BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027757
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 153 bits (386), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 91/196 (46%), Positives = 118/196 (60%), Gaps = 8/196 (4%)
Query: 19 IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78
I++VE VK + D P + E A +GRSNVGKSSL+NAL +K +A SK PGKT+ I
Sbjct: 3 IRDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSI 61
Query: 79 NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKI 138
N +LVN +Y VDLPGYG+AK RM W + YF NR SL V LL+D +PPQ
Sbjct: 62 NFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDS 121
Query: 139 DLDCANWLGRNNIPLTFVFTKCDKMKVA-KGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
DL W+ NIP T V TK DK+K++ + ++ +E+ K F + Y + I TSS
Sbjct: 122 DLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK-----YGEY-TIIPTSS 175
Query: 198 VTGLGRDELLLHMSQL 213
VTG G ELL +S L
Sbjct: 176 VTGEGISELLDLISTL 191
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 104/188 (55%), Gaps = 5/188 (2%)
Query: 18 QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
++ + E V S+ + + P+ PE A+ GRSNVGKSS IN+L+ +K LA TS KPGKTQ
Sbjct: 2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61
Query: 78 INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
+N +++N + VD+PGYGFAK R W + Y RE L V+ ++D P
Sbjct: 62 LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121
Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
D+ +L IP+ + TK D K+ KG+ D++ K +Q + N I+ SS
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKAD--KIPKGKW-DKHAKVVRQTL--NIDPEDELILFSS 176
Query: 198 VTGLGRDE 205
T G+DE
Sbjct: 177 ETKKGKDE 184
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 115 bits (289), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 11 GPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSK 70
GP + + + F + +D P +PE A GRSN GKS+ IN L +K LA SK
Sbjct: 1 GPGSMAFLLHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASK 60
Query: 71 KPGKTQLINHFLVNKSW----YIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVL 126
PG+TQ IN+F V + ++VDLPGYG+A+ P + W Y R L G++
Sbjct: 61 TPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMI 120
Query: 127 LLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
L++DA P ++D W P+ + TKCDK+
Sbjct: 121 LMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKL 157
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 113 bits (283), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Query: 20 KEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN 79
++ FV S+ + P D E A GRSN GKSS +N L +K LA TSK PG+TQLIN
Sbjct: 7 QQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN 66
Query: 80 HFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID 139
F V +VDLPGYG+A+ P+ + W Y R+SL G+++L+D P + +D
Sbjct: 67 LFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD 126
Query: 140 LDCANWLGRNNIPLTFVFTKCDKMKVAKGRR 170
W +NI + + TK DK+ A G R
Sbjct: 127 QQMIEWAVDSNIAVLVLLTKADKL--ASGAR 155
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ---LINHFLVNKSWYIVDLPG 94
D + AI+GR NVGKS+L NA++ KE AL S PG T+ F+ + + VD G
Sbjct: 179 DAIKVAIVGRPNVGKSTLFNAIL-NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 237
Query: 95 YGF-AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL 153
++ T +S++ + + + V++++DA+ + D A R
Sbjct: 238 LRRKSRVEPRTVEKYSNYRVVDSIEKADV--VVIVLDATQGITRQDQRXAGLXERRGRAS 295
Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHHPPWIMTSSVTG 200
VF K D + V + +R DE F +L RE + + P I TS+ G
Sbjct: 296 VVVFNKWD-LVVHREKRYDE----FTKLFREKLYFIDYSPLIFTSADKG 339
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 8/124 (6%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKA 100
I+GR NVGKS+L N LV+KK+ A+ + G T+ V K++ +VD G F
Sbjct: 6 IVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGV-FDNP 63
Query: 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKC 160
D+ T RE+ + VL ++D K D A++L ++ + V K
Sbjct: 64 QDIISQKXKEVTLNXI--READL-VLFVVDGKRGITKEDESLADFLRKSTVDTILVANKA 120
Query: 161 DKMK 164
+ ++
Sbjct: 121 ENLR 124
>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|B Chain B, Crystal Structure Of A Probable Gtp-binding Protein Engb
pdb|2CXX|C Chain C, Crystal Structure Of A Probable Gtp-binding Protein Engb
Length = 190
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 46 GRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTR 105
GRSNVGKS+LI L KK K+PG T+ I + K+ I+D PG+GF
Sbjct: 8 GRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIE-IEWKNHKIIDXPGFGFXXGLPKEV 64
Query: 106 MDWSSFTKGYFL--NRESLVGVLLLIDASVPPQ-----------KIDLDCANWLGRNNIP 152
+ +F+ N +++ +L++D P+ ID++ +L +IP
Sbjct: 65 QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124
Query: 153 LTFVFTKCDKMK 164
K DK+K
Sbjct: 125 TIVAVNKLDKIK 136
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL----INHFLVNKSWYIVDLPGYGF 97
AI+G+ NVGKS+L+N L+ K +++ S K G T++ + + +D PG
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTK-VSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71
Query: 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDC-ANWLGRNNIPLTFV 156
K DV K E +L +IDA+ + D + N++ N P+ V
Sbjct: 72 PKKSDVLGHSMVEIAKQSL---EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128
Query: 157 FTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207
K DK+ AK N+ I + +P + S++ G DEL+
Sbjct: 129 INKIDKIGPAK------NVLPLIDEIHKKHPELTEIVPISALKGANLDELV 173
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL----INHFLVNKSWYIVDLPGYGF 97
AI+G+ NVGKS+L+N L+ K +++ S K G T++ + + +D PG
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTK-VSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 70
Query: 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDC-ANWLGRNNIPLTFV 156
K DV K E +L +IDA+ + D + N++ N P+ V
Sbjct: 71 PKKSDVLGHSMVEIAKQSL---EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 127
Query: 157 FTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207
K DK+ AK N+ I + +P + S++ G DEL+
Sbjct: 128 INKIDKIGPAK------NVLPLIDEIHKKHPELTEIVPISALKGANLDELV 172
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ--LINHFLVNKSWY-IVDLPGYGF 97
+F ++GR NVGKSSL+NA++ +E + S G T+ + F N+ + IVD G
Sbjct: 197 QFCLIGRPNVGKSSLVNAML-GEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 255
Query: 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVF 157
T +S ++R +V V+L + + Q D A + + V
Sbjct: 256 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHEAGKAVVIVV 313
Query: 158 TKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHPPWIMTSSVT 199
K D + + + +K F++ IR+++ + P + S++T
Sbjct: 314 NKWDAVD-----KDESTMKEFEENIRDHFQFLDYAPILFMSALT 352
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 23/173 (13%)
Query: 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ---LINHFLVNKSWYIVDLPGY 95
+P AI+GR NVGKS++ N + ++ +++ PG T+ + +N + ++D G
Sbjct: 23 KPVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 81
Query: 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTF 155
P + ++ + + + ++ +++ D + A L R P+
Sbjct: 82 DIGDEPFLAQIRQQA-----EIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVL 136
Query: 156 VFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDELL 207
K D ++ NI F L E YP S GLG +LL
Sbjct: 137 AVNKLDNTEMRA------NIYDFYSLGFGEPYP-------ISGTHGLGLGDLL 176
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 22/130 (16%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKS---WYIVDLPGYGFAKA 100
I+GR NVGKSSL N L++K+ A+ + PG T+ + +V + +VD G
Sbjct: 6 IVGRPNVGKSSLFNRLLKKRS-AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL----- 59
Query: 101 PDVTRMDWSS------FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLT 154
WS + E VL +D + D + A +L R P+
Sbjct: 60 -------WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVI 112
Query: 155 FVFTKCDKMK 164
V TK D K
Sbjct: 113 LVATKVDDPK 122
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 13/164 (7%)
Query: 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ--LINHFLVNKSWY-IVDLPGYGF 97
+F ++GR NVGKSSL+NA + +E + S G T+ + F N+ + IVD G
Sbjct: 177 QFCLIGRPNVGKSSLVNAXL-GEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRK 235
Query: 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVF 157
T +S ++R +V V+L + + Q D A + + V
Sbjct: 236 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHEAGKAVVIVV 293
Query: 158 TKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHPPWIMTSSVT 199
K D + + + K F++ IR+++ + P + S++T
Sbjct: 294 NKWDAVD-----KDESTXKEFEENIRDHFQFLDYAPILFXSALT 332
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 23/178 (12%)
Query: 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ---LINHFLVNKSWYIVDLPGY 95
+P AI+GR NVGKS++ N + ++ +++ PG T+ + +N + ++D G
Sbjct: 3 KPVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61
Query: 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTF 155
P + ++ + E+ V ++ ++ D + A L R P+
Sbjct: 62 DIGDEPFLAQIRQ----QAEIAXDEADV-IIFXVNGREGVTAADEEVAKILYRTKKPVVL 116
Query: 156 VFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
K D + NI F L E YP S GLG +LL +++
Sbjct: 117 AVNKLDNTEXRA------NIYDFYSLGFGEPYP-------ISGTHGLGLGDLLDAVAE 161
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 22/174 (12%)
Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
AI+G+ NVGKS+L+N L+ K ++ + + + L IV + G K D
Sbjct: 11 AIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD 70
Query: 103 VTRMDWSSFTKGYFLNRE------SLVGVLLLIDASVPPQKIDLDCANWLG--RNNIPLT 154
G F+++E + V+ ++D PP D A L +P+
Sbjct: 71 AL---------GEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPIL 121
Query: 155 FVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL 208
V K D K P+E +K++ +L+ E P + V L D L L
Sbjct: 122 LVGNKLDAAKY-----PEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLAL 170
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
I+G NVGKS+LIN L KK +A T +PG T V K ++D PG + K D
Sbjct: 125 IIGIPNVGKSTLINRLA-KKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFED 182
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 37/175 (21%)
Query: 43 AILGRSNVGKSSLINALVRKKEL-----ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGF 97
A+ G NVGK+SL NAL K+ +T +K + +N ++DLPG
Sbjct: 9 ALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTIN----LIDLPG--- 61
Query: 98 AKAPDVTRMDWSS----FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL 153
+ +SS + Y L ++ +++L+ SV P++ ++ L
Sbjct: 62 -----TYSLGYSSIDEKIARDYLLKGDA--DLVILVADSVNPEQ------------SLYL 102
Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH--PPWIMTSSVTGLGRDEL 206
+ +K + DE K+ ++ R H P + TSSVTG G +EL
Sbjct: 103 LLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEEL 157
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 37/175 (21%)
Query: 43 AILGRSNVGKSSLINALVRKKEL-----ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGF 97
A+ G NVGK+SL NAL K+ +T +K + +N ++DLPG
Sbjct: 9 ALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTIN----LIDLPG--- 61
Query: 98 AKAPDVTRMDWSS----FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL 153
+ +SS + Y L ++ +++L+ SV P++ ++ L
Sbjct: 62 -----TYSLGYSSIDEKIARDYLLKGDA--DLVILVADSVNPEQ------------SLYL 102
Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH--PPWIMTSSVTGLGRDEL 206
+ +K + DE K+ ++ R H P + TSSVTG G +EL
Sbjct: 103 LLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEEL 157
>pdb|1EGA|A Chain A, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1EGA|B Chain B, Crystal Structure Of A Widely Conserved Gtpase Era
pdb|1X1L|X Chain X, Interaction Of Era,A Gtpase Protein, With The 3'minor
Domain Of The 16s Rrna Within The Thermus Thermophilus
30s Subunit.
pdb|3IEU|A Chain A, Crystal Structure Of Era In Complex With Gdp
pdb|3IEU|B Chain B, Crystal Structure Of Era In Complex With Gdp
Length = 301
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 12/72 (16%)
Query: 42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-------KSWYIVDLPG 94
AI+GR NVGKS+L+N L+ +K +++TS+K T+ H +V ++ Y VD PG
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTR---HRIVGIHTEGAYQAIY-VDTPG 65
Query: 95 YGFAKAPDVTRM 106
+ + R+
Sbjct: 66 LHMEEKRAINRL 77
>pdb|1X18|X Chain X, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 292
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 12/72 (16%)
Query: 42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-------KSWYIVDLPG 94
AI+GR NVGKS+L+N L+ +K +++TS+ K Q H +V ++ Y VD PG
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQK-ISITSR---KAQTTRHRIVGIHTEGAYQAIY-VDTPG 62
Query: 95 YGFAKAPDVTRM 106
+ + R+
Sbjct: 63 LHMEEKRAINRL 74
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
Query: 39 RPEFAILGRSNVGKSSLINALVRK-----KELALTSKKPGKTQLINHFLVNKSWYIVDLP 93
R + GR NVGKSS +NALV + + A T+ P + H + +VD P
Sbjct: 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI--GPVTLVDTP 91
Query: 94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL 153
G DV + K + + G+L+ A P + D N IP
Sbjct: 92 GLD-----DVGELGRLRVEKARRVFYRADCGILVTDSAPTPYED---DVVNLFKEMEIPF 143
Query: 154 TFVFTKCD 161
V K D
Sbjct: 144 VVVVNKID 151
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With
Gdp*alf4-, Mg2+ And K+
Length = 172
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQ--LINHFLVNKS-WYIVDLPG 94
I GR N GKSSL+NAL +E A+ + G T+ L H ++ +I+D G
Sbjct: 9 IAGRPNAGKSSLLNALA-GREAAIVTDIAGTTRDVLREHIHIDGXPLHIIDTAG 61
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
I+G N GKS++IN L + K + +PG T+ I F + I+D PG
Sbjct: 104 IVGVPNTGKSTIINKL-KGKRASSVGAQPGITKGIQWFSLENGVKILDTPG 153
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ 76
+ AI+GR NVGKSSL+NA + + A+ + PG T+
Sbjct: 226 KVAIVGRPNVGKSSLLNAW-SQSDRAIVTDLPGTTR 260
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 37/175 (21%)
Query: 43 AILGRSNVGKSSLINALVRKKEL-----ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGF 97
A+ G NVGK+SL NAL K+ +T +K + +N ++DLPG
Sbjct: 9 ALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTIN----LIDLPG--- 61
Query: 98 AKAPDVTRMDWSS----FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL 153
+ +SS + Y L ++ + V+L+ D+ P Q + L + L
Sbjct: 62 -----TYSLGYSSIDEKIARDYLLKGDADL-VILVADSVNPEQSLYLLLEILEXEKKVIL 115
Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH--PPWIMTSSVTGLGRDEL 206
DE K+ ++ R H P + TSSVTG G +EL
Sbjct: 116 AXTAI-------------DEAKKTGXKIDRYELQKHLGIPVVFTSSVTGEGLEEL 157
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQ--LINHFLVNKS-WYIVDLPGY 95
I GR N GKSSL+NAL +E A+ + G T+ L H ++ +I+D G
Sbjct: 9 IAGRPNAGKSSLLNALA-GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 62
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ--LINHFLVNKS-WYIVDLPGY 95
+ I GR N GKSSL+NAL +E A+ + G T+ L H ++ +I+D G
Sbjct: 9 KVVIAGRPNAGKSSLLNALA-GREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGL 65
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ-LINHFLVNKS--WYIVDLPGYGFA 98
I+G+ NVGKS+L+N L+ ++ A+ + PG T+ +I+ +V + + IVD G
Sbjct: 246 MVIVGKPNVGKSTLLNRLL-NEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 304
Query: 99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID 139
V R+ + E VL ++DAS P + D
Sbjct: 305 TNDLVERLGIERTLQEI----EKADIVLFVLDASSPLDEED 341
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 30.8 bits (68), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSW-----YIVDLPGYGFA 98
+LG+ VGKSS +N+L+ ++ + ++ P + + + +V+++ I+D PG A
Sbjct: 41 VLGKGGVGKSSTVNSLIGEQVVRVS---PFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97
Query: 99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLID 130
+ ++ KG+ +NR + VLL +D
Sbjct: 98 GYVNHQALE---LIKGFLVNRT--IDVLLYVD 124
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSW-----YIVDLPGYGFA 98
+LG+ VGKSS +N+L+ ++ + ++ P + + + +V+++ I+D PG A
Sbjct: 40 VLGKGGVGKSSTVNSLIGEQVVRVS---PFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 96
Query: 99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLID 130
+ ++ KG+ +NR + VLL +D
Sbjct: 97 GYVNHQALE---LIKGFLVNRT--IDVLLYVD 123
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSW-----YIVDLPGYGFA 98
+LG+ VGKSS +N+L+ ++ + ++ P + + + +V+++ I+D PG A
Sbjct: 41 VLGKGGVGKSSTVNSLIGEQVVRVS---PFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97
Query: 99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLID 130
+ ++ KG+ +NR + VLL +D
Sbjct: 98 GYVNHQALE---LIKGFLVNRT--IDVLLYVD 124
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 13/92 (14%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSW-----YIVDLPGYGFA 98
+LG+ VGKSS +N+L+ ++ + ++ P + + + +V+++ I+D PG A
Sbjct: 41 VLGKGGVGKSSTVNSLIGEQVVRVS---PFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97
Query: 99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLID 130
+ ++ KG+ +NR + VLL +D
Sbjct: 98 GYVNHQALE---LIKGFLVNRT--IDVLLYVD 124
>pdb|3MYR|B Chain B, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|D Chain D, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|F Chain F, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
pdb|3MYR|H Chain H, Crystal Structure Of [nife] Hydrogenase From
Allochromatium Vinosum In Its Ni-A State
Length = 561
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 15/130 (11%)
Query: 5 GSNIVVGPYA--------GHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSN---VGKS 53
G ++ VGP A GH Q +E+ V S+ D P D ++ LGR+ +
Sbjct: 383 GRSVEVGPLARVLMLYATGHDQAREL--VDSTLSRLDLPVD--ALYSTLGRTAARALESK 438
Query: 54 SLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113
L++A+ + + + K G T+ N L S + G G +AP W
Sbjct: 439 ILVDAMQGWYDGLIANVKSGDTKTFNETLWEPSSWPSRAQGVGIMEAPRGALGHWIVIED 498
Query: 114 GYFLNRESLV 123
G N +++V
Sbjct: 499 GRIANYQAVV 508
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQ--LINHFLVNKSWY-IVDLPG 94
I G+ N GKS+L+N L+ +E A+ S PG T+ + F+ +K+ + + D G
Sbjct: 238 IAGKPNAGKSTLLNTLL-GQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAG 290
>pdb|2YKR|W Chain W, 30s Ribosomal Subunit With Rsga Bound In The Presence Of
Gmppnp
Length = 350
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 46 GRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWY-------IVDLPG 94
G+S VGKSSL+NAL+ ++ LT+ + L H Y ++D PG
Sbjct: 214 GQSGVGKSSLLNALLGLQKEILTNDVSDNSGLGQHTTTAARLYHFPHGGDVIDSPG 269
>pdb|2DST|A Chain A, Crystal Structure Analysis Of Tt1977
pdb|2DST|B Chain B, Crystal Structure Analysis Of Tt1977
Length = 131
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115
++Y++DLPGYG + P + + + F G+
Sbjct: 44 AFYLLDLPGYGRTEGPRMAPEELAHFVAGF 73
>pdb|1U0L|A Chain A, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|B Chain B, Crystal Structure Of Yjeq From Thermotoga Maritima
pdb|1U0L|C Chain C, Crystal Structure Of Yjeq From Thermotoga Maritima
Length = 301
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 43 AILGRSNVGKSSLINAL-----VRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYG 96
+ G S VGKSSL+NA+ +R E++ ++ T L + Y+VD PG+
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232
Query: 97 FAKAPDVTRMDWSSFTKGY 115
+ D+ + + K +
Sbjct: 233 NLEINDIEPEELKHYFKEF 251
>pdb|2Z67|A Chain A, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|B Chain B, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|C Chain C, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
pdb|2Z67|D Chain D, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec)
Selenium Transferase (sepsecs)
Length = 456
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 5 GSNIVVGPYAGH-SQIKEVEFVKSSGR 30
GSN+V+ PYA H S IK V FV + R
Sbjct: 175 GSNVVIYPYASHKSPIKAVSFVGXNXR 201
>pdb|3B0X|A Chain A, K263a Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
++VA G P+E +K ++ R N H PP+++ +
Sbjct: 378 VRVAGGPSPEEALKRVGEIRRFNETHGPPYLLAGA 412
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 44 ILGRSNVGKSSLINALVRKKELA 66
I+G NVGKS+L NAL R LA
Sbjct: 6 IVGLPNVGKSTLFNALTRANALA 28
>pdb|3AU2|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Complexed
With Ca-Dgtp
pdb|3AU6|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With PrimerTEMPLATE DNA AND DDGTP
pdb|3AUO|A Chain A, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
pdb|3AUO|B Chain B, Dna Polymerase X From Thermus Thermophilus Hb8 Ternary
Complex With 1- Nt Gapped Dna And Ddgtp
Length = 575
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
++VA G P+E +K ++ R N H PP+++ +
Sbjct: 378 VRVAGGPSPEEALKRVGEIRRFNETHGPPYLLAGA 412
>pdb|3B0Y|A Chain A, K263d Mutant Of Polx From Thermus Thermophilus Hb8
Complexed With Ca- Dgtp
Length = 575
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
++VA G P+E +K ++ R N H PP+++ +
Sbjct: 378 VRVAGGPSPEEALKRVGEIRRFNETHGPPYLLAGA 412
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 46 GRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWY-------IVDLPG 94
G+S VGKSSL+NAL+ + LT+ + L H Y ++D PG
Sbjct: 222 GQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPG 277
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 44 ILGRSNVGKSSLINALVRKKELA 66
I+G NVGKS+L NAL R LA
Sbjct: 6 IVGLPNVGKSTLFNALTRANALA 28
>pdb|2QTF|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus
pdb|2QTH|A Chain A, Crystal Structure Of A Gtp-Binding Protein From The
Hyperthermophilic Archaeon Sulfolobus Solfataricus In
Complex With Gdp
pdb|3KXI|A Chain A, Crystal Structure Of Ssgbp And Gdp Complex
Length = 364
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 71/158 (44%), Gaps = 22/158 (13%)
Query: 19 IKEVEFVK--SSGRAKDCPKDDRPEFAILGRSNVGKSSLINA---LVRKKELAL-TSKKP 72
+KE+E +K + +++ P I+G +N GK+SL N+ L +K + L T+ P
Sbjct: 157 MKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSP 216
Query: 73 GKTQL-INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDA 131
+ + IN N+ +VD G+ P + + + ++ + + ++L+ID+
Sbjct: 217 KRYAIPIN----NRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSD-----ALILVIDS 267
Query: 132 S------VPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
+ + + + +G + P+ K DK+
Sbjct: 268 TFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 42 FAILGRSNVGKSSLINALVR-----KKELALTS--KKPGKTQLINHFLVNKSWYIVDLPG 94
F I S GK+SL+ ALV+ K ++ T+ K+PG + +++F ++++ + +
Sbjct: 10 FIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAXVKE 69
Query: 95 YGFAKAPDV------TRMDW 108
F + + T DW
Sbjct: 70 GAFLEHATIYERHYGTEKDW 89
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 42 FAILGRSNVGKSSLINALV------------RKKELALTSKKPGKTQLINHFLVNKSWYI 89
++G S +GKS+LIN+L +++ T + T I V +
Sbjct: 40 LMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 90 VDLPGYGFA 98
VD PGYG A
Sbjct: 100 VDTPGYGDA 108
>pdb|3FTQ|A Chain A, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|B Chain B, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|C Chain C, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
pdb|3FTQ|D Chain D, Crystal Structure Of Septin 2 In Complex With Gppnhp And
Mg2+
Length = 274
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 44 ILGRSNVGKSSLINALV------------RKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
++G S +GKS+LIN+L +++ T + T I V +VD
Sbjct: 10 VVGESGLGKSTLINSLFLTDLYPERIIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 69
Query: 92 LPGYGFA 98
PGYG A
Sbjct: 70 TPGYGDA 76
>pdb|3EC1|A Chain A, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
pdb|3EC1|B Chain B, Structure Of Yqeh Gtpase From Geobacillus
Stearothermophilus (An Atnos1 ATNOA1 ORTHOLOG)
Length = 369
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 44 ILGRSNVGKSSLINALVR----KKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
++G +NVGKS+ IN ++ K + TS PG T + + + D PG
Sbjct: 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPG 221
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 42 FAILGRSNVGKSSLINALV------------RKKELALTSKKPGKTQLINHFLVNKSWYI 89
++G S +GKS+LIN+L +++ T + T I V +
Sbjct: 40 LXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTV 99
Query: 90 VDLPGYGFA 98
VD PGYG A
Sbjct: 100 VDTPGYGDA 108
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 12/69 (17%)
Query: 42 FAILGRSNVGKSSLINALV------------RKKELALTSKKPGKTQLINHFLVNKSWYI 89
++G S +GKS+LIN+L +++ T + T I V +
Sbjct: 21 LXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTV 80
Query: 90 VDLPGYGFA 98
VD PGYG A
Sbjct: 81 VDTPGYGDA 89
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 27 SSGRAKDCPKDDRPEF-----AILGRSNVGKSSLINAL-----VRKKELALTSKKPGKTQ 76
+S + +D D P F G+S VGKSSL+NA+ +R E++ + T
Sbjct: 156 TSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTT 215
Query: 77 LINHFLVNKSWYIVDLPGYGFAKAPDV 103
+ + D PG+ + D+
Sbjct: 216 RHVELIHTSGGLVADTPGFSSLEFTDI 242
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 35/182 (19%)
Query: 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKT--QLINHFLVN-KSWYIVDLPG--- 94
E A++G NVGKS++ NAL E PG T + F N + + +VDLPG
Sbjct: 9 EIALIGNPNVGKSTIFNALTG--ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYS 66
Query: 95 -------------YGFAKAPD--VTRMDWSSFTKGYFLNRESL-VGVLLLID------AS 132
Y + PD V +D ++ + +L + + +G LL+ A
Sbjct: 67 LTANSIDEIIARDYIINEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAK 126
Query: 133 VPPQKIDLD-CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191
+ID+D LG +PL + KM + + ++ ++ YP+ P
Sbjct: 127 SLGIEIDVDKLEKILGVKVVPL----SAAKKMGIEELKKAISIAVKDKKTAEIKYPNFEP 182
Query: 192 WI 193
+I
Sbjct: 183 YI 184
>pdb|1HSE|A Chain A, H253m N Terminal Lobe Of Human Lactoferrin
Length = 334
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSMAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 331
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 286 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 336
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 246 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 296
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 262 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 312
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 246 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 296
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 260 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 310
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 260 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 310
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 260 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 310
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 252 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 302
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 245 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 295
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 246 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 296
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 272 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 322
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 245 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 295
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 263 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 313
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 12 PYAGHSQIKEVEFVKSSGRA---KDCP--------------KDDRPEFAIL 45
PY S + +EFV S GR K+CP +DRP FAI+
Sbjct: 237 PYPSKSNQEVLEFVTSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAII 287
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKT--QLINHFLVN-KSWYIVDLPG 94
E A++G NVGKS++ NAL E PG T + F N + + +VDLPG
Sbjct: 6 EIALIGNPNVGKSTIFNALTG--ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 60
>pdb|1L5T|A Chain A, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form.
pdb|1L5T|B Chain B, Crystal Structure Of A Domain-Opened Mutant (R121d) Of The
Human Lactoferrin N-Lobe Refined From A Merohedrally-
Twinned Crystal Form
Length = 332
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 331
>pdb|1H45|A Chain A, R210g N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 244 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 303
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 304 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 332
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKT--QLINHFLVN-KSWYIVDLPG 94
E A++G NVGKS++ NAL E PG T + F N + + +VDLPG
Sbjct: 5 EIALIGNPNVGKSTIFNALTG--ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|1VFE|A Chain A, Human Lactoferrin, N-terminal Lobe Mutant With Arg 121
Replaced By Ser (r121s)
Length = 333
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 331
>pdb|1H44|A Chain A, R210l N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 244 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 303
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 304 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 332
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKT--QLINHFLVN-KSWYIVDLPG 94
E A++G NVGKS++ NAL E PG T + F N + + +VDLPG
Sbjct: 5 EIALIGNPNVGKSTIFNALTG--ENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPG 59
>pdb|1H43|A Chain A, R210e N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 244 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 303
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 304 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 332
>pdb|1EH3|A Chain A, R210k N-Terminal Lobe Human Lactoferrin
Length = 334
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 244 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 303
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 304 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 332
>pdb|2PMS|A Chain A, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
pdb|2PMS|B Chain B, Crystal Structure Of The Complex Of Human Lactoferrin
N-Lobe And Lactoferrin-Binding Domain Of Pneumococcal
Surface Protein A
Length = 344
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 244 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 303
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 304 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 332
>pdb|1DSN|A Chain A, D60s N-Terminal Lobe Human Lactoferrin
Length = 333
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 331
>pdb|1LCT|A Chain A, Structure Of The Recombinant N-Terminal Lobe Of Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 333
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 331
>pdb|2BJJ|X Chain X, Structure Of Recombinant Human Lactoferrin Produced In The
Milk Of Transgenic Cows
Length = 692
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 244 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 303
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 304 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 332
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 44 ILGRSNVGKSSLINALVRK-----KELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
++G +NVGKS+ IN +++ + + TS PG T + +++ + D PG
Sbjct: 165 VVGCTNVGKSTFINRXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPG 220
>pdb|1CB6|A Chain A, Structure Of Human Apolactoferrin At 2.0 A Resolution.
pdb|1BKA|A Chain A, Oxalate-Substituted Diferric Lactoferrin
Length = 691
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 331
>pdb|1B0L|A Chain A, Recombinant Human Diferric Lactoferrin
Length = 691
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 331
>pdb|1LFI|A Chain A, Metal Substitution In Transferrins: The Crystal Structure
Of Human Copper-lactoferrin At 2.1 Angstroms Resolution
Length = 691
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 331
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 44 ILGRSNVGKSSLINALVRKK 63
ILG S VGK+SL+N V KK
Sbjct: 13 ILGDSGVGKTSLMNQYVNKK 32
>pdb|1N76|A Chain A, Crystal Structure Of Human Seminal Lactoferrin At 3.4 A
Resolution
Length = 690
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 242 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 301
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 302 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 330
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 44 ILGRSNVGKSSLINALVRKK 63
ILG S VGK+SL+N V KK
Sbjct: 13 ILGDSGVGKTSLMNQYVNKK 32
>pdb|1FCK|A Chain A, Structure Of Diceric Human Lactoferrin
Length = 692
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 244 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 303
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 304 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 332
>pdb|1LFH|A Chain A, Molecular Replacement Solution Of The Structure Of
Apolactoferrin, A Protein Displaying Large-Scale
Conformational Change
Length = 691
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 331
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 44 ILGRSNVGKSSLINALVRKK 63
ILG S VGK+SL+N V KK
Sbjct: 13 ILGDSGVGKTSLMNQYVNKK 32
>pdb|1LCF|A Chain A, Crystal Structure Of Copper-And Oxalate-Substituted Human
Lactoferrin At 2.0 Angstroms Resolution
Length = 691
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 331
>pdb|1LFG|A Chain A, Structure Of Diferric Human Lactoferrin
Length = 691
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYFLNRESL 122
GF++ P R+D + GYF ++L
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYFTAIQNL 331
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 44 ILGRSNVGKSSLINALVRKK 63
ILG S VGK+SL+N V KK
Sbjct: 13 ILGDSGVGKTSLMNQYVNKK 32
>pdb|2AKA|B Chain B, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase
Domain Of Dynamin 1 From Rattus Norvegicus
Length = 299
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 38 DRPEFAILGRSNVGKSSLINALVRKKEL----ALTSKKPGKTQLIN 79
D P+ A++G + GKSS++ V + L + +++P QL+N
Sbjct: 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 70
>pdb|3ZYC|A Chain A, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYC|D Chain D, Dynamin 1 Gtpase Ged Fusion Dimer Complexed With Gmppcp
pdb|3ZYS|A Chain A, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|D Chain D, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 353
Score = 27.3 bits (59), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 38 DRPEFAILGRSNVGKSSLINALVRKKEL----ALTSKKPGKTQLIN 79
D P+ A++G + GKSS++ V + L + +++P QL+N
Sbjct: 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
>pdb|1JW1|A Chain A, Crystallization And Structure Determination Of Goat
Lactoferrin At 4.0 Resolution: A New Form Of Packing In
Lactoferrins With A High Solvent Content In Crystals
Length = 689
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78
K+C P A++ RS GK +LI L+RK + K + QL
Sbjct: 243 KECHLAQVPSHAVVARSVDGKENLIWELLRKAQEKFGKNKSQRFQLF 289
>pdb|1VFD|A Chain A, Human Lactoferrin, N-Terminal Lobe Mutant With Arg 121
Replaced By Glu (R121e)
Length = 330
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
KDC P A++ RS GK I L+R+ + K K QL K D
Sbjct: 243 KDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKD 302
Query: 92 LPGYGFAKAPDVTRMDWSSF-TKGYF 116
GF++ P R+D + GYF
Sbjct: 303 -SAIGFSRVP--PRIDSGLYLGSGYF 325
>pdb|3SOP|A Chain A, Crystal Structure Of Human Septin 3 Gtpase Domain
pdb|3SOP|B Chain B, Crystal Structure Of Human Septin 3 Gtpase Domain
Length = 270
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Query: 44 ILGRSNVGKSSLINALV------------RKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
++G+S +GKS+L+N L R++++ T + +I V ++D
Sbjct: 7 VVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVID 66
Query: 92 LPGYG 96
PG+G
Sbjct: 67 TPGFG 71
>pdb|2X2E|A Chain A, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2E|D Chain D, Dynamin Gtpase Dimer, Long Axis Form
pdb|2X2F|A Chain A, Dynamin 1 Gtpase Dimer, Short Axis Form
pdb|2X2F|D Chain D, Dynamin 1 Gtpase Dimer, Short Axis Form
Length = 353
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 38 DRPEFAILGRSNVGKSSLINALVRKKEL----ALTSKKPGKTQLIN 79
D P+ A++G + GKSS++ V + L + +++P QL+N
Sbjct: 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 75
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 38 DRPEFAILGRSNVGKSSLINALVRKKEL----ALTSKKPGKTQLIN 79
D P+ A++G + GKSS++ V + L + +++P QL+N
Sbjct: 27 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 72
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 38 DRPEFAILGRSNVGKSSLINALVRKKEL----ALTSKKPGKTQLIN 79
D P+ A++G + GKSS++ V + L + +++P QL+N
Sbjct: 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,873,779
Number of Sequences: 62578
Number of extensions: 266154
Number of successful extensions: 746
Number of sequences better than 100.0: 107
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 114
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)