Query 027752
Match_columns 219
No_of_seqs 112 out of 149
Neff 5.1
Searched_HMMs 29240
Date Tue Mar 26 01:06:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fhg_A Mjogg, N-glycosylase/DN 98.0 7.7E-05 2.6E-09 62.9 11.6 85 103-193 111-203 (207)
2 3fhf_A Mjogg, N-glycosylase/DN 97.9 0.00021 7.2E-09 61.1 12.9 89 98-193 113-210 (214)
3 3n0u_A Probable N-glycosylase/ 97.7 0.00034 1.2E-08 59.9 11.4 84 103-192 123-214 (219)
4 2xhi_A N-glycosylase/DNA lyase 96.3 0.042 1.4E-06 50.0 11.9 61 103-164 247-318 (360)
5 3s6i_A DNA-3-methyladenine gly 96.1 0.012 4.2E-07 50.2 6.9 55 104-159 134-194 (228)
6 4e9f_A Methyl-CPG-binding doma 95.9 0.0043 1.5E-07 50.7 2.9 73 57-132 44-127 (161)
7 3i0w_A 8-oxoguanine-DNA-glycos 95.7 0.0069 2.4E-07 53.5 3.8 38 103-142 205-244 (290)
8 2h56_A DNA-3-methyladenine gly 95.7 0.019 6.5E-07 49.0 6.4 37 105-142 134-172 (233)
9 4b21_A Probable DNA-3-methylad 95.5 0.034 1.2E-06 47.6 7.4 33 104-136 145-179 (232)
10 1mpg_A ALKA, 3-methyladenine D 94.9 0.045 1.5E-06 47.7 6.4 44 103-147 201-246 (282)
11 2yg9_A DNA-3-methyladenine gly 94.9 0.021 7.1E-07 48.6 4.1 33 103-135 140-174 (225)
12 3n5n_X A/G-specific adenine DN 94.8 0.071 2.4E-06 47.3 7.5 35 107-142 126-161 (287)
13 1pu6_A 3-methyladenine DNA gly 94.3 0.032 1.1E-06 47.1 3.8 27 104-130 116-142 (218)
14 1kea_A Possible G-T mismatches 94.1 0.054 1.8E-06 45.7 4.8 25 106-130 112-136 (221)
15 2abk_A Endonuclease III; DNA-r 94.0 0.12 4.1E-06 43.2 6.8 24 106-129 106-129 (211)
16 2jhn_A ALKA, 3-methyladenine D 93.7 0.051 1.7E-06 47.8 4.1 37 105-142 206-243 (295)
17 1orn_A Endonuclease III; DNA r 93.2 0.08 2.7E-06 44.9 4.4 36 106-143 110-147 (226)
18 1kg2_A A/G-specific adenine gl 93.0 0.088 3E-06 44.4 4.4 24 106-129 106-129 (225)
19 3fsp_A A/G-specific adenine gl 92.4 0.11 3.7E-06 46.7 4.4 38 106-143 115-152 (369)
20 3arc_U Photosystem II 12 kDa e 91.7 0.045 1.5E-06 41.4 0.8 37 106-147 23-59 (97)
21 1s5l_U Photosystem II 12 kDa e 91.5 0.048 1.6E-06 43.7 0.8 38 106-148 60-97 (134)
22 2duy_A Competence protein come 88.7 0.24 8.1E-06 34.6 2.4 36 107-147 25-60 (75)
23 2a1j_B DNA excision repair pro 87.7 0.96 3.3E-05 32.6 5.3 42 83-129 11-52 (91)
24 2i5h_A Hypothetical protein AF 87.7 0.13 4.4E-06 43.9 0.6 63 78-147 106-169 (205)
25 1x2i_A HEF helicase/nuclease; 86.7 0.46 1.6E-05 32.4 2.9 23 108-130 45-67 (75)
26 2ztd_A Holliday junction ATP-d 83.5 0.49 1.7E-05 40.2 2.2 29 104-132 83-111 (212)
27 2edu_A Kinesin-like protein KI 81.3 0.45 1.6E-05 35.0 1.0 49 107-160 38-86 (98)
28 1kft_A UVRC, excinuclease ABC 81.2 1.3 4.4E-05 31.0 3.3 22 108-129 55-76 (78)
29 1ixr_A Holliday junction DNA h 80.5 0.93 3.2E-05 37.7 2.7 27 105-131 68-94 (191)
30 2a1j_A DNA repair endonuclease 78.4 0.74 2.5E-05 31.5 1.3 22 107-128 2-23 (63)
31 1z00_A DNA excision repair pro 77.4 1.9 6.4E-05 30.8 3.2 24 106-129 16-39 (89)
32 1x2i_A HEF helicase/nuclease; 77.2 2.1 7.3E-05 28.9 3.4 24 106-129 11-34 (75)
33 1cuk_A RUVA protein; DNA repai 76.7 1.3 4.4E-05 37.2 2.5 27 105-131 69-95 (203)
34 1z00_A DNA excision repair pro 76.3 1.8 6E-05 31.0 2.8 23 108-130 50-72 (89)
35 2a1j_B DNA excision repair pro 75.2 1.8 6.1E-05 31.1 2.7 23 108-130 63-85 (91)
36 3u5c_S 40S ribosomal protein S 74.8 2.3 7.8E-05 34.3 3.4 50 105-154 26-81 (146)
37 1kft_A UVRC, excinuclease ABC 72.6 1.6 5.6E-05 30.4 1.8 21 109-129 24-44 (78)
38 3r8n_M 30S ribosomal protein S 71.7 4.7 0.00016 31.1 4.4 39 105-143 12-53 (114)
39 1z00_B DNA repair endonuclease 69.1 3.4 0.00011 30.0 2.9 23 106-128 15-37 (84)
40 3vdp_A Recombination protein R 68.7 2.6 8.8E-05 36.0 2.5 22 104-125 21-42 (212)
41 2bcq_A DNA polymerase lambda; 66.0 2.1 7.1E-05 38.4 1.5 32 99-130 47-78 (335)
42 2fmp_A DNA polymerase beta; nu 65.0 2.3 7.9E-05 38.0 1.6 33 98-130 46-78 (335)
43 3mab_A Uncharacterized protein 64.8 2.7 9.2E-05 31.3 1.7 23 107-129 2-24 (93)
44 3j20_O 30S ribosomal protein S 62.9 7.4 0.00025 31.3 4.0 39 105-143 19-60 (148)
45 2xzm_M RPS18E; ribosome, trans 62.9 8.2 0.00028 31.3 4.3 40 105-144 26-68 (155)
46 2fmp_A DNA polymerase beta; nu 61.4 4.4 0.00015 36.2 2.7 24 105-128 94-117 (335)
47 3iz6_M 40S ribosomal protein S 61.2 3.3 0.00011 33.6 1.7 52 103-154 22-79 (152)
48 1vdd_A Recombination protein R 60.8 4.5 0.00015 34.9 2.5 22 104-125 7-28 (228)
49 3ory_A Flap endonuclease 1; hy 60.6 16 0.00055 32.9 6.3 71 113-191 255-341 (363)
50 2w9m_A Polymerase X; SAXS, DNA 60.4 5 0.00017 38.2 3.0 24 105-128 93-116 (578)
51 2vqe_M 30S ribosomal protein S 58.4 7.5 0.00026 30.5 3.3 41 105-145 13-56 (126)
52 3bqs_A Uncharacterized protein 58.2 16 0.00054 27.0 4.9 53 108-160 3-58 (93)
53 1vq8_Y 50S ribosomal protein L 58.2 2.1 7.1E-05 36.9 0.0 23 106-128 12-34 (241)
54 2ihm_A POL MU, DNA polymerase 58.2 6 0.0002 35.7 3.0 26 103-128 96-121 (360)
55 3b0x_A DNA polymerase beta fam 56.0 6.4 0.00022 37.3 3.0 24 105-128 89-112 (575)
56 2ztd_A Holliday junction ATP-d 54.2 25 0.00086 29.6 6.1 26 108-133 122-147 (212)
57 1jms_A Terminal deoxynucleotid 53.7 7.8 0.00027 35.3 3.0 25 104-128 116-140 (381)
58 2bcq_A DNA polymerase lambda; 52.7 7 0.00024 34.9 2.5 22 107-128 94-115 (335)
59 2ihm_A POL MU, DNA polymerase 52.5 3.4 0.00012 37.3 0.4 32 99-130 51-82 (360)
60 1wcn_A Transcription elongatio 52.1 1.3 4.3E-05 31.2 -2.0 51 88-140 18-69 (70)
61 1ci4_A Protein (barrier-TO-aut 49.2 6.5 0.00022 29.3 1.4 20 110-129 19-38 (89)
62 2bgw_A XPF endonuclease; hydro 47.3 11 0.00039 30.8 2.8 23 108-130 161-183 (219)
63 1jms_A Terminal deoxynucleotid 44.8 5.4 0.00019 36.3 0.5 33 98-130 69-101 (381)
64 3psf_A Transcription elongatio 44.1 18 0.00063 37.2 4.3 35 108-142 716-750 (1030)
65 2kp7_A Crossover junction endo 44.0 7.1 0.00024 28.5 0.9 29 99-127 48-76 (87)
66 2nrt_A Uvrabc system protein C 43.1 13 0.00043 31.7 2.5 22 108-129 167-188 (220)
67 4gfj_A Topoisomerase V; helix- 39.1 15 0.00051 35.1 2.5 21 108-128 467-487 (685)
68 3psi_A Transcription elongatio 38.3 20 0.0007 37.5 3.6 36 108-143 713-748 (1219)
69 1ixr_A Holliday junction DNA h 37.7 18 0.00061 29.9 2.5 25 107-131 105-129 (191)
70 1cuk_A RUVA protein; DNA repai 35.6 20 0.00067 29.9 2.5 42 79-129 87-128 (203)
71 3oao_A Uncharacterized protein 33.2 33 0.0011 27.3 3.4 62 54-120 78-143 (147)
72 3c65_A Uvrabc system protein C 31.6 9.9 0.00034 32.5 0.0 22 108-129 172-193 (226)
73 1b22_A DNA repair protein RAD5 31.0 26 0.00089 26.7 2.3 43 87-129 35-78 (114)
74 2bgw_A XPF endonuclease; hydro 28.9 31 0.001 28.2 2.6 23 107-129 192-214 (219)
75 2w9m_A Polymerase X; SAXS, DNA 28.3 24 0.00081 33.5 2.0 41 88-128 108-150 (578)
76 1exn_A 5'-exonuclease, 5'-nucl 26.7 27 0.00092 30.7 1.9 32 98-129 183-223 (290)
77 3bbn_M Ribosomal protein S13; 26.7 8.6 0.0003 31.0 -1.2 28 102-129 55-82 (145)
78 1vq8_Y 50S ribosomal protein L 26.3 14 0.00048 31.7 0.0 33 97-129 35-68 (241)
79 2ziu_A MUS81 protein; helix-ha 22.5 47 0.0016 28.6 2.7 25 106-131 234-258 (311)
80 3bzc_A TEX; helix-turn-helix, 21.8 23 0.00077 35.5 0.5 34 106-140 505-538 (785)
81 3c1y_A DNA integrity scanning 21.1 50 0.0017 30.3 2.6 42 85-127 323-365 (377)
82 4glx_A DNA ligase; inhibitor, 20.8 66 0.0023 31.0 3.5 22 107-128 542-563 (586)
83 1ul1_X Flap endonuclease-1; pr 20.4 93 0.0032 27.8 4.2 26 103-128 220-251 (379)
No 1
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=97.96 E-value=7.7e-05 Score=62.92 Aligned_cols=85 Identities=22% Similarity=0.277 Sum_probs=64.7
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHh-hCCCCCCcccHHHHHHh--cC---C--CCCCCHHHHHHHHHHHHHHHHHhhcc
Q 027752 103 DLTKAVSELTVLKGVGPATASAVLAA-YAPDLAPFMSDEAMGAA--LG---H--SKDYSLKQYLLFADKLQAKAKELVSE 174 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~-~~P~~~pFfsDEa~~~~--~g---~--~~kYt~keY~~~~~~l~~~~~~L~~~ 174 (219)
+...+++.|++||||||-||++||.. ..++ ++..++-+...+ .| . +..-+.++|.++-..++..++.+
T Consensus 111 ~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~-~~~vD~~v~Ri~~rlg~~~~~~~k~~~~k~y~~~~~~l~~~~~~~--- 186 (207)
T 3fhg_A 111 DQQLARERLLNIKGIGMQEASHFLRNVGYFD-LAIIDRHIIDFMRRIGAIGETNVKQLSKSLYISFENILKSIASNL--- 186 (207)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHTTCCS-SCCCCHHHHHHHHHTTSSCCCCCSCCCHHHHHHHHHHHHHHHHHT---
T ss_pred CHHHHHHHHHcCCCcCHHHHHHHHHHhCCCC-cceecHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHHHHHh---
Confidence 34578999999999999999999995 5543 233444444432 23 1 34678999999999999998887
Q ss_pred CCCCCHHHHHHHHHHHHhh
Q 027752 175 ENCFTPFDVERALWSSAIG 193 (219)
Q Consensus 175 ~~~~t~~~VEkalw~~~v~ 193 (219)
.+++..++.++|...-+
T Consensus 187 --~~~~~~lDl~lw~~~~g 203 (207)
T 3fhg_A 187 --NMSVGILDLFIWYKETN 203 (207)
T ss_dssp --TSCHHHHHHHHHHHHHS
T ss_pred --CCCHHHHHHHHHHHHhC
Confidence 48899999999987543
No 2
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=97.87 E-value=0.00021 Score=61.11 Aligned_cols=89 Identities=20% Similarity=0.255 Sum_probs=66.2
Q ss_pred HhhCccHHHHHHHhh-ccCCCChHHHHHHHHhhCCCCCCcc-cHH-HHHHh--cC----CCCCCCHHHHHHHHHHHHHHH
Q 027752 98 FKSLPDLTKAVSELT-VLKGVGPATASAVLAAYAPDLAPFM-SDE-AMGAA--LG----HSKDYSLKQYLLFADKLQAKA 168 (219)
Q Consensus 98 f~~l~d~~~al~~L~-~LkGVGPATASaiLa~~~P~~~pFf-sDE-a~~~~--~g----~~~kYt~keY~~~~~~l~~~~ 168 (219)
|..+.++..+++.|. +||||||-||++||.... ..+|+ -|- +...+ .| .+...|.+.|.++-..++..+
T Consensus 113 ~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g--~~~~~vVDthv~Ri~~RlG~~~~~~k~lt~~~y~e~~~~l~~~g 190 (214)
T 3fhf_A 113 VESFENEKVAREFLVRNIKGIGYKEASHFLRNVG--YDDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIG 190 (214)
T ss_dssp HHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTT--CCSCCCCCHHHHHHHHHTTSSSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcC--CCCcccCcHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 333346788999999 999999999999998642 22444 454 33322 34 235678899999999999999
Q ss_pred HHhhccCCCCCHHHHHHHHHHHHhh
Q 027752 169 KELVSEENCFTPFDVERALWSSAIG 193 (219)
Q Consensus 169 ~~L~~~~~~~t~~~VEkalw~~~v~ 193 (219)
+.+ .+++..+...+|...-+
T Consensus 191 ~~~-----g~~~g~lDl~lW~~~tg 210 (214)
T 3fhf_A 191 EEV-----NLKLSELDLYIWYLRTG 210 (214)
T ss_dssp HHT-----TCCHHHHHHHHHHHHHS
T ss_pred HHH-----CCCHHHHHHHHHHHHhC
Confidence 888 47899999999987543
No 3
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.70 E-value=0.00034 Score=59.92 Aligned_cols=84 Identities=26% Similarity=0.290 Sum_probs=64.5
Q ss_pred cHHHHHHHhh-ccCCCChHHHHHHHHh-hCCCCCCcccHHHHHHh--cC----CCCCCCHHHHHHHHHHHHHHHHHhhcc
Q 027752 103 DLTKAVSELT-VLKGVGPATASAVLAA-YAPDLAPFMSDEAMGAA--LG----HSKDYSLKQYLLFADKLQAKAKELVSE 174 (219)
Q Consensus 103 d~~~al~~L~-~LkGVGPATASaiLa~-~~P~~~pFfsDEa~~~~--~g----~~~kYt~keY~~~~~~l~~~~~~L~~~ 174 (219)
++..+++.|+ .|+||||-||++||.. ..++.+| .++-+...+ .| .+..-|-+.|.++-+.+++.+.++
T Consensus 123 ~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~-VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a~~~--- 198 (219)
T 3n0u_A 123 DPFQSREFLVRNAKGIGWKEASHFLRNTGVEDLAI-LDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVAEAF--- 198 (219)
T ss_dssp CHHHHHHHHHHHSTTCCHHHHHHHHHTTTCCSCCC-CCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHHHHH---
T ss_pred CcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCeee-ecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHHHHH---
Confidence 5678999999 9999999999999975 3433333 444455432 23 244678899999999999999888
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 027752 175 ENCFTPFDVERALWSSAI 192 (219)
Q Consensus 175 ~~~~t~~~VEkalw~~~v 192 (219)
.+++..+...+|...-
T Consensus 199 --g~~~~~ldl~lW~~~~ 214 (219)
T 3n0u_A 199 --GESPGKFDLYLWYLVK 214 (219)
T ss_dssp --TCCHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHh
Confidence 4889999999998743
No 4
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=96.28 E-value=0.042 Score=50.00 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=40.8
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHh--hCCCCCCcccHHHHH---HhcCC--C----CCCCHHHHHHHHHHH
Q 027752 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPDLAPFMSDEAMG---AALGH--S----KDYSLKQYLLFADKL 164 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfsDEa~~---~~~g~--~----~kYt~keY~~~~~~l 164 (219)
+...+++.|++|+||||-||.+||.. ..|+.+|+ +--+.. ...|- . ...+.+.|.++.+.+
T Consensus 247 ~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpv-DthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~ 318 (360)
T 2xhi_A 247 SYEEAHKALCILPGVGTCVADKICLMALDKPQAVPV-NVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFF 318 (360)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCC-SHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEe-cHHHHHHHHHHhCcccccccccCCChHHHHHHHHHH
Confidence 34589999999999999999999986 46777775 323322 22341 1 123467787765555
No 5
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=96.09 E-value=0.012 Score=50.21 Aligned_cols=55 Identities=22% Similarity=0.147 Sum_probs=35.8
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHh--hCCCCCCcccHH----HHHHhcCCCCCCCHHHHHH
Q 027752 104 LTKAVSELTVLKGVGPATASAVLAA--YAPDLAPFMSDE----AMGAALGHSKDYSLKQYLL 159 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfsDE----a~~~~~g~~~kYt~keY~~ 159 (219)
...+++.|+.|+||||-||.+||.. ..|+.+|+ +|= ++..+.|.+..-+.++..+
T Consensus 134 ~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fpv-dD~~v~r~~~~~~~~~~~~~~~~~~~ 194 (228)
T 3s6i_A 134 NEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMPA-DDLSIRNGYRYLHRLPKIPTKMYVLK 194 (228)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCT-TCHHHHHHHHHHTTCSSCCCHHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEec-ccHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 4568999999999999999999976 46665553 333 3334445333335554443
No 6
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=95.86 E-value=0.0043 Score=50.73 Aligned_cols=73 Identities=18% Similarity=0.140 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHhhcCCCCcchHHHhhhCCHHHHHHHHHHH-H------hhCc----cHHHHHHHhhccCCCChHHHHHH
Q 027752 57 NTTELSKLVRWKLTRGKWRPRLLVFVSSLDDSSVKSASEKA-F------KSLP----DLTKAVSELTVLKGVGPATASAV 125 (219)
Q Consensus 57 tkdEL~~LveWKL~rGkfRP~L~~lV~sN~~~~V~~~t~~A-f------~~l~----d~~~al~~L~~LkGVGPATASai 125 (219)
|.++-+.-+-.+|.. + -|+...+.+.+ +++|++..+-. | .+.. .+....+.|.+|+||||-||.+|
T Consensus 44 T~~~~v~~~~~~l~~-~-~pt~~~la~a~-~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~~~~L~~LpGVG~yTAdav 120 (161)
T 4e9f_A 44 TSGKMAIPVLWKFLE-K-YPSAEVARTAD-WRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSY 120 (161)
T ss_dssp SCHHHHHHHHHHHHH-H-SCSHHHHTTSC-HHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCCSSGGGSTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-H-CCCHHHHhccC-hHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCChhhhhcCCCchHHHHHHH
Confidence 567777777777653 2 37777766555 45555443321 1 1100 13335678899999999999999
Q ss_pred HHhhCCC
Q 027752 126 LAAYAPD 132 (219)
Q Consensus 126 La~~~P~ 132 (219)
+++..-+
T Consensus 121 ~~F~~~e 127 (161)
T 4e9f_A 121 RIFCVNE 127 (161)
T ss_dssp HHHTSSC
T ss_pred HHHHCCC
Confidence 9986543
No 7
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=95.70 E-value=0.0069 Score=53.46 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=31.4
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHh--hCCCCCCcccHHHH
Q 027752 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPDLAPFMSDEAM 142 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfsDEa~ 142 (219)
+...+++.|++||||||-||..||.. ..|+.+|. |-..
T Consensus 205 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv--D~~v 244 (290)
T 3i0w_A 205 NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV--DTWV 244 (290)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC--CHHH
T ss_pred CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee--cHHH
Confidence 46789999999999999999999965 57888886 5443
No 8
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=95.67 E-value=0.019 Score=49.04 Aligned_cols=37 Identities=27% Similarity=0.412 Sum_probs=28.8
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--CCCCCCcccHHHH
Q 027752 105 TKAVSELTVLKGVGPATASAVLAAY--APDLAPFMSDEAM 142 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~~pFfsDEa~ 142 (219)
..+++.|++||||||-||.+||... .|+.+| .+|=.+
T Consensus 134 ~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~p-vdd~~~ 172 (233)
T 2h56_A 134 TTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLS-VGDVGL 172 (233)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCC-TTCHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee-CchHHH
Confidence 4789999999999999999999864 566555 344443
No 9
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=95.52 E-value=0.034 Score=47.65 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=27.2
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHhh--CCCCCCc
Q 027752 104 LTKAVSELTVLKGVGPATASAVLAAY--APDLAPF 136 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~~--~P~~~pF 136 (219)
...+++.|+.||||||-||.+||... .|+.+|+
T Consensus 145 ~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv 179 (232)
T 4b21_A 145 EEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPA 179 (232)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCT
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeC
Confidence 34789999999999999999999874 5666563
No 10
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=94.92 E-value=0.045 Score=47.71 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=33.1
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHhh--CCCCCCcccHHHHHHhcC
Q 027752 103 DLTKAVSELTVLKGVGPATASAVLAAY--APDLAPFMSDEAMGAALG 147 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~~--~P~~~pFfsDEa~~~~~g 147 (219)
+...+++.|++|+||||-||.+||... .|+.+| .+|-.+.-..+
T Consensus 201 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~p-vdd~~~r~~l~ 246 (282)
T 1mpg_A 201 DVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFL-PDDYLIKQRFP 246 (282)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCC-TTCHHHHHHST
T ss_pred CHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCc-cccHHHHHHhc
Confidence 667899999999999999999999864 565544 45555554443
No 11
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=94.90 E-value=0.021 Score=48.59 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=27.3
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHhh--CCCCCC
Q 027752 103 DLTKAVSELTVLKGVGPATASAVLAAY--APDLAP 135 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~~--~P~~~p 135 (219)
+...+++.|+.|+||||=||.+||... .|+.+|
T Consensus 140 ~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fp 174 (225)
T 2yg9_A 140 PDELVIAELVQLPGIGRWTAEMFLLFALARPDVFS 174 (225)
T ss_dssp CHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCC
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeee
Confidence 456789999999999999999999874 566555
No 12
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=94.82 E-value=0.071 Score=47.30 Aligned_cols=35 Identities=26% Similarity=0.234 Sum_probs=25.4
Q ss_pred HHHHhhc-cCCCChHHHHHHHHhhCCCCCCcccHHHH
Q 027752 107 AVSELTV-LKGVGPATASAVLAAYAPDLAPFMSDEAM 142 (219)
Q Consensus 107 al~~L~~-LkGVGPATASaiLa~~~P~~~pFfsDEa~ 142 (219)
.++.|.+ |+||||-||.+||....-.. .|..|--.
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~a~g~p-~~~VDt~V 161 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASIAFGQA-TGVVDGNV 161 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHHHSCCC-CCCCCHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhcCCC-CccccHHH
Confidence 5788887 99999999999999864332 23445433
No 13
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=94.26 E-value=0.032 Score=47.12 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.2
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHhhC
Q 027752 104 LTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~~~ 130 (219)
...+++.|++||||||-||++||....
T Consensus 116 ~~~~~~~L~~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 116 QEVTREWLLDQKGIGKESADAILCYAC 142 (218)
T ss_dssp HHCCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred chHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 445788899999999999999999753
No 14
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=94.06 E-value=0.054 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.9
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhC
Q 027752 106 KAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~ 130 (219)
.+++.|++||||||-||.+||....
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~~ 136 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLAF 136 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhc
Confidence 4578899999999999999999753
No 15
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=94.01 E-value=0.12 Score=43.15 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.5
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh
Q 027752 106 KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~ 129 (219)
.+++.|++|+||||-||.+||...
T Consensus 106 ~~~~~L~~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 106 EDRAALEALPGVGRKTANVVLNTA 129 (211)
T ss_dssp SCHHHHHHSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCChHHHHHHHHHH
Confidence 467889999999999999999974
No 16
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=93.68 E-value=0.051 Score=47.79 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=28.3
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh-CCCCCCcccHHHH
Q 027752 105 TKAVSELTVLKGVGPATASAVLAAY-APDLAPFMSDEAM 142 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~-~P~~~pFfsDEa~ 142 (219)
..+++.|++|+||||-||.+||... .|+.+| .+|=.+
T Consensus 206 ~e~~~~L~~lpGIG~~TA~~ill~~lg~d~fp-vdD~~~ 243 (295)
T 2jhn_A 206 EEAYEYLTSFKGIGRWTAELVLSIALGKNVFP-ADDLGV 243 (295)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCCCCC-TTCHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHccCCCccc-chHHHH
Confidence 6789999999999999999999852 366555 334433
No 17
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=93.22 E-value=0.08 Score=44.92 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=26.9
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh--CCCCCCcccHHHHH
Q 027752 106 KAVSELTVLKGVGPATASAVLAAY--APDLAPFMSDEAMG 143 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~--~P~~~pFfsDEa~~ 143 (219)
.+++.|++|+||||-||.+||... .| .+| .++-+..
T Consensus 110 ~~~~~L~~lpGIG~~TA~~il~~a~g~~-~~~-vD~~v~R 147 (226)
T 1orn_A 110 RDRDELMKLPGVGRKTANVVVSVAFGVP-AIA-VDTHVER 147 (226)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHHHCCC-CCC-CCHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCc-eee-eCHHHHH
Confidence 468899999999999999999874 44 333 4554544
No 18
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=93.02 E-value=0.088 Score=44.43 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.5
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh
Q 027752 106 KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~ 129 (219)
.+++.|++|+||||-||.+||...
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a 129 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLS 129 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHh
Confidence 367899999999999999999875
No 19
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=92.40 E-value=0.11 Score=46.75 Aligned_cols=38 Identities=34% Similarity=0.409 Sum_probs=27.4
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhCCCCCCcccHHHHH
Q 027752 106 KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMG 143 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~ 143 (219)
.+++.|++|+||||-||.+||+...-..++..+.-+..
T Consensus 115 ~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~R 152 (369)
T 3fsp_A 115 DDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMR 152 (369)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_pred hHHHHHhcCCCcCHHHHHHHHHHHCCCCcccccHHHHH
Confidence 46888999999999999999998643333434443433
No 20
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=91.72 E-value=0.045 Score=41.37 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhCCCCCCcccHHHHHHhcC
Q 027752 106 KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMGAALG 147 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g 147 (219)
+..+.|+.|+||||++|..|+. +-||-|-|-+.-+.|
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~-----~GpF~s~edL~~V~G 59 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPG 59 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHH-----HCCCSSGGGGGGCTT
T ss_pred CCHHHHhHCCCCCHHHHHHHHH-----cCCCCCHHHHHhccC
Confidence 4567899999999999999999 358888777766655
No 21
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=91.51 E-value=0.048 Score=43.74 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=30.5
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhCCCCCCcccHHHHHHhcCC
Q 027752 106 KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMGAALGH 148 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g~ 148 (219)
+..+.|+.|+||||++|.+|. ++.||-|=|=..-+.|-
T Consensus 60 A~~~eL~~LpGiGp~~A~~II-----~~GpF~svedL~~V~GI 97 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIV-----KNAPYESVEDVLNIPGL 97 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHH-----HTCCCSSGGGGGGCTTC
T ss_pred cCHHHHHHCCCCCHHHHHHHH-----HcCCCCCHHHHHhCCCC
Confidence 457789999999999999999 35688887666667663
No 22
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=88.67 E-value=0.24 Score=34.60 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=26.5
Q ss_pred HHHHhhccCCCChHHHHHHHHhhCCCCCCcccHHHHHHhcC
Q 027752 107 AVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMGAALG 147 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g 147 (219)
....|..++||||.+|..|+... +|-+-+-+..+.|
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r-----~~~s~~eL~~v~G 60 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGR-----PYARVEDLLKVKG 60 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTC-----CCSSGGGGGGSTT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHc-----ccCCHHHHHhCCC
Confidence 45678899999999999999964 5555554444544
No 23
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=87.72 E-value=0.96 Score=32.63 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=27.9
Q ss_pred hhCCHHHHHHHHHHHHhhCccHHHHHHHhhccCCCChHHHHHHHHhh
Q 027752 83 SSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 83 ~sN~~~~V~~~t~~Af~~l~d~~~al~~L~~LkGVGPATASaiLa~~ 129 (219)
++++++.+..-...-+ ....+..|+.++||||.+|-.||..+
T Consensus 11 ~~~~~~~~~~~~~~~~-----~~~~~~~L~~IpgIG~~~A~~Ll~~f 52 (91)
T 2a1j_B 11 SQDPADLLMEKLEQDF-----VSRVTECLTTVKSVNKTDSQTLLTTF 52 (91)
T ss_dssp --CCSHHHHHHHHHHH-----HHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccCCH-----HHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 4566666665544433 33456678889999999999888864
No 24
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=87.66 E-value=0.13 Score=43.90 Aligned_cols=63 Identities=22% Similarity=0.328 Sum_probs=41.4
Q ss_pred hHHHhhhCCHHHHHHHHHHHHhhCccHHHHHHHhhccCCCChHHHHHHHHhhCCCCCCcccHHHHHH-hcC
Q 027752 78 LLVFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMGA-ALG 147 (219)
Q Consensus 78 L~~lV~sN~~~~V~~~t~~Af~~l~d~~~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~-~~g 147 (219)
+.+.|..|....|. . |+....+.+.+..|..|+||||++|-+|+.--.- -||-|=|-+.- +.|
T Consensus 106 v~~iV~~~E~~fv~-f----~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~--G~F~s~eDL~~RV~G 169 (205)
T 2i5h_A 106 IEHIIKQDEKKYVD-F----FNKADSITTRMHQLELLPGVGKKMMWAIIEERKK--RPFESFEDIAQRVKG 169 (205)
T ss_dssp HHHHHHTTHHHHHH-H----HC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHH--SCCCSHHHHHHHSTT
T ss_pred HHHHHHhchhhhhh-h----ccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhc--CCCCCHHHHHHhcCC
Confidence 34555555444443 2 3333334667778999999999999999997543 59999665543 655
No 25
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=86.69 E-value=0.46 Score=32.40 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=19.3
Q ss_pred HHHhhccCCCChHHHHHHHHhhC
Q 027752 108 VSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~ 130 (219)
.+.|+.++||||.+|..|.+...
T Consensus 45 ~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 45 VAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHh
Confidence 56788999999999999988764
No 26
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=83.49 E-value=0.49 Score=40.22 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=21.4
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHhhCCC
Q 027752 104 LTKAVSELTVLKGVGPATASAVLAAYAPD 132 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~~~P~ 132 (219)
.+.-+..|..++||||.||-+||+.+.|+
T Consensus 83 Er~lf~~L~sv~GIGpk~A~~Ils~~~~~ 111 (212)
T 2ztd_A 83 TRDLFLTLLSVSGVGPRLAMAALAVHDAP 111 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHSCHH
T ss_pred HHHHHHHhcCcCCcCHHHHHHHHHhCCHH
Confidence 44455667778888888888888876664
No 27
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=81.30 E-value=0.45 Score=35.00 Aligned_cols=49 Identities=24% Similarity=0.350 Sum_probs=32.0
Q ss_pred HHHHhhccCCCChHHHHHHHHhhCCCCCCcccHHHHHHhcCCCCCCCHHHHHHH
Q 027752 107 AVSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMGAALGHSKDYSLKQYLLF 160 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g~~~kYt~keY~~~ 160 (219)
....|..++||||.+|..|+...... -+|-+-+-+..+.| .+.+-+..+
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r~~~-g~f~s~edL~~v~G----ig~k~~~~l 86 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWRELH-GPFSQVEDLERVEG----ITGKQMESF 86 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHHHHH-CCCSSGGGGGGSTT----CCHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHhc-CCcCCHHHHHhCCC----CCHHHHHHH
Confidence 35578899999999999999986432 26655444444444 344444444
No 28
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=81.21 E-value=1.3 Score=30.98 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=15.0
Q ss_pred HHHhhccCCCChHHHHHHHHhh
Q 027752 108 VSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (219)
.+.|++++||||.+|..|.+..
T Consensus 55 ~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 55 VEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp HHHHTTSSSTTSHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHH
Confidence 4566777777777777776653
No 29
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=80.48 E-value=0.93 Score=37.75 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=21.9
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhhCC
Q 027752 105 TKAVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P 131 (219)
+.-+..|..++||||.||-+||+.+.|
T Consensus 68 k~~f~~L~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 68 LALFELLLSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhCCh
Confidence 445567888999999999999998665
No 30
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=78.45 E-value=0.74 Score=31.54 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=19.1
Q ss_pred HHHHhhccCCCChHHHHHHHHh
Q 027752 107 AVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~ 128 (219)
+...|..++||||.++-.+|.-
T Consensus 2 ~~s~L~~IpGIG~kr~~~LL~~ 23 (63)
T 2a1j_A 2 PQDFLLKMPGVNAKNCRSLMHH 23 (63)
T ss_dssp CCHHHHTSTTCCHHHHHHHHHH
T ss_pred HHhHHHcCCCCCHHHHHHHHHH
Confidence 3467889999999999999985
No 31
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=77.40 E-value=1.9 Score=30.80 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.2
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh
Q 027752 106 KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~ 129 (219)
..+..|+.++||||.+|-.|+..+
T Consensus 16 ~~~~~L~~IpgIG~~~A~~Ll~~f 39 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTTF 39 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHC
Confidence 456678899999999999999864
No 32
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=77.25 E-value=2.1 Score=28.91 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.3
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh
Q 027752 106 KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~ 129 (219)
.....|+.++||||.+|..|+..+
T Consensus 11 ~~~~~L~~i~giG~~~a~~Ll~~f 34 (75)
T 1x2i_A 11 RQRLIVEGLPHVSATLARRLLKHF 34 (75)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHc
Confidence 345678999999999999999864
No 33
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=76.71 E-value=1.3 Score=37.16 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=21.6
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhhCC
Q 027752 105 TKAVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P 131 (219)
+.-+..|..++||||.+|-+||+.+.|
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHhhCCh
Confidence 445567888999999999999997665
No 34
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=76.32 E-value=1.8 Score=30.96 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.4
Q ss_pred HHHhhccCCCChHHHHHHHHhhC
Q 027752 108 VSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~ 130 (219)
.+.|+.++|||+.+|..|.+...
T Consensus 50 ~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 50 REDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999864
No 35
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=75.21 E-value=1.8 Score=31.14 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=20.3
Q ss_pred HHHhhccCCCChHHHHHHHHhhC
Q 027752 108 VSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~ 130 (219)
.+.|++++|||+.+|..|+....
T Consensus 63 ~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 63 REDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 56799999999999999998863
No 36
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=74.80 E-value=2.3 Score=34.32 Aligned_cols=50 Identities=24% Similarity=0.303 Sum_probs=34.6
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--CCCC-CCcccHHHHHHh---cCCCCCCCH
Q 027752 105 TKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMGAA---LGHSKDYSL 154 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfsDEa~~~~---~g~~~kYt~ 154 (219)
+...-+||.++|||+.||-.||... +|+. +=-.+||-...+ ...+.+|.+
T Consensus 26 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~i 81 (146)
T 3u5c_S 26 IKIVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKI 81 (146)
T ss_dssp SCTTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTC
T ss_pred cchHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCc
Confidence 3344578999999999999999985 5543 556777755533 344555654
No 37
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=72.61 E-value=1.6 Score=30.42 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.2
Q ss_pred HHhhccCCCChHHHHHHHHhh
Q 027752 109 SELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 109 ~~L~~LkGVGPATASaiLa~~ 129 (219)
..|..++||||.||-.|+..+
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f 44 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM 44 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc
Confidence 357789999999999999875
No 38
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=71.74 E-value=4.7 Score=31.10 Aligned_cols=39 Identities=36% Similarity=0.463 Sum_probs=29.3
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--CCCC-CCcccHHHHH
Q 027752 105 TKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMG 143 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfsDEa~~ 143 (219)
+...-+|+.++|||+.||..||... +|+. +--.+||-+.
T Consensus 12 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~ 53 (114)
T 3r8n_M 12 KHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQID 53 (114)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHH
T ss_pred CEeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHH
Confidence 3445678999999999999999985 5543 5566776554
No 39
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=69.08 E-value=3.4 Score=30.05 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.5
Q ss_pred HHHHHhhccCCCChHHHHHHHHh
Q 027752 106 KAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~ 128 (219)
.+...|..++||||.+.-.||.-
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHH
T ss_pred cHHHHHHhCCCCCHHHHHHHHHH
Confidence 46788999999999999999985
No 40
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=68.73 E-value=2.6 Score=36.04 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.0
Q ss_pred HHHHHHHhhccCCCChHHHHHH
Q 027752 104 LTKAVSELTVLKGVGPATASAV 125 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASai 125 (219)
+...++.|.+||||||-||-=+
T Consensus 21 l~~LI~~l~~LPGIG~KsA~Rl 42 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPKTAQRL 42 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
Confidence 6778999999999999998754
No 41
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=66.04 E-value=2.1 Score=38.35 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=20.6
Q ss_pred hhCccHHHHHHHhhccCCCChHHHHHHHHhhC
Q 027752 99 KSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 99 ~~l~d~~~al~~L~~LkGVGPATASaiLa~~~ 130 (219)
..++..-..+..|+.|+|||+.||..|--...
T Consensus 47 ~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~ 78 (335)
T 2bcq_A 47 KSFHKPVTSYQEACSIPGIGKRMAEKIIEILE 78 (335)
T ss_dssp HSCCSCCCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HhCCccccCHHHHhcCCCccHHHHHHHHHHHH
Confidence 34443222344588888888888888877643
No 42
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=64.98 E-value=2.3 Score=38.00 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=23.7
Q ss_pred HhhCccHHHHHHHhhccCCCChHHHHHHHHhhC
Q 027752 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 98 f~~l~d~~~al~~L~~LkGVGPATASaiLa~~~ 130 (219)
+..++..-..+..|..|+|||+.||..|--...
T Consensus 46 l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 46 IAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344543233444589999999999999988754
No 43
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=64.78 E-value=2.7 Score=31.28 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=19.1
Q ss_pred HHHHhhccCCCChHHHHHHHHhh
Q 027752 107 AVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~ 129 (219)
+|..|+.||+|||+++-.+-.++
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~G 24 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKAG 24 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHTT
T ss_pred CHHHHhhCCCCCHHHHHHHHHcC
Confidence 35568999999999999988885
No 44
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.87 E-value=7.4 Score=31.34 Aligned_cols=39 Identities=28% Similarity=0.392 Sum_probs=29.3
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--CCCC-CCcccHHHHH
Q 027752 105 TKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMG 143 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfsDEa~~ 143 (219)
+...-+||.++|||+.||-.||... +|+. +=-.+||-..
T Consensus 19 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~ 60 (148)
T 3j20_O 19 KQLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVK 60 (148)
T ss_dssp SCHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHH
T ss_pred CEehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHH
Confidence 3445678999999999999999985 5543 5667776554
No 45
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=62.87 E-value=8.2 Score=31.32 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=29.8
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--CCCC-CCcccHHHHHH
Q 027752 105 TKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMGA 144 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfsDEa~~~ 144 (219)
+...-+|+.++|||+.||-.||... +|+. +--.+||-...
T Consensus 26 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~ 68 (155)
T 2xzm_M 26 RITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNK 68 (155)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHH
T ss_pred CEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHH
Confidence 4455678999999999999999985 4543 55667765543
No 46
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=61.43 E-value=4.4 Score=36.17 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=20.9
Q ss_pred HHHHHHhhccCCCChHHHHHHHHh
Q 027752 105 TKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (219)
..++..|++++||||.||..+-.-
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~ 117 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDE 117 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHc
Confidence 568999999999999999988543
No 47
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=61.18 E-value=3.3 Score=33.57 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=34.8
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHhh--CCCC-CCcccHHHHHHh---cCCCCCCCH
Q 027752 103 DLTKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMGAA---LGHSKDYSL 154 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfsDEa~~~~---~g~~~kYt~ 154 (219)
+-+...-+||.++|||+.||-.||... +|+. +=-.+||-...+ ...+.+|.+
T Consensus 22 ~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~i 79 (152)
T 3iz6_M 22 GKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKV 79 (152)
T ss_dssp CSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCC
T ss_pred CCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCc
Confidence 334456678999999999999999985 5543 555677655433 333445544
No 48
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=60.76 E-value=4.5 Score=34.93 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=18.7
Q ss_pred HHHHHHHhhccCCCChHHHHHH
Q 027752 104 LTKAVSELTVLKGVGPATASAV 125 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASai 125 (219)
+..-++.|.+|+||||-||.=+
T Consensus 7 l~~LI~~l~~LPGIG~KSA~Rl 28 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRL 28 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHhHCCCCCHHHHHHH
Confidence 4667899999999999999754
No 49
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=60.64 E-value=16 Score=32.92 Aligned_cols=71 Identities=18% Similarity=0.106 Sum_probs=45.0
Q ss_pred ccCCCChHHHHHHHHhh----------CCCCCCcccHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHHHhhccCC
Q 027752 113 VLKGVGPATASAVLAAY----------APDLAPFMSDEAMGAALGH------SKDYSLKQYLLFADKLQAKAKELVSEEN 176 (219)
Q Consensus 113 ~LkGVGPATASaiLa~~----------~P~~~pFfsDEa~~~~~g~------~~kYt~keY~~~~~~l~~~~~~L~~~~~ 176 (219)
.++||||-||.-+|.-+ +...+||=.+++......+ .+++...+...+.+-+. +..
T Consensus 255 GVpGIG~KtA~kLl~~~gsle~il~~~~~~~~~~~~~~~~~~f~~p~v~~~~~~~w~~pd~~~l~~fl~--------~~~ 326 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYGGIEKIPKPILKSPIEVDVIAIKKYFLQPQVTDNYRIEWHTPDPDAVKRILV--------DEH 326 (363)
T ss_dssp CSTTCCHHHHHHHHHHHTSSTTSCGGGCCCSSCCCHHHHHHHHHSCCCCSCCCCCCCCCCHHHHHHHHT--------TTT
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHhcccccCCCCHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHH--------hcc
Confidence 46799999999999863 2224565556777766542 24555566655444332 223
Q ss_pred CCCHHHHHHHHHHHH
Q 027752 177 CFTPFDVERALWSSA 191 (219)
Q Consensus 177 ~~t~~~VEkalw~~~ 191 (219)
+|+..+|+.++=-+.
T Consensus 327 ~f~~~rv~~~~~~l~ 341 (363)
T 3ory_A 327 DFSIDRVSTALERYV 341 (363)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 699999988875543
No 50
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=60.36 E-value=5 Score=38.22 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred HHHHHHhhccCCCChHHHHHHHHh
Q 027752 105 TKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (219)
...+..|++++||||.||-.|++.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc
Confidence 457889999999999999999985
No 51
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=58.42 E-value=7.5 Score=30.49 Aligned_cols=41 Identities=20% Similarity=0.258 Sum_probs=29.5
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--CCCC-CCcccHHHHHHh
Q 027752 105 TKAVSELTVLKGVGPATASAVLAAY--APDL-APFMSDEAMGAA 145 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~-~pFfsDEa~~~~ 145 (219)
+...-+|+.+.|||+.+|..||... +|+. +--.+||-...+
T Consensus 13 k~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l 56 (126)
T 2vqe_M 13 KRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRL 56 (126)
T ss_dssp SBHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHH
T ss_pred cEeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHH
Confidence 3345578999999999999999984 5543 455666655433
No 52
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=58.20 E-value=16 Score=26.97 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=30.1
Q ss_pred HHHhhccCCCChHHHHHHHHhhCCCCCCc---ccHHHHHHhcCCCCCCCHHHHHHH
Q 027752 108 VSELTVLKGVGPATASAVLAAYAPDLAPF---MSDEAMGAALGHSKDYSLKQYLLF 160 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~~~pF---fsDEa~~~~~g~~~kYt~keY~~~ 160 (219)
|..|+.||+|||+++-.+-.++-.+.--+ =++++|.-++-....=++.-|-.+
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c~~~L~aL 58 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMSELYAL 58 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCCHHHHHHH
Confidence 34588999999999999888753221111 125566555533333344333333
No 53
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=58.16 E-value=2.1 Score=36.92 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=0.0
Q ss_pred HHHHHhhccCCCChHHHHHHHHh
Q 027752 106 KAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~ 128 (219)
+....|..|+||||.+|-.||..
T Consensus 12 a~~~~L~~IpGIGpk~a~~Ll~~ 34 (241)
T 1vq8_Y 12 EEYTELTDISGVGPSKAESLREA 34 (241)
T ss_dssp -----------------------
T ss_pred cchhHHhcCCCCCHHHHHHHHHc
Confidence 34557888999999999999986
No 54
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=58.16 E-value=6 Score=35.69 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=21.8
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHh
Q 027752 103 DLTKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~ 128 (219)
..-.+|..|++++||||.||..+-.-
T Consensus 96 ~~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 96 ERYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred cchHHHHHHhCCCCCCHHHHHHHHHc
Confidence 35568999999999999999988543
No 55
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=55.96 E-value=6.4 Score=37.33 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.5
Q ss_pred HHHHHHhhccCCCChHHHHHHHHh
Q 027752 105 TKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (219)
...+..|+++.||||.||-.|++.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHh
Confidence 457889999999999999999986
No 56
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=54.17 E-value=25 Score=29.57 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=21.2
Q ss_pred HHHhhccCCCChHHHHHHHHhhCCCC
Q 027752 108 VSELTVLKGVGPATASAVLAAYAPDL 133 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~~ 133 (219)
.+.|++++|||+-||--|..-+....
T Consensus 122 ~~~L~~vpGIG~KtA~rIi~elk~kl 147 (212)
T 2ztd_A 122 VAALTRVPGIGKRGAERMVLELRDKV 147 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTTTC
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhh
Confidence 46899999999999998887665433
No 57
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=53.72 E-value=7.8 Score=35.28 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=21.5
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHh
Q 027752 104 LTKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~ 128 (219)
.-.+|..|++++||||.||..+-.-
T Consensus 116 ~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 116 RYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred chhHHHHHHccCCCCHHHHHHHHHc
Confidence 4568999999999999999988553
No 58
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=52.68 E-value=7 Score=34.88 Aligned_cols=22 Identities=18% Similarity=0.219 Sum_probs=19.1
Q ss_pred HHHHhhccCCCChHHHHHHHHh
Q 027752 107 AVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~ 128 (219)
.++.|++++||||.||..+-.-
T Consensus 94 ~l~ll~~v~GiG~k~a~~l~~~ 115 (335)
T 2bcq_A 94 VLELFSNIWGAGTKTAQMWYQQ 115 (335)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHT
T ss_pred HHHHHhcCCCcCHHHHHHHHHc
Confidence 6788999999999999988543
No 59
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=52.52 E-value=3.4 Score=37.29 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=22.9
Q ss_pred hhCccHHHHHHHhhccCCCChHHHHHHHHhhC
Q 027752 99 KSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 99 ~~l~d~~~al~~L~~LkGVGPATASaiLa~~~ 130 (219)
..++..-..+..|+.|+|||+.||..|--...
T Consensus 51 ~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 51 KSLPCPVASLSQLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp HHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 44443222344599999999999999988754
No 60
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=52.12 E-value=1.3 Score=31.21 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhCccH-HHHHHHhhccCCCChHHHHHHHHhhCCCCCCcccHH
Q 027752 88 SSVKSASEKAFKSLPDL-TKAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDE 140 (219)
Q Consensus 88 ~~V~~~t~~Af~~l~d~-~~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDE 140 (219)
..+......+|..+.|+ ..+.+.|+.++||+.++|..|.....- .|+|.++
T Consensus 18 ~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~--~~w~~~~ 69 (70)
T 1wcn_A 18 DLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN--ICWFGDE 69 (70)
T ss_dssp HHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH--HHTTCTT
T ss_pred HHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH--ccCcccc
Confidence 33344444444433333 235778888888888888887776532 3566544
No 61
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=49.25 E-value=6.5 Score=29.29 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.4
Q ss_pred HhhccCCCChHHHHHHHHhh
Q 027752 110 ELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 110 ~L~~LkGVGPATASaiLa~~ 129 (219)
.+++|+||||+++--+-.-.
T Consensus 19 ~V~evpGIG~~~~~~L~~~G 38 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEERG 38 (89)
T ss_dssp CGGGSTTCCHHHHHHHHHTT
T ss_pred CcccCCCcCHHHHHHHHHcC
Confidence 46899999999998877643
No 62
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=47.28 E-value=11 Score=30.84 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=19.5
Q ss_pred HHHhhccCCCChHHHHHHHHhhC
Q 027752 108 VSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~ 130 (219)
...|..++||||.+|-.|+..+.
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~fg 183 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERFG 183 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHcC
Confidence 44688999999999999999743
No 63
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=44.78 E-value=5.4 Score=36.32 Aligned_cols=33 Identities=18% Similarity=0.207 Sum_probs=23.2
Q ss_pred HhhCccHHHHHHHhhccCCCChHHHHHHHHhhC
Q 027752 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 98 f~~l~d~~~al~~L~~LkGVGPATASaiLa~~~ 130 (219)
+..++..-..+..|.+|+|||+.||..|--...
T Consensus 69 l~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 69 LKSLPFPITSMKDTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp HHTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 344443223344599999999999999987754
No 64
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=44.08 E-value=18 Score=37.23 Aligned_cols=35 Identities=20% Similarity=0.336 Sum_probs=25.9
Q ss_pred HHHhhccCCCChHHHHHHHHhhCCCCCCcccHHHH
Q 027752 108 VSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAM 142 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~ 142 (219)
-..|.-+.||||..|.+|+....-.+.+|-|-+-.
T Consensus 716 ~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L 750 (1030)
T 3psf_A 716 ASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQL 750 (1030)
T ss_dssp HTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 67888999999999999998753334466554433
No 65
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=44.02 E-value=7.1 Score=28.49 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=19.7
Q ss_pred hhCccHHHHHHHhhccCCCChHHHHHHHH
Q 027752 99 KSLPDLTKAVSELTVLKGVGPATASAVLA 127 (219)
Q Consensus 99 ~~l~d~~~al~~L~~LkGVGPATASaiLa 127 (219)
+..|..-...+.+..|+||||-++.-|=.
T Consensus 48 k~~P~~i~s~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 48 QRYPLPLRSGKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp HHCCSCCCSHHHHHTCTTTCHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHhhcccHHHHHHHHH
Confidence 34454334455667899999999987643
No 66
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=43.07 E-value=13 Score=31.73 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=18.7
Q ss_pred HHHhhccCCCChHHHHHHHHhh
Q 027752 108 VSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (219)
-..|..++||||.||-.+|.-+
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~F 188 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHF 188 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHc
Confidence 3567899999999999999863
No 67
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=39.06 E-value=15 Score=35.11 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHhhccCCCChHHHHHHHHh
Q 027752 108 VSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~ 128 (219)
...|+.++||||+||.-+|--
T Consensus 467 eamLtAIaGIGp~tAeRLLEk 487 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKK 487 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 68
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=38.32 E-value=20 Score=37.55 Aligned_cols=36 Identities=19% Similarity=0.285 Sum_probs=26.1
Q ss_pred HHHhhccCCCChHHHHHHHHhhCCCCCCcccHHHHH
Q 027752 108 VSELTVLKGVGPATASAVLAAYAPDLAPFMSDEAMG 143 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~ 143 (219)
-..|.-+.||||..|.+|+....-.+.+|-|-+-..
T Consensus 713 ~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L~ 748 (1219)
T 3psi_A 713 ASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQLI 748 (1219)
T ss_dssp HTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHHh
Confidence 678889999999999999987522234665544333
No 69
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=37.68 E-value=18 Score=29.86 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=20.7
Q ss_pred HHHHhhccCCCChHHHHHHHHhhCC
Q 027752 107 AVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P 131 (219)
-.+.|++++|||+.||--|..-+-.
T Consensus 105 d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 105 DARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999998776543
No 70
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=35.63 E-value=20 Score=29.85 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=27.7
Q ss_pred HHHhhhCCHHHHHHHHHHHHhhCccHHHHHHHhhccCCCChHHHHHHHHhh
Q 027752 79 LVFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 79 ~~lV~sN~~~~V~~~t~~Af~~l~d~~~al~~L~~LkGVGPATASaiLa~~ 129 (219)
+.+++.-.++.+.++... +-.+.|++++|||+-||--|..-.
T Consensus 87 ~~iL~~f~~~~l~~aI~~---------~d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 87 LAILSGMSAQQFVNAVER---------EEVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp HHHHHHSCHHHHHHHHHT---------TCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHhhCChHHHHHHHHh---------CCHHHHhhCCCCCHHHHHHHHHHH
Confidence 455555555544333322 245789999999999999887643
No 71
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=33.23 E-value=33 Score=27.26 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCcchHHHhhhCCHH--HHHHHHHHHH-hhCccHHHHHHHhh-ccCCCChH
Q 027752 54 PHINTTELSKLVRWKLTRGKWRPRLLVFVSSLDDS--SVKSASEKAF-KSLPDLTKAVSELT-VLKGVGPA 120 (219)
Q Consensus 54 ~~ltkdEL~~LveWKL~rGkfRP~L~~lV~sN~~~--~V~~~t~~Af-~~l~d~~~al~~L~-~LkGVGPA 120 (219)
.|+|.+||..|+.+=-+ |.-.+++..+|.= ....+++.-- ...|.+.+.+..+. +|.++|||
T Consensus 78 ~~fT~~El~~l~~FY~s-----p~Gkk~~~~~p~~~~~~~~~~q~~~~~~~p~~~~~~~em~kel~~~~~~ 143 (147)
T 3oao_A 78 TNFTESELKDLNAFYQS-----PLGKKVLEKMPRLTAESAQLTQAKLQGAVEPVNKLMADMDKELGVAAPA 143 (147)
T ss_dssp HHSCHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHCCHHHHHHHHHHHCC-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 59999999999998655 6566887777541 1222222222 23456666667666 69999886
No 72
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=31.63 E-value=9.9 Score=32.48 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHhhccCCCChHHHHHHHHhh
Q 027752 108 VSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (219)
-..|..++||||.||-.||.-+
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~F 193 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYF 193 (226)
T ss_dssp ----------------------
T ss_pred cccccccCCCCHHHHHHHHHHh
Confidence 3567899999999999999864
No 73
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=30.96 E-value=26 Score=26.66 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhCccH-HHHHHHhhccCCCChHHHHHHHHhh
Q 027752 87 DSSVKSASEKAFKSLPDL-TKAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 87 ~~~V~~~t~~Af~~l~d~-~~al~~L~~LkGVGPATASaiLa~~ 129 (219)
+..+++.-..+|..+.++ .+.-+.|++++|||+++|--|+.+.
T Consensus 35 ~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 35 ANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp HHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHH
Confidence 556666666666555443 2346789999999999999999985
No 74
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=28.88 E-value=31 Score=28.16 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=19.6
Q ss_pred HHHHhhccCCCChHHHHHHHHhh
Q 027752 107 AVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~ 129 (219)
..+.|.+++|||+.+|..|....
T Consensus 192 ~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 192 SKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 35678999999999999998765
No 75
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=28.29 E-value=24 Score=33.51 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhhCccHHHHH--HHhhccCCCChHHHHHHHHh
Q 027752 88 SSVKSASEKAFKSLPDLTKAV--SELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 88 ~~V~~~t~~Af~~l~d~~~al--~~L~~LkGVGPATASaiLa~ 128 (219)
..+..+-..+|..+.|+..|+ ..|++++|||+-||.-|+..
T Consensus 108 k~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~ 150 (578)
T 2w9m_A 108 KKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILEN 150 (578)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHH
Confidence 334444444444445666664 37889999999999999655
No 76
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=26.70 E-value=27 Score=30.67 Aligned_cols=32 Identities=6% Similarity=0.225 Sum_probs=21.6
Q ss_pred HhhCc-cHHHHHHHhhc--------cCCCChHHHHHHHHhh
Q 027752 98 FKSLP-DLTKAVSELTV--------LKGVGPATASAVLAAY 129 (219)
Q Consensus 98 f~~l~-d~~~al~~L~~--------LkGVGPATASaiLa~~ 129 (219)
|..-| +--.-+.+|+. ++||||-||.-+|.-+
T Consensus 183 ~Gv~p~~q~iD~~~L~GD~sDniPGVpGIG~KTA~kLL~~~ 223 (290)
T 1exn_A 183 HNVDDVEQFISLKAIMGDLGDNIRGVEGIGAKRGYNIIREF 223 (290)
T ss_dssp HSSSSHHHHHHHHHHHCBGGGTBCCCTTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhcCCCcCCCCCCCcCCHhHHHHHHHHc
Confidence 33334 33334556665 8889999999999864
No 77
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=26.69 E-value=8.6 Score=30.97 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=22.2
Q ss_pred ccHHHHHHHhhccCCCChHHHHHHHHhh
Q 027752 102 PDLTKAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 102 ~d~~~al~~L~~LkGVGPATASaiLa~~ 129 (219)
|+-+...-.|+.++|||+.+|..||...
T Consensus 55 p~~K~v~~aLt~IyGIG~~~A~~I~~~~ 82 (145)
T 3bbn_M 55 PNHKRVEYSLQYIHGIGRSRSRQILLDL 82 (145)
T ss_dssp CCSSBTTTGGGGSTTCCSSTTTGGGTTT
T ss_pred CCCCEEEEeeeeecCccHHHHHHHHHHc
Confidence 3334455678999999999999999864
No 78
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=26.27 E-value=14 Score=31.69 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHhhCccHH-HHHHHhhccCCCChHHHHHHHHhh
Q 027752 97 AFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 97 Af~~l~d~~-~al~~L~~LkGVGPATASaiLa~~ 129 (219)
.|..+.++. +....|+.++|||+.||.-|+...
T Consensus 35 gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 35 GFESVEDVRGADQSALADVSGIGNALAARIKADV 68 (241)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHH
Confidence 344444443 346788999999999999998764
No 79
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=22.53 E-value=47 Score=28.58 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhCC
Q 027752 106 KAVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P 131 (219)
..+..|..++||+|..|.+|+.. .|
T Consensus 234 ~~~~mL~~IpGVs~~~A~~I~~~-yp 258 (311)
T 2ziu_A 234 VFARQLMQISGVSGDKAAAVLEH-YS 258 (311)
T ss_dssp HHHHHHTTBTTCCHHHHHHHHHH-CS
T ss_pred HHHHHHHhccCCCHHHHHHHHHH-CC
Confidence 35788999999999999999986 44
No 80
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=21.79 E-value=23 Score=35.46 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=24.8
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhCCCCCCcccHH
Q 027752 106 KAVSELTVLKGVGPATASAVLAAYAPDLAPFMSDE 140 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDE 140 (219)
+....|..++||||.+|..|+.--. .+.||-|-+
T Consensus 505 As~~~L~~v~GiG~~~A~~Iv~yR~-~~G~f~sr~ 538 (785)
T 3bzc_A 505 ASAALLARISGLNSTLAQNIVAHRD-ANGAFRTRD 538 (785)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHH-HHCCCSSGG
T ss_pred CCHHHHhhcCCCCHHHHHHHHHHHH-hcCCCCCHH
Confidence 3457888999999999999998632 234555543
No 81
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=21.13 E-value=50 Score=30.31 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHHhhCccH-HHHHHHhhccCCCChHHHHHHHH
Q 027752 85 LDDSSVKSASEKAFKSLPDL-TKAVSELTVLKGVGPATASAVLA 127 (219)
Q Consensus 85 N~~~~V~~~t~~Af~~l~d~-~~al~~L~~LkGVGPATASaiLa 127 (219)
-++..++... +-|..+..+ .+.++.|.+..|||+.+|..|--
T Consensus 323 l~~~iae~Lv-~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 323 IPLSIGYNVV-RMFKTLDQISKASVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp CCHHHHHHHH-HHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred CCHHHHHHHH-HHhCCHHHHHhCCHHHHHhccCccHHHHHHHHH
Confidence 4455555544 446555544 34588889999999999988743
No 82
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=20.80 E-value=66 Score=30.99 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=14.9
Q ss_pred HHHHhhccCCCChHHHHHHHHh
Q 027752 107 AVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~ 128 (219)
..+.|..+.||||-+|..|...
T Consensus 542 ~~e~l~~i~giG~~~A~si~~f 563 (586)
T 4glx_A 542 SIEELQKVPDVGIVVASHVHNF 563 (586)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHH
T ss_pred CHHHHhcCCCccHHHHHHHHHH
Confidence 3566777777777777776653
No 83
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=20.39 E-value=93 Score=27.80 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=19.6
Q ss_pred cHHHHHHHhhc------cCCCChHHHHHHHHh
Q 027752 103 DLTKAVSELTV------LKGVGPATASAVLAA 128 (219)
Q Consensus 103 d~~~al~~L~~------LkGVGPATASaiLa~ 128 (219)
+----+.+|+. ++||||-||--+|.-
T Consensus 220 ~q~id~~~L~G~D~~d~IpGIG~KtA~kLl~~ 251 (379)
T 1ul1_X 220 EQFVDLCILLGSDYCESIRGIGPKRAVDLIQK 251 (379)
T ss_dssp HHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCCCCCCcCHHHHHHHHHH
Confidence 33344566665 999999999998875
Done!