Query 027756
Match_columns 219
No_of_seqs 275 out of 1046
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 01:12:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gnf_A Transcription factor GA 99.7 6.4E-19 2.2E-23 118.0 4.4 44 137-183 3-46 (46)
2 2vut_I AREA, nitrogen regulato 99.7 5E-19 1.7E-23 116.9 3.5 42 139-183 2-43 (43)
3 3dfx_A Trans-acting T-cell-spe 99.7 7.1E-18 2.4E-22 119.8 5.3 47 136-185 5-51 (63)
4 4gat_A Nitrogen regulatory pro 99.7 6.1E-18 2.1E-22 121.2 4.8 48 136-186 7-54 (66)
5 2kae_A GATA-type transcription 99.7 5.1E-18 1.7E-22 123.1 -0.6 48 136-185 6-53 (71)
6 4hc9_A Trans-acting T-cell-spe 99.5 4.7E-15 1.6E-19 116.5 5.2 47 136-185 57-103 (115)
7 4hc9_A Trans-acting T-cell-spe 99.4 2E-13 6.9E-18 107.2 4.9 45 137-184 4-48 (115)
8 3ogl_Q JAZ1 incomplete degron 98.6 1.3E-08 4.5E-13 57.0 2.2 21 60-80 1-21 (21)
9 3ogk_Q JAZ1 incomplete degron 98.1 7.4E-07 2.5E-11 50.6 1.1 22 65-87 1-22 (22)
10 1dl6_A Transcription factor II 66.9 3.1 0.00011 28.0 2.2 35 136-175 9-43 (58)
11 1pft_A TFIIB, PFTFIIBN; N-term 62.1 1.5 5.1E-05 28.3 -0.2 34 138-176 5-38 (50)
12 2yrk_A Zinc finger homeobox pr 61.9 1.8 6.2E-05 29.4 0.2 20 156-175 7-26 (55)
13 3cw2_K Translation initiation 56.7 4.4 0.00015 32.2 1.7 31 138-171 103-133 (139)
14 2d74_B Translation initiation 53.2 4.9 0.00017 32.3 1.4 30 139-171 105-134 (148)
15 1k81_A EIF-2-beta, probable tr 51.5 1.9 6.5E-05 26.5 -1.0 29 140-171 2-30 (36)
16 1nee_A EIF-2-beta, probable tr 50.5 4.6 0.00016 32.0 0.8 29 139-170 103-131 (138)
17 4g92_A HAPB protein; transcrip 46.7 5.8 0.0002 27.7 0.8 22 87-108 41-63 (64)
18 2ds5_A CLPX, ATP-dependent CLP 44.2 12 0.00043 24.7 2.1 30 139-170 12-41 (51)
19 2yrc_A Protein transport prote 42.5 7.4 0.00025 26.4 0.8 37 133-171 4-42 (59)
20 2owa_A Arfgap-like finger doma 41.0 18 0.0006 28.6 2.9 39 136-178 34-72 (138)
21 1ovx_A ATP-dependent CLP prote 41.0 12 0.00042 26.2 1.8 31 139-171 19-49 (67)
22 2iqj_A Stromal membrane-associ 39.8 19 0.00066 28.1 2.9 39 136-178 25-63 (134)
23 3k7a_M Transcription initiatio 39.1 12 0.0004 33.2 1.7 11 162-172 42-52 (345)
24 2k1p_A Zinc finger RAN-binding 38.3 14 0.00048 22.0 1.5 26 135-170 3-28 (33)
25 2crw_A ARF GAP 3, ADP-ribosyla 37.4 21 0.00072 28.5 2.8 39 136-178 27-65 (149)
26 3cng_A Nudix hydrolase; struct 37.0 9.5 0.00033 30.0 0.7 30 138-169 3-32 (189)
27 2crr_A Stromal membrane-associ 33.9 27 0.00092 27.5 2.9 39 136-178 27-65 (141)
28 2e29_A ATP-dependent RNA helic 33.8 14 0.00047 27.2 1.1 28 15-43 54-81 (92)
29 2g2k_A EIF-5, eukaryotic trans 31.9 8 0.00027 31.7 -0.5 32 139-173 97-130 (170)
30 2olm_A Nucleoporin-like protei 30.1 32 0.0011 27.0 2.7 37 137-177 24-60 (140)
31 3sub_A ADP-ribosylation factor 30.0 35 0.0012 27.7 3.0 38 137-178 21-58 (163)
32 2cr8_A MDM4 protein; ZF-ranbp 29.2 23 0.0008 23.7 1.5 21 133-155 6-26 (53)
33 2p57_A GTPase-activating prote 29.1 24 0.00082 28.1 1.9 39 136-178 35-73 (144)
34 3dwd_A ADP-ribosylation factor 28.5 38 0.0013 27.0 3.0 39 136-178 36-74 (147)
35 3j20_Y 30S ribosomal protein S 27.9 12 0.0004 24.5 -0.2 34 133-172 14-47 (50)
36 2e9h_A EIF-5, eukaryotic trans 26.9 12 0.00041 30.3 -0.3 32 139-172 104-136 (157)
37 1twf_L ABC10-alpha, DNA-direct 26.6 13 0.00046 26.0 -0.0 32 133-171 23-54 (70)
38 2zjr_Z 50S ribosomal protein L 25.8 19 0.00065 24.5 0.6 26 135-171 27-52 (60)
39 1qyp_A RNA polymerase II; tran 24.7 8.3 0.00028 25.4 -1.4 37 138-174 15-55 (57)
40 3efo_B SEC24 related gene fami 24.0 23 0.00077 35.0 1.0 34 136-171 96-129 (770)
41 3o47_A ADP-ribosylation factor 23.5 35 0.0012 29.4 2.0 38 137-178 36-73 (329)
42 1pcx_A Protein transport prote 23.3 24 0.00082 35.0 1.0 32 138-171 112-143 (810)
43 2b0o_E UPLC1; arfgap, structur 23.3 50 0.0017 27.7 3.0 38 136-177 40-77 (301)
44 1lko_A Rubrerythrin all-iron(I 23.1 12 0.00041 30.5 -1.0 26 138-171 155-180 (191)
45 2j9u_B VPS36, vacuolar protein 22.7 21 0.00072 25.6 0.4 35 136-171 15-49 (76)
46 1m2v_B SEC24, protein transpor 22.2 26 0.00089 35.5 1.1 32 138-171 228-259 (926)
47 3eh2_A Protein transport prote 21.6 24 0.00082 34.8 0.6 34 136-171 92-125 (766)
48 2kdx_A HYPA, hydrogenase/ureas 21.4 25 0.00086 26.3 0.6 29 135-171 70-99 (119)
49 3v2d_5 50S ribosomal protein L 20.9 24 0.00082 24.0 0.4 25 137-173 29-53 (60)
50 4bbr_M Transcription initiatio 20.9 20 0.00068 31.9 -0.1 14 133-146 37-50 (345)
51 3h0g_L DNA-directed RNA polyme 20.1 37 0.0013 23.3 1.2 37 136-179 19-55 (63)
No 1
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.75 E-value=6.4e-19 Score=118.01 Aligned_cols=44 Identities=41% Similarity=0.786 Sum_probs=40.5
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCcc
Q 027756 137 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 183 (219)
Q Consensus 137 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~ 183 (219)
....|+||++ ++||+||+||+|+ +|||||||||++++++||+.+
T Consensus 3 ~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~ 46 (46)
T 1gnf_A 3 EARECVNCGA--TATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR 46 (46)
T ss_dssp CSCCCTTTCC--CCCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred CCCCCCCcCC--CCCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence 3567999999 7899999999997 999999999999999999874
No 2
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.75 E-value=5e-19 Score=116.95 Aligned_cols=42 Identities=48% Similarity=0.939 Sum_probs=39.2
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCcc
Q 027756 139 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSK 183 (219)
Q Consensus 139 ~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~ 183 (219)
..|++|++ ++||+||+||+|+ +|||||||+|++|+++||++.
T Consensus 2 ~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l 43 (43)
T 2vut_I 2 TTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL 43 (43)
T ss_dssp CCCSSSCC--CCCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred CcCCccCC--CCCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence 57999999 7899999999997 999999999999999999863
No 3
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.71 E-value=7.1e-18 Score=119.80 Aligned_cols=47 Identities=30% Similarity=0.641 Sum_probs=42.7
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA 185 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~ 185 (219)
.....|.||++ +.||+||+||+|+ +|||||||+|++++.+||+.+..
T Consensus 5 ~~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~ 51 (63)
T 3dfx_A 5 RAGTSCANCQT--TTTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKK 51 (63)
T ss_dssp CTTCCCTTTCC--SCCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCC
T ss_pred CCCCcCCCcCC--CCCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCC
Confidence 34567999999 7899999999997 99999999999999999998863
No 4
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.71 E-value=6.1e-18 Score=121.16 Aligned_cols=48 Identities=44% Similarity=0.833 Sum_probs=43.8
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAAP 186 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~~ 186 (219)
.....|+||++ ++||+||+||+|. +|||||||||++++++||+.+...
T Consensus 7 ~~~~~C~~C~t--~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~ 54 (66)
T 4gat_A 7 NGPTTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTD 54 (66)
T ss_dssp SSSCCCTTTCC--CCCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCS
T ss_pred CCCCCCCCCCC--CCCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccc
Confidence 45688999999 7899999999997 999999999999999999998743
No 5
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.66 E-value=5.1e-18 Score=123.14 Aligned_cols=48 Identities=19% Similarity=0.350 Sum_probs=40.4
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA 185 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~ 185 (219)
.....|+||++ ++||+||+||.+..+|||||||||++++++||+....
T Consensus 6 ~~~~~C~nC~t--t~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~ 53 (71)
T 2kae_A 6 KKSFQCSNCSV--TETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVN 53 (71)
T ss_dssp --CCCCSSSCC--SCCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHH
T ss_pred CCCCcCCccCC--CCCCccccCCCCCCccchHHHHHHHHhCCCCCcccch
Confidence 45678999999 7899999965555599999999999999999998763
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.53 E-value=4.7e-15 Score=116.53 Aligned_cols=47 Identities=30% Similarity=0.644 Sum_probs=43.1
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKAA 185 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~~ 185 (219)
.....|+||++ +.||+||+||+| .+|||||||||++|+.+||+.+..
T Consensus 57 ~~~~~C~~C~t--~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~ 103 (115)
T 4hc9_A 57 RAGTSCANCQT--TTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKK 103 (115)
T ss_dssp CTTCCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCC
T ss_pred cccccCCCcCC--CCcceeEECCCC-CCcchHHHHHHHHhCCCCCccccc
Confidence 34578999999 789999999999 799999999999999999999874
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.39 E-value=2e-13 Score=107.18 Aligned_cols=45 Identities=44% Similarity=0.773 Sum_probs=40.0
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCccC
Q 027756 137 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSKA 184 (219)
Q Consensus 137 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r~~~~~ 184 (219)
....|.||++ ++||+||+||+| .+|||||||||+.++.++|+.+.
T Consensus 4 ~~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~Kp 48 (115)
T 4hc9_A 4 MGRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKP 48 (115)
T ss_dssp --CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSC
T ss_pred CCCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhcccccccccc
Confidence 3578999999 789999999999 69999999999999999998654
No 8
>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*
Probab=98.62 E-value=1.3e-08 Score=57.02 Aligned_cols=21 Identities=52% Similarity=0.529 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHHHHhhhhc.....
Q 027756 60 NQNNRRLASLIRFREKRKERN..... 80 (219)
Q Consensus 60 ~l~~~R~~sl~rf~eKrk~R~..... 80 (219)
|+|++|++||+||+||||+|+
T Consensus 1 dlp~aRk~SLqRFleKRk~R~..... 21 (21)
T 3ogl_Q 1 ELPIARRASLHRFLEKRKDRVxxxxx 26 (26)
T ss_pred CcchhHHHHHHHHHHHhhccC.....
Confidence 679999999999999999985
No 9
>3ogk_Q JAZ1 incomplete degron peptide; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana}
Probab=98.10 E-value=7.4e-07 Score=50.58 Aligned_cols=22 Identities=59% Similarity=0.691 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhccccceec....
Q 027756 65 RLASLIRFREKRKERNFEKKIRY.... 87 (219)
Q Consensus 65 R~~sl~rf~eKrk~R~~~k~~rY.... 87 (219)
|++||+||+||||+|+..+ ..|
T Consensus 1 Rk~SLqRFleKRk~R~~~~-~PY.... 22 (22)
T 3ogk_Q 1 RRASLHRFLEKRKDRVTSK-APYxxxx 26 (26)
T ss_pred CchhHHHHHHHHHHHhhcc-CCC....
Confidence 6899999999999999865 344
No 10
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=66.93 E-value=3.1 Score=28.01 Aligned_cols=35 Identities=17% Similarity=0.457 Sum_probs=24.7
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhc
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 175 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~ 175 (219)
.....|..|+. +++......| .+.|..||+-+..+
T Consensus 9 l~~~~Cp~C~~----~~lv~D~~~g-e~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 9 LPRVTCPNHPD----AILVEDYRAG-DMICPECGLVVGDR 43 (58)
T ss_dssp CSCCSBTTBSS----SCCEECSSSC-CEECTTTCCEECCS
T ss_pred cccccCcCCCC----CceeEeCCCC-eEEeCCCCCEEecc
Confidence 33457999987 3455555556 69999999988654
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=62.06 E-value=1.5 Score=28.25 Aligned_cols=34 Identities=21% Similarity=0.556 Sum_probs=21.9
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHHHHhcC
Q 027756 138 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKG 176 (219)
Q Consensus 138 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~ 176 (219)
...|.+|+. +++-.....| ...|..||+-|..+-
T Consensus 5 ~~~CP~C~~----~~l~~d~~~g-elvC~~CG~v~~e~~ 38 (50)
T 1pft_A 5 QKVCPACES----AELIYDPERG-EIVCAKCGYVIEENI 38 (50)
T ss_dssp CCSCTTTSC----CCEEEETTTT-EEEESSSCCBCCCCC
T ss_pred cEeCcCCCC----cceEEcCCCC-eEECcccCCcccccc
Confidence 356999976 3443333334 689999998875443
No 12
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=61.87 E-value=1.8 Score=29.41 Aligned_cols=20 Identities=25% Similarity=0.866 Sum_probs=16.4
Q ss_pred cCCCCCcccchhhhHHHHhc
Q 027756 156 RGPEGPRTLCNACGLMWANK 175 (219)
Q Consensus 156 ~Gp~G~~~LCNaCGl~~~~~ 175 (219)
.+|+||++-|.-||..|.-+
T Consensus 7 ~~~~~P~~eC~lC~vkYs~r 26 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYSAR 26 (55)
T ss_dssp CCCCCCCSCCTTTTCCCCSS
T ss_pred CCCCCCCccccccCcccccc
Confidence 57889889999999888644
No 13
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=56.71 E-value=4.4 Score=32.16 Aligned_cols=31 Identities=23% Similarity=0.447 Sum_probs=20.8
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 138 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 138 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
=..|..|+. .+|-+-+++-.= -.-|+|||-.
T Consensus 103 yVlC~~C~s--PdT~l~k~~r~~-~l~C~ACGa~ 133 (139)
T 3cw2_K 103 YVECSTCKS--LDTILKKEKKSW-YIVCLACGAQ 133 (139)
T ss_dssp CSSCCSSSS--SCCCSCSSCSTT-TSSCCC----
T ss_pred eeECCCCCC--cCcEEEEeCCeE-EEEecCCCCC
Confidence 367999999 578888875333 4789999964
No 14
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=53.22 E-value=4.9 Score=32.28 Aligned_cols=30 Identities=30% Similarity=0.692 Sum_probs=22.3
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 139 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 139 ~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
..|..|+. .+|-+-+.+-.- -.-|+|||-.
T Consensus 105 VlC~~C~s--PdT~L~k~~r~~-~l~C~ACGa~ 134 (148)
T 2d74_B 105 VICPVCGS--PDTKIIKRDRFH-FLKCEACGAE 134 (148)
T ss_dssp SSCSSSCC--TTCCCCBSSSSB-CCCCSSSCCC
T ss_pred EECCCCCC--cCcEEEEeCCEE-EEEecCCCCC
Confidence 46999999 568888865332 4789999853
No 15
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=51.50 E-value=1.9 Score=26.52 Aligned_cols=29 Identities=34% Similarity=0.844 Sum_probs=20.3
Q ss_pred cccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 140 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 140 ~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
.|..|+- .+|-+-+++..- -.-|+|||-.
T Consensus 2 lC~~C~~--peT~l~~~~~~~-~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGK--PDTKIIKEGRVH-LLKCMACGAI 30 (36)
T ss_dssp CCSSSCS--CEEEEEEETTEE-EEEEETTTEE
T ss_pred CCcCCCC--CCcEEEEeCCcE-EEEhhcCCCc
Confidence 4999999 568888764222 2459999964
No 16
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=50.51 E-value=4.6 Score=32.00 Aligned_cols=29 Identities=31% Similarity=0.796 Sum_probs=22.3
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhH
Q 027756 139 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 170 (219)
Q Consensus 139 ~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl 170 (219)
..|..|+. .+|-+-+.+-.= -.-|+|||-
T Consensus 103 VlC~~C~s--PdT~l~k~~r~~-~l~C~ACGa 131 (138)
T 1nee_A 103 VICHECNR--PDTRIIREGRIS-LLKCEACGA 131 (138)
T ss_dssp HHHTCCSS--CSSCCEEETTTT-EEECSTTSC
T ss_pred EECCCCCC--cCcEEEEcCCeE-EEEccCCCC
Confidence 57999999 578888875332 478999985
No 17
>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*
Probab=46.67 E-value=5.8 Score=27.69 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.1
Q ss_pred ccccHHHHHHHHh-hcCccccCC
Q 027756 87 YTVRKEVALRMQR-NKGQFTSAK 108 (219)
Q Consensus 87 Y~~Rk~~A~~r~R-~kGrf~s~~ 108 (219)
+++|..+|++|+| ..|+|.+..
T Consensus 41 hESRH~HAm~R~Rg~gGRFl~~~ 63 (64)
T 4g92_A 41 HESRHNHAMRRPRGPGGRFLTAD 63 (64)
T ss_dssp CHHHHHHHHHSCBCTTSCBCCCC
T ss_pred hhHHHHHHhcCCcCCCCccccCC
Confidence 6999999999999 777998763
No 18
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=44.17 E-value=12 Score=24.66 Aligned_cols=30 Identities=27% Similarity=0.695 Sum_probs=20.9
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhH
Q 027756 139 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 170 (219)
Q Consensus 139 ~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl 170 (219)
..|+-||-+..+....=.|| | ...||-|=.
T Consensus 12 ~~CSFCGk~~~ev~~LIaGp-g-v~IC~eCi~ 41 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVD 41 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECS-S-CEEEHHHHH
T ss_pred cEecCCCCCHHHhcccCCCC-C-CEehHHHHH
Confidence 57999999654444454576 3 479999954
No 19
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=42.49 E-value=7.4 Score=26.42 Aligned_cols=37 Identities=22% Similarity=0.453 Sum_probs=30.5
Q ss_pred CCCcccccccc--cccccCCCCccccCCCCCcccchhhhHH
Q 027756 133 GSQNQDIVCRH--CGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 133 ~~~~~~~~C~~--C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
+.+....+|.. |++ ---|.++-...|....||-|+..
T Consensus 4 ~~~~~pvRC~r~~Cra--ylNP~~~~~~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 4 GSSGEPVLCSRTTCRA--VLNPLCQVDYRAKLWACNFCYQR 42 (59)
T ss_dssp SSCCCCCBCSCTTTCC--BCCTTSEEEGGGTEEECSSSCCE
T ss_pred cCCCCCcccCCCCCCe--EECCceEEECCCCEEEcccCCCc
Confidence 34566789998 999 56899999888888999999854
No 20
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=40.99 E-value=18 Score=28.57 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=32.1
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~ 178 (219)
..+..|..|+.. -|.|=.=.-| ..+|-.|.-..+.-|++
T Consensus 34 p~N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 72 (138)
T 2owa_A 34 PENRTCFDCESR---NPTWLSLSFA-VFICLNCSSDHRKMGVH 72 (138)
T ss_dssp GGGGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHTTCTT
T ss_pred cCCCcCCCCcCC---CCCeEEecCC-EEEhHhhhHHHhCCCCC
Confidence 346889999984 5999998888 69999999888776654
No 21
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=40.98 E-value=12 Score=26.17 Aligned_cols=31 Identities=26% Similarity=0.702 Sum_probs=21.4
Q ss_pred ccccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 139 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 139 ~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
..|+-||-+.......=.|| | ...||-|=..
T Consensus 19 ~~CSFCGK~e~eV~~LIaGp-g-vyICdeCI~~ 49 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGP-S-VYICDECVDL 49 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECS-S-CEEEHHHHHH
T ss_pred cEecCCCCCHHHHcccCCCC-C-CChhHHHHHH
Confidence 57999999644444444576 3 4899999644
No 22
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=39.81 E-value=19 Score=28.10 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=32.0
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~ 178 (219)
..+..|.+|+.. -|.|=.=.-| ..+|-.|.-..+.-|++
T Consensus 25 p~N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~lG~h 63 (134)
T 2iqj_A 25 EDNKFCADCQSK---GPRWASWNIG-VFICIRCAGIHRNLGVH 63 (134)
T ss_dssp GGGGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred cCCCcCCcCcCC---CCCeEEecCC-EEEhHhhhHHHhcCCCC
Confidence 457889999994 5999998888 69999998888776653
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=39.15 E-value=12 Score=33.21 Aligned_cols=11 Identities=36% Similarity=1.044 Sum_probs=5.4
Q ss_pred cccchhhhHHH
Q 027756 162 RTLCNACGLMW 172 (219)
Q Consensus 162 ~~LCNaCGl~~ 172 (219)
.+.|..||+-.
T Consensus 42 ~~vC~~CG~Vl 52 (345)
T 3k7a_M 42 DVVCALCGLVL 52 (345)
T ss_dssp SCCCSSSCCCC
T ss_pred CEecCCCCeEc
Confidence 34555555544
No 24
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=38.27 E-value=14 Score=21.98 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=18.0
Q ss_pred CcccccccccccccCCCCccccCCCCCcccchhhhH
Q 027756 135 QNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 170 (219)
Q Consensus 135 ~~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl 170 (219)
..+.|.|..|+.. .-.|| +-||.||.
T Consensus 3 ~~gDW~C~~C~~~---Nfa~R-------~~C~~C~~ 28 (33)
T 2k1p_A 3 SANDWQCKTCSNV---NWARR-------SECNMCNT 28 (33)
T ss_dssp SSSSCBCSSSCCB---CCTTC-------SBCSSSCC
T ss_pred CCCCcccCCCCCc---ccccc-------ccccccCC
Confidence 3457999999883 34444 68888874
No 25
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.40 E-value=21 Score=28.50 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=32.6
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~ 178 (219)
..+..|.+|+.. -|.|=.=.-| ..+|-.|--..+.-|++
T Consensus 27 p~N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (149)
T 2crw_A 27 PTNKVCFDCGAK---NPSWASITYG-VFLCIDCSGSHRSLGVH 65 (149)
T ss_dssp TTTSBCSSSCCB---SCCCEETTTT-EECCHHHHHHHHHHCTT
T ss_pred cCCCcCCCCcCC---CCCcEEeccC-EEEchhcchhhccCCCC
Confidence 357899999984 5999998888 69999998888877764
No 26
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=37.04 E-value=9.5 Score=30.02 Aligned_cols=30 Identities=27% Similarity=0.596 Sum_probs=22.7
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhh
Q 027756 138 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACG 169 (219)
Q Consensus 138 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCG 169 (219)
.+.|..||+ ..+...-.|..+....|-.||
T Consensus 3 ~~~C~~CG~--~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGG--EVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCC--BCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCC--ccccccccCCCCcceECCCCC
Confidence 468999999 445555566666678999999
No 27
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.90 E-value=27 Score=27.49 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=31.8
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~ 178 (219)
..+..|.+|+.. -|.|=.=.-| ..||-.|.-..+.-|++
T Consensus 27 p~N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 65 (141)
T 2crr_A 27 EDNKYCADCEAK---GPRWASWNIG-VFICIRCAGIHRNLGVH 65 (141)
T ss_dssp GGGSSCSSSCCS---SCCSEETTTT-EECCHHHHHHHHHHCTT
T ss_pred ccCCcCCCCCCC---CCCeEEeccC-eEEhhhhhHhHhcCCCC
Confidence 457899999984 5999988888 69999998887776643
No 28
>2e29_A ATP-dependent RNA helicase DDX50; ATP binding, hydrolase, nuclear protein, nucleotide-binding, RNA-binding, GUCT domain, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.5
Probab=33.80 E-value=14 Score=27.17 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=24.6
Q ss_pred CceEEEeccEEEEecCCCHHHHHHHHHHh
Q 027756 15 DQLTLSFQGQVYVFDSVSPEKVQAVLLLL 43 (219)
Q Consensus 15 ~qLTifY~G~v~Vfd~v~~~ka~~im~la 43 (219)
..+|+.=++.-.|| |||.+.+++|+...
T Consensus 54 ~~m~l~~d~~GavF-DvP~e~~~~~~~~~ 81 (92)
T 2e29_A 54 TRMCLLKGNMGVCF-DVPTTESERLQAEW 81 (92)
T ss_dssp EEEEECTTSSEEEE-EEEHHHHHHHHHHC
T ss_pred CeEEEecCCCEEEE-ECcHHHHHHHHhhC
Confidence 56888889999999 99999999999764
No 29
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=31.90 E-value=8 Score=31.73 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=22.2
Q ss_pred ccccccccccCCCCcccc--CCCCCcccchhhhHHHH
Q 027756 139 IVCRHCGISEKSTPMMRR--GPEGPRTLCNACGLMWA 173 (219)
Q Consensus 139 ~~C~~C~~~~~~Tp~wR~--Gp~G~~~LCNaCGl~~~ 173 (219)
-.|..|+. .+|-+-+. +..- -.-|+|||-..-
T Consensus 97 VlC~~C~s--PdT~L~k~~~~r~~-~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECEN--PETDLHVNPKKQTI-GNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSS--SCEEEEEETTTTEE-EEEETTTCCCCC
T ss_pred EECCCCCC--CccEEEEecCCCEE-EEEccccCCccc
Confidence 46999999 56888883 2222 357999996543
No 30
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=30.12 E-value=32 Score=27.03 Aligned_cols=37 Identities=16% Similarity=0.352 Sum_probs=29.5
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCC
Q 027756 137 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT 177 (219)
Q Consensus 137 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~ 177 (219)
.+..|.+|+.. -|.|=.=.-| ..+|-.|.-..+.-|+
T Consensus 24 ~N~~CaDCg~~---~P~WaS~n~G-vfiC~~CsgiHR~LG~ 60 (140)
T 2olm_A 24 HNRKCFDCDQR---GPTYVNMTVG-SFVCTSCSGSLRGLNP 60 (140)
T ss_dssp GGGSCTTTCSS---CCCEEETTTT-EEECHHHHHHHTTSSS
T ss_pred CCCcCCCCCCC---CCCceeeccC-EEEchhccchhccCCC
Confidence 35779999984 6999998888 6999999877665543
No 31
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=29.98 E-value=35 Score=27.73 Aligned_cols=38 Identities=29% Similarity=0.480 Sum_probs=31.3
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 027756 137 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178 (219)
Q Consensus 137 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~ 178 (219)
....|..|+.. -|.|=.=.-| ..||-.|.-..+.-|++
T Consensus 21 ~N~~CaDCga~---~P~WaS~nlG-vflCi~CSGiHR~LG~h 58 (163)
T 3sub_A 21 SNNKCFDCGIS---NPDWVSVNHG-IFLCINCSGVHRSLGVH 58 (163)
T ss_dssp GGGBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHTCTT
T ss_pred CCCccccCCCC---CCCeEEecCC-eeEHHhhhHHhcCCCCC
Confidence 46789999994 5999998888 69999998777776654
No 32
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=29.23 E-value=23 Score=23.66 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=16.9
Q ss_pred CCCcccccccccccccCCCCccc
Q 027756 133 GSQNQDIVCRHCGISEKSTPMMR 155 (219)
Q Consensus 133 ~~~~~~~~C~~C~~~~~~Tp~wR 155 (219)
......|.|..|.+ .++|+-|
T Consensus 6 ~~~eD~WkC~~C~k--~N~Pl~r 26 (53)
T 2cr8_A 6 SGSEDEWQCTECKK--FNSPSKR 26 (53)
T ss_dssp SCCSCCEECSSSCC--EECSSCC
T ss_pred CCCcceeecccccc--cCCCccc
Confidence 34566899999998 7899866
No 33
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=29.07 E-value=24 Score=28.08 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=31.9
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~ 178 (219)
..+..|.+|+.. -|.|=.=.-| ..+|-.|.-..+.-|+.
T Consensus 35 p~N~~CaDCga~---~P~WaS~n~G-vfiC~~CsgiHR~LG~h 73 (144)
T 2p57_A 35 PTNKACFDCGAK---NPSWASITYG-VFLCIDCSGVHRSLGVH 73 (144)
T ss_dssp GGGGBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCCCcCCCCcCC---CCCeEEeccC-EEEhhhchHHHcCCCCC
Confidence 356889999984 5999988888 68999999888877754
No 34
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=28.53 E-value=38 Score=27.04 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=31.9
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~ 178 (219)
..+..|..|+.. -|.|=.=.-| ..||-.|.-..+.-|..
T Consensus 36 p~N~~CaDCga~---~P~WaS~nlG-vfiC~~CSgiHR~LG~h 74 (147)
T 3dwd_A 36 DENNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGVH 74 (147)
T ss_dssp TTTTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCTT
T ss_pred cCCCccCCCCCC---CCCeEEeccc-EeEhHhhChHHhcCCCC
Confidence 346789999994 5999998888 69999999888776654
No 35
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.94 E-value=12 Score=24.52 Aligned_cols=34 Identities=26% Similarity=0.582 Sum_probs=22.9
Q ss_pred CCCcccccccccccccCCCCccccCCCCCcccchhhhHHH
Q 027756 133 GSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 172 (219)
Q Consensus 133 ~~~~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~ 172 (219)
......+.|..||.. -.+.. .+.+..|..||.-+
T Consensus 14 kv~~~~k~CP~CG~~----~fm~~--~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 14 KVIRKNKFCPRCGPG----VFMAD--HGDRWACGKCGYTE 47 (50)
T ss_dssp CEECSSEECSSSCSS----CEEEE--CSSEEECSSSCCEE
T ss_pred EEEEecccCCCCCCc----eEEec--CCCeEECCCCCCEE
Confidence 345567889999982 23433 34578999999643
No 36
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.94 E-value=12 Score=30.28 Aligned_cols=32 Identities=22% Similarity=0.469 Sum_probs=21.4
Q ss_pred ccccccccccCCCCccccCCCC-CcccchhhhHHH
Q 027756 139 IVCRHCGISEKSTPMMRRGPEG-PRTLCNACGLMW 172 (219)
Q Consensus 139 ~~C~~C~~~~~~Tp~wR~Gp~G-~~~LCNaCGl~~ 172 (219)
-.|..|+. .+|-+-+..-.+ --.-|+|||-..
T Consensus 104 VlC~~C~s--PdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 104 VLCPECEN--PETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp TSCTTTCC--SCCEEEEETTTTEEEEECSSSCCEE
T ss_pred EECCCCCC--CccEEEEecCCCEEEEEccCCCCCC
Confidence 46999999 568888621111 135799999654
No 37
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=26.65 E-value=13 Score=25.99 Aligned_cols=32 Identities=16% Similarity=0.434 Sum_probs=20.3
Q ss_pred CCCcccccccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 133 GSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 133 ~~~~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
+...-.-.|..||.. .... ++...-|..||-+
T Consensus 23 ~~~~v~Y~C~~CG~~--~e~~-----~~d~irCp~CG~R 54 (70)
T 1twf_L 23 RTATLKYICAECSSK--LSLS-----RTDAVRCKDCGHR 54 (70)
T ss_dssp --CCCCEECSSSCCE--ECCC-----TTSTTCCSSSCCC
T ss_pred CCceEEEECCCCCCc--ceeC-----CCCCccCCCCCce
Confidence 335567789999993 2222 2234689999983
No 38
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=25.85 E-value=19 Score=24.46 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=18.1
Q ss_pred CcccccccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 135 QNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 135 ~~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
......|.+||.. --+..+|..||.|
T Consensus 27 ~p~l~~c~~cG~~-----------~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 27 APNLTECPQCHGK-----------KLSHHICPNCGYY 52 (60)
T ss_dssp CCCCEECTTTCCE-----------ECTTBCCTTTCBS
T ss_pred CCCceECCCCCCE-----------eCCceEcCCCCcC
Confidence 3446679999983 1236899999933
No 39
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=24.68 E-value=8.3 Score=25.40 Aligned_cols=37 Identities=30% Similarity=0.648 Sum_probs=24.1
Q ss_pred cccccccccccCC--CCccccCCCCC--cccchhhhHHHHh
Q 027756 138 DIVCRHCGISEKS--TPMMRRGPEGP--RTLCNACGLMWAN 174 (219)
Q Consensus 138 ~~~C~~C~~~~~~--Tp~wR~Gp~G~--~~LCNaCGl~~~~ 174 (219)
...|..|+-.... +-+||...++. -..|..||-.|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 5779999973210 23688765552 2589999987753
No 40
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=23.97 E-value=23 Score=35.05 Aligned_cols=34 Identities=24% Similarity=0.518 Sum_probs=28.8
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
..+.+|..|++ ---|-.+-...|.+..||-|+..
T Consensus 96 ~~pvRC~rCra--yiNPf~~f~~~g~~w~Cn~C~~~ 129 (770)
T 3efo_B 96 SGPVRCNRCKA--YMCPFMQFIEGGRRYQCGFCNCV 129 (770)
T ss_dssp TCSCBCTTTCC--BSCTTCEEEGGGTEEECTTTCCE
T ss_pred CCCCccCCCCC--CcCCceEEecCCCEEEecccccc
Confidence 45789999999 55899888888889999999864
No 41
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=23.53 E-value=35 Score=29.43 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=31.1
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 027756 137 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTL 178 (219)
Q Consensus 137 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~ 178 (219)
.+..|..|+.. .|.|=.=.-| ..+|-.|.--.+.-|.+
T Consensus 36 ~n~~c~dc~~~---~~~~~~~~~~-~~~c~~c~~~hr~~~~~ 73 (329)
T 3o47_A 36 ENNVCFECGAF---NPQWVSVTYG-IWICLECSGRHRGLGVH 73 (329)
T ss_dssp TTTBCTTTCCB---SCCEEEGGGT-EEECHHHHHHHHHHCTT
T ss_pred CCCcCCCCCCC---CCCeEEecCC-EEEChhhhhhhcccCCC
Confidence 46789999994 5899888888 69999998888776654
No 42
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=23.32 E-value=24 Score=35.04 Aligned_cols=32 Identities=31% Similarity=0.578 Sum_probs=27.6
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 138 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 138 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
..+|..|++ ---|..+-...|....||-|+..
T Consensus 112 pvRC~~Cra--yiNPf~~~~~~g~~W~C~~C~~~ 143 (810)
T 1pcx_A 112 IVRCRRCRS--YMNPFVTFIEQGRRWRCNFCRLA 143 (810)
T ss_dssp CCBCTTTCC--BCCTTCEEETTTTEEECTTTCCE
T ss_pred CCccCCccC--EecCceEEeCCCCEEEccCCCCc
Confidence 689999999 55898888888888999999864
No 43
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=23.30 E-value=50 Score=27.74 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=30.2
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGT 177 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~ 177 (219)
..+..|..|+.. -|.|-.-.-| ..+|-.|--..+.-+.
T Consensus 40 ~~n~~c~dc~~~---~p~w~s~~~g-~~~c~~cs~~hr~lg~ 77 (301)
T 2b0o_E 40 PGNSQCCDCGAA---DPTWLSTNLG-VLTCIQCSGVHRELGV 77 (301)
T ss_dssp TTTTBCTTTCCB---SCCEEETTTT-EEECHHHHHHHHHHCT
T ss_pred CCCCcCCCCCCC---CCCeEEeecC-eEEcHHHHHHHHhhCC
Confidence 347889999994 4999999999 6999999666655453
No 44
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=23.14 E-value=12 Score=30.50 Aligned_cols=26 Identities=38% Similarity=0.889 Sum_probs=17.4
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 138 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 138 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
.|+|.+||-.. + |.+-| ..|-.||..
T Consensus 155 ~~~C~~CG~~~--~-----g~~~p-~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVH--E-----GTGAP-ELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEE--E-----EEECC-SBCTTTCCB
T ss_pred eEEECCCCCEe--e-----CCCCC-CCCCCCcCC
Confidence 69999999842 2 32332 389999863
No 45
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=22.72 E-value=21 Score=25.62 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=23.1
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
...|.|.-|..+ ..+|.+=.--..+..-|-+||+.
T Consensus 15 ~~tWVCpICsfs-N~v~s~fdp~~~~lPpC~aCGIk 49 (76)
T 2j9u_B 15 VSTWVCPICMVS-NETQGEFTKDTLPTPICINCGVP 49 (76)
T ss_dssp CEEEECTTTCCE-EEESSCCCTTCSSCCBCTTTCCB
T ss_pred ccceECcccccc-CcCccccCCCCCCCCcccccCcc
Confidence 347999999964 34555433222556789999974
No 46
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=22.16 E-value=26 Score=35.48 Aligned_cols=32 Identities=31% Similarity=0.578 Sum_probs=27.7
Q ss_pred cccccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 138 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 138 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
..+|..|++ ---|..+-...|....||-|+..
T Consensus 228 pvRC~rCrA--YiNPf~~~~~~g~~W~CnfC~~~ 259 (926)
T 1m2v_B 228 IVRCRRCRS--YMNPFVTFIEQGRRWRCNFCRLA 259 (926)
T ss_dssp CCBCSSSCC--BCCTTCEEETTTTEEECTTTCCE
T ss_pred CCccCCccC--EecCceEEeCCCCEEEccCCCCC
Confidence 689999999 55898888888889999999864
No 47
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=21.58 E-value=24 Score=34.83 Aligned_cols=34 Identities=24% Similarity=0.500 Sum_probs=28.0
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHH
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLM 171 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~ 171 (219)
..+.+|..|++ ---|-.+-...|.+..||-|+..
T Consensus 92 ~~pvRC~rCra--yiNPf~~f~~~g~~w~Cn~C~~~ 125 (766)
T 3eh2_A 92 SGPLRCNRCKA--YMCPFMQFIEGGRRFQCCFCSCI 125 (766)
T ss_dssp GCCCBCTTTCC--BCCTTCEEEGGGTEEECTTTCCE
T ss_pred CCCCccCCCCC--EeCCceEEecCCCEEEecccccc
Confidence 45789999999 55888887778888999999864
No 48
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=21.40 E-value=25 Score=26.30 Aligned_cols=29 Identities=17% Similarity=0.576 Sum_probs=19.5
Q ss_pred CcccccccccccccCCCCccccCCCCCcc-cchhhhHH
Q 027756 135 QNQDIVCRHCGISEKSTPMMRRGPEGPRT-LCNACGLM 171 (219)
Q Consensus 135 ~~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~-LCNaCGl~ 171 (219)
....++|.+||.. -.. +.+.. .|-.||-.
T Consensus 70 ~p~~~~C~~CG~~--~e~------~~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 70 EKVELECKDCSHV--FKP------NALDYGVCEKCHSK 99 (119)
T ss_dssp ECCEEECSSSSCE--ECS------CCSTTCCCSSSSSC
T ss_pred ccceEEcCCCCCE--EeC------CCCCCCcCccccCC
Confidence 3457899999983 233 22345 89999865
No 49
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=20.93 E-value=24 Score=23.96 Aligned_cols=25 Identities=32% Similarity=0.848 Sum_probs=17.5
Q ss_pred ccccccccccccCCCCccccCCCCCcccchhhhHHHH
Q 027756 137 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWA 173 (219)
Q Consensus 137 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~ 173 (219)
....|.+||... -+..+|..|| +|+
T Consensus 29 ~l~~c~~cGe~~-----------~~H~vc~~CG-~Y~ 53 (60)
T 3v2d_5 29 TLVPCPECKAMK-----------PPHTVCPECG-YYA 53 (60)
T ss_dssp CCEECTTTCCEE-----------CTTSCCTTTC-EET
T ss_pred ceeECCCCCCee-----------cceEEcCCCC-cCC
Confidence 356799999832 2357999999 443
No 50
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.86 E-value=20 Score=31.92 Aligned_cols=14 Identities=36% Similarity=0.890 Sum_probs=7.0
Q ss_pred CCCccccccccccc
Q 027756 133 GSQNQDIVCRHCGI 146 (219)
Q Consensus 133 ~~~~~~~~C~~C~~ 146 (219)
|...+...|..||.
T Consensus 37 D~~~G~~vC~~CGl 50 (345)
T 4bbr_M 37 RFSEGDVVCALCGL 50 (345)
T ss_dssp EGGGTEEEETTTCB
T ss_pred ECCCCcEEeCCCCC
Confidence 33444555555553
No 51
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=20.07 E-value=37 Score=23.34 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=24.6
Q ss_pred cccccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCC
Q 027756 136 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGTLR 179 (219)
Q Consensus 136 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~~~~~~r 179 (219)
.-.-.|..|+.. .... .+...-|.-||-+.-.+.+.+
T Consensus 19 ~v~Y~C~~Cg~~--~~l~-----~~~~iRC~~CG~RILyK~Rt~ 55 (63)
T 3h0g_L 19 TMIYLCADCGAR--NTIQ-----AKEVIRCRECGHRVMYKMRTK 55 (63)
T ss_dssp CCCCBCSSSCCB--CCCC-----SSSCCCCSSSCCCCCBCCCCC
T ss_pred CeEEECCCCCCe--eecC-----CCCceECCCCCcEEEEEecCC
Confidence 346789999993 3322 234588999997766555443
Done!