BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027750
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DAG|H Chain H, Structure Of The Human Metapneumovirus Fusion Protein With
Neutralizing Antibody Identifies A Pneumovirus Antigenic
Site
Length = 220
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 66 HRSLDDVRMNLEVLKYCATVLFLESGLPDIFTVNRWEMCSAASVSEGSS 114
H ++ +R+ + YCA VL SG+PD F + W + +VS S+
Sbjct: 79 HLQMNSLRVEDTAIYYCARVLSRASGMPDAFDI--WGPGTMVTVSSAST 125
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 52 LASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGLPDI 95
L LAT LG+ + + L +R +L++L +L E GLPD+
Sbjct: 216 LERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDL 259
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 52 LASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGLPDI 95
L LAT LG+ + + L +R +L++L +L E GLPD+
Sbjct: 332 LERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDL 375
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 52 LASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGLPDI 95
L LAT LG+ + + L +R +L++L +L E GLPD+
Sbjct: 332 LERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDL 375
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex
pdb|1NNE|B Chain B, Crystal Structure Of The Muts-adpbef3-dna Complex
Length = 765
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 52 LASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGLPDI 95
L LAT LG+ + + L +R +L++L +L E GLPD+
Sbjct: 332 LERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDL 375
>pdb|2QGM|A Chain A, Crystal Structure Of Succinoglycan Biosynthesis Protein At
The Resolution 1.7 A. Northeast Structural Genomics
Consortium Target Bcr136
Length = 445
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 40 KTLEELQPYSTLLASLATYFGLGQQTHRSLDDVRMNLEVLKYCAT 84
K E+L+P + + A Y GLG+ TH S + ++KY T
Sbjct: 59 KPFEDLKPLKKXIGN-AQYVGLGENTHGSSEIFTXKFRLVKYLVT 102
>pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From
Methanobacterium Thermoautotrophicum
Length = 208
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 87 FLESGLPDIFTV--NRWEMCSAASVSEGSSGYARFMEPDELYCSRLKIRYGISTRFVDQA 144
+E LP +TV R E+ V G S PD+ C R+ R+ ++ + +
Sbjct: 87 LMERILPGPYTVVLERNELI--PDVITGGSSRVGIRVPDDEICRRIAARFPVTATSANIS 144
Query: 145 GR---PRLSFVVDASQSLCTVLDA 165
G+ PRL +V ++ VLDA
Sbjct: 145 GKPPSPRLEEIVRDLDAVDLVLDA 168
>pdb|2PGG|A Chain A, Crystal Structure Of A Birnavirus (Ibdv) Rna-Dependent Rna
Polymerase Vp1
Length = 774
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 42 LEELQPYSTLLASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGL-PDIF--TV 98
+ + +P S S+ G+ + RS+DD+R L L A +L G+ P+ TV
Sbjct: 477 MRQPRPDSEEFKSIEDKLGINFKIERSIDDIRGKLRQLVLLAQPGYLSGGVEPEQSSPTV 536
Query: 99 NRWEMCSAASVSEGSSGYARFMEPDELYCSRLKIRYGISTRFVDQAGRPRLSFVVDASQS 158
+ +A+ S+ Y ++ + L+CS + G+ + + +S
Sbjct: 537 ELDLLGWSATYSKDLGIYVPVLDKERLFCSAAYPK-GVENKSL---------------KS 580
Query: 159 LCTVLDACEVVAKKLFEDSRSNSEWN-PVVTRQSGNDPAARLRNLGYRG 206
+ A +VV +E R WN P++ + N+ A R+L +G
Sbjct: 581 KVGIEQAYKVVR---YEALRLVGGWNYPLLNKACKNNAGAARRHLEAKG 626
>pdb|2PUS|A Chain A, Unprecedented Activation Mechanism Of A Non-Canonical
Rna-Dependent Rna Polymerase
pdb|2QJ1|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase Incubated With An Oligopeptide Mimicking The
Vp3 C-Terminus
pdb|2R70|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase, Cocrystallized With An Oligopeptide
Mimicking The Vp3 C-Terminus.
pdb|2R72|A Chain A, Crystal Structure Of Infectious Bursal Disease Virus Vp1
Polymerase, Incubated With Mg2+ Ion
Length = 852
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 23/169 (13%)
Query: 42 LEELQPYSTLLASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGL-PDIF--TV 98
+ + +P S S+ G+ + RS+DD+R L L A +L G+ P+ TV
Sbjct: 514 MRQPRPDSEEFKSIEDKLGINFKIERSIDDIRGKLRQLVLLAQPGYLSGGVEPEQSSPTV 573
Query: 99 NRWEMCSAASVSEGSSGYARFMEPDELYCSRLKIRYGISTRFVDQAGRPRLSFVVDASQS 158
+ +A+ S+ Y ++ + L+CS + G+ + + +S
Sbjct: 574 ELDLLGWSATYSKDLGIYVPVLDKERLFCSAAYPK-GVENKSL---------------KS 617
Query: 159 LCTVLDACEVVAKKLFEDSRSNSEWN-PVVTRQSGNDPAARLRNLGYRG 206
+ A +VV +E R WN P++ + N+ A R+L +G
Sbjct: 618 KVGIEQAYKVVR---YEALRLVGGWNYPLLNKACKNNAGAARRHLEAKG 663
>pdb|3FQD|B Chain B, Crystal Structure Of The S. Pombe Rat1-Rai1 Complex
Length = 352
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 90 SGLPDIFTVNRWEMCSAASVSEGSSGYARFMEPDELYCSRLKIRYGIS 137
S LP+I W+ CS + + + + + PDE YCS +KI G S
Sbjct: 153 STLPEI-----WDACSRDQIEQRDN---QDVVPDEQYCSIVKINIGKS 192
>pdb|3FQG|A Chain A, Crystal Structure Of The S. Pombe Rai1
Length = 360
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 90 SGLPDIFTVNRWEMCSAASVSEGSSGYARFMEPDELYCSRLKIRYGIS 137
S LP+I W+ CS + + + + + PDE YCS +KI G S
Sbjct: 153 STLPEI-----WDACSRDQIEQRDN---QDVVPDEQYCSIVKINIGKS 192
>pdb|1C07|A Chain A, Structure Of The Third Eps15 Homology Domain Of Human
Eps15
Length = 95
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 53 ASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGLPDIFTVNRWEMC 104
A A Y + +T + +D LEV + +FL++GLP + W +C
Sbjct: 7 AEKAKYDEIFLKTDKDMDGFVSGLEVRE-----IFLKTGLPSTLLAHIWSLC 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,246,015
Number of Sequences: 62578
Number of extensions: 226436
Number of successful extensions: 440
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 17
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)