BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027752
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q64GL0|EVL_XENLA Ena/VASP-like protein OS=Xenopus laevis GN=evl PE=2 SV=1
Length = 692
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 69 LTRGKWRPRLLVFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAA 128
LT+ +P F SS S S F SLP AVSELT+ K P S+ +
Sbjct: 399 LTQASPQP----FQSSTHPSQQSYQSMSHFVSLPPPYAAVSELTLPKRTTPYMTSSTITQ 454
Query: 129 YAPDLAP-FMSDEAMGAAL 146
++P L P S AM A++
Sbjct: 455 FSPVLPPGHPSSAAMVASV 473
>sp|Q741E5|UVRC_MYCPA UvrABC system protein C OS=Mycobacterium paratuberculosis (strain
ATCC BAA-968 / K-10) GN=uvrC PE=3 SV=1
Length = 647
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPD 132
F S+ L +A V ++T + G+G ATA+AVL A PD
Sbjct: 606 FGSIARLKEATVDQITAVPGIGVATATAVLEALRPD 641
>sp|B2HP72|UVRC_MYCMM UvrABC system protein C OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=uvrC PE=3 SV=1
Length = 647
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPD 132
F S+ L +A V ++T + G+G ATA+AVL A PD
Sbjct: 606 FGSIARLKEATVDQITAVPGIGVATATAVLEALRPD 641
>sp|B1W3G3|RUVA_STRGG Holliday junction ATP-dependent DNA helicase RuvA OS=Streptomyces
griseus subsp. griseus (strain JCM 4626 / NBRC 13350)
GN=ruvA PE=3 SV=1
Length = 208
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 111 LTVLKGVGPATASAVLAAYAPD---LAPFMSDE-AMGAALGHSKDYSLKQYLLFADKLQA 166
L GVGP A A+LA ++PD LA DE A+ A G K + K L D+L
Sbjct: 74 LQTASGVGPRLAQAMLATHSPDALRLAVSTGDEKALTAVSGIGKKGAQKLLLELKDRLGE 133
Query: 167 KAKELVSEENCFTPF 181
+ ++ TP
Sbjct: 134 PVGAHIGQQGIGTPV 148
>sp|Q7MW36|RUVA_PORGI Holliday junction ATP-dependent DNA helicase RuvA OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=ruvA PE=3 SV=1
Length = 202
Score = 31.6 bits (70), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 109 SELTVLKGVGPATASAVLAAYAP-DLAPFMS 138
+LT + GVGP TA +L++YAP +LA ++
Sbjct: 72 GQLTSVSGVGPTTAQLILSSYAPQELAALIT 102
>sp|Q9XI23|BOR4_ARATH Boron transporter 4 OS=Arabidopsis thaliana GN=BOR4 PE=2 SV=1
Length = 683
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 15/105 (14%)
Query: 67 WKLTRGKWR--------PRLLVFVSSLDDSSVK----SASEKAFKSLPDLTKAVSELTVL 114
W+ G +R P ++V ++L S+ + F LP + ++S TV+
Sbjct: 229 WRYGTGWYRSFIADYGVPLMVVVWTALSFSTPSKLPSGVPRRLFSPLPWDSPSLSHWTVI 288
Query: 115 KGVGPATASAVLAAYAPDL---APFMSDEAMGAALGHSKDYSLKQ 156
K +G + + AA+ P L + D ++ + L K+++LK+
Sbjct: 289 KDMGKVSPGYIFAAFIPALMIAGLYFFDHSVASQLAQQKEFNLKK 333
>sp|Q9CCP1|UVRC_MYCLE UvrABC system protein C OS=Mycobacterium leprae (strain TN) GN=uvrC
PE=3 SV=1
Length = 647
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPD 132
F S+ L A V ++T + G+G ATA+AVL A PD
Sbjct: 606 FGSIARLKDATVEQITAVPGIGVATATAVLEALRPD 641
>sp|B8ZUN5|UVRC_MYCLB UvrABC system protein C OS=Mycobacterium leprae (strain Br4923)
GN=uvrC PE=3 SV=1
Length = 647
Score = 31.2 bits (69), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 98 FKSLPDLTKA-VSELTVLKGVGPATASAVLAAYAPD 132
F S+ L A V ++T + G+G ATA+AVL A PD
Sbjct: 606 FGSIARLKDATVEQITAVPGIGVATATAVLEALRPD 641
>sp|B2RJ07|RUVA_PORG3 Holliday junction ATP-dependent DNA helicase RuvA OS=Porphyromonas
gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257)
GN=ruvA PE=3 SV=1
Length = 202
Score = 31.2 bits (69), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 109 SELTVLKGVGPATASAVLAAYAP-DLAPFMS 138
+LT + GVGP TA +L++YAP +LA ++
Sbjct: 72 GQLTSVSGVGPTTARLILSSYAPQELAALIT 102
>sp|Q54K57|TPSA_DICDI Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A
OS=Dictyostelium discoideum GN=tpsA PE=2 SV=1
Length = 733
Score = 30.8 bits (68), Expect = 7.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 11 NKWKEALASYEACVESLNKPN-LISLDDYYRKELPSLIHQRNPNPHI 56
N + EA + + V + KPN L+ + DY+ LP ++ Q+ P+ I
Sbjct: 126 NSYVEANEQFSSVVAEILKPNDLVWVHDYHMMLLPEILKQKKPDARI 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,265,453
Number of Sequences: 539616
Number of extensions: 2736011
Number of successful extensions: 7397
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 7392
Number of HSP's gapped (non-prelim): 18
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)