544
No 326
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=77.91 E-value=0.97 Score=32.72 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+.-++++|+.|+|||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999554
No 327
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=77.89 E-value=11 Score=32.22 Aligned_cols=125 Identities=17% Similarity=0.186 Sum_probs=0.0
Q ss_pred HhCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHH
Q 027749 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (219)
+..|.-+++.|++|+||| .++..++...... +-+++++++... ..++...+..+... ..
T Consensus 278 i~~G~i~~i~G~~GsGKS-TLl~~l~g~~~~~--G~~vi~~~~ee~-~~~l~~~~~~~g~~-----------------~~ 336 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKT-LLVSRFVENACAN--KERAILFAYEES-RAQLLRNAYSWGMD-----------------FE 336 (525)
T ss_dssp EESSCEEEEEECTTSSHH-HHHHHHHHHHHTT--TCCEEEEESSSC-HHHHHHHHHTTSCC-----------------HH
T ss_pred CCCCcEEEEEeCCCCCHH-HHHHHHHHHHHhC--CCCEEEEEEeCC-HHHHHHHHHHcCCC-----------------HH
Q ss_pred HhcCCCeEEE-------eChHHHHHHHHcCCCCCCCccEEEeccchhhhccc-----cHHHHHHHHHhCCCCCeEEEEee
Q 027749 147 KLEHGVHVVS-------GTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----FKDQIYDVYRYLPPDLQVCCPGS 214 (219)
Q Consensus 147 ~l~~~~~I~v-------~Tp~~l~~~l~~~~~~~~~l~~lVvDE~h~l~~~~-----~~~~~~~i~~~~~~~~q~i~~SA 214 (219)
.+...-.+-+ .+.+...+.+..... ..+-++||+| -=.-++.. ....+..+++.+....-.++++.
T Consensus 337 ~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l-~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvs 414 (525)
T 1tf7_A 337 EMERQNLLKIVCAYPESAGLEDHLQIIKSEIN-DFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTN 414 (525)
T ss_dssp HHHHTTSEEECCCCGGGSCHHHHHHHHHHHHH-TTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhCCCEEEEEeccccCCHHHHHHHHHHHHH-hhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEE
No 328
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=77.84 E-value=1.8 Score=35.47 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=17.5
Q ss_pred HHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 64 ~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
+..++.|.| ++.-|+||+|||...
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 344567876 567799999999544
No 329
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=77.83 E-value=1.6 Score=33.78 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=17.0
Q ss_pred CCCcEEEEcCCCCchhHHhH
Q 027749 69 KGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~ 88 (219)
.|+.+++.|++|+|||...-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 48899999999999995543
No 330
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=77.63 E-value=1.2 Score=32.21 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=16.1
Q ss_pred hCCCcEEEEcCCCCchhHHh
Q 027749 68 IKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~ 87 (219)
..+..+++.|+.|+|||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34567899999999999544
No 331
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=77.62 E-value=1.7 Score=32.29 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.3
Q ss_pred cEEEEcCCCCchhHHhHH
Q 027749 72 DVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~ 89 (219)
-.++.|+.|+|||.....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 468999999999965543
No 332
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=77.57 E-value=1.7 Score=35.43 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=18.5
Q ss_pred HHHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 63 ~~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
.+..++.|.| ++..|+||+|||...
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4455667876 567799999999554
No 333
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=77.39 E-value=1.2 Score=32.73 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
+-++++|+.|+|||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999554
No 334
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=77.35 E-value=1.8 Score=36.05 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=18.9
Q ss_pred HHHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 63 ~~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
.+..++.|.| ++..|+||+|||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 4556678876 567799999999554
No 335
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=77.24 E-value=1.5 Score=32.55 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 58 AIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 58 ~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
+.++.. ..+..+..++++|+.|+|||...
T Consensus 14 ~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 14 RSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp HHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred HHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 343333 33456677899999999999544
No 336
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=77.07 E-value=2 Score=35.47 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=17.7
Q ss_pred HHHhCCCc--EEEEcCCCCchhHHhH
Q 027749 65 MPIIKGRD--VIAQAQSGTGKTSMIA 88 (219)
Q Consensus 65 ~~~~~~~~--~lv~~~tG~GKT~~~~ 88 (219)
..++.|.| ++.-|+||+|||....
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHhcCCceEEEEecCCCCCCCeEec
Confidence 44567876 6677999999996543
No 337
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=77.07 E-value=3.1 Score=30.10 Aligned_cols=26 Identities=12% Similarity=-0.018 Sum_probs=17.1
Q ss_pred cEEEEcCCCCchhHHhHHHHHhhhccC
Q 027749 72 DVIAQAQSGTGKTSMIALTVCQTVDTS 98 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~~~~~~~ 98 (219)
-+.+.|+.|+|||. .+..++..+...
T Consensus 6 ~i~i~G~sGsGKTT-l~~~L~~~l~~~ 31 (169)
T 1xjc_A 6 VWQVVGYKHSGKTT-LMEKWVAAAVRE 31 (169)
T ss_dssp EEEEECCTTSSHHH-HHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHH-HHHHHHHhhHhc
Confidence 36789999999994 333444444433
No 338
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=77.00 E-value=1.2 Score=32.19 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.-+++.||.|+|||...
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34689999999999544
No 339
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=76.96 E-value=1.5 Score=36.55 Aligned_cols=19 Identities=42% Similarity=0.789 Sum_probs=14.3
Q ss_pred chhhhccccHHHHHHHHHh
Q 027749 184 SDEMLSRGFKDQIYDVYRY 202 (219)
Q Consensus 184 ~h~l~~~~~~~~~~~i~~~ 202 (219)
+|.|++.|+.+.+..++..
T Consensus 209 vd~Ml~~GlleEv~~L~~~ 227 (409)
T 3eph_A 209 VDDMLERGALQEIKQLYEY 227 (409)
T ss_dssp HHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHCcHHHHHHHHHHh
Confidence 4567778888888888764
No 340
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=76.94 E-value=0.99 Score=34.02 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=12.3
Q ss_pred hCCCcEEEEcCCCCchhHHh
Q 027749 68 IKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~ 87 (219)
..|.-+.+.||+|+|||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45677889999999999554
No 341
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=76.87 E-value=2.3 Score=34.74 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l 113 (219)
|.-++|.||.|+|||. ++..++..+... +..++|+..-...
T Consensus 61 G~i~~I~GppGsGKST-Lal~la~~~~~~--gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTT-LALHAIAEAQKM--GGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHH-HHHHHHHHHHHT--TCCEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHH-HHHHHHHHHHhc--CCeEEEEeccccc
Confidence 4568899999999994 444444443332 2347777665443
No 342
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=76.82 E-value=1.9 Score=35.48 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=16.4
Q ss_pred HHhCCCc--EEEEcCCCCchhHHh
Q 027749 66 PIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 66 ~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
.++.|.| ++..|+||+|||...
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 3457776 667799999999443
No 343
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=76.66 E-value=1.7 Score=35.64 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=18.6
Q ss_pred HHHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 63 ~~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
.+..++.|.| ++..|+||+|||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4455678876 566799999999554
No 344
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=76.65 E-value=8.5 Score=35.57 Aligned_cols=98 Identities=13% Similarity=0.123 Sum_probs=50.0
Q ss_pred CCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEE--------EECCcccHHHHHH---h
Q 027749 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA--------CVGGKSVGEDIRK---L 148 (219)
Q Consensus 80 G~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---l 148 (219)
.++|. ..+.-++........+.++||.++++..+..+.+.+.+.....++++.. .+|+.+..++... .
T Consensus 611 ~~~K~-~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 611 ENPKL-EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCHHH-HHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred CCHHH-HHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence 35555 3334444443333446789999999999999999998753222233333 3344444433222 2
Q ss_pred c--CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccc
Q 027749 149 E--HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (219)
Q Consensus 149 ~--~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~ 184 (219)
. +..+|+|+|. . -..++++..+++||.=+.
T Consensus 690 r~~g~~~VLVaT~-----~-~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 690 KTSKDNRLLIATS-----V-ADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ----CCSEEEEEC-----C-------CCCCSEEEEESC
T ss_pred hccCCeeEEEEeC-----c-hhcCCcchhCCEEEEeCC
Confidence 2 3578999993 2 246688889998886444
No 345
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=76.62 E-value=4.5 Score=35.93 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=48.6
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhcCCCeEEEeChHHHHHHHHcCCCCCCCccEEE
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lV 180 (219)
+.++||.++++.-++++.+.+.+. ++.+..++|+.+..+. -..+.+|+|+|. .+. .++++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vae-rGIDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALM-TGYTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THH-HHCCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHH-ccCCCC-CcEEE
Confidence 457999999999999998888764 6788888988876542 234569999994 322 345664 88776
No 346
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=76.59 E-value=2.2 Score=35.89 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=17.0
Q ss_pred HHHhCCCc--EEEEcCCCCchhHHh
Q 027749 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 65 ~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
..++.|.| ++..|+||+|||...
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34467876 667799999999554
No 347
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=76.25 E-value=5 Score=35.06 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=18.7
Q ss_pred HHHhCCCcEEEEcCCCCchhHHh
Q 027749 65 MPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 65 ~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
..+..++.+++.||+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34567889999999999999444
No 348
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=76.20 E-value=1.5 Score=38.39 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchhH
Q 027749 72 DVIAQAQSGTGKTS 85 (219)
Q Consensus 72 ~~lv~~~tG~GKT~ 85 (219)
++++.||+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999993
No 349
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=76.12 E-value=1.2 Score=34.99 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.-++++||.|+|||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999544
No 350
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=76.10 E-value=3.4 Score=33.33 Aligned_cols=53 Identities=9% Similarity=0.012 Sum_probs=28.4
Q ss_pred CcEEEEcCCCCchhHHhHHHHHhhhccC---CCceeEEEEcCCHHH-HHHHHHHHHH
Q 027749 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTREL-ATQTEKVILA 123 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~~~~~~~~~~---~~~~~~lil~P~~~l-~~q~~~~~~~ 123 (219)
.-+++.|++|+|||...+..+....... ..+.+++|+.-...+ ..++...+..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999944433333322211 023457777655431 3344444443
No 351
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=76.04 E-value=1.8 Score=34.71 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
..+++.||+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999544
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=76.02 E-value=1.5 Score=32.65 Aligned_cols=18 Identities=17% Similarity=0.291 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+..+++.|+.|+|||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999554
No 353
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=75.98 E-value=1.9 Score=35.67 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=21.5
Q ss_pred ChHHHHHHHH--------HHhCCCc--EEEEcCCCCchhHHh
Q 027749 56 PSAIQQRAVM--------PIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 56 ~~~~Q~~~~~--------~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
+..-|.+++. .++.|.| ++.-|+||+|||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4445666554 3457776 567799999999544
No 354
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.97 E-value=1.4 Score=30.96 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.7
Q ss_pred cEEEEcCCCCchhHH
Q 027749 72 DVIAQAQSGTGKTSM 86 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~ 86 (219)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999944
No 355
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=75.97 E-value=1.5 Score=31.28 Aligned_cols=17 Identities=18% Similarity=0.452 Sum_probs=14.1
Q ss_pred cEEEEcCCCCchhHHhH
Q 027749 72 DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~ 88 (219)
.+++.|+.|+|||...-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68899999999995543
No 356
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=75.84 E-value=36 Score=28.85 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=17.8
Q ss_pred HHhCCCcEEEEcCCCCchhHHh
Q 027749 66 PIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 66 ~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
.+.+|+..++.++.|.|||...
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~ 168 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLI 168 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHH
Confidence 3457888999999999999443
No 357
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=75.51 E-value=1.3 Score=31.75 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|..+++.|+.|+|||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999543
No 358
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=75.35 E-value=1.5 Score=31.03 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchhHHhHH
Q 027749 71 RDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~~ 89 (219)
.++++.|+.|+|||...-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4789999999999965543
No 359
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=75.34 E-value=1.3 Score=36.12 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=27.5
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCC-CCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~-~~q~i~~S 213 (219)
.+-+++++||--.-++......+..+++.+.. +..+|+.|
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~it 342 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFIT 342 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 45678999998877777667777777777643 33444443
No 360
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=75.31 E-value=1.4 Score=37.21 Aligned_cols=19 Identities=21% Similarity=0.421 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 027749 70 GRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~ 88 (219)
..++++.||+|+|||...-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4589999999999995443
No 361
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=75.24 E-value=4.7 Score=41.62 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.5
Q ss_pred HhCCCcEEEEcCCCCchhHHh
Q 027749 67 IIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~~~ 87 (219)
+..+++++++||+|+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 456799999999999999443
No 362
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=74.94 E-value=1.5 Score=32.91 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
...+++.|++|+|||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999544
No 363
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=74.93 E-value=1.8 Score=31.10 Aligned_cols=17 Identities=18% Similarity=0.360 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
..+++.|+.|+|||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999654
No 364
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=74.76 E-value=3.2 Score=33.99 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=24.2
Q ss_pred CCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
|.-++|.++.|+|||... +.++..+... +..++|+..-.
T Consensus 74 G~li~I~G~pGsGKTtla-l~la~~~~~~--g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLA-LAIVAQAQKA--GGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHH-HHHHHHHHHT--TCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHH-HHHHHHHHHC--CCeEEEEECCC
Confidence 456889999999999444 4344433332 23467766544
No 365
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=74.75 E-value=1.5 Score=31.57 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.-+++.|+.|+|||...
T Consensus 4 ~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999654
No 366
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=74.66 E-value=1.7 Score=32.42 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
...+++.|+.|+|||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999554
No 367
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=74.54 E-value=10 Score=33.33 Aligned_cols=67 Identities=7% Similarity=0.029 Sum_probs=46.2
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh-cCCCeEEEeChHHHHHHHHcCCCCCCCccEEE
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lV 180 (219)
.++||.++++.-++.+.+.+.+. ++++..++|. ......... ....+|+|+|. . -..++++. +++||
T Consensus 356 ~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v-~~rGiDi~-v~~VI 423 (618)
T 2whx_A 356 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----I-SEMGANFR-AGRVI 423 (618)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----G-GGTTCCCC-CSEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----H-HHcCcccC-ceEEE
Confidence 46999999999999999988775 5677777764 222222222 24678999995 2 34667775 77763
No 368
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=74.51 E-value=2.2 Score=35.08 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=17.3
Q ss_pred HHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 64 ~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
+..++.|.| ++.-|+||+|||...
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 344567876 567799999999444
No 369
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=74.47 E-value=1.8 Score=31.69 Aligned_cols=17 Identities=24% Similarity=0.349 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
..+++.|+.|+|||...
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999554
No 370
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=74.46 E-value=11 Score=33.42 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=52.9
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHH---HHHHhc---CCCeEEEeChHHHHHHHHcCCCCCCCcc
Q 027749 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGE---DIRKLE---HGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (219)
Q Consensus 104 ~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~---~~~~I~v~Tp~~l~~~l~~~~~~~~~l~ 177 (219)
.+++++++.-+..+.+.+.+. ++.+..++|+.+..+ ...... +..+|+|+|. . -..++++ +++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i-~e~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----A-IGMGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----G-GGSSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----H-HHCCcCc-Ccc
Confidence 466688888888888888764 678888999988763 333333 4579999995 2 3467888 899
Q ss_pred EEEeccchh
Q 027749 178 LLVLDESDE 186 (219)
Q Consensus 178 ~lVvDE~h~ 186 (219)
+||.-....
T Consensus 392 ~VI~~~~~k 400 (677)
T 3rc3_A 392 RIIFYSLIK 400 (677)
T ss_dssp EEEESCSBC
T ss_pred EEEECCccc
Confidence 998877754
No 371
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.45 E-value=1.8 Score=30.67 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
+.+++.|+.|+|||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35889999999999554
No 372
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=74.43 E-value=1.8 Score=36.56 Aligned_cols=18 Identities=22% Similarity=0.542 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
.+++++.||+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999544
No 373
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=74.35 E-value=2.8 Score=34.32 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=16.6
Q ss_pred CCCcEEEEcCCCCchhHHhHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~ 89 (219)
.+.+++|.|++|+|||...-.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~ 54 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM 54 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHH
Confidence 467899999999999954433
No 374
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=74.30 E-value=1.7 Score=31.63 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=19.0
Q ss_pred CCccEEEeccch--hhhccccHHHHHHHHHh
Q 027749 174 RAIKLLVLDESD--EMLSRGFKDQIYDVYRY 202 (219)
Q Consensus 174 ~~l~~lVvDE~h--~l~~~~~~~~~~~i~~~ 202 (219)
.+-+++++||++ ..++..+...+..+++.
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 455789999954 34455566666666665
No 375
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=74.27 E-value=1.5 Score=31.71 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCchhHHhH
Q 027749 69 KGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~ 88 (219)
.+..++++|+.|+|||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34568899999999995443
No 376
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=74.16 E-value=0.76 Score=33.94 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=16.8
Q ss_pred HHhCCCcEEEEcCCCCchhHHhH
Q 027749 66 PIIKGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 66 ~~~~~~~~lv~~~tG~GKT~~~~ 88 (219)
.+..+.-+.+.|++|+|||...-
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHH
Confidence 34445567899999999995443
No 377
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=74.08 E-value=5.8 Score=35.82 Aligned_cols=98 Identities=13% Similarity=0.132 Sum_probs=46.6
Q ss_pred CCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhcccccee--------EEEEECCcccHHHHHH---h
Q 027749 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ--------AHACVGGKSVGEDIRK---L 148 (219)
Q Consensus 80 G~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---l 148 (219)
.++|-. .+.-++........+.++||.++++..+..+.+.+.+.....+++ .....|+.+..++... .
T Consensus 611 ~~~K~~-~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 611 ENPKLE-ELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CCHHHH-HHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------
T ss_pred CChHHH-HHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHh
Confidence 456653 333344332222345679999999999999999997643222222 2233344444433222 2
Q ss_pred c--CCCeEEEeChHHHHHHHHcCCCCCCCccEEEeccc
Q 027749 149 E--HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (219)
Q Consensus 149 ~--~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~ 184 (219)
. +..+|+|+|. . -..++++..+++||.=+.
T Consensus 690 ~~~g~~~vLVaT~-----~-~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 690 KTSKDNRLLIATS-----V-ADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp ----CCSEEEEEC-----C--------CCCSEEEEESC
T ss_pred hccCCceEEEEcC-----c-hhcCCCchhCCEEEEeCC
Confidence 2 3578999994 2 245688899998876444
No 378
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=73.99 E-value=1.6 Score=31.73 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.+.-+++.|+.|+|||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567899999999999544
No 379
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=73.93 E-value=1.5 Score=32.49 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCCchhHH
Q 027749 69 KGRDVIAQAQSGTGKTSM 86 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~ 86 (219)
.|.-+.|.||+|+|||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678999999999943
No 380
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=73.93 E-value=3.9 Score=33.14 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=23.9
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~ 110 (219)
.|.-+++.|+.|+|||...+. ++..+... +.+++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~-la~~~~~~--g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALH-AVANAQAA--GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHH-HHHHHHHT--TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHhC--CCeEEEEECC
Confidence 356689999999999954443 33333222 2346776544
No 381
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=73.86 E-value=1.6 Score=32.23 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHhH
Q 027749 72 DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~ 88 (219)
.+++.|+.|+|||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999995543
No 382
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=73.69 E-value=1.7 Score=31.87 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.6
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.+.-+++.|+.|+|||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4567899999999999554
No 383
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=73.69 E-value=1.7 Score=32.17 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchhHHhH
Q 027749 72 DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~ 88 (219)
.+++.|+.|+|||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999995543
No 384
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=73.69 E-value=1.6 Score=31.45 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
.+++.|+.|+|||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999544
No 385
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=73.64 E-value=1.6 Score=31.35 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
-.+|.||+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999443
No 386
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=73.57 E-value=4.4 Score=33.02 Aligned_cols=40 Identities=18% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 111 (219)
.|.-+++.|+.|+|||...+. ++..+... +.+++|+.-..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~-la~~~~~~--g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQ-VIAAAQRE--GKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHH-HHHHHHHT--TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHHC--CCeEEEEeCCC
Confidence 346789999999999955443 33333322 23477776543
No 387
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=73.53 E-value=6.8 Score=41.11 Aligned_cols=19 Identities=32% Similarity=0.470 Sum_probs=16.7
Q ss_pred HhCCCcEEEEcCCCCchhH
Q 027749 67 IIKGRDVIAQAQSGTGKTS 85 (219)
Q Consensus 67 ~~~~~~~lv~~~tG~GKT~ 85 (219)
+..+++++++||||+|||.
T Consensus 1301 l~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHH
T ss_pred HHCCCcEEEECCCCCCHHH
Confidence 4578899999999999993
No 388
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=73.43 E-value=1.6 Score=32.02 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+.-+++.|+.|+|||...
T Consensus 4 ~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 456889999999999544
No 389
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=73.27 E-value=1.8 Score=31.77 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCCchhHHhH
Q 027749 69 KGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~ 88 (219)
.+.-++++|+.|+|||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999995543
No 390
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=72.94 E-value=1.8 Score=32.60 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.+..+++.|+.|+|||...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3457999999999999544
No 391
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=72.82 E-value=1.7 Score=37.05 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=29.4
Q ss_pred cCccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHH--hCCCcEEEEcCCCCchhHHh
Q 027749 32 ITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPI--IKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~--~~~~~~lv~~~tG~GKT~~~ 87 (219)
-.+|+++.=.....+.+.+.- +..|.. +..+ .-.+.+++.||+|+|||...
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~-----~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSK-----FNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHH-----HHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHH-----HhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 356888766666666555421 112211 1111 12356999999999999544
No 392
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.81 E-value=1.6 Score=32.24 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+.-+.+.||.|+|||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 445779999999999544
No 393
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=72.71 E-value=1.2 Score=38.14 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=43.8
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHH---HHHh-cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l-~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
+.++||.++++.-+..+...+.+. +..+..++|+.+..++ .... .+..+|+|+|. + -..++++.++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~-l~~GiDip~v 426 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----V-IARGIDVSQV 426 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----h-hhcCCCccCC
Confidence 356999999999998888877553 5666667766554322 1222 24678999994 2 2466788889
Q ss_pred cEEEecc
Q 027749 177 KLLVLDE 183 (219)
Q Consensus 177 ~~lVvDE 183 (219)
++||...
T Consensus 427 ~~VI~~~ 433 (508)
T 3fho_A 427 NLVVNYD 433 (508)
T ss_dssp CEEEC--
T ss_pred CEEEEEC
Confidence 9888543
No 394
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=72.56 E-value=1.7 Score=31.19 Aligned_cols=16 Identities=25% Similarity=0.337 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
.+++.|+.|+|||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999554
No 395
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=72.39 E-value=1.8 Score=32.16 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchhHHhH
Q 027749 71 RDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~~ 88 (219)
..+.+.|++|+|||...-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999995543
No 396
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=72.38 E-value=1.6 Score=31.28 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=11.2
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 027749 70 GRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~ 88 (219)
+.-+++.|+.|+|||...-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999995543
No 397
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=71.92 E-value=2.1 Score=30.18 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
.+++.|+.|+|||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999544
No 398
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=71.85 E-value=1.8 Score=33.03 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=23.1
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~ 204 (219)
.+-+++++||--.-+|......+..+++.+.
T Consensus 162 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 192 (235)
T 3tif_A 162 NNPPIILADQPTWALDSKTGEKIMQLLKKLN 192 (235)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 4457999999988777766677777776653
No 399
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=71.78 E-value=2 Score=31.25 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
.+++.|+.|+|||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999543
No 400
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.76 E-value=1.3 Score=40.18 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=32.7
Q ss_pred cCccccCCCCHHHHHHHHHCC-CCCChHHHHHHHHHHhCCCcEEEEcCCCCchhHHh
Q 027749 32 ITSFDAMGIKDDLLRGIYQYG-FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 32 ~~~~~~~~l~~~~~~~l~~~~-~~~~~~~Q~~~~~~~~~~~~~lv~~~tG~GKT~~~ 87 (219)
-.+|++.+--..+.+.|.+.- +..-+|.+..-+ .+...+.+++.||.|+|||+.+
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHHH
Confidence 357888888888888887642 111111110000 0122357999999999999443
No 401
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=71.74 E-value=2 Score=31.53 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.0
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
.+.+.|+.|+|||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999554
No 402
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.58 E-value=2 Score=31.38 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
-+++.|+.|+|||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999554
No 403
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=71.42 E-value=0.82 Score=38.53 Aligned_cols=70 Identities=17% Similarity=0.166 Sum_probs=0.0
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
..++||.++++.-+..+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. .+ ..++++.++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~-~~GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----cc-ccCCccccC
Confidence 356999999999988888877654 56677777776655443332 23578999993 22 356788888
Q ss_pred cEEE
Q 027749 177 KLLV 180 (219)
Q Consensus 177 ~~lV 180 (219)
++||
T Consensus 403 ~~VI 406 (479)
T 3fmp_B 403 SVVI 406 (479)
T ss_dssp ----
T ss_pred CEEE
Confidence 8876
No 404
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=71.24 E-value=3.2 Score=33.05 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=20.8
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
..+.+|++..+.+.+. ..+...++.+.+...++..|
T Consensus 151 ~ad~ill~k~dl~de~---~~l~~~l~~l~~~~~ii~~s 186 (318)
T 1nij_A 151 YADRILLTKTDVAGEA---EKLHERLARINARAPVYTVT 186 (318)
T ss_dssp TCSEEEEECTTTCSCT---HHHHHHHHHHCSSSCEEECC
T ss_pred hCCEEEEECcccCCHH---HHHHHHHHHhCCCCeEEEec
Confidence 3567787888765332 55555665555555555543
No 405
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=71.20 E-value=9.1 Score=30.65 Aligned_cols=15 Identities=13% Similarity=0.184 Sum_probs=12.4
Q ss_pred EEEEcCCCCchhHHh
Q 027749 73 VIAQAQSGTGKTSMI 87 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~ 87 (219)
+-+.||+|+|||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999543
No 406
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=71.07 E-value=2.3 Score=31.52 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchhHHhH
Q 027749 69 KGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~ 88 (219)
.|.-+.+.||+|+|||....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999994443
No 407
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.88 E-value=2 Score=38.60 Aligned_cols=19 Identities=21% Similarity=0.421 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 027749 70 GRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~ 88 (219)
..++++.||+|+|||...-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4589999999999995543
No 408
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=70.86 E-value=2 Score=31.47 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
.+.+.|+.|+|||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999554
No 409
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=70.81 E-value=2.1 Score=31.83 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+..+++.|+.|+|||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999544
No 410
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=70.49 E-value=3 Score=30.91 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=22.2
Q ss_pred ccEEEeccchhhhccc-cHHHHHHHHHhC----CCCCeEEEEeec
Q 027749 176 IKLLVLDESDEMLSRG-FKDQIYDVYRYL----PPDLQVCCPGSC 215 (219)
Q Consensus 176 l~~lVvDE~h~l~~~~-~~~~~~~i~~~~----~~~~q~i~~SAT 215 (219)
-.+|||||||.+.... ......+++..+ .+..++|+++.-
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 4589999999985321 111111233333 345678887754
No 411
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=70.24 E-value=2.2 Score=32.91 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.-++++|+.|+|||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45889999999999544
No 412
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=70.13 E-value=2 Score=35.11 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=0.0
Q ss_pred EEEEcCCCCchhHHh
Q 027749 73 VIAQAQSGTGKTSMI 87 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~ 87 (219)
.++.|+||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 413
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=70.06 E-value=2.3 Score=30.59 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.1
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
-+++.|+.|+|||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3679999999999544
No 414
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=69.90 E-value=2.1 Score=32.69 Aligned_cols=26 Identities=8% Similarity=0.243 Sum_probs=18.3
Q ss_pred CccEEEeccchhhhccccHHHHHHHH
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVY 200 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~ 200 (219)
+-+++++||.-.-+|......+..++
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l 170 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENV 170 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHH
Confidence 34689999988777765556666655
No 415
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=69.76 E-value=2.5 Score=32.40 Aligned_cols=20 Identities=20% Similarity=0.323 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCCchhHHhH
Q 027749 69 KGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~ 88 (219)
.+..+.+.||+|+|||...-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45568899999999995543
No 416
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=69.73 E-value=2.4 Score=30.68 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.1
Q ss_pred EEEEcCCCCchhHHhH
Q 027749 73 VIAQAQSGTGKTSMIA 88 (219)
Q Consensus 73 ~lv~~~tG~GKT~~~~ 88 (219)
+++.|+.|+|||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999995543
No 417
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=69.67 E-value=5.8 Score=31.49 Aligned_cols=18 Identities=44% Similarity=0.684 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+.-+.+.||+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456789999999999443
No 418
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=69.29 E-value=7 Score=32.54 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHh---CCCcEEEEcCCCCchhHHh
Q 027749 55 KPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 55 ~~~~~Q~~~~~~~~---~~~~~lv~~~tG~GKT~~~ 87 (219)
.|...-.+++..+. +|....|.++.|+|||...
T Consensus 157 e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp STTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred cchhccchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 34445567777654 7889999999999999544
No 419
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=69.23 E-value=3.4 Score=35.15 Aligned_cols=51 Identities=10% Similarity=0.059 Sum_probs=28.6
Q ss_pred hCCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHH
Q 027749 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~ 121 (219)
..|.-++|.|++|+|||... +-++..+.... +..++|+.--. -..|+..++
T Consensus 240 ~~G~l~li~G~pG~GKT~la-l~~a~~~a~~~-g~~vl~~s~E~-s~~~l~~r~ 290 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFV-RQQALQWGTAM-GKKVGLAMLEE-SVEETAEDL 290 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHH-HHHHHHHTTTS-CCCEEEEESSS-CHHHHHHHH
T ss_pred CCCeEEEEeecCCCCchHHH-HHHHHHHHHhc-CCcEEEEeccC-CHHHHHHHH
Confidence 34566899999999999444 44444333321 22366665432 234554444
No 420
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=69.07 E-value=6.2 Score=33.12 Aligned_cols=67 Identities=6% Similarity=-0.001 Sum_probs=43.9
Q ss_pred eeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc-CCCeEEEeChHHHHHHHHcCCCCCCCccEEE
Q 027749 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (219)
Q Consensus 102 ~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lV 180 (219)
.++||.+|++.-++.+.+.+.+. ++.+..+.+.. ......... +..+|+|+|. . -..++++.. ++||
T Consensus 191 ~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT~-----v-~~~GiDip~-~~VI 258 (459)
T 2z83_A 191 GKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITTD-----I-SEMGANFGA-SRVI 258 (459)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC-CCCCGGGSSSCCCSEEEESS-----C-C---CCCSC-SEEE
T ss_pred CCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH-HHHHHhhccCCCceEEEECC-----h-HHhCeecCC-CEEE
Confidence 46999999999999999988775 56777777642 222222222 3578999994 2 235677777 6665
No 421
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=69.05 E-value=16 Score=32.30 Aligned_cols=75 Identities=19% Similarity=0.155 Sum_probs=52.0
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccc--------------------------------cceeEEEEECCcccHHHHHHh
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDF--------------------------------INIQAHACVGGKSVGEDIRKL 148 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~l 148 (219)
+.++||.+|++.-+..+...+.+.... ....+..++|+.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 356999999999999999888765322 012467788888776554333
Q ss_pred ----cCCCeEEEeChHHHHHHHHcCCCCCCCccEEEe
Q 027749 149 ----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVL 181 (219)
Q Consensus 149 ----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l~~lVv 181 (219)
.+..+|+|+|. . -..++++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT~-----~-l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----T-LAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEECG-----G-GGGSSCCCBSEEEEC
T ss_pred HHHHcCCCeEEEECh-----H-HhcccCCCceEEEEe
Confidence 24678999994 2 245678888877663
No 422
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=69.05 E-value=3.9 Score=29.98 Aligned_cols=42 Identities=14% Similarity=0.073 Sum_probs=26.9
Q ss_pred CCCccEEEeccchhh--hccccHHHHHHHHHhCCCCCeEEEEeeccc
Q 027749 173 TRAIKLLVLDESDEM--LSRGFKDQIYDVYRYLPPDLQVCCPGSCFL 217 (219)
Q Consensus 173 ~~~l~~lVvDE~h~l--~~~~~~~~~~~i~~~~~~~~q~i~~SATl~ 217 (219)
..+.+++|+||+..+ .+..|...+..+++.. ..+|+-+.|+|
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecC
Confidence 456789999998766 3445777777777743 22444355553
No 423
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=68.94 E-value=2.7 Score=31.86 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+..+.+.||.|+|||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457899999999999543
No 424
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=68.88 E-value=2.4 Score=31.43 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
.+++.|+.|+|||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999554
No 425
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=68.70 E-value=2.5 Score=31.28 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.8
Q ss_pred cEEEEcCCCCchhHH
Q 027749 72 DVIAQAQSGTGKTSM 86 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~ 86 (219)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 468999999999944
No 426
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=68.65 E-value=32 Score=28.63 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhHHhHH
Q 027749 72 DVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~ 89 (219)
-+.+.++.|+|||.....
T Consensus 100 vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999955443
No 427
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=68.34 E-value=3.9 Score=33.39 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=14.8
Q ss_pred CCCc--EEEEcCCCCchhHHh
Q 027749 69 KGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~--~lv~~~tG~GKT~~~ 87 (219)
.|.+ ++..|+||+|||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4766 578899999999544
No 428
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=68.31 E-value=4 Score=29.54 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=30.0
Q ss_pred ccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEEe
Q 027749 176 IKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 176 l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
-.++++||.+.-++......+..+++.+....|+|+.|
T Consensus 87 ~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivit 124 (173)
T 3kta_B 87 APFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVIT 124 (173)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEE
Confidence 46899999998888766777777777776677877765
No 429
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=68.30 E-value=5 Score=31.65 Aligned_cols=36 Identities=19% Similarity=0.343 Sum_probs=23.2
Q ss_pred cEEEeccchhhhc------cccHHHHHHHHHhCCCCCeEEEEe
Q 027749 177 KLLVLDESDEMLS------RGFKDQIYDVYRYLPPDLQVCCPG 213 (219)
Q Consensus 177 ~~lVvDE~h~l~~------~~~~~~~~~i~~~~~~~~q~i~~S 213 (219)
-+||+||+|.+.+ ..+...+..+.+.. ++..+++.+
T Consensus 130 ~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~~~~il~g 171 (350)
T 2qen_A 130 FIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PNLKIILTG 171 (350)
T ss_dssp EEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TTEEEEEEE
T ss_pred EEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CCeEEEEEC
Confidence 3799999999875 23556666666654 345555543
No 430
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=67.79 E-value=2.6 Score=31.70 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=24.5
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~ 204 (219)
.+-+++++||--.-+|......+..+++.+.
T Consensus 150 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~ 180 (214)
T 1sgw_A 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180 (214)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHH
T ss_pred hCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 5567999999998888877777777777653
No 431
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=67.50 E-value=1.7 Score=33.34 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
..+++.|++|+|||...
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999544
No 432
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=67.44 E-value=7.5 Score=36.50 Aligned_cols=29 Identities=3% Similarity=-0.018 Sum_probs=21.4
Q ss_pred eEEEEECCcccHHHHHHhcCCCeEEEeCh
Q 027749 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTP 159 (219)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~I~v~Tp 159 (219)
++..+..+.....++..+..++.|+|+|-
T Consensus 237 ~~LlvlDd~~~~~~~~~~~~~~~ilvTtR 265 (1249)
T 3sfz_A 237 RSLLILDDVWDPWVLKAFDNQCQILLTTR 265 (1249)
T ss_dssp SCEEEEESCCCHHHHTTTCSSCEEEEEES
T ss_pred CEEEEEecCCCHHHHHhhcCCCEEEEEcC
Confidence 56666666666666667777899999994
No 433
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=67.02 E-value=2.5 Score=32.68 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=26.4
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
+-+++++||.-.-+|......+..++..+..+.-+|+.
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviiv 210 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIII 210 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 34699999998878776677777777776544434443
No 434
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=66.82 E-value=8.7 Score=35.67 Aligned_cols=90 Identities=17% Similarity=0.081 Sum_probs=61.6
Q ss_pred CceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHH---HhcCC---CeEEEeChHHHHHHHHcCCCCC
Q 027749 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLEHG---VHVVSGTPGRVCDMIKRKTLRT 173 (219)
Q Consensus 100 ~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~---~~I~v~Tp~~l~~~l~~~~~~~ 173 (219)
.+.++||.+++...+..+.+.+.+. .++++..++|+.+..++.. ....+ ++|+|+|. . -..++++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-----v-~~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-----I-GSEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-----C-TTCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-----h-hhcCCCc
Confidence 3457999999999998888877642 2678888898877654432 23333 89999993 1 2467899
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHh
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~ 202 (219)
..+..||+-+.+ ++.....+.+-+.
T Consensus 573 ~~~~~VI~~d~p----~~~~~~~Q~~GR~ 597 (968)
T 3dmq_A 573 QFASHMVMFDLP----FNPDLLEQRIGRL 597 (968)
T ss_dssp TTCCEEECSSCC----SSHHHHHHHHHTT
T ss_pred ccCcEEEEecCC----CCHHHHHHHhhcc
Confidence 999999887765 3334444444333
No 435
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=66.78 E-value=2.5 Score=32.42 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=26.1
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
.+-+++++||.-.-+|......+..+++.+..+.-+|+.
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviiv 200 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIII 200 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 445799999998877776667777776665333334443
No 436
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=66.64 E-value=2.9 Score=31.28 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
.+++.|+.|+|||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999554
No 437
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=66.61 E-value=5.5 Score=31.55 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.-+.+.||+|+|||...
T Consensus 101 ~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35779999999999544
No 438
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=66.59 E-value=2.4 Score=30.18 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=14.6
Q ss_pred hCCCcEEEEcCCCCchhH
Q 027749 68 IKGRDVIAQAQSGTGKTS 85 (219)
Q Consensus 68 ~~~~~~lv~~~tG~GKT~ 85 (219)
..|.-+.+.||.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 355668899999999993
No 439
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=66.52 E-value=1.2 Score=36.06 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=0.0
Q ss_pred ceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHh----cCCCeEEEeChHHHHHHHHcCCCCCCCc
Q 027749 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (219)
Q Consensus 101 ~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~I~v~Tp~~l~~~l~~~~~~~~~l 176 (219)
..++||.++++.-+..+.+.+.+. ++.+..++|+.+..++...+ ....+|+|+|. .+ ..++++..+
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gldi~~~ 328 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----hh-hcCCCcccC
Confidence 457999999999988888777653 56667777776654433222 13567899984 22 345677777
Q ss_pred cEEEec
Q 027749 177 KLLVLD 182 (219)
Q Consensus 177 ~~lVvD 182 (219)
++||.-
T Consensus 329 ~~Vi~~ 334 (394)
T 1fuu_A 329 SLVINY 334 (394)
T ss_dssp ------
T ss_pred CEEEEe
Confidence 776643
No 440
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=66.28 E-value=27 Score=30.04 Aligned_cols=80 Identities=8% Similarity=0.128 Sum_probs=50.0
Q ss_pred CCceeEEEEcCCHHHHHHHHHHHHHhccc----cceeEEEEECCccc--HHHHHHhcC-CCe---EEEeChHHHHHHHHc
Q 027749 99 SREVQALILSPTRELATQTEKVILAIGDF----INIQAHACVGGKSV--GEDIRKLEH-GVH---VVSGTPGRVCDMIKR 168 (219)
Q Consensus 99 ~~~~~~lil~P~~~l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~l~~-~~~---I~v~Tp~~l~~~l~~ 168 (219)
....++||.++++.-+..+.+.+.+.... .+-.+..+.|..+. ........+ +.+ |+|+|- + ..
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~-l~ 510 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----L-LT 510 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----T-TT
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----h-hh
Confidence 34568999999999999999999776432 11124445555442 111222332 223 777762 2 24
Q ss_pred CCCCCCCccEEEeccc
Q 027749 169 KTLRTRAIKLLVLDES 184 (219)
Q Consensus 169 ~~~~~~~l~~lVvDE~ 184 (219)
.++++..+.+||++..
T Consensus 511 ~GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 511 TGVDAPTCKNVVLARV 526 (590)
T ss_dssp TTCCCTTEEEEEEESC
T ss_pred cCccchheeEEEEEec
Confidence 6789999999998765
No 441
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=66.25 E-value=2.5 Score=33.07 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=21.6
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
.+-+++++||--.-+|......+..+++.+
T Consensus 160 ~~P~lLlLDEPts~LD~~~~~~i~~~l~~l 189 (275)
T 3gfo_A 160 MEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189 (275)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence 455799999988777776566666666655
No 442
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=66.11 E-value=2.8 Score=30.39 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
.+.+.|++|+|||...
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4779999999999554
No 443
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=66.10 E-value=3.4 Score=31.25 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=23.2
Q ss_pred CCccEEEeccchhhhccccHHHHHHH-HHhCCCCCeEEEE
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDV-YRYLPPDLQVCCP 212 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i-~~~~~~~~q~i~~ 212 (219)
.+-+++++||--.-+|......+... +..+..+.-+|+.
T Consensus 147 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~v 186 (229)
T 2pze_A 147 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 186 (229)
T ss_dssp SCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEE
T ss_pred cCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 44578999998877776555666554 3444333334433
No 444
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=65.96 E-value=4.6 Score=30.68 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchhHHhH
Q 027749 70 GRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~~ 88 (219)
...+++.|+.|+|||...-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4468999999999995543
No 445
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=65.90 E-value=7.2 Score=29.65 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=15.7
Q ss_pred cEEEEcCCCCchhHHhHHHH
Q 027749 72 DVIAQAQSGTGKTSMIALTV 91 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~ 91 (219)
++++.++.|.|||...+-..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58899999999996654433
No 446
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=65.59 E-value=3.1 Score=37.36 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
+.++++.||+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 468999999999999544
No 447
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=65.56 E-value=2.9 Score=35.80 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=29.4
Q ss_pred ccCccccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHH--hCCCcEEEEcCCCCchhHHh
Q 027749 31 AITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPI--IKGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 31 ~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~Q~~~~~~~--~~~~~~lv~~~tG~GKT~~~ 87 (219)
+-.+|+++.-.+.....+.+.- +..+ ..+..+ .-.+.+++.||+|+|||...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~-----~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCG-----GGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhch-----hhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 4457888766666666665421 1111 011111 11245999999999999444
No 448
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=65.27 E-value=3.2 Score=30.71 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=13.8
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.-+.+.|+.|+|||...
T Consensus 5 ~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVA 21 (218)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999544
No 449
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=64.75 E-value=3.4 Score=30.36 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHhH
Q 027749 72 DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~ 88 (219)
.+.+.|+.|||||.+.-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999995543
No 450
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=64.61 E-value=2.5 Score=32.35 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=22.2
Q ss_pred ccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEEE
Q 027749 176 IKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCCP 212 (219)
Q Consensus 176 l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~~ 212 (219)
-+++++||.-.-+|......+..++..+..+.-+|+.
T Consensus 158 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~v 194 (243)
T 1mv5_A 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVI 194 (243)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 3689999988777765555555555544333334433
No 451
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=64.43 E-value=3 Score=32.39 Aligned_cols=38 Identities=24% Similarity=0.107 Sum_probs=27.6
Q ss_pred ccEEEeccchhhhccccHHHHHHHHHhCCCC-CeEEEEe
Q 027749 176 IKLLVLDESDEMLSRGFKDQIYDVYRYLPPD-LQVCCPG 213 (219)
Q Consensus 176 l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~-~q~i~~S 213 (219)
-+++++||--.-+|......+..+++.+... .-+|+.|
T Consensus 183 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivt 221 (267)
T 2zu0_C 183 PELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVT 221 (267)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3699999998888887788888888887543 3344433
No 452
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=64.38 E-value=3 Score=32.28 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=21.7
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
.+-+++++||--.-+|......+..+++.+
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQL 199 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 445799999998777776566666666555
No 453
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=64.29 E-value=3.8 Score=31.56 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=22.6
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
.+-+++++||--.-+|......+..+++.+
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l 199 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLEL 199 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 455799999998877776667777776665
No 454
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=64.14 E-value=4.9 Score=27.53 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=12.0
Q ss_pred cEEEEcCCCCchh
Q 027749 72 DVIAQAQSGTGKT 84 (219)
Q Consensus 72 ~~lv~~~tG~GKT 84 (219)
.+++.|++|+|||
T Consensus 3 ki~v~G~~~~GKS 15 (161)
T 2dyk_A 3 KVVIVGRPNVGKS 15 (161)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5789999999999
No 455
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=64.09 E-value=3.3 Score=33.27 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=28.2
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCC-CCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~-~~q~i~~S 213 (219)
.+-+++++||.-.-++......+..++..+.. ..++|+.|
T Consensus 271 ~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~s 311 (339)
T 3qkt_A 271 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 311 (339)
T ss_dssp TTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45678999999887777667777777776543 44566554
No 456
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=64.01 E-value=3.9 Score=31.79 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=20.7
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
+-+++++||--.-+|......+..+++.+
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l 193 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQL 193 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 56789999987766665566666666655
No 457
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=63.96 E-value=2.5 Score=33.68 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=23.7
Q ss_pred CccEEEeccchhhhccccHHHHHHHHHhCCCCCeEEE
Q 027749 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCC 211 (219)
Q Consensus 175 ~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~~~q~i~ 211 (219)
+-+++|+||.-.-+|......+...++.+..+.-+|+
T Consensus 208 ~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~ 244 (306)
T 3nh6_A 208 APGIILLDEATSALDTSNERAIQASLAKVCANRTTIV 244 (306)
T ss_dssp CCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 3468999998777776556666666666544443443
No 458
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=63.91 E-value=3.7 Score=30.93 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=22.7
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
.+-+++++||--.-+|......+..+++.+
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~~~~~l~~l 186 (224)
T 2pcj_A 157 NEPILLFADEPTGNLDSANTKRVMDIFLKI 186 (224)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 455799999998877776667777776665
No 459
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.85 E-value=4 Score=31.10 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=26.4
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCC-CCCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~-~~~q~i~~S 213 (219)
.+-+++++||--.-+|......+..+++.+. .+.-+|+.|
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vt 196 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVE 196 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4557999999988787766666776666653 233344443
No 460
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.82 E-value=3.1 Score=37.37 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
++++.||+|+|||..+
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6999999999999554
No 461
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=63.65 E-value=8.2 Score=30.83 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchhHHhH
Q 027749 72 DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~ 88 (219)
-+.+.++.|+|||....
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999995543
No 462
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=63.51 E-value=3.2 Score=32.17 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
.+-+++++||--.-+|......+..+++.+
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 455799999998888876677777777665
No 463
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=63.48 E-value=3.4 Score=30.30 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.-+.+.|+.|+|||...
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34789999999999543
No 464
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=63.42 E-value=7.8 Score=30.82 Aligned_cols=18 Identities=11% Similarity=0.030 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
|.-+.|.||.|+|||...
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 345779999999999443
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=63.40 E-value=3.3 Score=32.29 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=29.2
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCCC--CCeEEEEe
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP--DLQVCCPG 213 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~--~~q~i~~S 213 (219)
.+-+++++||.-.-+|......+..+++.+.. +.-+|+.|
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivt 214 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLIT 214 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEEC
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEe
Confidence 45579999999988888778888888888754 34444443
No 466
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=63.26 E-value=3.6 Score=32.16 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
-+++.|+.|+|||...
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 467
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=63.23 E-value=18 Score=28.57 Aligned_cols=17 Identities=29% Similarity=0.435 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchhHHhH
Q 027749 72 DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~ 88 (219)
-+++.|++|+|||....
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 47799999999995543
No 468
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=63.17 E-value=5.3 Score=27.58 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=12.4
Q ss_pred cEEEEcCCCCchhH
Q 027749 72 DVIAQAQSGTGKTS 85 (219)
Q Consensus 72 ~~lv~~~tG~GKT~ 85 (219)
.+++.|++|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (170)
T 1ek0_A 5 KLVLLGEAAVGKSS 18 (170)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 58899999999993
No 469
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.00 E-value=3.4 Score=31.96 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=22.9
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhCC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~~ 204 (219)
.+-+++++||--.-+|......+..+++.+.
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 4557999999988777766666776666653
No 470
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=62.92 E-value=5.4 Score=28.50 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=12.9
Q ss_pred CcEEEEcCCCCchh
Q 027749 71 RDVIAQAQSGTGKT 84 (219)
Q Consensus 71 ~~~lv~~~tG~GKT 84 (219)
..+++.|++|+|||
T Consensus 49 ~~i~vvG~~g~GKS 62 (193)
T 2ged_A 49 PSIIIAGPQNSGKT 62 (193)
T ss_dssp CEEEEECCTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 47999999999999
No 471
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=62.36 E-value=4.3 Score=31.17 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=20.5
Q ss_pred EEEeccchhhhccccHHHHHHHHHhC
Q 027749 178 LLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 178 ~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
++++||--.-+|......+..+++.+
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l 179 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSAL 179 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHH
Confidence 99999998878776667777776665
No 472
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=62.36 E-value=6 Score=35.36 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=18.8
Q ss_pred HHHHHhCCCc--EEEEcCCCCchhHHh
Q 027749 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (219)
Q Consensus 63 ~~~~~~~~~~--~lv~~~tG~GKT~~~ 87 (219)
.+..+++|.| ++.-|+||+|||...
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5566778876 556699999999543
No 473
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=62.30 E-value=4.4 Score=31.07 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=26.9
Q ss_pred ccEEEeccchhhhccccHHHHHHHHHhCCC-CCeEEEEe
Q 027749 176 IKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVCCPG 213 (219)
Q Consensus 176 l~~lVvDE~h~l~~~~~~~~~~~i~~~~~~-~~q~i~~S 213 (219)
-+++++||--.-+|......+..+++.+.. +.-+|+.|
T Consensus 162 p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vt 200 (250)
T 2d2e_A 162 PTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVIT 200 (250)
T ss_dssp CSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEEC
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 469999999988888777777777777643 33344443
No 474
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=62.11 E-value=5 Score=32.38 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchhHHhHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~ 89 (219)
.+..+++.||+|+|||.....
T Consensus 122 ~gsviLI~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 445679999999999954443
No 475
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=62.10 E-value=3.6 Score=31.97 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=22.7
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
.+-+++++||--.-+|......+..+++.+
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l 205 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 455799999998878876666777776665
No 476
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=62.02 E-value=3.5 Score=32.34 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=20.8
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
.+-+++++||--.-+|......+..+++.+
T Consensus 178 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l 207 (279)
T 2ihy_A 178 GQPQVLILDEPAAGLDFIARESLLSILDSL 207 (279)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 445789999988777765556666665554
No 477
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=62.00 E-value=5.7 Score=27.37 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchhHHhHHHHH
Q 027749 72 DVIAQAQSGTGKTSMIALTVC 92 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~ 92 (219)
.+++.|++|+||| +++-.++
T Consensus 7 ~i~v~G~~~~GKs-sl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKS-SMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHH-HHHHHHH
T ss_pred EEEEECcCCCCHH-HHHHHHH
Confidence 5889999999999 3333333
No 478
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=61.92 E-value=47 Score=25.56 Aligned_cols=95 Identities=11% Similarity=0.072 Sum_probs=59.0
Q ss_pred CCCCchhHHhHHHHHhhhccCCCceeEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHH---hcC--CC
Q 027749 78 QSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---LEH--GV 152 (219)
Q Consensus 78 ~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~--~~ 152 (219)
...+||. ..+.-++..+... +.++||.+.+...+..+...+.+.. ++.+..+.|+.+..++... ... ++
T Consensus 92 ~~~s~K~-~~L~~ll~~~~~~--~~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 165 (271)
T 1z5z_A 92 VRRSGKM-IRTMEIIEEALDE--GDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQNNPSV 165 (271)
T ss_dssp STTCHHH-HHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHHHHHHHHHHHHHCTTC
T ss_pred cccCHHH-HHHHHHHHHHHhC--CCeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 3567887 4445555554333 3469999999999888888876531 4566677887765544332 222 34
Q ss_pred e-EEEeChHHHHHHHHcCCCCCCCccEEEeccc
Q 027749 153 H-VVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (219)
Q Consensus 153 ~-I~v~Tp~~l~~~l~~~~~~~~~l~~lVvDE~ 184 (219)
. ++++|-. -..++++.....||+=+.
T Consensus 166 ~v~L~st~~------~g~Glnl~~a~~VI~~d~ 192 (271)
T 1z5z_A 166 KFIVLSVKA------GGFGINLTSANRVIHFDR 192 (271)
T ss_dssp CEEEEECCT------TCCCCCCTTCSEEEECSC
T ss_pred CEEEEehhh------hcCCcCcccCCEEEEECC
Confidence 5 4555521 245678888887766444
No 479
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=61.67 E-value=37 Score=31.01 Aligned_cols=73 Identities=15% Similarity=0.018 Sum_probs=47.1
Q ss_pred eEEEEcCCHHHHHHHHHHHHHhccccceeEEEEECCcccHHHHHHhc--CCCeEEEeChHHHHHHHHcCCCCCC------
Q 027749 103 QALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE--HGVHVVSGTPGRVCDMIKRKTLRTR------ 174 (219)
Q Consensus 103 ~~lil~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~I~v~Tp~~l~~~l~~~~~~~~------ 174 (219)
.+||.+.|.+-++.+...+.+. ++.+..++|+....+...... +...|+|+|. + -.+++++.
T Consensus 434 pvLVft~s~~~se~Ls~~L~~~----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIATd-----m-AgRG~DI~l~~~V~ 503 (844)
T 1tf5_A 434 PVLVGTVAVETSELISKLLKNK----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN-----M-AGRGTDIKLGEGVK 503 (844)
T ss_dssp CEEEEESCHHHHHHHHHHHHTT----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET-----T-SSTTCCCCCCTTSG
T ss_pred cEEEEECCHHHHHHHHHHHHHC----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeCC-----c-cccCcCccccchhh
Confidence 4999999999998888777654 677777887765444322221 1357999994 2 24556665
Q ss_pred --CccEEEeccch
Q 027749 175 --AIKLLVLDESD 185 (219)
Q Consensus 175 --~l~~lVvDE~h 185 (219)
...+||-=|.|
T Consensus 504 ~~ggl~VIn~d~p 516 (844)
T 1tf5_A 504 ELGGLAVVGTERH 516 (844)
T ss_dssp GGTSEEEEESSCC
T ss_pred hcCCcEEEEecCC
Confidence 44466655555
No 480
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=61.65 E-value=6.2 Score=36.02 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
++++.||+|+|||..+
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999544
No 481
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=61.63 E-value=31 Score=28.79 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchhHHhHH
Q 027749 72 DVIAQAQSGTGKTSMIAL 89 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~ 89 (219)
.+++.++.|+|||....-
T Consensus 102 vI~ivG~~GvGKTT~a~~ 119 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGK 119 (433)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999965544
No 482
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=61.53 E-value=4.5 Score=31.14 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCccEEEeccchhhhccccHHHHHHHHHhC
Q 027749 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (219)
Q Consensus 174 ~~l~~lVvDE~h~l~~~~~~~~~~~i~~~~ 203 (219)
.+-+++++||--.-+|......+..++..+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l 174 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDL 174 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 445789999988777776666666666665
No 483
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=61.46 E-value=8.7 Score=28.03 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCCchhHHh
Q 027749 70 GRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 70 ~~~~lv~~~tG~GKT~~~ 87 (219)
|..+.+.||.|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 345789999999999543
No 484
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=61.45 E-value=20 Score=26.65 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|.-+++.|+.|+|||...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEEcCCCCCHHHHH
Confidence 4667889999999999544
No 485
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=61.45 E-value=5.5 Score=27.24 Aligned_cols=14 Identities=21% Similarity=0.565 Sum_probs=12.4
Q ss_pred cEEEEcCCCCchhH
Q 027749 72 DVIAQAQSGTGKTS 85 (219)
Q Consensus 72 ~~lv~~~tG~GKT~ 85 (219)
.+++.|++|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (166)
T 2ce2_X 5 KLVVVGAGGVGKSA 18 (166)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 58899999999993
No 486
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=61.43 E-value=5.5 Score=27.53 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=12.1
Q ss_pred cEEEEcCCCCchh
Q 027749 72 DVIAQAQSGTGKT 84 (219)
Q Consensus 72 ~~lv~~~tG~GKT 84 (219)
.+++.|++|+|||
T Consensus 5 ~i~v~G~~~~GKs 17 (170)
T 1g16_A 5 KILLIGDSGVGKS 17 (170)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 5789999999999
No 487
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=61.30 E-value=5.7 Score=29.09 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=13.2
Q ss_pred CcEEEEcCCCCchhH
Q 027749 71 RDVIAQAQSGTGKTS 85 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~ 85 (219)
..+++.|++|+|||.
T Consensus 13 ~~i~~~G~~g~GKTs 27 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTS 27 (218)
T ss_dssp CEEEEECSTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 468999999999993
No 488
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=61.21 E-value=5.9 Score=27.34 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=14.8
Q ss_pred cEEEEcCCCCchhHHhHHHHH
Q 027749 72 DVIAQAQSGTGKTSMIALTVC 92 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~~~~~ 92 (219)
.+++.|++|+||| +++-.++
T Consensus 8 ~i~v~G~~~~GKS-sli~~l~ 27 (170)
T 1z0j_A 8 KVCLLGDTGVGKS-SIMWRFV 27 (170)
T ss_dssp EEEEECCTTSSHH-HHHHHHH
T ss_pred EEEEECcCCCCHH-HHHHHHH
Confidence 5899999999999 3333333
No 489
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=61.15 E-value=3.9 Score=30.70 Aligned_cols=17 Identities=29% Similarity=0.493 Sum_probs=13.9
Q ss_pred CCCcEEEEcCCCCchhH
Q 027749 69 KGRDVIAQAQSGTGKTS 85 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~ 85 (219)
.|.-+.+.|+.|+|||.
T Consensus 19 ~g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CCEEEEEECSTTSCHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 34567899999999994
No 490
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=61.14 E-value=4.8 Score=30.27 Aligned_cols=20 Identities=15% Similarity=0.327 Sum_probs=15.8
Q ss_pred CCCcEEEEcCCCCchhHHhH
Q 027749 69 KGRDVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~ 88 (219)
.+..+.+.|+.|+|||...-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45568899999999996543
No 491
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=61.03 E-value=5.9 Score=27.71 Aligned_cols=14 Identities=57% Similarity=0.719 Sum_probs=12.6
Q ss_pred cEEEEcCCCCchhH
Q 027749 72 DVIAQAQSGTGKTS 85 (219)
Q Consensus 72 ~~lv~~~tG~GKT~ 85 (219)
.+++.|++|+|||.
T Consensus 10 ~i~v~G~~~~GKSs 23 (182)
T 1ky3_A 10 KVIILGDSGVGKTS 23 (182)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 68999999999993
No 492
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=60.84 E-value=7.8 Score=31.57 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCchhHHh
Q 027749 71 RDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 71 ~~~lv~~~tG~GKT~~~ 87 (219)
.-+.+.||+|+|||...
T Consensus 158 ~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 34779999999999544
No 493
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=60.78 E-value=3.6 Score=31.23 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.|.-+-+.||.|+|||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3445779999999999554
No 494
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=60.59 E-value=5.5 Score=32.73 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCchhHHh
Q 027749 69 KGRDVIAQAQSGTGKTSMI 87 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~ 87 (219)
.++.+++.||.|+|||...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667899999999999443
No 495
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=60.54 E-value=4.4 Score=30.89 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchhHHhH
Q 027749 72 DVIAQAQSGTGKTSMIA 88 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~~ 88 (219)
-+.|.|+.|+|||...-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47799999999996543
No 496
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=60.49 E-value=6.2 Score=27.03 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=12.5
Q ss_pred cEEEEcCCCCchhH
Q 027749 72 DVIAQAQSGTGKTS 85 (219)
Q Consensus 72 ~~lv~~~tG~GKT~ 85 (219)
.+++.|++|+|||.
T Consensus 5 ~i~v~G~~~~GKSs 18 (167)
T 1kao_A 5 KVVVLGSGGVGKSA 18 (167)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 58999999999993
No 497
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=60.47 E-value=4.3 Score=31.98 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=12.8
Q ss_pred cEEEEcCCCCchhHHh
Q 027749 72 DVIAQAQSGTGKTSMI 87 (219)
Q Consensus 72 ~~lv~~~tG~GKT~~~ 87 (219)
-+.|.|++|+|||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3668999999999544
No 498
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=60.27 E-value=25 Score=26.25 Aligned_cols=48 Identities=15% Similarity=0.307 Sum_probs=27.2
Q ss_pred CCCcEEEEcCCCCchhHHhHHHHHhhhccCCCceeEEEEcCC--HHHHHHHHHHH
Q 027749 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT--RELATQTEKVI 121 (219)
Q Consensus 69 ~~~~~lv~~~tG~GKT~~~~~~~~~~~~~~~~~~~~lil~P~--~~l~~q~~~~~ 121 (219)
+|+-+++.|+.|+|||...-. +.+.+.. ...++--|. ..+...+.+.+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~-l~~~l~~----~~~~~~ep~~~t~~g~~ir~~l 53 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNI-LYKKLQP----NCKLLKFPERSTRIGGLINEYL 53 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHH-HHHHHCS----SEEEEESSCTTSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHhcc----cceEEEecCCCChHHHHHHHHH
Confidence 467789999999999954433 3344332 123444562 34444444443
No 499
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=60.20 E-value=6.3 Score=27.52 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=12.2
Q ss_pred cEEEEcCCCCchh
Q 027749 72 DVIAQAQSGTGKT 84 (219)
Q Consensus 72 ~~lv~~~tG~GKT 84 (219)
.+++.|++|+|||
T Consensus 9 ~i~v~G~~~~GKS 21 (177)
T 1wms_A 9 KVILLGDGGVGKS 21 (177)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 500
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=59.97 E-value=6.5 Score=26.96 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=12.6
Q ss_pred cEEEEcCCCCchhH
Q 027749 72 DVIAQAQSGTGKTS 85 (219)
Q Consensus 72 ~~lv~~~tG~GKT~ 85 (219)
.+++.|++|+|||.
T Consensus 6 ~i~v~G~~~~GKss 19 (168)
T 1u8z_A 6 KVIMVGSGGVGKSA 19 (168)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 58999999999993
Done!