Query 027753
Match_columns 219
No_of_seqs 138 out of 1200
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 14:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1577 Aldo/keto reductase fa 100.0 2.6E-51 5.6E-56 338.9 19.5 202 2-212 6-213 (300)
2 COG0656 ARA1 Aldo/keto reducta 100.0 3.3E-51 7.1E-56 337.9 19.0 182 2-210 5-193 (280)
3 COG0667 Tas Predicted oxidored 100.0 3.1E-43 6.7E-48 299.3 19.2 183 2-212 4-211 (316)
4 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2E-42 4.3E-47 288.8 20.0 176 10-212 2-184 (267)
5 PRK11565 dkgA 2,5-diketo-D-glu 100.0 2.1E-42 4.6E-47 289.7 19.5 181 2-210 6-190 (275)
6 TIGR01293 Kv_beta voltage-depe 100.0 1.3E-41 2.9E-46 290.3 20.0 183 2-211 2-210 (317)
7 KOG1575 Voltage-gated shaker-l 100.0 2.1E-41 4.5E-46 284.8 18.8 184 3-213 16-223 (336)
8 PRK10625 tas putative aldo-ket 100.0 3.9E-41 8.4E-46 290.6 19.8 199 2-211 4-238 (346)
9 cd06660 Aldo_ket_red Aldo-keto 100.0 7E-41 1.5E-45 281.3 20.4 184 2-212 2-204 (285)
10 PRK09912 L-glyceraldehyde 3-ph 100.0 9.2E-41 2E-45 288.2 19.4 185 2-212 16-228 (346)
11 PLN02587 L-galactose dehydroge 100.0 1.2E-39 2.6E-44 277.9 20.0 185 2-211 2-209 (314)
12 PRK10376 putative oxidoreducta 100.0 4.7E-39 1E-43 271.4 19.5 184 2-212 9-218 (290)
13 PRK14863 bifunctional regulato 100.0 4.2E-39 9.1E-44 271.7 15.6 179 8-213 2-199 (292)
14 PF00248 Aldo_ket_red: Aldo/ke 100.0 4.7E-38 1E-42 263.9 18.2 173 13-211 1-192 (283)
15 COG4989 Predicted oxidoreducta 100.0 3.4E-37 7.4E-42 246.2 11.2 188 2-216 3-218 (298)
16 COG1453 Predicted oxidoreducta 100.0 8.2E-34 1.8E-38 237.9 14.0 183 2-209 4-205 (391)
17 KOG1576 Predicted oxidoreducta 100.0 5E-32 1.1E-36 218.3 14.6 183 2-210 25-233 (342)
18 KOG3023 Glutamate-cysteine lig 98.4 6.5E-07 1.4E-11 72.1 6.4 72 136-208 153-228 (285)
19 COG0635 HemN Coproporphyrinoge 86.5 11 0.00023 33.7 10.8 99 51-161 173-273 (416)
20 cd03316 MR_like Mandelate race 82.8 30 0.00066 29.8 16.6 148 22-208 139-299 (357)
21 PRK05692 hydroxymethylglutaryl 82.5 15 0.00032 31.1 9.4 99 84-205 26-138 (287)
22 cd03319 L-Ala-DL-Glu_epimerase 79.7 37 0.0008 28.8 15.5 148 22-209 134-288 (316)
23 COG1748 LYS9 Saccharopine dehy 78.0 20 0.00043 31.8 9.0 80 22-112 77-159 (389)
24 KOG1549 Cysteine desulfurase N 76.4 54 0.0012 29.4 11.2 65 141-205 144-216 (428)
25 KOG0259 Tyrosine aminotransfer 74.8 61 0.0013 28.8 13.1 139 22-205 79-237 (447)
26 PLN02746 hydroxymethylglutaryl 74.0 45 0.00098 29.1 10.1 99 83-204 67-179 (347)
27 COG1831 Predicted metal-depend 72.9 36 0.00078 28.5 8.7 64 138-201 106-185 (285)
28 TIGR01278 DPOR_BchB light-inde 71.6 76 0.0017 29.1 11.5 61 47-112 67-127 (511)
29 cd03174 DRE_TIM_metallolyase D 71.4 47 0.001 27.0 9.4 98 86-207 21-135 (265)
30 PRK05283 deoxyribose-phosphate 70.5 47 0.001 27.7 9.0 84 12-102 134-227 (257)
31 cd07948 DRE_TIM_HCS Saccharomy 69.8 64 0.0014 26.8 10.7 37 4-45 7-43 (262)
32 PRK08609 hypothetical protein; 67.9 1.1E+02 0.0023 28.7 13.7 155 24-208 349-526 (570)
33 TIGR01856 hisJ_fam histidinol 67.5 68 0.0015 26.3 11.4 85 23-110 14-114 (253)
34 PF07994 NAD_binding_5: Myo-in 67.3 18 0.00039 30.8 6.0 100 82-205 131-230 (295)
35 PRK08392 hypothetical protein; 65.7 68 0.0015 25.6 14.5 153 24-208 14-182 (215)
36 TIGR01228 hutU urocanate hydra 64.1 26 0.00056 32.0 6.6 102 49-182 140-259 (545)
37 PRK07945 hypothetical protein; 64.1 96 0.0021 26.8 13.3 158 23-208 110-292 (335)
38 PLN02438 inositol-3-phosphate 63.6 50 0.0011 30.2 8.3 96 83-203 207-302 (510)
39 COG0135 TrpF Phosphoribosylant 63.3 78 0.0017 25.5 8.8 56 144-204 42-102 (208)
40 cd00308 enolase_like Enolase-s 62.9 78 0.0017 25.4 9.8 70 141-210 133-206 (229)
41 PF02679 ComA: (2R)-phospho-3- 62.6 35 0.00076 28.2 6.7 77 23-109 83-169 (244)
42 PRK05414 urocanate hydratase; 61.1 31 0.00068 31.6 6.5 102 49-182 149-268 (556)
43 TIGR00735 hisF imidazoleglycer 59.2 79 0.0017 26.0 8.4 60 143-203 189-253 (254)
44 cd03315 MLE_like Muconate lact 59.1 1E+02 0.0022 25.4 15.9 148 23-209 86-240 (265)
45 PRK06015 keto-hydroxyglutarate 58.8 31 0.00067 27.6 5.6 58 141-205 42-102 (201)
46 cd07944 DRE_TIM_HOA_like 4-hyd 58.6 1.1E+02 0.0023 25.5 10.4 100 84-204 20-126 (266)
47 PF08282 Hydrolase_3: haloacid 57.8 75 0.0016 24.9 8.0 70 139-210 18-105 (254)
48 PF01487 DHquinase_I: Type I 3 57.4 98 0.0021 24.7 10.8 121 19-171 70-194 (224)
49 TIGR00126 deoC deoxyribose-pho 57.2 1E+02 0.0022 24.8 8.9 78 15-100 123-205 (211)
50 PLN02389 biotin synthase 55.3 1.5E+02 0.0032 26.2 11.1 105 21-153 116-227 (379)
51 PF01408 GFO_IDH_MocA: Oxidore 53.5 74 0.0016 22.2 6.9 60 145-205 54-118 (120)
52 COG3589 Uncharacterized conser 53.0 1.6E+02 0.0034 25.7 9.9 158 13-209 3-179 (360)
53 PF14871 GHL6: Hypothetical gl 52.6 12 0.00026 27.7 2.3 23 188-210 45-67 (132)
54 COG3623 SgaU Putative L-xylulo 51.5 66 0.0014 26.6 6.4 70 6-77 65-155 (287)
55 PF01175 Urocanase: Urocanase; 51.2 58 0.0013 29.9 6.6 122 29-182 107-258 (546)
56 PF01081 Aldolase: KDPG and KH 51.1 33 0.00072 27.3 4.7 58 141-205 46-106 (196)
57 COG1242 Predicted Fe-S oxidore 50.3 1.3E+02 0.0028 25.6 8.0 91 53-181 170-265 (312)
58 PRK13796 GTPase YqeH; Provisio 48.8 1.8E+02 0.004 25.3 11.7 108 22-161 55-170 (365)
59 PF00148 Oxidored_nitro: Nitro 48.6 1.8E+02 0.004 25.3 10.5 139 47-209 56-226 (398)
60 PRK06552 keto-hydroxyglutarate 48.2 58 0.0013 26.2 5.7 57 141-205 51-114 (213)
61 PLN00191 enolase 48.1 2.2E+02 0.0047 25.9 10.2 65 141-205 324-393 (457)
62 PRK01222 N-(5'-phosphoribosyl) 47.9 1.4E+02 0.0031 23.8 8.2 32 151-182 52-86 (210)
63 PF03102 NeuB: NeuB family; I 47.8 1.6E+02 0.0034 24.3 8.8 109 19-161 51-179 (241)
64 PRK12581 oxaloacetate decarbox 47.6 2E+02 0.0044 26.2 9.6 49 16-64 97-145 (468)
65 COG1149 MinD superfamily P-loo 47.5 1.7E+02 0.0038 24.7 8.6 42 164-209 205-248 (284)
66 cd01965 Nitrogenase_MoFe_beta_ 47.3 2.1E+02 0.0045 25.5 10.3 105 46-171 62-180 (428)
67 PRK13958 N-(5'-phosphoribosyl) 47.1 90 0.0019 24.9 6.7 31 152-182 51-84 (207)
68 COG1140 NarY Nitrate reductase 46.6 8.9 0.00019 33.7 0.8 54 149-202 261-317 (513)
69 cd07948 DRE_TIM_HCS Saccharomy 46.4 1.7E+02 0.0037 24.3 9.0 93 85-206 23-131 (262)
70 PF05913 DUF871: Bacterial pro 46.4 16 0.00035 32.0 2.4 151 22-209 12-178 (357)
71 TIGR01862 N2-ase-Ialpha nitrog 46.1 2.2E+02 0.0048 25.5 13.1 63 45-112 97-161 (443)
72 PRK15108 biotin synthase; Prov 46.0 2E+02 0.0043 24.9 11.2 106 21-154 76-186 (345)
73 COG1104 NifS Cysteine sulfinat 44.9 97 0.0021 27.5 6.9 68 138-205 101-176 (386)
74 COG2040 MHT1 Homocysteine/sele 44.4 2E+02 0.0044 24.5 11.7 157 22-207 41-240 (300)
75 PF14606 Lipase_GDSL_3: GDSL-l 43.9 1.6E+02 0.0034 23.1 7.6 101 8-111 33-147 (178)
76 COG2987 HutU Urocanate hydrata 43.8 68 0.0015 29.1 5.7 45 138-182 219-268 (561)
77 PRK14017 galactonate dehydrata 43.7 2.2E+02 0.0047 24.9 9.2 68 141-208 216-287 (382)
78 PF07021 MetW: Methionine bios 43.1 1.7E+02 0.0037 23.3 8.5 100 85-209 60-168 (193)
79 PRK09248 putative hydrolase; V 42.9 1.8E+02 0.0039 23.6 13.1 24 24-47 19-42 (246)
80 PRK00912 ribonuclease P protei 41.9 1.9E+02 0.004 23.4 11.0 26 23-48 15-40 (237)
81 KOG2741 Dimeric dihydrodiol de 41.2 1.2E+02 0.0026 26.5 6.8 64 141-205 60-128 (351)
82 PRK02910 light-independent pro 41.2 2.9E+02 0.0063 25.4 12.4 60 47-112 67-126 (519)
83 PF01890 CbiG_C: Cobalamin syn 41.2 56 0.0012 23.7 4.3 23 186-208 44-66 (121)
84 cd03318 MLE Muconate Lactonizi 39.1 2.6E+02 0.0055 24.2 9.2 67 141-207 227-297 (365)
85 TIGR01182 eda Entner-Doudoroff 38.7 2E+02 0.0044 23.0 8.7 58 141-205 46-106 (204)
86 PF01784 NIF3: NIF3 (NGG1p int 38.6 30 0.00064 28.3 2.7 56 4-60 163-234 (241)
87 PLN02363 phosphoribosylanthran 38.2 1.4E+02 0.003 24.9 6.6 42 141-182 87-131 (256)
88 cd07938 DRE_TIM_HMGL 3-hydroxy 38.2 2.4E+02 0.0051 23.6 8.6 37 4-45 5-41 (274)
89 PRK08123 histidinol-phosphatas 37.4 2.4E+02 0.0052 23.3 11.7 24 24-47 19-42 (270)
90 COG0677 WecC UDP-N-acetyl-D-ma 37.2 60 0.0013 29.0 4.4 123 66-203 118-243 (436)
91 PRK07114 keto-hydroxyglutarate 37.2 79 0.0017 25.7 4.9 43 156-205 72-117 (222)
92 TIGR01496 DHPS dihydropteroate 37.1 2.4E+02 0.0052 23.3 9.3 62 138-206 60-124 (257)
93 COG3392 Adenine-specific DNA m 36.8 2.6E+02 0.0057 23.7 9.9 115 67-184 168-309 (330)
94 PRK09413 IS2 repressor TnpA; R 36.8 71 0.0015 23.0 4.2 42 20-61 12-54 (121)
95 PRK08776 cystathionine gamma-s 36.8 3E+02 0.0065 24.3 9.9 69 141-209 112-184 (405)
96 PRK07328 histidinol-phosphatas 36.6 2.4E+02 0.0053 23.2 14.6 176 24-208 18-229 (269)
97 PRK00507 deoxyribose-phosphate 36.5 2.3E+02 0.0049 23.0 7.5 80 13-99 125-208 (221)
98 cd04740 DHOD_1B_like Dihydroor 36.3 2.5E+02 0.0055 23.4 15.4 164 22-201 100-286 (296)
99 PF13378 MR_MLE_C: Enolase C-t 36.2 1E+02 0.0022 21.5 4.9 47 162-208 7-54 (111)
100 cd07943 DRE_TIM_HOA 4-hydroxy- 36.2 2.4E+02 0.0053 23.1 10.4 103 84-205 22-130 (263)
101 PF01118 Semialdhyde_dh: Semia 35.8 52 0.0011 23.5 3.4 27 22-48 75-101 (121)
102 cd00959 DeoC 2-deoxyribose-5-p 35.5 2.2E+02 0.0048 22.4 8.4 78 15-98 122-202 (203)
103 KOG0693 Myo-inositol-1-phospha 35.5 3.2E+02 0.0069 24.2 9.5 84 14-111 137-235 (512)
104 TIGR02660 nifV_homocitr homoci 35.3 3E+02 0.0066 23.9 11.2 91 85-204 24-130 (365)
105 PRK10206 putative oxidoreducta 35.0 1.8E+02 0.004 25.0 7.2 61 144-205 55-120 (344)
106 PF05049 IIGP: Interferon-indu 34.1 1.7E+02 0.0036 26.0 6.7 58 49-112 129-202 (376)
107 PRK11579 putative oxidoreducta 34.0 2E+02 0.0043 24.6 7.3 61 144-205 55-120 (346)
108 PF02310 B12-binding: B12 bind 33.2 1.7E+02 0.0037 20.4 7.5 71 141-211 17-92 (121)
109 TIGR02534 mucon_cyclo muconate 33.0 3.3E+02 0.007 23.6 8.8 68 141-208 226-297 (368)
110 COG3737 Uncharacterized conser 32.9 73 0.0016 23.3 3.6 58 151-209 42-105 (127)
111 cd07942 DRE_TIM_LeuA Mycobacte 32.9 3E+02 0.0065 23.2 9.6 90 84-202 23-135 (284)
112 TIGR00048 radical SAM enzyme, 32.9 2.6E+02 0.0056 24.4 7.7 73 137-209 240-331 (355)
113 cd00405 PRAI Phosphoribosylant 32.8 1.5E+02 0.0032 23.3 5.8 12 150-161 96-107 (203)
114 cd00423 Pterin_binding Pterin 32.8 2.8E+02 0.0061 22.8 10.0 103 81-207 22-127 (258)
115 PRK05588 histidinol-phosphatas 32.2 2.8E+02 0.006 22.6 14.2 81 23-110 15-103 (255)
116 TIGR01283 nifE nitrogenase mol 32.2 3.8E+02 0.0082 24.1 13.5 63 45-112 101-164 (456)
117 TIGR02026 BchE magnesium-proto 32.0 4E+02 0.0086 24.3 9.3 21 81-101 223-243 (497)
118 PLN03228 methylthioalkylmalate 31.9 4.1E+02 0.009 24.5 10.3 22 84-105 106-127 (503)
119 PF05368 NmrA: NmrA-like famil 31.7 2.3E+02 0.0051 22.3 7.0 68 145-213 37-107 (233)
120 PF04430 DUF498: Protein of un 31.6 77 0.0017 22.4 3.6 47 162-208 41-88 (110)
121 PRK06740 histidinol-phosphatas 31.4 3.4E+02 0.0074 23.4 12.7 115 87-208 156-292 (331)
122 cd00739 DHPS DHPS subgroup of 31.4 3E+02 0.0065 22.7 9.6 65 137-206 60-126 (257)
123 PF06819 Arc_PepC: Archaeal Pe 31.4 1.8E+02 0.0039 21.0 5.3 70 63-155 36-105 (110)
124 PRK13347 coproporphyrinogen II 31.3 3.9E+02 0.0085 24.0 11.9 99 52-161 189-288 (453)
125 COG1168 MalY Bifunctional PLP- 31.1 3.8E+02 0.0082 23.8 11.1 76 23-112 40-118 (388)
126 PF00697 PRAI: N-(5'phosphorib 30.8 2E+02 0.0042 22.6 6.2 41 143-183 38-81 (197)
127 cd07938 DRE_TIM_HMGL 3-hydroxy 30.7 3.2E+02 0.0069 22.8 8.6 98 84-204 20-131 (274)
128 PRK10530 pyridoxal phosphate ( 30.7 2.9E+02 0.0063 22.3 8.8 67 139-207 23-108 (272)
129 PRK09536 btuD corrinoid ABC tr 30.5 2E+02 0.0044 25.5 6.8 70 141-210 279-350 (402)
130 PRK00164 moaA molybdenum cofac 30.4 3.4E+02 0.0073 23.0 15.6 159 21-203 49-226 (331)
131 PRK15072 bifunctional D-altron 30.4 3.8E+02 0.0083 23.6 9.3 68 141-208 245-316 (404)
132 PRK05628 coproporphyrinogen II 30.3 3.7E+02 0.0079 23.4 11.9 29 78-107 170-198 (375)
133 PRK13505 formate--tetrahydrofo 30.3 80 0.0017 29.4 4.3 33 172-204 372-405 (557)
134 cd04742 NPD_FabD 2-Nitropropan 30.2 2.4E+02 0.0052 25.3 7.2 66 143-209 29-104 (418)
135 TIGR00044 pyridoxal phosphate 30.0 2.9E+02 0.0064 22.2 7.6 18 143-161 41-58 (229)
136 COG1817 Uncharacterized protei 29.9 3.1E+02 0.0067 23.8 7.4 101 91-209 171-280 (346)
137 TIGR02765 crypto_DASH cryptoch 29.8 3.4E+02 0.0074 24.0 8.2 67 140-206 61-131 (429)
138 COG5016 Pyruvate/oxaloacetate 29.8 4.2E+02 0.0091 23.9 8.6 38 22-59 96-136 (472)
139 PF06506 PrpR_N: Propionate ca 29.7 1.6E+02 0.0035 22.6 5.5 67 137-208 62-133 (176)
140 COG0065 LeuC 3-isopropylmalate 29.4 34 0.00074 30.3 1.7 16 188-203 77-92 (423)
141 PF04223 CitF: Citrate lyase, 29.0 4.2E+02 0.0092 24.0 8.3 93 53-180 8-104 (466)
142 PRK10799 metal-binding protein 28.9 83 0.0018 25.8 3.9 31 30-61 200-230 (247)
143 PRK12323 DNA polymerase III su 28.9 4.8E+02 0.01 25.2 9.1 27 140-166 139-168 (700)
144 PF01527 HTH_Tnp_1: Transposas 28.7 26 0.00056 22.6 0.7 41 21-61 7-48 (76)
145 PF11181 YflT: Heat induced st 28.7 1E+02 0.0023 21.4 3.9 30 47-77 6-35 (103)
146 COG2099 CobK Precorrin-6x redu 28.5 1.7E+02 0.0037 24.4 5.5 57 150-206 43-99 (257)
147 PF00388 PI-PLC-X: Phosphatidy 28.5 46 0.00099 24.7 2.1 17 27-43 29-45 (146)
148 PRK03995 hypothetical protein; 28.5 2.9E+02 0.0062 23.2 7.0 81 9-100 180-264 (267)
149 PRK08057 cobalt-precorrin-6x r 28.5 1.5E+02 0.0032 24.5 5.3 54 154-207 46-99 (248)
150 cd01967 Nitrogenase_MoFe_alpha 28.4 4E+02 0.0088 23.3 13.8 103 46-171 68-184 (406)
151 PRK08195 4-hyroxy-2-oxovalerat 28.3 3.9E+02 0.0085 23.1 16.9 36 4-44 10-45 (337)
152 cd03325 D-galactonate_dehydrat 28.2 3.9E+02 0.0084 23.0 9.5 67 141-207 215-285 (352)
153 PRK05301 pyrroloquinoline quin 27.9 4E+02 0.0087 23.1 9.8 109 21-153 46-155 (378)
154 PRK14847 hypothetical protein; 27.8 4.1E+02 0.0088 23.1 9.4 96 85-209 55-179 (333)
155 PRK05939 hypothetical protein; 27.6 2.6E+02 0.0056 24.7 7.0 63 147-209 105-170 (397)
156 COG1795 Formaldehyde-activatin 27.3 1.2E+02 0.0026 23.2 4.1 30 49-78 83-115 (170)
157 COG0135 TrpF Phosphoribosylant 27.3 92 0.002 25.1 3.7 87 30-161 15-109 (208)
158 COG0673 MviM Predicted dehydro 27.1 2.5E+02 0.0055 23.5 6.7 64 141-205 55-123 (342)
159 cd07939 DRE_TIM_NifV Streptomy 27.1 3.5E+02 0.0076 22.1 11.7 96 84-208 20-131 (259)
160 smart00148 PLCXc Phospholipase 27.1 2.6E+02 0.0056 20.6 7.1 65 27-93 31-114 (135)
161 PRK04132 replication factor C 27.0 5.2E+02 0.011 25.6 9.3 61 139-202 644-708 (846)
162 TIGR00190 thiC thiamine biosyn 26.9 4.7E+02 0.01 23.5 8.6 92 25-154 78-177 (423)
163 cd07945 DRE_TIM_CMS Leptospira 26.9 3.8E+02 0.0082 22.4 15.9 39 3-46 3-42 (280)
164 COG0274 DeoC Deoxyribose-phosp 26.8 3.6E+02 0.0077 22.1 8.7 81 11-99 127-212 (228)
165 cd07491 Peptidases_S8_7 Peptid 26.8 2E+02 0.0044 23.4 5.8 39 22-60 87-132 (247)
166 TIGR03822 AblA_like_2 lysine-2 26.7 4E+02 0.0088 22.7 13.7 122 23-171 121-253 (321)
167 COG1121 ZnuC ABC-type Mn/Zn tr 26.6 1.7E+02 0.0037 24.4 5.3 50 99-169 156-206 (254)
168 COG1099 Predicted metal-depend 26.4 3.2E+02 0.007 22.5 6.6 71 138-209 44-136 (254)
169 PF04244 DPRP: Deoxyribodipyri 26.2 1.7E+02 0.0036 23.8 5.1 61 145-206 55-123 (224)
170 PF05990 DUF900: Alpha/beta hy 26.2 3.5E+02 0.0076 21.8 10.6 94 67-171 16-113 (233)
171 TIGR00612 ispG_gcpE 1-hydroxy- 26.2 4.4E+02 0.0096 23.0 8.1 69 136-204 31-125 (346)
172 PF13989 YejG: YejG-like prote 26.1 1.1E+02 0.0024 21.7 3.4 34 67-100 33-69 (106)
173 PRK14478 nitrogenase molybdenu 26.1 5E+02 0.011 23.6 12.9 103 45-171 99-215 (475)
174 TIGR03597 GTPase_YqeH ribosome 25.8 4.4E+02 0.0096 22.9 8.8 79 68-170 91-176 (360)
175 cd03322 rpsA The starvation se 25.7 4.4E+02 0.0095 22.8 14.7 68 141-208 202-273 (361)
176 COG4669 EscJ Type III secretor 25.7 3.9E+02 0.0084 22.1 11.1 77 20-97 27-122 (246)
177 cd01968 Nitrogenase_NifE_I Nit 25.6 4.7E+02 0.01 23.1 13.6 65 43-112 64-129 (410)
178 COG2949 SanA Uncharacterized m 25.6 3.7E+02 0.008 21.9 8.7 105 74-207 65-180 (235)
179 PF12728 HTH_17: Helix-turn-he 25.5 1.5E+02 0.0032 17.3 4.0 28 143-170 16-48 (51)
180 PRK09856 fructoselysine 3-epim 25.5 3.7E+02 0.008 21.8 10.0 33 13-45 2-34 (275)
181 COG0820 Predicted Fe-S-cluster 25.4 4.6E+02 0.01 23.0 9.6 82 81-185 130-222 (349)
182 PF02571 CbiJ: Precorrin-6x re 25.4 1.7E+02 0.0038 24.1 5.1 55 153-207 46-100 (249)
183 PF14542 Acetyltransf_CG: GCN5 24.9 66 0.0014 21.3 2.2 21 189-209 44-64 (78)
184 PRK15126 thiamin pyrimidine py 24.8 3.8E+02 0.0083 21.8 8.0 68 139-208 22-107 (272)
185 PRK07027 cobalamin biosynthesi 24.6 1.2E+02 0.0025 22.2 3.6 23 186-208 46-68 (126)
186 cd05560 Xcc1710_like Xcc1710_l 24.5 2.4E+02 0.0051 20.0 5.1 46 162-208 42-87 (109)
187 COG4992 ArgD Ornithine/acetylo 24.3 5E+02 0.011 23.2 8.0 16 190-205 208-223 (404)
188 cd05125 Mth938_2P1-like Mth938 24.2 2.4E+02 0.0052 20.3 5.1 55 154-208 29-89 (114)
189 PRK02083 imidazole glycerol ph 24.2 3.9E+02 0.0085 21.7 8.1 62 142-203 186-251 (253)
190 PRK14455 ribosomal RNA large s 24.1 4.8E+02 0.01 22.7 8.3 72 137-208 244-334 (356)
191 PF02603 Hpr_kinase_N: HPr Ser 24.1 1E+02 0.0022 22.4 3.3 39 163-205 72-110 (127)
192 PF08671 SinI: Anti-repressor 24.1 89 0.0019 16.9 2.1 17 23-39 2-18 (30)
193 cd02742 GH20_hexosaminidase Be 24.0 1.7E+02 0.0037 24.7 5.0 21 186-206 71-91 (303)
194 cd03323 D-glucarate_dehydratas 23.5 3.8E+02 0.0083 23.6 7.3 69 141-209 249-321 (395)
195 CHL00076 chlB photochlorophyll 22.9 6E+02 0.013 23.4 12.1 61 47-112 67-128 (513)
196 PF13380 CoA_binding_2: CoA bi 22.9 1.5E+02 0.0032 21.1 3.9 20 187-206 89-108 (116)
197 PF01680 SOR_SNZ: SOR/SNZ fami 22.8 44 0.00095 26.4 1.0 15 90-104 86-100 (208)
198 PRK12331 oxaloacetate decarbox 22.8 5.8E+02 0.013 23.1 8.7 24 21-44 93-116 (448)
199 COG2896 MoaA Molybdenum cofact 22.4 5.1E+02 0.011 22.4 10.2 108 21-153 43-151 (322)
200 PF13289 SIR2_2: SIR2-like dom 22.3 2.8E+02 0.006 19.8 5.4 65 139-204 74-143 (143)
201 COG1751 Uncharacterized conser 22.2 2.6E+02 0.0057 21.5 5.1 69 23-99 13-85 (186)
202 TIGR00676 fadh2 5,10-methylene 22.2 4.6E+02 0.0099 21.7 13.6 149 26-203 17-186 (272)
203 cd07945 DRE_TIM_CMS Leptospira 22.1 4.7E+02 0.01 21.9 9.8 16 190-205 118-133 (280)
204 TIGR01928 menC_lowGC/arch o-su 22.0 5E+02 0.011 22.1 14.5 148 22-209 132-283 (324)
205 KOG3206 Alpha-tubulin folding 22.0 42 0.00091 27.0 0.8 16 34-49 197-212 (234)
206 TIGR02370 pyl_corrinoid methyl 22.0 3.9E+02 0.0085 20.9 12.1 57 144-200 104-163 (197)
207 COG2759 MIS1 Formyltetrahydrof 21.8 1.6E+02 0.0034 26.9 4.4 49 157-205 353-403 (554)
208 PF01904 DUF72: Protein of unk 21.8 2.9E+02 0.0064 22.2 5.8 60 44-111 26-96 (230)
209 COG0563 Adk Adenylate kinase a 21.7 3.9E+02 0.0084 20.7 6.4 88 14-104 4-110 (178)
210 PRK13803 bifunctional phosphor 21.6 6.8E+02 0.015 23.6 8.9 31 152-182 55-88 (610)
211 COG2185 Sbm Methylmalonyl-CoA 21.5 3.6E+02 0.0079 20.3 11.8 110 12-161 13-124 (143)
212 TIGR01917 gly_red_sel_B glycin 21.5 5.5E+02 0.012 23.2 7.6 69 141-209 288-373 (431)
213 TIGR03699 mena_SCO4550 menaqui 21.2 5.2E+02 0.011 22.0 9.7 112 20-153 71-195 (340)
214 PRK00730 rnpA ribonuclease P; 21.2 3.6E+02 0.0079 20.2 6.7 45 67-111 46-93 (138)
215 PRK04452 acetyl-CoA decarbonyl 21.1 2.9E+02 0.0064 23.8 5.8 47 157-208 129-183 (319)
216 TIGR01918 various_sel_PB selen 21.1 5.6E+02 0.012 23.1 7.6 69 141-209 288-373 (431)
217 cd07943 DRE_TIM_HOA 4-hydroxy- 21.0 4.7E+02 0.01 21.4 15.9 36 4-44 7-42 (263)
218 PRK13602 putative ribosomal pr 20.9 2.7E+02 0.0058 18.6 6.7 57 145-208 3-61 (82)
219 PRK09058 coproporphyrinogen II 20.9 6.2E+02 0.013 22.7 11.0 74 78-161 225-301 (449)
220 PRK07094 biotin synthase; Prov 20.8 5.1E+02 0.011 21.8 10.2 124 21-171 70-203 (323)
221 PRK14461 ribosomal RNA large s 20.8 5.9E+02 0.013 22.5 8.7 34 138-171 184-224 (371)
222 TIGR02455 TreS_stutzeri trehal 20.8 3E+02 0.0064 26.4 6.1 61 35-104 112-175 (688)
223 cd00814 MetRS_core catalytic c 20.8 1.5E+02 0.0033 25.2 4.1 47 82-154 68-114 (319)
224 PRK07379 coproporphyrinogen II 20.7 5.9E+02 0.013 22.4 11.2 123 28-161 116-252 (400)
225 PF10941 DUF2620: Protein of u 20.7 1.4E+02 0.0031 21.7 3.2 25 143-168 85-111 (117)
226 cd00248 Mth938-like Mth938-lik 20.7 3.1E+02 0.0066 19.4 5.1 47 162-208 41-87 (109)
227 PRK07764 DNA polymerase III su 20.6 8.3E+02 0.018 24.2 9.4 62 139-203 134-199 (824)
228 PLN02746 hydroxymethylglutaryl 20.5 5.8E+02 0.013 22.3 16.2 37 5-46 54-90 (347)
229 PRK09240 thiH thiamine biosynt 20.5 5.8E+02 0.013 22.3 9.8 109 20-153 103-216 (371)
230 cd00959 DeoC 2-deoxyribose-5-p 20.3 4.3E+02 0.0093 20.7 8.8 80 21-103 66-150 (203)
231 PRK07003 DNA polymerase III su 20.3 8.5E+02 0.018 24.1 13.9 60 140-202 134-197 (830)
232 PLN02623 pyruvate kinase 20.2 7.4E+02 0.016 23.4 11.5 93 4-112 259-353 (581)
233 COG1801 Uncharacterized conser 20.0 5.2E+02 0.011 21.5 10.8 93 12-112 3-115 (263)
No 1
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.6e-51 Score=338.93 Aligned_cols=202 Identities=44% Similarity=0.635 Sum_probs=180.3
Q ss_pred eeecCCCCccccceeccccCCchhHHHHHHHHHHhCCceeecCcccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC-
Q 027753 2 AITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS- 80 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~- 80 (219)
++++++|.+||.||||||+.++.++.++++.|++.||||||||..|+||+.+|+||++.+.++.++|+++||+||+|+.
T Consensus 6 ~~~Ln~G~~mP~iGlGTw~~~~~~~~~aV~~Al~~GYRHIDtA~~Y~NE~evG~aik~~i~~~~v~RediFiTSKlw~~~ 85 (300)
T KOG1577|consen 6 TVKLNNGFKMPIIGLGTWQSPPGQVAEAVKAAIKAGYRHIDTAHVYGNEKEVGEAIKELLAEGGVKREDIFITSKLWPTD 85 (300)
T ss_pred eEeccCCCccceeeeEecccChhhHHHHHHHHHHhCcceeechhhhCChHHHHHHHHHHhhhCCcchhhheeeeccCccc
Confidence 4789999999999999999999999999999999999999999999999999999999998888999999999999986
Q ss_pred -CchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEe
Q 027753 81 -DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGI 159 (219)
Q Consensus 81 -~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 159 (219)
.++.++.++++||++||+||+|+|++|||-..++ ..+.+..+.. .....++.++|++||+++++|++|+|||
T Consensus 86 ~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~------~~~~~~~~~~-~~~~~~~~~tW~amE~~~~~Gl~rsIGV 158 (300)
T KOG1577|consen 86 HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKD------SFPKDENGKV-NYDDVDRIETWKAMEKLVDEGLVRSIGV 158 (300)
T ss_pred cChhhHHHHHHHHHHHhChhhhheeeEecccccCC------CCCccccccc-ccccchHHHHHHHHHHHHHcCCceEeee
Confidence 7899999999999999999999999999987632 1222222222 1122368999999999999999999999
Q ss_pred cC--HHHHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCcccce
Q 027753 160 RL--NFVCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQFFCL 212 (219)
Q Consensus 160 S~--~~~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~~~~ 212 (219)
|| ..+++++++. ++|+|||+++||+-+ .+.|+++|+++||.+.||||+++-
T Consensus 159 SNF~~~~le~ll~~~ki~P~vnQvE~HP~~~--Q~~L~~fCk~~~I~v~AYSpLg~~ 213 (300)
T KOG1577|consen 159 SNFNIKQLEELLNLAKIKPAVNQVECHPYLQ--QKKLVEFCKSKGIVVTAYSPLGSP 213 (300)
T ss_pred ecCCHHHHHHHHhcCCCCCccceeeccCCcC--hHHHHHHHhhCCcEEEEecCCCCC
Confidence 99 9999999988 999999999999754 778999999999999999999754
No 2
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=3.3e-51 Score=337.92 Aligned_cols=182 Identities=40% Similarity=0.642 Sum_probs=167.6
Q ss_pred eeecCCCCccccceeccccCCchh-HHHHHHHHHHhCCceeecCcccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 027753 2 AITLNNGFKMPIIGLGVWRMDESN-IRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS 80 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~~~~~~-~~~~l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~ 80 (219)
+.++++|.+||.||||||++++.+ +.+++.+|++.|||+||||..||||+.+|+|+++ ..++|+++||+||+|+.
T Consensus 5 ~~~l~~g~~iP~iGlGt~~~~~~~~~~~av~~Al~~Gyr~IDTA~~YgnE~~VG~aI~~----s~v~ReelFittKvw~~ 80 (280)
T COG0656 5 KVTLNNGVEIPAIGLGTWQIGDDEWAVRAVRAALELGYRLIDTAEIYGNEEEVGEAIKE----SGVPREELFITTKVWPS 80 (280)
T ss_pred eeecCCCCcccCcceEeeecCCchhHHHHHHHHHHhCcceEecHhHhcCHHHHHHHHHh----cCCCHHHeEEEeecCCc
Confidence 578999999999999999998877 9999999999999999999999999999999999 34899999999999988
Q ss_pred C--chHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEE
Q 027753 81 D--HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIG 158 (219)
Q Consensus 81 ~--~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG 158 (219)
. ++.+.+++++||++||+||+|+|++|||.+. . ...++++|++||+++++|+||+||
T Consensus 81 ~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~-~--------------------~~~~~etw~alE~l~~~G~ir~IG 139 (280)
T COG0656 81 DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPN-K--------------------YVVIEETWKALEELVDEGLIRAIG 139 (280)
T ss_pred cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCc-c--------------------CccHHHHHHHHHHHHhcCCccEEE
Confidence 5 6999999999999999999999999999753 1 011679999999999999999999
Q ss_pred ecC--HHHHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCccc
Q 027753 159 IRL--NFVCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQFF 210 (219)
Q Consensus 159 vS~--~~~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~~ 210 (219)
||| ..+++++++. +.|++||+++||+.+ ..+|++||+++||.+++|||+.
T Consensus 140 VSNF~~~~L~~l~~~~~~~p~~NQIe~hp~~~--q~el~~~~~~~gI~v~AysPL~ 193 (280)
T COG0656 140 VSNFGVEHLEELLSLAKVKPAVNQIEYHPYLR--QPELLPFCQRHGIAVEAYSPLA 193 (280)
T ss_pred eeCCCHHHHHHHHHhcCCCCceEEEEeccCCC--cHHHHHHHHHcCCEEEEECCcc
Confidence 999 9999999887 889999999999987 4559999999999999999996
No 3
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.1e-43 Score=299.34 Aligned_cols=183 Identities=28% Similarity=0.350 Sum_probs=163.5
Q ss_pred eeecCCCCccccceeccccCCc-------hhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcE
Q 027753 2 AITLNNGFKMPIIGLGVWRMDE-------SNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDL 71 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~~~~-------~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~ 71 (219)
+..|++|++||+||||||.+.. .++.+++++|+++|||+||||+.|| +|+++|+||+.. + .|+++
T Consensus 4 r~lG~~gl~vs~lglG~~~~g~~~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~---~--~Rd~v 78 (316)
T COG0667 4 RRLGRSGLKVSPLGLGTMTLGGDTDDEEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKER---G--RRDKV 78 (316)
T ss_pred eecCCCCceecceeeeccccCCCCCchhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhcc---C--CCCeE
Confidence 4678899999999999998742 3556799999999999999999999 799999999985 3 28999
Q ss_pred EEEecCCCC------------CchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHH
Q 027753 72 FITTKLWNS------------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLE 139 (219)
Q Consensus 72 ~I~tK~~~~------------~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (219)
+|+||+... ++++|+++++.||+||||||||+|++|||+.. .+..
T Consensus 79 vIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~-----------------------~p~~ 135 (316)
T COG0667 79 VIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPE-----------------------TPIE 135 (316)
T ss_pred EEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCC-----------------------CCHH
Confidence 999999221 67899999999999999999999999998764 2378
Q ss_pred HHHHHHHHHHHcCCccEEEecC--HHHHHHHHhc-CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCcccce
Q 027753 140 TTWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY-IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQFFCL 212 (219)
Q Consensus 140 ~~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~-~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~~~~ 212 (219)
+++.+|.+|+++|+||+||+|| .+++.++++. .++.++|..||.+++..+.+++++|+++||++++|||+.+.
T Consensus 136 e~~~aL~~l~~~G~ir~iG~S~~~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G 211 (316)
T COG0667 136 ETLEALDELVREGKIRYIGVSNYSAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASG 211 (316)
T ss_pred HHHHHHHHHHHcCCeeEEEecCCCHHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCcccc
Confidence 8999999999999999999999 9999999988 68899999999999877788999999999999999998433
No 4
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2e-42 Score=288.78 Aligned_cols=176 Identities=31% Similarity=0.502 Sum_probs=157.1
Q ss_pred ccccceeccccCCchhHHHHHHHHHHhCCceeecCcccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC--CchHHHH
Q 027753 10 KMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS--DHGHVLE 87 (219)
Q Consensus 10 ~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~--~~~~i~~ 87 (219)
+||.||||||+++.+++.++++.|++.|||+||||+.||+|..+|+||++. + ++|++++|+||+|.. +++.+++
T Consensus 2 ~vs~lglGt~~~~~~~~~~~i~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~v~i~TK~~~~~~~~~~~~~ 77 (267)
T PRK11172 2 SIPAFGLGTFRLKDQVVIDSVKTALELGYRAIDTAQIYDNEAAVGQAIAES---G-VPRDELFITTKIWIDNLAKDKLIP 77 (267)
T ss_pred CCCCEeeEccccChHHHHHHHHHHHHcCCCEEEccchhCCHHHHHHHHHHc---C-CChhHeEEEEEeCCCCCCHHHHHH
Confidence 689999999999989999999999999999999999999999999999863 3 579999999999753 6789999
Q ss_pred HHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC--HHHH
Q 027753 88 ACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL--NFVC 165 (219)
Q Consensus 88 ~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~l 165 (219)
++++||++||+||||+|++|||+... ..+..++|++|++++++|+||+||||| .+++
T Consensus 78 ~~~~SL~rL~~d~iDl~~lH~~~~~~---------------------~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l 136 (267)
T PRK11172 78 SLKESLQKLRTDYVDLTLIHWPSPND---------------------EVSVEEFMQALLEAKKQGLTREIGISNFTIALM 136 (267)
T ss_pred HHHHHHHHhCCCceEEEEeCCCCCCC---------------------CCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHH
Confidence 99999999999999999999986421 123678999999999999999999999 8888
Q ss_pred HHHHhc---CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCcccce
Q 027753 166 VHCLVY---IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQFFCL 212 (219)
Q Consensus 166 ~~~~~~---~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~~~~ 212 (219)
.++++. ..|+++|.++|++.+ ..+++++|+++||++++|||+...
T Consensus 137 ~~~~~~~~~~~~~~~Q~~~~~~~~--~~~ll~~~~~~gi~v~a~spl~~G 184 (267)
T PRK11172 137 KQAIAAVGAENIATNQIELSPYLQ--NRKVVAFAKEHGIHVTSYMTLAYG 184 (267)
T ss_pred HHHHHhcCCCCCeEEeeecCCCCC--cHHHHHHHHHCCCEEEEECCCCCC
Confidence 888775 478999999999876 468999999999999999999543
No 5
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=2.1e-42 Score=289.69 Aligned_cols=181 Identities=41% Similarity=0.659 Sum_probs=164.7
Q ss_pred eeecCCCCccccceeccccCCchhHHHHHHHHHHhCCceeecCcccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCC
Q 027753 2 AITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSD 81 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~ 81 (219)
++++++|++||.||||||+++++++.++++.|++.|+|+||||+.||+|+.+|+||+.. + ++|++++|+||+|..+
T Consensus 6 ~~~l~~g~~v~~lglG~~~~~~~~~~~~l~~A~~~Gi~~~DTA~~Yg~E~~lG~al~~~---~-~~R~~~~i~tK~~~~~ 81 (275)
T PRK11565 6 VIKLQDGNVMPQLGLGVWQASNEEVITAIHKALEVGYRSIDTAAIYKNEEGVGKALKEA---S-VAREELFITTKLWNDD 81 (275)
T ss_pred eEEcCCCCccCCcceECccCCHHHHHHHHHHHHHhCCCEEEchhhhCCHHHHHHHHHHc---C-CCHHHEEEEEEecCcc
Confidence 56789999999999999999999999999999999999999999999999999999873 3 4699999999999888
Q ss_pred chHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC
Q 027753 82 HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL 161 (219)
Q Consensus 82 ~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 161 (219)
++.+++++++||++||+||||+|++|||+... ..+.++|++|++|+++|+||+|||||
T Consensus 82 ~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~----------------------~~~~~~~~~l~~l~~~G~ir~iGvSn 139 (275)
T PRK11565 82 HKRPREALEESLKKLQLDYVDLYLMHWPVPAI----------------------DHYVEAWKGMIELQKEGLIKSIGVCN 139 (275)
T ss_pred hHHHHHHHHHHHHHhCCCceEEEEecCCCCCc----------------------CcHHHHHHHHHHHHHcCCeeEEeecc
Confidence 89999999999999999999999999986431 12568999999999999999999999
Q ss_pred --HHHHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCccc
Q 027753 162 --NFVCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQFF 210 (219)
Q Consensus 162 --~~~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~~ 210 (219)
++++.+++.. ++|.++|.+++++.+ ..+++++|+++||.+++|||+.
T Consensus 140 ~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~--~~~~~~~~~~~~i~~~a~spl~ 190 (275)
T PRK11565 140 FQIHHLQRLIDETGVTPVINQIELHPLMQ--QRQLHAWNATHKIQTESWSPLA 190 (275)
T ss_pred CCHHHHHHHHHhCCCCceeeeeecCCccc--hHHHHHHHHHCCCEEEEEccCC
Confidence 8888888765 679999999998875 4679999999999999999985
No 6
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.3e-41 Score=290.26 Aligned_cols=183 Identities=25% Similarity=0.366 Sum_probs=159.5
Q ss_pred eeecCCCCccccceecccc-----CCchhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcEEE
Q 027753 2 AITLNNGFKMPIIGLGVWR-----MDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFI 73 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~-----~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~~I 73 (219)
+..|++|.+||+||||||. .+++++.++++.|+++|||+||||+.|| +|+.+|+||+.. + .+|++++|
T Consensus 2 r~lg~tg~~vs~lglGt~~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~---~-~~R~~~~i 77 (317)
T TIGR01293 2 RNLGKSGLRVSCLGLGTWVTFGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKK---G-WRRSSYVI 77 (317)
T ss_pred cccCCCCCeecceeecCCccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhc---C-CCcccEEE
Confidence 4568999999999999986 3668899999999999999999999998 799999999862 2 36999999
Q ss_pred EecCC-C--------CCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHH
Q 027753 74 TTKLW-N--------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHA 144 (219)
Q Consensus 74 ~tK~~-~--------~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (219)
+||++ . .+++.+++++++||++||+||||+|++|||+.. .++.++|++
T Consensus 78 aTK~~~~~~~~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~-----------------------~~~~e~~~a 134 (317)
T TIGR01293 78 TTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPN-----------------------TPMEETVRA 134 (317)
T ss_pred EeeeccCCCCCCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCC-----------------------CCHHHHHHH
Confidence 99973 2 257899999999999999999999999998653 126789999
Q ss_pred HHHHHHcCCccEEEecC--HHHHHHHHhc------CCceeeeeecCcchhh-hHHHHHHHHHhcCceEEecCcccc
Q 027753 145 MEDLVSMGLVRSIGIRL--NFVCVHCLVY------IIPAFLFKLSFPLAVI-VEKTLDQWQVDTSLKLMRGSQFFC 211 (219)
Q Consensus 145 l~~l~~~G~ir~iGvS~--~~~l~~~~~~------~~p~v~q~~~~~~~~~-~~~~l~~~~~~~gi~i~~~sp~~~ 211 (219)
|++|+++|+||+||+|| .+++.++... ++|+++|..+|++.+. .+..++++|+++||++++|||+++
T Consensus 135 L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~ 210 (317)
T TIGR01293 135 MTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLAC 210 (317)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccc
Confidence 99999999999999999 7777665432 5788999999999865 477899999999999999999953
No 7
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.1e-41 Score=284.76 Aligned_cols=184 Identities=26% Similarity=0.308 Sum_probs=164.4
Q ss_pred eecCCCCccccceeccc-------cCCchhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcEE
Q 027753 3 ITLNNGFKMPIIGLGVW-------RMDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLF 72 (219)
Q Consensus 3 ~~~~~g~~vs~lglG~~-------~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~~ 72 (219)
-.|++|++||++|||+| +.+++++.+++++|+++|+|+||||++|| ||..+|++|+++ + .+|++++
T Consensus 16 ~lg~~gl~Vs~lglG~m~~~~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~---~-~~R~~vv 91 (336)
T KOG1575|consen 16 KLGNSGLKVSPLGLGCMGWTTFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSR---G-WRRDKVV 91 (336)
T ss_pred eccCCCceecceeecceeeeccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhc---C-CcCCcEE
Confidence 46788999999999983 23789999999999999999999999999 799999999995 3 6899999
Q ss_pred EEecCCCC---------CchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHH
Q 027753 73 ITTKLWNS---------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWH 143 (219)
Q Consensus 73 I~tK~~~~---------~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (219)
|+||++.. +...++..++.|+++||++|||+|++||+|.. .+++++++
T Consensus 92 iaTK~~~~~~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~-----------------------~piee~m~ 148 (336)
T KOG1575|consen 92 IATKFGFDYGGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPM-----------------------VPIEETMR 148 (336)
T ss_pred EEEEEeccCCCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCC-----------------------CCHHHHHH
Confidence 99998322 46789999999999999999999999997765 34899999
Q ss_pred HHHHHHHcCCccEEEecC--HHHHHHHHhc--CCceeeeeecCcchhh-hHHHHHHHHHhcCceEEecCccccee
Q 027753 144 AMEDLVSMGLVRSIGIRL--NFVCVHCLVY--IIPAFLFKLSFPLAVI-VEKTLDQWQVDTSLKLMRGSQFFCLV 213 (219)
Q Consensus 144 ~l~~l~~~G~ir~iGvS~--~~~l~~~~~~--~~p~v~q~~~~~~~~~-~~~~l~~~~~~~gi~i~~~sp~~~~~ 213 (219)
+|.+++++|+||+||+|+ .+++.++... ++++++|++||+++|. .++++++.|++.||++++|||+++.+
T Consensus 149 aL~~lve~Gki~yiGlSe~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~ 223 (336)
T KOG1575|consen 149 ALTDLVEQGKIRYWGLSEWSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGL 223 (336)
T ss_pred HHHHHHhcCceEEEEeccCCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccce
Confidence 999999999999999999 9999999888 5599999999999977 56779999999999999999986544
No 8
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=3.9e-41 Score=290.58 Aligned_cols=199 Identities=27% Similarity=0.338 Sum_probs=161.0
Q ss_pred eeecCCCCccccceeccccC----CchhHHHHHHHHHHhCCceeecCcccC----------CHHHHHHHHHHHhhcCCCC
Q 027753 2 AITLNNGFKMPIIGLGVWRM----DESNIRDLIINAIKIGYRHIDCAADYR----------NEAEVGEALAEAFSTGLVK 67 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~~----~~~~~~~~l~~A~~~Gi~~~Dta~~Yg----------~e~~vg~al~~~~~~~~~~ 67 (219)
+..|++|++||.||||||++ +++++.++++.|++.|||+||||+.|| +|..+|++|++. + .
T Consensus 4 r~lg~t~~~vs~iglGt~~~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~---~--~ 78 (346)
T PRK10625 4 HRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR---G--S 78 (346)
T ss_pred eecCCCCCccccEeEeccccCCCCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc---C--C
Confidence 56789999999999999986 467899999999999999999999996 899999999863 3 6
Q ss_pred CCcEEEEecCCC--------------CCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCccccc
Q 027753 68 REDLFITTKLWN--------------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEID 133 (219)
Q Consensus 68 R~~~~I~tK~~~--------------~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~ 133 (219)
|++++|+||++. .+++.+++++++||++||+||||+|++|||+.... .+|........ ..
T Consensus 79 R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~-~~~~~~~~~~~-----~~ 152 (346)
T PRK10625 79 REKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTN-CFGKLGYSWTD-----SA 152 (346)
T ss_pred cceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccc-ccccccccccc-----cc
Confidence 999999999852 25789999999999999999999999999965210 00000000000 01
Q ss_pred ccccHHHHHHHHHHHHHcCCccEEEecC--HHHHHHHHhc------CCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 134 TTISLETTWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY------IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 134 ~~~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~------~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
+..++.++|++|++|+++|+||+||+|| .+++.+++.. ..+.++|.+|+++++..+.+++++|+++||.+++
T Consensus 153 ~~~~~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via 232 (346)
T PRK10625 153 PAVSLLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLA 232 (346)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEE
Confidence 1234789999999999999999999999 7777665542 3467889999998876677899999999999999
Q ss_pred cCcccc
Q 027753 206 GSQFFC 211 (219)
Q Consensus 206 ~sp~~~ 211 (219)
|||+.+
T Consensus 233 ~spL~~ 238 (346)
T PRK10625 233 YSCLAF 238 (346)
T ss_pred eccccC
Confidence 999843
No 9
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=7e-41 Score=281.34 Aligned_cols=184 Identities=31% Similarity=0.445 Sum_probs=165.3
Q ss_pred eeecCCCCccccceeccccCC-----chhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcEEE
Q 027753 2 AITLNNGFKMPIIGLGVWRMD-----ESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFI 73 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~~~-----~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~~I 73 (219)
+..+++|.+||+||||+|.+. .+++.++++.|++.|||+||||+.|| +|+.+|++|++. + .|++++|
T Consensus 2 r~lg~tg~~vs~lg~G~~~~~~~~~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~---~--~R~~~~i 76 (285)
T cd06660 2 RTLGKTGLKVSRLGLGTWQLGGGYVDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKER---G--PREEVFI 76 (285)
T ss_pred cccCCCCceecCcceeccccCCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhcc---C--CcCcEEE
Confidence 456779999999999999874 37899999999999999999999998 899999999984 1 4999999
Q ss_pred EecCCCC-------CchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHH
Q 027753 74 TTKLWNS-------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAME 146 (219)
Q Consensus 74 ~tK~~~~-------~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 146 (219)
+||++.. +++.+++++++||++||+||||+|++|||+.... ...++|++|+
T Consensus 77 ~tK~~~~~~~~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~----------------------~~~~~~~~l~ 134 (285)
T cd06660 77 ATKVGPRPGDGRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTP----------------------DIEETLRALE 134 (285)
T ss_pred EeeecCCCCCCCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCC----------------------CHHHHHHHHH
Confidence 9999755 6899999999999999999999999999875411 2578999999
Q ss_pred HHHHcCCccEEEecC--HHHHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCcccce
Q 027753 147 DLVSMGLVRSIGIRL--NFVCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQFFCL 212 (219)
Q Consensus 147 ~l~~~G~ir~iGvS~--~~~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~~~~ 212 (219)
+++++|+||+||||| ++.+.++++. .+|+++|+++|++++..+.+++++|+++||++++|+||.+.
T Consensus 135 ~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g 204 (285)
T cd06660 135 ELVKEGKIRAIGVSNFSAEQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGG 204 (285)
T ss_pred HHHHcCCccEEEeeCCCHHHHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCc
Confidence 999999999999999 8899999888 89999999999998766668999999999999999999543
No 10
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=9.2e-41 Score=288.15 Aligned_cols=185 Identities=22% Similarity=0.275 Sum_probs=157.3
Q ss_pred eeecCCCCccccceecccc-C----CchhHHHHHHHHHHhCCceeecCcccC-----CHHHHHHHHHHHhhcCCCCCCcE
Q 027753 2 AITLNNGFKMPIIGLGVWR-M----DESNIRDLIINAIKIGYRHIDCAADYR-----NEAEVGEALAEAFSTGLVKREDL 71 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~-~----~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-----~e~~vg~al~~~~~~~~~~R~~~ 71 (219)
+..|++|++||+||||||+ + +.+++.++|+.|++.|||+||||+.|| +|+.+|++|++. ...+|+++
T Consensus 16 r~lg~tg~~vs~lglG~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~---~~~~Rd~~ 92 (346)
T PRK09912 16 RYCGKSGLRLPALSLGLWHNFGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLRED---FAAYRDEL 92 (346)
T ss_pred eecCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhc---ccCCCCeE
Confidence 4578999999999999996 3 346779999999999999999999998 599999999862 11269999
Q ss_pred EEEecCC----C------CCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHH
Q 027753 72 FITTKLW----N------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETT 141 (219)
Q Consensus 72 ~I~tK~~----~------~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (219)
+|+||++ + .+++.+++++++||++||+||||+|++|||+.. .+++++
T Consensus 93 ~I~TK~g~~~~~~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~-----------------------~~~~e~ 149 (346)
T PRK09912 93 IISTKAGYDMWPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDEN-----------------------TPMEET 149 (346)
T ss_pred EEEEEecccCCCCcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCC-----------------------CCHHHH
Confidence 9999963 2 247889999999999999999999999998643 226789
Q ss_pred HHHHHHHHHcCCccEEEecC--HHHHHHHHhc-----CCceeeeeecCcchhhhH-HHHHHHHHhcCceEEecCcccce
Q 027753 142 WHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY-----IIPAFLFKLSFPLAVIVE-KTLDQWQVDTSLKLMRGSQFFCL 212 (219)
Q Consensus 142 ~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~-----~~p~v~q~~~~~~~~~~~-~~l~~~~~~~gi~i~~~sp~~~~ 212 (219)
|++|++|+++|+||+||||| +++++++.+. .++.++|.+||++++..+ .+++++|+++||++++||||.+.
T Consensus 150 ~~al~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G 228 (346)
T PRK09912 150 ASALAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQG 228 (346)
T ss_pred HHHHHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCc
Confidence 99999999999999999999 7777655442 577899999999986544 57999999999999999999543
No 11
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.2e-39 Score=277.94 Aligned_cols=185 Identities=22% Similarity=0.247 Sum_probs=153.0
Q ss_pred eeecCCCCccccceeccccC-------CchhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcE
Q 027753 2 AITLNNGFKMPIIGLGVWRM-------DESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDL 71 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~~-------~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~ 71 (219)
+..|+||++||.||||||++ +++++.++++.|++.|||+||||+.|| +|+.+|++|++. + ++|+++
T Consensus 2 r~lg~t~~~vs~lglG~~~~g~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~---~-~~R~~v 77 (314)
T PLN02587 2 RELGSTGLKVSSVGFGASPLGSVFGPVSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKAL---G-IPREKY 77 (314)
T ss_pred CcCCCCCCcccCcccccccccCCCCCCCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhC---C-CCcceE
Confidence 56789999999999999865 467889999999999999999999997 599999999873 2 479999
Q ss_pred EEEecCCC------CCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHH
Q 027753 72 FITTKLWN------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAM 145 (219)
Q Consensus 72 ~I~tK~~~------~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 145 (219)
+|+||++. .+++.+++++++||++||+||||+|++|||+.. +....+.++|++|
T Consensus 78 ~I~TK~~~~~~~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~--------------------~~~~~~~~~~~~l 137 (314)
T PLN02587 78 VVSTKCGRYGEGFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFG--------------------SLDQIVNETIPAL 137 (314)
T ss_pred EEEeccccCCCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCc--------------------chhhhHHHHHHHH
Confidence 99999863 367899999999999999999999999998632 1112356899999
Q ss_pred HHHHHcCCccEEEecC--HHHHHHHHhc-----CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCcccc
Q 027753 146 EDLVSMGLVRSIGIRL--NFVCVHCLVY-----IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQFFC 211 (219)
Q Consensus 146 ~~l~~~G~ir~iGvS~--~~~l~~~~~~-----~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~~~ 211 (219)
++|+++|+||+||+|| ++++..+++. .....+|..++..++. ..+++++|+++||++++|+|+.+
T Consensus 138 ~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ll~~~~~~gi~v~a~spl~~ 209 (314)
T PLN02587 138 QKLKESGKVRFIGITGLPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSS-LEDLLPYLKSKGVGVISASPLAM 209 (314)
T ss_pred HHHHHCCCeEEEEecCCCHHHHHHHHHhhhcCCCCeEEeccccCcchhh-HHHHHHHHHHcCceEEEechhhc
Confidence 9999999999999999 7776666543 1223346666665542 35899999999999999999843
No 12
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=4.7e-39 Score=271.42 Aligned_cols=184 Identities=20% Similarity=0.207 Sum_probs=156.6
Q ss_pred eeecCCCCccccceeccccCC----------chhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCC
Q 027753 2 AITLNNGFKMPIIGLGVWRMD----------ESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKR 68 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~~~----------~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R 68 (219)
++.++ |.+||+||||||+++ ++++.++++.|++.|||+||||+.|| +|+.+|++++. .|
T Consensus 9 ~~~l~-g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-------~R 80 (290)
T PRK10376 9 TFTLG-GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-------YP 80 (290)
T ss_pred ceecC-CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-------CC
Confidence 45666 999999999999763 46789999999999999999999998 48899999964 59
Q ss_pred CcEEEEecCCC-----------CCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCccccccccc
Q 027753 69 EDLFITTKLWN-----------SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTIS 137 (219)
Q Consensus 69 ~~~~I~tK~~~-----------~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (219)
++++|+||+.. .+++.+++++++||++||+||||+|++||+... ++ +....
T Consensus 81 ~~~~i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~--------h~----------p~~~~ 142 (290)
T PRK10376 81 DDLTIVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDG--------HG----------PAEGS 142 (290)
T ss_pred CeEEEEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCC--------CC----------CCCCC
Confidence 99999999731 257899999999999999999999999996321 00 11123
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC--HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCcccce
Q 027753 138 LETTWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQFFCL 212 (219)
Q Consensus 138 ~~~~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~~~~ 212 (219)
+.++|++|++|+++|+||+||||| .+++.++++...+.++|.++|++++. ..+++++|+++||++++|+|++++
T Consensus 143 ~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~~~~~~q~~~~~~~~~-~~~~~~~~~~~gi~v~a~~pL~g~ 218 (290)
T PRK10376 143 IEEPLTVLAELQRQGLVRHIGLSNVTPTQVAEARKIAEIVCVQNHYNLAHRA-DDALIDALARDGIAYVPFFPLGGF 218 (290)
T ss_pred HHHHHHHHHHHHHCCceeEEEecCCCHHHHHHHHhhCCeEEEecccCCCcCC-hHHHHHHHHHcCCEEEEeecCCCC
Confidence 678999999999999999999999 88888888777788999999998754 467999999999999999999754
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=4.2e-39 Score=271.73 Aligned_cols=179 Identities=18% Similarity=0.205 Sum_probs=152.3
Q ss_pred CCccccceeccccCC--------------chhHHHHHHHHHHhCCceeecCcccC-CHHHHHHHHHHHhhcCCCCCCcEE
Q 027753 8 GFKMPIIGLGVWRMD--------------ESNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAFSTGLVKREDLF 72 (219)
Q Consensus 8 g~~vs~lglG~~~~~--------------~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~vg~al~~~~~~~~~~R~~~~ 72 (219)
+.+||+||||||+++ ++++.++++.|++.|||+||||+.|| +|+.+|++|+. . .|.+++
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~SE~~lG~al~~----~--~~~~~~ 75 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGRAETVLGQLIPR----P--VPFRVT 75 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhhHHHHHhhhhcc----C--CceEee
Confidence 578999999998653 47789999999999999999999999 69999999975 1 356788
Q ss_pred EEecCCCCCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcC
Q 027753 73 ITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMG 152 (219)
Q Consensus 73 I~tK~~~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 152 (219)
|+||....+++.+++++++||++||+||||+|++|||+... .+ ...++|++|++|+++|
T Consensus 76 i~tk~~~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~-------------------~~--~~~~~~~~l~~l~~~G 134 (292)
T PRK14863 76 LSTVRADRGPDFVEAEARASLRRMGVERADAILVHSPTELF-------------------GP--HGAALWERLQALKDQG 134 (292)
T ss_pred cccccccccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhc-------------------Cc--chHHHHHHHHHHHHcC
Confidence 99986555789999999999999999999999999986420 10 1256899999999999
Q ss_pred CccEEEecC--HHHHHHHHhcCCceeeeeecCcchhhhH-HHHHHHHHhcCceEEecCcc-ccee
Q 027753 153 LVRSIGIRL--NFVCVHCLVYIIPAFLFKLSFPLAVIVE-KTLDQWQVDTSLKLMRGSQF-FCLV 213 (219)
Q Consensus 153 ~ir~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~~~~~-~~l~~~~~~~gi~i~~~sp~-~~~~ 213 (219)
+||+||||| +.++..+....+|+++|.++|++++..+ .+++++|+++||.+++|+|| ++++
T Consensus 135 kir~iGvSn~~~~~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L 199 (292)
T PRK14863 135 LFAKIGVSAHASDDPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLL 199 (292)
T ss_pred CcceEeeeccCHHHHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccc
Confidence 999999999 7788777666889999999999986543 46999999999999999999 4443
No 14
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=4.7e-38 Score=263.93 Aligned_cols=173 Identities=29% Similarity=0.456 Sum_probs=150.7
Q ss_pred cceeccccC-----CchhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcEEEEecC-------
Q 027753 13 IIGLGVWRM-----DESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTKL------- 77 (219)
Q Consensus 13 ~lglG~~~~-----~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~~I~tK~------- 77 (219)
+||||||++ +++++.++++.|++.|||+||||+.|| +|+.+|++|++ ...+|++++|+||+
T Consensus 1 ~l~lG~~~~~~~~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~----~~~~r~~~~i~tK~~~~~~~~ 76 (283)
T PF00248_consen 1 PLGLGTWRLGGERVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRK----SRVPRDDIFISTKVYGDGKPE 76 (283)
T ss_dssp SBEEECTTBTTTTSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHH----TSSTGGGSEEEEEEESSSSTG
T ss_pred CEEEEccccCCCCCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccc----ccccccccccccccccccccc
Confidence 589999854 789999999999999999999999993 79999999998 33699999999999
Q ss_pred CCCCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEE
Q 027753 78 WNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSI 157 (219)
Q Consensus 78 ~~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~i 157 (219)
...+++.+++++++||++||+||||+|++|||+.... ...++|++|++|+++|+||+|
T Consensus 77 ~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~----------------------~~~~~~~~l~~l~~~G~ir~i 134 (283)
T PF00248_consen 77 PDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSED----------------------ALEEVWEALEELKKEGKIRHI 134 (283)
T ss_dssp GGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSS----------------------HHHHHHHHHHHHHHTTSEEEE
T ss_pred ccccccccccccccccccccccchhcccccccccccc----------------------ccchhhhhhhhcccccccccc
Confidence 4448899999999999999999999999999976521 368899999999999999999
Q ss_pred EecC--HHHHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCcccc
Q 027753 158 GIRL--NFVCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQFFC 211 (219)
Q Consensus 158 GvS~--~~~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~~~ 211 (219)
|||| ++.+..+... ++|+++|.+++++++...++++++|+++||++++|+||.+
T Consensus 135 Gvs~~~~~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~ 192 (283)
T PF00248_consen 135 GVSNFSPEQLEAALKIGSIPPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAG 192 (283)
T ss_dssp EEES--HHHHHHHHTCTSS-ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGG
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999 8888888444 8999999999999777889999999999999999999954
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=3.4e-37 Score=246.22 Aligned_cols=188 Identities=27% Similarity=0.295 Sum_probs=161.9
Q ss_pred eeec-CCCCccccceeccccC-----CchhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcEE
Q 027753 2 AITL-NNGFKMPIIGLGVWRM-----DESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLF 72 (219)
Q Consensus 2 ~~~~-~~g~~vs~lglG~~~~-----~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~~ 72 (219)
++.+ +.|+++|++.+|.|++ ++.+....+..|++.||++||-|+.|| +|+++|+||+-. +--|+++.
T Consensus 3 rI~l~~~~~e~Sriv~G~wRl~d~~~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~----p~lRekie 78 (298)
T COG4989 3 RITLAPDGLEFSRIVLGYWRLNDWNMSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLA----PGLREKIE 78 (298)
T ss_pred eEEecCCCccHHHHHHHHHhhhhccCCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcC----hhhhhheE
Confidence 4444 4899999999999877 557889999999999999999999999 599999999862 33799999
Q ss_pred EEecCC--------------CCCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccH
Q 027753 73 ITTKLW--------------NSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISL 138 (219)
Q Consensus 73 I~tK~~--------------~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (219)
|+||++ ..+.++|..++++||++|++||+|++++|.||+. .+ -
T Consensus 79 ivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpL-------------------md----~ 135 (298)
T COG4989 79 IVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPL-------------------MD----A 135 (298)
T ss_pred eeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCccc-------------------CC----H
Confidence 999992 2378999999999999999999999999999887 33 5
Q ss_pred HHHHHHHHHHHHcCCccEEEecC--HHHHHHHHhc--CCceeeeeecCcch-hhhHHHHHHHHHhcCceEEecCccccee
Q 027753 139 ETTWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY--IIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQFFCLV 213 (219)
Q Consensus 139 ~~~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~--~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp~~~~~ 213 (219)
+++.+|+..|++.||||++|||| +.+++-+-+. .+.+.||++.+++. ....++.+++|+.+.|.+++||||++.-
T Consensus 136 eeVAeAf~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~ 215 (298)
T COG4989 136 EEVAEAFTHLHKSGKVRHFGVSNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGG 215 (298)
T ss_pred HHHHHHHHHHHhcCCeeeeecCCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCc
Confidence 78999999999999999999999 7776654444 66789999999987 4456889999999999999999996654
Q ss_pred ecc
Q 027753 214 EFN 216 (219)
Q Consensus 214 ~~~ 216 (219)
-|+
T Consensus 216 ~F~ 218 (298)
T COG4989 216 LFL 218 (298)
T ss_pred ccc
Confidence 443
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=8.2e-34 Score=237.93 Aligned_cols=183 Identities=23% Similarity=0.256 Sum_probs=158.0
Q ss_pred eeecCCCCccccceeccccC--------CchhHHHHHHHHHHhCCceeecCccc--C-CHHHHHHHHHHHhhcCCCCCCc
Q 027753 2 AITLNNGFKMPIIGLGVWRM--------DESNIRDLIINAIKIGYRHIDCAADY--R-NEAEVGEALAEAFSTGLVKRED 70 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~Dta~~Y--g-~e~~vg~al~~~~~~~~~~R~~ 70 (219)
+-.++||.++|.+|||+|++ +.+.+.+++++|++.|||+||||..| | +|..+|+||++. .|++
T Consensus 4 r~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~------~Rek 77 (391)
T COG1453 4 RKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDG------YREK 77 (391)
T ss_pred hhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhc------ccce
Confidence 44679999999999999877 45678999999999999999999999 7 799999999994 7999
Q ss_pred EEEEecCC--CC-CchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHH
Q 027753 71 LFITTKLW--NS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMED 147 (219)
Q Consensus 71 ~~I~tK~~--~~-~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 147 (219)
|+++||+. +. +++.+++-++++|++|++||+|+|++|..... . .+... -...++++++
T Consensus 78 v~LaTKlp~~~~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e-~-----------------~~k~~-~~g~~df~~k 138 (391)
T COG1453 78 VKLATKLPSWPVKDREDMERIFNEQLEKLGTDYIDYYLIHGLNTE-T-----------------WEKIE-RLGVFDFLEK 138 (391)
T ss_pred EEEEeecCCccccCHHHHHHHHHHHHHHhCCchhhhhhhccccHH-H-----------------HHHHH-ccChHHHHHH
Confidence 99999995 33 78999999999999999999999999997542 1 11111 1237899999
Q ss_pred HHHcCCccEEEecC---HHHHHHHHhcCCceeeeeecCcchhhhH--HHHHHHHHhcCceEEecCcc
Q 027753 148 LVSMGLVRSIGIRL---NFVCVHCLVYIIPAFLFKLSFPLAVIVE--KTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 148 l~~~G~ir~iGvS~---~~~l~~~~~~~~p~v~q~~~~~~~~~~~--~~l~~~~~~~gi~i~~~sp~ 209 (219)
+|++|+||++|+|. .+.+.++++..+.+++|++++-++.... .+.+++|.++|++|+..+|+
T Consensus 139 ak~eGkIr~~GFSfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~ 205 (391)
T COG1453 139 AKAEGKIRNAGFSFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPL 205 (391)
T ss_pred HHhcCcEEEeeecCCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeC
Confidence 99999999999998 9999999999778999999887764333 48899999999999999998
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=99.98 E-value=5e-32 Score=218.32 Aligned_cols=183 Identities=26% Similarity=0.285 Sum_probs=146.9
Q ss_pred eeecCCCCccccceeccccC-------CchhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcE
Q 027753 2 AITLNNGFKMPIIGLGVWRM-------DESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDL 71 (219)
Q Consensus 2 ~~~~~~g~~vs~lglG~~~~-------~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~ 71 (219)
+..|+||++||++|||+..+ +.++....+..|++.|||+|||||.|| +|..+|.++++ +||+.+
T Consensus 25 R~lg~tgl~VSk~~fGga~L~~~fgd~~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~------vPR~aY 98 (342)
T KOG1576|consen 25 RQLGSTGLRVSKLGFGGAALGQLFGDEDEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKD------VPREAY 98 (342)
T ss_pred hhcCCCcceeeeeeecchhhhhhcCCcchhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhh------CChhhe
Confidence 45789999999999999543 567777888889999999999999999 79999999998 599999
Q ss_pred EEEecC----------CCCCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHH
Q 027753 72 FITTKL----------WNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETT 141 (219)
Q Consensus 72 ~I~tK~----------~~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (219)
+|+||+ ++.+.+.+++++++||++|++||+|++++|..+.. .+.+..+.|+
T Consensus 99 yIaTKvgRy~ld~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefa-------------------p~ld~vl~Et 159 (342)
T KOG1576|consen 99 YIATKVGRYELDYANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFA-------------------PNLDIVLNET 159 (342)
T ss_pred eeeeeeeecccCccccccchHHHHHHHHHHHHHHhCCceeEEEEeeccccc-------------------ccccHHHHHH
Confidence 999999 44478999999999999999999999999997764 2233447899
Q ss_pred HHHHHHHHHcCCccEEEecC--HHHHHHHHhc--CCceeee--eecCcchhhhHHHHHHHHHhcCceEEecCccc
Q 027753 142 WHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY--IIPAFLF--KLSFPLAVIVEKTLDQWQVDTSLKLMRGSQFF 210 (219)
Q Consensus 142 ~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~--~~p~v~q--~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~~ 210 (219)
+.+|+++|++||+|+|||+. .+.+.++++. ....++- .+|...+ .---..+++.+.+|++|+.-++..
T Consensus 160 lp~Le~lk~~Gk~RfiGitgypldvl~~~ae~~~G~~dvvlsY~ry~l~d-~tLl~~~~~~~sk~vgVi~Asals 233 (342)
T KOG1576|consen 160 LPALEELKQEGKIRFIGITGYPLDVLTECAERGKGRLDVVLSYCRYTLND-NTLLRYLKRLKSKGVGVINASALS 233 (342)
T ss_pred HHHHHHHHhcCceeEeeecccchHHHHHHHhcCCCceeeehhhhhhcccc-HHHHHHHHHHHhcCceEEehhhHH
Confidence 99999999999999999999 6777777765 2222222 2222221 112334667779999999998863
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.41 E-value=6.5e-07 Score=72.12 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=66.4
Q ss_pred ccHHHHHHHHHHHHHcCCccEEEecC--HHHHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCc
Q 027753 136 ISLETTWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 136 ~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
..+.+.|+.||+++.+|+|..||||. ..+|+++++. +.|.++|++...+| ....+|..+|.+|+|.++..|.
T Consensus 153 e~lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cC-vvPpdLqafa~~hdiQLltHsD 228 (285)
T KOG3023|consen 153 ESLKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCC-VVPPDLQAFADRHDIQLLTHSD 228 (285)
T ss_pred HHHHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccc-cCCHHHHHHhhhcceeeeecCC
Confidence 35788999999999999999999999 9999999988 99999999999888 5678999999999999999876
No 19
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=86.54 E-value=11 Score=33.70 Aligned_cols=99 Identities=20% Similarity=0.160 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCCcccEEEe-ecCCCCCCCCCCCcCCcCCCCCc
Q 027753 51 AEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLV-HFPVATKHTGVGTTDSALDADGV 129 (219)
Q Consensus 51 ~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d~lDl~~l-h~p~~~~~~~~~~~~~~~~~~~~ 129 (219)
...-.++....+.| +.+-++=+..-+...+.+.+.+.+++.++ |+.|+|.+|.+ |-|..... ..-.++.
T Consensus 173 ~~~~~a~~~~~~~g-~~~in~DLIyglP~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~--------~~~~~~~ 242 (416)
T COG0635 173 EEAKEAVELARKAG-FTSINIDLIYGLPGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFA--------QRKIKGK 242 (416)
T ss_pred HHHHHHHHHHHHcC-CCcEEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhh--------hhcccCC
Confidence 33344444432223 34445555555666688888888888876 88999999988 44433211 0011111
Q ss_pred ccccccccHHHHHHHH-HHHHHcCCccEEEecC
Q 027753 130 LEIDTTISLETTWHAM-EDLVSMGLVRSIGIRL 161 (219)
Q Consensus 130 ~~~~~~~~~~~~~~~l-~~l~~~G~ir~iGvS~ 161 (219)
..++.....+.++.. +.|.+.|. +.+|+||
T Consensus 243 -~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisn 273 (416)
T COG0635 243 -ALPDEDEKADMYELVEELLEKAGY-RQYEISN 273 (416)
T ss_pred -CCcChHHHHHHHHHHHHHHHHCCC-cEEeech
Confidence 122222234455444 45566677 9999999
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=82.80 E-value=30 Score=29.80 Aligned_cols=148 Identities=11% Similarity=0.067 Sum_probs=84.0
Q ss_pred CchhHHHHHHHHHHhCCceeecCcccCC--------HHHHHHHHHHHhhcCCCCCCcEEEEecCC-CCCchHHHHHHHHH
Q 027753 22 DESNIRDLIINAIKIGYRHIDCAADYRN--------EAEVGEALAEAFSTGLVKREDLFITTKLW-NSDHGHVLEACKDS 92 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~--------e~~vg~al~~~~~~~~~~R~~~~I~tK~~-~~~~~~i~~~~~~s 92 (219)
+.++..+.++.+.+.|++.|-.=-..+. ...+=+++++. .-.++.|..... .++.+... +-
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~------~g~~~~l~vDaN~~~~~~~a~----~~ 208 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREA------VGPDVDLMVDANGRWDLAEAI----RL 208 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHh------hCCCCEEEEECCCCCCHHHHH----HH
Confidence 4566777888888999998864322221 12222344442 223455555552 22433322 33
Q ss_pred HHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC---HHHHHHHH
Q 027753 93 LKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL---NFVCVHCL 169 (219)
Q Consensus 93 l~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~---~~~l~~~~ 169 (219)
+++|. ..++.++..|-.. +.++.+.++++.-.+.-..--+ ++.+.+++
T Consensus 209 ~~~l~--~~~i~~iEqP~~~---------------------------~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i 259 (357)
T cd03316 209 ARALE--EYDLFWFEEPVPP---------------------------DDLEGLARLRQATSVPIAAGENLYTRWEFRDLL 259 (357)
T ss_pred HHHhC--ccCCCeEcCCCCc---------------------------cCHHHHHHHHHhCCCCEEeccccccHHHHHHHH
Confidence 33442 2345556655321 1456677787775555332222 78888888
Q ss_pred hcCCceeeeeecCcch-hhhHHHHHHHHHhcCceEEecCc
Q 027753 170 VYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 170 ~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
+....+++|.....+. -..-..+.+.|+++|+.++..+-
T Consensus 260 ~~~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 260 EAGAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 7655666776654432 23357889999999999887764
No 21
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=82.48 E-value=15 Score=31.12 Aligned_cols=99 Identities=10% Similarity=-0.041 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC-H
Q 027753 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL-N 162 (219)
Q Consensus 84 ~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~ 162 (219)
.-+..+-+.|.++|+++|++-..+.|..... +.+.++.+..+.+...++...+.- .
T Consensus 26 e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~-----------------------~~d~~e~~~~l~~~~~~~~~~l~~~~ 82 (287)
T PRK05692 26 ADKIALIDRLSAAGLSYIEVASFVSPKWVPQ-----------------------MADAAEVMAGIQRRPGVTYAALTPNL 82 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCcCcccccc-----------------------cccHHHHHHhhhccCCCeEEEEecCH
Confidence 3455677779999999999985555542211 123456666665544466666655 8
Q ss_pred HHHHHHHhc-CCceeeeeecCcchh------h------hHHHHHHHHHhcCceEEe
Q 027753 163 FVCVHCLVY-IIPAFLFKLSFPLAV------I------VEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 163 ~~l~~~~~~-~~p~v~q~~~~~~~~------~------~~~~l~~~~~~~gi~i~~ 205 (219)
..++.+++. ..-.-.....+.... . .-...+++++++|+.+.+
T Consensus 83 ~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 83 KGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred HHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 888888876 221112222332210 0 125689999999998864
No 22
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=79.75 E-value=37 Score=28.80 Aligned_cols=148 Identities=12% Similarity=0.006 Sum_probs=87.6
Q ss_pred CchhHHHHHHHHHHhCCceeecCcccC--CHHHHHHHHHHHhhcCCCCCCcEEEEecCC-CCCchHHHHHHHHHHHHhCC
Q 027753 22 DESNIRDLIINAIKIGYRHIDCAADYR--NEAEVGEALAEAFSTGLVKREDLFITTKLW-NSDHGHVLEACKDSLKKLQL 98 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~vg~al~~~~~~~~~~R~~~~I~tK~~-~~~~~~i~~~~~~sl~~Lg~ 98 (219)
+.++..+.+..+.+.|++.|..-..-. .+...=+++++. +. ++-|..+.. .++.+.. ..+-+.|+.+
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~~~d~~~v~~lr~~-----~g--~~~l~vD~n~~~~~~~A-~~~~~~l~~~-- 203 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDLEDDIERIRAIREA-----AP--DARLRVDANQGWTPEEA-VELLRELAEL-- 203 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCChhhHHHHHHHHHHh-----CC--CCeEEEeCCCCcCHHHH-HHHHHHHHhc--
Confidence 446667788888899999998632111 122223344442 23 556766663 2343332 2223334444
Q ss_pred CcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC---HHHHHHHHhcCCce
Q 027753 99 DYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL---NFVCVHCLVYIIPA 175 (219)
Q Consensus 99 d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~---~~~l~~~~~~~~p~ 175 (219)
++.++-.|-.. +-|+.+.+|++...+.-.+=-+ ...+.++++....+
T Consensus 204 ---~l~~iEeP~~~---------------------------~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d 253 (316)
T cd03319 204 ---GVELIEQPVPA---------------------------GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYD 253 (316)
T ss_pred ---CCCEEECCCCC---------------------------CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCC
Confidence 44444444221 1456677888877766333222 78888888876677
Q ss_pred eeeeecCcch-hhhHHHHHHHHHhcCceEEecCcc
Q 027753 176 FLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 176 v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp~ 209 (219)
++|.....+. -..-..+.++|+++|+.++..+-+
T Consensus 254 ~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~ 288 (316)
T cd03319 254 GINIKLMKTGGLTEALRIADLARAAGLKVMVGCMV 288 (316)
T ss_pred EEEEeccccCCHHHHHHHHHHHHHcCCCEEEECch
Confidence 7887755542 334578899999999999886543
No 23
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=77.99 E-value=20 Score=31.80 Aligned_cols=80 Identities=11% Similarity=0.056 Sum_probs=48.0
Q ss_pred CchhHHHHHHHHHHhCCceeecCcccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC---CchHHHHHHHHHHHHhCC
Q 027753 22 DESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS---DHGHVLEACKDSLKKLQL 98 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~---~~~~i~~~~~~sl~~Lg~ 98 (219)
+......++++|++.|++++|||.+.-....+.+..+ +..+.+..-++-. +.-.....+++-.+ .+
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~---------~Agit~v~~~G~dPGi~nv~a~~a~~~~~~--~i 145 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEEPPWKLDEEAK---------KAGITAVLGCGFDPGITNVLAAYAAKELFD--EI 145 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCchhhhhhHHHH---------HcCeEEEcccCcCcchHHHHHHHHHHHhhc--cc
Confidence 3445568999999999999999976644333333322 3345555555322 21222222222222 47
Q ss_pred CcccEEEeecCCCC
Q 027753 99 DYLDLYLVHFPVAT 112 (219)
Q Consensus 99 d~lDl~~lh~p~~~ 112 (219)
+++|+|..+-|+..
T Consensus 146 ~si~iy~g~~g~~~ 159 (389)
T COG1748 146 ESIDIYVGGLGEHG 159 (389)
T ss_pred cEEEEEEecCCCCC
Confidence 89999999988765
No 24
>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]
Probab=76.36 E-value=54 Score=29.41 Aligned_cols=65 Identities=8% Similarity=-0.066 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCC-ccEEEecC-----HHHHHHHHhc-CCc-eeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 141 TWHAMEDLVSMGL-VRSIGIRL-----NFVCVHCLVY-IIP-AFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 141 ~~~~l~~l~~~G~-ir~iGvS~-----~~~l~~~~~~-~~p-~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
+....+.++++|. ++++++.+ .+.++++++. ..- .+.-+++.+.....-+++...|++.||.++.
T Consensus 144 v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~ 216 (428)
T KOG1549|consen 144 VLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHV 216 (428)
T ss_pred hhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHHHHHHhCcCCcEEEe
Confidence 3445566888887 88888887 6666666655 222 2223333332233468899999999997765
No 25
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=74.78 E-value=61 Score=28.77 Aligned_cols=139 Identities=13% Similarity=0.107 Sum_probs=76.4
Q ss_pred CchhHHHHHHHHHHhCCceeecCcccC-------CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHH
Q 027753 22 DESNIRDLIINAIKIGYRHIDCAADYR-------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLK 94 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-------~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~ 94 (219)
...++.+++..|++.|- ...|+ +-+.|++.+.+-. .+++..++++|++-+ .++++-.+.
T Consensus 79 ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l-~~kl~a~DV~ltsGC--------~qAIe~~i~ 144 (447)
T KOG0259|consen 79 TSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDL-PNKLTADDVVLTSGC--------SQAIELAIS 144 (447)
T ss_pred CCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCC-CCccCcCceEEeccc--------hHHHHHHHH
Confidence 45678899999998873 24565 3445555543311 234678899998766 234444444
Q ss_pred HhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcC-CccEEEecC-------HHHHH
Q 027753 95 KLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMG-LVRSIGIRL-------NFVCV 166 (219)
Q Consensus 95 ~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~-------~~~l~ 166 (219)
.|---.-.++ +-+|... +.++.. +=.| .||++-+-- ..+++
T Consensus 145 ~LA~p~aNIL-lPrPGfp-------------------------~Y~~~a-----~~~~lEVR~ydlLPe~~weIDL~~ve 193 (447)
T KOG0259|consen 145 SLANPGANIL-LPRPGFP-------------------------LYDTRA-----IYSGLEVRYYDLLPEKDWEIDLDGVE 193 (447)
T ss_pred HhcCCCCcee-cCCCCCc-------------------------hHHHhh-----hhcCceeEeecccCcccceechHHHH
Confidence 4432233333 4444332 222221 1122 255555543 45555
Q ss_pred HHHhc-CCceeeeeecCcch----hhhHHHHHHHHHhcCceEEe
Q 027753 167 HCLVY-IIPAFLFKLSFPLA----VIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 167 ~~~~~-~~p~v~q~~~~~~~----~~~~~~l~~~~~~~gi~i~~ 205 (219)
.+++. ..-.++-.+.||+. ..--+.+++.|++.||.|++
T Consensus 194 al~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIa 237 (447)
T KOG0259|consen 194 ALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIA 237 (447)
T ss_pred HhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEe
Confidence 55555 32333444556653 22348899999999999987
No 26
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=74.00 E-value=45 Score=29.07 Aligned_cols=99 Identities=9% Similarity=-0.103 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC-
Q 027753 83 GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL- 161 (219)
Q Consensus 83 ~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~- 161 (219)
..-+-.+-+.|.++|+++|++-..-.|... +....-.+..++ +++...++..++.-
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~v--------------------Pqmad~~ev~~~---i~~~~~~~~~~l~~n 123 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKWV--------------------PQLADAKDVMAA---VRNLEGARFPVLTPN 123 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCcccc--------------------cccccHHHHHHH---HHhccCCceeEEcCC
Confidence 445667778899999999999754444322 111112334444 44433355556654
Q ss_pred HHHHHHHHhcCCcee-eeeecCcchh-------hh-----HHHHHHHHHhcCceEE
Q 027753 162 NFVCVHCLVYIIPAF-LFKLSFPLAV-------IV-----EKTLDQWQVDTSLKLM 204 (219)
Q Consensus 162 ~~~l~~~~~~~~p~v-~q~~~~~~~~-------~~-----~~~l~~~~~~~gi~i~ 204 (219)
.+.++.+++.....+ ..+..+.... .. -.+++++++++|+.+.
T Consensus 124 ~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~ 179 (347)
T PLN02746 124 LKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVR 179 (347)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence 888888888722222 2222222211 01 1578999999999885
No 27
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=72.89 E-value=36 Score=28.54 Aligned_cols=64 Identities=13% Similarity=0.039 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC--------------HHHHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCc
Q 027753 138 LETTWHAMEDLVSMGLVRSIGIRL--------------NFVCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSL 201 (219)
Q Consensus 138 ~~~~~~~l~~l~~~G~ir~iGvS~--------------~~~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi 201 (219)
+...++...+++++|++-.||=+. .+.+..+++. ....-+|.+........-+++-+++++.|+
T Consensus 106 m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHtes~~~~~~~~i~~~ak~~G~ 185 (285)
T COG1831 106 MRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHTESLDEETYEEIAEMAKEAGI 185 (285)
T ss_pred HHHHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCChHHHHHHHHHHHHhCC
Confidence 556677778999999888877554 2233333333 555667887666655556788999999987
No 28
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=71.64 E-value=76 Score=29.11 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=39.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCCcccEEEeecCCCC
Q 027753 47 YRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (219)
Q Consensus 47 Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~ 112 (219)
+|+++.+-+++++..++. +.+=++|.+-+ .++-|-.+++...+.++...++++.++.|...
T Consensus 67 ~G~~~~L~~aI~~~~~~~--~P~~I~V~sTC---~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~ 127 (511)
T TIGR01278 67 RGSQTRLVDTVRRVDDRF--KPDLIVVTPSC---TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYR 127 (511)
T ss_pred cchHHHHHHHHHHHHHhc--CCCEEEEeCCC---hHHHhccCHHHHHHHhccCCCcEEEecCCCcc
Confidence 678888888888865443 34445666655 23444455555555566556889999988754
No 29
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=71.41 E-value=47 Score=27.03 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcC-CccEEEecC--H
Q 027753 86 LEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMG-LVRSIGIRL--N 162 (219)
Q Consensus 86 ~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~--~ 162 (219)
...+-+.|..+|+++|++-..-.+.... ...+.++.++++++.+ .++...++. .
T Consensus 21 ~~~i~~~L~~~GV~~IEvg~~~~~~~~p-----------------------~~~~~~~~i~~l~~~~~~~~~~~l~~~~~ 77 (265)
T cd03174 21 KLEIAEALDEAGVDSIEVGSGASPKAVP-----------------------QMEDDWEVLRAIRKLVPNVKLQALVRNRE 77 (265)
T ss_pred HHHHHHHHHHcCCCEEEeccCcCccccc-----------------------cCCCHHHHHHHHHhccCCcEEEEEccCch
Confidence 3344455778899988887654432110 0234778888899988 567667665 6
Q ss_pred HHHHHHHhcCCceeeeeecCcc--------------hhhhHHHHHHHHHhcCceEEecC
Q 027753 163 FVCVHCLVYIIPAFLFKLSFPL--------------AVIVEKTLDQWQVDTSLKLMRGS 207 (219)
Q Consensus 163 ~~l~~~~~~~~p~v~q~~~~~~--------------~~~~~~~l~~~~~~~gi~i~~~s 207 (219)
+.++.+.+.. ...+++....- ....-...++++++.|+.+...-
T Consensus 78 ~~i~~a~~~g-~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 78 KGIERALEAG-VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred hhHHHHHhCC-cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6666666652 23333333222 01112456888899998775544
No 30
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=70.49 E-value=47 Score=27.70 Aligned_cols=84 Identities=15% Similarity=0.068 Sum_probs=57.4
Q ss_pred ccceeccccCCchh-HHHHHHHHHHhCCceeecCcccC---C----HHHHHHHHHHHhhcCCCCCCcEEEEecC--CCCC
Q 027753 12 PIIGLGVWRMDESN-IRDLIINAIKIGYRHIDCAADYR---N----EAEVGEALAEAFSTGLVKREDLFITTKL--WNSD 81 (219)
Q Consensus 12 s~lglG~~~~~~~~-~~~~l~~A~~~Gi~~~Dta~~Yg---~----e~~vg~al~~~~~~~~~~R~~~~I~tK~--~~~~ 81 (219)
-.+.+=+..+++++ ..++.+.|.++|..|+=|+..|+ . -+.+-+++++. + ...+ +-.|. +-++
T Consensus 134 lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~---~--~~~~--vgIKAsGGIrt 206 (257)
T PRK05283 134 LKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDM---G--VAKT--VGFKPAGGVRT 206 (257)
T ss_pred EEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhc---c--cCCC--eeEEccCCCCC
Confidence 34555566677774 88999999999999999999985 2 23333333321 1 1122 44454 4457
Q ss_pred chHHHHHHHHHHHHhCCCccc
Q 027753 82 HGHVLEACKDSLKKLQLDYLD 102 (219)
Q Consensus 82 ~~~i~~~~~~sl~~Lg~d~lD 102 (219)
.+....-++.--+.||.++++
T Consensus 207 ~~~A~~~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 207 AEDAAQYLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHHHHHHHhChhhcC
Confidence 888889999999999987765
No 31
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=69.79 E-value=64 Score=26.84 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=29.8
Q ss_pred ecCCCCccccceeccccCCchhHHHHHHHHHHhCCceeecCc
Q 027753 4 TLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAA 45 (219)
Q Consensus 4 ~~~~g~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~ 45 (219)
.++.|.+.+...|. .++..++++.-.+.|+..|+...
T Consensus 7 TLRDG~Q~~~~~~s-----~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 7 TLREGEQFANAFFD-----TEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCCCcCcCCCCCCC-----HHHHHHHHHHHHHcCCCEEEEEC
Confidence 46788888765554 58889999998999999999864
No 32
>PRK08609 hypothetical protein; Provisional
Probab=67.94 E-value=1.1e+02 Score=28.68 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=85.8
Q ss_pred hhHHHHHHHHHHhCCceeecCcccC--------CHHHHHHHH---HHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHH
Q 027753 24 SNIRDLIINAIKIGYRHIDCAADYR--------NEAEVGEAL---AEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDS 92 (219)
Q Consensus 24 ~~~~~~l~~A~~~Gi~~~Dta~~Yg--------~e~~vg~al---~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~s 92 (219)
....++++.|.+.|++.|=+++|.. +...+-..+ +.. .+. ...=++++-.-+.. .++....-.+..
T Consensus 349 ~sleemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l-~~~-~~~i~Il~GiEv~i-~~~g~~d~~~~~ 425 (570)
T PRK08609 349 FSIEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKAL-NEK-YPEIDILSGIEMDI-LPDGSLDYDDEV 425 (570)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHH-HHh-cCCCeEEEEEEEee-cCCcchhhcHHH
Confidence 3466799999999999998888862 122222222 211 001 11112222222211 111112222334
Q ss_pred HHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEec---------C-H
Q 027753 93 LKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIR---------L-N 162 (219)
Q Consensus 93 l~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS---------~-~ 162 (219)
|+. .||+ +.-+|++-.. +..+.++.+.++.+.|.+.-||=- . .
T Consensus 426 L~~--~D~v-I~SvH~~~~~------------------------~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~ 478 (570)
T PRK08609 426 LAE--LDYV-IAAIHSSFSQ------------------------SEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYD 478 (570)
T ss_pred HHh--hCEE-EEEeecCCCC------------------------CHHHHHHHHHHHhcCCCceEEECCCccccccCCCch
Confidence 443 4565 6667864211 134577888888888886655422 1 3
Q ss_pred HHHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCc
Q 027753 163 FVCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 163 ~~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
..++++++. ..-.++|++.+++.......+++.|.+.|+.++.-|.
T Consensus 479 ~d~~~i~~~a~~~G~~lEINa~~~r~~~~~~~~~~~~e~Gv~i~igSD 526 (570)
T PRK08609 479 VNIDQLIELAKETNTALELNANPNRLDLSAEHLKKAQEAGVKLAINTD 526 (570)
T ss_pred HHHHHHHHHHHHhCCEEEEcCCccccCccHHHHHHHHHcCCEEEEECC
Confidence 344444443 4457778887766434467899999999998876554
No 33
>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family. This model represents the histidinol phosphate phosphatase HisJ of Bacillus subtilis, and related proteins from a number of species within a larger family of phosphatases in the PHP hydrolase family. HisJ catalyzes the penultimate step of histidine biosynthesis but shows no homology to the functionally equivalent sequence in E. coli, a domain of the bifunctional HisB protein. Note, however, that many species have two members and that Clostridium perfringens, predicted not to make histidine, has five members of this family; this family is designated subfamily rather than equivalog to indicate that members may not all act as HisJ.
Probab=67.48 E-value=68 Score=26.29 Aligned_cols=85 Identities=21% Similarity=0.264 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHHhCCceeecCcccC------CH--------HHHHHHHHHHhhcCCCCCCcEEE--EecCCCCCchHHH
Q 027753 23 ESNIRDLIINAIKIGYRHIDCAADYR------NE--------AEVGEALAEAFSTGLVKREDLFI--TTKLWNSDHGHVL 86 (219)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg------~e--------~~vg~al~~~~~~~~~~R~~~~I--~tK~~~~~~~~i~ 86 (219)
.....+.++.|.+.|+..+=.+.+.. .. ..+.+.++...+-..-.++++-| ..-+... +. -.
T Consensus 14 ~~~~ee~v~~A~~~Gl~~i~~TdH~p~~~~~~~~~~~~~~~~~~~~~Y~~~i~~l~~~y~~~i~I~~GiE~~~~-~~-~~ 91 (253)
T TIGR01856 14 TDTLEEVVQEAIQLGFEEICFTEHAPLPFEYPEETALDKMAFSSLPEYFKEINRLKKEYADKLKILIGLEVDYI-PG-FE 91 (253)
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCcccCCCccccccchhHHHHHHHHHHHHHHHHHhhCCCeEEEEEEeccc-cc-hH
Confidence 35578899999999999886665521 11 11222222210000002333333 2222221 22 23
Q ss_pred HHHHHHHHHhCCCcccEEEeecCC
Q 027753 87 EACKDSLKKLQLDYLDLYLVHFPV 110 (219)
Q Consensus 87 ~~~~~sl~~Lg~d~lDl~~lh~p~ 110 (219)
..++..|++.+.|++ +.-+|+..
T Consensus 92 ~~~~~~l~~~~~D~v-igSvH~~~ 114 (253)
T TIGR01856 92 DFTKDFLDEYGLDFV-IGSVHFLG 114 (253)
T ss_pred HHHHHHHHHCCCCeE-EEEEEeec
Confidence 446667777788888 77889864
No 34
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=67.26 E-value=18 Score=30.77 Aligned_cols=100 Identities=14% Similarity=0.022 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC
Q 027753 82 HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL 161 (219)
Q Consensus 82 ~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 161 (219)
.+.+++++.+-+++.|+|.+=++..-.-+... +......+++++|++..+++.-. +--|.
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~-------------------~~~~~~~~t~~~l~~al~~~~~~-~~aS~ 190 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYI-------------------PVIPGVHDTLEALEKALDENDPE-ISASM 190 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S----------------------CCCCCSSHHHHHHHHHTT-TT-HHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCC-------------------CCCccccCCHHHHHHHhhcCCCc-CChHH
Confidence 36788999999999998866555544433221 11111234788888888877643 22222
Q ss_pred HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 162 NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 162 ~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
-....++...-|-+|-.+.+.. ....+.+.++++|+.+.+
T Consensus 191 -~YA~AAl~~g~~fvN~tP~~~a---~~P~l~ela~~~gvpi~G 230 (295)
T PF07994_consen 191 -LYAYAALEAGVPFVNGTPSNIA---DDPALVELAEEKGVPIAG 230 (295)
T ss_dssp -HHHHHHHHTTEEEEE-SSSTTT---TSHHHHHHHHHHTEEEEE
T ss_pred -HHHHHHHHCCCCeEeccCcccc---CCHHHHHHHHHcCCCeec
Confidence 2222233334455555554332 256888889999987654
No 35
>PRK08392 hypothetical protein; Provisional
Probab=65.68 E-value=68 Score=25.59 Aligned_cols=153 Identities=16% Similarity=0.072 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHhCCceeecCcccC--CHHHHHHHHHHHhhcCCCCCCcEEEE--ecCCCCCchHHHHHHHHHHHHhCCC
Q 027753 24 SNIRDLIINAIKIGYRHIDCAADYR--NEAEVGEALAEAFSTGLVKREDLFIT--TKLWNSDHGHVLEACKDSLKKLQLD 99 (219)
Q Consensus 24 ~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~vg~al~~~~~~~~~~R~~~~I~--tK~~~~~~~~i~~~~~~sl~~Lg~d 99 (219)
....+.+..|.+.|++.+=.+++.. ....+...+++..+-. .+.++.|. .-+.. .++. ....++.++. .|
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~--~~~~i~il~GiE~~~-~~~~-~~~~~~~~~~--~D 87 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWG--EESEIVVLAGIEANI-TPNG-VDITDDFAKK--LD 87 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHh--hccCceEEEeEEeee-cCCc-chhHHHHHhh--CC
Confidence 3467899999999999997777753 1112222222211101 11223222 22211 1121 2233334443 45
Q ss_pred cccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC----------HHHHHHHH
Q 027753 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL----------NFVCVHCL 169 (219)
Q Consensus 100 ~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~----------~~~l~~~~ 169 (219)
|+ +.-+|.+... + ...+.++.+.++.+.+.+.-+|=-. .+.+.+++
T Consensus 88 ~v-I~SvH~~~~~--------------------~---~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~ 143 (215)
T PRK08392 88 YV-IASVHEWFGR--------------------P---EHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEIL 143 (215)
T ss_pred EE-EEEeecCcCC--------------------c---HHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHH
Confidence 55 5567842111 0 1345677788888888755554311 23444444
Q ss_pred hc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCc
Q 027753 170 VY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 170 ~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
+. ..-.++.++... +.+...+++.|++.|+.++..|-
T Consensus 144 ~~~~~~g~~lEiNt~~--~~p~~~~l~~~~~~G~~~~igSD 182 (215)
T PRK08392 144 DLAEAYGKAFEISSRY--RVPDLEFIRECIKRGIKLTFASD 182 (215)
T ss_pred HHHHHhCCEEEEeCCC--CCCCHHHHHHHHHcCCEEEEeCC
Confidence 44 222333333211 12356789999999998877664
No 36
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=64.11 E-value=26 Score=31.96 Aligned_cols=102 Identities=19% Similarity=0.112 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCC---chHH----------HHHHHHHHHHhCCCcccEEEeecCCCCCCC
Q 027753 49 NEAEVGEALAEAFSTGLVKREDLFITTKLWNSD---HGHV----------LEACKDSLKKLQLDYLDLYLVHFPVATKHT 115 (219)
Q Consensus 49 ~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~---~~~i----------~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~ 115 (219)
.-..+..+-++.+.. --+-.+++++-+..-+ |... .-+-.+.-+|+.+.|+|.+. +
T Consensus 140 TyeT~~~aark~f~~--~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~-~-------- 208 (545)
T TIGR01228 140 TYETFAELARQHFGG--SLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRIDKRLETKYCDEQT-D-------- 208 (545)
T ss_pred HHHHHHHHHHHhcCC--CCceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHHHHHHhcCcceeEc-C--------
Confidence 344455555554422 2466788888774432 1100 11123344688889988761 1
Q ss_pred CCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC--HHHHHHHHhc-CCceee--eeecC
Q 027753 116 GVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY-IIPAFL--FKLSF 182 (219)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~-~~p~v~--q~~~~ 182 (219)
++++++...++.+++|+...||+-. .+.+.++++. +.|+++ |...|
T Consensus 209 ---------------------~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtDQTSaH 259 (545)
T TIGR01228 209 ---------------------SLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTDQTSAH 259 (545)
T ss_pred ---------------------CHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCCCCccc
Confidence 1678999999999999999999986 8888888887 666555 65543
No 37
>PRK07945 hypothetical protein; Provisional
Probab=64.07 E-value=96 Score=26.79 Aligned_cols=158 Identities=14% Similarity=0.032 Sum_probs=78.7
Q ss_pred chhHHHHHHHHHHhCCceeecCcccC--------CHHHHHHHHHHHhhcCCCCCCcEEEEecC-CCCCchHHHHHHHHHH
Q 027753 23 ESNIRDLIINAIKIGYRHIDCAADYR--------NEAEVGEALAEAFSTGLVKREDLFITTKL-WNSDHGHVLEACKDSL 93 (219)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg--------~e~~vg~al~~~~~~~~~~R~~~~I~tK~-~~~~~~~i~~~~~~sl 93 (219)
.....+.+..|.+.|+..+=.++|.. +...+-+.++...+-..-.++ +.|-.=+ ...-++.-....++.|
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~-I~Il~GiE~d~~~~g~~~~~~~~l 188 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAP-FRILTGIEVDILDDGSLDQEPELL 188 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCC-ceEEEEeEecccCCCCcchhHHHH
Confidence 45578999999999999987777742 111122222211000000122 3332222 0111111111222333
Q ss_pred HHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC------------
Q 027753 94 KKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL------------ 161 (219)
Q Consensus 94 ~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~------------ 161 (219)
+. .||+ +.-+|+.... + ..+..+.|.++.+.+.+.-+|=-.
T Consensus 189 ~~--~D~v-IgSvH~~~~~--------------------~----~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~ 241 (335)
T PRK07945 189 DR--LDVV-VASVHSKLRM--------------------D----AAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRP 241 (335)
T ss_pred Hh--CCEE-EEEeecCCCC--------------------C----HHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCC
Confidence 33 4565 5667874211 1 234557777778888877777321
Q ss_pred --HHHHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCc
Q 027753 162 --NFVCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 162 --~~~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
...+.++++. ..-..+.++...+.......+++.|++.|+.++..|-
T Consensus 242 ~~~~~~~~i~~a~~e~g~~lEINt~~~r~~P~~~il~~a~e~G~~vtigSD 292 (335)
T PRK07945 242 ESKFDAEAVFAACREHGTAVEINSRPERRDPPTRLLRLALDAGCLFSIDTD 292 (335)
T ss_pred hhhcCHHHHHHHHHHhCCEEEEeCCCCCCCChHHHHHHHHHcCCeEEecCC
Confidence 1112233322 2223334444444334567899999999999877665
No 38
>PLN02438 inositol-3-phosphate synthase
Probab=63.61 E-value=50 Score=30.20 Aligned_cols=96 Identities=8% Similarity=0.063 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCH
Q 027753 83 GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRLN 162 (219)
Q Consensus 83 ~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~ 162 (219)
+.+++++++-.++-|+|.+=+++..+-+.. .+......+++++|++..+++-- .|--|.
T Consensus 207 e~ir~DIr~Fk~~n~ld~vVVlwtAsTEr~-------------------~~~~~~~~~t~~~l~~ai~~~~~-eispS~- 265 (510)
T PLN02438 207 DQIRKDIREFKEKNKVDKVVVLWTANTERY-------------------SNVVVGLNDTMENLLASIEKDEA-EISPST- 265 (510)
T ss_pred HHHHHHHHHHHHHhCCCeEEEEECCCCCCC-------------------CcCCCcccCCHHHHHHHHhcCCC-cCChHH-
Confidence 567888888888888888766666554332 11111244688888888888764 344444
Q ss_pred HHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceE
Q 027753 163 FVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKL 203 (219)
Q Consensus 163 ~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i 203 (219)
-....++....|-||-.+.+.+ ...+.++++++|+.+
T Consensus 266 ~YA~AAl~eG~~fVNgsP~~t~----vP~~~elA~~~gvpi 302 (510)
T PLN02438 266 LYALACILEGVPFINGSPQNTF----VPGVIELAVKKNSLI 302 (510)
T ss_pred HHHHHHHHcCCCeEecCCcccc----ChhhHHHHHHcCCCE
Confidence 1122233334455554443322 234444444555443
No 39
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=63.32 E-value=78 Score=25.49 Aligned_cols=56 Identities=5% Similarity=-0.064 Sum_probs=36.9
Q ss_pred HHHHHHHcCC-ccEEEecC---HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhc-CceEE
Q 027753 144 AMEDLVSMGL-VRSIGIRL---NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDT-SLKLM 204 (219)
Q Consensus 144 ~l~~l~~~G~-ir~iGvS~---~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~-gi~i~ 204 (219)
...++.+.-. ++.+||.- .+.+.++++...+.++|.+-.. +.+.++..++. +++|+
T Consensus 42 ~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~~~~~l~~~~~~~v~ 102 (208)
T COG0135 42 QAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPEYIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHHHHHHHHhhcCCceE
Confidence 3344444443 88999996 8888888888889999998542 34444555544 34443
No 40
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=62.92 E-value=78 Score=25.37 Aligned_cols=70 Identities=6% Similarity=-0.080 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCccEEE-ecC--HHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcCceEEecCccc
Q 027753 141 TWHAMEDLVSMGLVRSIG-IRL--NFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQFF 210 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir~iG-vS~--~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp~~ 210 (219)
.++.+.+|.+...+.-.+ =|- ...+.++++.....+.|.....+. -..-..+.++|+++|+.++..+.+.
T Consensus 133 d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~ 206 (229)
T cd00308 133 DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLE 206 (229)
T ss_pred CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCC
Confidence 456677788877665222 221 666666766666677777655543 2335788999999999999988763
No 41
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=62.59 E-value=35 Score=28.19 Aligned_cols=77 Identities=16% Similarity=0.257 Sum_probs=49.2
Q ss_pred chhHHHHHHHHHHhCCceeecCcccC--CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC--------CchHHHHHHHHH
Q 027753 23 ESNIRDLIINAIKIGYRHIDCAADYR--NEAEVGEALAEAFSTGLVKREDLFITTKLWNS--------DHGHVLEACKDS 92 (219)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg--~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~--------~~~~i~~~~~~s 92 (219)
+....+.++.+-+.|++.++.+...- +...--++++.. .+..+.+.+-++.. +++...+.++.-
T Consensus 83 q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~------~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~d 156 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKA------KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRD 156 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHH------CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHH
T ss_pred cChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHH------HHCCCEEeecccCCCchhcccCCHHHHHHHHHHH
Confidence 34556788888899999999988765 566677778775 55558888877554 366777777777
Q ss_pred HHHhCCCcccEEEeecC
Q 027753 93 LKKLQLDYLDLYLVHFP 109 (219)
Q Consensus 93 l~~Lg~d~lDl~~lh~p 109 (219)
|+. | .|.+++-.-
T Consensus 157 LeA-G---A~~ViiEar 169 (244)
T PF02679_consen 157 LEA-G---ADKVIIEAR 169 (244)
T ss_dssp HHH-T---ECEEEE--T
T ss_pred HHC-C---CCEEEEeee
Confidence 764 4 566777653
No 42
>PRK05414 urocanate hydratase; Provisional
Probab=61.08 E-value=31 Score=31.58 Aligned_cols=102 Identities=21% Similarity=0.125 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCC---chHH----------HHHHHHHHHHhCCCcccEEEeecCCCCCCC
Q 027753 49 NEAEVGEALAEAFSTGLVKREDLFITTKLWNSD---HGHV----------LEACKDSLKKLQLDYLDLYLVHFPVATKHT 115 (219)
Q Consensus 49 ~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~---~~~i----------~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~ 115 (219)
.-..+..+-++.+. + --+-.+++++-++.-+ |... .-+-.+.-+|+.+.|+|.+. .
T Consensus 149 TyeT~~~a~rk~f~-g-~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~kR~~~gyld~~~-~-------- 217 (556)
T PRK05414 149 TYETFAEAARQHFG-G-DLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRIDKRLRTGYLDEKA-D-------- 217 (556)
T ss_pred HHHHHHHHHHHhcC-C-CCceeEEEEecCCccccccHHHHHhcCceEEEEEECHHHHHHHHhCCcceeEc-C--------
Confidence 33445555555432 2 2466788888874432 1000 11123344688889988761 1
Q ss_pred CCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC--HHHHHHHHhc-CCceee--eeecC
Q 027753 116 GVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY-IIPAFL--FKLSF 182 (219)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~-~~p~v~--q~~~~ 182 (219)
++++++...++.+++|+..+||+-. .+.+.++++. +.|+++ |.-.|
T Consensus 218 ---------------------~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 218 ---------------------DLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred ---------------------CHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCcccc
Confidence 1678999999999999999999986 8888888888 666555 65443
No 43
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=59.23 E-value=79 Score=25.96 Aligned_cols=60 Identities=7% Similarity=-0.050 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCccEEE---ecCHHHHHHHHhcC-Cceeeee-ecCcchhhhHHHHHHHHHhcCceE
Q 027753 143 HAMEDLVSMGLVRSIG---IRLNFVCVHCLVYI-IPAFLFK-LSFPLAVIVEKTLDQWQVDTSLKL 203 (219)
Q Consensus 143 ~~l~~l~~~G~ir~iG---vS~~~~l~~~~~~~-~p~v~q~-~~~~~~~~~~~~l~~~~~~~gi~i 203 (219)
+.+.++++.-.+.-|. +++++++.++++.. .-.|.-. .++. ....-.++.++|+++||.+
T Consensus 189 ~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~-~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 189 ELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY-REITIGEVKEYLAERGIPV 253 (254)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC-CCCCHHHHHHHHHHCCCcc
Confidence 3344444443444444 44488888888752 2222211 1111 1233578899999999864
No 44
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=59.12 E-value=1e+02 Score=25.37 Aligned_cols=148 Identities=14% Similarity=0.082 Sum_probs=84.4
Q ss_pred chhHHHHHHHHHHhCCceeecCcccCCHH--HHHHHHHHHhhcCCCCCCcEEEEecCC-CCCchHHHHHHHHHHHHhCCC
Q 027753 23 ESNIRDLIINAIKIGYRHIDCAADYRNEA--EVGEALAEAFSTGLVKREDLFITTKLW-NSDHGHVLEACKDSLKKLQLD 99 (219)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~--~vg~al~~~~~~~~~~R~~~~I~tK~~-~~~~~~i~~~~~~sl~~Lg~d 99 (219)
.++..+.++.+.+.|++.|-.=-.-..+. ..=+++++. -..++.|..... .++.+...+-+ +.|+.+
T Consensus 86 ~~~~~~~~~~~~~~G~~~~KiKvg~~~~~d~~~v~~vr~~------~g~~~~l~vDan~~~~~~~a~~~~-~~l~~~--- 155 (265)
T cd03315 86 PAEVAEEARRALEAGFRTFKLKVGRDPARDVAVVAALREA------VGDDAELRVDANRGWTPKQAIRAL-RALEDL--- 155 (265)
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCCHHHHHHHHHHHHHh------cCCCCEEEEeCCCCcCHHHHHHHH-HHHHhc---
Confidence 45566777778889999886532111122 222344442 223445544442 23433333222 233333
Q ss_pred cccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC---HHHHHHHHhcCCcee
Q 027753 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL---NFVCVHCLVYIIPAF 176 (219)
Q Consensus 100 ~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~---~~~l~~~~~~~~p~v 176 (219)
++.++..|-.. +.++.+.++++.-.+.-.+--+ ..++.++++.....+
T Consensus 156 --~i~~iEeP~~~---------------------------~d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~ 206 (265)
T cd03315 156 --GLDYVEQPLPA---------------------------DDLEGRAALARATDTPIMADESAFTPHDAFRELALGAADA 206 (265)
T ss_pred --CCCEEECCCCc---------------------------ccHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCE
Confidence 44455655321 1356667787776655333322 778888887766777
Q ss_pred eeeecCcch-hhhHHHHHHHHHhcCceEEecCcc
Q 027753 177 LFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 177 ~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp~ 209 (219)
+|.....+. -..-..+.+.|+++|+.++..+.+
T Consensus 207 v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~ 240 (265)
T cd03315 207 VNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMI 240 (265)
T ss_pred EEEecccccCHHHHHHHHHHHHHcCCcEEecCcc
Confidence 777755543 234578899999999999987654
No 45
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.82 E-value=31 Score=27.63 Aligned_cols=58 Identities=10% Similarity=-0.064 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCccEEEecC---HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 141 TWHAMEDLVSMGLVRSIGIRL---NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir~iGvS~---~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
..+.+++++++.-=-.||..+ .++++++++.. -|.-.+| ....+++++|+++||.++.
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aG----A~FivSP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAG----SRFIVSP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcC----CCEEECC---CCCHHHHHHHHHcCCCEeC
Confidence 556666776654335688887 89999888751 1222233 3377899999999998876
No 46
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=58.58 E-value=1.1e+02 Score=25.51 Aligned_cols=100 Identities=8% Similarity=-0.041 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC--
Q 027753 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL-- 161 (219)
Q Consensus 84 ~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-- 161 (219)
..+..+-+.|.++|+++|++-+......... +..... -.+.|+.+..+.+ +..+..+++.
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~-------------~~~~~~----~~~~~~~i~~~~~-~~~~~~~~~~~~ 81 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFK-------------GKSAFC----DDEFLRRLLGDSK-GNTKIAVMVDYG 81 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccC-------------CCccCC----CHHHHHHHHhhhc-cCCEEEEEECCC
Confidence 3445566679999999999987654321100 000000 1335555554443 2466666665
Q ss_pred ---HHHHHHHHhcCCceeeee--ecCcchhhhHHHHHHHHHhcCceEE
Q 027753 162 ---NFVCVHCLVYIIPAFLFK--LSFPLAVIVEKTLDQWQVDTSLKLM 204 (219)
Q Consensus 162 ---~~~l~~~~~~~~p~v~q~--~~~~~~~~~~~~l~~~~~~~gi~i~ 204 (219)
.+.+..+.+.. ...+-+ ..+.+ ..-...+++++++|+.+.
T Consensus 82 ~~~~~~l~~a~~~g-v~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~ 126 (266)
T cd07944 82 NDDIDLLEPASGSV-VDMIRVAFHKHEF--DEALPLIKAIKEKGYEVF 126 (266)
T ss_pred CCCHHHHHHHhcCC-cCEEEEecccccH--HHHHHHHHHHHHCCCeEE
Confidence 24444443331 122222 22222 224667888888887654
No 47
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=57.79 E-value=75 Score=24.94 Aligned_cols=70 Identities=11% Similarity=-0.035 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCccEEEecC---HHHHHHHHhc---CCceeee------------eecCcchhhhHHHHHHHHHhcC
Q 027753 139 ETTWHAMEDLVSMGLVRSIGIRL---NFVCVHCLVY---IIPAFLF------------KLSFPLAVIVEKTLDQWQVDTS 200 (219)
Q Consensus 139 ~~~~~~l~~l~~~G~ir~iGvS~---~~~l~~~~~~---~~p~v~q------------~~~~~~~~~~~~~l~~~~~~~g 200 (219)
.++.++|++|+++|. .+++++ ...+..++.. ..|.+.. +...++....-..++++|++++
T Consensus 18 ~~~~~al~~l~~~g~--~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~~~l~~~~i~~~~~~~i~~~~~~~~ 95 (254)
T PF08282_consen 18 PETIEALKELQEKGI--KLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKGKILYEKPIDSDDVKKILKYLKEHN 95 (254)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTTEEEEEESB-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcccce--EEEEEccCcccccccccccccchhhhcccccceeeecccccchhhheeccchhheeehhhhcc
Confidence 578999999999999 677777 6666666655 2232221 1223444445588999999999
Q ss_pred ceEEecCccc
Q 027753 201 LKLMRGSQFF 210 (219)
Q Consensus 201 i~i~~~sp~~ 210 (219)
+.+..+++-.
T Consensus 96 ~~~~~~~~~~ 105 (254)
T PF08282_consen 96 ISFFFYTDDD 105 (254)
T ss_dssp CEEEEEESSE
T ss_pred ccccccccee
Confidence 9999988753
No 48
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=57.39 E-value=98 Score=24.74 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=65.9
Q ss_pred ccCCchhHHHHHHHHHHhCCceeecCcccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCc--hHHHHHHHHHHHHh
Q 027753 19 WRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDH--GHVLEACKDSLKKL 96 (219)
Q Consensus 19 ~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~--~~i~~~~~~sl~~L 96 (219)
+..++++-.+++..+++.|..++|.--....+...-...... .+.++.++...+..++ +.+.+.+++.. .+
T Consensus 70 ~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~------~~~~iI~S~H~f~~tp~~~~l~~~~~~~~-~~ 142 (224)
T PF01487_consen 70 FQGSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARK------GGTKIILSYHDFEKTPSWEELIELLEEMQ-EL 142 (224)
T ss_dssp BSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHH------TTSEEEEEEEESS---THHHHHHHHHHHH-HT
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhh------CCCeEEEEeccCCCCCCHHHHHHHHHHHH-hc
Confidence 456778889999999999999999865422222211222221 5677888888655544 33555555444 67
Q ss_pred CCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC--HHHHHHHHhc
Q 027753 97 QLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY 171 (219)
Q Consensus 97 g~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~ 171 (219)
|.|.+=+..... . ..+....++...++++.-...-|+++. .-.+-+++..
T Consensus 143 gadivKia~~~~---~----------------------~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~ 194 (224)
T PF01487_consen 143 GADIVKIAVMAN---S----------------------PEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRILNP 194 (224)
T ss_dssp T-SEEEEEEE-S---S----------------------HHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHH
T ss_pred CCCeEEEEeccC---C----------------------HHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHh
Confidence 755444433321 1 011344566666666654566666665 4444444444
No 49
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=57.16 E-value=1e+02 Score=24.83 Aligned_cols=78 Identities=9% Similarity=0.074 Sum_probs=51.9
Q ss_pred eeccccCCchhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcEEEEecC--CCCCchHHHHHH
Q 027753 15 GLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTKL--WNSDHGHVLEAC 89 (219)
Q Consensus 15 glG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~~I~tK~--~~~~~~~i~~~~ 89 (219)
.+-+..+++++...+.+.+.++|..++=|+..|+ .-..--+.|++. .+.+ +-.|. +..+.+...+-+
T Consensus 123 IlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~------v~~~--v~IKaaGGirt~~~a~~~i 194 (211)
T TIGR00126 123 IIETGLLTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNT------VGDT--IGVKASGGVRTAEDAIAMI 194 (211)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHH------hccC--CeEEEeCCCCCHHHHHHHH
Confidence 3455557888889999999999999999998875 111111333332 1222 23333 344778888888
Q ss_pred HHHHHHhCCCc
Q 027753 90 KDSLKKLQLDY 100 (219)
Q Consensus 90 ~~sl~~Lg~d~ 100 (219)
+.--.|+|++.
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 88888998864
No 50
>PLN02389 biotin synthase
Probab=55.27 E-value=1.5e+02 Score=26.18 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=58.7
Q ss_pred CCchhHHHHHHHHHHhCCceeecCcc-c--CC----HHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHH
Q 027753 21 MDESNIRDLIINAIKIGYRHIDCAAD-Y--RN----EAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSL 93 (219)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~Dta~~-Y--g~----e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl 93 (219)
++.++..+.++.+.+.|++.|-.... . ++ -..+-+.++.. +...+.|+...+..+.+ .-+.|
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~i------k~~~l~i~~s~G~l~~E-----~l~~L 184 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEI------RGMGMEVCCTLGMLEKE-----QAAQL 184 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHH------hcCCcEEEECCCCCCHH-----HHHHH
Confidence 47788889999999999998853211 1 12 23566666664 22234455444433333 33345
Q ss_pred HHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCC
Q 027753 94 KKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL 153 (219)
Q Consensus 94 ~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 153 (219)
+..|+|.+- |..+.... ..+. ......+++.+++++.+++.|.
T Consensus 185 keAGld~~~----~~LeTs~~----------~y~~---i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 185 KEAGLTAYN----HNLDTSRE----------YYPN---VITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHcCCCEEE----eeecCChH----------HhCC---cCCCCCHHHHHHHHHHHHHcCC
Confidence 566877643 33221100 0000 1112357889999999999996
No 51
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=53.53 E-value=74 Score=22.18 Aligned_cols=60 Identities=15% Similarity=0.040 Sum_probs=43.8
Q ss_pred HHHHHHcCCccEEEecC-----HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 145 MEDLVSMGLVRSIGIRL-----NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 145 l~~l~~~G~ir~iGvS~-----~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
++++.+...+..+-|++ .+.+..+++...+.+...+... +...-+.|++.|+++|+.++.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~-~~~~~~~l~~~a~~~~~~~~V 118 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLAL-TLEEAEELVEAAKEKGVKVMV 118 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSSS-SHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCcC-CHHHHHHHHHHHHHhCCEEEE
Confidence 45566666888888888 6667777777667777776533 334568899999999988764
No 52
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=53.03 E-value=1.6e+02 Score=25.74 Aligned_cols=158 Identities=12% Similarity=0.058 Sum_probs=86.9
Q ss_pred cceeccc--cCCchhHHHHHHHHHHhCCceeecCcccCCHHH--HHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHH-
Q 027753 13 IIGLGVW--RMDESNIRDLIINAIKIGYRHIDCAADYRNEAE--VGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLE- 87 (219)
Q Consensus 13 ~lglG~~--~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~--vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~- 87 (219)
.+||..+ +...++-.+.++.|.+.|+..+-|+-.++++.. .-..+++.+... .+..+.+..-+-+. -+.+
T Consensus 3 ~~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~A--nklg~~vivDvnPs---il~~l 77 (360)
T COG3589 3 MLGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEA--NKLGLRVIVDVNPS---ILKEL 77 (360)
T ss_pred ceeEEeccCCCcchhHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHH--HhcCcEEEEEcCHH---HHhhc
Confidence 4566653 445567789999999999999999999985332 222223322222 55667666666333 1111
Q ss_pred ----HHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC-H
Q 027753 88 ----ACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL-N 162 (219)
Q Consensus 88 ----~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~ 162 (219)
.--..++.+|++- += .|-.. .-++..++-++++--.+-.|+ .
T Consensus 78 ~~S~~~l~~f~e~G~~g---lR--------------------------lD~gf----S~eei~~ms~~~lkieLN~S~it 124 (360)
T COG3589 78 NISLDNLSRFQELGVDG---LR--------------------------LDYGF----SGEEIAEMSKNPLKIELNASTIT 124 (360)
T ss_pred CCChHHHHHHHHhhhhh---ee--------------------------ecccC----CHHHHHHHhcCCeEEEEchhhhH
Confidence 1122333444321 10 11111 224445677777666777777 6
Q ss_pred HHHHHHHhcCCceeee-eecCcchhhhH--------HHHHHHHHhcCceEEecCcc
Q 027753 163 FVCVHCLVYIIPAFLF-KLSFPLAVIVE--------KTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 163 ~~l~~~~~~~~p~v~q-~~~~~~~~~~~--------~~l~~~~~~~gi~i~~~sp~ 209 (219)
+.+..++.. .+.+.+ ..+|.+.+... ...=++.+++|+.+.||-+-
T Consensus 125 ~~l~~l~~~-~an~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk~~~i~t~AFis~ 179 (360)
T COG3589 125 ELLDSLLAY-KANLENLEGCHNYYPRPYTGLSREHFKRKNEIFKEYNIKTAAFISS 179 (360)
T ss_pred HHHHHHHHh-ccchhhhhhcccccCCcccCccHHHHHHHHHHHHhcCCceEEEEec
Confidence 677777764 222222 22333322211 34456778899999988664
No 53
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=52.59 E-value=12 Score=27.75 Aligned_cols=23 Identities=4% Similarity=-0.106 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhcCceEEecCccc
Q 027753 188 VEKTLDQWQVDTSLKLMRGSQFF 210 (219)
Q Consensus 188 ~~~~l~~~~~~~gi~i~~~sp~~ 210 (219)
.-.++++.|+++||.+++|-.++
T Consensus 45 llge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 45 LLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred HHHHHHHHHHHCCCEEEEEEeee
Confidence 35788999999999999998764
No 54
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=51.54 E-value=66 Score=26.60 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=43.4
Q ss_pred CCCCccccceeccccC-----Cc----h----hHHHHHHHHHHhCCceeecCcc---c--CCHHH---HHHHHHHHhhcC
Q 027753 6 NNGFKMPIIGLGVWRM-----DE----S----NIRDLIINAIKIGYRHIDCAAD---Y--RNEAE---VGEALAEAFSTG 64 (219)
Q Consensus 6 ~~g~~vs~lglG~~~~-----~~----~----~~~~~l~~A~~~Gi~~~Dta~~---Y--g~e~~---vg~al~~~~~~~ 64 (219)
.+|..+|.++|.+-+- .+ + -..+++..|.+.|||.|--|.. | .++.- +-+.++...+..
T Consensus 65 etgv~ipSmClSaHRRfPfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~lA 144 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFPFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVELA 144 (287)
T ss_pred HhCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHHH
Confidence 5799999999998422 11 2 2346777788999999988741 2 13333 333344332222
Q ss_pred CCCCCcEEEEecC
Q 027753 65 LVKREDLFITTKL 77 (219)
Q Consensus 65 ~~~R~~~~I~tK~ 77 (219)
.|.+|.++.-+
T Consensus 145 --~~aqV~lAvEi 155 (287)
T COG3623 145 --ARAQVMLAVEI 155 (287)
T ss_pred --HhhccEEEeee
Confidence 56778877666
No 55
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=51.24 E-value=58 Score=29.90 Aligned_cols=122 Identities=17% Similarity=0.133 Sum_probs=67.1
Q ss_pred HHHHHHHhCCceee--cCccc---CCH-------HHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchH------------
Q 027753 29 LIINAIKIGYRHID--CAADY---RNE-------AEVGEALAEAFSTGLVKREDLFITTKLWNSDHGH------------ 84 (219)
Q Consensus 29 ~l~~A~~~Gi~~~D--ta~~Y---g~e-------~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~------------ 84 (219)
-....-..|+..+= ||-.| |++ ..+..+-++.+... -+-.+++++-+..-+-..
T Consensus 107 ~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~--L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l 184 (546)
T PF01175_consen 107 HFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGD--LAGKLFLTAGLGGMGGAQPLAATMAGGVGL 184 (546)
T ss_dssp HHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS---TT-EEEEE--STTCCHHHHHHHHTT-EEE
T ss_pred HHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCC--CcceEEEEecccccccchHHHHHhcCceEE
Confidence 34555666776543 44333 333 33444445543322 567799998885542111
Q ss_pred -HHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC--
Q 027753 85 -VLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL-- 161 (219)
Q Consensus 85 -i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-- 161 (219)
+.-+-+..-+|+.+.|+|.+. . ++++++...++.+++|+..+||+-.
T Consensus 185 ~vEvd~~ri~kR~~~g~ld~~~-~-----------------------------~ldea~~~~~ea~~~~~~~SIg~~GN~ 234 (546)
T PF01175_consen 185 IVEVDPSRIEKRLEQGYLDEVT-D-----------------------------DLDEALARAKEARAKKEPLSIGLLGNA 234 (546)
T ss_dssp EEES-HHHHHHHHHTTSSSEEE-S-----------------------------SHHHHHHHHHHHHHTT--EEEEEES-H
T ss_pred EEEECHHHHHHHHhCCCeeEEc-C-----------------------------CHHHHHHHHHHhhccCCeeEEEEeccH
Confidence 011123344688888998872 1 1678999999999999999999986
Q ss_pred HHHHHHHHhc-CCceee--eeecC
Q 027753 162 NFVCVHCLVY-IIPAFL--FKLSF 182 (219)
Q Consensus 162 ~~~l~~~~~~-~~p~v~--q~~~~ 182 (219)
.+.+.++++. +.|++. |...|
T Consensus 235 ad~~~~l~~~~i~pDl~tDQTS~H 258 (546)
T PF01175_consen 235 ADLWEELVERGIIPDLVTDQTSAH 258 (546)
T ss_dssp HHHHHHHHHTT---SEE---SSTT
T ss_pred HHHHHHHHHcCCCCCcccCCCccc
Confidence 8888888888 556555 65544
No 56
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=51.10 E-value=33 Score=27.32 Aligned_cols=58 Identities=9% Similarity=-0.038 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCccEEEecC---HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 141 TWHAMEDLVSMGLVRSIGIRL---NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir~iGvS~---~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
..+.++.++++--=-.+|..+ .++++.+++.. .+.-.+| ...++++++|+++|+.++.
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aG----A~FivSP---~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAG----AQFIVSP---GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-----SEEEES---S--HHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcC----CCEEECC---CCCHHHHHHHHHcCCcccC
Confidence 334444444432224688888 88999888762 1111233 3378999999999999886
No 57
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=50.26 E-value=1.3e+02 Score=25.63 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=62.9
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEecCCC----CCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCC
Q 027753 53 VGEALAEAFSTGLVKREDLFITTKLWN----SDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADG 128 (219)
Q Consensus 53 vg~al~~~~~~~~~~R~~~~I~tK~~~----~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~ 128 (219)
+-++.++. ....+-|++++-. -+++.+.+.++ .+..+|+|-|-+..||-...
T Consensus 170 y~dav~r~------rkrgIkvc~HiI~GLPgE~~~~mleTak-~v~~~~v~GIKlH~Lhvvkg----------------- 225 (312)
T COG1242 170 YVDAVKRL------RKRGIKVCTHLINGLPGETRDEMLETAK-IVAELGVDGIKLHPLHVVKG----------------- 225 (312)
T ss_pred HHHHHHHH------HHcCCeEEEEEeeCCCCCCHHHHHHHHH-HHHhcCCceEEEEEEEEecC-----------------
Confidence 44555554 3335888888722 26677777777 67789999999999997543
Q ss_pred cccccccccHHHHHHHHHHHHHcCCccEEEecC-HHHHHHHHhcCCceeeeeec
Q 027753 129 VLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL-NFVCVHCLVYIIPAFLFKLS 181 (219)
Q Consensus 129 ~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~~~l~~~~~~~~p~v~q~~~ 181 (219)
..|+++..+|..+.+-.-. .+.+.+.++..+|.++-...
T Consensus 226 --------------T~m~k~Y~~G~l~~ls~eeYv~~~~d~le~lpp~vviHRi 265 (312)
T COG1242 226 --------------TPMEKMYEKGRLKFLSLEEYVELVCDQLEHLPPEVVIHRI 265 (312)
T ss_pred --------------ChHHHHHHcCCceeccHHHHHHHHHHHHHhCCcceEEEEe
Confidence 2367888999988766555 77777777776676665443
No 58
>PRK13796 GTPase YqeH; Provisional
Probab=48.78 E-value=1.8e+02 Score=25.33 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=65.3
Q ss_pred CchhHHHHHHHHHHhC---CceeecCcccCC-HHHHHHHHHHHhhcCCCCCCcEEEEecCCCC----CchHHHHHHHHHH
Q 027753 22 DESNIRDLIINAIKIG---YRHIDCAADYRN-EAEVGEALAEAFSTGLVKREDLFITTKLWNS----DHGHVLEACKDSL 93 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~G---i~~~Dta~~Yg~-e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~----~~~~i~~~~~~sl 93 (219)
++++..++++...+.- +-.+|..+.-++ ...+.+.. + .+.-++|.+|.--. ..+.+.+-++...
T Consensus 55 ~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~------~--~kpviLViNK~DLl~~~~~~~~i~~~l~~~~ 126 (365)
T PRK13796 55 TDDDFLKLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV------G--NNPVLLVGNKADLLPKSVKKNKVKNWLRQEA 126 (365)
T ss_pred CHHHHHHHHHhhcccCcEEEEEEECccCCCchhHHHHHHh------C--CCCEEEEEEchhhCCCccCHHHHHHHHHHHH
Confidence 4555666666665544 345676665543 22222222 1 34557789998322 2345555566666
Q ss_pred HHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC
Q 027753 94 KKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL 161 (219)
Q Consensus 94 ~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 161 (219)
+.+|....+++++..-... .+.+.++.+.+..+.+.+--+|.+|
T Consensus 127 k~~g~~~~~v~~vSAk~g~------------------------gI~eL~~~I~~~~~~~~v~vvG~~N 170 (365)
T PRK13796 127 KELGLRPVDVVLISAQKGH------------------------GIDELLEAIEKYREGRDVYVVGVTN 170 (365)
T ss_pred HhcCCCcCcEEEEECCCCC------------------------CHHHHHHHHHHhcCCCeEEEEcCCC
Confidence 7777655577766542211 2567888888777778899999999
No 59
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=48.64 E-value=1.8e+02 Score=25.30 Aligned_cols=139 Identities=13% Similarity=0.091 Sum_probs=74.0
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC-CchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCC
Q 027753 47 YRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALD 125 (219)
Q Consensus 47 Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~-~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~ 125 (219)
+|.++.+-+++++..++. ..+=++|.|-+-+. --+.+..-+++.-++.+. .++.+|.+...
T Consensus 56 ~G~~~kL~~~i~~~~~~~--~P~~i~v~~sC~~~iIGdD~~~v~~~~~~~~~~---~vi~v~~~gf~------------- 117 (398)
T PF00148_consen 56 FGGEEKLREAIKEIAEKY--KPKAIFVVTSCVPEIIGDDIEAVARELQEEYGI---PVIPVHTPGFS------------- 117 (398)
T ss_dssp HTSHHHHHHHHHHHHHHH--STSEEEEEE-HHHHHTTTTHHHHHHHHHHHHSS---EEEEEE--TTS-------------
T ss_pred hcchhhHHHHHHHHHhcC--CCcEEEEECCCCHHHhCCCHHHHHHHhhcccCC---cEEEEECCCcc-------------
Confidence 467888888888776554 45667787776322 223344444444445553 78888887652
Q ss_pred CCCcccccccccHHHHHHHHHHHH-H------cCCccEEEecC-----HHHHHHHHhcCCceeeeee--cCcchh-----
Q 027753 126 ADGVLEIDTTISLETTWHAMEDLV-S------MGLVRSIGIRL-----NFVCVHCLVYIIPAFLFKL--SFPLAV----- 186 (219)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~l~~l~-~------~G~ir~iGvS~-----~~~l~~~~~~~~p~v~q~~--~~~~~~----- 186 (219)
.+.......++.+|-+.. + ++.|--||.++ ..++.++++..-..++... ...+..
T Consensus 118 ------~~~~~G~~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~ 191 (398)
T PF00148_consen 118 ------GSYSQGYDAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAP 191 (398)
T ss_dssp ------SSHHHHHHHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGG
T ss_pred ------CCccchHHHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCC
Confidence 122223556666666555 2 35677789886 4566666665333333222 222211
Q ss_pred ----------hhHHHHHHHHHhc-CceEEe-cCcc
Q 027753 187 ----------IVEKTLDQWQVDT-SLKLMR-GSQF 209 (219)
Q Consensus 187 ----------~~~~~l~~~~~~~-gi~i~~-~sp~ 209 (219)
.....+.++.+++ |++++. -+|+
T Consensus 192 ~A~lniv~~~~~~~~~a~~L~e~~giP~~~~~~p~ 226 (398)
T PF00148_consen 192 EAALNIVLCPEGGPYAAEWLEERFGIPYLYFPSPY 226 (398)
T ss_dssp GSSEEEESSCCHHHHHHHHHHHHHT-EEEEEC-SB
T ss_pred cCcEEEEeccchhhHHHHHHHHHhCCCeeeccccc
Confidence 1113366776665 999988 4443
No 60
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.23 E-value=58 Score=26.23 Aligned_cols=57 Identities=9% Similarity=-0.000 Sum_probs=37.6
Q ss_pred HHHHHHHHHHcCC---ccEEEecC---HHHHHHHHhc-CCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 141 TWHAMEDLVSMGL---VRSIGIRL---NFVCVHCLVY-IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 141 ~~~~l~~l~~~G~---ir~iGvS~---~~~l~~~~~~-~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
..+.+++++++-. =-.||..+ .++++.+++. -... .+| ....+++++|+++||.++.
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fi-----vsP---~~~~~v~~~~~~~~i~~iP 114 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFI-----VSP---SFNRETAKICNLYQIPYLP 114 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEE-----ECC---CCCHHHHHHHHHcCCCEEC
Confidence 5566666765421 13578777 9999998886 2221 233 2367888999999988875
No 61
>PLN00191 enolase
Probab=48.12 E-value=2.2e+02 Score=25.94 Aligned_cols=65 Identities=12% Similarity=0.077 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCccEEE----ecCHHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcCceEEe
Q 027753 141 TWHAMEDLVSMGLVRSIG----IRLNFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir~iG----vS~~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~ 205 (219)
-|+.+.+|.+...+.-+| ++|++.+.++++.....++++-.+-+. -.....+.+.|+++|+.++.
T Consensus 324 D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~a~lA~~~G~~~~i 393 (457)
T PLN00191 324 DWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEAVKMSKAAGWGVMT 393 (457)
T ss_pred cHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 577778888888888888 355888888887754555555555443 23357789999999999866
No 62
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=47.89 E-value=1.4e+02 Score=23.81 Aligned_cols=32 Identities=9% Similarity=-0.025 Sum_probs=26.1
Q ss_pred cCCccEEEecC---HHHHHHHHhcCCceeeeeecC
Q 027753 151 MGLVRSIGIRL---NFVCVHCLVYIIPAFLFKLSF 182 (219)
Q Consensus 151 ~G~ir~iGvS~---~~~l~~~~~~~~p~v~q~~~~ 182 (219)
.+.++.+||-. ++.+.++++...+.++|.+-.
T Consensus 52 ~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 52 PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 35689999985 888888888788899999853
No 63
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=47.79 E-value=1.6e+02 Score=24.27 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=56.4
Q ss_pred ccCCchhHHHHHHHHHHhCCceeecCcccCCHHH--------------------HHHHHHHHhhcCCCCCCcEEEEecCC
Q 027753 19 WRMDESNIRDLIINAIKIGYRHIDCAADYRNEAE--------------------VGEALAEAFSTGLVKREDLFITTKLW 78 (219)
Q Consensus 19 ~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~--------------------vg~al~~~~~~~~~~R~~~~I~tK~~ 78 (219)
+.++.++..++.+++-+.|+.+|-|.....+-.. +=+.+.+ ....++|+|=.
T Consensus 51 ~el~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-------tgkPvIlSTG~- 122 (241)
T PF03102_consen 51 LELSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAK-------TGKPVILSTGM- 122 (241)
T ss_dssp HSS-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-------T-S-EEEE-TT-
T ss_pred hcCCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHH-------hCCcEEEECCC-
Confidence 4668899999999999999999977643321111 1111111 12235555433
Q ss_pred CCCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEE
Q 027753 79 NSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIG 158 (219)
Q Consensus 79 ~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iG 158 (219)
.+.+.|.++++...+. ..-++.++|+...+.. ++. +-.++.|..|++.=- --||
T Consensus 123 -stl~EI~~Av~~~~~~---~~~~l~llHC~s~YP~------------------~~e---~~NL~~i~~L~~~f~-~~vG 176 (241)
T PF03102_consen 123 -STLEEIERAVEVLREA---GNEDLVLLHCVSSYPT------------------PPE---DVNLRVIPTLKERFG-VPVG 176 (241)
T ss_dssp ---HHHHHHHHHHHHHH---CT--EEEEEE-SSSS--------------------GG---G--TTHHHHHHHHST-SEEE
T ss_pred -CCHHHHHHHHHHHHhc---CCCCEEEEecCCCCCC------------------ChH---HcChHHHHHHHHhcC-CCEE
Confidence 3456666666665333 3578999999876522 111 114455566665433 5679
Q ss_pred ecC
Q 027753 159 IRL 161 (219)
Q Consensus 159 vS~ 161 (219)
.|.
T Consensus 177 ~SD 179 (241)
T PF03102_consen 177 YSD 179 (241)
T ss_dssp EEE
T ss_pred eCC
Confidence 998
No 64
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=47.58 E-value=2e+02 Score=26.20 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=32.9
Q ss_pred eccccCCchhHHHHHHHHHHhCCceeecCcccCCHHHHHHHHHHHhhcC
Q 027753 16 LGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTG 64 (219)
Q Consensus 16 lG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~~~~~ 64 (219)
+|.-..+++-....++.|.+.|+..|=....-...+.+-.+++...+.|
T Consensus 97 vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G 145 (468)
T PRK12581 97 LGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDPRNIQQALRAVKKTG 145 (468)
T ss_pred cCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCHHHHHHHHHHHHHcC
Confidence 4444556777888999999999998877766654444555555443335
No 65
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=47.48 E-value=1.7e+02 Score=24.68 Aligned_cols=42 Identities=2% Similarity=0.070 Sum_probs=28.3
Q ss_pred HHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCcc
Q 027753 164 VCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 164 ~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~ 209 (219)
.+.++++. ++..++-+.+++.. . ++.++|++.|+++++--||
T Consensus 205 r~~el~~~f~ip~~iViNr~~~g~---s-~ie~~~~e~gi~il~~IPy 248 (284)
T COG1149 205 RALELVEHFGIPTGIVINRYNLGD---S-EIEEYCEEEGIPILGEIPY 248 (284)
T ss_pred HHHHHHHHhCCceEEEEecCCCCc---h-HHHHHHHHcCCCeeEECCc
Confidence 33344444 55555555554322 3 8999999999999999998
No 66
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=47.26 E-value=2.1e+02 Score=25.48 Aligned_cols=105 Identities=13% Similarity=-0.029 Sum_probs=55.6
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC-CchHHHHHHHHHHHHhC-CCcccEEEeecCCCCCCCCCCCcCCc
Q 027753 46 DYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQ-LDYLDLYLVHFPVATKHTGVGTTDSA 123 (219)
Q Consensus 46 ~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~-~~~~i~~~~~~sl~~Lg-~d~lDl~~lh~p~~~~~~~~~~~~~~ 123 (219)
.||.++.+-+++++..+.. +.+=++|.|-+.+. --+.+..-+++.-++.. -..+.++.++.|+....
T Consensus 62 V~Gg~~~L~~~i~~~~~~~--~p~~I~v~~tC~~~liGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~g~--------- 130 (428)
T cd01965 62 VFGGEDNLIEALKNLLSRY--KPDVIGVLTTCLTETIGDDVAGFIKEFRAEGPEPADFPVVYASTPSFKGS--------- 130 (428)
T ss_pred eECcHHHHHHHHHHHHHhc--CCCEEEEECCcchhhcCCCHHHHHHHHHhhccCCCCCeEEEeeCCCCCCc---------
Confidence 4578888889998875554 34457777766332 22333333333332211 02355777777765411
Q ss_pred CCCCCcccccccccHHHHHHHHHHH-------HHcCCccEEEecC-----HHHHHHHHhc
Q 027753 124 LDADGVLEIDTTISLETTWHAMEDL-------VSMGLVRSIGIRL-----NFVCVHCLVY 171 (219)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~l-------~~~G~ir~iGvS~-----~~~l~~~~~~ 171 (219)
.......++++|-+. ++.++|--||-++ .+.+.++++.
T Consensus 131 ----------~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~ 180 (428)
T cd01965 131 ----------HETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEA 180 (428)
T ss_pred ----------HHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHH
Confidence 011233344444332 2345576776554 5677777777
No 67
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=47.08 E-value=90 Score=24.94 Aligned_cols=31 Identities=6% Similarity=-0.098 Sum_probs=25.5
Q ss_pred CCccEEEecC---HHHHHHHHhcCCceeeeeecC
Q 027753 152 GLVRSIGIRL---NFVCVHCLVYIIPAFLFKLSF 182 (219)
Q Consensus 152 G~ir~iGvS~---~~~l~~~~~~~~p~v~q~~~~ 182 (219)
+.++.+||-- ++.+.++++...++++|.+-.
T Consensus 51 ~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~ 84 (207)
T PRK13958 51 NHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGT 84 (207)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCC
Confidence 5688999974 888989888788899999853
No 68
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=46.61 E-value=8.9 Score=33.71 Aligned_cols=54 Identities=7% Similarity=-0.042 Sum_probs=32.5
Q ss_pred HHcCCccEEEecC--HHHHHHHHhc-CCceeeeeecCcchhhhHHHHHHHHHhcCce
Q 027753 149 VSMGLVRSIGIRL--NFVCVHCLVY-IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLK 202 (219)
Q Consensus 149 ~~~G~ir~iGvS~--~~~l~~~~~~-~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~ 202 (219)
-=-|+||++||-- .+.+.++.+. ..-.+.+.....+....+..+++.+++.||+
T Consensus 261 TCVGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 261 TCVGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hhhcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 3359999999998 8888887665 2222222222222222355667777777775
No 69
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.39 E-value=1.7e+02 Score=24.27 Aligned_cols=93 Identities=11% Similarity=0.054 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCC---ccEEEecC
Q 027753 85 VLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL---VRSIGIRL 161 (219)
Q Consensus 85 i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~---ir~iGvS~ 161 (219)
-+..+-+.|.++|++.|.+-. |... ...+++.+.+.+.++ +-.+...+
T Consensus 23 ~k~~i~~~L~~~Gv~~IEvG~---P~~~--------------------------~~~~~~~~~l~~~~~~~~v~~~~r~~ 73 (262)
T cd07948 23 DKIEIAKALDAFGVDYIELTS---PAAS--------------------------PQSRADCEAIAKLGLKAKILTHIRCH 73 (262)
T ss_pred HHHHHHHHHHHcCCCEEEEEC---CCCC--------------------------HHHHHHHHHHHhCCCCCcEEEEecCC
Confidence 344556669999999988873 4332 123444445544343 32233333
Q ss_pred HHHHHHHHhcCCceee-eeecCcch--------h----hhHHHHHHHHHhcCceEEec
Q 027753 162 NFVCVHCLVYIIPAFL-FKLSFPLA--------V----IVEKTLDQWQVDTSLKLMRG 206 (219)
Q Consensus 162 ~~~l~~~~~~~~p~v~-q~~~~~~~--------~----~~~~~l~~~~~~~gi~i~~~ 206 (219)
.+.++.+++.....+. -...+... + ..-.+++++++++|+.+...
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 7788888877222222 22222211 0 01255678999999876544
No 70
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=46.36 E-value=16 Score=31.96 Aligned_cols=151 Identities=16% Similarity=0.112 Sum_probs=69.4
Q ss_pred CchhHHHHHHHHHHhCCceeecCcccCCH------HHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHH
Q 027753 22 DESNIRDLIINAIKIGYRHIDCAADYRNE------AEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKK 95 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e------~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~ 95 (219)
+.++..+.++.|.+.|++.+-|+=+...+ ..+.+.++.. ...++.|+.-+.+. +|+.
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a------~~~~~~v~~Disp~-----------~l~~ 74 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLA------KELGMEVIADISPK-----------VLKK 74 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHH------HHCT-EEEEEE-CC-----------HHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHH------HHCCCEEEEECCHH-----------HHHH
Confidence 35678899999999999999999777521 2222222322 33456676666444 2333
Q ss_pred hCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC--HHHHHHHHhc-C
Q 027753 96 LQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY-I 172 (219)
Q Consensus 96 Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~-~ 172 (219)
||.++-|+-.++..... - ++.|... ..+.+.+|-+.|.--.+=.|+ .+.+..+++. .
T Consensus 75 lg~~~~dl~~~~~lGi~--------~--------lRlD~Gf----~~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~ 134 (357)
T PF05913_consen 75 LGISYDDLSFFKELGID--------G--------LRLDYGF----SGEEIAKLSKNGIKIELNASTITEEELDELIKYGA 134 (357)
T ss_dssp TT-BTTBTHHHHHHT-S--------E--------EEESSS-----SCHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT-
T ss_pred cCCCHHHHHHHHHcCCC--------E--------EEECCCC----CHHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcC
Confidence 44433232222221100 0 0011111 124444566667765666666 6667777665 1
Q ss_pred Cc-eeee-eecCcch-hhhH----HHHHHHHHhcCceEEecCcc
Q 027753 173 IP-AFLF-KLSFPLA-VIVE----KTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 173 ~p-~v~q-~~~~~~~-~~~~----~~l~~~~~~~gi~i~~~sp~ 209 (219)
.+ .+.- .+|+|-. +... ...=++.++.||.+.|+-|-
T Consensus 135 ~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g 178 (357)
T PF05913_consen 135 NFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEYGIKTAAFIPG 178 (357)
T ss_dssp -GGGEEEE---B-STT-SB-HHHHHHHHHHHHHTT-EEEEEE--
T ss_pred CHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHCCCcEEEEecC
Confidence 11 1211 1233321 1111 44456778999999998774
No 71
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=46.14 E-value=2.2e+02 Score=25.53 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=40.2
Q ss_pred cccCCHHHHHHHHHHHhhcCCCCC-CcEEEEecCCCC-CchHHHHHHHHHHHHhCCCcccEEEeecCCCC
Q 027753 45 ADYRNEAEVGEALAEAFSTGLVKR-EDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (219)
Q Consensus 45 ~~Yg~e~~vg~al~~~~~~~~~~R-~~~~I~tK~~~~-~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~ 112 (219)
..||.+.-+.+++++..+.. ++ +=++|.+-+... --+.+..-+++.-++++ +.++.+|.|+..
T Consensus 97 ~V~Gg~~~L~~aI~~~~~~~--~p~~~I~V~~tC~~~liGdDi~~v~~~~~~~~~---~pvi~v~t~gf~ 161 (443)
T TIGR01862 97 IVFGGEKKLKKLIHEAFTEF--PLIKAISVYATCPTGLIGDDIEAVAKEVSKEIG---KDVVAVNCPGFA 161 (443)
T ss_pred eeeCcHHHHHHHHHHHHHhC--CccceEEEECCChHHHhccCHHHHHHHHHHhcC---CCEEEEecCCcc
Confidence 34788888889998876655 44 557777766332 23444444444444444 689999988754
No 72
>PRK15108 biotin synthase; Provisional
Probab=45.99 E-value=2e+02 Score=24.93 Aligned_cols=106 Identities=17% Similarity=0.139 Sum_probs=58.4
Q ss_pred CCchhHHHHHHHHHHhCCceeecCcc---cC--CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHH
Q 027753 21 MDESNIRDLIINAIKIGYRHIDCAAD---YR--NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKK 95 (219)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~Dta~~---Yg--~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~ 95 (219)
++.+++.+..+.+.+.|++.|-.... .. .-+.+.+.++.. ++..+.++.-....+ +..-+-|+.
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~i------k~~~i~v~~s~G~ls-----~e~l~~Lke 144 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGV------KAMGLETCMTLGTLS-----ESQAQRLAN 144 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHH------HhCCCEEEEeCCcCC-----HHHHHHHHH
Confidence 46788888888888999998854321 11 235566666654 112233332233333 233334667
Q ss_pred hCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCc
Q 027753 96 LQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLV 154 (219)
Q Consensus 96 Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i 154 (219)
.|+|.+. |+.+.. + +.... ..+...+.+.++.++.+++.|.-
T Consensus 145 AGld~~n----~~leT~-p---~~f~~---------I~~~~~~~~rl~~i~~a~~~G~~ 186 (345)
T PRK15108 145 AGLDYYN----HNLDTS-P---EFYGN---------IITTRTYQERLDTLEKVRDAGIK 186 (345)
T ss_pred cCCCEEe----eccccC-h---HhcCC---------CCCCCCHHHHHHHHHHHHHcCCc
Confidence 7877643 333221 1 00000 11223478899999999999973
No 73
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=44.90 E-value=97 Score=27.47 Aligned_cols=68 Identities=7% Similarity=-0.072 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcC-CccEEEecC-----HHHHHHHHhc-CCceeeeeecCcchh-hhHHHHHHHHHhcCceEEe
Q 027753 138 LETTWHAMEDLVSMG-LVRSIGIRL-----NFVCVHCLVY-IIPAFLFKLSFPLAV-IVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 138 ~~~~~~~l~~l~~~G-~ir~iGvS~-----~~~l~~~~~~-~~p~v~q~~~~~~~~-~~~~~l~~~~~~~gi~i~~ 205 (219)
-..+++.+..|.++| .|.++.|-. +++++++++. ...+.++.-+|-... -+-+++-+.|+++|+.+..
T Consensus 101 H~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHv 176 (386)
T COG1104 101 HPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHV 176 (386)
T ss_pred cHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHHHHHHHHHcCCeEEE
Confidence 456888888887788 599999986 9999999876 223333433343321 2258899999999976643
No 74
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=44.36 E-value=2e+02 Score=24.50 Aligned_cols=157 Identities=12% Similarity=0.023 Sum_probs=80.6
Q ss_pred CchhHHHHHHHHHHhCCceeecCcccC----------CHHHHHHHHHHHhh-----cCCCCCCcEEEEecCCCC------
Q 027753 22 DESNIRDLIINAIKIGYRHIDCAADYR----------NEAEVGEALAEAFS-----TGLVKREDLFITTKLWNS------ 80 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg----------~e~~vg~al~~~~~-----~~~~~R~~~~I~tK~~~~------ 80 (219)
.++..+++-...+++|-+.++|+. |. +++.+...++..++ +..+..+...|+.-+++.
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~ 119 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALAD 119 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcCh
Confidence 345566777777899999999875 64 22222222222211 011123334455555333
Q ss_pred --------CchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcC
Q 027753 81 --------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMG 152 (219)
Q Consensus 81 --------~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G 152 (219)
+.+.+.+-.+..++.|.-.-+|++..-..... ...+.+.+.++++ +
T Consensus 120 Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i-----------------------~Ea~Aiv~l~~~~---s 173 (300)
T COG2040 120 EYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNI-----------------------TEAEAIVQLVQEF---S 173 (300)
T ss_pred hhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCCh-----------------------HHHHHHHHHHHHh---C
Confidence 34555555666677776667998877653221 1133344444444 6
Q ss_pred CccEEEecC--------HHHHHHHHhc--C--CceeeeeecCcchhhhHHHHHHHH--HhcCceEEecC
Q 027753 153 LVRSIGIRL--------NFVCVHCLVY--I--IPAFLFKLSFPLAVIVEKTLDQWQ--VDTSLKLMRGS 207 (219)
Q Consensus 153 ~ir~iGvS~--------~~~l~~~~~~--~--~p~v~q~~~~~~~~~~~~~l~~~~--~~~gi~i~~~s 207 (219)
+=-+|+++- -..+.++... . ..+..=+++..++ .-..+++.. ...|+++++|-
T Consensus 174 ~p~wISfT~~d~~~lr~Gt~l~eaa~~~~~~~~iaa~gvNC~~p~--~~~a~i~~l~~~~~~~piivYP 240 (300)
T COG2040 174 KPAWISFTLNDDTRLRDGTPLSEAAAILAGLPNIAALGVNCCHPD--HIPAAIEELSKLLTGKPIIVYP 240 (300)
T ss_pred CceEEEEEeCCCCccCCCccHHHHHHHHhcCcchhheeeccCChh--hhHHHHHHHHhcCCCCceEEcC
Confidence 666777763 2333343333 2 2233333333332 244555555 44577777764
No 75
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=43.87 E-value=1.6e+02 Score=23.13 Aligned_cols=101 Identities=14% Similarity=0.201 Sum_probs=53.4
Q ss_pred CCccccceeccccCCchhHHHHHHHHHHhCCceeecCcccCC---HHHHHHHHHHHhhcCCCCCCcEEEEecCCCC----
Q 027753 8 GFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRN---EAEVGEALAEAFSTGLVKREDLFITTKLWNS---- 80 (219)
Q Consensus 8 g~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~---e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~---- 80 (219)
|.++-.+||++-..-+.+..+.+.. +++-+-.+|+.++... .+.+..+++...+.+ |.-.+++++.++..
T Consensus 33 ~~~~iNLGfsG~~~le~~~a~~ia~-~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~h--P~tPIllv~~~~~~~~~~ 109 (178)
T PF14606_consen 33 GLDVINLGFSGNGKLEPEVADLIAE-IDADLIVLDCGPNMSPEEFRERLDGFVKTIREAH--PDTPILLVSPIPYPAGYF 109 (178)
T ss_dssp T-EEEEEE-TCCCS--HHHHHHHHH-S--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE----TTTTS
T ss_pred CCCeEeeeecCccccCHHHHHHHhc-CCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEecCCcccccc
Confidence 5556667777744444445555543 3667778888887542 333444555443344 66778888877433
Q ss_pred ------CchHHHHHHHHHHHHh-CCCcccEEEeecCCC
Q 027753 81 ------DHGHVLEACKDSLKKL-QLDYLDLYLVHFPVA 111 (219)
Q Consensus 81 ------~~~~i~~~~~~sl~~L-g~d~lDl~~lh~p~~ 111 (219)
..+..++.+++..+.| .-..-++++++..+.
T Consensus 110 ~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~l 147 (178)
T PF14606_consen 110 DNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEEL 147 (178)
T ss_dssp --TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHHC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchhh
Confidence 2356777777777777 234678888887653
No 76
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=43.76 E-value=68 Score=29.09 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCccEEEecC--HHHHHHHHhc-CCceee--eeecC
Q 027753 138 LETTWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY-IIPAFL--FKLSF 182 (219)
Q Consensus 138 ~~~~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~-~~p~v~--q~~~~ 182 (219)
++|+++-.++.++.|+-.+||+-. .+.+.++++. +.|+++ |...|
T Consensus 219 ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 219 LDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred HHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 678999999999999999999997 8888888888 777766 54444
No 77
>PRK14017 galactonate dehydratase; Provisional
Probab=43.74 E-value=2.2e+02 Score=24.91 Aligned_cols=68 Identities=9% Similarity=-0.008 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCcc-EEEecC--HHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcCceEEecCc
Q 027753 141 TWHAMEDLVSMGLVR-SIGIRL--NFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir-~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
.++.+.+|.+...+. ..|=|- ...+..+++.....++|.....+. -..-..+.+.|+++||.++.++.
T Consensus 216 d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 216 NAEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred CHHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 457778888877665 222222 777888877655677777755443 33467889999999999998764
No 78
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=43.11 E-value=1.7e+02 Score=23.30 Aligned_cols=100 Identities=7% Similarity=0.072 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC--H
Q 027753 85 VLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL--N 162 (219)
Q Consensus 85 i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~--~ 162 (219)
++..+++.|....-+..|.+.+..--. .+......|+++.+=|+=--+++.| .
T Consensus 60 iq~Dld~gL~~f~d~sFD~VIlsqtLQ-------------------------~~~~P~~vL~EmlRVgr~~IVsFPNFg~ 114 (193)
T PF07021_consen 60 IQGDLDEGLADFPDQSFDYVILSQTLQ-------------------------AVRRPDEVLEEMLRVGRRAIVSFPNFGH 114 (193)
T ss_pred EECCHHHhHhhCCCCCccEEehHhHHH-------------------------hHhHHHHHHHHHHHhcCeEEEEecChHH
Confidence 444455666666666677666654211 1334556688888889888899999 4
Q ss_pred HHHH-HHHhc-CCceeeeeecCcchh-----hhHHHHHHHHHhcCceEEecCcc
Q 027753 163 FVCV-HCLVY-IIPAFLFKLSFPLAV-----IVEKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 163 ~~l~-~~~~~-~~p~v~q~~~~~~~~-----~~~~~l~~~~~~~gi~i~~~sp~ 209 (219)
+... .++-. ..|..-+.+|.=+++ ..-++..++|++.||.|.-..++
T Consensus 115 W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~ 168 (193)
T PF07021_consen 115 WRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFL 168 (193)
T ss_pred HHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEE
Confidence 4443 33323 566665555432221 12488899999999999876665
No 79
>PRK09248 putative hydrolase; Validated
Probab=42.93 E-value=1.8e+02 Score=23.57 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHhCCceeecCccc
Q 027753 24 SNIRDLIINAIKIGYRHIDCAADY 47 (219)
Q Consensus 24 ~~~~~~l~~A~~~Gi~~~Dta~~Y 47 (219)
....+.++.|.+.|+..+=.++++
T Consensus 19 ~~~~e~v~~A~~~G~~~i~iTdH~ 42 (246)
T PRK09248 19 STLHENAAEAKQKGLKLFAITDHG 42 (246)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCC
Confidence 457899999999999988777665
No 80
>PRK00912 ribonuclease P protein component 3; Provisional
Probab=41.92 E-value=1.9e+02 Score=23.40 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHHhCCceeecCcccC
Q 027753 23 ESNIRDLIINAIKIGYRHIDCAADYR 48 (219)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg 48 (219)
.....+.+..|.+.|+..|=.+++..
T Consensus 15 ~~~~~e~i~~A~~~Gl~~i~itdH~~ 40 (237)
T PRK00912 15 YDTVLRLISEASHLGYSGIALSNHSD 40 (237)
T ss_pred cchHHHHHHHHHHCCCCEEEEecCcc
Confidence 45678999999999999887777753
No 81
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.24 E-value=1.2e+02 Score=26.47 Aligned_cols=64 Identities=14% Similarity=0.015 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCccEEEecC-----HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 141 TWHAMEDLVSMGLVRSIGIRL-----NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir~iGvS~-----~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
++...|+|.++-.|..+=|+. .+.+..+++..++..+..+. .++-..-+++++.|+++|+.++-
T Consensus 60 ~y~syEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~EKPl-a~n~~e~~~iveaA~~rgv~~me 128 (351)
T KOG2741|consen 60 AYGSYEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLCEKPL-AMNVAEAEEIVEAAEARGVFFME 128 (351)
T ss_pred cccCHHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEecccc-cCCHHHHHHHHHHHHHcCcEEEe
Confidence 566778899988766665555 56666666667775555542 12234458899999999988764
No 82
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=41.23 E-value=2.9e+02 Score=25.44 Aligned_cols=60 Identities=8% Similarity=-0.011 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCCcccEEEeecCCCC
Q 027753 47 YRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (219)
Q Consensus 47 Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~ 112 (219)
+|.++.+-+++++..++. +.+=++|.+-+ .++-|-.+++...+.++. .+.++.++.|...
T Consensus 67 ~G~~ekL~~aI~~~~~~~--~P~~I~V~sTC---~seiIGdDi~~v~~~~~~-~~~Vi~v~t~gf~ 126 (519)
T PRK02910 67 RGTAELLKDTLRRADERF--QPDLIVVGPSC---TAELLQEDLGGLAKHAGL-PIPVLPLELNAYR 126 (519)
T ss_pred CChHHHHHHHHHHHHHhc--CCCEEEEeCCc---HHHHhccCHHHHHHHhCC-CCCEEEEecCCcc
Confidence 457777888888764433 33345666665 234444445555555554 3678888988654
No 83
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=41.21 E-value=56 Score=23.72 Aligned_cols=23 Identities=17% Similarity=-0.065 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHhcCceEEecCc
Q 027753 186 VIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 186 ~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
...+..|++++++.|+++..|++
T Consensus 44 K~~E~~l~~~A~~l~~~~~~~~~ 66 (121)
T PF01890_consen 44 KADEPGLLELAEELGIPLRFFSA 66 (121)
T ss_dssp SS--HHHHHHHHHCTSEEEEE-H
T ss_pred cCCCHHHHHHHHHhCCCeEEECH
Confidence 34578999999999999999987
No 84
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=39.06 E-value=2.6e+02 Score=24.20 Aligned_cols=67 Identities=7% Similarity=-0.069 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCCcc-EEEecC--HHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcCceEEecC
Q 027753 141 TWHAMEDLVSMGLVR-SIGIRL--NFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGS 207 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir-~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~s 207 (219)
.++.+.+|.+...+. +.|=|- ..++.++++.....++|.....+. -..-..+...|+++|+.++..+
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~ 297 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGT 297 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecC
Confidence 567777888875554 333322 777788877655666776654432 2345788999999999998654
No 85
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=38.67 E-value=2e+02 Score=22.97 Aligned_cols=58 Identities=12% Similarity=-0.040 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCccEEEecC---HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 141 TWHAMEDLVSMGLVRSIGIRL---NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir~iGvS~---~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
..+.+++++++.-=-.||..+ .++.+.+++... +.-.+| ....+++++|+++|+.++.
T Consensus 46 a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA----~FivsP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 46 ALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA----QFIVSP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC----CEEECC---CCCHHHHHHHHHcCCcEEC
Confidence 556667777654335688888 999999887611 111233 2267999999999998886
No 86
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=38.62 E-value=30 Score=28.33 Aligned_cols=56 Identities=21% Similarity=0.039 Sum_probs=32.3
Q ss_pred ecCCCCccccceeccccC----------------CchhHHHHHHHHHHhCCceeecCcccCCHHHHHHHHHHH
Q 027753 4 TLNNGFKMPIIGLGVWRM----------------DESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEA 60 (219)
Q Consensus 4 ~~~~g~~vs~lglG~~~~----------------~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~ 60 (219)
.+....+|.++++-+..- .-+-.......|.+.|++.||.. ||.+|...=+.|.+.
T Consensus 163 ~g~~~~~v~rVav~~GsG~~~i~~a~~~g~D~~ITGd~~~h~~~~a~~~g~~lI~~g-H~~sE~~~~~~l~~~ 234 (241)
T PF01784_consen 163 VGDPDKKVKRVAVCGGSGGSFIEEAAEAGADVYITGDIKYHDAQDAKENGINLIDAG-HYASERPGMEALAEW 234 (241)
T ss_dssp ESCTTSEEEEEEEECSSSGGGHHHHHHTTSSEEEESS--HHHHHHHHHCTSEEEE---HHHHGGHHHHHHHHH
T ss_pred cCCCCCcccEEEEEcccCccHHHHHHhCCCeEEEEccCcHHHHHHHHHCCCEEEEcC-CHHHHHHHHHHHHHH
Confidence 345666677776554221 11223345667788899999875 677776666666554
No 87
>PLN02363 phosphoribosylanthranilate isomerase
Probab=38.19 E-value=1.4e+02 Score=24.87 Aligned_cols=42 Identities=5% Similarity=-0.074 Sum_probs=28.9
Q ss_pred HHHHHHHHHHcCCccEEEec-C--HHHHHHHHhcCCceeeeeecC
Q 027753 141 TWHAMEDLVSMGLVRSIGIR-L--NFVCVHCLVYIIPAFLFKLSF 182 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir~iGvS-~--~~~l~~~~~~~~p~v~q~~~~ 182 (219)
..+.+.+......++.+||- | ++.+.++++...++++|++-.
T Consensus 87 ~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~ 131 (256)
T PLN02363 87 VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHGN 131 (256)
T ss_pred HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 44444444333346789997 4 888888888788899999853
No 88
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=38.19 E-value=2.4e+02 Score=23.56 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=29.0
Q ss_pred ecCCCCccccceeccccCCchhHHHHHHHHHHhCCceeecCc
Q 027753 4 TLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAA 45 (219)
Q Consensus 4 ~~~~g~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~ 45 (219)
.++.|.+.+...|.+ ++..++.+.-.+.|++.|+...
T Consensus 5 TlRDG~Q~~~~~~s~-----e~K~~i~~~L~~~Gv~~IEvGs 41 (274)
T cd07938 5 GPRDGLQNEKTFIPT-----EDKIELIDALSAAGLRRIEVTS 41 (274)
T ss_pred CCCCCCcCCCCCcCH-----HHHHHHHHHHHHcCCCEEEeCC
Confidence 467777777665554 7788888888899999999873
No 89
>PRK08123 histidinol-phosphatase; Reviewed
Probab=37.36 E-value=2.4e+02 Score=23.34 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHhCCceeecCccc
Q 027753 24 SNIRDLIINAIKIGYRHIDCAADY 47 (219)
Q Consensus 24 ~~~~~~l~~A~~~Gi~~~Dta~~Y 47 (219)
+...+.++.|.+.|+..|=.+.+.
T Consensus 19 ~~~e~~v~~Ai~~Gl~~i~~tdH~ 42 (270)
T PRK08123 19 DDLEAYIERAIELGFTEITFTEHA 42 (270)
T ss_pred CCHHHHHHHHHHcCCcEEEEeccC
Confidence 356899999999999988777664
No 90
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=37.22 E-value=60 Score=28.98 Aligned_cols=123 Identities=14% Similarity=0.049 Sum_probs=62.1
Q ss_pred CCCCcEEE-EecCCCCCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHH
Q 027753 66 VKREDLFI-TTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHA 144 (219)
Q Consensus 66 ~~R~~~~I-~tK~~~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (219)
+.+.+++| -|-.++-+-+.+..-+.+...-|... -|+++.|+|+.-.++ .-..........---.. .+..+.
T Consensus 118 L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~-~Df~laysPERv~PG---~~~~el~~~~kVIgG~t---p~~~e~ 190 (436)
T COG0677 118 LKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFG-EDFYLAYSPERVLPG---NVLKELVNNPKVIGGVT---PKCAEL 190 (436)
T ss_pred cCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccc-ceeeEeeCccccCCC---chhhhhhcCCceeecCC---HHHHHH
Confidence 35556665 35556656566665555554445543 899999999987653 22211111111100111 223333
Q ss_pred HHHHHHcCCccEEEecC--HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceE
Q 027753 145 MEDLVSMGLVRSIGIRL--NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKL 203 (219)
Q Consensus 145 l~~l~~~G~ir~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i 203 (219)
...|++.=.-+-+=+++ .....++++...=+||-.. -++|.-.|.+.||.+
T Consensus 191 a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIAL--------aNElali~~~~GIdv 243 (436)
T COG0677 191 AAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIAL--------ANELALICNAMGIDV 243 (436)
T ss_pred HHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHH--------HHHHHHHHHHhCCcH
Confidence 44444433333566666 6777777775322333222 344555666666654
No 91
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.18 E-value=79 Score=25.72 Aligned_cols=43 Identities=5% Similarity=-0.012 Sum_probs=30.9
Q ss_pred EEEecC---HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 156 SIGIRL---NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 156 ~iGvS~---~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
.+|..+ .++.+.+++.. .+.-.+| ....+++++|+++||.++.
T Consensus 72 ~vGaGTVl~~e~a~~a~~aG----A~FiVsP---~~~~~v~~~~~~~~i~~iP 117 (222)
T PRK07114 72 ILGVGSIVDAATAALYIQLG----ANFIVTP---LFNPDIAKVCNRRKVPYSP 117 (222)
T ss_pred EEeeEeCcCHHHHHHHHHcC----CCEEECC---CCCHHHHHHHHHcCCCEeC
Confidence 588887 89998888751 1222233 3367899999999998876
No 92
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=37.11 E-value=2.4e+02 Score=23.31 Aligned_cols=62 Identities=10% Similarity=-0.051 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHc-CCccEEEecC--HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEec
Q 027753 138 LETTWHAMEDLVSM-GLVRSIGIRL--NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRG 206 (219)
Q Consensus 138 ~~~~~~~l~~l~~~-G~ir~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~ 206 (219)
++.....++.+++. +.. +.+=+ ++.++.+++...+.+|-+.... .+++++.++++|.+++..
T Consensus 60 ~~rl~~~v~~~~~~~~~p--lsiDT~~~~vi~~al~~G~~iINsis~~~-----~~~~~~l~~~~~~~vV~m 124 (257)
T TIGR01496 60 LNRVVPVIKALRDQPDVP--ISVDTYRAEVARAALEAGADIINDVSGGQ-----DPAMLEVAAEYGVPLVLM 124 (257)
T ss_pred HHHHHHHHHHHHhcCCCe--EEEeCCCHHHHHHHHHcCCCEEEECCCCC-----CchhHHHHHHcCCcEEEE
Confidence 33455666666665 543 44444 9999999987656666554321 567888999999988874
No 93
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=36.84 E-value=2.6e+02 Score=23.69 Aligned_cols=115 Identities=13% Similarity=0.054 Sum_probs=71.8
Q ss_pred CCCcEEEEecCCCC-----CchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCC-----------CCCcCCcCCCCCc-
Q 027753 67 KREDLFITTKLWNS-----DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTG-----------VGTTDSALDADGV- 129 (219)
Q Consensus 67 ~R~~~~I~tK~~~~-----~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~-----------~~~~~~~~~~~~~- 129 (219)
.+.+..+-.|..+. .-+.+.++.....+.+.. |+++|.-|-...+++ |.++...-..+..
T Consensus 168 k~~~~el~l~~~~~~~~~~~nkv~qeDaN~LikkI~~---DilYLDpPYN~rqYs~nYhLLe~IA~y~kP~~~gk~~~~d 244 (330)
T COG3392 168 KSAEKELELKLPDFDLNLNANKVYQEDANELIKKISG---DILYLDPPYNARQYSANYHLLETIARYEKPEPKGKTGLID 244 (330)
T ss_pred HhhhhheecccCCccccccchHHHHhhHHHHHHhcCC---CEEEeCCCccccccchHHHHHHHHHhcCCcccccccCCCC
Confidence 34455566666443 345677888888888863 999999887665543 1111111000000
Q ss_pred --ccccccccHHHHHHHHHHHHHcCCccEEEecC-------HHHHHHHHhc-CCceeeeeecCcc
Q 027753 130 --LEIDTTISLETTWHAMEDLVSMGLVRSIGIRL-------NFVCVHCLVY-IIPAFLFKLSFPL 184 (219)
Q Consensus 130 --~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-------~~~l~~~~~~-~~p~v~q~~~~~~ 184 (219)
.+...-+....+-+++++|...-+.|+|=+|- .+.+.++++. ....+....|..+
T Consensus 245 ~~~~KSsfcs~~~a~~af~eLI~d~k~kyIlLSYNneg~~s~e~i~eiL~k~G~~~ife~~Y~~F 309 (330)
T COG3392 245 YSWQKSSFCSRKQATQAFEELISDAKFKYILLSYNNEGLMSEEEILEILEKYGKYSIFETTYKRF 309 (330)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhcCccEEEEecCccccccHHHHHHHHHhcCcEEEehhHHHHH
Confidence 00111123445778999999999999999994 6777777777 6677777766655
No 94
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=36.84 E-value=71 Score=23.02 Aligned_cols=42 Identities=7% Similarity=-0.080 Sum_probs=36.5
Q ss_pred cCCchhHHHHHHHHHHhCCceeecCcccC-CHHHHHHHHHHHh
Q 027753 20 RMDESNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAF 61 (219)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~vg~al~~~~ 61 (219)
+++.+.-.+++...++.|.+.-+.|..|| +...+..|.+++.
T Consensus 12 ~ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl~~W~r~y~ 54 (121)
T PRK09413 12 RRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQ 54 (121)
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHh
Confidence 34667677889999999999999999999 8999999999863
No 95
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=36.77 E-value=3e+02 Score=24.33 Aligned_cols=69 Identities=14% Similarity=0.080 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCccEEEecC--HHHHHHHHhc-CCceeeeeecCcchh-hhHHHHHHHHHhcCceEEecCcc
Q 027753 141 TWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVY-IIPAFLFKLSFPLAV-IVEKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~-~~p~v~q~~~~~~~~-~~~~~l~~~~~~~gi~i~~~sp~ 209 (219)
++..+..+.+.+-++.+-+.. .+.++++++. .+..++....||... ..-+.+.++|+++|+.++.=..|
T Consensus 112 t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~ 184 (405)
T PRK08776 112 SWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTF 184 (405)
T ss_pred HHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCC
Confidence 555555554545455555543 7777777653 333444445555532 23578999999999988875544
No 96
>PRK07328 histidinol-phosphatase; Provisional
Probab=36.60 E-value=2.4e+02 Score=23.22 Aligned_cols=176 Identities=14% Similarity=0.045 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHhCCceeecCcccCC---------------HHHHHHHHHHHhh-cCCCCCCcEEEEecCCCCCchHHHH
Q 027753 24 SNIRDLIINAIKIGYRHIDCAADYRN---------------EAEVGEALAEAFS-TGLVKREDLFITTKLWNSDHGHVLE 87 (219)
Q Consensus 24 ~~~~~~l~~A~~~Gi~~~Dta~~Yg~---------------e~~vg~al~~~~~-~~~~~R~~~~I~tK~~~~~~~~i~~ 87 (219)
....+.+..|.+.|+..+=.+.+... ..-+-..++...+ +.+..+=++++-.-+... + .-..
T Consensus 18 ~~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~~~~-~-~~~~ 95 (269)
T PRK07328 18 GTPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEADYH-P-GTEE 95 (269)
T ss_pred CCHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEeccc-C-CcHH
Confidence 45788999999999998866655321 1112222222100 000111133333222211 2 2234
Q ss_pred HHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC-H----
Q 027753 88 ACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL-N---- 162 (219)
Q Consensus 88 ~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~---- 162 (219)
.+++.|+.-..||+ +.-+|+.....- ..... ...-...+....+..-++.+.++++.|.+.-+|=-. .
T Consensus 96 ~~~~~l~~~~~D~v-igSvH~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~i~~~~ 168 (269)
T PRK07328 96 FLERLLEAYPFDYV-IGSVHYLGAWGF-----DNPDF-VAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPDLIKKFG 168 (269)
T ss_pred HHHHHHHhCCCCeE-EEEEeecCCcCC-----CChhH-HHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHHcC
Confidence 45556666666776 677798642100 00000 000000111111233344577788888866665433 1
Q ss_pred --------HHHHHHHhc--CCceeeeeecCcch-----hhhHHHHHHHHHhcCceEEecCc
Q 027753 163 --------FVCVHCLVY--IIPAFLFKLSFPLA-----VIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 163 --------~~l~~~~~~--~~p~v~q~~~~~~~-----~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
+.++++++. ..-.+..++.+.+. .-+...+++.|++.|+.++..|-
T Consensus 169 ~~~~~~~~~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~itigSD 229 (269)
T PRK07328 169 HRPREDLTELYEEALDVIAAAGLALEVNTAGLRKPVGEIYPSPALLRACRERGIPVVLGSD 229 (269)
T ss_pred CCCchhHHHHHHHHHHHHHHcCCEEEEEchhhcCCCCCCCCCHHHHHHHHHcCCCEEEeCC
Confidence 222333333 22233333333221 12246799999999998876654
No 97
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=36.48 E-value=2.3e+02 Score=22.98 Aligned_cols=80 Identities=6% Similarity=-0.017 Sum_probs=49.2
Q ss_pred cceeccccCCchhHHHHHHHHHHhCCceeecCcccC----CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHH
Q 027753 13 IIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR----NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEA 88 (219)
Q Consensus 13 ~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg----~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~ 88 (219)
.+.+=+..+++++..++.+.+.++|..|+=|+..|+ +.+.+....+.. +.++-|-.=-+-.+.+...+-
T Consensus 125 KvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~-------~~~~~IKasGGIrt~~~a~~~ 197 (221)
T PRK00507 125 KVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETV-------GPRVGVKASGGIRTLEDALAM 197 (221)
T ss_pred EEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh-------CCCceEEeeCCcCCHHHHHHH
Confidence 344455567888999999999999999999999884 344444333331 222222221233456666666
Q ss_pred HHHHHHHhCCC
Q 027753 89 CKDSLKKLQLD 99 (219)
Q Consensus 89 ~~~sl~~Lg~d 99 (219)
++.--.++|+.
T Consensus 198 i~aGA~riGtS 208 (221)
T PRK00507 198 IEAGATRLGTS 208 (221)
T ss_pred HHcCcceEccC
Confidence 66555566654
No 98
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=36.27 E-value=2.5e+02 Score=23.36 Aligned_cols=164 Identities=11% Similarity=0.026 Sum_probs=87.9
Q ss_pred CchhHHHHHHHHHHhCCceeecC----------cccC-CHHHHHHHHHHHhhcCCCCCC-cEEEEecCCCCCchHHHHHH
Q 027753 22 DESNIRDLIINAIKIGYRHIDCA----------ADYR-NEAEVGEALAEAFSTGLVKRE-DLFITTKLWNSDHGHVLEAC 89 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dta----------~~Yg-~e~~vg~al~~~~~~~~~~R~-~~~I~tK~~~~~~~~i~~~~ 89 (219)
+.++..++.+.+.+.|+..||.- ..|+ +.+.+.+.++.. .+. ++-|..|+.+.. +.+. .+
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~v------r~~~~~Pv~vKl~~~~-~~~~-~~ 171 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAV------KKATDVPVIVKLTPNV-TDIV-EI 171 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHH------HhccCCCEEEEeCCCc-hhHH-HH
Confidence 45677888888888999999862 2233 455565666553 111 566888885442 2232 33
Q ss_pred HHHHHHhCCCcccEEEe-ecC--CCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC---HH
Q 027753 90 KDSLKKLQLDYLDLYLV-HFP--VATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL---NF 163 (219)
Q Consensus 90 ~~sl~~Lg~d~lDl~~l-h~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~---~~ 163 (219)
-+.+...|+|.+++.-- +.. +.... ....... .+....+.. ..-.++.+.++++.=.+.-||... ++
T Consensus 172 a~~~~~~G~d~i~~~nt~~g~~~~~~~~----~~~~~~~-~gg~sg~~~--~~~~~~~i~~i~~~~~ipii~~GGI~~~~ 244 (296)
T cd04740 172 ARAAEEAGADGLTLINTLKGMAIDIETR----KPILGNV-TGGLSGPAI--KPIALRMVYQVYKAVEIPIIGVGGIASGE 244 (296)
T ss_pred HHHHHHcCCCEEEEECCCcccccccccC----ceeecCC-cceecCccc--chHHHHHHHHHHHhcCCCEEEECCCCCHH
Confidence 44567788777765310 000 00000 0000000 000000000 112566677777765678888777 88
Q ss_pred HHHHHHhcCCceeeeeec----Ccc-hhhhHHHHHHHHHhcCc
Q 027753 164 VCVHCLVYIIPAFLFKLS----FPL-AVIVEKTLDQWQVDTSL 201 (219)
Q Consensus 164 ~l~~~~~~~~p~v~q~~~----~~~-~~~~~~~l~~~~~~~gi 201 (219)
++.+++... -+.+|+.- .|. -+...+++.++.+++|.
T Consensus 245 da~~~l~~G-Ad~V~igra~l~~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 245 DALEFLMAG-ASAVQVGTANFVDPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHHHcC-CCEEEEchhhhcChHHHHHHHHHHHHHHHHcCC
Confidence 888888763 24444332 222 13456888888888885
No 99
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=36.25 E-value=1e+02 Score=21.45 Aligned_cols=47 Identities=4% Similarity=-0.161 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcCceEEecCc
Q 027753 162 NFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 162 ~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
...+.++++.....++|.....+. -..-..+.+.|+++|+.++..+.
T Consensus 7 ~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~ 54 (111)
T PF13378_consen 7 LHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM 54 (111)
T ss_dssp HHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS
T ss_pred HHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC
Confidence 455666666655567776644332 23357788888888888888875
No 100
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=36.21 E-value=2.4e+02 Score=23.13 Aligned_cols=103 Identities=5% Similarity=-0.202 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHc-CCccEEEec--
Q 027753 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSM-GLVRSIGIR-- 160 (219)
Q Consensus 84 ~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvS-- 160 (219)
..+.++-+.|.++|++++++-+....... +. +. ..+ ..+.|+.++.+++. +.++...++
T Consensus 22 ~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~-------~~---~~-----~~~---~~~~~e~i~~~~~~~~~~~~~~~~~~ 83 (263)
T cd07943 22 EQVRAIARALDAAGVPLIEVGHGDGLGGS-------SL---NY-----GFA---AHTDEEYLEAAAEALKQAKLGVLLLP 83 (263)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCc-------cc---cc-----CCC---CCChHHHHHHHHHhccCCEEEEEecC
Confidence 34455666799999999999865322110 00 00 000 11245555555442 346655553
Q ss_pred ---CHHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 161 ---LNFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 161 ---~~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
+.+.++.+.+. ....+.+..+.-....-...+++++++|+.+..
T Consensus 84 ~~~~~~~i~~a~~~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~ 130 (263)
T cd07943 84 GIGTVDDLKMAADL-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVG 130 (263)
T ss_pred CccCHHHHHHHHHc-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEE
Confidence 26666666654 122233222211112245677888888876543
No 101
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=35.77 E-value=52 Score=23.53 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=23.7
Q ss_pred CchhHHHHHHHHHHhCCceeecCcccC
Q 027753 22 DESNIRDLIINAIKIGYRHIDCAADYR 48 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg 48 (219)
+...+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 567788889999999999999999984
No 102
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=35.55 E-value=2.2e+02 Score=22.41 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=46.1
Q ss_pred eeccccCCchhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHH
Q 027753 15 GLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKD 91 (219)
Q Consensus 15 glG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~ 91 (219)
.+.+..+++++...+.+.|.++|..++=|+..|. .-..--+.|++.++ .+-.+.++- +..+.+...+-++-
T Consensus 122 I~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~v~ik~aG--Gikt~~~~l~~~~~ 195 (203)
T cd00959 122 ILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GRVGVKAAG--GIRTLEDALAMIEA 195 (203)
T ss_pred EEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CCceEEEeC--CCCCHHHHHHHHHh
Confidence 3555556778899999999999999999997775 11111233444311 111222221 23356666666666
Q ss_pred HHHHhCC
Q 027753 92 SLKKLQL 98 (219)
Q Consensus 92 sl~~Lg~ 98 (219)
-..|+|+
T Consensus 196 g~~riG~ 202 (203)
T cd00959 196 GATRIGT 202 (203)
T ss_pred ChhhccC
Confidence 5666664
No 103
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=35.46 E-value=3.2e+02 Score=24.23 Aligned_cols=84 Identities=10% Similarity=0.169 Sum_probs=48.2
Q ss_pred ceeccccCCchhHHHHHHHHHHhCCceeecCcccCCHHHHHHHHHHHhhcCCCCCCcEE----EEecCCCC---------
Q 027753 14 IGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLF----ITTKLWNS--------- 80 (219)
Q Consensus 14 lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~~~~~~~~R~~~~----I~tK~~~~--------- 80 (219)
+.|++|.+++....+++.+|- .+| |.-++.+-..+... .+|..+| |+..-..+
T Consensus 137 ~v~~GWDIs~~nL~eAM~Rak-----Vld----~~LQ~ql~p~me~~-----~PlPsIy~PdFIAaNQ~~RAnnvI~g~~ 202 (512)
T KOG0693|consen 137 LVFSGWDISDMNLAEAMARAK-----VLD----IDLQKQLRPFMENL-----VPLPSIYDPDFIAANQGSRANNVIKGTK 202 (512)
T ss_pred eEEccccCCCCcHHHHHhhhh-----ccC----HHHHHHHHHHHhhc-----cCCCcccCcchhhcCccccccccccCch
Confidence 678889888877777777772 333 22233333333322 3555544 33332211
Q ss_pred --CchHHHHHHHHHHHHhCCCcccEEEeecCCC
Q 027753 81 --DHGHVLEACKDSLKKLQLDYLDLYLVHFPVA 111 (219)
Q Consensus 81 --~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~ 111 (219)
-.++|++.+++-.++-++|.+=+++-.+-+.
T Consensus 203 keqle~Ir~Dir~Fke~~~ldkViVLWTANTER 235 (512)
T KOG0693|consen 203 KEQLEQIRKDIREFKEENKLDKVIVLWTANTER 235 (512)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEEecCcce
Confidence 1467888888888888877776666555433
No 104
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=35.27 E-value=3e+02 Score=23.95 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCC-ccEEEecC--
Q 027753 85 VLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL-VRSIGIRL-- 161 (219)
Q Consensus 85 i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~-- 161 (219)
-+..+-+.|.++|+++|++- +|... +.-|+.+..+.+.+. .+..+++.
T Consensus 24 ~k~~ia~~L~~~Gv~~IEvG---~p~~~--------------------------~~~~e~i~~i~~~~~~~~i~~~~r~~ 74 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEVG---IPAMG--------------------------EEERAVIRAIVALGLPARLMAWCRAR 74 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEe---CCCCC--------------------------HHHHHHHHHHHHcCCCcEEEEEcCCC
Confidence 34556677999999999985 33221 224666777776643 66677675
Q ss_pred HHHHHHHHhcCCcee-eeeecCcchhh------------hHHHHHHHHHhcCceEE
Q 027753 162 NFVCVHCLVYIIPAF-LFKLSFPLAVI------------VEKTLDQWQVDTSLKLM 204 (219)
Q Consensus 162 ~~~l~~~~~~~~p~v-~q~~~~~~~~~------------~~~~l~~~~~~~gi~i~ 204 (219)
.+.++.+++.....+ .....+..... .-.+.+++++++|+.+.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 777877776522221 22223322110 01367889999998754
No 105
>PRK10206 putative oxidoreductase; Provisional
Probab=35.02 E-value=1.8e+02 Score=24.97 Aligned_cols=61 Identities=11% Similarity=0.001 Sum_probs=42.4
Q ss_pred HHHHHHHcCCccEEEecC-----HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 144 AMEDLVSMGLVRSIGIRL-----NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 144 ~l~~l~~~G~ir~iGvS~-----~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
.+++|.++..|..+=|++ .+...++++..+..+++.+... +...-++|++.|+++|+.++.
T Consensus 55 ~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~-~~~ea~~l~~~a~~~~~~l~v 120 (344)
T PRK10206 55 DLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTP-TLAEAKELFALAKSKGLTVTP 120 (344)
T ss_pred CHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcCCcEEEecCCcC-CHHHHHHHHHHHHHhCCEEEE
Confidence 345666777788888887 5555566666777777766543 224458889999999987765
No 106
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=34.13 E-value=1.7e+02 Score=25.95 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHhhcCCCCCCcEEEEecCCC------------CC----chHHHHHHHHHHHHhCCCcccEEEeecCCCC
Q 027753 49 NEAEVGEALAEAFSTGLVKREDLFITTKLWN------------SD----HGHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (219)
Q Consensus 49 ~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~------------~~----~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~ 112 (219)
++..+.+.+++. .+.=+||-||+.. .+ .+.|++.+.+.|++-|+...-+|++-+.+..
T Consensus 129 ndv~La~~i~~~------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 129 NDVQLAKEIQRM------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp HHHHHHHHHHHT------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTT
T ss_pred hhHHHHHHHHHc------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcc
Confidence 577778888873 3445667899821 11 3578899999999999999999999886544
No 107
>PRK11579 putative oxidoreductase; Provisional
Probab=33.99 E-value=2e+02 Score=24.61 Aligned_cols=61 Identities=13% Similarity=-0.088 Sum_probs=42.1
Q ss_pred HHHHHHHcCCccEEEecC-----HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 144 AMEDLVSMGLVRSIGIRL-----NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 144 ~l~~l~~~G~ir~iGvS~-----~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
.+++|.++..|..+=|++ .+....+++..+..+++.+.-. +....+.|++.|+++|+.++.
T Consensus 55 ~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~-t~~ea~~l~~~a~~~g~~l~v 120 (346)
T PRK11579 55 EPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTV-TLSQARELDALAKSAGRVLSV 120 (346)
T ss_pred CHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCCC-CHHHHHHHHHHHHHhCCEEEE
Confidence 345677777888888887 5666666766677777666432 223357889999999987754
No 108
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=33.19 E-value=1.7e+02 Score=20.39 Aligned_cols=71 Identities=13% Similarity=0.010 Sum_probs=44.0
Q ss_pred HHHHHHHHHHcCC-ccEEEecC-HHHHHHHHhcCCceeeeeec-CcchhhhHHHHHHHHHhc--CceEEecCcccc
Q 027753 141 TWHAMEDLVSMGL-VRSIGIRL-NFVCVHCLVYIIPAFLFKLS-FPLAVIVEKTLDQWQVDT--SLKLMRGSQFFC 211 (219)
Q Consensus 141 ~~~~l~~l~~~G~-ir~iGvS~-~~~l~~~~~~~~p~v~q~~~-~~~~~~~~~~l~~~~~~~--gi~i~~~sp~~~ 211 (219)
.......|++.|. +..++... .+.+.+.+....|.++-+-. ...+...-..+.+..++. ++.++...|...
T Consensus 17 l~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~t 92 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHAT 92 (121)
T ss_dssp HHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSSG
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCchh
Confidence 3344445666676 77777776 77777766665565554443 333333456777777766 778888777643
No 109
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=33.04 E-value=3.3e+02 Score=23.63 Aligned_cols=68 Identities=9% Similarity=-0.025 Sum_probs=45.5
Q ss_pred HHHHHHHHHHcCCcc-EEEecC--HHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcCceEEecCc
Q 027753 141 TWHAMEDLVSMGLVR-SIGIRL--NFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir-~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
.+..+.+|++...+. ..|=|- ..++.++++.....++|.....+. -..-..+...|+.+|+.++..+.
T Consensus 226 d~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~ 297 (368)
T TIGR02534 226 NREALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTM 297 (368)
T ss_pred cHHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecc
Confidence 466777787776554 444333 677777777655667777654432 23357889999999999987653
No 110
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=32.94 E-value=73 Score=23.32 Aligned_cols=58 Identities=10% Similarity=-0.170 Sum_probs=40.8
Q ss_pred cCCccEEEecC-----HHHHHHHHhc-CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCcc
Q 027753 151 MGLVRSIGIRL-----NFVCVHCLVY-IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 151 ~G~ir~iGvS~-----~~~l~~~~~~-~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~ 209 (219)
+| |.-|-+++ ++.+++.++. ..+.++-+..-.-.+.....+...|+.+||.+-.+|--
T Consensus 42 dg-v~~W~v~~~~~Lt~e~f~~vl~~a~~~EilliGTG~~~rf~p~~l~aal~~~gIsve~Mst~ 105 (127)
T COG3737 42 DG-VCDWEVATLSDLTPEDFERVLAEAPDVEILLIGTGARLRFPPPKLRAALKAAGISVEPMSTG 105 (127)
T ss_pred Cc-cccccccChhhCCHHHHHHHHhcCCCceEEEEecCccccCCCHHHHHHHHHcCCccccccch
Confidence 44 66777776 7778887776 55566655544444566788999999999988776653
No 111
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=32.89 E-value=3e+02 Score=23.20 Aligned_cols=90 Identities=11% Similarity=0.065 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcC----CccEEEe
Q 027753 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMG----LVRSIGI 159 (219)
Q Consensus 84 ~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G----~ir~iGv 159 (219)
.-+-.+-+.|..+|+++|.+-+ |... .+-.+.+..+.+.| .++..++
T Consensus 23 ~~Ki~ia~~L~~~Gv~~IE~gf---P~~~--------------------------~~e~e~~~~i~~~~~~~~~~~~~al 73 (284)
T cd07942 23 EQKLRFFKLLVKIGFKEIEVGF---PSAS--------------------------QTDFDFVRELIEEDLIPDDVTIQVL 73 (284)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC---CCCC--------------------------HHHHHHHHHHHHccCCCCCCEEEEE
Confidence 3455677789999999999873 5432 12345556665554 3677787
Q ss_pred cC--HHHHHHHHhc---CC-ceee-eeecCcchhh------------hHHHHHHHHHhcCce
Q 027753 160 RL--NFVCVHCLVY---II-PAFL-FKLSFPLAVI------------VEKTLDQWQVDTSLK 202 (219)
Q Consensus 160 S~--~~~l~~~~~~---~~-p~v~-q~~~~~~~~~------------~~~~l~~~~~~~gi~ 202 (219)
+. ...++.+++. .. +.+. ....+..... .-.+++++++++|+.
T Consensus 74 ~r~~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~ 135 (284)
T cd07942 74 TQAREDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAK 135 (284)
T ss_pred cCCChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccc
Confidence 76 5557777765 11 1222 2223322210 015678899999875
No 112
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=32.87 E-value=2.6e+02 Score=24.42 Aligned_cols=73 Identities=8% Similarity=-0.020 Sum_probs=44.7
Q ss_pred cHHHHHHHHHHHHH-cCC---ccEE---EecC-HHHHHHHHhc---CCceeeeeecCcchh-----hhH---HHHHHHHH
Q 027753 137 SLETTWHAMEDLVS-MGL---VRSI---GIRL-NFVCVHCLVY---IIPAFLFKLSFPLAV-----IVE---KTLDQWQV 197 (219)
Q Consensus 137 ~~~~~~~~l~~l~~-~G~---ir~i---GvS~-~~~l~~~~~~---~~p~v~q~~~~~~~~-----~~~---~~l~~~~~ 197 (219)
+++++++++.+..+ .|. |+++ |+.. .+++.++.+. .+..|+-++|+++.. ... +.+.++.+
T Consensus 240 ~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~ 319 (355)
T TIGR00048 240 NIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNPFPEADYERPSNEQIDRFAKTLM 319 (355)
T ss_pred CHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEecccCCCCCCCCCCHHHHHHHHHHHH
Confidence 36778888876544 443 4444 4443 5555555443 556888888887631 112 34566677
Q ss_pred hcCceEEecCcc
Q 027753 198 DTSLKLMRGSQF 209 (219)
Q Consensus 198 ~~gi~i~~~sp~ 209 (219)
++|+.+......
T Consensus 320 ~~gi~v~iR~~~ 331 (355)
T TIGR00048 320 SYGFTVTIRKSR 331 (355)
T ss_pred HCCCeEEEeCCC
Confidence 889999876553
No 113
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=32.81 E-value=1.5e+02 Score=23.28 Aligned_cols=12 Identities=8% Similarity=0.421 Sum_probs=9.7
Q ss_pred HcCCccEEEecC
Q 027753 150 SMGLVRSIGIRL 161 (219)
Q Consensus 150 ~~G~ir~iGvS~ 161 (219)
....++.+|++.
T Consensus 96 ~~~~i~~i~~~~ 107 (203)
T cd00405 96 GLPVIKAIRVKD 107 (203)
T ss_pred CCcEEEEEecCC
Confidence 346789999998
No 114
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=32.77 E-value=2.8e+02 Score=22.78 Aligned_cols=103 Identities=13% Similarity=-0.003 Sum_probs=60.6
Q ss_pred CchHHHHHHHHHHHHhCCCcccEEEe-ecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEe
Q 027753 81 DHGHVLEACKDSLKKLQLDYLDLYLV-HFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGI 159 (219)
Q Consensus 81 ~~~~i~~~~~~sl~~Lg~d~lDl~~l-h~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGv 159 (219)
+.+.+.+..++.+ .-|.|.||+-.- -+|... ..+.....+.....++.+++.-.+ -+.|
T Consensus 22 ~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~------------------~~~~~~E~~rl~~~v~~l~~~~~~-piSI 81 (258)
T cd00423 22 SLDKALEHARRMV-EEGADIIDIGGESTRPGAE------------------PVSVEEELERVIPVLRALAGEPDV-PISV 81 (258)
T ss_pred CHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCC------------------cCCHHHHHHHHHHHHHHHHhcCCC-eEEE
Confidence 3444444444433 468899998632 223211 122223345566667777665222 2555
Q ss_pred cC--HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEecC
Q 027753 160 RL--NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGS 207 (219)
Q Consensus 160 S~--~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~s 207 (219)
-+ ++.++.+++...+.+|-+..... ...+++.++++|.+++...
T Consensus 82 DT~~~~v~~aaL~~g~~iINdis~~~~----~~~~~~l~~~~~~~vV~m~ 127 (258)
T cd00423 82 DTFNAEVAEAALKAGADIINDVSGGRG----DPEMAPLAAEYGAPVVLMH 127 (258)
T ss_pred eCCcHHHHHHHHHhCCCEEEeCCCCCC----ChHHHHHHHHcCCCEEEEC
Confidence 55 99999999876666665543211 2678899999998887753
No 115
>PRK05588 histidinol-phosphatase; Provisional
Probab=32.22 E-value=2.8e+02 Score=22.59 Aligned_cols=81 Identities=17% Similarity=0.259 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHHhCCceeecCcccCC----H----HHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHH
Q 027753 23 ESNIRDLIINAIKIGYRHIDCAADYRN----E----AEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLK 94 (219)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~----e----~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~ 94 (219)
.....+.++.|.+.|+..+ .+.+... . ..+-+.+++. ++ .+..++.+-.-+.. .++ .....++.|+
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i-~~--~~~~~I~~GiE~~~-~~~-~~~~~~~~l~ 88 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKY-SK--YRNNKLLLGIELGM-EKD-LIEENKELIN 88 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHH-HH--HhcCCcceEEEecc-cCC-CHHHHHHHHh
Confidence 3457899999999999988 7766310 0 0111222211 00 12234544444422 233 3555677777
Q ss_pred HhCCCcccEEEeecCC
Q 027753 95 KLQLDYLDLYLVHFPV 110 (219)
Q Consensus 95 ~Lg~d~lDl~~lh~p~ 110 (219)
....|++ +.-+|+..
T Consensus 89 ~~~~D~v-igSvH~~~ 103 (255)
T PRK05588 89 KYEFDYV-IGSIHLVD 103 (255)
T ss_pred hCCCCeE-EEeEEeeC
Confidence 7777777 67789854
No 116
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=32.16 E-value=3.8e+02 Score=24.11 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=39.1
Q ss_pred cccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC-CchHHHHHHHHHHHHhCCCcccEEEeecCCCC
Q 027753 45 ADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (219)
Q Consensus 45 ~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~-~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~ 112 (219)
-.||.++.+-+++++..++. +.+=++|.|-+-+. --+.+..-+++.-++.+ +.++.++.|...
T Consensus 101 vVfGg~~kL~~~I~e~~~~~--~P~~I~V~ttC~~~lIGdDi~~v~~e~~~~~~---~~vi~v~t~gf~ 164 (456)
T TIGR01283 101 VIFGGEKKLFHAIREIVERY--HPPAVFVYSTCVPGLIGDDLEAVCKAAAEKTG---IPVIPVDSEGFY 164 (456)
T ss_pred eEeCCHHHHHHHHHHHHHhC--CCCEEEEECCChHHHhcCCHHHHHHHHHHHhC---CCEEEEECCCCc
Confidence 35788888999999876664 45557777776433 22334444443333443 578888887643
No 117
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=32.03 E-value=4e+02 Score=24.31 Aligned_cols=21 Identities=5% Similarity=0.180 Sum_probs=16.2
Q ss_pred CchHHHHHHHHHHHHhCCCcc
Q 027753 81 DHGHVLEACKDSLKKLQLDYL 101 (219)
Q Consensus 81 ~~~~i~~~~~~sl~~Lg~d~l 101 (219)
+++.+.+.++...++.|+..+
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~ 243 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFF 243 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEE
Confidence 578888888888888886543
No 118
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=31.94 E-value=4.1e+02 Score=24.49 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhCCCcccEEE
Q 027753 84 HVLEACKDSLKKLQLDYLDLYL 105 (219)
Q Consensus 84 ~i~~~~~~sl~~Lg~d~lDl~~ 105 (219)
.-+..+-+.|.++|+++|.+-+
T Consensus 106 eeKi~Ia~~L~~~GVd~IEvG~ 127 (503)
T PLN03228 106 PQKLEIARQLAKLRVDIMEVGF 127 (503)
T ss_pred HHHHHHHHHHHHcCCCEEEEeC
Confidence 3455677789999999988854
No 119
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=31.72 E-value=2.3e+02 Score=22.29 Aligned_cols=68 Identities=16% Similarity=0.060 Sum_probs=43.3
Q ss_pred HHHHHHcCCccEEEecC--HHHHHHHHhcCCceeeeeecC-cchhhhHHHHHHHHHhcCceEEecCccccee
Q 027753 145 MEDLVSMGLVRSIGIRL--NFVCVHCLVYIIPAFLFKLSF-PLAVIVEKTLDQWQVDTSLKLMRGSQFFCLV 213 (219)
Q Consensus 145 l~~l~~~G~ir~iGvS~--~~~l~~~~~~~~p~v~q~~~~-~~~~~~~~~l~~~~~~~gi~i~~~sp~~~~~ 213 (219)
..+|.+.|.. .+-..- .+.+.++++...-.+.-.... +-.......+++.|++.||..+.+|.|..-.
T Consensus 37 ~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 37 AQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGADY 107 (233)
T ss_dssp HHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESSGT
T ss_pred hhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecccc
Confidence 4556677874 343333 888888887643333333322 3333456889999999999999999885443
No 120
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=31.62 E-value=77 Score=22.43 Aligned_cols=47 Identities=9% Similarity=-0.058 Sum_probs=31.8
Q ss_pred HHHHHHHHhc-CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCc
Q 027753 162 NFVCVHCLVY-IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 162 ~~~l~~~~~~-~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
.+.+..++.. .+|.++-+..=.-.....+++.++++++||.+.....
T Consensus 41 ~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T 88 (110)
T PF04430_consen 41 PEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDT 88 (110)
T ss_dssp THHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-H
T ss_pred HHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECH
Confidence 7777777776 6777776664322345578899999999999987654
No 121
>PRK06740 histidinol-phosphatase; Validated
Probab=31.41 E-value=3.4e+02 Score=23.36 Aligned_cols=115 Identities=13% Similarity=0.037 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC-----
Q 027753 87 EACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL----- 161 (219)
Q Consensus 87 ~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~----- 161 (219)
..+++.|+....||+ +.-+|+.+...- ........... .+.......-++.+.++.+.|.+..||=-.
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~---~~~~~~~~~~~---~~~~~~~~~Yf~~~~~~i~~~~fdvIgHpDlik~f 228 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGF---DNPDTKEYFEE---HDLYALYDTFFKTVECAIRSELFDIIAHLDNIKVF 228 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCC---CCccHHHHhcC---CCHHHHHHHHHHHHHHHHHcCCCCEeeCccHHHhc
Confidence 345556666677777 677898642100 00000000000 111122345667888888888876665332
Q ss_pred ---------HHHHHHHHhc-----CCceeeee-ec-Ccch-hhhHHHHHHHHHhcCceEEecCc
Q 027753 162 ---------NFVCVHCLVY-----IIPAFLFK-LS-FPLA-VIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 162 ---------~~~l~~~~~~-----~~p~v~q~-~~-~~~~-~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
...+.++++. ....+|-. .+ .+.. .-+...+++.|++.|+.++..|-
T Consensus 229 ~~~~~~~~~~~~~~~I~~a~~~~g~~lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~~tlgSD 292 (331)
T PRK06740 229 NYRLDENEQLSYYKEIARALVETNTATEINAGLYYRYPVREMCPSPLFLQVLAKHEVPITLSSD 292 (331)
T ss_pred CCCcchhhhHHHHHHHHHHHHHcCCEEEEECccccCCCCCCCCcCHHHHHHHHHCCCeEEEeeC
Confidence 1233333333 33344432 11 0111 11356789999999999877654
No 122
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=31.38 E-value=3e+02 Score=22.74 Aligned_cols=65 Identities=14% Similarity=-0.086 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHcCCccEEEecC--HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEec
Q 027753 137 SLETTWHAMEDLVSMGLVRSIGIRL--NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRG 206 (219)
Q Consensus 137 ~~~~~~~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~ 206 (219)
.++.....+..+++.-.+. +.|=+ ++.++.+++...+.+|-+.... . ...+++.++++|..++..
T Consensus 60 E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~iINdisg~~--~--~~~~~~l~~~~~~~vV~m 126 (257)
T cd00739 60 ELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGADIINDVSGGS--D--DPAMLEVAAEYGAPLVLM 126 (257)
T ss_pred HHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCCEEEeCCCCC--C--ChHHHHHHHHcCCCEEEE
Confidence 3444555566676652222 44444 9999999987656666544321 1 267899999999998874
No 123
>PF06819 Arc_PepC: Archaeal Peptidase A24 C-terminal Domain; InterPro: IPR009639 This region is of unknown function found at the C terminus of some archael proteins that have multiple transmembrane domains and are predicted to be aspartic peptidases belonging to the MEROPS peptidase subfamily A24A (type 4 prepilin peptidase 1.
Probab=31.37 E-value=1.8e+02 Score=20.96 Aligned_cols=70 Identities=16% Similarity=0.052 Sum_probs=40.1
Q ss_pred cCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHH
Q 027753 63 TGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTW 142 (219)
Q Consensus 63 ~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (219)
+|-+.|+.+++-.---..+...+..-+.+.++.-....+-=-.+-.|+... -.++..
T Consensus 36 EgdIL~e~I~~k~~~v~~d~~~~~~r~k~~l~~~~~~~l~g~~i~~~~~EG-----------------------Ls~E~I 92 (110)
T PF06819_consen 36 EGDILGEIIYEKDDGVYRDRSSFFKRFKFALKTEDGSALTGEKIISTDAEG-----------------------LSKEDI 92 (110)
T ss_pred ccceehheEEEeCCcEEEecccHHHHHHHHHHhcccccccCCeEEeccccC-----------------------CCHHHH
Confidence 354667766664332333456666667777765554544111122222211 136799
Q ss_pred HHHHHHHHcCCcc
Q 027753 143 HAMEDLVSMGLVR 155 (219)
Q Consensus 143 ~~l~~l~~~G~ir 155 (219)
+.|.+|+++||+.
T Consensus 93 E~Lk~Lv~eGKi~ 105 (110)
T PF06819_consen 93 EKLKKLVEEGKIE 105 (110)
T ss_pred HHHHHHHHcCCCc
Confidence 9999999999974
No 124
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=31.31 E-value=3.9e+02 Score=24.01 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCCcccEEEe-ecCCCCCCCCCCCcCCcCCCCCcc
Q 027753 52 EVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLV-HFPVATKHTGVGTTDSALDADGVL 130 (219)
Q Consensus 52 ~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d~lDl~~l-h~p~~~~~~~~~~~~~~~~~~~~~ 130 (219)
.+-++++...+.| +..=.+.+..-+...+.+.+.+.++..+ +|+.+.+.++.+ |.|..... ...-.+..+
T Consensus 189 ~~~~ai~~lr~~G-~~~v~~dli~GlPgqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~-------~~~~~~~~l 259 (453)
T PRK13347 189 MVARAVELLRAAG-FESINFDLIYGLPHQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKN-------QRLIDEAAL 259 (453)
T ss_pred HHHHHHHHHHhcC-CCcEEEeEEEeCCCCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhH-------HhcCCccCC
Confidence 3444555443333 2212334455555567788888777776 488899888866 33321100 000000000
Q ss_pred cccccccHHHHHHHHHHHHHcCCccEEEecC
Q 027753 131 EIDTTISLETTWHAMEDLVSMGLVRSIGIRL 161 (219)
Q Consensus 131 ~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 161 (219)
.+......-...+.+.|.+.|.. .+|+++
T Consensus 260 -p~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~ 288 (453)
T PRK13347 260 -PDAEERLRQARAVADRLLAAGYV-PIGLDH 288 (453)
T ss_pred -cCHHHHHHHHHHHHHHHHHCCCE-EEeccc
Confidence 11111122222456778888975 589999
No 125
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=31.13 E-value=3.8e+02 Score=23.80 Aligned_cols=76 Identities=13% Similarity=0.142 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHhCCceeecCcccCCHH---HHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCC
Q 027753 23 ESNIRDLIINAIKIGYRHIDCAADYRNEA---EVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLD 99 (219)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~---~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d 99 (219)
..+..++|+.+++.|+- .+.|++++ .+-.|.++.=.. .+..+.++.+ ..+...+...++.| |.
T Consensus 40 pp~i~~Al~~rvdhGvf----GY~~~~~~~~~ai~~w~~~r~~~-~i~~e~i~~~--------p~VVpgi~~~I~~~-T~ 105 (388)
T COG1168 40 PPEIIEALRERVDHGVF----GYPYGSDELYAAIAHWFKQRHQW-EIKPEWIVFV--------PGVVPGISLAIRAL-TK 105 (388)
T ss_pred CHHHHHHHHHHHhcCCC----CCCCCCHHHHHHHHHHHHHhcCC-CCCcceEEEc--------CcchHhHHHHHHHh-Cc
Confidence 46788999999999843 33344543 333444432011 1122333322 23455566666666 36
Q ss_pred cccEEEeecCCCC
Q 027753 100 YLDLYLVHFPVAT 112 (219)
Q Consensus 100 ~lDl~~lh~p~~~ 112 (219)
.=|-+.++.|...
T Consensus 106 ~gd~Vvi~tPvY~ 118 (388)
T COG1168 106 PGDGVVIQTPVYP 118 (388)
T ss_pred CCCeeEecCCCch
Confidence 6788888887653
No 126
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=30.79 E-value=2e+02 Score=22.64 Aligned_cols=41 Identities=10% Similarity=-0.052 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCccEEEecC---HHHHHHHHhcCCceeeeeecCc
Q 027753 143 HAMEDLVSMGLVRSIGIRL---NFVCVHCLVYIIPAFLFKLSFP 183 (219)
Q Consensus 143 ~~l~~l~~~G~ir~iGvS~---~~~l~~~~~~~~p~v~q~~~~~ 183 (219)
+...++.+.-..+.+||-- .+.+.++++...+.++|.+-..
T Consensus 38 ~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 38 DQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 4455666655555899986 7878888877889999988553
No 127
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=30.71 E-value=3.2e+02 Score=22.79 Aligned_cols=98 Identities=10% Similarity=-0.047 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC-H
Q 027753 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL-N 162 (219)
Q Consensus 84 ~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~ 162 (219)
.-+..+-+.|.++|+++|++-..-.|... +.....++..+.+.. ...++..+++. .
T Consensus 20 e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~--------------------p~~~d~~~~~~~l~~---~~~~~~~~~~~~~ 76 (274)
T cd07938 20 EDKIELIDALSAAGLRRIEVTSFVSPKWV--------------------PQMADAEEVLAGLPR---RPGVRYSALVPNL 76 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCCcccc--------------------cccCCHHHHHhhccc---CCCCEEEEECCCH
Confidence 45666777899999999999744333211 111112334444433 22466677666 7
Q ss_pred HHHHHHHhc-CCceeeeeecCcch------h------hhHHHHHHHHHhcCceEE
Q 027753 163 FVCVHCLVY-IIPAFLFKLSFPLA------V------IVEKTLDQWQVDTSLKLM 204 (219)
Q Consensus 163 ~~l~~~~~~-~~p~v~q~~~~~~~------~------~~~~~l~~~~~~~gi~i~ 204 (219)
+.++.+++. ..-.-.....+... . ......+++++++|+.+.
T Consensus 77 ~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~ 131 (274)
T cd07938 77 RGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVR 131 (274)
T ss_pred HHHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 788888876 22222222223211 0 112556899999999885
No 128
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=30.66 E-value=2.9e+02 Score=22.29 Aligned_cols=67 Identities=12% Similarity=0.008 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCccEEEecC---HHHHHHHHhc---CCceeeee-------------ecCcchhhhHHHHHHHHHhc
Q 027753 139 ETTWHAMEDLVSMGLVRSIGIRL---NFVCVHCLVY---IIPAFLFK-------------LSFPLAVIVEKTLDQWQVDT 199 (219)
Q Consensus 139 ~~~~~~l~~l~~~G~ir~iGvS~---~~~l~~~~~~---~~p~v~q~-------------~~~~~~~~~~~~l~~~~~~~ 199 (219)
.++.+++.+++++|. .+.+++ ...+...++. ..|.|... ..+++....-..++++++++
T Consensus 23 ~~~~~ai~~~~~~G~--~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~d~~~~~~l~~~~l~~~~~~~i~~~~~~~ 100 (272)
T PRK10530 23 PESLEALARAREAGY--KVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYQAKKVLEADPLPVQQALQVIEMLDEH 100 (272)
T ss_pred HHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEEecCCCEEEEecCCCHHHHHHHHHHHHhC
Confidence 457899999999997 577776 4445555444 22322211 11233333457889999999
Q ss_pred CceEEecC
Q 027753 200 SLKLMRGS 207 (219)
Q Consensus 200 gi~i~~~s 207 (219)
++.+..|.
T Consensus 101 ~~~~~~~~ 108 (272)
T PRK10530 101 QIHGLMYV 108 (272)
T ss_pred CcEEEEEc
Confidence 98776654
No 129
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=30.52 E-value=2e+02 Score=25.55 Aligned_cols=70 Identities=13% Similarity=0.009 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCCccEEEecC-HHHHHHHHhc-CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCccc
Q 027753 141 TWHAMEDLVSMGLVRSIGIRL-NFVCVHCLVY-IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQFF 210 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir~iGvS~-~~~l~~~~~~-~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~~ 210 (219)
.-..+..|.+.|.--..||.+ .+.--++.+. ..+++.+.+|+++....-+...+..++.++-|++--||+
T Consensus 279 ~~~~~~~L~~~g~~v~~g~l~~~d~d~~~a~~l~~~~~~~~pf~~i~~~~~~~a~~~~~~~~~vi~~~~~~g 350 (402)
T PRK09536 279 AARAVSRLVAAGASVSVGPVPEGDTAAETAARVGCEAVTVPPFKPIEDSTRAEATDLIIAADAVVAAGVAAA 350 (402)
T ss_pred HHHHHHHHHHCCCeEEEecCcCcchhHHHHHHcCCCEEeeCCCCCCCHHHHHHHHHHHHhCCEEEECCCccC
Confidence 446778899999999999999 3322233333 667888999999986666777888889999999888874
No 130
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=30.44 E-value=3.4e+02 Score=23.01 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=81.6
Q ss_pred CCchhHHHHHHHHHHhCCceeecCcccC-CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCC
Q 027753 21 MDESNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLD 99 (219)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d 99 (219)
++.++..+.++.+.+.|++.+.-+-.-. -...+-+.++...+.. .-.++.|+|.... +.+ .-+.|...|++
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~--~~~~i~itTNG~l-----l~~-~~~~L~~agl~ 120 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALP--GIRDLALTTNGYL-----LAR-RAAALKDAGLD 120 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcC--CCceEEEEcCchh-----HHH-HHHHHHHcCCC
Confidence 4567888899988899998876543111 1222344444431111 1235777776532 222 23345555665
Q ss_pred cccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCC----ccEEEecC--HHHHHHHHhc--
Q 027753 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL----VRSIGIRL--NFVCVHCLVY-- 171 (219)
Q Consensus 100 ~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~----ir~iGvS~--~~~l~~~~~~-- 171 (219)
.+- +-+|.++.... .. ......+++++++++.+++.|. +..+.+.+ .+++.++++.
T Consensus 121 ~i~-ISlds~~~e~~-------~~--------i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~ 184 (331)
T PRK00164 121 RVN-VSLDSLDPERF-------KA--------ITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAK 184 (331)
T ss_pred EEE-EEeccCCHHHh-------cc--------CCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHH
Confidence 443 33444432111 00 1111247889999999999886 22333322 3445544444
Q ss_pred -CCceeeeeecCcchh---------hhHHHHHHHHHhcCceE
Q 027753 172 -IIPAFLFKLSFPLAV---------IVEKTLDQWQVDTSLKL 203 (219)
Q Consensus 172 -~~p~v~q~~~~~~~~---------~~~~~l~~~~~~~gi~i 203 (219)
....+..+++.++.. ....++.+..+++|+.+
T Consensus 185 ~~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 226 (331)
T PRK00164 185 DRGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTL 226 (331)
T ss_pred hCCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcc
Confidence 333344444444321 12356778888776543
No 131
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=30.39 E-value=3.8e+02 Score=23.64 Aligned_cols=68 Identities=4% Similarity=0.026 Sum_probs=46.4
Q ss_pred HHHHHHHHHHcCCcc-EEEecC--HHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcCceEEecCc
Q 027753 141 TWHAMEDLVSMGLVR-SIGIRL--NFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir-~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
.++.+.+|++.-.+. ..|=|- ...+.++++.....++|.....+. -..-..+.+.|+.+|+.++.++.
T Consensus 245 d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~~ 316 (404)
T PRK15072 245 NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHGP 316 (404)
T ss_pred CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcCCceeeccC
Confidence 457777888876655 333332 778888877766677777655432 33357889999999999987643
No 132
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=30.31 E-value=3.7e+02 Score=23.37 Aligned_cols=29 Identities=10% Similarity=0.091 Sum_probs=21.1
Q ss_pred CCCCchHHHHHHHHHHHHhCCCcccEEEee
Q 027753 78 WNSDHGHVLEACKDSLKKLQLDYLDLYLVH 107 (219)
Q Consensus 78 ~~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh 107 (219)
...+.+.+++.++..+ +++.+++.++.+.
T Consensus 170 Pgqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 170 PGESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 4446777777777655 4899999888776
No 133
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=30.28 E-value=80 Score=29.35 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=25.3
Q ss_pred CCceeeeeecCcchhh-hHHHHHHHHHhcCceEE
Q 027753 172 IIPAFLFKLSFPLAVI-VEKTLDQWQVDTSLKLM 204 (219)
Q Consensus 172 ~~p~v~q~~~~~~~~~-~~~~l~~~~~~~gi~i~ 204 (219)
..|.|+-++-++.+.. .-+.+.++|+++|+.+.
T Consensus 372 GvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~va 405 (557)
T PRK13505 372 GVPVVVAINKFVTDTDAEIAALKELCEELGVEVA 405 (557)
T ss_pred CCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 5667776776677654 45778999999999987
No 134
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=30.22 E-value=2.4e+02 Score=25.34 Aligned_cols=66 Identities=11% Similarity=0.008 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCccEEEecC--HHHHHHHHhc-----C---CceeeeeecCcchhhhHHHHHHHHHhcCceEEecCcc
Q 027753 143 HAMEDLVSMGLVRSIGIRL--NFVCVHCLVY-----I---IPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 143 ~~l~~l~~~G~ir~iGvS~--~~~l~~~~~~-----~---~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp~ 209 (219)
+-...+-+.|-...+|..+ ++++++.++. . +..||-.. ++-....+..+++.|.++||.++.-|-|
T Consensus 29 eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~-~~~~~~~e~~~v~l~le~gV~~ve~sa~ 104 (418)
T cd04742 29 ELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLIH-SPDEPELEEGLVDLFLRHGVRVVEASAF 104 (418)
T ss_pred HHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeeec-CCCCchhHHHHHHHHHHcCCCEEEeccc
Confidence 3344577889999999877 7777766655 1 34555442 3322333678899999999998876654
No 135
>TIGR00044 pyridoxal phosphate enzyme, YggS family. Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae.
Probab=29.96 E-value=2.9e+02 Score=22.18 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCccEEEecC
Q 027753 143 HAMEDLVSMGLVRSIGIRL 161 (219)
Q Consensus 143 ~~l~~l~~~G~ir~iGvS~ 161 (219)
..+..+.+.| ++++|++.
T Consensus 41 ~~i~~l~~~G-~~~fg~~~ 58 (229)
T TIGR00044 41 SAIQIAYDAG-QRAFGENY 58 (229)
T ss_pred HHHHHHHHcC-CccccEEc
Confidence 4444566777 78888888
No 136
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.92 E-value=3.1e+02 Score=23.83 Aligned_cols=101 Identities=14% Similarity=-0.010 Sum_probs=58.2
Q ss_pred HHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecCHHHHHHHHh
Q 027753 91 DSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRLNFVCVHCLV 170 (219)
Q Consensus 91 ~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~l~~~~~ 170 (219)
+.|++||+.-=+-|.+-+|.+... .+.+.+......-+.+++|++.| .+=++..+...+..+
T Consensus 171 evlkeLgl~~~~~yIVmRpe~~~A---------------~y~~g~~~~~~~~~li~~l~k~g---iV~ipr~~~~~eife 232 (346)
T COG1817 171 EVLKELGLEEGETYIVMRPEPWGA---------------HYDNGDRGISVLPDLIKELKKYG---IVLIPREKEQAEIFE 232 (346)
T ss_pred HHHHHcCCCCCCceEEEeeccccc---------------eeeccccchhhHHHHHHHHHhCc---EEEecCchhHHHHHh
Confidence 557778876556676777765321 11222223444667888999999 344444222222222
Q ss_pred c------CCceee--eeecC-cchhhhHHHHHHHHHhcCceEEecCcc
Q 027753 171 Y------IIPAFL--FKLSF-PLAVIVEKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 171 ~------~~p~v~--q~~~~-~~~~~~~~~l~~~~~~~gi~i~~~sp~ 209 (219)
. +++.+. |..|+ .+--...-.+.+.|.-.|++.+.+.|-
T Consensus 233 ~~~n~i~pk~~vD~l~Llyya~lvig~ggTMarEaAlLGtpaIs~~pG 280 (346)
T COG1817 233 GYRNIIIPKKAVDTLSLLYYATLVIGAGGTMAREAALLGTPAISCYPG 280 (346)
T ss_pred hhccccCCcccccHHHHHhhhheeecCCchHHHHHHHhCCceEEecCC
Confidence 2 445555 23332 222233567889999999999998885
No 137
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=29.79 E-value=3.4e+02 Score=24.04 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=40.2
Q ss_pred HHHHHHH-HHHHcCCccEEEecC-HHHHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEec
Q 027753 140 TTWHAME-DLVSMGLVRSIGIRL-NFVCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRG 206 (219)
Q Consensus 140 ~~~~~l~-~l~~~G~ir~iGvS~-~~~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~ 206 (219)
+.+..|. +|.+.|.--.+-..+ .+.+.++++. +.-.+....+-+..+..++.+.++|+++||.+..+
T Consensus 61 esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~V~~~~~~~~~~~~rd~~v~~~l~~~~i~~~~~ 131 (429)
T TIGR02765 61 ESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRTVFLHQEVGSEEKSVERLLQQALARLGIHVEQH 131 (429)
T ss_pred HHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHHHHHHHHhcCceEEEe
Confidence 3333343 344445544444444 7777777776 33333344455555666888999999999987544
No 138
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=29.78 E-value=4.2e+02 Score=23.91 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=24.1
Q ss_pred CchhHHHHHHHHHHhCCcee---ecCcccCCHHHHHHHHHH
Q 027753 22 DESNIRDLIINAIKIGYRHI---DCAADYRNEAEVGEALAE 59 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~---Dta~~Yg~e~~vg~al~~ 59 (219)
+++-..+.+..|+++|+..| |.=..-.|-+.-.++.++
T Consensus 96 aDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk 136 (472)
T COG5016 96 ADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKK 136 (472)
T ss_pred chHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHh
Confidence 66777899999999998755 433333344434444444
No 139
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=29.71 E-value=1.6e+02 Score=22.58 Aligned_cols=67 Identities=9% Similarity=-0.110 Sum_probs=40.2
Q ss_pred cHHHHHHHHHHHHHcC-CccEEEecC----HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCc
Q 027753 137 SLETTWHAMEDLVSMG-LVRSIGIRL----NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 137 ~~~~~~~~l~~l~~~G-~ir~iGvS~----~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
+..|.+++|.++++.| +|-.+|..+ ...+.+++. ..+.+..++.. ..-...+..+++.|+.++....
T Consensus 62 s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~---~~i~~~~~~~~--~e~~~~i~~~~~~G~~viVGg~ 133 (176)
T PF06506_consen 62 SGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLG---VDIKIYPYDSE--EEIEAAIKQAKAEGVDVIVGGG 133 (176)
T ss_dssp -HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT----EEEEEEESSH--HHHHHHHHHHHHTT--EEEESH
T ss_pred CHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhC---CceEEEEECCH--HHHHHHHHHHHHcCCcEEECCH
Confidence 3567889998888766 566677777 556666654 24444444432 2245566777777777776654
No 140
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=29.41 E-value=34 Score=30.33 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=12.6
Q ss_pred hHHHHHHHHHhcCceE
Q 027753 188 VEKTLDQWQVDTSLKL 203 (219)
Q Consensus 188 ~~~~l~~~~~~~gi~i 203 (219)
..+.|.++|+++||..
T Consensus 77 ~~~~lr~~~ke~Gi~~ 92 (423)
T COG0065 77 QQKELRENAKEFGIVN 92 (423)
T ss_pred HHHHHHHHHHHhCCee
Confidence 3578899999999643
No 141
>PF04223 CitF: Citrate lyase, alpha subunit (CitF); InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis (Streptococcus lactis) has been experimentally characterised [].; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex; PDB: 2HJ0_B 1XR4_B.
Probab=29.00 E-value=4.2e+02 Score=23.96 Aligned_cols=93 Identities=14% Similarity=0.171 Sum_probs=59.3
Q ss_pred HHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccc
Q 027753 53 VGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEI 132 (219)
Q Consensus 53 vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~ 132 (219)
+-+|+++. | -++.+.|+.+-+-+.-+.+...+-+.+.+||.. |+-+..+.-
T Consensus 8 l~eAi~~~---g--lkDGMTISFHHH~RnGD~V~nmVm~~i~~mGiK--dLtiaaSSl---------------------- 58 (466)
T PF04223_consen 8 LEEAIEKS---G--LKDGMTISFHHHLRNGDYVLNMVMDEIAEMGIK--DLTIAASSL---------------------- 58 (466)
T ss_dssp HHHHHHHT---T----TT-EEEE--TTGGGB-HHHHHHHHHHHTT----SEEEEES------------------------
T ss_pred HHHHHHHc---C--CcCCcEEEeehhccCccHHHHHHHHHHHHcCCC--CcEEecccc----------------------
Confidence 45666664 5 788899999988888899999999999999965 443333321
Q ss_pred cccccHHHHHHHHHHHHHcCCccEEEecC-HHHHHHHHhc---CCceeeeee
Q 027753 133 DTTISLETTWHAMEDLVSMGLVRSIGIRL-NFVCVHCLVY---IIPAFLFKL 180 (219)
Q Consensus 133 ~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~~~l~~~~~~---~~p~v~q~~ 180 (219)
-..-+-|-+..++|.|..|=-|. .-.+-++++. ..|++.+.+
T Consensus 59 ------~~~h~~lv~~I~~GvVt~I~tsg~rG~lg~aiS~G~l~~Pvi~rSH 104 (466)
T PF04223_consen 59 ------FPVHDPLVEHIKSGVVTRIETSGMRGPLGEAISEGKLKKPVIIRSH 104 (466)
T ss_dssp -------GGGGGHHHHHHTTSEEEEEESEEHHHHHHHHHCT--SS-EEE-BH
T ss_pred ------hhhHHHHHHHHhcCeeeEEEeCCcCchHHHHHhCCCCCCCEEEeCC
Confidence 11334567889999999998887 6667777766 667766543
No 142
>PRK10799 metal-binding protein; Provisional
Probab=28.95 E-value=83 Score=25.82 Aligned_cols=31 Identities=23% Similarity=0.126 Sum_probs=19.2
Q ss_pred HHHHHHhCCceeecCcccCCHHHHHHHHHHHh
Q 027753 30 IINAIKIGYRHIDCAADYRNEAEVGEALAEAF 61 (219)
Q Consensus 30 l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~~ 61 (219)
...|.+.|++.+|.. ||.+|...-+.+.+.+
T Consensus 200 ~~~A~~~gl~li~~G-H~~sE~~~~~~la~~L 230 (247)
T PRK10799 200 IHSAREQGLHFYAAG-HHATERGGIRALSEWL 230 (247)
T ss_pred HHHHHHCCCeEEEcC-chHHHHHHHHHHHHHH
Confidence 456677788877754 5666666444454443
No 143
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.90 E-value=4.8e+02 Score=25.19 Aligned_cols=27 Identities=15% Similarity=-0.022 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHc--CCccEEEecC-HHHHH
Q 027753 140 TTWHAMEDLVSM--GLVRSIGIRL-NFVCV 166 (219)
Q Consensus 140 ~~~~~l~~l~~~--G~ir~iGvS~-~~~l~ 166 (219)
+.+++|-+..++ +.++.|.++| +..+.
T Consensus 139 ~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 139 HAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred HHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 467777777776 8899999999 55554
No 144
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=28.72 E-value=26 Score=22.61 Aligned_cols=41 Identities=7% Similarity=-0.014 Sum_probs=34.1
Q ss_pred CCchhHHHHHHHHHHhCCceeecCcccC-CHHHHHHHHHHHh
Q 027753 21 MDESNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAF 61 (219)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~vg~al~~~~ 61 (219)
++++.-.++|..++..|.+.-+.|..|| +...+..|++...
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~gi~~~~l~~W~~~~~ 48 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYGISPSTLYNWRKQYR 48 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHTS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeecccccccccccHHHHHHh
Confidence 3567778899999999999999999999 7999999999863
No 145
>PF11181 YflT: Heat induced stress protein YflT
Probab=28.68 E-value=1e+02 Score=21.43 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=24.7
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCcEEEEecC
Q 027753 47 YRNEAEVGEALAEAFSTGLVKREDLFITTKL 77 (219)
Q Consensus 47 Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~ 77 (219)
|-++..+-.++.++..+| ...++++|.+|-
T Consensus 6 ~~~~~E~~~~I~~L~~~G-y~~ddI~Vva~d 35 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQG-YSEDDIYVVAKD 35 (103)
T ss_pred ECCHHHHHHHHHHHHHcC-CCcccEEEEEcC
Confidence 457777888888888888 789999999984
No 146
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=28.55 E-value=1.7e+02 Score=24.40 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=40.9
Q ss_pred HcCCccEEEecCHHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEec
Q 027753 150 SMGLVRSIGIRLNFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRG 206 (219)
Q Consensus 150 ~~G~ir~iGvS~~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~ 206 (219)
+-+-++.-|.-..+.+.++++......+-=..||+.....+..++.|++.||+++.|
T Consensus 43 ~~~~~~~~G~l~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 43 QIGPVRVGGFLGAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred ccCCeeecCcCCHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 334455566655788888887744444444557887777888999999999999876
No 147
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=28.51 E-value=46 Score=24.71 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=12.6
Q ss_pred HHHHHHHHHhCCceeec
Q 027753 27 RDLIINAIKIGYRHIDC 43 (219)
Q Consensus 27 ~~~l~~A~~~Gi~~~Dt 43 (219)
...+..+++.|+|+||-
T Consensus 29 ~~~i~~QL~~GiR~lDl 45 (146)
T PF00388_consen 29 SWSIREQLESGIRYLDL 45 (146)
T ss_dssp SHHHHHHHHTT--EEEE
T ss_pred hHhHHHHHhccCceEEE
Confidence 45789999999999984
No 148
>PRK03995 hypothetical protein; Provisional
Probab=28.49 E-value=2.9e+02 Score=23.21 Aligned_cols=81 Identities=17% Similarity=0.202 Sum_probs=48.3
Q ss_pred CccccceeccccCCchhHHHHHHHHHHhCCceeecCcccC----CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchH
Q 027753 9 FKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR----NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGH 84 (219)
Q Consensus 9 ~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg----~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~ 84 (219)
-..+.||||+.-+.+ +.-+.|++.++.+=...+.|. ++..+-+++.+. . .+-+..+. -|...+..
T Consensus 180 ~~~~~iGiGGgHYap----r~T~~~l~~~~~~GHi~pky~l~~~~~~~i~~a~~ks---~--~~~~~~~i--d~K~~k~~ 248 (267)
T PRK03995 180 KFKPAIGIGGGHYAP----KFTKLALESEYCFGHIIPKYALDHLSEEVLIQAIEKS---T--PEIDRIVI--DWKGVKSE 248 (267)
T ss_pred CCCEEEEECCCCccH----HHHHHHhhCCeeEEeEccccchhcCCHHHHHHHHHhc---c--CCCCEEEE--ecCCCCHH
Confidence 345677888754443 234667777777667777775 455666666652 1 22222222 12334567
Q ss_pred HHHHHHHHHHHhCCCc
Q 027753 85 VLEACKDSLKKLQLDY 100 (219)
Q Consensus 85 i~~~~~~sl~~Lg~d~ 100 (219)
.++.+.+.|+.+|+..
T Consensus 249 ~r~~i~~~le~~gi~v 264 (267)
T PRK03995 249 DRERIIEFLEELGIEV 264 (267)
T ss_pred HHHHHHHHHHHCCCeE
Confidence 7888888888888654
No 149
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=28.47 E-value=1.5e+02 Score=24.48 Aligned_cols=54 Identities=13% Similarity=-0.025 Sum_probs=37.5
Q ss_pred ccEEEecCHHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEecC
Q 027753 154 VRSIGIRLNFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGS 207 (219)
Q Consensus 154 ir~iGvS~~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~s 207 (219)
|+.-++.+.+.+.+++....+..+-=..||+.....+...+.|++.||+++-|-
T Consensus 46 v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 46 VRVGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 333333346777777766444444444578887788889999999999998775
No 150
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=28.37 E-value=4e+02 Score=23.26 Aligned_cols=103 Identities=16% Similarity=0.108 Sum_probs=58.2
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC-CchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcC
Q 027753 46 DYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSAL 124 (219)
Q Consensus 46 ~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~-~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~ 124 (219)
.||.++.+-+++++..+.. ..+=++|.|-+-+. --+.+..-+++.-++.+ +.++.+|.|.....
T Consensus 68 V~Gg~~~L~~~i~~~~~~~--~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~~---~~vi~v~t~gf~g~---------- 132 (406)
T cd01967 68 VFGGEKKLKKAIKEAYERF--PPKAIFVYSTCPTGLIGDDIEAVAKEASKELG---IPVIPVNCEGFRGV---------- 132 (406)
T ss_pred eeCcHHHHHHHHHHHHHhC--CCCEEEEECCCchhhhccCHHHHHHHHHHhhC---CCEEEEeCCCeeCC----------
Confidence 4578888888888875544 34447777766433 22344444444334443 78888998765420
Q ss_pred CCCCcccccccccHHHHHHHHHHHH---------HcCCccEEEecC----HHHHHHHHhc
Q 027753 125 DADGVLEIDTTISLETTWHAMEDLV---------SMGLVRSIGIRL----NFVCVHCLVY 171 (219)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~l~---------~~G~ir~iGvS~----~~~l~~~~~~ 171 (219)
........++++|-+.. +++.|--||..+ ...+.++++.
T Consensus 133 --------~~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiig~~~~~~d~~el~~lL~~ 184 (406)
T cd01967 133 --------SQSLGHHIANDAILDHLVGTKEPEEKTPYDVNIIGEYNIGGDAWVIKPLLEE 184 (406)
T ss_pred --------cccHHHHHHHHHHHHHhcCCCCcCCCCCCeEEEEeccccchhHHHHHHHHHH
Confidence 11112344555544332 234566777665 4667777776
No 151
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=28.28 E-value=3.9e+02 Score=23.07 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=27.5
Q ss_pred ecCCCCccccceeccccCCchhHHHHHHHHHHhCCceeecC
Q 027753 4 TLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCA 44 (219)
Q Consensus 4 ~~~~g~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta 44 (219)
.++.|.+... |+++.++..++++...++|+..|+.+
T Consensus 10 TLRDG~q~~~-----~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 10 TLRDGMHAVR-----HQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CCCCcCcCCC-----CccCHHHHHHHHHHHHHcCCCEEEee
Confidence 3566666543 45567889999999999999999994
No 152
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=28.24 E-value=3.9e+02 Score=23.02 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCcc-EEEecC--HHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcCceEEecC
Q 027753 141 TWHAMEDLVSMGLVR-SIGIRL--NFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGS 207 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir-~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~s 207 (219)
.+..+.+|++..-+. +.|=|. ..++.++++.....++|.....+. -..-..+.+.|+++|+.++..+
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 567788888876554 222222 777777776555567777654442 3345788999999999998765
No 153
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=27.92 E-value=4e+02 Score=23.07 Aligned_cols=109 Identities=14% Similarity=0.077 Sum_probs=54.1
Q ss_pred CCchhHHHHHHHHHHhCCceeecCcccC-CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCC
Q 027753 21 MDESNIRDLIINAIKIGYRHIDCAADYR-NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLD 99 (219)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d 99 (219)
++.++..++++.+.+.|+..|..+-.-. -...+-+.++...+.+ -.+.|.|.....+.+. -+.|...|++
T Consensus 46 ~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~il~~~~~~g----~~~~i~TNG~ll~~~~-----~~~L~~~g~~ 116 (378)
T PRK05301 46 LSTEEWIRVLREARALGALQLHFSGGEPLLRKDLEELVAHARELG----LYTNLITSGVGLTEAR-----LAALKDAGLD 116 (378)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEECCccCCchhHHHHHHHHHHcC----CcEEEECCCccCCHHH-----HHHHHHcCCC
Confidence 4567788899999999988886542111 1111234444321112 1345666654444333 2345556655
Q ss_pred cccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCC
Q 027753 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL 153 (219)
Q Consensus 100 ~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 153 (219)
.+-+ -++.++...+ ... ......++.+.++++.|++.|.
T Consensus 117 ~v~i-Sldg~~~e~~-------d~i-------rg~~g~f~~~~~~i~~l~~~g~ 155 (378)
T PRK05301 117 HIQL-SFQDSDPELN-------DRL-------AGTKGAFAKKLAVARLVKAHGY 155 (378)
T ss_pred EEEE-EecCCCHHHH-------HHH-------cCCCchHHHHHHHHHHHHHCCC
Confidence 4322 2232221100 000 0011236778888888888875
No 154
>PRK14847 hypothetical protein; Provisional
Probab=27.76 E-value=4.1e+02 Score=23.10 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCC----ccEEEec
Q 027753 85 VLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL----VRSIGIR 160 (219)
Q Consensus 85 i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~----ir~iGvS 160 (219)
-+-.+.+.|.++|+|.|.+- +|... .+-.+++.++.+.++ ++-.+++
T Consensus 55 eKl~IA~~L~~lGVd~IEvG---~Pa~s--------------------------~~e~e~ir~I~~~~~~~~~~~i~~~~ 105 (333)
T PRK14847 55 RKLRLFEQLVAVGLKEIEVA---FPSAS--------------------------QTDFDFVRKLIDERRIPDDVTIEALT 105 (333)
T ss_pred HHHHHHHHHHHcCCCEEEee---CCCCC--------------------------HHHHHHHHHHHHhCCCCCCcEEEEEe
Confidence 35567778999998777654 44332 224566777777764 5666777
Q ss_pred C--HHHHHHHHhc---CCc--eeeeeecCcchhhh------------HHHHHHHHHhcCc---e---EEecCcc
Q 027753 161 L--NFVCVHCLVY---IIP--AFLFKLSFPLAVIV------------EKTLDQWQVDTSL---K---LMRGSQF 209 (219)
Q Consensus 161 ~--~~~l~~~~~~---~~p--~v~q~~~~~~~~~~------------~~~l~~~~~~~gi---~---i~~~sp~ 209 (219)
. .+.++..++. ... .-..+..|.++... -.+.+.++++++. + .+.|+|-
T Consensus 106 r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~E 179 (333)
T PRK14847 106 QSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPE 179 (333)
T ss_pred cCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeee
Confidence 6 7666666665 111 22233444443211 1556789999955 2 4777773
No 155
>PRK05939 hypothetical protein; Provisional
Probab=27.56 E-value=2.6e+02 Score=24.65 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=39.0
Q ss_pred HHHHcCC-ccEEEecCHHHHHHHHhc-CCceeeeeecCcchhh-hHHHHHHHHHhcCceEEecCcc
Q 027753 147 DLVSMGL-VRSIGIRLNFVCVHCLVY-IIPAFLFKLSFPLAVI-VEKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 147 ~l~~~G~-ir~iGvS~~~~l~~~~~~-~~p~v~q~~~~~~~~~-~~~~l~~~~~~~gi~i~~~sp~ 209 (219)
.+...|. ++.+-+.+.+.+++++.. .+..++....|+.... .-+.+.+.|+++|+.++.=..+
T Consensus 105 ~l~~~G~~v~~v~~~d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 105 TLRGLGVEVTMVDATDVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHHhcCCEEEEECCCCHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence 3445553 555555447778877754 3334444445554433 2478999999999998875544
No 156
>COG1795 Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion]
Probab=27.29 E-value=1.2e+02 Score=23.17 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCC---cEEEEecCC
Q 027753 49 NEAEVGEALAEAFSTGLVKRE---DLFITTKLW 78 (219)
Q Consensus 49 ~e~~vg~al~~~~~~~~~~R~---~~~I~tK~~ 78 (219)
++..+++|..+.+++|.++|+ +++|++-+|
T Consensus 83 aQ~AVAkAVadsveegiip~e~~dd~vvi~svf 115 (170)
T COG1795 83 AQAAVAKAVADSVEEGIIPREQADDVVVIVSVF 115 (170)
T ss_pred HHHHHHHHHHHHHHhcCCChhHhcCEEEEEEeE
Confidence 688999999999999988876 577766665
No 157
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=27.26 E-value=92 Score=25.08 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=46.2
Q ss_pred HHHHHHhCCc-----eeecCcccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCCcccEE
Q 027753 30 IINAIKIGYR-----HIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLY 104 (219)
Q Consensus 30 l~~A~~~Gi~-----~~Dta~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d~lDl~ 104 (219)
+..|.+.|.. |...|+-|-+-+...+..+.. +. +-.+.=+-+.+.+.+. +.++. -.+|++
T Consensus 15 a~~a~~~gad~iG~If~~~SpR~Vs~~~a~~i~~~v------~~--~~~VgVf~n~~~~~i~----~i~~~---~~ld~V 79 (208)
T COG0135 15 AKAAAKAGADYIGFIFVPKSPRYVSPEQAREIASAV------PK--VKVVGVFVNESIEEIL----EIAEE---LGLDAV 79 (208)
T ss_pred HHHHHHcCCCEEEEEEcCCCCCcCCHHHHHHHHHhC------CC--CCEEEEECCCCHHHHH----HHHHh---cCCCEE
Confidence 3444555444 334477776655555555542 22 1111111223333333 33333 458999
Q ss_pred EeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHc---CCccEEEecC
Q 027753 105 LVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSM---GLVRSIGIRL 161 (219)
Q Consensus 105 ~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---G~ir~iGvS~ 161 (219)
|||.... .+.+++|++. ..++++.++.
T Consensus 80 QlHG~e~------------------------------~~~~~~l~~~~~~~v~kai~v~~ 109 (208)
T COG0135 80 QLHGDED------------------------------PEYIDQLKEELGVPVIKAISVSE 109 (208)
T ss_pred EECCCCC------------------------------HHHHHHHHhhcCCceEEEEEeCC
Confidence 9998643 2444455554 5899999998
No 158
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=27.14 E-value=2.5e+02 Score=23.53 Aligned_cols=64 Identities=14% Similarity=0.049 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCccEEEecC-----HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 141 TWHAMEDLVSMGLVRSIGIRL-----NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir~iGvS~-----~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
.+..++++.+...|-.+=|++ .+....+++..+.++++.+...- ...-+.|++.|+++|+.++.
T Consensus 55 ~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t-~~ea~~l~~~a~~~~~~l~v 123 (342)
T COG0673 55 AYTDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALT-LEEAEELVELARKAGVKLMV 123 (342)
T ss_pred ccCCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCC-HHHHHHHHHHHHHcCCceee
Confidence 445577888888888888877 66667777778888888776542 23356899999999987765
No 159
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=27.09 E-value=3.5e+02 Score=22.13 Aligned_cols=96 Identities=17% Similarity=0.077 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcC-CccEEEecC-
Q 027753 84 HVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMG-LVRSIGIRL- 161 (219)
Q Consensus 84 ~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~- 161 (219)
.-+..+-+.|.++|+++|++-+ |... ..-|+.++.+.+.+ .++..+.+.
T Consensus 20 ~~k~~i~~~L~~~Gv~~iE~g~---p~~~--------------------------~~~~e~~~~l~~~~~~~~~~~~~r~ 70 (259)
T cd07939 20 EEKLAIARALDEAGVDEIEVGI---PAMG--------------------------EEEREAIRAIVALGLPARLIVWCRA 70 (259)
T ss_pred HHHHHHHHHHHHcCCCEEEEec---CCCC--------------------------HHHHHHHHHHHhcCCCCEEEEeccC
Confidence 3455566679999999999962 2211 12356666676643 366666664
Q ss_pred -HHHHHHHHhcCCceee-eeecCcchh------------hhHHHHHHHHHhcCceEEecCc
Q 027753 162 -NFVCVHCLVYIIPAFL-FKLSFPLAV------------IVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 162 -~~~l~~~~~~~~p~v~-q~~~~~~~~------------~~~~~l~~~~~~~gi~i~~~sp 208 (219)
.+.++.+.+.....+. -...+.... ..-...+++|+++|+.+....+
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~ 131 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE 131 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec
Confidence 7777777766212111 122222210 0124678899999987654333
No 160
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=27.07 E-value=2.6e+02 Score=20.55 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCceeecCcccC-----------------CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCC--chHHHH
Q 027753 27 RDLIINAIKIGYRHIDCAADYR-----------------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSD--HGHVLE 87 (219)
Q Consensus 27 ~~~l~~A~~~Gi~~~Dta~~Yg-----------------~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~--~~~i~~ 87 (219)
...+..+++.|+|+||.=-.++ .-+.+=+.+++.+... +.+-|++.-|-.... .+.+.+
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~~~~~~~~v~Hg~~~~~~~~~~dvL~~i~~fl~~~--p~e~VIl~l~~~~~~~~~~~l~~ 108 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWDGPDGEPVIYHGHTFTLPIKLSEVLEAIKDFAFVT--SPYPVILSLENHCSPDQQAKMAQ 108 (135)
T ss_pred HHHHHHHHHhCCCEEEEEcccCCCCCEEEEECCcccccEEHHHHHHHHHHHHHhC--CCCcEEEeehhhCCHHHHHHHHH
Confidence 5678899999999998432221 1223333344443344 666677777766531 223444
Q ss_pred HHHHHH
Q 027753 88 ACKDSL 93 (219)
Q Consensus 88 ~~~~sl 93 (219)
.+++.+
T Consensus 109 ~l~~~~ 114 (135)
T smart00148 109 MFKEIF 114 (135)
T ss_pred HHHHHH
Confidence 444444
No 161
>PRK04132 replication factor C small subunit; Provisional
Probab=27.01 E-value=5.2e+02 Score=25.61 Aligned_cols=61 Identities=16% Similarity=0.039 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHc--CCccEEEecC-HHHHHHHHhcCCceeeeeecCcchh-hhHHHHHHHHHhcCce
Q 027753 139 ETTWHAMEDLVSM--GLVRSIGIRL-NFVCVHCLVYIIPAFLFKLSFPLAV-IVEKTLDQWQVDTSLK 202 (219)
Q Consensus 139 ~~~~~~l~~l~~~--G~ir~iGvS~-~~~l~~~~~~~~p~v~q~~~~~~~~-~~~~~l~~~~~~~gi~ 202 (219)
.++.++|-+..++ +.++.|.+|| +..+...+. .-|....+.++.. .....|...|++.|+.
T Consensus 644 ~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIr---SRC~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 644 QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ---SRCAIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHh---hhceEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 3588899999995 9999999999 666554433 2355556666642 2234455666766754
No 162
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=26.92 E-value=4.7e+02 Score=23.50 Aligned_cols=92 Identities=22% Similarity=0.223 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhCCce-eecCcccCCHHHHHHHHHHHhhcCCCCCCcEEE-----Ee--cCCCCCchHHHHHHHHHHHHh
Q 027753 25 NIRDLIINAIKIGYRH-IDCAADYRNEAEVGEALAEAFSTGLVKREDLFI-----TT--KLWNSDHGHVLEACKDSLKKL 96 (219)
Q Consensus 25 ~~~~~l~~A~~~Gi~~-~Dta~~Yg~e~~vg~al~~~~~~~~~~R~~~~I-----~t--K~~~~~~~~i~~~~~~sl~~L 96 (219)
+=.+-++.|++.|-.. -|-|. .|+-..+-+.+-+. -+++--.|=| -. .+-..+.+.+.+.+++-.+
T Consensus 78 ~E~~K~~~A~~~GADtiMDLSt-Ggdl~~iR~~il~~---s~vpvGTVPiYqa~~~~~~~~~~mt~d~~~~~ie~qa~-- 151 (423)
T TIGR00190 78 EEVEKALIAIKYGADTVMDLST-GGDLDEIRKAILDA---VPVPVGTVPIYQAAEKVHGAVEDMDEDDMFRAIEKQAK-- 151 (423)
T ss_pred HHHHHHHHHHHcCCCeEeeccC-CCCHHHHHHHHHHc---CCCCccCccHHHHHHHhcCChhhCCHHHHHHHHHHHHH--
Confidence 3355688999999764 45543 45544444444331 1111110000 00 1122256777777777666
Q ss_pred CCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCc
Q 027753 97 QLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLV 154 (219)
Q Consensus 97 g~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i 154 (219)
|-+|.+.+|.-- +.+.++.+++.|++
T Consensus 152 --dGVDfmTiH~Gi------------------------------~~~~~~~~~~~~R~ 177 (423)
T TIGR00190 152 --DGVDFMTIHAGV------------------------------LLEYVERLKRSGRI 177 (423)
T ss_pred --hCCCEEEEccch------------------------------hHHHHHHHHhCCCc
Confidence 778999999832 55778888888854
No 163
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=26.88 E-value=3.8e+02 Score=22.45 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=28.1
Q ss_pred eecCCCCccccceeccccCCchhHHHHHHHHHHh-CCceeecCcc
Q 027753 3 ITLNNGFKMPIIGLGVWRMDESNIRDLIINAIKI-GYRHIDCAAD 46 (219)
Q Consensus 3 ~~~~~g~~vs~lglG~~~~~~~~~~~~l~~A~~~-Gi~~~Dta~~ 46 (219)
..++.|.+.+.+.|.+ ++..++++.-++. |++.|+....
T Consensus 3 ~TlRDG~Q~~~~~~s~-----e~K~~i~~~L~~~~Gv~~IEvg~~ 42 (280)
T cd07945 3 TTLRDGEQTSGVSFSP-----SEKLNIAKILLQELKVDRIEVASA 42 (280)
T ss_pred CCCCCcCcCCCCccCH-----HHHHHHHHHHHHHhCCCEEEecCC
Confidence 3567888877776654 6667777765555 9999998754
No 164
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=26.77 E-value=3.6e+02 Score=22.11 Aligned_cols=81 Identities=10% Similarity=0.055 Sum_probs=56.1
Q ss_pred cccceeccccCCchhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcEEEEecC--CCCCchHH
Q 027753 11 MPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTKL--WNSDHGHV 85 (219)
Q Consensus 11 vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~~I~tK~--~~~~~~~i 85 (219)
+-.+.+-|..+.+++..++.+.++++|..|+=||..+. +-..--+.+++.+ ..+ +-.|- +-++.+..
T Consensus 127 ~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~lM~~~v------g~~--vgvKaSGGIrt~eda 198 (228)
T COG0274 127 VLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDVKLMKETV------GGR--VGVKASGGIRTAEDA 198 (228)
T ss_pred eEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHh------ccC--ceeeccCCcCCHHHH
Confidence 45567777888899999999999999999999999663 2222233344431 111 23333 34477888
Q ss_pred HHHHHHHHHHhCCC
Q 027753 86 LEACKDSLKKLQLD 99 (219)
Q Consensus 86 ~~~~~~sl~~Lg~d 99 (219)
..-++--..|+|+.
T Consensus 199 ~~~i~aga~RiGtS 212 (228)
T COG0274 199 KAMIEAGATRIGTS 212 (228)
T ss_pred HHHHHHhHHHhccc
Confidence 88888888888875
No 165
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=26.75 E-value=2e+02 Score=23.43 Aligned_cols=39 Identities=18% Similarity=0.144 Sum_probs=30.0
Q ss_pred CchhHHHHHHHHHHhCCceeecCcccCC-------HHHHHHHHHHH
Q 027753 22 DESNIRDLIINAIKIGYRHIDCAADYRN-------EAEVGEALAEA 60 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~-------e~~vg~al~~~ 60 (219)
......++++.|++.|++.|-.+..... .+.+.++++..
T Consensus 87 ~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A 132 (247)
T cd07491 87 TPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEA 132 (247)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHHHHHHHHH
Confidence 3456789999999999999988854432 56788888876
No 166
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=26.68 E-value=4e+02 Score=22.70 Aligned_cols=122 Identities=12% Similarity=0.042 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHh-CCceeecCc-cc--CCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCC
Q 027753 23 ESNIRDLIINAIKI-GYRHIDCAA-DY--RNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQL 98 (219)
Q Consensus 23 ~~~~~~~l~~A~~~-Gi~~~Dta~-~Y--g~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~ 98 (219)
.++..+++++.-+. |++.+--+- .. .+...+.+.++...+.+ ....+.|.|+.....+..+...+-+.|++.|.
T Consensus 121 ~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~--~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~ 198 (321)
T TIGR03822 121 PAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAID--HVKIVRFHTRVPVADPARVTPALIAALKTSGK 198 (321)
T ss_pred HHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCC--CccEEEEeCCCcccChhhcCHHHHHHHHHcCC
Confidence 35566677665544 777552221 11 13344555555542222 23446788887555556666677777777773
Q ss_pred CcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccE----E--EecC-HHHHHHHHhc
Q 027753 99 DYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRS----I--GIRL-NFVCVHCLVY 171 (219)
Q Consensus 99 d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~----i--GvS~-~~~l~~~~~~ 171 (219)
. ..+.+|..... .-..+++++++.|++.|..-. + |+.. .+.+.++.+.
T Consensus 199 ~--v~i~l~~~h~~-----------------------el~~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~ 253 (321)
T TIGR03822 199 T--VYVALHANHAR-----------------------ELTAEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRA 253 (321)
T ss_pred c--EEEEecCCChh-----------------------hcCHHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHH
Confidence 2 34667763221 013679999999999997221 1 4433 5556555544
No 167
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=26.63 E-value=1.7e+02 Score=24.36 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=31.2
Q ss_pred CcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC-HHHHHHHH
Q 027753 99 DYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL-NFVCVHCL 169 (219)
Q Consensus 99 d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~~~l~~~~ 169 (219)
...|+++|..|-.. .|... ..+.++-|.+|+++|+.- +=|+. .....+..
T Consensus 156 ~~p~lllLDEP~~g-------------------vD~~~-~~~i~~lL~~l~~eg~tI-l~vtHDL~~v~~~~ 206 (254)
T COG1121 156 QNPDLLLLDEPFTG-------------------VDVAG-QKEIYDLLKELRQEGKTV-LMVTHDLGLVMAYF 206 (254)
T ss_pred cCCCEEEecCCccc-------------------CCHHH-HHHHHHHHHHHHHCCCEE-EEEeCCcHHhHhhC
Confidence 56788888887654 33222 466889999999998742 22333 44444433
No 168
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=26.43 E-value=3.2e+02 Score=22.52 Aligned_cols=71 Identities=8% Similarity=-0.101 Sum_probs=40.6
Q ss_pred HHHHHHHHH-----HHHHcCCccEEEecC-----HHHHHHHHhc-----C---CceeeeeecCcchhhhHH----HHHHH
Q 027753 138 LETTWHAME-----DLVSMGLVRSIGIRL-----NFVCVHCLVY-----I---IPAFLFKLSFPLAVIVEK----TLDQW 195 (219)
Q Consensus 138 ~~~~~~~l~-----~l~~~G~ir~iGvS~-----~~~l~~~~~~-----~---~p~v~q~~~~~~~~~~~~----~l~~~ 195 (219)
+.+.|+.|. ...+.|.--+++|.- +..+...+.. . ..++=.+.+.... ..+. .=++.
T Consensus 44 ~~~h~~rl~~~E~~Ra~~~Gl~~~vavGvHPr~iP~e~~~~l~~L~~~l~~e~VvAiGEiGLe~~t-~~E~evf~~QL~L 122 (254)
T COG1099 44 YLDHFRRLLGVEPERAEKAGLKLKVAVGVHPRAIPPELEEVLEELEELLSNEDVVAIGEIGLEEAT-DEEKEVFREQLEL 122 (254)
T ss_pred HHHHHHHHHccchhhHHhhCceeeEEeccCCCCCCchHHHHHHHHHhhcccCCeeEeeecccccCC-HHHHHHHHHHHHH
Confidence 455665544 345677766666553 4445555444 2 1233344444433 2232 23678
Q ss_pred HHhcCceEEecCcc
Q 027753 196 QVDTSLKLMRGSQF 209 (219)
Q Consensus 196 ~~~~gi~i~~~sp~ 209 (219)
+++.+++++...|=
T Consensus 123 A~e~dvPviVHTPr 136 (254)
T COG1099 123 ARELDVPVIVHTPR 136 (254)
T ss_pred HHHcCCcEEEeCCC
Confidence 99999999999994
No 169
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=26.21 E-value=1.7e+02 Score=23.83 Aligned_cols=61 Identities=16% Similarity=0.080 Sum_probs=32.6
Q ss_pred HHHHHHcCC-ccEEEec------C-HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEec
Q 027753 145 MEDLVSMGL-VRSIGIR------L-NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRG 206 (219)
Q Consensus 145 l~~l~~~G~-ir~iGvS------~-~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~ 206 (219)
-++|+++|. |.|+-.. + .+.|...++...+.-++.. .|.....++.|-.+|++.||.+...
T Consensus 55 a~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~-~P~d~~l~~~l~~~~~~~~i~~~~~ 123 (224)
T PF04244_consen 55 ADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVM-EPGDYRLEQRLESLAQQLGIPLEVL 123 (224)
T ss_dssp HHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE---S-HHHHHHHHH----SSS-EEEE
T ss_pred HHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEE-CCCCHHHHHHHHhhhcccCCceEEe
Confidence 357888997 8888888 3 5666666665222222222 3555567889999999999988654
No 170
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=26.19 E-value=3.5e+02 Score=21.84 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=58.8
Q ss_pred CCCcEEEEecCCCCCchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHH
Q 027753 67 KREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAME 146 (219)
Q Consensus 67 ~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 146 (219)
+.++++|-.+.++.+.+.-.....+....++.+. -++...||..... ..+..+... ...+-....+.|+
T Consensus 16 ~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~-~~i~FsWPS~g~~------~~Y~~d~~~----a~~s~~~l~~~L~ 84 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPG-VVILFSWPSDGSL------LGYFYDRES----ARFSGPALARFLR 84 (233)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCc-eEEEEEcCCCCCh------hhhhhhhhh----HHHHHHHHHHHHH
Confidence 7889999999999998887777888888888655 7788899976422 111111110 0011233445566
Q ss_pred HHHHc---CCccEEEecC-HHHHHHHHhc
Q 027753 147 DLVSM---GLVRSIGIRL-NFVCVHCLVY 171 (219)
Q Consensus 147 ~l~~~---G~ir~iGvS~-~~~l~~~~~~ 171 (219)
.|.+. .+|.-++=|- ...+.+++..
T Consensus 85 ~L~~~~~~~~I~ilaHSMG~rv~~~aL~~ 113 (233)
T PF05990_consen 85 DLARAPGIKRIHILAHSMGNRVLLEALRQ 113 (233)
T ss_pred HHHhccCCceEEEEEeCchHHHHHHHHHH
Confidence 66666 4566677776 5555555544
No 171
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=26.17 E-value=4.4e+02 Score=23.00 Aligned_cols=69 Identities=12% Similarity=-0.012 Sum_probs=47.9
Q ss_pred ccHHHHHHHHHHHHHcCC-ccEEEecC---HHHHHHHHhc-CCceeeeeecCc-ch-hh-------------------hH
Q 027753 136 ISLETTWHAMEDLVSMGL-VRSIGIRL---NFVCVHCLVY-IIPAFLFKLSFP-LA-VI-------------------VE 189 (219)
Q Consensus 136 ~~~~~~~~~l~~l~~~G~-ir~iGvS~---~~~l~~~~~~-~~p~v~q~~~~~-~~-~~-------------------~~ 189 (219)
.+.+.+.+...+|.+.|- |-.+-|-+ .+.+.++.+. ..|-|.-++|+. +. .. .-
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~v 110 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPGNIGFRERV 110 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHHH
Confidence 347889999999999997 66677776 5555555555 667777777642 11 10 11
Q ss_pred HHHHHHHHhcCceEE
Q 027753 190 KTLDQWQVDTSLKLM 204 (219)
Q Consensus 190 ~~l~~~~~~~gi~i~ 204 (219)
..+++.|+++|+++=
T Consensus 111 ~~vv~~ak~~~ipIR 125 (346)
T TIGR00612 111 RDVVEKARDHGKAMR 125 (346)
T ss_pred HHHHHHHHHCCCCEE
Confidence 778999999999873
No 172
>PF13989 YejG: YejG-like protein
Probab=26.10 E-value=1.1e+02 Score=21.66 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=26.0
Q ss_pred CCCcEEEEecCCCC---CchHHHHHHHHHHHHhCCCc
Q 027753 67 KREDLFITTKLWNS---DHGHVLEACKDSLKKLQLDY 100 (219)
Q Consensus 67 ~R~~~~I~tK~~~~---~~~~i~~~~~~sl~~Lg~d~ 100 (219)
..++-.|..|+-.. +.-.+.+.+.++|..+.++.
T Consensus 33 ~~~n~LigLkLLShdg~~aw~im~~L~~sL~eiqv~~ 69 (106)
T PF13989_consen 33 DEDNDLIGLKLLSHDGESAWQIMQQLSQSLAEIQVDC 69 (106)
T ss_pred CcccceEEEEeeCCCChHHHHHHHHHHHHHHHhcccc
Confidence 46677888888555 34578899999999998653
No 173
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=26.06 E-value=5e+02 Score=23.57 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=57.2
Q ss_pred cccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC-CchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCc
Q 027753 45 ADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSA 123 (219)
Q Consensus 45 ~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~-~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~ 123 (219)
-.||.++.+-+++.+..+.- ..+=++|.|-+-.. --+.+..-+++.-+++| +.++.++.|.....
T Consensus 99 vVfGg~~kL~~~I~ei~~~~--~P~~I~V~tTC~~~lIGdDi~~v~~~~~~~~~---~pvi~v~t~Gf~g~--------- 164 (475)
T PRK14478 99 VVFGGEKKLFKAIDEIIEKY--APPAVFVYQTCVVALIGDDIDAVCKRAAEKFG---IPVIPVNSPGFVGN--------- 164 (475)
T ss_pred eeeCCHHHHHHHHHHHHHhc--CCCEEEEeCCChHHHhccCHHHHHHHHHHhhC---CCEEEEECCCcccc---------
Confidence 35688888888888875543 34556777766332 12333333333333443 67788887765311
Q ss_pred CCCCCcccccccccHHHHHHHHHH-HH--------HcCCccEEEecC----HHHHHHHHhc
Q 027753 124 LDADGVLEIDTTISLETTWHAMED-LV--------SMGLVRSIGIRL----NFVCVHCLVY 171 (219)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~-l~--------~~G~ir~iGvS~----~~~l~~~~~~ 171 (219)
.......++++|-+ +. ..+.|--||-.+ .+.+.++++.
T Consensus 165 ----------~~~G~~~a~~al~~~l~~~~~~~~~~~~~VNiiG~~~~~gd~~elk~lL~~ 215 (475)
T PRK14478 165 ----------KNLGNKLAGEALLDHVIGTVEPEDTTPYDINILGEYNLAGELWQVKPLLDR 215 (475)
T ss_pred ----------hhhhHHHHHHHHHHHHhccCCccCCCCCeEEEEeCCCCCCCHHHHHHHHHH
Confidence 01113334444332 32 235577777555 6677788877
No 174
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=25.85 E-value=4.4e+02 Score=22.87 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=48.7
Q ss_pred CCcEEEEecCCC--C--CchHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHH
Q 027753 68 REDLFITTKLWN--S--DHGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWH 143 (219)
Q Consensus 68 R~~~~I~tK~~~--~--~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (219)
+.-++|.+|+-- . ..+.+.+-+++.++.+|....+++.+..-.. ..+.+.++
T Consensus 91 ~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g------------------------~gv~eL~~ 146 (360)
T TIGR03597 91 NPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKG------------------------NGIDELLD 146 (360)
T ss_pred CCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCC------------------------CCHHHHHH
Confidence 445778899832 2 2345555565667777765446665433211 12677888
Q ss_pred HHHHHHHcCCccEEEecC---HHHHHHHHh
Q 027753 144 AMEDLVSMGLVRSIGIRL---NFVCVHCLV 170 (219)
Q Consensus 144 ~l~~l~~~G~ir~iGvS~---~~~l~~~~~ 170 (219)
.+.++.+.+.+--+|.+| ...+..++.
T Consensus 147 ~l~~~~~~~~v~~vG~~nvGKStliN~l~~ 176 (360)
T TIGR03597 147 KIKKARNKKDVYVVGVTNVGKSSLINKLLK 176 (360)
T ss_pred HHHHHhCCCeEEEECCCCCCHHHHHHHHHh
Confidence 888877667899999999 444444443
No 175
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=25.74 E-value=4.4e+02 Score=22.80 Aligned_cols=68 Identities=3% Similarity=-0.053 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCcc-EEEecC--HHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcCceEEecCc
Q 027753 141 TWHAMEDLVSMGLVR-SIGIRL--NFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir-~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
-++.+.+|++...+. ..|=|- ...+..+++.....++|.....+. -..-..+.+.|+++|+.++.++.
T Consensus 202 d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 273 (361)
T cd03322 202 NQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGP 273 (361)
T ss_pred cHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCC
Confidence 467778888887665 444433 778888877666677777755443 23357889999999999987643
No 176
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=25.71 E-value=3.9e+02 Score=22.13 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=58.0
Q ss_pred cCCchhHHHHHHHHHHhCCceeecCcccC------CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC-----Cc------
Q 027753 20 RMDESNIRDLIINAIKIGYRHIDCAADYR------NEAEVGEALAEAFSTGLVKREDLFITTKLWNS-----DH------ 82 (219)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg------~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~-----~~------ 82 (219)
+++++++.+++..-+.+||+.==.++.-| .|..+.+|+.-+-..| .||+.+.=...+|+. ||
T Consensus 27 gL~e~eANemlAlL~~~gI~A~K~~~~~g~~~l~Ve~~~fa~Av~iL~~~G-lPr~~f~~l~d~Fp~dgLVsSP~eEkaR 105 (246)
T COG4669 27 GLSEKEANEMLALLMSHGINAEKKADKDGGTSLLVEESDFAEAVEILNQNG-LPRKKFTTLGDIFPKDGLVSSPTEEKAR 105 (246)
T ss_pred CCCHhHHHHHHHHHHHcCCcceeeccCCCceEEEEcHHHHHHHHHHHHhcC-CCCCCCCcHHHhCCcccccCCcHHHHHH
Confidence 55899999999999999999876666665 4888888876543345 899887767777665 22
Q ss_pred --hHHHHHHHHHHHHhC
Q 027753 83 --GHVLEACKDSLKKLQ 97 (219)
Q Consensus 83 --~~i~~~~~~sl~~Lg 97 (219)
..+.++++++|+.+.
T Consensus 106 ~~~~~eQ~le~tLs~mD 122 (246)
T COG4669 106 LNYAKEQQLEQTLSKMD 122 (246)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 246778888888885
No 177
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=25.61 E-value=4.7e+02 Score=23.06 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=39.2
Q ss_pred cCcccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC-CchHHHHHHHHHHHHhCCCcccEEEeecCCCC
Q 027753 43 CAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (219)
Q Consensus 43 ta~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~-~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~ 112 (219)
..-.||.++.+-+++++..++. +.+=++|.|-+-+. --+.+..-+++.-+++ .+.++.+|.|...
T Consensus 64 ~d~VfGg~~~L~~~i~~~~~~~--~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~---~~~vi~v~t~gf~ 129 (410)
T cd01968 64 KDVIFGGEKKLYKAILEIIERY--HPKAVFVYSTCVVALIGDDIDAVCKTASEKF---GIPVIPVHSPGFV 129 (410)
T ss_pred cceeeccHHHHHHHHHHHHHhC--CCCEEEEECCCchhhhccCHHHHHHHHHHhh---CCCEEEEECCCcc
Confidence 3345788889999999876654 44557777776433 2233443333333333 3568888887653
No 178
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=25.55 E-value=3.7e+02 Score=21.88 Aligned_cols=105 Identities=12% Similarity=0.005 Sum_probs=68.6
Q ss_pred EecCCCC-Cc-hHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHc
Q 027753 74 TTKLWNS-DH-GHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSM 151 (219)
Q Consensus 74 ~tK~~~~-~~-~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 151 (219)
++|.... .+ .....-++..-+......++-+++....... +..|.+.-.++|.+.
T Consensus 65 tsky~~~g~~N~yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~-----------------------sYnEp~tM~kdL~~~ 121 (235)
T COG2949 65 TSKYLAKGPPNRYYTYRIDAAIALYKAGKVNYLLLSGDNATV-----------------------SYNEPRTMRKDLIAA 121 (235)
T ss_pred ccccccCCCccHhHHHHHHHHHHHHhcCCeeEEEEecCCCcc-----------------------cccchHHHHHHHHHc
Confidence 3555444 22 3456667777777777899999887644332 245677788899999
Q ss_pred CC------ccEEEecCHHHHHHHHhc---CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecC
Q 027753 152 GL------VRSIGIRLNFVCVHCLVY---IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGS 207 (219)
Q Consensus 152 G~------ir~iGvS~~~~l~~~~~~---~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~s 207 (219)
|. ..+-|+++.+.+.++-+. ....++...+|. ++. +=.|+.+||.-+++.
T Consensus 122 GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftIItQ~FHc-----eRA-lfiA~~~gIdAic~~ 180 (235)
T COG2949 122 GVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTIITQRFHC-----ERA-LFIARQMGIDAICFA 180 (235)
T ss_pred CCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEEeccccc-----HHH-HHHHHHhCCceEEec
Confidence 97 567788886666666554 555666666552 223 347888888877653
No 179
>PF12728 HTH_17: Helix-turn-helix domain
Probab=25.55 E-value=1.5e+02 Score=17.32 Aligned_cols=28 Identities=11% Similarity=0.007 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCccEEEecC-----HHHHHHHHh
Q 027753 143 HAMEDLVSMGLVRSIGIRL-----NFVCVHCLV 170 (219)
Q Consensus 143 ~~l~~l~~~G~ir~iGvS~-----~~~l~~~~~ 170 (219)
.++.++.++|.++.+++.. .+++++.++
T Consensus 16 ~tv~~~~~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (51)
T PF12728_consen 16 STVYRWIRQGKIPPFKIGRKWRIPKSDLDRWLE 48 (51)
T ss_pred HHHHHHHHcCCCCeEEeCCEEEEeHHHHHHHHH
Confidence 4567888999999998655 666666654
No 180
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=25.53 E-value=3.7e+02 Score=21.84 Aligned_cols=33 Identities=18% Similarity=0.211 Sum_probs=25.8
Q ss_pred cceeccccCCchhHHHHHHHHHHhCCceeecCc
Q 027753 13 IIGLGVWRMDESNIRDLIINAIKIGYRHIDCAA 45 (219)
Q Consensus 13 ~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~ 45 (219)
+||+-|..+......+.++.+-+.|++.++...
T Consensus 2 ~lg~~t~~~~~~~l~~~l~~~~~~G~~~vEl~~ 34 (275)
T PRK09856 2 KTGMFTCGHQRLPIEHAFRDASELGYDGIEIWG 34 (275)
T ss_pred ceeeeehhheeCCHHHHHHHHHHcCCCEEEEcc
Confidence 456666666666788899999999999999753
No 181
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=25.40 E-value=4.6e+02 Score=22.95 Aligned_cols=82 Identities=16% Similarity=0.090 Sum_probs=50.2
Q ss_pred CchHHHHHHHHHHHHhCCC---ccc-EEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHH-cCC--
Q 027753 81 DHGHVLEACKDSLKKLQLD---YLD-LYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVS-MGL-- 153 (219)
Q Consensus 81 ~~~~i~~~~~~sl~~Lg~d---~lD-l~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~G~-- 153 (219)
+...|..|+....+.++.. .+. ++++---++. .+ ++.+..+++-+.+ .|.
T Consensus 130 s~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl-------------------~N----~dnV~~a~~i~~~~~G~~l 186 (349)
T COG0820 130 SAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPL-------------------LN----LDNVVKALEIINDDEGLGL 186 (349)
T ss_pred CHHHHHHHHHHHHHhcCccccceeeeEEEecCCchh-------------------hh----HHHHHHHHHhhcCcccccc
Confidence 5789999999999999864 233 3333322221 11 5567777777764 333
Q ss_pred -ccEEEecC---HHHHHHHHhcCCceeeeeecCcch
Q 027753 154 -VRSIGIRL---NFVCVHCLVYIIPAFLFKLSFPLA 185 (219)
Q Consensus 154 -ir~iGvS~---~~~l~~~~~~~~p~v~q~~~~~~~ 185 (219)
.|+|=||+ ...+.++.+.....-.++-.|.-+
T Consensus 187 s~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~n 222 (349)
T COG0820 187 SKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPN 222 (349)
T ss_pred cceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCC
Confidence 27888888 777888775433444455555443
No 182
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=25.36 E-value=1.7e+02 Score=24.10 Aligned_cols=55 Identities=11% Similarity=-0.066 Sum_probs=38.2
Q ss_pred CccEEEecCHHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEecC
Q 027753 153 LVRSIGIRLNFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGS 207 (219)
Q Consensus 153 ~ir~iGvS~~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~s 207 (219)
.++.=|+.+.+.+.+++....+..+-=..||+.....+...+.|++.||+++-|-
T Consensus 46 ~v~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~e 100 (249)
T PF02571_consen 46 EVRVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFE 100 (249)
T ss_pred eEEECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEE
Confidence 3444344357777777766444444445578888888999999999999998753
No 183
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=24.86 E-value=66 Score=21.26 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCceEEecCcc
Q 027753 189 EKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 189 ~~~l~~~~~~~gi~i~~~sp~ 209 (219)
-+..+++++++|..|++-+||
T Consensus 44 ~~~~l~~a~~~~~kv~p~C~y 64 (78)
T PF14542_consen 44 VEAALDYARENGLKVVPTCSY 64 (78)
T ss_dssp HHHHHHHHHHTT-EEEETSHH
T ss_pred HHHHHHHHHHCCCEEEEECHH
Confidence 377899999999999999998
No 184
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=24.84 E-value=3.8e+02 Score=21.77 Aligned_cols=68 Identities=15% Similarity=-0.030 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHcCCccEEEecC---HHHHHHHHhc---CCceeee------------eecCcchhhhHHHHHHHHHhcC
Q 027753 139 ETTWHAMEDLVSMGLVRSIGIRL---NFVCVHCLVY---IIPAFLF------------KLSFPLAVIVEKTLDQWQVDTS 200 (219)
Q Consensus 139 ~~~~~~l~~l~~~G~ir~iGvS~---~~~l~~~~~~---~~p~v~q------------~~~~~~~~~~~~~l~~~~~~~g 200 (219)
.++.+++.+|+++|. .+.+++ ...+..+++. ..|.+.. +..+++....-..+++++++++
T Consensus 22 ~~~~~ai~~l~~~G~--~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~~~~~~~l~~~~i~~~~~~~i~~~~~~~~ 99 (272)
T PRK15126 22 EKTLSTLARLRERDI--TLTFATGRHVLEMQHILGALSLDAYLITGNGTRVHSLEGELLHRQDLPADVAELVLHQQWDTR 99 (272)
T ss_pred HHHHHHHHHHHHCCC--EEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEEcCCCCEEEeecCCHHHHHHHHHHhhhcC
Confidence 568899999999996 566666 5555555554 2232211 1112333334477888898888
Q ss_pred ceEEecCc
Q 027753 201 LKLMRGSQ 208 (219)
Q Consensus 201 i~i~~~sp 208 (219)
+.+..|+.
T Consensus 100 ~~~~~~~~ 107 (272)
T PRK15126 100 ASMHVFND 107 (272)
T ss_pred cEEEEEcC
Confidence 87766654
No 185
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=24.60 E-value=1.2e+02 Score=22.19 Aligned_cols=23 Identities=17% Similarity=-0.135 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHhcCceEEecCc
Q 027753 186 VIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 186 ~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
...+..|++.+++.|+++.-|++
T Consensus 46 K~~E~~L~~~A~~lg~pl~~~~~ 68 (126)
T PRK07027 46 KADEAGLLALCARHGWPLRAFSA 68 (126)
T ss_pred hcCCHHHHHHHHHhCCCeEEeCH
Confidence 34578999999999999998866
No 186
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=24.54 E-value=2.4e+02 Score=20.01 Aligned_cols=46 Identities=7% Similarity=-0.141 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCc
Q 027753 162 NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 162 ~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
.+.+..++.. .|.++-+..=.-......++.+.++++||++....-
T Consensus 42 ~e~l~~l~~~-~peiliiGTG~~~~~~~~~~~~~l~~~gi~vE~m~T 87 (109)
T cd05560 42 AAHFEALLAL-QPEVILLGTGERQRFPPPALLAPLLARGIGVEVMDT 87 (109)
T ss_pred HHHHHHHHhc-CCCEEEEecCCCCCcCCHHHHHHHHHcCCeEEEECH
Confidence 7777776663 466665543322233467888999999998877654
No 187
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=24.34 E-value=5e+02 Score=23.25 Aligned_cols=16 Identities=19% Similarity=0.148 Sum_probs=13.7
Q ss_pred HHHHHHHHhcCceEEe
Q 027753 190 KTLDQWQVDTSLKLMR 205 (219)
Q Consensus 190 ~~l~~~~~~~gi~i~~ 205 (219)
+.+.+.|+++|+-++.
T Consensus 208 ~~lr~lCd~~g~LLI~ 223 (404)
T COG4992 208 KALRELCDEHGALLIL 223 (404)
T ss_pred HHHHHHHHHhCeEEEE
Confidence 7889999999997764
No 188
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=24.18 E-value=2.4e+02 Score=20.25 Aligned_cols=55 Identities=9% Similarity=-0.083 Sum_probs=33.5
Q ss_pred ccEEEecC-----HHHHHHHHhc-CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCc
Q 027753 154 VRSIGIRL-----NFVCVHCLVY-IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 154 ir~iGvS~-----~~~l~~~~~~-~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
+..|.+.. .+.+..+... ..|.++-+..-.-......++.++++++||.+....-
T Consensus 29 ~~~W~~~~~~~l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~gi~vevm~T 89 (114)
T cd05125 29 VFSWNVSSFEDITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKLGIAVEVVDT 89 (114)
T ss_pred eeccCCCChhhCCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHcCCEEEEECH
Confidence 44555554 5555555543 5566665553332334467788888899998876654
No 189
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.17 E-value=3.9e+02 Score=21.69 Aligned_cols=62 Identities=15% Similarity=0.033 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCccEE---EecCHHHHHHHHhc-CCceeeeeecCcchhhhHHHHHHHHHhcCceE
Q 027753 142 WHAMEDLVSMGLVRSI---GIRLNFVCVHCLVY-IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKL 203 (219)
Q Consensus 142 ~~~l~~l~~~G~ir~i---GvS~~~~l~~~~~~-~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i 203 (219)
|+.+.++.+.-.+.-| |+++.+++.++++. ..-.++-..........-.++.+.|++.||.+
T Consensus 186 ~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~~~~~~ 251 (253)
T PRK02083 186 LELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHHCCCcc
Confidence 4444555544333433 45558888887764 21122211110111233578899999999864
No 190
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.15 E-value=4.8e+02 Score=22.72 Aligned_cols=72 Identities=11% Similarity=-0.017 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHHcC-C---ccEE---EecC-HHHHHHHHhc---CCceeeeeecCcchh-----hhH---HHHHHHHH
Q 027753 137 SLETTWHAMEDLVSMG-L---VRSI---GIRL-NFVCVHCLVY---IIPAFLFKLSFPLAV-----IVE---KTLDQWQV 197 (219)
Q Consensus 137 ~~~~~~~~l~~l~~~G-~---ir~i---GvS~-~~~l~~~~~~---~~p~v~q~~~~~~~~-----~~~---~~l~~~~~ 197 (219)
++++++++++++.+.+ . ++++ |+.. .+++.++.+. ....|+-++|+++.. ... ..+.+.++
T Consensus 244 ~l~~Il~~l~~~~~~~~~~v~iey~lI~gvNDs~ed~~~La~ll~~l~~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~ 323 (356)
T PRK14455 244 PLEKLMEAIEYYIEKTNRRVTFEYILLGGVNDQVEHAEELADLLKGIKCHVNLIPVNPVPERDYVRTPKEDIFAFEDTLK 323 (356)
T ss_pred CHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhcCCCcEEEEecCcCCCCCCcCCCHHHHHHHHHHHH
Confidence 4788999999887744 2 3445 4444 5666555544 556788888887641 122 44566788
Q ss_pred hcCceEEecCc
Q 027753 198 DTSLKLMRGSQ 208 (219)
Q Consensus 198 ~~gi~i~~~sp 208 (219)
++|+.+.....
T Consensus 324 ~~gi~v~ir~~ 334 (356)
T PRK14455 324 KNGVNCTIRRE 334 (356)
T ss_pred HCCCcEEEeCC
Confidence 99999876654
No 191
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=24.13 E-value=1e+02 Score=22.44 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEe
Q 027753 163 FVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 163 ~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~ 205 (219)
+.++++++..+|+++-..-. ...+.+++.|++++++++.
T Consensus 72 ~~l~~l~~~~~P~iIvt~~~----~~p~~l~e~a~~~~ipll~ 110 (127)
T PF02603_consen 72 ERLEKLFSYNPPCIIVTRGL----EPPPELIELAEKYNIPLLR 110 (127)
T ss_dssp CHHHHHCTTT-S-EEEETTT-------HHHHHHHHHCT--EEE
T ss_pred HHHHHHhCCCCCEEEEECcC----CCCHHHHHHHHHhCCcEEE
Confidence 34445555477777766643 3378999999999998875
No 192
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=24.06 E-value=89 Score=16.89 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=11.9
Q ss_pred chhHHHHHHHHHHhCCc
Q 027753 23 ESNIRDLIINAIKIGYR 39 (219)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~ 39 (219)
+.+-.+++..|.+.|+.
T Consensus 2 D~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 2 DEEWVELIKEAKESGLS 18 (30)
T ss_dssp -HHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHcCCC
Confidence 35667899999999976
No 193
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=24.02 E-value=1.7e+02 Score=24.72 Aligned_cols=21 Identities=5% Similarity=0.132 Sum_probs=17.5
Q ss_pred hhhHHHHHHHHHhcCceEEec
Q 027753 186 VIVEKTLDQWQVDTSLKLMRG 206 (219)
Q Consensus 186 ~~~~~~l~~~~~~~gi~i~~~ 206 (219)
+..-++|+++|+++||.|+.-
T Consensus 71 ~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 71 YAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred HHHHHHHHHHHHHcCCEEEEe
Confidence 344589999999999999873
No 194
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=23.50 E-value=3.8e+02 Score=23.61 Aligned_cols=69 Identities=7% Similarity=-0.152 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCCcc-EEEecC--HHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcCceEEecCcc
Q 027753 141 TWHAMEDLVSMGLVR-SIGIRL--NFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir-~iGvS~--~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp~ 209 (219)
.+..|.+|++...+. ..|=|- ..++.++++.....+.|.....+. -..-..+.+.|+++|+.++.++..
T Consensus 249 d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 249 GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 356777788776554 333332 677788877766677777755443 234578899999999999887754
No 195
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=22.94 E-value=6e+02 Score=23.38 Aligned_cols=61 Identities=8% Similarity=0.054 Sum_probs=32.4
Q ss_pred cCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhC-CCcccEEEeecCCCC
Q 027753 47 YRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQ-LDYLDLYLVHFPVAT 112 (219)
Q Consensus 47 Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg-~d~lDl~~lh~p~~~ 112 (219)
+|.++.+-+++++..+.- ..+=++|.|-+.. +-|-.+++...+.+. -..++++.+|.|...
T Consensus 67 ~Gg~~kL~~~I~~~~~~~--~P~~I~V~tTC~~---eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~ 128 (513)
T CHL00076 67 RGSQEKVVDNITRKDKEE--RPDLIVLTPTCTS---SILQEDLQNFVDRASIESDSDVILADVNHYR 128 (513)
T ss_pred cchHHHHHHHHHHHHHhc--CCCEEEECCCCch---hhhhcCHHHHHHHhhcccCCCEEEeCCCCCc
Confidence 466677777777653332 3444566666632 223333333333332 023689999998654
No 196
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=22.93 E-value=1.5e+02 Score=21.15 Aligned_cols=20 Identities=5% Similarity=0.096 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHhcCceEEec
Q 027753 187 IVEKTLDQWQVDTSLKLMRG 206 (219)
Q Consensus 187 ~~~~~l~~~~~~~gi~i~~~ 206 (219)
..++++.++|+++|+.++.-
T Consensus 89 ~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 89 AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp S--HHHHHHHHHTT-EEEES
T ss_pred hHHHHHHHHHHHcCCEEEeC
Confidence 34788999999999998853
No 197
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=22.84 E-value=44 Score=26.40 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=11.2
Q ss_pred HHHHHHhCCCcccEE
Q 027753 90 KDSLKKLQLDYLDLY 104 (219)
Q Consensus 90 ~~sl~~Lg~d~lDl~ 104 (219)
.+.|+.||+||||==
T Consensus 86 AqiLealgVD~IDES 100 (208)
T PF01680_consen 86 AQILEALGVDYIDES 100 (208)
T ss_dssp HHHHHHTT-SEEEEE
T ss_pred hhhHHHhCCceeccc
Confidence 367899999999953
No 198
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=22.77 E-value=5.8e+02 Score=23.12 Aligned_cols=24 Identities=8% Similarity=0.207 Sum_probs=16.2
Q ss_pred CCchhHHHHHHHHHHhCCceeecC
Q 027753 21 MDESNIRDLIINAIKIGYRHIDCA 44 (219)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~Dta 44 (219)
.+++-..+.++.|.++|+..|-..
T Consensus 93 ~pddvv~~~v~~A~~~Gvd~irif 116 (448)
T PRK12331 93 YADDVVESFVQKSVENGIDIIRIF 116 (448)
T ss_pred CchhhHHHHHHHHHHCCCCEEEEE
Confidence 355556777788888887765443
No 199
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=22.40 E-value=5.1e+02 Score=22.39 Aligned_cols=108 Identities=20% Similarity=0.230 Sum_probs=62.0
Q ss_pred CCchhHHHHHHHHHHhCCceeecCcccCCHHHHHHHHHHHhhcC-CCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCC
Q 027753 21 MDESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTG-LVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLD 99 (219)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~~~~~-~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d 99 (219)
++.++...+++.|.+.|++=+=-+ |-|..+-+-|.+.++.= ...-.++-++|.. .........|+.-|++
T Consensus 43 Ls~eei~~~~~~~~~~Gv~kvRlT---GGEPllR~dl~eIi~~l~~~~~~~islTTNG------~~L~~~a~~Lk~AGl~ 113 (322)
T COG2896 43 LSLEEIRRLVRAFAELGVEKVRLT---GGEPLLRKDLDEIIARLARLGIRDLSLTTNG------VLLARRAADLKEAGLD 113 (322)
T ss_pred CCHHHHHHHHHHHHHcCcceEEEe---CCCchhhcCHHHHHHHHhhcccceEEEecch------hhHHHHHHHHHHcCCc
Confidence 367899999999999999876433 33444433333332211 0123456666543 4555677778888888
Q ss_pred cccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCC
Q 027753 100 YLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL 153 (219)
Q Consensus 100 ~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 153 (219)
.|.+= +|..++... .. ......+.++++.+++..+.|.
T Consensus 114 rVNVS-LDsld~e~f-------~~--------IT~~~~~~~Vl~GI~~A~~~Gl 151 (322)
T COG2896 114 RVNVS-LDSLDPEKF-------RK--------ITGRDRLDRVLEGIDAAVEAGL 151 (322)
T ss_pred EEEee-cccCCHHHH-------HH--------HhCCCcHHHHHHHHHHHHHcCC
Confidence 77654 455443211 00 1111125677777777777776
No 200
>PF13289 SIR2_2: SIR2-like domain
Probab=22.30 E-value=2.8e+02 Score=19.77 Aligned_cols=65 Identities=6% Similarity=-0.072 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHcCCccEEEecC-HHHHHHHHhc---CCceeeeeecCcchhhh-HHHHHHHHHhcCceEE
Q 027753 139 ETTWHAMEDLVSMGLVRSIGIRL-NFVCVHCLVY---IIPAFLFKLSFPLAVIV-EKTLDQWQVDTSLKLM 204 (219)
Q Consensus 139 ~~~~~~l~~l~~~G~ir~iGvS~-~~~l~~~~~~---~~p~v~q~~~~~~~~~~-~~~l~~~~~~~gi~i~ 204 (219)
...+..+.++.....+-.||.|- -..+..++.. .... .....+.+.... .....++.++.||.++
T Consensus 74 ~~~~~~l~~~l~~~~~lfiGys~~D~~i~~~l~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 74 PWFPNFLRSLLRSKTLLFIGYSFNDPDIRQLLRSALENSGK-SRPRHYIVIPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHhccC-CCccEEEEEcCCchHHHHHHHHHcCCEEC
Confidence 44667778888888999999998 3344444433 1111 000111111111 3566778889998764
No 201
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=22.20 E-value=2.6e+02 Score=21.53 Aligned_cols=69 Identities=16% Similarity=0.174 Sum_probs=43.6
Q ss_pred chhHHHHHHHHHHhCCceeecCcccCC-HHHHHHHHHHHhhcCCCCCCcEEEEecCCCC---CchHHHHHHHHHHHHhCC
Q 027753 23 ESNIRDLIINAIKIGYRHIDCAADYRN-EAEVGEALAEAFSTGLVKREDLFITTKLWNS---DHGHVLEACKDSLKKLQL 98 (219)
Q Consensus 23 ~~~~~~~l~~A~~~Gi~~~Dta~~Yg~-e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~---~~~~i~~~~~~sl~~Lg~ 98 (219)
++...-++..|-+.|+.+|=.|..||. ....-+.+. + . -+++++|.-... +...+...+++-|+..|.
T Consensus 13 ~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemve-----g--~-lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa 84 (186)
T COG1751 13 DETLEIAVERAKELGIKHIVVASSTGYTALKALEMVE-----G--D-LKVVVVTHHAGFEEKGTQEMDEEVRKELKERGA 84 (186)
T ss_pred HHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcc-----c--C-ceEEEEEeecccccCCceecCHHHHHHHHHcCc
Confidence 344556778888999999999999883 222222222 1 1 246666654322 345677888888998885
Q ss_pred C
Q 027753 99 D 99 (219)
Q Consensus 99 d 99 (219)
+
T Consensus 85 ~ 85 (186)
T COG1751 85 K 85 (186)
T ss_pred e
Confidence 4
No 202
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=22.20 E-value=4.6e+02 Score=21.74 Aligned_cols=149 Identities=7% Similarity=-0.061 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhCCceeecCcccCC---HH--HHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCCc
Q 027753 26 IRDLIINAIKIGYRHIDCAADYRN---EA--EVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDY 100 (219)
Q Consensus 26 ~~~~l~~A~~~Gi~~~Dta~~Yg~---e~--~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d~ 100 (219)
..+.++.--+.|..+|..++.-+. .. .++..+++. .| -+....--+...++..+...+... ..+|++.
T Consensus 17 l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~--~g----~~~i~Hlt~r~~n~~~l~~~L~~~-~~~Gi~n 89 (272)
T TIGR00676 17 LWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKE--TG----IPTVPHLTCIGATREEIREILREY-RELGIRH 89 (272)
T ss_pred HHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHh--cC----CCeeEEeeecCCCHHHHHHHHHHH-HHCCCCE
Confidence 334444445678899999887662 22 233333321 02 112221112234556666666644 6677443
Q ss_pred ccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHc-CCccEEEecC-H----------HHHHHH
Q 027753 101 LDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSM-GLVRSIGIRL-N----------FVCVHC 168 (219)
Q Consensus 101 lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvS~-~----------~~l~~~ 168 (219)
++.+-. |.... ++ . ..+ ..+.++.+-++.+++. |. -.||+.. | +++..+
T Consensus 90 --vL~l~G-D~~~~---~~--~--~~~--------~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L 150 (272)
T TIGR00676 90 --ILALRG-DPPKG---EG--T--PTP--------GGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENL 150 (272)
T ss_pred --EEEeCC-CCCCC---CC--C--CCC--------CCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHH
Confidence 232332 22110 00 0 000 0122244444444443 33 4677654 2 234444
Q ss_pred Hhc----CCceeeeeecCcchhhhHHHHHHHHHhcCceE
Q 027753 169 LVY----IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKL 203 (219)
Q Consensus 169 ~~~----~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i 203 (219)
.++ ....+-|.-|+. ..-..+++.|++.||.+
T Consensus 151 ~~K~~aGA~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~ 186 (272)
T TIGR00676 151 KRKVDAGADYAITQLFFDN---DDYYRFVDRCRAAGIDV 186 (272)
T ss_pred HHHHHcCCCeEeeccccCH---HHHHHHHHHHHHcCCCC
Confidence 444 334444555543 33567888999997654
No 203
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=22.12 E-value=4.7e+02 Score=21.87 Aligned_cols=16 Identities=0% Similarity=0.250 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCceEEe
Q 027753 190 KTLDQWQVDTSLKLMR 205 (219)
Q Consensus 190 ~~l~~~~~~~gi~i~~ 205 (219)
.+++++|+++|+.+..
T Consensus 118 ~~~i~~a~~~G~~v~~ 133 (280)
T cd07945 118 REVIEYAIKNGIEVNI 133 (280)
T ss_pred HHHHHHHHhCCCEEEE
Confidence 4568999999987654
No 204
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=22.05 E-value=5e+02 Score=22.08 Aligned_cols=148 Identities=11% Similarity=0.036 Sum_probs=83.4
Q ss_pred CchhHHHHHHHHHHhCCceeecCcccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHhCCCcc
Q 027753 22 DESNIRDLIINAIKIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKLQLDYL 101 (219)
Q Consensus 22 ~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~Lg~d~l 101 (219)
+.++..+.+....+.|++.|=.--.-..+...=+++++. ++.-++.|=-. ..++.+... .+++|. ..
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv~~~~d~~~v~~vr~~-----~~~~~l~vDaN-~~~~~~~a~-----~~~~l~--~~ 198 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKITPQIMHQLVKLRRLR-----FPQIPLVIDAN-ESYDLQDFP-----RLKELD--RY 198 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeCCchhHHHHHHHHHh-----CCCCcEEEECC-CCCCHHHHH-----HHHHHh--hC
Confidence 345566777777888999773211001222333455553 22222333222 223444321 133442 23
Q ss_pred cEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCcc-EEEecC--HHHHHHHHhcCCceeee
Q 027753 102 DLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVR-SIGIRL--NFVCVHCLVYIIPAFLF 178 (219)
Q Consensus 102 Dl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~--~~~l~~~~~~~~p~v~q 178 (219)
++.++-.|-. .+.+..+.++++.-.+. ..|=|. ...+.++++.....+.|
T Consensus 199 ~~~~iEeP~~---------------------------~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~ 251 (324)
T TIGR01928 199 QLLYIEEPFK---------------------------IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVIN 251 (324)
T ss_pred CCcEEECCCC---------------------------hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEE
Confidence 5566666532 23567788888876654 233332 77788887766677778
Q ss_pred eecCcch-hhhHHHHHHHHHhcCceEEecCcc
Q 027753 179 KLSFPLA-VIVEKTLDQWQVDTSLKLMRGSQF 209 (219)
Q Consensus 179 ~~~~~~~-~~~~~~l~~~~~~~gi~i~~~sp~ 209 (219)
.....+. -..-..+...|+.+|+.++..+.+
T Consensus 252 ~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~ 283 (324)
T TIGR01928 252 IKPGRLGGLTEVQKAIETCREHGAKVWIGGML 283 (324)
T ss_pred eCcchhcCHHHHHHHHHHHHHcCCeEEEcceE
Confidence 7765443 233578999999999999876654
No 205
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=22.03 E-value=42 Score=27.03 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.4
Q ss_pred HHhCCceeecCcccCC
Q 027753 34 IKIGYRHIDCAADYRN 49 (219)
Q Consensus 34 ~~~Gi~~~Dta~~Yg~ 49 (219)
.-.|.++|+|++.||.
T Consensus 197 sv~G~ryF~c~p~yGg 212 (234)
T KOG3206|consen 197 SVNGKRYFECAPKYGG 212 (234)
T ss_pred cccceEeeecCCccCC
Confidence 3469999999999973
No 206
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.02 E-value=3.9e+02 Score=20.93 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=41.2
Q ss_pred HHHHHHHcCC-ccEEEecC-HHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcC
Q 027753 144 AMEDLVSMGL-VRSIGIRL-NFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTS 200 (219)
Q Consensus 144 ~l~~l~~~G~-ir~iGvS~-~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~g 200 (219)
.-.-|...|. |.++|... ++.+.+.+....|.++.+-+..-. ...-..+++.+++.|
T Consensus 104 v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 104 VVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEG 163 (197)
T ss_pred HHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcC
Confidence 3345677887 88899888 899988888888888776654332 223477888888884
No 207
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=21.85 E-value=1.6e+02 Score=26.94 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=35.0
Q ss_pred EEecC-HHHHHHHHhcCCceeeeeecCcchh-hhHHHHHHHHHhcCceEEe
Q 027753 157 IGIRL-NFVCVHCLVYIIPAFLFKLSFPLAV-IVEKTLDQWQVDTSLKLMR 205 (219)
Q Consensus 157 iGvS~-~~~l~~~~~~~~p~v~q~~~~~~~~-~~~~~l~~~~~~~gi~i~~ 205 (219)
=|++| ..+++.+-....|.|+-++-++-+. ..-..+.++|.++|+.+..
T Consensus 353 ~G~aNL~~Hi~Nikkfgvp~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~~~l 403 (554)
T COG2759 353 KGFANLLKHIENIKKFGVPVVVAINKFPTDTEAEIAAIEKLCEEHGVEVAL 403 (554)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeccCCCCCHHHHHHHHHHHHHcCCceee
Confidence 36788 7777777666667777777666553 3346789999999987754
No 208
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=21.81 E-value=2.9e+02 Score=22.25 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=38.7
Q ss_pred CcccC--CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC---------CchHHHHHHHHHHHHhCCCcccEEEeecCCC
Q 027753 44 AADYR--NEAEVGEALAEAFSTGLVKREDLFITTKLWNS---------DHGHVLEACKDSLKKLQLDYLDLYLVHFPVA 111 (219)
Q Consensus 44 a~~Yg--~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~---------~~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~ 111 (219)
+.+|+ +.+.+.+|.++ ..+++..+.|++.. ..+.+.+.+-+.++-|| +.+..+++.-|-.
T Consensus 26 ~TFY~~P~~~t~~~W~~~-------~p~~F~F~vK~~~~iTH~~~l~~~~~~~~~~F~~~~~~L~-~klg~iL~Q~Pps 96 (230)
T PF01904_consen 26 STFYRIPSPETVARWREQ-------TPEGFRFSVKAPQLITHERRLRDCAEELWRRFLEALEPLG-EKLGPILFQFPPS 96 (230)
T ss_dssp HHCCSSS-HHHHHHHHCT-------S-TT-EEEEE--CCCCCCCHCGSSHHHHHHHHHHHCHHHH-T-EEEEEEE--TT
T ss_pred cccCCCCCHHHHHHHHhh-------CCCCeEEEEeccHHheecccccccHHHHHHHHHHHHHHHh-hcceEEEEEcCCC
Confidence 34676 68888888776 45789999999543 23455355666899999 9999999998754
No 209
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=21.69 E-value=3.9e+02 Score=20.69 Aligned_cols=88 Identities=22% Similarity=0.249 Sum_probs=49.2
Q ss_pred ceeccccCCchhHHHHHHHHHHhCCceeecCcccC----CHHHHHHHHHHHhhcCCCCCCcEEEEe-c-----------C
Q 027753 14 IGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYR----NEAEVGEALAEAFSTGLVKREDLFITT-K-----------L 77 (219)
Q Consensus 14 lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg----~e~~vg~al~~~~~~~~~~R~~~~I~t-K-----------~ 77 (219)
+-+|+-..+..+-.+.|... .|+.|+||-..+. ....+|+-.+..+..|.+..++++..+ + +
T Consensus 4 iilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~ 81 (178)
T COG0563 4 LILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGF 81 (178)
T ss_pred EEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeE
Confidence 45665444444333333333 8999999988885 356677777777666644333322100 0 0
Q ss_pred ---CCCCchHHHHHHHHHHHHhCCCcccEE
Q 027753 78 ---WNSDHGHVLEACKDSLKKLQLDYLDLY 104 (219)
Q Consensus 78 ---~~~~~~~i~~~~~~sl~~Lg~d~lDl~ 104 (219)
+....-..-+.+++.|+++| -.+|..
T Consensus 82 I~dg~PR~~~qa~~l~r~l~~~g-~~~d~v 110 (178)
T COG0563 82 ILDGFPRTLCQARALKRLLKELG-VRLDMV 110 (178)
T ss_pred EEeCCCCcHHHHHHHHHHHHHcC-CCcceE
Confidence 11123455677888888877 455543
No 210
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=21.63 E-value=6.8e+02 Score=23.64 Aligned_cols=31 Identities=10% Similarity=-0.149 Sum_probs=24.9
Q ss_pred CCccEEEec-C--HHHHHHHHhcCCceeeeeecC
Q 027753 152 GLVRSIGIR-L--NFVCVHCLVYIIPAFLFKLSF 182 (219)
Q Consensus 152 G~ir~iGvS-~--~~~l~~~~~~~~p~v~q~~~~ 182 (219)
..++.+||- | ++.+.++++...++++|.+-.
T Consensus 55 ~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 55 AGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 357789997 4 888888887788899999853
No 211
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=21.55 E-value=3.6e+02 Score=20.34 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=68.1
Q ss_pred ccceeccccCC-chhHHHHHHHHH-HhCCceeecCcccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHH
Q 027753 12 PIIGLGVWRMD-ESNIRDLIINAI-KIGYRHIDCAADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEAC 89 (219)
Q Consensus 12 s~lglG~~~~~-~~~~~~~l~~A~-~~Gi~~~Dta~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~ 89 (219)
|++-++...++ .+...+.+..|+ +.|+..+.+.-.-..++.+-.|+.+ .-++...+-.. -.+...-..+
T Consensus 13 prvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--------dv~vIgvSsl~-g~h~~l~~~l 83 (143)
T COG2185 13 PRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--------DVDVIGVSSLD-GGHLTLVPGL 83 (143)
T ss_pred ceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--------CCCEEEEEecc-chHHHHHHHH
Confidence 44445544443 344467788887 6688888765544457777777664 23344444332 2356778888
Q ss_pred HHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCccEEEecC
Q 027753 90 KDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVRSIGIRL 161 (219)
Q Consensus 90 ~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 161 (219)
-+.|+..|.+.+=++ .-..-+. +...+|++.|.-+.++..+
T Consensus 84 ve~lre~G~~~i~v~-~GGvip~------------------------------~d~~~l~~~G~~~if~pgt 124 (143)
T COG2185 84 VEALREAGVEDILVV-VGGVIPP------------------------------GDYQELKEMGVDRIFGPGT 124 (143)
T ss_pred HHHHHHhCCcceEEe-ecCccCc------------------------------hhHHHHHHhCcceeeCCCC
Confidence 899999998766522 2222111 1256788888888888887
No 212
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=21.48 E-value=5.5e+02 Score=23.21 Aligned_cols=69 Identities=9% Similarity=-0.012 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCcc-----EEEecC------------HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceE
Q 027753 141 TWHAMEDLVSMGLVR-----SIGIRL------------NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKL 203 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir-----~iGvS~------------~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i 203 (219)
=++.|.+|.++|+|. +++..+ ++-..++.+....+|+-...=..|.+.-..+....++.||++
T Consensus 288 PlD~LreLe~EG~IG~l~~~fy~t~G~gt~~~~a~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPv 367 (431)
T TIGR01917 288 PVDVLRDLEKEGKIGELFKYFYSTTGNGTAVANSKQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred eHHHHHHHHHcCCcccccCeeEEccCCCccHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 357789999999995 445544 222223332233444444322444455677788889999999
Q ss_pred EecCcc
Q 027753 204 MRGSQF 209 (219)
Q Consensus 204 ~~~sp~ 209 (219)
+-..-+
T Consensus 368 V~i~~~ 373 (431)
T TIGR01917 368 VHICTV 373 (431)
T ss_pred EEEeec
Confidence 875543
No 213
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=21.21 E-value=5.2e+02 Score=22.02 Aligned_cols=112 Identities=15% Similarity=0.051 Sum_probs=56.9
Q ss_pred cCCchhHHHHHHHHHHhCCceeecCcccC---CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHH----------H
Q 027753 20 RMDESNIRDLIINAIKIGYRHIDCAADYR---NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHV----------L 86 (219)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg---~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i----------~ 86 (219)
.++.++..+.++.+.+.|++.|-.+.... ....+-+.++...+.+ + .+ +++..++..+ .
T Consensus 71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~--~----~i--~~~~~s~~ei~~~~~~~g~~~ 142 (340)
T TIGR03699 71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARF--P----HI--HIHSFSPVEIVYIAKKEGLSL 142 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHC--C----Cc--CCCCCCHHHHHHHhccCCCCH
Confidence 34678888888888899998777643221 2333444444421111 1 11 1222222222 1
Q ss_pred HHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCC
Q 027753 87 EACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL 153 (219)
Q Consensus 87 ~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 153 (219)
+..-+.|+..|++.++.. .++...+ . ..+ . ..+...+..+.+++++.+++.|.
T Consensus 143 ~e~l~~Lk~aG~~~~~~~---g~E~~~~--------~-~~~-~-~~~~~~s~~~~l~~i~~a~~~Gi 195 (340)
T TIGR03699 143 REVLERLKEAGLDSIPGG---GAEILSD--------R-VRK-I-ISPKKISSEEWLEVMETAHKLGL 195 (340)
T ss_pred HHHHHHHHHcCCCcCCCC---cccccCH--------H-HHH-h-hCCCCCCHHHHHHHHHHHHHcCC
Confidence 455566777788876421 1111100 0 000 0 01122346778999999999986
No 214
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=21.16 E-value=3.6e+02 Score=20.18 Aligned_cols=45 Identities=4% Similarity=0.119 Sum_probs=33.0
Q ss_pred CCCcEEEEecCCCC-CchHHHHHHHHHHHHhC--CCcccEEEeecCCC
Q 027753 67 KREDLFITTKLWNS-DHGHVLEACKDSLKKLQ--LDYLDLYLVHFPVA 111 (219)
Q Consensus 67 ~R~~~~I~tK~~~~-~~~~i~~~~~~sl~~Lg--~d~lDl~~lh~p~~ 111 (219)
+|=.+.|+-|++.. ..+.+++.+.++++... ....|++++..+..
T Consensus 46 ~RlG~sVSKKvg~AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~ 93 (138)
T PRK00730 46 CKVGITVSKKFGKAHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNS 93 (138)
T ss_pred ceEEEEEecccccchhHHHHHHHHHHHHHHhhcccCCceEEEEecccc
Confidence 46667888887654 56788888888887663 35689999987643
No 215
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=21.11 E-value=2.9e+02 Score=23.80 Aligned_cols=47 Identities=11% Similarity=-0.224 Sum_probs=33.8
Q ss_pred EEec-C----HHHHHHHHhc---CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCc
Q 027753 157 IGIR-L----NFVCVHCLVY---IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 157 iGvS-~----~~~l~~~~~~---~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
|.-| | ++.++.+++. .+|-++-+... .-+.+.+.|+++|..+++.+|
T Consensus 129 Id~s~n~~kD~evleaale~~~g~~pLInSat~e-----n~~~i~~lA~~y~~~Vva~s~ 183 (319)
T PRK04452 129 IGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEED-----NYKKIAAAAMAYGHAVIAWSP 183 (319)
T ss_pred EecCCCCCCCHHHHHHHHHHhCCCCCEEEECCHH-----HHHHHHHHHHHhCCeEEEEcH
Confidence 6666 2 8888888877 33655544422 156789999999999999886
No 216
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.10 E-value=5.6e+02 Score=23.14 Aligned_cols=69 Identities=7% Similarity=-0.057 Sum_probs=42.0
Q ss_pred HHHHHHHHHHcCCcc-----EEEecC------------HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceE
Q 027753 141 TWHAMEDLVSMGLVR-----SIGIRL------------NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKL 203 (219)
Q Consensus 141 ~~~~l~~l~~~G~ir-----~iGvS~------------~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i 203 (219)
=++.|.+|.++|+|. +++..+ ++-..++.+....+|+-...=..|...-..+....++.||++
T Consensus 288 PlD~LreLekEG~IG~L~~~fyst~G~gt~~~~a~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPv 367 (431)
T TIGR01918 288 PVDVLRDYEKEGKIGELHEYFYSTVGNGTTVAESKQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPV 367 (431)
T ss_pred eHHHHHHHHHcCCcccccCeeEEcCCCCchHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCE
Confidence 357789999999985 455533 222223333234455444322444555677888889999999
Q ss_pred EecCcc
Q 027753 204 MRGSQF 209 (219)
Q Consensus 204 ~~~sp~ 209 (219)
+-..-+
T Consensus 368 v~~~~~ 373 (431)
T TIGR01918 368 VHMCTV 373 (431)
T ss_pred EEEeec
Confidence 876543
No 217
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=21.05 E-value=4.7e+02 Score=21.43 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=28.1
Q ss_pred ecCCCCccccceeccccCCchhHHHHHHHHHHhCCceeecC
Q 027753 4 TLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCA 44 (219)
Q Consensus 4 ~~~~g~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta 44 (219)
.++.|.+.+. |.++.++..++++.-.+.|+..++..
T Consensus 7 TlRDG~Q~~~-----~~~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 7 TLRDGMHAVR-----HQFTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred CCCcCcccCC-----eecCHHHHHHHHHHHHHcCCCEEEee
Confidence 4667777643 34566888999999999999999997
No 218
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=20.94 E-value=2.7e+02 Score=18.59 Aligned_cols=57 Identities=11% Similarity=0.132 Sum_probs=33.5
Q ss_pred HHHHHHcCCccEEEecCHHHHHHHHhc--CCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCc
Q 027753 145 MEDLVSMGLVRSIGIRLNFVCVHCLVY--IIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 145 l~~l~~~G~ir~iGvS~~~~l~~~~~~--~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
++++++.|++ .+| .++..++++. ..-.++-....+ ...+.+.++|++++|+++-+..
T Consensus 3 ~~~~~ragkl-~~G---~~~v~kai~~gkaklViiA~D~~~---~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 3 YEKVSQAKSI-VIG---TKQTVKALKRGSVKEVVVAEDADP---RLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred hHHHHhcCCE-EEc---HHHHHHHHHcCCeeEEEEECCCCH---HHHHHHHHHHHHcCCCEEEECC
Confidence 4566777754 222 4555555555 322333333332 3467888999999999876653
No 219
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=20.91 E-value=6.2e+02 Score=22.75 Aligned_cols=74 Identities=19% Similarity=0.129 Sum_probs=40.1
Q ss_pred CCCCchHHHHHHHHHHHHhCCCcccEEEeec-CCCCCCCCCCCcCCcCCCCCccccc-ccccHHHHH-HHHHHHHHcCCc
Q 027753 78 WNSDHGHVLEACKDSLKKLQLDYLDLYLVHF-PVATKHTGVGTTDSALDADGVLEID-TTISLETTW-HAMEDLVSMGLV 154 (219)
Q Consensus 78 ~~~~~~~i~~~~~~sl~~Lg~d~lDl~~lh~-p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~l~~l~~~G~i 154 (219)
...+.+.+++.++..++ |+.+++++|.+.- |... ....-.++....+ ......+.+ .+.+.|.+.|.
T Consensus 225 PgqT~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~--------l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy- 294 (449)
T PRK09058 225 PGQTPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTP--------LAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW- 294 (449)
T ss_pred CCCCHHHHHHHHHHHHh-cCCCEEEEeccccCCCCH--------HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-
Confidence 34477778888777665 8999999998753 3211 1110011111111 111112233 44567778887
Q ss_pred cEEEecC
Q 027753 155 RSIGIRL 161 (219)
Q Consensus 155 r~iGvS~ 161 (219)
+.+++||
T Consensus 295 ~~yeis~ 301 (449)
T PRK09058 295 RQLSNSH 301 (449)
T ss_pred eEEeeee
Confidence 5689988
No 220
>PRK07094 biotin synthase; Provisional
Probab=20.85 E-value=5.1e+02 Score=21.79 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=63.4
Q ss_pred CCchhHHHHHHHHHHhCCceeecC----cccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHHh
Q 027753 21 MDESNIRDLIINAIKIGYRHIDCA----ADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKKL 96 (219)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~Dta----~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~L 96 (219)
++.++..+.++.+.+.|++.|-.. +.| ....+-+.++... .+.++.+..-....+. ..-+.|+..
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~-~~~~l~~l~~~i~-----~~~~l~i~~~~g~~~~-----e~l~~Lk~a 138 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYY-TDEKIADIIKEIK-----KELDVAITLSLGERSY-----EEYKAWKEA 138 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-CHHHHHHHHHHHH-----ccCCceEEEecCCCCH-----HHHHHHHHc
Confidence 467788888888889999977432 223 3344555555531 1123444322222222 222346667
Q ss_pred CCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCcc----EEEecC--HHHHHHHHh
Q 027753 97 QLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLVR----SIGIRL--NFVCVHCLV 170 (219)
Q Consensus 97 g~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ir----~iGvS~--~~~l~~~~~ 170 (219)
|++.+- +..+...+ .-+.. .......++.+++++.+++.|.-- -+|+.. .+++.+.++
T Consensus 139 G~~~v~----~glEs~~~----~~~~~--------i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~ 202 (323)
T PRK07094 139 GADRYL----LRHETADK----ELYAK--------LHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDIL 202 (323)
T ss_pred CCCEEE----eccccCCH----HHHHH--------hCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHH
Confidence 766543 23222210 00000 111234678889999999999722 245533 555554444
Q ss_pred c
Q 027753 171 Y 171 (219)
Q Consensus 171 ~ 171 (219)
.
T Consensus 203 ~ 203 (323)
T PRK07094 203 F 203 (323)
T ss_pred H
Confidence 3
No 221
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.78 E-value=5.9e+02 Score=22.50 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHc-CC---ccEEEecC---HHHHHHHHhc
Q 027753 138 LETTWHAMEDLVSM-GL---VRSIGIRL---NFVCVHCLVY 171 (219)
Q Consensus 138 ~~~~~~~l~~l~~~-G~---ir~iGvS~---~~~l~~~~~~ 171 (219)
++.++++++-|.+. |. -|+|=||+ +..+.++.+.
T Consensus 184 ydnV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~ 224 (371)
T PRK14461 184 YDRWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANE 224 (371)
T ss_pred HHHHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhc
Confidence 56788888888775 32 57888888 7777777764
No 222
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=20.78 E-value=3e+02 Score=26.43 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=36.0
Q ss_pred HhCCceeec--CcccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC-CchHHHHHHHHHHHHhCCCcccEE
Q 027753 35 KIGYRHIDC--AADYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNS-DHGHVLEACKDSLKKLQLDYLDLY 104 (219)
Q Consensus 35 ~~Gi~~~Dt--a~~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~-~~~~i~~~~~~sl~~Lg~d~lDl~ 104 (219)
+.||...|. .+.||+++.+-+.++.. ....+.|..-+... +.+.-. +..+.+. .-+|-|+|
T Consensus 112 D~gyDi~d~~Idp~~GT~eDf~~L~~~A------h~~G~~vi~DlVpnHTs~ghd--F~lAr~~-~~~Y~g~Y 175 (688)
T TIGR02455 112 DGNFDRISFDIDPLLGSEEELIQLSRMA------AAHNAITIDDIIPAHTGKGAD--FRLAELA-HGDYPGLY 175 (688)
T ss_pred CCCCCcccCccCcccCCHHHHHHHHHHH------HHCCCEEEEEeCCCCCCCCcc--hHHHhhc-CCCCCCce
Confidence 456666665 56778888888888775 33446666555332 211111 4444555 44899999
No 223
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=20.76 E-value=1.5e+02 Score=25.18 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=31.6
Q ss_pred chHHHHHHHHHHHHhCCCcccEEEeecCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCCc
Q 027753 82 HGHVLEACKDSLKKLQLDYLDLYLVHFPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGLV 154 (219)
Q Consensus 82 ~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~i 154 (219)
.+...+.+++.+++||++ .|.+.-.. +. .....+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~tt-~~------------------------~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRTT-SP------------------------RHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeCC-CH------------------------HHHHHHHHHHHHHHHCCCE
Confidence 356777889999999985 56542211 00 0134577889999999998
No 224
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=20.73 E-value=5.9e+02 Score=22.45 Aligned_cols=123 Identities=12% Similarity=0.089 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCceeecCcccC------------CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHH
Q 027753 28 DLIINAIKIGYRHIDCAADYR------------NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKK 95 (219)
Q Consensus 28 ~~l~~A~~~Gi~~~Dta~~Yg------------~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~ 95 (219)
+.++...++|+|.+.....-+ +.+.+-++++...+.| +..=.+.+..=+...+.+.+++.++..++
T Consensus 116 e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G-~~~v~~dlI~GlPgqt~e~~~~tl~~~~~- 193 (400)
T PRK07379 116 EQLQGYRSLGVNRVSLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAG-IENFSLDLISGLPHQTLEDWQASLEAAIA- 193 (400)
T ss_pred HHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcC-CCeEEEEeecCCCCCCHHHHHHHHHHHHc-
Confidence 445555566777665433322 2223334444432223 21112233333344567777777776664
Q ss_pred hCCCcccEEEeec-CCCCCCCCCCCcCCcCCCCCcccccccccHHHHH-HHHHHHHHcCCccEEEecC
Q 027753 96 LQLDYLDLYLVHF-PVATKHTGVGTTDSALDADGVLEIDTTISLETTW-HAMEDLVSMGLVRSIGIRL 161 (219)
Q Consensus 96 Lg~d~lDl~~lh~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~G~ir~iGvS~ 161 (219)
|+.++|.++.+.- |... ....-..+....+......+.+ .+.+.|.+.|.. ++++||
T Consensus 194 l~p~~is~y~L~~~pgT~--------l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisn 252 (400)
T PRK07379 194 LNPTHLSCYDLVLEPGTA--------FGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISN 252 (400)
T ss_pred CCCCEEEEecceecCCch--------hHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeh
Confidence 8889998887753 2211 1100011111111111122333 456778888985 689999
No 225
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=20.71 E-value=1.4e+02 Score=21.67 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=18.7
Q ss_pred HHHHHHHHcCCccEEEecC--HHHHHHH
Q 027753 143 HAMEDLVSMGLVRSIGIRL--NFVCVHC 168 (219)
Q Consensus 143 ~~l~~l~~~G~ir~iGvS~--~~~l~~~ 168 (219)
+...+++++|+ +++|++. .++...+
T Consensus 85 eeI~~~v~~GK-~AFGft~~hie~vvP~ 111 (117)
T PF10941_consen 85 EEIRKEVAEGK-KAFGFTAQHIEQVVPV 111 (117)
T ss_pred HHHHHHHHcCC-eeeeccHHHHHHHHHH
Confidence 45568999999 7999998 5555443
No 226
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=20.71 E-value=3.1e+02 Score=19.36 Aligned_cols=47 Identities=11% Similarity=-0.069 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCceeeeeecCcchhhhHHHHHHHHHhcCceEEecCc
Q 027753 162 NFVCVHCLVYIIPAFLFKLSFPLAVIVEKTLDQWQVDTSLKLMRGSQ 208 (219)
Q Consensus 162 ~~~l~~~~~~~~p~v~q~~~~~~~~~~~~~l~~~~~~~gi~i~~~sp 208 (219)
.+++..++....|.++-+..-.-.+...+++.++++++||++....-
T Consensus 41 ~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 41 PEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred HHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 66776666533366665554332244567888999999998876554
No 227
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=20.59 E-value=8.3e+02 Score=24.16 Aligned_cols=62 Identities=6% Similarity=-0.027 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHc--CCccEEEecC-HHHHHHHHhcCCceeeeeecCcch-hhhHHHHHHHHHhcCceE
Q 027753 139 ETTWHAMEDLVSM--GLVRSIGIRL-NFVCVHCLVYIIPAFLFKLSFPLA-VIVEKTLDQWQVDTSLKL 203 (219)
Q Consensus 139 ~~~~~~l~~l~~~--G~ir~iGvS~-~~~l~~~~~~~~p~v~q~~~~~~~-~~~~~~l~~~~~~~gi~i 203 (219)
.+.+++|.+..++ ..+..|.+++ .+.+...+. --+..+.+..+. ....+-|.+.|++.|+.+
T Consensus 134 ~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIr---SRc~~v~F~~l~~~~l~~~L~~il~~EGv~i 199 (824)
T PRK07764 134 PQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIR---SRTHHYPFRLVPPEVMRGYLERICAQEGVPV 199 (824)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHH---hheeEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 4577888888887 8899999998 655444332 234455555553 222345566777778753
No 228
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=20.53 E-value=5.8e+02 Score=22.27 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=26.6
Q ss_pred cCCCCccccceeccccCCchhHHHHHHHHHHhCCceeecCcc
Q 027753 5 LNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAAD 46 (219)
Q Consensus 5 ~~~g~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~ 46 (219)
+++|.+.+...| +.++..++++.-.+.|++.|+....
T Consensus 54 lRDG~Q~~g~~~-----s~e~Ki~ia~~L~~~GV~~IEvGs~ 90 (347)
T PLN02746 54 PRDGLQNEKNIV-----PTSVKVELIQRLVSSGLPVVEATSF 90 (347)
T ss_pred CCccCcCCCCCC-----CHHHHHHHHHHHHHcCCCEEEECCC
Confidence 455555554433 4578888888888999999998743
No 229
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=20.49 E-value=5.8e+02 Score=22.27 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=60.5
Q ss_pred cCCchhHHHHHHHHHHhCCceeecCc----ccCCHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHH
Q 027753 20 RMDESNIRDLIINAIKIGYRHIDCAA----DYRNEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKK 95 (219)
Q Consensus 20 ~~~~~~~~~~l~~A~~~Gi~~~Dta~----~Yg~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~ 95 (219)
.++.++..+.++.+.+.|++.|--.. ..-.-..+.+.++...+. ++ + |..+..+.+.+.+ ..|+.
T Consensus 103 ~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~--~p--~--i~i~~g~lt~e~l-----~~Lk~ 171 (371)
T PRK09240 103 TLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREY--FS--S--VSIEVQPLSEEEY-----AELVE 171 (371)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHh--CC--C--ceeccCCCCHHHH-----HHHHH
Confidence 34778888999999999999774321 111345566666653111 11 2 3334444444444 57888
Q ss_pred hCCCcccEEEee-cCCCCCCCCCCCcCCcCCCCCcccccccccHHHHHHHHHHHHHcCC
Q 027753 96 LQLDYLDLYLVH-FPVATKHTGVGTTDSALDADGVLEIDTTISLETTWHAMEDLVSMGL 153 (219)
Q Consensus 96 Lg~d~lDl~~lh-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~G~ 153 (219)
.|++.+-+.+=- +++.+.. . +.......+++.+++++.+++.|.
T Consensus 172 aGv~r~~i~lET~~~~~~~~---------i-----~~~g~~h~~~~rl~~i~~a~~aG~ 216 (371)
T PRK09240 172 LGLDGVTVYQETYNPATYAK---------H-----HLRGPKRDFEYRLETPERAGRAGI 216 (371)
T ss_pred cCCCEEEEEEecCCHHHHHH---------h-----CcCCCCCCHHHHHHHHHHHHHcCC
Confidence 898765443211 1111100 0 000112347889999999999995
No 230
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=20.33 E-value=4.3e+02 Score=20.72 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=45.9
Q ss_pred CCchhHHHHHHHHHHhCCceeecCcccC-----CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCCCchHHHHHHHHHHHH
Q 027753 21 MDESNIRDLIINAIKIGYRHIDCAADYR-----NEAEVGEALAEAFSTGLVKREDLFITTKLWNSDHGHVLEACKDSLKK 95 (219)
Q Consensus 21 ~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg-----~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~~~~i~~~~~~sl~~ 95 (219)
...+.....++.|++.|.+-+|...++| .+..+-+-+++..+.- ..--+.+..-....+.+.+.+.++ ....
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~--~g~~lkvI~e~~~l~~~~i~~a~r-ia~e 142 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEAC--GGAPLKVILETGLLTDEEIIKACE-IAIE 142 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhc--CCCeEEEEEecCCCCHHHHHHHHH-HHHH
Confidence 3445556668999999999999998887 3454555555543322 111122222222334566666555 4556
Q ss_pred hCCCcccE
Q 027753 96 LQLDYLDL 103 (219)
Q Consensus 96 Lg~d~lDl 103 (219)
+|.|+|=.
T Consensus 143 ~GaD~IKT 150 (203)
T cd00959 143 AGADFIKT 150 (203)
T ss_pred hCCCEEEc
Confidence 78775443
No 231
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=20.27 E-value=8.5e+02 Score=24.11 Aligned_cols=60 Identities=10% Similarity=-0.012 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHc--CCccEEEecC-HHHHHHHHhcCCceeeeeecCcchh-hhHHHHHHHHHhcCce
Q 027753 140 TTWHAMEDLVSM--GLVRSIGIRL-NFVCVHCLVYIIPAFLFKLSFPLAV-IVEKTLDQWQVDTSLK 202 (219)
Q Consensus 140 ~~~~~l~~l~~~--G~ir~iGvS~-~~~l~~~~~~~~p~v~q~~~~~~~~-~~~~~l~~~~~~~gi~ 202 (219)
+.+++|-+..++ ..++.|-++| ...+..- +.--+.++.+..+.. ...+-|...|++.||.
T Consensus 134 ~A~NALLKtLEEPP~~v~FILaTtd~~KIp~T---IrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 134 HAFNAMLKTLEEPPPHVKFILATTDPQKIPVT---VLSRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred HHHHHHHHHHHhcCCCeEEEEEECChhhccch---hhhheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 467777777776 5899999999 5554322 223455666666642 2234455666666764
No 232
>PLN02623 pyruvate kinase
Probab=20.19 E-value=7.4e+02 Score=23.39 Aligned_cols=93 Identities=10% Similarity=0.013 Sum_probs=56.0
Q ss_pred ecCCCCccccceeccccCCchhHHHHHHHHHHhCCceeecCcccCCH--HHHHHHHHHHhhcCCCCCCcEEEEecCCCCC
Q 027753 4 TLNNGFKMPIIGLGVWRMDESNIRDLIINAIKIGYRHIDCAADYRNE--AEVGEALAEAFSTGLVKREDLFITTKLWNSD 81 (219)
Q Consensus 4 ~~~~g~~vs~lglG~~~~~~~~~~~~l~~A~~~Gi~~~Dta~~Yg~e--~~vg~al~~~~~~~~~~R~~~~I~tK~~~~~ 81 (219)
+.+.|..+|-..+....+++.+... ++.+++.|+.++-.+..=..+ ..+.+.++. ...++.|..|+-..
T Consensus 259 ~s~KgvNlpg~~~~lp~lTekD~~d-i~f~~~~~vD~ialSFVr~a~DV~~~r~~l~~-------~~~~~~iiakIEt~- 329 (581)
T PLN02623 259 KSRRHLNVRGKSATLPSITEKDWED-IKFGVENKVDFYAVSFVKDAQVVHELKDYLKS-------CNADIHVIVKIESA- 329 (581)
T ss_pred cCCCCCCCCCCcCCCCCCCHHHHHH-HHHHHHcCCCEEEECCCCCHHHHHHHHHHHHH-------cCCcceEEEEECCH-
Confidence 3455666666666665666666555 789999999998765332222 223444443 23467888888332
Q ss_pred chHHHHHHHHHHHHhCCCcccEEEeecCCCC
Q 027753 82 HGHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (219)
Q Consensus 82 ~~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~ 112 (219)
.-.+.+++.++ .+|.+++-.-|-.
T Consensus 330 --eaVeNldeIl~-----g~DgImIgrgDLg 353 (581)
T PLN02623 330 --DSIPNLHSIIT-----ASDGAMVARGDLG 353 (581)
T ss_pred --HHHHhHHHHHH-----hCCEEEECcchhh
Confidence 23334555555 4688888765543
No 233
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=20.01 E-value=5.2e+02 Score=21.54 Aligned_cols=93 Identities=15% Similarity=0.163 Sum_probs=59.3
Q ss_pred ccceeccccCCc--------hhHHHHHHHHHHhCCceeec-CcccC--CHHHHHHHHHHHhhcCCCCCCcEEEEecCCCC
Q 027753 12 PIIGLGVWRMDE--------SNIRDLIINAIKIGYRHIDC-AADYR--NEAEVGEALAEAFSTGLVKREDLFITTKLWNS 80 (219)
Q Consensus 12 s~lglG~~~~~~--------~~~~~~l~~A~~~Gi~~~Dt-a~~Yg--~e~~vg~al~~~~~~~~~~R~~~~I~tK~~~~ 80 (219)
-.||.++|.... +...+-....+...+|.++- +.+|. +++.+-+|.++ ..+++.-+.|++..
T Consensus 3 i~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~p~~~t~~~W~~~-------~p~~FrFsvK~~~~ 75 (263)
T COG1801 3 IYIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAPPSPETVLRWAEE-------TPDDFRFSVKAPRA 75 (263)
T ss_pred eEEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCCCCHHHHHHHHHh-------CCCCeEEEEEeccc
Confidence 457777776632 22223233444545665542 22565 68888888886 67899999999533
Q ss_pred ------Cc---hHHHHHHHHHHHHhCCCcccEEEeecCCCC
Q 027753 81 ------DH---GHVLEACKDSLKKLQLDYLDLYLVHFPVAT 112 (219)
Q Consensus 81 ------~~---~~i~~~~~~sl~~Lg~d~lDl~~lh~p~~~ 112 (219)
.. ..+.+.+.+-++.|| +.+..+++.-|-..
T Consensus 76 iTH~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 76 ITHQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred ccchhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 22 345555555566777 68999999988655
Done!