Query 027757
Match_columns 219
No_of_seqs 116 out of 1648
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 14:43:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0218 Predicted GTPase [Gene 100.0 2.4E-29 5.3E-34 183.0 20.8 194 20-216 5-198 (200)
2 TIGR03598 GTPase_YsxC ribosome 100.0 4.6E-28 1E-32 179.6 16.8 179 22-204 1-179 (179)
3 PRK00454 engB GTP-binding prot 100.0 3E-27 6.5E-32 177.6 18.4 191 20-216 5-195 (196)
4 KOG0084 GTPase Rab1/YPT1, smal 99.9 2.5E-26 5.4E-31 165.1 14.5 159 37-217 7-174 (205)
5 cd04120 Rab12 Rab12 subfamily. 99.9 7.2E-25 1.6E-29 164.8 17.8 156 40-215 1-163 (202)
6 KOG0092 GTPase Rab5/YPT51 and 99.9 8.6E-26 1.9E-30 161.7 11.3 154 38-214 4-166 (200)
7 cd04121 Rab40 Rab40 subfamily. 99.9 1.3E-24 2.8E-29 161.9 18.1 155 38-215 5-167 (189)
8 PF02421 FeoB_N: Ferrous iron 99.9 1.7E-25 3.8E-30 159.6 12.2 153 40-210 1-156 (156)
9 COG1159 Era GTPase [General fu 99.9 1.3E-24 2.8E-29 166.7 16.8 162 40-214 7-171 (298)
10 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 2.5E-24 5.4E-29 158.5 17.7 156 39-216 2-165 (172)
11 cd04122 Rab14 Rab14 subfamily. 99.9 4E-24 8.6E-29 156.5 17.8 153 39-214 2-163 (166)
12 cd01867 Rab8_Rab10_Rab13_like 99.9 6.1E-24 1.3E-28 155.7 18.2 154 39-215 3-165 (167)
13 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 4E-24 8.8E-29 161.3 17.4 157 40-216 1-169 (201)
14 cd04127 Rab27A Rab27a subfamil 99.9 5.6E-24 1.2E-28 157.7 17.7 155 38-215 3-177 (180)
15 cd01864 Rab19 Rab19 subfamily. 99.9 5.6E-24 1.2E-28 155.6 17.3 155 39-213 3-164 (165)
16 cd01865 Rab3 Rab3 subfamily. 99.9 6.6E-24 1.4E-28 155.2 17.5 153 40-215 2-163 (165)
17 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 3.1E-24 6.7E-29 159.1 15.9 157 37-213 3-178 (182)
18 KOG0394 Ras-related GTPase [Ge 99.9 8E-25 1.7E-29 155.4 12.0 164 37-215 7-178 (210)
19 cd01875 RhoG RhoG subfamily. 99.9 3E-24 6.5E-29 160.7 15.5 157 39-215 3-177 (191)
20 KOG0078 GTP-binding protein SE 99.9 4.8E-24 1E-28 155.4 15.9 162 35-216 8-175 (207)
21 cd01876 YihA_EngB The YihA (En 99.9 5.7E-24 1.2E-28 155.4 16.5 169 41-213 1-169 (170)
22 cd04175 Rap1 Rap1 subgroup. T 99.9 5.1E-24 1.1E-28 155.6 16.2 155 39-215 1-163 (164)
23 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 9.5E-24 2.1E-28 154.4 17.4 154 39-215 2-164 (166)
24 TIGR00436 era GTP-binding prot 99.9 1.2E-23 2.7E-28 165.3 19.0 160 41-215 2-164 (270)
25 cd04119 RJL RJL (RabJ-Like) su 99.9 1.2E-23 2.7E-28 153.7 17.6 152 40-214 1-166 (168)
26 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.2E-23 2.7E-28 154.5 17.5 155 41-216 2-166 (170)
27 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.1E-23 2.4E-28 153.1 16.7 152 40-214 2-161 (162)
28 cd04133 Rop_like Rop subfamily 99.9 4.3E-24 9.4E-29 157.4 14.4 155 40-214 2-172 (176)
29 smart00173 RAS Ras subfamily o 99.9 1E-23 2.3E-28 153.8 16.2 155 40-216 1-163 (164)
30 cd01874 Cdc42 Cdc42 subfamily. 99.9 5.8E-24 1.3E-28 157.0 14.9 156 40-214 2-174 (175)
31 cd04140 ARHI_like ARHI subfami 99.9 9.6E-24 2.1E-28 154.4 15.8 153 40-214 2-164 (165)
32 cd04106 Rab23_lke Rab23-like s 99.9 1.2E-23 2.6E-28 153.2 16.1 150 40-212 1-160 (162)
33 cd04117 Rab15 Rab15 subfamily. 99.9 1.8E-23 3.8E-28 152.4 16.8 151 40-213 1-160 (161)
34 cd04131 Rnd Rnd subfamily. Th 99.9 9.5E-24 2.1E-28 156.1 15.5 155 39-213 1-174 (178)
35 cd04136 Rap_like Rap-like subf 99.9 9.7E-24 2.1E-28 153.8 15.2 153 40-214 2-162 (163)
36 PRK04213 GTP-binding protein; 99.9 4.4E-23 9.5E-28 155.6 19.3 171 37-216 7-193 (201)
37 cd04144 Ras2 Ras2 subfamily. 99.9 1.4E-23 3E-28 157.0 16.4 155 41-217 1-165 (190)
38 PLN03071 GTP-binding nuclear p 99.9 1.5E-23 3.2E-28 160.0 16.7 155 36-215 10-172 (219)
39 cd04145 M_R_Ras_like M-Ras/R-R 99.9 2.4E-23 5.2E-28 151.8 17.0 154 39-214 2-163 (164)
40 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 2.1E-23 4.6E-28 159.5 17.1 159 38-215 12-188 (232)
41 cd04110 Rab35 Rab35 subfamily. 99.9 2.7E-23 5.9E-28 156.5 17.5 155 38-215 5-167 (199)
42 cd04113 Rab4 Rab4 subfamily. 99.9 2.7E-23 5.9E-28 151.3 16.9 153 40-213 1-160 (161)
43 cd01868 Rab11_like Rab11-like. 99.9 4.1E-23 8.8E-28 150.9 17.8 153 39-214 3-164 (165)
44 PTZ00369 Ras-like protein; Pro 99.9 2.2E-23 4.9E-28 155.7 16.6 157 38-216 4-168 (189)
45 cd04142 RRP22 RRP22 subfamily. 99.9 3.6E-23 7.9E-28 155.5 17.7 164 40-215 1-174 (198)
46 KOG0098 GTPase Rab2, small G p 99.9 1E-23 2.2E-28 150.2 13.4 156 37-215 4-168 (216)
47 cd04109 Rab28 Rab28 subfamily. 99.9 3.5E-23 7.5E-28 157.7 17.4 155 40-215 1-166 (215)
48 cd04124 RabL2 RabL2 subfamily. 99.9 3.2E-23 6.9E-28 151.0 16.4 154 40-217 1-160 (161)
49 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.7E-23 1.4E-27 150.1 18.1 157 40-216 1-167 (168)
50 cd01866 Rab2 Rab2 subfamily. 99.9 6.6E-23 1.4E-27 150.4 18.0 155 38-215 3-166 (168)
51 cd04128 Spg1 Spg1p. Spg1p (se 99.9 3.4E-23 7.4E-28 153.7 16.5 157 40-215 1-166 (182)
52 PRK12297 obgE GTPase CgtA; Rev 99.9 9.1E-23 2E-27 167.7 20.5 192 4-216 110-328 (424)
53 cd04112 Rab26 Rab26 subfamily. 99.9 5.7E-23 1.2E-27 153.8 17.7 156 40-216 1-164 (191)
54 cd01871 Rac1_like Rac1-like su 99.9 2.1E-23 4.7E-28 153.8 15.0 155 40-213 2-173 (174)
55 cd04125 RabA_like RabA-like su 99.9 6.8E-23 1.5E-27 153.0 17.6 154 40-216 1-163 (188)
56 cd04116 Rab9 Rab9 subfamily. 99.9 5.4E-23 1.2E-27 151.0 16.6 154 37-213 3-169 (170)
57 PLN03110 Rab GTPase; Provision 99.9 1.1E-22 2.4E-27 155.0 18.7 156 38-216 11-175 (216)
58 COG1160 Predicted GTPases [Gen 99.9 2.7E-23 5.8E-28 167.8 15.6 158 40-214 4-164 (444)
59 PRK03003 GTP-binding protein D 99.9 2E-23 4.4E-28 175.8 15.5 169 38-217 210-384 (472)
60 cd04111 Rab39 Rab39 subfamily. 99.9 9.4E-23 2E-27 154.8 17.6 154 39-215 2-166 (211)
61 smart00175 RAB Rab subfamily o 99.9 1.3E-22 2.7E-27 148.0 17.6 153 40-215 1-162 (164)
62 cd00877 Ran Ran (Ras-related n 99.9 5.5E-23 1.2E-27 150.5 15.6 151 40-215 1-159 (166)
63 cd01862 Rab7 Rab7 subfamily. 99.9 1.2E-22 2.7E-27 149.2 17.6 157 40-216 1-168 (172)
64 cd04149 Arf6 Arf6 subfamily. 99.9 7.9E-23 1.7E-27 149.9 16.3 156 37-212 7-167 (168)
65 cd04134 Rho3 Rho3 subfamily. 99.9 2E-23 4.4E-28 156.0 13.3 157 40-215 1-174 (189)
66 KOG2486 Predicted GTPase [Gene 99.9 1.9E-23 4.1E-28 157.9 13.0 218 1-218 96-319 (320)
67 cd04118 Rab24 Rab24 subfamily. 99.9 1.1E-22 2.4E-27 152.4 17.3 158 40-216 1-167 (193)
68 cd04176 Rap2 Rap2 subgroup. T 99.9 5.8E-23 1.3E-27 149.8 15.3 154 39-214 1-162 (163)
69 cd04126 Rab20 Rab20 subfamily. 99.9 1.1E-22 2.3E-27 154.7 17.1 161 40-215 1-190 (220)
70 COG1160 Predicted GTPases [Gen 99.9 1.5E-23 3.2E-28 169.2 13.0 172 38-217 177-353 (444)
71 cd04132 Rho4_like Rho4-like su 99.9 9E-23 2E-27 152.2 16.4 157 40-216 1-168 (187)
72 cd01860 Rab5_related Rab5-rela 99.9 1.9E-22 4.2E-27 146.9 17.8 155 39-214 1-162 (163)
73 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 5.2E-23 1.1E-27 147.7 14.1 153 39-214 22-184 (221)
74 PRK12298 obgE GTPase CgtA; Rev 99.9 1.7E-22 3.7E-27 165.2 19.1 191 11-216 117-334 (390)
75 cd01897 NOG NOG1 is a nucleola 99.9 2.3E-22 4.9E-27 147.3 18.0 159 40-214 1-167 (168)
76 TIGR03594 GTPase_EngA ribosome 99.9 2E-22 4.2E-27 168.6 20.0 171 37-217 170-346 (429)
77 cd01861 Rab6 Rab6 subfamily. 99.9 1.7E-22 3.6E-27 147.0 17.1 153 40-213 1-160 (161)
78 cd04154 Arl2 Arl2 subfamily. 99.9 6.1E-23 1.3E-27 151.3 14.8 157 36-212 11-172 (173)
79 PRK00093 GTP-binding protein D 99.9 7.8E-23 1.7E-27 171.2 17.1 169 38-217 172-346 (435)
80 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.2E-22 4.9E-27 147.8 17.5 154 39-215 2-169 (170)
81 PRK12299 obgE GTPase CgtA; Rev 99.9 2.2E-22 4.8E-27 161.6 18.9 191 10-216 115-329 (335)
82 cd01863 Rab18 Rab18 subfamily. 99.9 1.8E-22 3.8E-27 146.9 16.8 152 40-213 1-160 (161)
83 PRK00089 era GTPase Era; Revie 99.9 2.3E-22 5E-27 160.0 18.9 162 40-214 6-170 (292)
84 PTZ00133 ADP-ribosylation fact 99.9 1.8E-22 4E-27 149.9 16.7 160 37-219 15-182 (182)
85 PLN03118 Rab family protein; P 99.9 3.3E-22 7.1E-27 152.0 18.4 157 37-215 12-177 (211)
86 cd04101 RabL4 RabL4 (Rab-like4 99.9 2.9E-22 6.3E-27 146.2 17.4 152 40-214 1-163 (164)
87 PLN03108 Rab family protein; P 99.9 3.9E-22 8.4E-27 151.4 18.6 156 38-216 5-169 (210)
88 cd04157 Arl6 Arl6 subfamily. 99.9 6.5E-23 1.4E-27 149.2 13.9 151 41-212 1-161 (162)
89 PLN00223 ADP-ribosylation fact 99.9 2.5E-22 5.4E-27 149.0 17.0 157 37-216 15-179 (181)
90 PRK15494 era GTPase Era; Provi 99.9 2E-22 4.2E-27 162.8 17.4 162 38-214 51-215 (339)
91 cd04123 Rab21 Rab21 subfamily. 99.9 4.3E-22 9.4E-27 144.7 17.6 154 40-214 1-161 (162)
92 cd01892 Miro2 Miro2 subfamily. 99.9 1E-22 2.2E-27 149.5 14.3 158 38-215 3-166 (169)
93 cd04163 Era Era subfamily. Er 99.9 7.9E-22 1.7E-26 143.6 18.7 162 39-213 3-167 (168)
94 cd01894 EngA1 EngA1 subfamily. 99.9 2.5E-22 5.5E-27 145.2 15.9 153 43-213 1-156 (157)
95 cd01895 EngA2 EngA2 subfamily. 99.9 8.1E-22 1.8E-26 144.7 18.9 166 39-213 2-173 (174)
96 smart00177 ARF ARF-like small 99.9 2.9E-22 6.3E-27 147.9 16.1 156 37-215 11-174 (175)
97 smart00174 RHO Rho (Ras homolo 99.9 8.7E-23 1.9E-27 150.4 13.2 154 42-214 1-171 (174)
98 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.8E-22 6.1E-27 152.6 16.3 156 39-214 1-175 (222)
99 cd04150 Arf1_5_like Arf1-Arf5- 99.9 3.2E-22 7E-27 145.5 15.7 151 40-212 1-158 (159)
100 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 3.3E-22 7.2E-27 148.7 16.0 158 39-215 3-170 (183)
101 cd04177 RSR1 RSR1 subgroup. R 99.9 3.8E-22 8.3E-27 146.3 15.9 154 40-214 2-163 (168)
102 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.6E-22 3.5E-27 149.0 13.8 153 40-211 1-170 (173)
103 cd01889 SelB_euk SelB subfamil 99.9 3E-22 6.6E-27 150.0 14.9 158 40-213 1-184 (192)
104 cd04158 ARD1 ARD1 subfamily. 99.9 3.2E-22 7E-27 146.9 14.7 154 41-214 1-160 (169)
105 PF00071 Ras: Ras family; Int 99.9 6.8E-22 1.5E-26 144.0 16.2 152 41-215 1-161 (162)
106 cd04139 RalA_RalB RalA/RalB su 99.9 1.1E-21 2.5E-26 142.8 17.0 154 40-215 1-162 (164)
107 TIGR02729 Obg_CgtA Obg family 99.9 1.9E-21 4.1E-26 156.1 19.7 188 10-214 114-328 (329)
108 cd04114 Rab30 Rab30 subfamily. 99.9 1.3E-21 2.9E-26 143.4 17.3 155 38-213 6-167 (169)
109 cd04135 Tc10 TC10 subfamily. 99.9 2.8E-22 6.1E-27 147.7 13.8 156 40-214 1-173 (174)
110 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1.6E-21 3.5E-26 140.9 17.5 152 40-214 2-156 (157)
111 cd04156 ARLTS1 ARLTS1 subfamil 99.9 3.3E-22 7.1E-27 145.4 13.8 151 41-212 1-159 (160)
112 KOG0093 GTPase Rab3, small G p 99.9 3.9E-22 8.4E-27 136.7 13.1 155 39-216 21-184 (193)
113 cd01898 Obg Obg subfamily. Th 99.9 3.4E-22 7.5E-27 146.6 13.9 157 41-213 2-169 (170)
114 cd04143 Rhes_like Rhes_like su 99.9 5.6E-22 1.2E-26 153.5 15.7 155 40-215 1-171 (247)
115 cd04171 SelB SelB subfamily. 99.9 1.5E-21 3.2E-26 142.2 17.0 155 41-212 2-163 (164)
116 KOG0080 GTPase Rab18, small G 99.9 1.7E-22 3.7E-27 140.5 11.2 153 38-213 10-172 (209)
117 cd01870 RhoA_like RhoA-like su 99.9 4.6E-22 9.9E-27 146.7 14.3 157 39-214 1-174 (175)
118 cd04103 Centaurin_gamma Centau 99.9 8.1E-22 1.8E-26 143.1 15.0 149 40-213 1-157 (158)
119 cd01893 Miro1 Miro1 subfamily. 99.9 8.2E-22 1.8E-26 144.3 15.1 158 40-214 1-163 (166)
120 PRK03003 GTP-binding protein D 99.9 1.2E-21 2.5E-26 165.2 18.0 160 38-215 37-199 (472)
121 cd04148 RGK RGK subfamily. Th 99.9 1.4E-21 3.1E-26 149.3 16.6 153 40-215 1-163 (221)
122 cd04147 Ras_dva Ras-dva subfam 99.9 9E-22 1.9E-26 148.1 15.3 155 41-215 1-163 (198)
123 cd01890 LepA LepA subfamily. 99.9 1.6E-21 3.4E-26 144.4 16.1 154 41-214 2-176 (179)
124 cd00154 Rab Rab family. Rab G 99.9 1.5E-21 3.2E-26 141.0 15.6 151 40-211 1-158 (159)
125 PRK09518 bifunctional cytidyla 99.9 2.7E-21 5.8E-26 170.0 19.9 170 37-217 448-623 (712)
126 cd00878 Arf_Arl Arf (ADP-ribos 99.9 9.8E-22 2.1E-26 142.6 14.4 150 41-212 1-157 (158)
127 COG0486 ThdF Predicted GTPase 99.9 1.3E-21 2.8E-26 158.5 16.3 159 39-217 217-378 (454)
128 TIGR02528 EutP ethanolamine ut 99.9 1.3E-21 2.8E-26 139.5 14.7 140 41-211 2-141 (142)
129 smart00176 RAN Ran (Ras-relate 99.9 1.6E-21 3.5E-26 146.4 15.7 147 45-216 1-155 (200)
130 smart00178 SAR Sar1p-like memb 99.9 1.6E-21 3.5E-26 145.1 15.6 154 37-213 15-183 (184)
131 cd01878 HflX HflX subfamily. 99.9 3.5E-21 7.7E-26 145.5 17.6 157 37-213 39-203 (204)
132 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 1.5E-21 3.2E-26 144.0 15.2 152 38-212 14-173 (174)
133 cd04146 RERG_RasL11_like RERG/ 99.9 7.2E-22 1.6E-26 144.4 13.3 153 41-214 1-163 (165)
134 KOG0079 GTP-binding protein H- 99.9 3.3E-22 7.1E-27 137.2 10.4 155 39-215 8-169 (198)
135 cd04137 RheB Rheb (Ras Homolog 99.9 3.3E-21 7E-26 142.9 16.7 157 40-217 2-165 (180)
136 PF00009 GTP_EFTU: Elongation 99.9 5.3E-22 1.2E-26 148.2 12.5 159 39-214 3-186 (188)
137 cd00157 Rho Rho (Ras homology) 99.9 8.1E-22 1.8E-26 144.7 13.2 155 40-212 1-170 (171)
138 cd04151 Arl1 Arl1 subfamily. 99.9 2E-21 4.3E-26 141.1 15.1 149 41-212 1-157 (158)
139 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.1E-21 2.3E-26 143.6 13.6 154 41-212 1-166 (167)
140 cd00879 Sar1 Sar1 subfamily. 99.9 2E-21 4.3E-26 145.3 15.1 156 38-213 18-189 (190)
141 cd00881 GTP_translation_factor 99.9 5.4E-21 1.2E-25 142.4 16.7 158 41-214 1-186 (189)
142 cd00876 Ras Ras family. The R 99.9 4.6E-21 1E-25 139.0 15.8 151 41-213 1-159 (160)
143 cd01879 FeoB Ferrous iron tran 99.9 6E-21 1.3E-25 138.2 16.4 154 44-215 1-157 (158)
144 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.7E-21 3.8E-26 142.7 13.4 153 41-212 1-166 (167)
145 PRK12296 obgE GTPase CgtA; Rev 99.9 1.2E-20 2.6E-25 157.1 19.4 189 12-217 118-342 (500)
146 cd01873 RhoBTB RhoBTB subfamil 99.9 3.2E-21 6.9E-26 144.5 14.4 154 39-213 2-194 (195)
147 KOG0091 GTPase Rab39, small G 99.9 9.7E-22 2.1E-26 137.1 10.6 156 38-216 7-174 (213)
148 TIGR03156 GTP_HflX GTP-binding 99.9 1.2E-20 2.7E-25 152.6 18.7 156 37-213 187-350 (351)
149 KOG0095 GTPase Rab30, small G 99.9 3.6E-21 7.9E-26 132.4 13.0 152 38-212 6-166 (213)
150 TIGR03594 GTPase_EngA ribosome 99.9 4.4E-21 9.4E-26 160.5 16.0 156 41-214 1-159 (429)
151 KOG0087 GTPase Rab11/YPT3, sma 99.9 1.7E-21 3.7E-26 141.6 11.5 157 37-213 12-174 (222)
152 cd04155 Arl3 Arl3 subfamily. 99.9 1E-20 2.2E-25 139.3 15.5 154 37-212 12-172 (173)
153 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 4.8E-21 1E-25 139.9 13.2 152 41-212 1-163 (164)
154 cd04159 Arl10_like Arl10-like 99.9 1.6E-20 3.4E-25 135.7 15.1 150 42-212 2-158 (159)
155 cd04129 Rho2 Rho2 subfamily. 99.9 1.2E-20 2.5E-25 140.8 14.7 158 39-215 1-173 (187)
156 PRK15467 ethanolamine utilizat 99.9 2.6E-20 5.6E-25 135.2 15.6 146 41-216 3-148 (158)
157 PRK05291 trmE tRNA modificatio 99.9 2.1E-20 4.6E-25 156.1 16.9 154 39-216 215-371 (449)
158 PRK00093 GTP-binding protein D 99.9 2.7E-20 5.8E-25 156.0 17.4 155 40-212 2-159 (435)
159 cd01888 eIF2_gamma eIF2-gamma 99.9 5.2E-20 1.1E-24 139.0 16.8 159 40-214 1-198 (203)
160 PF10662 PduV-EutP: Ethanolami 99.9 3.7E-20 8E-25 129.4 14.5 141 40-212 2-143 (143)
161 TIGR00450 mnmE_trmE_thdF tRNA 99.9 6.1E-20 1.3E-24 152.7 18.3 157 38-216 202-361 (442)
162 PRK09518 bifunctional cytidyla 99.9 6E-20 1.3E-24 161.5 19.1 160 38-215 274-436 (712)
163 cd00880 Era_like Era (E. coli 99.9 9.8E-20 2.1E-24 131.4 16.7 156 44-213 1-162 (163)
164 KOG0086 GTPase Rab4, small G p 99.9 2.5E-20 5.4E-25 128.7 12.7 154 37-213 7-169 (214)
165 cd01891 TypA_BipA TypA (tyrosi 99.8 3.3E-20 7.2E-25 139.2 14.2 152 39-207 2-174 (194)
166 PF00025 Arf: ADP-ribosylation 99.8 1.3E-20 2.8E-25 139.1 11.7 154 37-213 12-174 (175)
167 PRK11058 GTPase HflX; Provisio 99.8 1.4E-19 3.1E-24 149.7 18.2 159 38-215 196-362 (426)
168 CHL00189 infB translation init 99.8 1.3E-19 2.7E-24 157.4 18.4 158 37-214 242-409 (742)
169 TIGR00487 IF-2 translation ini 99.8 2.3E-19 5E-24 153.5 18.5 158 36-213 84-248 (587)
170 TIGR00491 aIF-2 translation in 99.8 1.8E-19 3.9E-24 154.0 17.6 162 39-215 4-216 (590)
171 PTZ00132 GTP-binding nuclear p 99.8 3.9E-19 8.5E-24 135.4 17.8 156 35-215 5-168 (215)
172 cd01881 Obg_like The Obg-like 99.8 4.4E-20 9.6E-25 136.0 12.1 154 44-213 1-175 (176)
173 KOG1423 Ras-like GTPase ERA [C 99.8 1.1E-19 2.3E-24 139.4 14.3 177 37-215 70-271 (379)
174 KOG0395 Ras-related GTPase [Ge 99.8 1.2E-19 2.6E-24 135.4 13.7 158 38-216 2-166 (196)
175 PRK09554 feoB ferrous iron tra 99.8 3.7E-19 8E-24 156.3 18.9 162 39-214 3-167 (772)
176 cd01884 EF_Tu EF-Tu subfamily. 99.8 3.3E-19 7.1E-24 133.4 15.8 149 39-203 2-171 (195)
177 cd04165 GTPBP1_like GTPBP1-lik 99.8 2.6E-19 5.7E-24 136.6 15.1 156 41-212 1-220 (224)
178 COG1084 Predicted GTPase [Gene 99.8 5.5E-19 1.2E-23 137.1 16.9 163 37-214 166-335 (346)
179 TIGR00475 selB selenocysteine- 99.8 3.3E-19 7.2E-24 153.0 17.0 161 40-216 1-167 (581)
180 COG0370 FeoB Fe2+ transport sy 99.8 3.3E-19 7.2E-24 150.3 16.5 158 39-215 3-164 (653)
181 PRK05306 infB translation init 99.8 1.5E-19 3.3E-24 158.1 14.7 158 36-213 287-450 (787)
182 KOG1145 Mitochondrial translat 99.8 7.5E-19 1.6E-23 143.9 17.0 171 24-217 138-318 (683)
183 cd04102 RabL3 RabL3 (Rab-like3 99.8 2.5E-18 5.4E-23 129.2 17.5 157 40-215 1-197 (202)
184 TIGR00231 small_GTP small GTP- 99.8 1.1E-18 2.3E-23 125.8 14.4 148 39-211 1-160 (161)
185 KOG0088 GTPase Rab21, small G 99.8 4.1E-20 8.8E-25 128.4 6.3 159 36-214 10-174 (218)
186 cd04166 CysN_ATPS CysN_ATPS su 99.8 5E-19 1.1E-23 134.1 12.7 147 41-206 1-185 (208)
187 PF01926 MMR_HSR1: 50S ribosom 99.8 3.3E-19 7.1E-24 122.8 10.6 113 41-159 1-116 (116)
188 TIGR01393 lepA GTP-binding pro 99.8 2.4E-18 5.3E-23 147.9 17.6 156 39-214 3-179 (595)
189 PRK10512 selenocysteinyl-tRNA- 99.8 4.1E-18 8.9E-23 146.8 18.4 159 41-215 2-166 (614)
190 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 2.2E-18 4.7E-23 129.5 14.7 172 40-216 1-185 (196)
191 COG0536 Obg Predicted GTPase [ 99.8 4.4E-18 9.6E-23 132.7 16.0 191 12-217 118-335 (369)
192 KOG0097 GTPase Rab14, small G 99.8 3.2E-18 6.8E-23 116.9 13.2 158 36-213 8-171 (215)
193 KOG0073 GTP-binding ADP-ribosy 99.8 2.1E-18 4.7E-23 120.5 12.5 159 37-215 14-178 (185)
194 KOG0081 GTPase Rab27, small G 99.8 9.6E-20 2.1E-24 126.6 5.7 159 39-215 9-181 (219)
195 cd04104 p47_IIGP_like p47 (47- 99.8 4.8E-18 1E-22 127.7 15.0 168 39-216 1-185 (197)
196 PRK04004 translation initiatio 99.8 8.4E-18 1.8E-22 144.2 18.1 162 38-214 5-217 (586)
197 cd00882 Ras_like_GTPase Ras-li 99.8 4E-18 8.8E-23 121.6 13.6 147 44-211 1-156 (157)
198 COG2262 HflX GTPases [General 99.8 6.2E-18 1.4E-22 135.0 15.6 162 34-215 187-356 (411)
199 COG0532 InfB Translation initi 99.8 1.1E-17 2.3E-22 137.6 17.2 157 37-216 3-171 (509)
200 TIGR03680 eif2g_arch translati 99.8 5.2E-18 1.1E-22 140.5 15.1 160 38-214 3-195 (406)
201 PRK04000 translation initiatio 99.8 7.5E-18 1.6E-22 139.5 15.9 161 37-214 7-200 (411)
202 TIGR00437 feoB ferrous iron tr 99.8 9.6E-18 2.1E-22 144.2 16.6 151 46-214 1-154 (591)
203 PRK05433 GTP-binding protein L 99.8 1.2E-17 2.6E-22 143.7 17.1 157 37-214 5-183 (600)
204 PRK12736 elongation factor Tu; 99.8 6.9E-18 1.5E-22 139.2 14.9 162 37-214 10-200 (394)
205 PRK12317 elongation factor 1-a 99.8 4.6E-18 1E-22 141.9 14.0 155 37-206 4-196 (425)
206 cd04105 SR_beta Signal recogni 99.8 1.2E-17 2.6E-22 126.0 14.5 155 40-212 1-202 (203)
207 KOG1489 Predicted GTP-binding 99.8 7.3E-18 1.6E-22 130.1 12.6 157 39-213 196-365 (366)
208 cd01896 DRG The developmentall 99.8 4.4E-17 9.6E-22 125.3 16.1 151 41-215 2-226 (233)
209 COG3596 Predicted GTPase [Gene 99.8 1.6E-17 3.4E-22 126.3 13.0 173 34-214 34-221 (296)
210 cd01883 EF1_alpha Eukaryotic e 99.8 1.7E-17 3.8E-22 126.6 13.3 148 41-204 1-194 (219)
211 KOG0075 GTP-binding ADP-ribosy 99.8 1.7E-17 3.6E-22 114.0 11.2 158 39-218 20-185 (186)
212 PLN00023 GTP-binding protein; 99.7 3.5E-17 7.7E-22 129.1 14.0 118 33-165 15-166 (334)
213 PRK12735 elongation factor Tu; 99.7 6.6E-17 1.4E-21 133.5 16.2 160 38-213 11-201 (396)
214 CHL00071 tufA elongation facto 99.7 6.1E-17 1.3E-21 134.2 16.0 150 37-202 10-180 (409)
215 COG1100 GTPase SAR1 and relate 99.7 1.1E-16 2.4E-21 122.2 16.2 162 40-215 6-185 (219)
216 PRK00049 elongation factor Tu; 99.7 9.3E-17 2E-21 132.6 16.6 160 38-213 11-201 (396)
217 cd04168 TetM_like Tet(M)-like 99.7 1.1E-16 2.4E-21 123.3 15.7 111 41-164 1-130 (237)
218 TIGR00485 EF-Tu translation el 99.7 7.2E-17 1.6E-21 133.3 15.1 149 37-201 10-179 (394)
219 KOG1532 GTPase XAB1, interacts 99.7 1.4E-17 3.1E-22 126.1 9.9 126 86-217 117-266 (366)
220 PRK09866 hypothetical protein; 99.7 2.8E-16 6.1E-21 132.5 18.4 118 85-212 230-350 (741)
221 KOG1191 Mitochondrial GTPase [ 99.7 5.3E-17 1.1E-21 131.9 13.3 169 39-217 268-452 (531)
222 TIGR02034 CysN sulfate adenyly 99.7 9.4E-17 2E-21 132.9 15.1 148 40-205 1-187 (406)
223 KOG0083 GTPase Rab26/Rab37, sm 99.7 1.2E-18 2.5E-23 117.9 2.9 153 44-217 2-162 (192)
224 PRK10218 GTP-binding protein; 99.7 1.5E-16 3.3E-21 136.5 16.6 159 38-213 4-193 (607)
225 KOG4252 GTP-binding protein [S 99.7 3.2E-18 6.8E-23 121.5 4.8 159 37-215 18-181 (246)
226 COG2229 Predicted GTPase [Gene 99.7 5.8E-16 1.3E-20 110.9 16.1 156 37-213 8-176 (187)
227 PLN03127 Elongation factor Tu; 99.7 2.1E-16 4.5E-21 131.8 15.7 162 37-214 59-251 (447)
228 TIGR01394 TypA_BipA GTP-bindin 99.7 1.4E-16 3.1E-21 136.7 15.2 158 40-214 2-190 (594)
229 TIGR00483 EF-1_alpha translati 99.7 1.2E-16 2.6E-21 133.4 13.6 155 37-205 5-197 (426)
230 cd01850 CDC_Septin CDC/Septin. 99.7 2.9E-16 6.3E-21 123.5 14.4 128 37-165 2-158 (276)
231 PTZ00327 eukaryotic translatio 99.7 2.4E-16 5.2E-21 131.3 14.5 161 37-214 32-232 (460)
232 KOG0076 GTP-binding ADP-ribosy 99.7 4E-17 8.7E-22 115.3 7.7 161 36-216 14-188 (197)
233 PRK05506 bifunctional sulfate 99.7 1.7E-16 3.6E-21 138.3 13.2 150 37-205 22-211 (632)
234 KOG0393 Ras-related small GTPa 99.7 2.2E-17 4.8E-22 121.1 6.0 156 39-214 4-178 (198)
235 PLN03126 Elongation factor Tu; 99.7 8.3E-16 1.8E-20 128.9 16.0 149 37-201 79-248 (478)
236 PRK05124 cysN sulfate adenylyl 99.7 2.7E-16 5.8E-21 132.3 12.9 152 37-206 25-216 (474)
237 KOG0070 GTP-binding ADP-ribosy 99.7 2.1E-16 4.6E-21 113.2 10.0 161 35-217 13-180 (181)
238 cd04167 Snu114p Snu114p subfam 99.7 6E-16 1.3E-20 117.7 12.8 110 41-163 2-136 (213)
239 cd01886 EF-G Elongation factor 99.7 6.8E-16 1.5E-20 120.9 13.0 111 41-164 1-130 (270)
240 PF08477 Miro: Miro-like prote 99.7 2E-16 4.4E-21 109.2 8.6 108 41-161 1-119 (119)
241 PTZ00141 elongation factor 1- 99.7 1.9E-15 4.1E-20 126.3 15.5 152 38-205 6-203 (446)
242 cd04170 EF-G_bact Elongation f 99.7 8.6E-16 1.9E-20 120.8 12.2 111 41-164 1-130 (268)
243 KOG1490 GTP-binding protein CR 99.7 2.1E-16 4.6E-21 128.5 8.1 168 36-214 165-340 (620)
244 cd01885 EF2 EF2 (for archaea a 99.7 5.3E-15 1.2E-19 112.6 15.1 110 41-163 2-138 (222)
245 PTZ00099 rab6; Provisional 99.7 4.5E-15 9.8E-20 109.4 14.0 130 64-216 5-143 (176)
246 PRK00741 prfC peptide chain re 99.7 6.4E-15 1.4E-19 125.1 16.5 115 37-164 8-145 (526)
247 COG4917 EutP Ethanolamine util 99.7 2.7E-15 5.8E-20 100.6 10.9 143 40-213 2-144 (148)
248 PRK13351 elongation factor G; 99.6 5.1E-15 1.1E-19 130.4 15.8 118 34-164 3-139 (687)
249 PF04548 AIG1: AIG1 family; I 99.6 2.3E-15 5E-20 114.3 11.7 169 40-216 1-187 (212)
250 PRK12739 elongation factor G; 99.6 1E-14 2.2E-19 128.3 16.4 116 36-164 5-139 (691)
251 cd04169 RF3 RF3 subfamily. Pe 99.6 1.7E-14 3.8E-19 112.9 15.9 114 39-165 2-138 (267)
252 COG1163 DRG Predicted GTPase [ 99.6 7.6E-15 1.6E-19 114.0 13.5 156 36-215 60-289 (365)
253 KOG0462 Elongation factor-type 99.6 8.7E-15 1.9E-19 120.4 13.7 159 34-213 55-233 (650)
254 TIGR00503 prfC peptide chain r 99.6 2.7E-14 5.9E-19 121.3 16.7 114 37-163 9-145 (527)
255 cd01853 Toc34_like Toc34-like 99.6 3.7E-14 7.9E-19 109.7 15.8 129 37-168 29-167 (249)
256 cd01882 BMS1 Bms1. Bms1 is an 99.6 1.6E-14 3.4E-19 110.6 13.7 145 37-201 37-182 (225)
257 PLN00043 elongation factor 1-a 99.6 2.8E-14 6E-19 119.2 15.1 152 38-205 6-203 (447)
258 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 1.7E-14 3.7E-19 109.9 12.3 163 41-216 1-174 (232)
259 PRK00007 elongation factor G; 99.6 2E-14 4.4E-19 126.4 14.6 117 36-165 7-142 (693)
260 PF09439 SRPRB: Signal recogni 99.6 4.1E-15 8.9E-20 108.6 7.6 125 39-179 3-141 (181)
261 PRK13768 GTPase; Provisional 99.6 2.6E-14 5.6E-19 111.2 12.2 122 86-214 98-246 (253)
262 TIGR00484 EF-G translation elo 99.6 6.1E-14 1.3E-18 123.5 15.7 117 36-165 7-142 (689)
263 KOG0090 Signal recognition par 99.6 3.3E-14 7.2E-19 104.1 11.3 163 37-213 36-237 (238)
264 cd01899 Ygr210 Ygr210 subfamil 99.6 6.5E-14 1.4E-18 111.9 13.7 84 42-133 1-111 (318)
265 KOG3883 Ras family small GTPas 99.6 1.5E-13 3.3E-18 95.3 13.5 157 37-214 7-174 (198)
266 COG5256 TEF1 Translation elong 99.6 2.1E-13 4.5E-18 109.3 15.2 151 37-205 5-201 (428)
267 PRK14845 translation initiatio 99.6 9.1E-14 2E-18 124.8 14.7 151 50-215 472-673 (1049)
268 PRK09602 translation-associate 99.6 2.3E-13 4.9E-18 111.9 15.4 85 40-132 2-113 (396)
269 COG0481 LepA Membrane GTPase L 99.5 6.7E-14 1.4E-18 113.6 11.3 157 36-213 6-184 (603)
270 PRK09435 membrane ATPase/prote 99.5 3.3E-14 7.2E-19 113.7 9.6 110 85-217 149-262 (332)
271 TIGR00991 3a0901s02IAP34 GTP-b 99.5 2.3E-13 5E-18 107.0 13.0 125 37-166 36-169 (313)
272 KOG0461 Selenocysteine-specifi 99.5 7.7E-13 1.7E-17 103.7 15.1 162 39-213 7-191 (522)
273 KOG0071 GTP-binding ADP-ribosy 99.5 5.9E-13 1.3E-17 91.1 12.4 157 38-215 16-178 (180)
274 KOG0072 GTP-binding ADP-ribosy 99.5 7.7E-14 1.7E-18 95.8 7.9 158 38-217 17-181 (182)
275 PF05049 IIGP: Interferon-indu 99.5 1.1E-13 2.3E-18 111.7 9.9 166 38-213 34-216 (376)
276 smart00053 DYNc Dynamin, GTPas 99.5 8.1E-13 1.7E-17 101.3 13.7 78 86-165 126-207 (240)
277 KOG0074 GTP-binding ADP-ribosy 99.5 9E-14 2E-18 95.2 6.4 155 37-212 15-176 (185)
278 PRK12740 elongation factor G; 99.5 1.4E-12 3E-17 114.9 15.3 107 45-164 1-126 (668)
279 KOG1707 Predicted Ras related/ 99.5 2.7E-13 5.8E-18 112.5 10.1 158 37-213 7-173 (625)
280 COG1217 TypA Predicted membran 99.5 6.9E-13 1.5E-17 107.5 11.7 164 38-214 4-194 (603)
281 COG3276 SelB Selenocysteine-sp 99.5 2.2E-12 4.9E-17 104.2 14.4 155 41-215 2-162 (447)
282 KOG1144 Translation initiation 99.5 1.8E-12 3.9E-17 110.1 14.2 164 39-217 475-689 (1064)
283 PLN00116 translation elongatio 99.5 1.8E-12 3.9E-17 116.2 15.2 113 37-163 17-163 (843)
284 PTZ00416 elongation factor 2; 99.5 1.6E-12 3.4E-17 116.4 14.7 113 37-163 17-157 (836)
285 TIGR00073 hypB hydrogenase acc 99.5 1.7E-12 3.7E-17 98.3 12.3 82 123-214 125-206 (207)
286 PF03308 ArgK: ArgK protein; 99.4 6E-13 1.3E-17 101.4 9.2 152 37-217 27-232 (266)
287 PF00735 Septin: Septin; Inte 99.4 4.3E-12 9.3E-17 99.9 14.3 127 39-166 4-158 (281)
288 TIGR00993 3a0901s04IAP86 chlor 99.4 6.6E-12 1.4E-16 106.8 15.6 130 37-167 116-253 (763)
289 TIGR00101 ureG urease accessor 99.4 5.4E-12 1.2E-16 94.7 13.4 84 122-215 113-196 (199)
290 COG1703 ArgK Putative periplas 99.4 7.9E-13 1.7E-17 102.1 8.8 158 36-217 48-256 (323)
291 TIGR02836 spore_IV_A stage IV 99.4 3.5E-12 7.6E-17 103.1 12.6 162 36-212 14-231 (492)
292 PRK07560 elongation factor EF- 99.4 5.3E-12 1.1E-16 111.9 14.9 115 37-164 18-153 (731)
293 PTZ00258 GTP-binding protein; 99.4 1.3E-11 2.8E-16 100.7 15.8 88 37-132 19-126 (390)
294 COG5257 GCD11 Translation init 99.4 2.1E-12 4.6E-17 100.3 10.6 161 37-214 8-201 (415)
295 TIGR00490 aEF-2 translation el 99.4 2.1E-12 4.6E-17 114.1 12.1 115 38-165 18-153 (720)
296 COG0378 HypB Ni2+-binding GTPa 99.4 6.8E-13 1.5E-17 96.5 7.4 163 40-214 14-200 (202)
297 PF03029 ATP_bind_1: Conserved 99.4 1.5E-12 3.2E-17 100.3 9.5 94 122-215 123-237 (238)
298 PF00350 Dynamin_N: Dynamin fa 99.4 2.3E-12 5E-17 94.3 10.1 66 86-160 102-168 (168)
299 COG2895 CysN GTPases - Sulfate 99.4 4E-12 8.6E-17 100.0 11.4 153 38-204 5-192 (431)
300 TIGR00750 lao LAO/AO transport 99.4 7E-12 1.5E-16 100.1 11.9 112 84-215 126-238 (300)
301 COG4108 PrfC Peptide chain rel 99.3 1.4E-11 3.1E-16 99.4 11.4 113 39-164 12-147 (528)
302 COG5019 CDC3 Septin family pro 99.3 3.2E-11 7E-16 95.6 13.2 133 34-167 18-179 (373)
303 PRK10463 hydrogenase nickel in 99.3 1.8E-11 3.9E-16 95.8 11.8 60 149-214 229-288 (290)
304 KOG0410 Predicted GTP binding 99.3 6.1E-12 1.3E-16 97.9 8.6 158 36-216 175-342 (410)
305 KOG0077 Vesicle coat complex C 99.3 5.1E-12 1.1E-16 89.0 7.2 156 38-213 19-191 (193)
306 KOG0096 GTPase Ran/TC4/GSP1 (n 99.3 4E-12 8.6E-17 91.5 5.8 152 38-214 9-168 (216)
307 cd01858 NGP_1 NGP-1. Autoanti 99.3 1.6E-11 3.4E-16 89.0 7.4 57 38-95 101-157 (157)
308 KOG2655 Septin family protein 99.3 1.3E-10 2.8E-15 92.8 12.6 134 32-166 14-174 (366)
309 COG0480 FusA Translation elong 99.3 5.9E-11 1.3E-15 103.2 11.5 117 36-165 7-143 (697)
310 KOG0458 Elongation factor 1 al 99.3 1.5E-10 3.3E-15 96.4 13.2 152 36-205 174-372 (603)
311 KOG1673 Ras GTPases [General f 99.2 2.1E-11 4.5E-16 85.0 6.5 155 38-211 19-182 (205)
312 cd04178 Nucleostemin_like Nucl 99.2 2.8E-11 6E-16 88.7 7.4 58 37-95 115-172 (172)
313 cd01859 MJ1464 MJ1464. This f 99.2 2.6E-10 5.5E-15 82.5 11.7 95 108-215 2-96 (156)
314 KOG1547 Septin CDC10 and relat 99.2 7.9E-11 1.7E-15 88.2 8.1 139 26-166 33-200 (336)
315 KOG1954 Endocytosis/signaling 99.2 9.8E-10 2.1E-14 87.2 13.6 127 36-165 55-226 (532)
316 PRK09601 GTP-binding protein Y 99.2 2E-10 4.3E-15 92.8 9.7 85 40-132 3-107 (364)
317 COG0050 TufB GTPases - transla 99.2 4.9E-10 1.1E-14 86.4 11.1 148 38-199 11-177 (394)
318 cd01900 YchF YchF subfamily. 99.1 1.7E-10 3.7E-15 90.3 7.9 83 42-132 1-103 (274)
319 TIGR03597 GTPase_YqeH ribosome 99.1 1.1E-10 2.3E-15 95.5 6.4 122 40-164 155-280 (360)
320 cd01857 HSR1_MMR1 HSR1/MMR1. 99.1 2.1E-10 4.5E-15 81.6 7.1 55 41-96 85-139 (141)
321 cd01858 NGP_1 NGP-1. Autoanti 99.1 8.2E-10 1.8E-14 79.9 9.6 87 119-214 6-94 (157)
322 cd01855 YqeH YqeH. YqeH is an 99.1 2.5E-09 5.5E-14 79.8 11.9 98 109-214 25-124 (190)
323 KOG1486 GTP-binding protein DR 99.1 3.2E-09 6.8E-14 80.3 11.7 93 35-135 58-153 (364)
324 KOG4423 GTP-binding protein-li 99.1 8.8E-12 1.9E-16 89.5 -1.9 160 37-214 23-193 (229)
325 KOG3886 GTP-binding protein [S 99.1 2.5E-10 5.4E-15 85.0 5.4 151 39-200 4-164 (295)
326 PRK09563 rbgA GTPase YlqF; Rev 99.1 8.1E-10 1.8E-14 87.7 8.8 62 37-99 119-180 (287)
327 COG1161 Predicted GTPases [Gen 99.1 5.5E-10 1.2E-14 89.8 7.5 60 39-99 132-191 (322)
328 cd01849 YlqF_related_GTPase Yl 99.0 7.1E-10 1.5E-14 80.1 7.2 58 37-95 98-155 (155)
329 COG5258 GTPBP1 GTPase [General 99.0 1.2E-09 2.6E-14 87.1 8.9 166 37-213 115-337 (527)
330 cd01855 YqeH YqeH. YqeH is an 99.0 5.3E-10 1.2E-14 83.5 6.5 57 39-95 127-190 (190)
331 TIGR03596 GTPase_YlqF ribosome 99.0 1.6E-09 3.6E-14 85.5 9.1 60 38-98 117-176 (276)
332 cd01849 YlqF_related_GTPase Yl 99.0 3.9E-09 8.4E-14 76.3 10.1 82 123-213 1-83 (155)
333 KOG0448 Mitofusin 1 GTPase, in 99.0 1.1E-08 2.4E-13 86.9 12.9 148 37-199 107-310 (749)
334 KOG3905 Dynein light intermedi 99.0 1.7E-08 3.6E-13 79.1 12.5 161 39-213 52-288 (473)
335 cd01856 YlqF YlqF. Proteins o 99.0 2.7E-09 5.7E-14 78.4 7.8 57 38-95 114-170 (171)
336 cd01856 YlqF YlqF. Proteins o 99.0 1.7E-08 3.7E-13 74.1 11.7 87 116-214 14-100 (171)
337 PF03193 DUF258: Protein of un 99.0 4.1E-10 9E-15 80.8 2.9 59 40-98 36-100 (161)
338 PRK12288 GTPase RsgA; Reviewed 99.0 3.2E-09 6.9E-14 86.1 8.3 58 41-99 207-271 (347)
339 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 5.8E-09 1.3E-13 74.1 8.7 75 117-201 7-83 (141)
340 cd01859 MJ1464 MJ1464. This f 98.9 4.5E-09 9.8E-14 75.9 7.6 57 38-95 100-156 (156)
341 TIGR00157 ribosome small subun 98.9 3.6E-09 7.9E-14 82.0 7.3 95 106-212 24-120 (245)
342 KOG0460 Mitochondrial translat 98.9 8.2E-09 1.8E-13 81.2 9.0 149 37-199 52-219 (449)
343 PRK12289 GTPase RsgA; Reviewed 98.9 3.4E-09 7.3E-14 86.0 7.1 59 41-100 174-239 (352)
344 KOG1707 Predicted Ras related/ 98.9 4.4E-08 9.6E-13 82.0 13.7 160 32-214 418-582 (625)
345 TIGR03596 GTPase_YlqF ribosome 98.9 3.5E-08 7.6E-13 78.0 12.5 94 110-215 10-103 (276)
346 TIGR03348 VI_IcmF type VI secr 98.9 2.2E-08 4.8E-13 93.1 11.2 125 39-165 111-258 (1169)
347 TIGR03597 GTPase_YqeH ribosome 98.8 5.4E-08 1.2E-12 79.7 12.1 102 104-213 49-151 (360)
348 cd01851 GBP Guanylate-binding 98.8 2.8E-07 6E-12 70.6 15.2 90 38-133 6-103 (224)
349 TIGR00157 ribosome small subun 98.8 9.2E-09 2E-13 79.8 7.1 58 40-99 121-185 (245)
350 PRK13796 GTPase YqeH; Provisio 98.8 6.3E-09 1.4E-13 85.2 6.2 57 40-96 161-221 (365)
351 COG1162 Predicted GTPases [Gen 98.8 1.5E-08 3.2E-13 79.4 7.8 60 41-100 166-231 (301)
352 KOG0468 U5 snRNP-specific prot 98.8 1.3E-08 2.8E-13 86.3 7.9 113 39-164 128-263 (971)
353 PRK09563 rbgA GTPase YlqF; Rev 98.8 7.2E-08 1.6E-12 76.6 11.9 94 110-215 13-106 (287)
354 KOG1143 Predicted translation 98.8 1.9E-08 4.2E-13 80.2 8.4 162 37-210 165-383 (591)
355 smart00010 small_GTPase Small 98.8 1.7E-08 3.6E-13 69.7 6.5 112 40-204 1-115 (124)
356 KOG0463 GTP-binding protein GP 98.8 3.3E-08 7.3E-13 78.9 8.7 87 122-211 245-354 (641)
357 PRK00098 GTPase RsgA; Reviewed 98.8 2.7E-08 5.8E-13 79.4 8.1 57 40-97 165-228 (298)
358 KOG0464 Elongation factor G [T 98.8 1.7E-08 3.6E-13 81.6 6.9 127 26-165 24-169 (753)
359 KOG1487 GTP-binding protein DR 98.8 3.1E-08 6.8E-13 75.3 7.9 93 37-137 57-152 (358)
360 KOG0466 Translation initiation 98.8 1.4E-08 3.1E-13 78.8 6.1 159 37-213 36-239 (466)
361 COG0012 Predicted GTPase, prob 98.8 3.2E-08 7E-13 79.3 8.1 87 39-133 2-109 (372)
362 KOG1424 Predicted GTP-binding 98.8 9.7E-09 2.1E-13 84.7 5.1 61 39-100 314-374 (562)
363 PF05783 DLIC: Dynein light in 98.8 9.8E-08 2.1E-12 80.1 11.0 66 150-215 196-264 (472)
364 KOG0467 Translation elongation 98.7 1.2E-07 2.5E-12 81.7 10.7 114 35-163 5-137 (887)
365 PRK12289 GTPase RsgA; Reviewed 98.7 9.2E-08 2E-12 77.7 9.5 81 122-212 90-172 (352)
366 cd01854 YjeQ_engC YjeQ/EngC. 98.7 7.8E-08 1.7E-12 76.4 8.1 57 40-97 162-225 (287)
367 COG5192 BMS1 GTP-binding prote 98.7 2E-07 4.3E-12 78.2 10.2 136 38-199 68-210 (1077)
368 KOG0465 Mitochondrial elongati 98.6 3.6E-08 7.7E-13 82.9 5.1 139 37-196 37-194 (721)
369 PRK00098 GTPase RsgA; Reviewed 98.6 1.9E-07 4.1E-12 74.6 9.0 83 120-211 79-163 (298)
370 cd00066 G-alpha G protein alph 98.6 3E-07 6.4E-12 74.1 9.7 113 100-215 166-311 (317)
371 KOG0447 Dynamin-like GTP bindi 98.6 3.2E-06 6.8E-11 70.9 15.6 128 35-165 304-494 (980)
372 PRK10416 signal recognition pa 98.6 1.4E-06 3.1E-11 70.0 12.7 151 39-208 114-303 (318)
373 KOG2423 Nucleolar GTPase [Gene 98.6 5.1E-08 1.1E-12 78.3 3.8 62 37-99 305-366 (572)
374 cd03112 CobW_like The function 98.6 4.5E-07 9.7E-12 65.7 8.4 69 85-162 87-158 (158)
375 COG3523 IcmF Type VI protein s 98.6 5.2E-07 1.1E-11 82.5 10.5 124 40-165 126-271 (1188)
376 PRK14974 cell division protein 98.5 1.4E-06 3.1E-11 70.3 11.3 101 85-208 223-323 (336)
377 TIGR00092 GTP-binding protein 98.5 5E-07 1.1E-11 73.4 8.7 87 40-133 3-109 (368)
378 TIGR00064 ftsY signal recognit 98.5 3.5E-06 7.6E-11 66.3 13.1 106 85-208 155-261 (272)
379 smart00275 G_alpha G protein a 98.5 1E-06 2.2E-11 71.6 10.0 112 100-214 189-333 (342)
380 PRK13796 GTPase YqeH; Provisio 98.5 2.9E-06 6.3E-11 69.7 12.6 88 122-214 69-158 (365)
381 COG0523 Putative GTPases (G3E 98.5 2.4E-06 5.2E-11 68.6 11.7 142 40-197 2-184 (323)
382 KOG1491 Predicted GTP-binding 98.5 6.7E-07 1.5E-11 70.6 8.1 89 37-133 18-126 (391)
383 cd01854 YjeQ_engC YjeQ/EngC. 98.5 8E-07 1.7E-11 70.6 8.6 81 122-212 79-161 (287)
384 PRK12288 GTPase RsgA; Reviewed 98.5 1.1E-06 2.4E-11 71.4 9.5 85 121-212 120-205 (347)
385 KOG2484 GTPase [General functi 98.4 1.6E-07 3.4E-12 75.5 3.7 65 38-103 251-315 (435)
386 KOG3859 Septins (P-loop GTPase 98.4 1.5E-06 3.2E-11 67.0 8.0 132 33-165 36-191 (406)
387 cd04178 Nucleostemin_like Nucl 98.4 1.6E-06 3.4E-11 63.7 7.7 56 123-185 1-58 (172)
388 TIGR02475 CobW cobalamin biosy 98.4 1E-05 2.2E-10 65.8 12.8 24 39-62 4-27 (341)
389 PF00448 SRP54: SRP54-type pro 98.4 8.9E-07 1.9E-11 66.3 6.0 72 85-165 84-155 (196)
390 TIGR01425 SRP54_euk signal rec 98.4 6.8E-06 1.5E-10 68.3 11.5 116 39-164 100-253 (429)
391 PRK11889 flhF flagellar biosyn 98.3 5.6E-06 1.2E-10 67.7 10.4 144 39-205 241-418 (436)
392 PRK14722 flhF flagellar biosyn 98.3 3E-06 6.4E-11 69.3 8.3 24 39-62 137-160 (374)
393 PRK01889 GTPase RsgA; Reviewed 98.3 4.6E-06 1E-10 68.2 9.3 82 120-211 111-193 (356)
394 cd03114 ArgK-like The function 98.3 3.3E-06 7.1E-11 60.4 7.0 22 41-62 1-22 (148)
395 PRK12727 flagellar biosynthesi 98.3 9.9E-06 2.1E-10 68.7 10.2 24 39-62 350-373 (559)
396 PF02492 cobW: CobW/HypB/UreG, 98.3 1.6E-05 3.6E-10 58.7 10.4 69 86-165 86-156 (178)
397 KOG3887 Predicted small GTPase 98.2 1.4E-05 3.1E-10 60.5 9.5 119 38-168 26-153 (347)
398 KOG0459 Polypeptide release fa 98.2 1.2E-06 2.6E-11 70.7 3.8 155 37-207 77-278 (501)
399 KOG1534 Putative transcription 98.2 4.2E-06 9.2E-11 62.0 5.8 24 39-62 3-26 (273)
400 KOG0705 GTPase-activating prot 98.2 4.7E-06 1E-10 69.7 6.6 154 38-214 29-188 (749)
401 PRK11537 putative GTP-binding 98.2 7.7E-05 1.7E-09 60.1 13.3 24 39-62 4-27 (318)
402 KOG2485 Conserved ATP/GTP bind 98.2 5E-06 1.1E-10 65.1 6.0 65 36-100 140-211 (335)
403 COG1618 Predicted nucleotide k 98.1 0.00018 3.9E-09 51.4 13.0 25 38-62 4-28 (179)
404 PRK00771 signal recognition pa 98.1 3E-05 6.4E-10 64.9 10.5 24 38-61 94-117 (437)
405 PRK14723 flhF flagellar biosyn 98.1 3.9E-05 8.3E-10 67.9 11.1 23 40-62 186-208 (767)
406 KOG2743 Cobalamin synthesis pr 98.1 6E-05 1.3E-09 58.9 10.4 128 31-166 49-227 (391)
407 PRK14721 flhF flagellar biosyn 98.1 2.6E-05 5.7E-10 64.8 8.8 24 39-62 191-214 (420)
408 KOG2484 GTPase [General functi 98.0 4.2E-05 9.1E-10 61.9 9.2 76 102-187 130-207 (435)
409 PRK05703 flhF flagellar biosyn 98.0 9.1E-05 2E-09 62.0 11.5 23 40-62 222-244 (424)
410 COG1419 FlhF Flagellar GTP-bin 98.0 4.7E-05 1E-09 62.2 9.3 116 39-164 203-352 (407)
411 PRK10867 signal recognition pa 98.0 0.00012 2.6E-09 61.2 11.7 23 39-61 100-122 (433)
412 PRK12724 flagellar biosynthesi 98.0 4E-05 8.6E-10 63.4 8.4 119 40-164 224-373 (432)
413 PRK12726 flagellar biosynthesi 98.0 0.00019 4E-09 58.7 11.6 23 39-61 206-228 (407)
414 cd03115 SRP The signal recogni 98.0 3.6E-05 7.8E-10 56.5 7.1 71 85-165 83-154 (173)
415 cd02038 FleN-like FleN is a me 98.0 5.5E-05 1.2E-09 53.5 7.7 105 43-163 4-110 (139)
416 KOG1424 Predicted GTP-binding 97.9 4.7E-05 1E-09 63.5 8.2 79 111-199 164-244 (562)
417 KOG2423 Nucleolar GTPase [Gene 97.9 0.00012 2.6E-09 59.4 10.2 97 110-215 202-300 (572)
418 TIGR00959 ffh signal recogniti 97.9 0.00022 4.8E-09 59.6 12.2 71 85-164 183-253 (428)
419 COG1161 Predicted GTPases [Gen 97.9 0.00013 2.7E-09 59.0 10.1 91 110-211 23-113 (322)
420 PRK06731 flhF flagellar biosyn 97.9 0.00012 2.7E-09 57.4 9.7 145 38-205 74-252 (270)
421 PRK01889 GTPase RsgA; Reviewed 97.9 2.7E-05 5.9E-10 63.8 6.0 57 40-97 196-259 (356)
422 PF09547 Spore_IV_A: Stage IV 97.9 0.00032 7E-09 57.7 11.9 164 37-213 15-232 (492)
423 PRK06995 flhF flagellar biosyn 97.9 0.00047 1E-08 58.4 13.3 23 40-62 257-279 (484)
424 COG1162 Predicted GTPases [Gen 97.9 6.1E-05 1.3E-09 59.3 7.3 83 122-212 80-164 (301)
425 COG3640 CooC CO dehydrogenase 97.9 3E-05 6.5E-10 58.6 5.1 43 121-163 155-198 (255)
426 PRK13695 putative NTPase; Prov 97.9 0.00065 1.4E-08 49.9 12.3 75 121-215 96-173 (174)
427 PRK12723 flagellar biosynthesi 97.8 0.00021 4.5E-09 59.0 10.4 116 39-164 174-326 (388)
428 KOG0082 G-protein alpha subuni 97.8 0.00062 1.3E-08 55.1 11.8 117 86-215 196-344 (354)
429 PF06858 NOG1: Nucleolar GTP-b 97.7 0.00017 3.8E-09 42.1 5.4 40 122-161 14-58 (58)
430 KOG0446 Vacuolar sorting prote 97.7 6.1E-05 1.3E-09 66.1 4.9 127 37-166 27-215 (657)
431 TIGR03574 selen_PSTK L-seryl-t 97.6 0.0011 2.3E-08 51.7 10.9 90 125-214 69-167 (249)
432 PF13207 AAA_17: AAA domain; P 97.5 8.4E-05 1.8E-09 51.0 3.2 22 41-62 1-22 (121)
433 cd03111 CpaE_like This protein 97.5 0.00029 6.4E-09 47.3 5.7 98 43-159 3-106 (106)
434 KOG0469 Elongation factor 2 [T 97.5 0.00035 7.7E-09 58.4 6.9 131 37-182 17-182 (842)
435 KOG1533 Predicted GTPase [Gene 97.5 0.00012 2.6E-09 55.4 3.8 21 40-60 3-23 (290)
436 PF00004 AAA: ATPase family as 97.5 0.0009 2E-08 46.3 7.8 21 42-62 1-21 (132)
437 PF08433 KTI12: Chromatin asso 97.5 0.00029 6.2E-09 55.5 5.7 151 40-212 2-171 (270)
438 COG3840 ThiQ ABC-type thiamine 97.4 0.00012 2.6E-09 53.5 3.0 24 39-62 25-48 (231)
439 COG1116 TauB ABC-type nitrate/ 97.4 0.00012 2.7E-09 55.9 3.0 22 41-62 31-52 (248)
440 PRK14737 gmk guanylate kinase; 97.4 0.00014 3.1E-09 54.0 3.3 38 39-77 4-41 (186)
441 COG0194 Gmk Guanylate kinase [ 97.4 7.8E-05 1.7E-09 54.5 1.8 24 40-63 5-28 (191)
442 COG1136 SalX ABC-type antimicr 97.4 0.00014 3.1E-09 55.2 3.0 22 41-62 33-54 (226)
443 COG0563 Adk Adenylate kinase a 97.4 0.00015 3.2E-09 53.5 3.0 22 41-62 2-23 (178)
444 PF13555 AAA_29: P-loop contai 97.4 0.0002 4.4E-09 42.8 3.0 22 41-62 25-46 (62)
445 PRK07261 topology modulation p 97.4 0.00016 3.5E-09 53.0 3.1 22 41-62 2-23 (171)
446 cd00071 GMPK Guanosine monopho 97.4 0.00024 5.2E-09 50.1 3.8 21 42-62 2-22 (137)
447 PRK08118 topology modulation p 97.3 0.00019 4.1E-09 52.4 3.2 23 40-62 2-24 (167)
448 KOG0780 Signal recognition par 97.3 0.0012 2.7E-08 53.5 7.7 26 37-62 99-124 (483)
449 cd02019 NK Nucleoside/nucleoti 97.3 0.00026 5.7E-09 43.6 2.9 21 42-62 2-22 (69)
450 PF00005 ABC_tran: ABC transpo 97.2 0.00027 5.9E-09 49.6 3.1 23 40-62 12-34 (137)
451 cd01983 Fer4_NifH The Fer4_Nif 97.2 0.0016 3.4E-08 42.3 6.4 71 42-135 2-72 (99)
452 TIGR03263 guanyl_kin guanylate 97.2 0.00051 1.1E-08 50.6 4.3 22 41-62 3-24 (180)
453 KOG4181 Uncharacterized conser 97.2 0.0019 4.1E-08 51.8 7.5 24 40-63 189-212 (491)
454 PF13671 AAA_33: AAA domain; P 97.2 0.00031 6.8E-09 49.6 3.0 21 42-62 2-22 (143)
455 cd02036 MinD Bacterial cell di 97.2 0.0017 3.6E-08 47.6 6.8 64 86-164 64-128 (179)
456 PF03205 MobB: Molybdopterin g 97.2 0.00036 7.8E-09 49.4 3.0 23 40-62 1-23 (140)
457 PF13521 AAA_28: AAA domain; P 97.1 0.00027 5.8E-09 51.3 2.2 22 41-62 1-22 (163)
458 PRK14738 gmk guanylate kinase; 97.1 0.0006 1.3E-08 51.5 3.9 24 39-62 13-36 (206)
459 PRK10078 ribose 1,5-bisphospho 97.1 0.00045 9.7E-09 51.4 3.0 22 41-62 4-25 (186)
460 COG1126 GlnQ ABC-type polar am 97.1 0.00051 1.1E-08 51.6 3.2 23 40-62 29-51 (240)
461 cd02042 ParA ParA and ParB of 97.1 0.0019 4.2E-08 43.0 5.8 71 42-133 2-73 (104)
462 cd00820 PEPCK_HprK Phosphoenol 97.1 0.0005 1.1E-08 46.1 2.8 21 40-60 16-36 (107)
463 PRK14530 adenylate kinase; Pro 97.1 0.00058 1.2E-08 52.0 3.5 24 39-62 3-26 (215)
464 PF13238 AAA_18: AAA domain; P 97.1 0.0005 1.1E-08 47.4 2.9 21 42-62 1-21 (129)
465 KOG3347 Predicted nucleotide k 97.0 0.00051 1.1E-08 48.4 2.7 26 37-62 5-30 (176)
466 PRK06217 hypothetical protein; 97.0 0.00057 1.2E-08 50.6 3.2 22 41-62 3-24 (183)
467 TIGR00235 udk uridine kinase. 97.0 0.0006 1.3E-08 51.6 3.3 24 39-62 6-29 (207)
468 TIGR02322 phosphon_PhnN phosph 97.0 0.00054 1.2E-08 50.5 2.9 22 41-62 3-24 (179)
469 COG3839 MalK ABC-type sugar tr 97.0 0.00053 1.2E-08 55.3 3.0 22 41-62 31-52 (338)
470 PRK08233 hypothetical protein; 97.0 0.00075 1.6E-08 49.7 3.5 23 40-62 4-26 (182)
471 COG4525 TauB ABC-type taurine 97.0 0.00062 1.3E-08 50.4 2.8 22 41-62 33-54 (259)
472 smart00382 AAA ATPases associa 97.0 0.00086 1.9E-08 46.5 3.6 23 40-62 3-25 (148)
473 cd03222 ABC_RNaseL_inhibitor T 97.0 0.00064 1.4E-08 50.1 3.0 24 39-62 25-48 (177)
474 PRK10751 molybdopterin-guanine 97.0 0.00083 1.8E-08 49.1 3.5 25 38-62 5-29 (173)
475 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00077 1.7E-08 49.9 3.4 23 39-61 3-25 (188)
476 PF07015 VirC1: VirC1 protein; 97.0 0.0038 8.3E-08 47.6 7.1 98 85-208 84-187 (231)
477 cd01130 VirB11-like_ATPase Typ 97.0 0.00073 1.6E-08 50.2 3.2 24 39-62 25-48 (186)
478 PRK05480 uridine/cytidine kina 97.0 0.00074 1.6E-08 51.1 3.2 25 38-62 5-29 (209)
479 KOG0054 Multidrug resistance-a 97.0 0.0052 1.1E-07 58.0 9.1 23 40-62 548-570 (1381)
480 cd02023 UMPK Uridine monophosp 96.9 0.00067 1.4E-08 50.9 2.9 21 42-62 2-22 (198)
481 COG0541 Ffh Signal recognition 96.9 0.0091 2E-07 49.5 9.5 26 37-62 98-123 (451)
482 PRK03839 putative kinase; Prov 96.9 0.00075 1.6E-08 49.8 3.0 22 41-62 2-23 (180)
483 cd03238 ABC_UvrA The excision 96.9 0.00083 1.8E-08 49.4 3.2 22 40-61 22-43 (176)
484 cd03225 ABC_cobalt_CbiO_domain 96.9 0.00081 1.8E-08 50.9 3.2 23 40-62 28-50 (211)
485 TIGR00960 3a0501s02 Type II (G 96.9 0.00082 1.8E-08 51.1 3.2 23 40-62 30-52 (216)
486 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00085 1.8E-08 51.1 3.2 23 40-62 31-53 (218)
487 cd03261 ABC_Org_Solvent_Resist 96.9 0.00085 1.8E-08 51.7 3.2 23 40-62 27-49 (235)
488 cd03226 ABC_cobalt_CbiO_domain 96.9 0.00087 1.9E-08 50.6 3.2 23 40-62 27-49 (205)
489 COG0552 FtsY Signal recognitio 96.9 0.004 8.7E-08 49.8 6.9 151 38-207 138-327 (340)
490 cd02025 PanK Pantothenate kina 96.9 0.00074 1.6E-08 51.6 2.7 21 42-62 2-22 (220)
491 cd01131 PilT Pilus retraction 96.9 0.00083 1.8E-08 50.5 2.9 22 41-62 3-24 (198)
492 TIGR01166 cbiO cobalt transpor 96.9 0.00098 2.1E-08 49.6 3.2 22 41-62 20-41 (190)
493 TIGR02673 FtsE cell division A 96.9 0.00098 2.1E-08 50.6 3.2 23 40-62 29-51 (214)
494 cd03264 ABC_drug_resistance_li 96.9 0.0009 2E-08 50.7 3.0 22 41-62 27-48 (211)
495 TIGR03608 L_ocin_972_ABC putat 96.9 0.001 2.2E-08 50.2 3.2 23 40-62 25-47 (206)
496 cd03292 ABC_FtsE_transporter F 96.9 0.001 2.2E-08 50.5 3.2 23 40-62 28-50 (214)
497 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.001 2.2E-08 47.3 3.1 23 40-62 27-49 (144)
498 cd03229 ABC_Class3 This class 96.9 0.0011 2.3E-08 48.9 3.3 23 40-62 27-49 (178)
499 cd03265 ABC_DrrA DrrA is the A 96.8 0.001 2.3E-08 50.7 3.3 23 40-62 27-49 (220)
500 COG3638 ABC-type phosphate/pho 96.8 0.00098 2.1E-08 50.7 2.9 22 41-62 32-53 (258)
No 1
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=182.97 Aligned_cols=194 Identities=40% Similarity=0.644 Sum_probs=168.0
Q ss_pred cceeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757 20 KEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~ 99 (219)
.+++|+.++...+++|....+-|+++|.+|+|||||+|+|+++...+.++.+||.|+.+.++..++.+.++|.||++...
T Consensus 5 ~~~~f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAk 84 (200)
T COG0218 5 HKAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAK 84 (200)
T ss_pred cccEEEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCccccc
Confidence 57889999999999999999999999999999999999999987889999999999999999999999999999999988
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ 179 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 179 (219)
-....++.|..+...|+..++...++++++|+..+....+.+..+|+...++|+++|+||+|..+..+. ...+....
T Consensus 85 v~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~---~k~l~~v~ 161 (200)
T COG0218 85 VPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER---NKQLNKVA 161 (200)
T ss_pred CCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH---HHHHHHHH
Confidence 888889999999999999999999999999999999999999999999999999999999999875311 11122333
Q ss_pred HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+.+.........++.+|+..+.|++++...|.+....
T Consensus 162 ~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 162 EELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 3333333332238999999999999999999887654
No 2
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.96 E-value=4.6e-28 Score=179.58 Aligned_cols=179 Identities=45% Similarity=0.745 Sum_probs=139.7
Q ss_pred eeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCC
Q 027757 22 VEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101 (219)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~ 101 (219)
++|+.++....+.+....++|+|+|.+|+|||||+|+|++..+...+++.+++|..+..+..+..+.++||||+......
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~ 80 (179)
T TIGR03598 1 AEFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVS 80 (179)
T ss_pred CEEEeeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCC
Confidence 36888888899999999999999999999999999999997556777888888887776666678999999998655444
Q ss_pred cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHH
Q 027757 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL 181 (219)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 181 (219)
......|..+...|++....+|++++|+|++++.+..+.....++...++|+++|+||+|+...... ....+++.+.
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~i~~~ 157 (179)
T TIGR03598 81 KEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSEL---NKQLKKIKKA 157 (179)
T ss_pred hhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHH---HHHHHHHHHH
Confidence 4455667777778888766679999999999887777777677777788999999999998754211 1223334444
Q ss_pred HHhcCCCCCCeEEeecCCCCChH
Q 027757 182 IRENYPHHPPWIMTSSVTGLGRD 204 (219)
Q Consensus 182 ~~~~~~~~~~~~~~Sa~~~~~v~ 204 (219)
+... ....+++++||++|.|++
T Consensus 158 l~~~-~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 158 LKKD-ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred Hhhc-cCCCceEEEECCCCCCCC
Confidence 4432 233589999999999974
No 3
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.96 E-value=3e-27 Score=177.58 Aligned_cols=191 Identities=42% Similarity=0.676 Sum_probs=148.7
Q ss_pred cceeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757 20 KEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~ 99 (219)
-++++..+....++.+....++|+++|.+|+|||||+|+|++..+...+.+.+++|..+..+..+.++.+|||||+....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~ 84 (196)
T PRK00454 5 HNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAK 84 (196)
T ss_pred hHHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcC
Confidence 35566667767777778889999999999999999999999976677888888888877766666789999999987666
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ 179 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 179 (219)
.....+..+..+...+++....++++++|+|++.+.+..+.....++...++|+++++||+|+......+ ...+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~---~~~~~i~ 161 (196)
T PRK00454 85 VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERK---KQLKKVR 161 (196)
T ss_pred CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHH---HHHHHHH
Confidence 6666677788888888888777789999999988776665566677777889999999999987642211 1111222
Q ss_pred HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+.+... ..+++++||+++.|+++++++|.++++.
T Consensus 162 ~~l~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 162 KALKFG---DDEVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHhc---CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 222221 3689999999999999999999988763
No 4
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.5e-26 Score=165.11 Aligned_cols=159 Identities=18% Similarity=0.263 Sum_probs=131.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...+||+|+|++|+|||+|+.+|....+...+..+.|+...+..+..++ ++.+|||. ||++|+.+..
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTA----------GQERFrtit~ 76 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTA----------GQERFRTITS 76 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecc----------ccHHHhhhhH
Confidence 4578999999999999999999999988888899999888776666655 45666665 4899999999
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
.|||+ |++||+|+|+++..++... ..|+.+ .++|.++|+||||+.+. +.+..++.+++...+..
T Consensus 77 syYR~---ahGii~vyDiT~~~SF~~v--~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~--~~v~~~~a~~fa~~~~~--- 146 (205)
T KOG0084|consen 77 SYYRG---AHGIIFVYDITKQESFNNV--KRWIQEIDRYASENVPKLLVGNKCDLTEK--RVVSTEEAQEFADELGI--- 146 (205)
T ss_pred hhccC---CCeEEEEEEcccHHHhhhH--HHHHHHhhhhccCCCCeEEEeeccccHhh--eecCHHHHHHHHHhcCC---
Confidence 99999 9999999999998888654 456664 67899999999999876 55666667777766553
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++++++||++..|+++.|..+...++..
T Consensus 147 --~~f~ETSAK~~~NVe~~F~~la~~lk~~ 174 (205)
T KOG0084|consen 147 --PIFLETSAKDSTNVEDAFLTLAKELKQR 174 (205)
T ss_pred --cceeecccCCccCHHHHHHHHHHHHHHh
Confidence 2399999999999999999998877654
No 5
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=7.2e-25 Score=164.81 Aligned_cols=156 Identities=20% Similarity=0.216 Sum_probs=114.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+.|+++|..|+|||||+++|....+...+.++.+..........++ .+.+|||+| ++.|..++..|+
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG----------qe~~~~l~~~y~ 70 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAG----------QERFNSITSAYY 70 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCC----------chhhHHHHHHHh
Confidence 3689999999999999999998766666666666554433344433 578899987 456788889999
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHH-HHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDC-ANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
++ +|++|+|+|++++.++..... ...+. ..+.|+++|+||+|+... +++...+.+++.+... ...+
T Consensus 71 ~~---ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~--~~v~~~~~~~~a~~~~-----~~~~ 140 (202)
T cd04120 71 RS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD--REISRQQGEKFAQQIT-----GMRF 140 (202)
T ss_pred cC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc--cccCHHHHHHHHHhcC-----CCEE
Confidence 98 999999999999888765421 11121 257899999999998653 3343444444433321 1579
Q ss_pred EEeecCCCCChHHHHHHHHHHHh
Q 027757 193 IMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++||++|.|++++|+++.+.+.
T Consensus 141 ~etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 141 CEASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred EEecCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999987654
No 6
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.6e-26 Score=161.74 Aligned_cols=154 Identities=21% Similarity=0.272 Sum_probs=122.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
...||+++|..++|||||+-+|....|.....++.|.......+..+. ++.+|||.| |++|+++.++
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG----------QERy~slapM 73 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG----------QERYHSLAPM 73 (200)
T ss_pred ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCC----------cccccccccc
Confidence 468999999999999999999999877777677777555444444444 566777765 7889999999
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
|||+ +++.|+|+|+++..++.. ...|+++ .++-+.+|+||+|+... +++..++...+.+..+
T Consensus 74 YyRg---A~AAivvYDit~~~SF~~--aK~WvkeL~~~~~~~~vialvGNK~DL~~~--R~V~~~ea~~yAe~~g----- 141 (200)
T KOG0092|consen 74 YYRG---ANAAIVVYDITDEESFEK--AKNWVKELQRQASPNIVIALVGNKADLLER--REVEFEEAQAYAESQG----- 141 (200)
T ss_pred eecC---CcEEEEEEecccHHHHHH--HHHHHHHHHhhCCCCeEEEEecchhhhhhc--ccccHHHHHHHHHhcC-----
Confidence 9999 999999999999888754 4566664 45667779999999874 5566666777666543
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
..++++||+++.|++++|..|.+.+
T Consensus 142 -ll~~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 142 -LLFFETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred -CEEEEEecccccCHHHHHHHHHHhc
Confidence 6899999999999999999998754
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.93 E-value=1.3e-24 Score=161.95 Aligned_cols=155 Identities=14% Similarity=0.215 Sum_probs=115.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..+||+++|..|+|||||+.+|....+...+.+..+..........++ .+.+|||+| +..|..++..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G----------~~~~~~l~~~ 74 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSG----------QGRFCTIFRS 74 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCC----------cHHHHHHHHH
Confidence 468999999999999999999998766555555555444333333333 577899987 3556788888
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+++. +|++|+|+|++++.++.... .|+.+ .+.|+++|+||+|+... +.+..++.+++.+..+
T Consensus 75 ~~~~---ad~illVfD~t~~~Sf~~~~--~w~~~i~~~~~~~piilVGNK~DL~~~--~~v~~~~~~~~a~~~~------ 141 (189)
T cd04121 75 YSRG---AQGIILVYDITNRWSFDGID--RWIKEIDEHAPGVPKILVGNRLHLAFK--RQVATEQAQAYAERNG------ 141 (189)
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccchhc--cCCCHHHHHHHHHHcC------
Confidence 8887 99999999999988876642 33332 57899999999999653 3344455555554322
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+++++||++|.|++++|+++.+.+.
T Consensus 142 ~~~~e~SAk~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 142 MTFFEVSPLCNFNITESFTELARIVL 167 (189)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999987554
No 8
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=1.7e-25 Score=159.63 Aligned_cols=153 Identities=27% Similarity=0.307 Sum_probs=110.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
++|+++|.||+|||||+|+|+|.. ..+.+.+|+|.+...... +..+.++|+||+........ -+.+...++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~----ee~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE----EERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH----HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc----HHHHHHHHH
Confidence 479999999999999999999984 778999999887654333 35899999999633221111 134445555
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
.. ...|++|+|+|+++. ..++.+..++.+.++|+++|+||+|+........ +.+.+.+.++ +|++++|
T Consensus 75 ~~-~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~i---d~~~Ls~~Lg------~pvi~~s 142 (156)
T PF02421_consen 75 LS-EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEI---DAEKLSERLG------VPVIPVS 142 (156)
T ss_dssp HH-TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE----HHHHHHHHT------S-EEEEB
T ss_pred hh-cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEE---CHHHHHHHhC------CCEEEEE
Confidence 43 337999999999974 3446777888889999999999999887654333 3455555554 7999999
Q ss_pred cCCCCChHHHHHHH
Q 027757 197 SVTGLGRDELLLHM 210 (219)
Q Consensus 197 a~~~~~v~el~~~l 210 (219)
|+++.|++++++.|
T Consensus 143 a~~~~g~~~L~~~I 156 (156)
T PF02421_consen 143 ARTGEGIDELKDAI 156 (156)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred eCCCcCHHHHHhhC
Confidence 99999999999865
No 9
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=166.66 Aligned_cols=162 Identities=26% Similarity=0.271 Sum_probs=128.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
--|+|+|.||+|||||+|+++|. ..+.+++.+.||+.. +.+. .+.+++++||||+.... ....+.+.+...
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk-----~~l~~~m~~~a~ 80 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK-----HALGELMNKAAR 80 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc-----hHHHHHHHHHHH
Confidence 35899999999999999999998 699999999999864 2222 35689999999987552 222355666777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
.....+|+++||+|+.++....+..++..++..+.|+++++||+|..... ..+..+.+.+.....- ..++++|
T Consensus 81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~------~~l~~~~~~~~~~~~f-~~ivpiS 153 (298)
T COG1159 81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK------TVLLKLIAFLKKLLPF-KEIVPIS 153 (298)
T ss_pred HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH------HHHHHHHHHHHhhCCc-ceEEEee
Confidence 77777999999999999888888888888888778999999999988752 2234555555444333 4899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 027757 197 SVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 197 a~~~~~v~el~~~l~~~~ 214 (219)
|+.|.|++.|.+.+...+
T Consensus 154 A~~g~n~~~L~~~i~~~L 171 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYL 171 (298)
T ss_pred ccccCCHHHHHHHHHHhC
Confidence 999999999999988754
No 10
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.93 E-value=2.5e-24 Score=158.51 Aligned_cols=156 Identities=14% Similarity=0.158 Sum_probs=112.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|.+|+|||||++++.+..+...+.++.+..... ....++ .+.+|||||. ..|+.++..+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~----------~~~~~l~~~~ 70 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQ-QARIDNEPALLDILDTAGQ----------AEFTAMRDQY 70 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEE-EEEECCEEEEEEEEeCCCc----------hhhHHHhHHH
Confidence 3699999999999999999999876655555555432221 222222 5788999883 3467788888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++|+|+|++++.++.... ...++. ..++|+++|+||+|+... +.+..++...+.+..+ +
T Consensus 71 ~~~---~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~a~~~~------~ 139 (172)
T cd04141 71 MRC---GEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ--RQVTTEEGRNLAREFN------C 139 (172)
T ss_pred hhc---CCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc--CccCHHHHHHHHHHhC------C
Confidence 887 89999999999988876643 112222 257999999999998654 3333444444443322 6
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+++++||+++.|++++|+++.+.+..
T Consensus 140 ~~~e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 140 PFFETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999876543
No 11
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.93 E-value=4e-24 Score=156.54 Aligned_cols=153 Identities=22% Similarity=0.270 Sum_probs=111.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|++|+|||||++++.+..+.....++.+..........++ .+.+||||| ++.+..+...+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~~ 71 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG----------QERFRAVTRSY 71 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCC----------cHHHHHHHHHH
Confidence 47999999999999999999998866665555555444333333333 578999998 34556777888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
++. +|++|+|+|++++.++... ..|+. ..+.|+++|+||+|+... +....++..++.+.. .
T Consensus 72 ~~~---~~~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~--~~~~~~~~~~~~~~~------~ 138 (166)
T cd04122 72 YRG---AAGALMVYDITRRSTYNHL--SSWLTDARNLTNPNTVIFLIGNKADLEAQ--RDVTYEEAKQFADEN------G 138 (166)
T ss_pred hcC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccc--cCcCHHHHHHHHHHc------C
Confidence 877 8999999999997766543 33333 256899999999999754 223334444444332 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.+++++||++|.|++++|.++.+.+
T Consensus 139 ~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 139 LLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999988654
No 12
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.93 E-value=6.1e-24 Score=155.71 Aligned_cols=154 Identities=18% Similarity=0.252 Sum_probs=112.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|++|+|||||++++++..+...+.++.+.+........++ .+.++||||. +.+......+
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~~~~ 72 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ----------ERFRTITTAY 72 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCch----------HHHHHHHHHH
Confidence 57999999999999999999999877666677766555443333333 5789999983 3455666777
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
++. +|++|+|+|++++.++... ..|+. ..+.|+++|+||+|+... .....++..++.+...
T Consensus 73 ~~~---ad~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~------ 139 (167)
T cd01867 73 YRG---AMGIILVYDITDEKSFENI--RNWMRNIEEHASEDVERMLVGNKCDMEEK--RVVSKEEGEALADEYG------ 139 (167)
T ss_pred hCC---CCEEEEEEECcCHHHHHhH--HHHHHHHHHhCCCCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC------
Confidence 776 8999999999987765443 23332 256899999999999753 2223333444433322
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+++++||+++.|++++|+++.+.+.
T Consensus 140 ~~~~~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 140 IKFLETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999988764
No 13
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=4e-24 Score=161.28 Aligned_cols=157 Identities=19% Similarity=0.238 Sum_probs=112.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-C---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-K---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
+||+++|++|+|||||+++|++..+...+.++.+.......+..+ + .+.+|||||. +.|..++..+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~----------~~~~~~~~~~ 70 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ----------ERFGGMTRVY 70 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCc----------hhhhhhHHHH
Confidence 589999999999999999999976555556655544433333333 2 5789999984 4456777888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHH-HHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCA-NWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~-~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
++. +|++|+|+|++++.+......+ ..+. ..++|+++|+||+|+.+. ..+..++..++.+..+
T Consensus 71 ~~~---a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~---- 141 (201)
T cd04107 71 YRG---AVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--LAKDGEQMDQFCKENG---- 141 (201)
T ss_pred hCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--cccCHHHHHHHHHHcC----
Confidence 888 8999999999998776543211 1111 257899999999999742 2233444555544322
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
..+++++||+++.|++++|++|.+.+-.
T Consensus 142 -~~~~~e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 142 -FIGWFETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred -CceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1479999999999999999999886543
No 14
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.93 E-value=5.6e-24 Score=157.67 Aligned_cols=155 Identities=21% Similarity=0.278 Sum_probs=113.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-------------cCeEEEEeCCCCCCCCCCcch
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-------------NKSWYIVDLPGYGFAKAPDVT 104 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-------------~~~~~liDtpg~~~~~~~~~~ 104 (219)
..+||+++|++|+|||||++++.+..+...+.++.+.+........ ...+.+|||||
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G---------- 72 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG---------- 72 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC----------
Confidence 3589999999999999999999998776666666654443222221 12577899988
Q ss_pred hhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHH
Q 027757 105 RMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKS 177 (219)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~ 177 (219)
++.|..+...+++. +|++|+|+|++++.+..+. ..|+. ..+.|+++|+||+|+.+. ..+..+...+
T Consensus 73 ~~~~~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--~~v~~~~~~~ 145 (180)
T cd04127 73 QERFRSLTTAFFRD---AMGFLLIFDLTNEQSFLNV--RNWMSQLQTHAYCENPDIVLCGNKADLEDQ--RQVSEEQAKA 145 (180)
T ss_pred hHHHHHHHHHHhCC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhcCCCCCcEEEEEeCccchhc--CccCHHHHHH
Confidence 45677888888887 8999999999987766553 23332 246899999999998754 2233344444
Q ss_pred HHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 178 FQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+.+..+ ++++++||+++.|+++++++|.+.+-
T Consensus 146 ~~~~~~------~~~~e~Sak~~~~v~~l~~~l~~~~~ 177 (180)
T cd04127 146 LADKYG------IPYFETSAATGTNVEKAVERLLDLVM 177 (180)
T ss_pred HHHHcC------CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 444432 58999999999999999999987553
No 15
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=5.6e-24 Score=155.56 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=109.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|++|+|||||++++.+..+.....++.+..........++ .+.++|||| ++.|..+...+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~~~ 72 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAG----------QERFRTITQSY 72 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCC----------hHHHHHHHHHH
Confidence 57999999999999999999998765555555555444444444443 678999999 33456677777
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHH---HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CAN---WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~---~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
++. +|++++|+|++++.+..... .+. .....+.|+++|+||+|+.... +...+...++.+... . ..
T Consensus 73 ~~~---~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~----~-~~ 142 (165)
T cd01864 73 YRS---ANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR--EVLFEEACTLAEKNG----M-LA 142 (165)
T ss_pred hcc---CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc--ccCHHHHHHHHHHcC----C-cE
Confidence 777 89999999999987654421 111 1223578999999999987542 222233334333322 1 46
Q ss_pred eEEeecCCCCChHHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
++++||++|.|++++++++.+.
T Consensus 143 ~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 143 VLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999864
No 16
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.93 E-value=6.6e-24 Score=155.24 Aligned_cols=153 Identities=16% Similarity=0.243 Sum_probs=109.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||+++|.+..+...+.++.+..........+ ..+.+|||||. ..|..++..++
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~----------~~~~~~~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ----------ERYRTITTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh----------HHHHHHHHHHc
Confidence 689999999999999999999986655556655544433333332 25889999983 34566777777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
+. +|++++|+|++++.+... +..|+.. ...|+++|+||+|+.+.. ....+...++.+.+ + .
T Consensus 72 ~~---~~~~l~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~----~--~ 138 (165)
T cd01865 72 RG---AMGFILMYDITNEESFNA--VQDWSTQIKTYSWDNAQVILVGNKCDMEDER--VVSSERGRQLADQL----G--F 138 (165)
T ss_pred cC---CcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCCEEEEEECcccCccc--ccCHHHHHHHHHHc----C--C
Confidence 77 899999999998765543 2333332 468999999999997542 22233333333322 2 4
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++++||+++.|++++++++.+.+-
T Consensus 139 ~~~~~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 139 EFFEASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999987653
No 17
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.92 E-value=3.1e-24 Score=159.11 Aligned_cols=157 Identities=14% Similarity=0.154 Sum_probs=115.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...+||+++|.+|+|||||+++|....+...+.++.+..... ....++ .+.+|||+| ++.|..+..
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~-~~~~~~~~~~l~iwDtaG----------~e~~~~~~~ 71 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSG----------SPYYDNVRP 71 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEE-EEEECCEEEEEEEEECCC----------chhhHhhhh
Confidence 446799999999999999999999987766666666543322 222333 578888887 456677888
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEccccccc----------ccCCCchHhHHHH
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKV----------AKGRRPDENIKSF 178 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~----------~~~~~~~~~~~~~ 178 (219)
.+++. +|++|+|+|++++.++.... ..|+.. .+.|+++|+||+|+.+. ..+.+..++.+++
T Consensus 72 ~~~~~---ad~~ilvyDit~~~Sf~~~~-~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~ 147 (182)
T cd04172 72 LSYPD---SDAVLICFDISRPETLDSVL-KKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANM 147 (182)
T ss_pred hhcCC---CCEEEEEEECCCHHHHHHHH-HHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHH
Confidence 88888 89999999999987775431 233322 47899999999998642 2234555666666
Q ss_pred HHHHHhcCCCCCCeEEeecCCCCC-hHHHHHHHHHH
Q 027757 179 QQLIRENYPHHPPWIMTSSVTGLG-RDELLLHMSQL 213 (219)
Q Consensus 179 ~~~~~~~~~~~~~~~~~Sa~~~~~-v~el~~~l~~~ 213 (219)
.+..+. ++++++||+++.| ++++|..+.+.
T Consensus 148 a~~~~~-----~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 148 AKQIGA-----ATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHcCC-----CEEEECCcCCCCCCHHHHHHHHHHH
Confidence 655441 3799999999998 99999998875
No 18
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.92 E-value=8e-25 Score=155.43 Aligned_cols=164 Identities=18% Similarity=0.175 Sum_probs=127.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...+||+|+|++|+|||||+|+++.++|...+--+.|...-...+.++.+.+.+ ..|+++||++|.++.-.+|
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtl-------QiWDTAGQERFqsLg~aFY 79 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTL-------QIWDTAGQERFQSLGVAFY 79 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEE-------EEEecccHHHhhhccccee
Confidence 557899999999999999999999988777776666644433344444432211 3455556899999999999
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-----HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-----CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
|+ +|.|++++|+.++.++..++ ++.+... ..-|+++++||+|+.....+.+.......|....+.
T Consensus 80 Rg---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn---- 152 (210)
T KOG0394|consen 80 RG---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN---- 152 (210)
T ss_pred cC---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC----
Confidence 99 99999999999988887753 3333332 456999999999998877777777777777776543
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+|||++|||...|+.+.|+.+.+.+-
T Consensus 153 -ipyfEtSAK~~~NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 153 -IPYFETSAKEATNVDEAFEEIARRAL 178 (210)
T ss_pred -ceeEEecccccccHHHHHHHHHHHHH
Confidence 89999999999999999999987553
No 19
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.92 E-value=3e-24 Score=160.69 Aligned_cols=157 Identities=14% Similarity=0.139 Sum_probs=111.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|..|+|||||+.+|....+...+.++.+..... ....++ .+.+|||+| ++.|+.++..|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G----------~e~~~~l~~~~ 71 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA-QTAVDGRTVSLNLWDTAG----------QEEYDRLRTLS 71 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE-EEEECCEEEEEEEEECCC----------chhhhhhhhhh
Confidence 4799999999999999999999886666666665533321 122233 577888887 46677888889
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEccccccccc----------CCCchHhHHHHHH
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQ 180 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~ 180 (219)
++. +|++|+|+|++++.++.... ..|.. ..+.|+++|+||+|+.+... ..+..++.+++.+
T Consensus 72 ~~~---a~~~ilvydit~~~Sf~~~~-~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 147 (191)
T cd01875 72 YPQ---TNVFIICFSIASPSSYENVR-HKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK 147 (191)
T ss_pred ccC---CCEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 888 99999999999988765532 12322 25799999999999965321 1122233333333
Q ss_pred HHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 181 ~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..+ ..+++++||++|.|++++|+++.+.+.
T Consensus 148 ~~~-----~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 148 QIH-----AVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred HcC-----CcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 222 147999999999999999999987653
No 20
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=4.8e-24 Score=155.43 Aligned_cols=162 Identities=17% Similarity=0.218 Sum_probs=128.9
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
+....+||+++|.+|+|||+++-+|....+...+..+.|..........++. -+..+.|++.||++|..+...
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~-------~i~lQiWDtaGQerf~ti~~s 80 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGK-------KIKLQIWDTAGQERFRTITTA 80 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCe-------EEEEEEEEcccchhHHHHHHH
Confidence 3456789999999999999999999998776666666666655554444431 012244445568999999999
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
|+++ |+++++|+|+++..++.+. ..|++. ..+|.++|+||+|+.. .+++..+.-+.+.+.++
T Consensus 81 Yyrg---A~gi~LvyDitne~Sfeni--~~W~~~I~e~a~~~v~~~LvGNK~D~~~--~R~V~~e~ge~lA~e~G----- 148 (207)
T KOG0078|consen 81 YYRG---AMGILLVYDITNEKSFENI--RNWIKNIDEHASDDVVKILVGNKCDLEE--KRQVSKERGEALAREYG----- 148 (207)
T ss_pred HHhh---cCeeEEEEEccchHHHHHH--HHHHHHHHhhCCCCCcEEEeeccccccc--cccccHHHHHHHHHHhC-----
Confidence 9999 9999999999998888664 335552 5899999999999988 47788888888888876
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+++++||+++.|++|.|..|.+....
T Consensus 149 -~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 149 -IKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred -CeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 699999999999999999999886653
No 21
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.92 E-value=5.7e-24 Score=155.38 Aligned_cols=169 Identities=47% Similarity=0.744 Sum_probs=130.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (219)
.|+++|.+|+|||||+|.+++........+..+++.....+..+..+.++||||+.....+...+..+......|+....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 48999999999999999999655677788888887777666667799999999987655555566777777788888777
Q ss_pred CccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCC
Q 027757 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTG 200 (219)
Q Consensus 121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 200 (219)
.++++++++|..+..+.....+.+++...+.|+++|+||+|+....... .........+.. ....++++++|++++
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~---~~~~~~~~~l~~-~~~~~~~~~~Sa~~~ 156 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELA---KALKEIKKELKL-FEIDPPIILFSSLKG 156 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHH---HHHHHHHHHHHh-ccCCCceEEEecCCC
Confidence 7889999999998766666677888888889999999999986532111 111222222221 223468999999999
Q ss_pred CChHHHHHHHHHH
Q 027757 201 LGRDELLLHMSQL 213 (219)
Q Consensus 201 ~~v~el~~~l~~~ 213 (219)
.|+++++++|.+.
T Consensus 157 ~~~~~l~~~l~~~ 169 (170)
T cd01876 157 QGIDELRALIEKW 169 (170)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
No 22
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.92 E-value=5.1e-24 Score=155.57 Aligned_cols=155 Identities=18% Similarity=0.232 Sum_probs=108.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|.+|+|||||+++++...+...+.++.+..... ....++ .+.+|||||. +.|..++..+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~ 69 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-QVEVDGQQCMLEILDTAGT----------EQFTAMRDLY 69 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEE-EEEECCEEEEEEEEECCCc----------ccchhHHHHH
Confidence 3689999999999999999999765555455554433322 222332 4678999984 3457788888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++++|+|+++..+..... ....+ ...+.|+++|+||+|+..... ......+++.+.+. .
T Consensus 70 ~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~------~ 138 (164)
T cd04175 70 MKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV--VGKEQGQNLARQWG------C 138 (164)
T ss_pred Hhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccE--EcHHHHHHHHHHhC------C
Confidence 888 89999999998876654421 11222 236799999999999975421 22233333333322 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++++||+++.|+++++.++.+.+.
T Consensus 139 ~~~~~Sa~~~~~v~~~~~~l~~~l~ 163 (164)
T cd04175 139 AFLETSAKAKINVNEIFYDLVRQIN 163 (164)
T ss_pred EEEEeeCCCCCCHHHHHHHHHHHhh
Confidence 8999999999999999999987653
No 23
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.92 E-value=9.5e-24 Score=154.45 Aligned_cols=154 Identities=18% Similarity=0.269 Sum_probs=110.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|++|+|||||++++.+..+...+.++.+.+........++ .+.+|||||. +.|..+...+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~ 71 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ----------ERFRTITSSY 71 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc----------HhHHHHHHHH
Confidence 36999999999999999999998765555555555444333333333 5789999993 3456677777
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
++. +|++|+|+|++++.+.... ..|+.. .+.|+++|+||+|+.... .+..++...+.+.. .
T Consensus 72 ~~~---~~~ii~v~d~~~~~s~~~l--~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~------~ 138 (166)
T cd01869 72 YRG---AHGIIIVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDLTDKR--VVDYSEAQEFADEL------G 138 (166)
T ss_pred hCc---CCEEEEEEECcCHHHHHhH--HHHHHHHHHhCCCCCcEEEEEEChhccccc--CCCHHHHHHHHHHc------C
Confidence 777 8999999999987665443 233332 468999999999986542 23233344444332 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+++++||++|.|++++++++.+.+.
T Consensus 139 ~~~~~~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 139 IPFLETSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CeEEEEECCCCcCHHHHHHHHHHHHH
Confidence 68999999999999999999988764
No 24
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.92 E-value=1.2e-23 Score=165.33 Aligned_cols=160 Identities=20% Similarity=0.114 Sum_probs=111.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EE-EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HF-LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~-~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
+|+++|.+|+|||||+|+|++. ....+++.+++|+... .. ..+.++.++||||+...... ....+......
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~-----l~~~~~~~~~~ 75 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHS-----LNRLMMKEARS 75 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcch-----HHHHHHHHHHH
Confidence 6899999999999999999997 4667788888877532 11 22447999999997643111 11222222222
Q ss_pred ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 197 (219)
..+.+|++++|+|+++..+.. ..+...+...+.|+++|+||+|+... .........+..... ..+++++||
T Consensus 76 ~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~-------~~~~~~~~~~~~~~~-~~~v~~iSA 146 (270)
T TIGR00436 76 AIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFK-------DKLLPLIDKYAILED-FKDIVPISA 146 (270)
T ss_pred HHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCH-------HHHHHHHHHHHhhcC-CCceEEEec
Confidence 333489999999999876553 44556666778999999999998643 122223333332222 237999999
Q ss_pred CCCCChHHHHHHHHHHHh
Q 027757 198 VTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 198 ~~~~~v~el~~~l~~~~~ 215 (219)
++|.|++++++++.+.+.
T Consensus 147 ~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 147 LTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987653
No 25
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.92 E-value=1.2e-23 Score=153.74 Aligned_cols=152 Identities=20% Similarity=0.249 Sum_probs=108.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||+++|++..+...+.++.+.+........+ ..+.+|||||. ..+..+...++
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~ 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH----------PEYLEVRNEFY 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCcc----------HHHHHHHHHHh
Confidence 489999999999999999999987666666666544433333332 36789999994 33456777777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhc-------c----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG-------R----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
+. +|++|+|+|++++.+.... ..|+. . .+.|+++|+||+|+... .....++...+....
T Consensus 71 ~~---~d~~ilv~D~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~--- 140 (168)
T cd04119 71 KD---TQGVLLVYDVTDRQSFEAL--DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH--RAVSEDEGRLWAESK--- 140 (168)
T ss_pred cc---CCEEEEEEECCCHHHHHhH--HHHHHHHHHhccccccCCCceEEEEEEchhcccc--cccCHHHHHHHHHHc---
Confidence 77 8999999999987665432 22222 1 46899999999998642 222233333333322
Q ss_pred CCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 186 YPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+ .+++++||+++.|+++++++|.+.+
T Consensus 141 -~--~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 141 -G--FKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred -C--CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 1 5799999999999999999998754
No 26
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.92 E-value=1.2e-23 Score=154.54 Aligned_cols=155 Identities=17% Similarity=0.217 Sum_probs=110.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
||+++|.+|+|||||++++++..+...+.++.+..........++ .+.+|||||. +.|..+...+++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ----------ERFKCIASTYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh----------HHHHhhHHHHhc
Confidence 799999999999999999999877767767666554433333333 6889999983 456677788888
Q ss_pred ccCCccEEEEEEeCCCCCCcccHHHHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLDCANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
. +|++++|+|+++..+.... ..|+. ..+.|+++|+||+|+.+........+....+.+.+ + .
T Consensus 72 ~---ad~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~----~--~ 140 (170)
T cd04108 72 G---AQAIIIVFDLTDVASLEHT--RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM----Q--A 140 (170)
T ss_pred C---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHc----C--C
Confidence 7 9999999999886555432 23332 13467999999999865432222222233333322 2 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+++++||++|.|++++|+.+.+.+.+
T Consensus 141 ~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 141 EYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999887643
No 27
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.92 E-value=1.1e-23 Score=153.10 Aligned_cols=152 Identities=18% Similarity=0.250 Sum_probs=105.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||+++|++..+.....++.+.... .....++ .+.+|||||. +.|..++..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~----------~~~~~l~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQ----------EEYSAMRDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEE-EEEEECCEEEEEEEEECCCC----------cchHHHHHHHH
Confidence 68999999999999999999987655555554443322 2222232 3667999984 34567788888
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+. +|++++|+|+++..+..+.. +.++....+.|+++|+||+|+... ........++.+.++ .+
T Consensus 71 ~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~---~~~~~~~~~~~~~~~------~~ 138 (162)
T cd04138 71 RT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR---TVSSRQGQDLAKSYG------IP 138 (162)
T ss_pred hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc---eecHHHHHHHHHHhC------Ce
Confidence 87 89999999999866554421 111222357899999999998752 122233333333322 58
Q ss_pred eEEeecCCCCChHHHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++++||++|.|++++++++.+.+
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 139 YIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998653
No 28
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.92 E-value=4.3e-24 Score=157.43 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=112.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|.+|+|||||+.+++...+...+.++.+...... ...++ ++.+|||+|. +.|..+...++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~-~~~~~~~v~l~i~Dt~G~----------~~~~~~~~~~~ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VSVDGNTVNLGLWDTAGQ----------EDYNRLRPLSY 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEE-EEECCEEEEEEEEECCCC----------ccccccchhhc
Confidence 5899999999999999999999877666666665443322 22232 6789999884 34566677788
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEccccccccc--------CCCchHhHHHHHHHHH
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAK--------GRRPDENIKSFQQLIR 183 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~ 183 (219)
+. +|++|+|+|++++.++.... ..|+. ..+.|+++|+||+|+.+... +.+..++..++.+..+
T Consensus 71 ~~---a~~~ilvyd~~~~~Sf~~~~-~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 146 (176)
T cd04133 71 RG---ADVFVLAFSLISRASYENVL-KKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG 146 (176)
T ss_pred CC---CcEEEEEEEcCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC
Confidence 87 89999999999988876531 12333 25799999999999965321 2244444555544332
Q ss_pred hcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
. .+++++||++|.|++++|+.+.+.+
T Consensus 147 ----~-~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 147 ----A-AAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ----C-CEEEECCCCcccCHHHHHHHHHHHH
Confidence 1 2699999999999999999998865
No 29
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.92 E-value=1e-23 Score=153.85 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=106.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
.||+++|++|+|||||+++|++..+.....++...... .....++ .+.+|||||.. .|..+...++
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~----------~~~~~~~~~~ 69 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYR-KQIEIDGEVCLLDILDTAGQE----------EFSAMRDQYM 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEE-EEEEECCEEEEEEEEECCCcc----------cchHHHHHHH
Confidence 48999999999999999999987655444444332222 1222222 56789999842 3456677777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHH-HHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDC-ANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+. +|++++|+|++++.+...... ..++ ...+.|+++|+||+|+.+.. ....+....+.+..+ .+
T Consensus 70 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~--~~~~~~~~~~~~~~~------~~ 138 (164)
T smart00173 70 RT---GEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER--VVSTEEGKELARQWG------CP 138 (164)
T ss_pred hh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--eEcHHHHHHHHHHcC------CE
Confidence 77 899999999998766544311 1122 22578999999999987532 122233333333322 68
Q ss_pred eEEeecCCCCChHHHHHHHHHHHhh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++||+++.|+++++++|.+.+..
T Consensus 139 ~~~~Sa~~~~~i~~l~~~l~~~~~~ 163 (164)
T smart00173 139 FLETSAKERVNVDEAFYDLVREIRK 163 (164)
T ss_pred EEEeecCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999887653
No 30
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.92 E-value=5.8e-24 Score=156.98 Aligned_cols=156 Identities=12% Similarity=0.106 Sum_probs=108.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|.+|+|||||+++|....+...+.++.+...... ...++ .+.+|||+|. +.|..++..++
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~-~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~ 70 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQ----------EDYDRLRPLSY 70 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEE-EEECCEEEEEEEEECCCc----------cchhhhhhhhc
Confidence 5899999999999999999998766566666655333222 22222 5779999984 33455667777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEccccccccc----------CCCchHhHHHHHHHH
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQLI 182 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~ 182 (219)
+. +|++|+|+|++++.++.... ....+. ..+.|+++|+||+|+..... +.+..++.+++.+..
T Consensus 71 ~~---a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 71 PQ---TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred cc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence 77 89999999999987765432 122222 24789999999999865321 223333333333322
Q ss_pred HhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+ ...++++||++|.|++++|+.+.+.+
T Consensus 148 ~-----~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 148 K-----AVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred C-----CcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 2 15799999999999999999988743
No 31
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.92 E-value=9.6e-24 Score=154.37 Aligned_cols=153 Identities=17% Similarity=0.174 Sum_probs=105.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||++++++..+...+.++.+.+... .... ...+.++||||.. .|..+...++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISCSKNICTLQITDTTGSH----------QFPAMQRLSI 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEE-EEEECCEEEEEEEEECCCCC----------cchHHHHHHh
Confidence 689999999999999999999886655555544433321 1111 2357899999953 2345556666
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-HHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+. +|++|+|+|++++.+..... ...++.. .++|+++|+||+|+... +++.......+... . .
T Consensus 71 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~----~--~ 139 (165)
T cd04140 71 SK---GHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNEGAACATE----W--N 139 (165)
T ss_pred hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHHHHHHHHH----h--C
Confidence 66 89999999999887765432 2222322 56899999999998653 22222222222222 1 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++++++||++|.|++++|++|.+..
T Consensus 140 ~~~~e~SA~~g~~v~~~f~~l~~~~ 164 (165)
T cd04140 140 CAFMETSAKTNHNVQELFQELLNLE 164 (165)
T ss_pred CcEEEeecCCCCCHHHHHHHHHhcc
Confidence 5899999999999999999998653
No 32
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.92 E-value=1.2e-23 Score=153.21 Aligned_cols=150 Identities=21% Similarity=0.337 Sum_probs=109.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-----CeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-----KSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
.||+++|++|+|||||++++++..+...+.++.+..........+ ..+.+||||| ++.|..+...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~ 70 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG----------QEEFDAITKA 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc----------hHHHHHhHHH
Confidence 489999999999999999999986665555555544332222222 2688999998 3456777788
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+++. +|++++|+|++++.+.... ..|+.. .++|+++|+||+|+.... .+..++...+.+.++
T Consensus 71 ~~~~---~~~~v~v~d~~~~~s~~~l--~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~v~~~~~~~~~~~~~------ 137 (162)
T cd04106 71 YYRG---AQACILVFSTTDRESFEAI--ESWKEKVEAECGDIPMVLVQTKIDLLDQA--VITNEEAEALAKRLQ------ 137 (162)
T ss_pred HhcC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEEChhccccc--CCCHHHHHHHHHHcC------
Confidence 8877 8999999999987765443 233322 579999999999997642 222334444444332
Q ss_pred CCeEEeecCCCCChHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
.+++++||+++.|+++++++|.+
T Consensus 138 ~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 138 LPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 58999999999999999999875
No 33
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.92 E-value=1.8e-23 Score=152.42 Aligned_cols=151 Identities=19% Similarity=0.259 Sum_probs=109.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
++|+++|++|+|||||++++++..+.....++.+..........++ .+.+|||+|. ..+..+...++
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~~~~~~~~~ 70 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ----------ERYQTITKQYY 70 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCc----------HhHHhhHHHHh
Confidence 4899999999999999999998866655566655444333333333 5778999883 34566677777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
+. +|++++|+|++++.++... ..|+. ..+.|+++|+||+|+... +.+..++...+.+.+. +
T Consensus 71 ~~---~~~~i~v~d~~~~~sf~~~--~~~~~~~~~~~~~~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~------~ 137 (161)
T cd04117 71 RR---AQGIFLVYDISSERSYQHI--MKWVSDVDEYAPEGVQKILIGNKADEEQK--RQVGDEQGNKLAKEYG------M 137 (161)
T ss_pred cC---CcEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC------C
Confidence 76 8999999999987776543 23333 246899999999998654 2233344444433322 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHH
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
+++++||+++.|++++|++|.+.
T Consensus 138 ~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 138 DFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred EEEEEeCCCCCCHHHHHHHHHhh
Confidence 89999999999999999999764
No 34
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=9.5e-24 Score=156.11 Aligned_cols=155 Identities=14% Similarity=0.148 Sum_probs=110.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
+.||+++|++|+|||||+++|.+..+...+.++.+..... ....++ .+.+|||+| ++.|..+...+
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~iwDt~G----------~~~~~~~~~~~ 69 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTA-SFEIDEQRIELSLWDTSG----------SPYYDNVRPLC 69 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEE-EEEECCEEEEEEEEECCC----------chhhhhcchhh
Confidence 4689999999999999999999986666555555433321 222232 578899987 34455666778
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEccccccc----------ccCCCchHhHHHHHH
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKV----------AKGRRPDENIKSFQQ 180 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~----------~~~~~~~~~~~~~~~ 180 (219)
++. +|++|+|+|++++.++... ...|.. ..+.|+++|+||+|+.+. ..+.+..++.+++.+
T Consensus 70 ~~~---a~~~ilvfdit~~~Sf~~~-~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~ 145 (178)
T cd04131 70 YPD---SDAVLICFDISRPETLDSV-LKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK 145 (178)
T ss_pred cCC---CCEEEEEEECCChhhHHHH-HHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence 777 8999999999998887542 123332 257899999999998642 123344555556655
Q ss_pred HHHhcCCCCCCeEEeecCCCCC-hHHHHHHHHHH
Q 027757 181 LIRENYPHHPPWIMTSSVTGLG-RDELLLHMSQL 213 (219)
Q Consensus 181 ~~~~~~~~~~~~~~~Sa~~~~~-v~el~~~l~~~ 213 (219)
..+. .+++++||++|.| ++++|..+.+.
T Consensus 146 ~~~~-----~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 146 QLGA-----EIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HhCC-----CEEEECccCcCCcCHHHHHHHHHHH
Confidence 5431 3789999999995 99999998874
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.92 E-value=9.7e-24 Score=153.77 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=104.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||++++....+...+.++.+... ......++ .+.+|||||. +.|..++..++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEVDGQQCMLEILDTAGT----------EQFTAMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCc----------cccchHHHHHh
Confidence 6999999999999999999998765544444433221 12222333 4678999994 34456777888
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+. +|++++|+|++++.+..... ....+. ..+.|+++|+||+|+.+.. ....+....+.+ .++ .+
T Consensus 71 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~----~~~--~~ 139 (163)
T cd04136 71 KN---GQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER--VVSREEGQALAR----QWG--CP 139 (163)
T ss_pred hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--eecHHHHHHHHH----HcC--Ce
Confidence 77 89999999999876654421 122222 2478999999999986532 122222333332 222 68
Q ss_pred eEEeecCCCCChHHHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++++||+++.|++++++++.+.+
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 140 FYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred EEEecCCCCCCHHHHHHHHHHhc
Confidence 99999999999999999998653
No 36
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=4.4e-23 Score=155.62 Aligned_cols=171 Identities=28% Similarity=0.439 Sum_probs=117.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC-CCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA-KAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~-~~~~~~~~~~~~~~~~~ 115 (219)
...++|+++|.+|+|||||+|+|++.. ......++++........+ .+.+|||||+... ......++.++.....+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY 83 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence 346899999999999999999999974 3344566777665444433 7899999997432 22333467777777777
Q ss_pred hh-ccCCccEEEEEEeCCCCCCc-----------ccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 116 FL-NRESLVGVLLLIDASVPPQK-----------IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 116 ~~-~~~~~d~vi~v~d~~~~~~~-----------~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
+. ....++++++|+|++..... .+.++...+...++|+++|+||+|+.+.. .+..+++.+.++
T Consensus 84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-----~~~~~~~~~~~~ 158 (201)
T PRK04213 84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-----DEVLDEIAERLG 158 (201)
T ss_pred HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-----HHHHHHHHHHhc
Confidence 75 55667899999999753221 12344555556789999999999986532 123444444443
Q ss_pred h--cC-CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 184 E--NY-PHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 184 ~--~~-~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
. .+ ....+++++||++| |+++++++|.+.+..
T Consensus 159 ~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 159 LYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 2 01 00136899999999 999999999886654
No 37
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.92 E-value=1.4e-23 Score=156.99 Aligned_cols=155 Identities=14% Similarity=0.217 Sum_probs=107.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
||+++|.+|+|||||+++|+...+...+.++.+..... ....++ .+.+|||||. ..|..++..+++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRK-QVVVDGQPCMLEVLDTAGQ----------EEYTALRDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEE-EEEECCEEEEEEEEECCCc----------hhhHHHHHHHHH
Confidence 68999999999999999999875544444444322221 222222 4788999983 445677788888
Q ss_pred ccCCccEEEEEEeCCCCCCcccHH-HHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLD-CANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
. +|++|+|+|+++..++.... ....+. ..+.|+++|+||+|+... ..+......++.+.++ .
T Consensus 70 ~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~------~ 138 (190)
T cd04144 70 E---GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTEEGAALARRLG------C 138 (190)
T ss_pred h---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHHHHHHHHHHhC------C
Confidence 8 89999999999877654421 122222 146899999999998653 2222333333333322 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+++++||++|.|++++++++.+.+...
T Consensus 139 ~~~e~SAk~~~~v~~l~~~l~~~l~~~ 165 (190)
T cd04144 139 EFIEASAKTNVNVERAFYTLVRALRQQ 165 (190)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 799999999999999999999866543
No 38
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=1.5e-23 Score=160.01 Aligned_cols=155 Identities=14% Similarity=0.254 Sum_probs=113.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
....+||+++|.+|+|||||+++++...+...+.++.+.+.....+..+ ..+.+|||||. +.|..++
T Consensus 10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~ 79 (219)
T PLN03071 10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR 79 (219)
T ss_pred CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCc----------hhhhhhh
Confidence 3567899999999999999999998876777777777766554333332 26889999984 3345677
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
..+++. +|++|+|+|++++.+.... ..|+. ..+.|+++|+||+|+.... +..+.. .+.+.
T Consensus 80 ~~~~~~---~~~~ilvfD~~~~~s~~~i--~~w~~~i~~~~~~~piilvgNK~Dl~~~~---v~~~~~-~~~~~------ 144 (219)
T PLN03071 80 DGYYIH---GQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQV-TFHRK------ 144 (219)
T ss_pred HHHccc---ccEEEEEEeCCCHHHHHHH--HHHHHHHHHhCCCCcEEEEEEchhhhhcc---CCHHHH-HHHHh------
Confidence 778777 8999999999998776543 23433 2578999999999986421 212222 22221
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
...+++++||++|.|++++|++|.+.+.
T Consensus 145 ~~~~~~e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 145 KNLQYYEISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred cCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 2268999999999999999999987654
No 39
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.92 E-value=2.4e-23 Score=151.82 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=105.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|++|+|||||++++++..+.....++.+.... .....++ .+.++||||. ..|..+...+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~ 70 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQCEIDGQWAILDILDTAGQ----------EEFSAMREQY 70 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE-EEEEECCEEEEEEEEECCCC----------cchhHHHHHH
Confidence 369999999999999999999987544444444332221 1222333 5778999994 2446677778
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++++|+|++++.+..... +.+.....+.|+++|+||+|+.... ....+...++.+. . ..
T Consensus 71 ~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~--~~~~~~~~~~~~~----~--~~ 139 (164)
T cd04145 71 MRT---GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR--KVSREEGQELARK----L--KI 139 (164)
T ss_pred Hhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc--eecHHHHHHHHHH----c--CC
Confidence 877 89999999999876654321 1111223578999999999987542 1222233333332 1 25
Q ss_pred CeEEeecCCCCChHHHHHHHHHHH
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+++++||++|.|++++|+++.+.+
T Consensus 140 ~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 140 PYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cEEEeeCCCCCCHHHHHHHHHHhh
Confidence 899999999999999999998764
No 40
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=2.1e-23 Score=159.48 Aligned_cols=159 Identities=13% Similarity=0.071 Sum_probs=114.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..+||+++|++|+|||||+++|++..+...+.++.+...... ...++ .+.+|||+| ++.|..+...
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~-i~~~~~~v~l~iwDTaG----------~e~~~~~~~~ 80 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAG-LETEEQRVELSLWDTSG----------SPYYDNVRPL 80 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEE-EEECCEEEEEEEEeCCC----------chhhHHHHHH
Confidence 467999999999999999999998877666666655443322 22222 578888887 4566778888
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccH--HHHHHhc--cCCCcEEEEEEccccccc----------ccCCCchHhHHHHHH
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDL--DCANWLG--RNNIPLTFVFTKCDKMKV----------AKGRRPDENIKSFQQ 180 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~--~~~~p~iiv~nK~D~~~~----------~~~~~~~~~~~~~~~ 180 (219)
|++. +|++|+|+|++++.++... .....+. ..+.|+++|+||+|+... ..+.+..++.+++.+
T Consensus 81 ~~~~---ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~ 157 (232)
T cd04174 81 CYSD---SDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK 157 (232)
T ss_pred HcCC---CcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH
Confidence 8888 9999999999998877542 1112222 147899999999998642 123455555666655
Q ss_pred HHHhcCCCCCCeEEeecCCCC-ChHHHHHHHHHHHh
Q 027757 181 LIRENYPHHPPWIMTSSVTGL-GRDELLLHMSQLRN 215 (219)
Q Consensus 181 ~~~~~~~~~~~~~~~Sa~~~~-~v~el~~~l~~~~~ 215 (219)
.++. ..++++||++|. |++++|+.+.+..-
T Consensus 158 ~~~~-----~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 158 QLGA-----EVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred HcCC-----CEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 5431 258999999997 89999999877643
No 41
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.92 E-value=2.7e-23 Score=156.50 Aligned_cols=155 Identities=20% Similarity=0.237 Sum_probs=111.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|++|+|||||+++|.+..+...+.++.+..........++ .+.+|||||. +.|..++..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~~~~~~ 74 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ----------ERFRTITST 74 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCc----------hhHHHHHHH
Confidence 368999999999999999999999866555556665444433333333 5789999983 335667778
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+++. +|++++|+|++++.+.... ..|+. ....|+++|+||+|+.+.. ....++..++.+.. +
T Consensus 75 ~~~~---a~~iilv~D~~~~~s~~~~--~~~~~~i~~~~~~~piivVgNK~Dl~~~~--~~~~~~~~~~~~~~----~-- 141 (199)
T cd04110 75 YYRG---THGVIVVYDVTNGESFVNV--KRWLQEIEQNCDDVCKVLVGNKNDDPERK--VVETEDAYKFAGQM----G-- 141 (199)
T ss_pred HhCC---CcEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECccccccc--ccCHHHHHHHHHHc----C--
Confidence 8877 8999999999987765443 23333 2468999999999987532 22233334443332 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+++++||+++.|++++|++|.+.+-
T Consensus 142 ~~~~e~Sa~~~~gi~~lf~~l~~~~~ 167 (199)
T cd04110 142 ISLFETSAKENINVEEMFNCITELVL 167 (199)
T ss_pred CEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 58999999999999999999987553
No 42
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.92 E-value=2.7e-23 Score=151.26 Aligned_cols=153 Identities=24% Similarity=0.228 Sum_probs=108.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||++++++..+.....+..+..........++ .+.+||+||. ..|..+...++
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~~~~~~~~ 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ----------ERFRSVTRSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch----------HHHHHhHHHHh
Confidence 5899999999999999999998866555555555444333333333 5789999984 34556667777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHH-HH---HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDC-AN---WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~~---~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
+. +|++++|+|++++.+...... +. .+...+.|+++|+||+|+... .....++...+.... + .++
T Consensus 71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~----~--~~~ 139 (161)
T cd04113 71 RG---AAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ--REVTFLEASRFAQEN----G--LLF 139 (161)
T ss_pred cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh--ccCCHHHHHHHHHHc----C--CEE
Confidence 76 899999999999776654321 11 122368999999999998753 223333344443332 2 689
Q ss_pred EEeecCCCCChHHHHHHHHHH
Q 027757 193 IMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~ 213 (219)
+++||+++.|++++++++.+.
T Consensus 140 ~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 140 LETSALTGENVEEAFLKCARS 160 (161)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 999999999999999998764
No 43
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.92 E-value=4.1e-23 Score=150.91 Aligned_cols=153 Identities=23% Similarity=0.311 Sum_probs=110.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|++|+|||||++++++..+.....++.+.+........++ .+.++|+||. ..|..+...+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~ 72 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ----------ERYRAITSAY 72 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCh----------HHHHHHHHHH
Confidence 47999999999999999999998866656666666544433333333 5789999983 3456777888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
++. ++++|+|+|++++.+..+. .+|+.. .++|+++|+||+|+... +....++...+.+. . .
T Consensus 73 ~~~---~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~--~~~~~~~~~~~~~~----~--~ 139 (165)
T cd01868 73 YRG---AVGALLVYDITKKQTFENV--ERWLKELRDHADSNIVIMLVGNKSDLRHL--RAVPTEEAKAFAEK----N--G 139 (165)
T ss_pred HCC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccc--ccCCHHHHHHHHHH----c--C
Confidence 777 8999999999987665443 234332 35899999999998754 22333334444332 1 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.+++++||++|.|++++++++.+.+
T Consensus 140 ~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 140 LSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999987653
No 44
>PTZ00369 Ras-like protein; Provisional
Probab=99.92 E-value=2.2e-23 Score=155.74 Aligned_cols=157 Identities=15% Similarity=0.231 Sum_probs=109.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..+||+++|.+|+|||||++++.+..+...+.++.+.+... ....++ .+.+|||||. +.|..++..
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~----------~~~~~l~~~ 72 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRK-QCVIDEETCLLDILDTAGQ----------EEYSAMRDQ 72 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEE-EEEECCEEEEEEEEeCCCC----------ccchhhHHH
Confidence 35899999999999999999999876555555555443322 222222 4678999984 334667777
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+++. +|++|+|+|++++.++.... ....+ ...+.|+++|+||+|+... ..+......++.+.+.
T Consensus 73 ~~~~---~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--~~i~~~~~~~~~~~~~------ 141 (189)
T PTZ00369 73 YMRT---GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE--RQVSTGEGQELAKSFG------ 141 (189)
T ss_pred Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc--cccCHHHHHHHHHHhC------
Confidence 8877 89999999999877654432 11112 2347899999999998643 2222333334433322
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+++++||+++.|++++|+++.+.+..
T Consensus 142 ~~~~e~Sak~~~gi~~~~~~l~~~l~~ 168 (189)
T PTZ00369 142 IPFLETSAKQRVNVDEAFYELVREIRK 168 (189)
T ss_pred CEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999875543
No 45
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.92 E-value=3.6e-23 Score=155.45 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=106.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+|+|.+|+|||||+++|++..+...+.++.+..........++ .+.+|||||..... ...+++ |......++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-~~~~~e-~~~~~~~~~ 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQE-WMDPRFRGL 78 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC-ccchhH-HHHHHHhhh
Confidence 5899999999999999999998765554444443222222223333 57799999964321 122222 333333344
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-HHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+. +|++|+|+|++++.+..... ....+. ..++|+++|+||+|+... +.+..+....+... .+ .
T Consensus 79 ~~---ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~~~~~~~~~---~~--~ 148 (198)
T cd04142 79 RN---SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRHVLSVLVRK---SW--K 148 (198)
T ss_pred cc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHHHHHHHHHH---hc--C
Confidence 44 89999999999887765432 122221 356899999999999653 22223333332221 11 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++++||++|.|++++|+.+.+..-
T Consensus 149 ~~~~e~Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 149 CGYLECSAKYNWHILLLFKELLISAT 174 (198)
T ss_pred CcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 68999999999999999999886543
No 46
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1e-23 Score=150.16 Aligned_cols=156 Identities=20% Similarity=0.248 Sum_probs=130.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...+|++++|+.|+|||+|+-+|+.+.|.+.++.+.|.......+.+++ ++.+|||.| ++.|.++..
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG----------qe~frsv~~ 73 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG----------QESFRSVTR 73 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCC----------cHHHHHHHH
Confidence 4568999999999999999999999999999998888777666666655 567777766 778899999
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
.||+. +-++|+|+|+++..++..+ -.|+.. .+.-+++++||+|+... +++.+++-+.|.++-+
T Consensus 74 syYr~---a~GalLVydit~r~sF~hL--~~wL~D~rq~~~~NmvImLiGNKsDL~~r--R~Vs~EEGeaFA~ehg---- 142 (216)
T KOG0098|consen 74 SYYRG---AAGALLVYDITRRESFNHL--TSWLEDARQHSNENMVIMLIGNKSDLEAR--REVSKEEGEAFAREHG---- 142 (216)
T ss_pred HHhcc---CcceEEEEEccchhhHHHH--HHHHHHHHHhcCCCcEEEEEcchhhhhcc--ccccHHHHHHHHHHcC----
Confidence 99999 8889999999999888665 345542 67889999999999876 5788888999888733
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..++++||+++.|++|.|..+....-
T Consensus 143 --LifmETSakt~~~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 143 --LIFMETSAKTAENVEEAFINTAKEIY 168 (216)
T ss_pred --ceeehhhhhhhhhHHHHHHHHHHHHH
Confidence 57889999999999999988766543
No 47
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.91 E-value=3.5e-23 Score=157.74 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=110.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
+||+++|++|+|||||+++|++..+...+.++.+..........+ ..+.+||||| +..+..+...+
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G----------~~~~~~l~~~~ 70 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGG----------QSIGGKMLDKY 70 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCC----------cHHHHHHHHHH
Confidence 489999999999999999999886655555555544333333332 2678999998 34456777888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
++. +|++|+|+|++++.++.... ....+.. .+.|+++|+||+|+... +.+..+....+.+..+
T Consensus 71 ~~~---ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~--~~v~~~~~~~~~~~~~----- 140 (215)
T cd04109 71 IYG---AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN--RTVKDDKHARFAQANG----- 140 (215)
T ss_pred hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc--cccCHHHHHHHHHHcC-----
Confidence 877 99999999999987765432 1122221 34689999999999643 2333344444444322
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+++++||++|.|++++|+++.+.+.
T Consensus 141 -~~~~~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 141 -MESCLVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred -CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999988654
No 48
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.91 E-value=3.2e-23 Score=151.04 Aligned_cols=154 Identities=18% Similarity=0.173 Sum_probs=106.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|.+|+|||||++++++..+.....++.+.+........+. .+.+|||||. +.|..++..++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~ 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQ----------ERFQTMHASYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc----------hhhhhhhHHHh
Confidence 5899999999999999999998766555444444333222222222 5779999983 34567778888
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-HHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeE
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI 193 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (219)
+. +|++|+|+|++++.+..+.. .+..+.. .+.|+++|+||+|+.... ......+.+ .. ..+++
T Consensus 71 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~----~~--~~~~~ 136 (161)
T cd04124 71 HK---AHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-----TQKKFNFAE----KH--NLPLY 136 (161)
T ss_pred CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-----HHHHHHHHH----Hc--CCeEE
Confidence 87 89999999999876654432 2222222 478999999999985320 111112211 12 26899
Q ss_pred EeecCCCCChHHHHHHHHHHHhhh
Q 027757 194 MTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 194 ~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++||++|.|++++++.+.+..-++
T Consensus 137 ~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 137 YVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999998866543
No 49
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.91 E-value=6.7e-23 Score=150.07 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=109.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
|.|+++|.+|+|||||+|+|++..+... ...+++.... .... +..+.++||||.. .|..++.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~~ 68 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE----------AFTNMRA 68 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcH----------HHHHHHH
Confidence 4699999999999999999998753332 2233444332 2222 3478999999952 2445555
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh----cCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE----NYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 189 (219)
.++.. +|++++|+|++++........+.++...++|+++|+||+|+.... .....+....+.. .+...
T Consensus 69 ~~~~~---~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 140 (168)
T cd01887 69 RGASL---TDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN-----PERVKNELSELGLQGEDEWGGD 140 (168)
T ss_pred HHHhh---cCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc-----HHHHHHHHHHhhccccccccCc
Confidence 55555 899999999998765555566667777889999999999987431 1122222222211 12334
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++|++++.|++++++++.+..+.
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (168)
T cd01887 141 VQIVPTSAKTGEGIDDLLEAILLLAEK 167 (168)
T ss_pred CcEEEeecccCCCHHHHHHHHHHhhhc
Confidence 789999999999999999999988764
No 50
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.91 E-value=6.6e-23 Score=150.38 Aligned_cols=155 Identities=21% Similarity=0.273 Sum_probs=113.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..+||+++|.+|+|||||++++++..+.....++.+.+........+. .+.+|||||. +.+..+...
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~ 72 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ----------ESFRSITRS 72 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHHH
Confidence 357999999999999999999999866565566666554433333333 6889999993 345666777
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
+++. +|++++|+|++++.+..+. ..|+. ..+.|+++|+||+|+.... ....++...+....
T Consensus 73 ~~~~---~d~il~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~------ 139 (168)
T cd01866 73 YYRG---AAGALLVYDITRRETFNHL--TSWLEDARQHSNSNMTIMLIGNKCDLESRR--EVSYEEGEAFAKEH------ 139 (168)
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCcEEEEEECccccccc--CCCHHHHHHHHHHc------
Confidence 7776 8999999999987666443 34443 2478999999999987532 23334444443332
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..+++++||+++.|++++|.++.+.+.
T Consensus 140 ~~~~~e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 140 GLIFMETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 257999999999999999999988764
No 51
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.91 E-value=3.4e-23 Score=153.71 Aligned_cols=157 Identities=17% Similarity=0.228 Sum_probs=107.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|..|+|||||+++|++..+...+.++.+..........++ .+.+|||+|. +.|..++..++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~----------~~~~~~~~~~~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQ----------REFINMLPLVC 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc----------hhHHHhhHHHC
Confidence 5899999999999999999998877666777766554433333433 5788899873 44566777888
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
+. +|++++|+|++++.+..+. ..|+. ....| ++|+||+|+........ .....+..+.+....+ .
T Consensus 71 ~~---a~~iilv~D~t~~~s~~~i--~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~--~ 141 (182)
T cd04128 71 ND---AVAILFMFDLTRKSTLNSI--KEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEE-QEEITKQARKYAKAMK--A 141 (182)
T ss_pred cC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCE-EEEEEchhccccccchh-hhhhHHHHHHHHHHcC--C
Confidence 77 8999999999998776553 22322 23456 68899999863211000 0111122222322223 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++++||++|.|++++|+++.+.+-
T Consensus 142 ~~~e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 142 PLIFCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987654
No 52
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=9.1e-23 Score=167.73 Aligned_cols=192 Identities=24% Similarity=0.323 Sum_probs=137.4
Q ss_pred CCCccccccccccccccceeeeeccCCCCCCCCCCCC--------------eEEEEcCCCCCHHHHHHHHhcCccccccc
Q 027757 4 PGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRP--------------EFAILGRSNVGKSSLINALVRKKELALTS 69 (219)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~v~i~G~~g~GKSslin~l~~~~~~~~~~ 69 (219)
++..+ +..+++.....|+.|..+..+.++++..+.+ .|+++|.+|||||||+|+|++.. +.+.
T Consensus 110 ~~~~~-~va~GG~gG~gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak--~kIa 186 (424)
T PRK12297 110 PGQEV-VVAKGGRGGRGNAHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAK--PKIA 186 (424)
T ss_pred CCcEE-EEECCCCCCcCchhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCC--Cccc
Confidence 44433 3447788888999999999998888887777 99999999999999999999863 5566
Q ss_pred CCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC---CcccH-H
Q 027757 70 KKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP---QKIDL-D 141 (219)
Q Consensus 70 ~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~~~~-~ 141 (219)
+.+.+|..+..... +..++++|+||+..... ....+...|++..+.++++|+|+|+++.. ...+. .
T Consensus 187 ~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~------~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~ 260 (424)
T PRK12297 187 NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS------EGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEK 260 (424)
T ss_pred cCCcceeceEEEEEEEeCCceEEEEECCCCccccc------ccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHH
Confidence 77788877654433 45799999999853211 11234455666666689999999998642 22221 2
Q ss_pred HHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 142 CANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 142 ~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+..++.. .++|.++|+||+|+... .+.++++.+.+. .+++++||+++.|+++++++|.+.+..
T Consensus 261 i~~EL~~y~~~L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~------~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 261 INKELKLYNPRLLERPQIVVANKMDLPEA------EENLEEFKEKLG------PKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred HHHHHhhhchhccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC------CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 2233332 47899999999997432 233444444332 579999999999999999999887654
No 53
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=5.7e-23 Score=153.78 Aligned_cols=156 Identities=19% Similarity=0.178 Sum_probs=107.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
+||+++|++|+|||||+++|.+..+.. .+.++.+.+........++ .+.+|||||. ..+......+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~ 70 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ----------ERFRSVTHAY 70 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc----------HHHHHhhHHH
Confidence 489999999999999999999875432 3334433333222233333 6889999993 4456666777
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
++. +|++|+|+|+++..+..... ....+ ...++|+++|+||+|+... +.+..++.+.+.+.+. .+
T Consensus 71 ~~~---ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~--~~~~~~~~~~l~~~~~------~~ 139 (191)
T cd04112 71 YRD---AHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE--RVVKREDGERLAKEYG------VP 139 (191)
T ss_pred ccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc--cccCHHHHHHHHHHcC------Ce
Confidence 776 89999999999876654321 11111 1247899999999998653 2233334444443322 58
Q ss_pred eEEeecCCCCChHHHHHHHHHHHhh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++||++|.|++++++++.+.+..
T Consensus 140 ~~e~Sa~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 140 FMETSAKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999886644
No 54
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.91 E-value=2.1e-23 Score=153.80 Aligned_cols=155 Identities=14% Similarity=0.076 Sum_probs=107.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|.+|+|||||+.+++...+...+.++.+...... ...++ .+.+|||||. ..|..++..++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQ----------EDYDRLRPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEE-EEECCEEEEEEEEECCCc----------hhhhhhhhhhc
Confidence 6899999999999999999998766666555554322222 22232 5789999983 34456667777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEccccccccc----------CCCchHhHHHHHHHH
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQLI 182 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~ 182 (219)
+. +|++|+|+|++++.++.... ....+. ..+.|+++|+||+|+.+... +.+..++..++.+.+
T Consensus 71 ~~---~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 147 (174)
T cd01871 71 PQ---TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 147 (174)
T ss_pred CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 76 89999999999987765532 122222 24689999999999864311 123334444444433
Q ss_pred HhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
+ .++++++||++|.|++++|+.+.+.
T Consensus 148 ~-----~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 148 G-----AVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred C-----CcEEEEecccccCCHHHHHHHHHHh
Confidence 2 1489999999999999999988763
No 55
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=6.8e-23 Score=153.03 Aligned_cols=154 Identities=23% Similarity=0.296 Sum_probs=110.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||+++|.+..+...+.++.+.+........++ .+.+|||||. ..|..++..++
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~----------~~~~~~~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ----------ERFRSLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc----------HHHHhhHHHHc
Confidence 5899999999999999999999866555666666555444444433 4678999983 34456677777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
+. +|++|+|+|++++.+.... ..|+. ..+.|+++|+||+|+.... .+..+....+.+.. ..
T Consensus 71 ~~---~d~iilv~d~~~~~s~~~i--~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~--~v~~~~~~~~~~~~------~~ 137 (188)
T cd04125 71 RG---AHGYLLVYDVTDQESFENL--KFWINEINRYARENVIKVIVANKSDLVNNK--VVDSNIAKSFCDSL------NI 137 (188)
T ss_pred cC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECCCCcccc--cCCHHHHHHHHHHc------CC
Confidence 77 8999999999987765443 22332 2468999999999987532 22233333333322 25
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+++++||+++.|++++|+++.+.+..
T Consensus 138 ~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 138 PFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999886644
No 56
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.91 E-value=5.4e-23 Score=151.01 Aligned_cols=154 Identities=19% Similarity=0.210 Sum_probs=109.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
+..+||+++|++|+|||||+++|++..+.....+..+..........++ .+.+||||| ++.+..++.
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~ 72 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAG----------QERFRSLRT 72 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCC----------hHHHHHhHH
Confidence 3468999999999999999999998766555555555443333333333 567899998 345677788
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc----------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG----------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
.+++. +|++++|+|++++.+..... .|.. ..+.|+++|+||+|+.. +....++..++.+..+
T Consensus 73 ~~~~~---~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~ 144 (170)
T cd04116 73 PFYRG---SDCCLLTFAVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVVLGNKNDIPE---RQVSTEEAQAWCRENG 144 (170)
T ss_pred HHhcC---CCEEEEEEECCCHHHHHhHH--HHHHHHHHhcccccCCCCcEEEEEECccccc---cccCHHHHHHHHHHCC
Confidence 88877 89999999999876655432 2221 24689999999999863 2233344444444322
Q ss_pred hcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
..+++++||+++.|++++|+++.+.
T Consensus 145 -----~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 145 -----DYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred -----CCeEEEEECCCCCCHHHHHHHHHhh
Confidence 1478999999999999999998764
No 57
>PLN03110 Rab GTPase; Provisional
Probab=99.91 E-value=1.1e-22 Score=155.01 Aligned_cols=156 Identities=18% Similarity=0.230 Sum_probs=114.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..+||+++|++|+|||||+++|.+..+.....++.+..........++ .+.+||||| ++.|..+...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G----------~~~~~~~~~~ 80 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG----------QERYRAITSA 80 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCC----------cHHHHHHHHH
Confidence 468999999999999999999999866555556666554444444443 678899988 4456778888
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
+++. ++++|+|+|++++.++... ..|+. ..+.|+++|+||+|+... +.+..+....+... .
T Consensus 81 ~~~~---~~~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~l~~~----~-- 147 (216)
T PLN03110 81 YYRG---AVGALLVYDITKRQTFDNV--QRWLRELRDHADSNIVIMMAGNKSDLNHL--RSVAEEDGQALAEK----E-- 147 (216)
T ss_pred HhCC---CCEEEEEEECCChHHHHHH--HHHHHHHHHhCCCCCeEEEEEEChhcccc--cCCCHHHHHHHHHH----c--
Confidence 8887 8999999999987776443 23332 257999999999998643 22333333333322 2
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.++++++||+++.|++++|+++.+.+..
T Consensus 148 ~~~~~e~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 148 GLSFLETSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2689999999999999999999876543
No 58
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=2.7e-23 Score=167.76 Aligned_cols=158 Identities=24% Similarity=0.294 Sum_probs=124.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE---EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH---FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+.|+|+|.||+|||||+|+|+++ ..+.+...+|+|++..+ .+.+.++.++||+|+.....+.- ...+....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l----~~~i~~Qa~ 78 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDEL----QELIREQAL 78 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHH----HHHHHHHHH
Confidence 78999999999999999999998 69999999999998643 34566899999999864332211 134455555
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
...+.||++|||+|...+.+..+..+.+++...++|+++|+||+|-... +....++-+.+. -.++.+|
T Consensus 79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~----------e~~~~efyslG~--g~~~~IS 146 (444)
T COG1160 79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA----------EELAYEFYSLGF--GEPVPIS 146 (444)
T ss_pred HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh----------hhhHHHHHhcCC--CCceEee
Confidence 5566699999999999999999999999999888999999999996532 111222222111 3679999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 027757 197 SVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 197 a~~~~~v~el~~~l~~~~ 214 (219)
|..|.|+.+|++.+.+.+
T Consensus 147 A~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 147 AEHGRGIGDLLDAVLELL 164 (444)
T ss_pred hhhccCHHHHHHHHHhhc
Confidence 999999999999998875
No 59
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=2e-23 Score=175.78 Aligned_cols=169 Identities=22% Similarity=0.271 Sum_probs=121.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHH-
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK- 113 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~- 113 (219)
..++|+++|.+|+|||||+|+|++.. ....++.+++|.+... +. .+..+.+|||||+........+.+.|..+..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~-~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEE-RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC-cccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 46899999999999999999999973 4556777777765422 22 2346889999997543333334455544432
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHPP 191 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 191 (219)
.+++. +|++|+|+|++++.+..+...+..+...++|+++|+||+|+.... ......+.+...+ ....+
T Consensus 289 ~~i~~---ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~-------~~~~~~~~i~~~l~~~~~~~ 358 (472)
T PRK03003 289 AAIEA---AEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDED-------RRYYLEREIDRELAQVPWAP 358 (472)
T ss_pred HHHhc---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChh-------HHHHHHHHHHHhcccCCCCC
Confidence 34455 899999999999988888777777777899999999999997531 1111122222111 12368
Q ss_pred eEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++++||++|.|++++++.+.+.+..+
T Consensus 359 ~~~~SAk~g~gv~~lf~~i~~~~~~~ 384 (472)
T PRK03003 359 RVNISAKTGRAVDKLVPALETALESW 384 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999887654
No 60
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.91 E-value=9.4e-23 Score=154.77 Aligned_cols=154 Identities=23% Similarity=0.299 Sum_probs=109.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-c---CeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-N---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
.+||+++|++|+|||||+++|++..+.....++.+.......+.. + ..+.+|||||. +.|..+...
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~ 71 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ----------ERFRSITRS 71 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcc----------hhHHHHHHH
Confidence 479999999999999999999987654444444443333222222 1 25788999983 445677778
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
+++. +|++|+|+|++++.+..+. ..|+. ....|+++|+||+|+... ..+..+....+.+.++
T Consensus 72 ~~~~---~d~iilv~D~~~~~Sf~~l--~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~--~~v~~~~~~~~~~~~~---- 140 (211)
T cd04111 72 YYRN---SVGVLLVFDITNRESFEHV--HDWLEEARSHIQPHRPVFILVGHKCDLESQ--RQVTREEAEKLAKDLG---- 140 (211)
T ss_pred HhcC---CcEEEEEEECCCHHHHHHH--HHHHHHHHHhcCCCCCeEEEEEEccccccc--cccCHHHHHHHHHHhC----
Confidence 8877 8999999999997766543 23332 245788999999998763 2333344444444322
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+++++||+++.|+++++++|.+...
T Consensus 141 --~~~~e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 141 --MKYIETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred --CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987554
No 61
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.91 E-value=1.3e-22 Score=147.96 Aligned_cols=153 Identities=24% Similarity=0.284 Sum_probs=108.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||+++|++..+.....++.+..........+. .+.++|+||. ..+......++
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~~~~~ 70 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ----------ERFRSITSSYY 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh----------HHHHHHHHHHh
Confidence 5899999999999999999998755444444444433333333333 5779999983 34556677777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
+. +|++|+|+|++++.+.... ..|+.. .++|+++|+||+|+.... ....+..+++.+. .+ .
T Consensus 71 ~~---~d~~ilv~d~~~~~s~~~~--~~~l~~~~~~~~~~~pivvv~nK~D~~~~~--~~~~~~~~~~~~~----~~--~ 137 (164)
T smart00175 71 RG---AVGALLVYDITNRESFENL--KNWLKELREYADPNVVIMLVGNKSDLEDQR--QVSREEAEAFAEE----HG--L 137 (164)
T ss_pred CC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEEchhccccc--CCCHHHHHHHHHH----cC--C
Confidence 76 8999999999987766443 233332 579999999999987532 2223344444332 22 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++++|++++.|++++++++.+.+.
T Consensus 138 ~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 138 PFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999999988654
No 62
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.91 E-value=5.5e-23 Score=150.54 Aligned_cols=151 Identities=14% Similarity=0.237 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||+++++...+...+.++.+.......+..+ ..+.+|||||.. .+..+...++
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE----------KFGGLRDGYY 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCCh----------hhccccHHHh
Confidence 489999999999999999999775555566665544432222222 268899999953 2234455666
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+. +|++|+|+|++++.+.... ..|+.. .+.|+++|+||+|+.... ... ...++.+ . ..++
T Consensus 71 ~~---~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~piiiv~nK~Dl~~~~---~~~-~~~~~~~----~--~~~~ 135 (166)
T cd00877 71 IG---GQCAIIMFDVTSRVTYKNV--PNWHRDLVRVCGNIPIVLCGNKVDIKDRK---VKA-KQITFHR----K--KNLQ 135 (166)
T ss_pred cC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCcEEEEEEchhccccc---CCH-HHHHHHH----H--cCCE
Confidence 66 8999999999987776543 223332 379999999999987321 111 1112211 1 2368
Q ss_pred eEEeecCCCCChHHHHHHHHHHHh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++||++|.|++++|++|.+.+.
T Consensus 136 ~~e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 136 YYEISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred EEEEeCCCCCChHHHHHHHHHHHH
Confidence 999999999999999999987654
No 63
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.91 E-value=1.2e-22 Score=149.20 Aligned_cols=157 Identities=21% Similarity=0.233 Sum_probs=107.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||++++.+..+.....++.+.+........++ .+.+||+||. ..+..++..++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~~~~ 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ----------ERFQSLGVAFY 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCCh----------HHHHhHHHHHh
Confidence 4899999999999999999999865555555555443333333333 4678999984 33456677777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHH-----HHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDC-----ANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-----~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
+. +|++|+++|+.++.+...... ..... ..++|+++|+||+|+..+ .....+..+.+.+..+
T Consensus 71 ~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~----- 140 (172)
T cd01862 71 RG---ADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK--RQVSTKKAQQWCQSNG----- 140 (172)
T ss_pred cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc--cccCHHHHHHHHHHcC-----
Confidence 77 899999999998765433211 11111 137899999999999752 1122333334333222
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
..+++++|+++|.|++++++++.+.+..
T Consensus 141 ~~~~~~~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 141 NIPYFETSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2689999999999999999999886544
No 64
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.91 E-value=7.9e-23 Score=149.95 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=103.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...++|+++|.+|+|||||+++|....+ ..+.++.+.+..... ..+..+.+|||||. +.+..++..++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~~~~~~~-~~~~~~~l~Dt~G~----------~~~~~~~~~~~ 74 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVT-YKNVKFNVWDVGGQ----------DKIRPLWRHYY 74 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCC-ccccCCcccceEEEE-ECCEEEEEEECCCC----------HHHHHHHHHHh
Confidence 3468999999999999999999987643 333444443332111 12346899999984 34566777888
Q ss_pred hccCCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+. +|++|+|+|++++.+.... .+.+.+.. .+.|+++|+||+|+... ...+++++..+. ........+
T Consensus 75 ~~---a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~-~~~~~~~~~ 146 (168)
T cd04149 75 TG---TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA----MKPHEIQEKLGL-TRIRDRNWY 146 (168)
T ss_pred cc---CCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC----CCHHHHHHHcCC-CccCCCcEE
Confidence 87 8999999999987655432 11122222 46899999999998642 112233332211 111112246
Q ss_pred eEEeecCCCCChHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~ 212 (219)
++++||++|.|++++|+||.+
T Consensus 147 ~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 147 VQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred EEEeeCCCCCChHHHHHHHhc
Confidence 899999999999999999864
No 65
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=2e-23 Score=155.96 Aligned_cols=157 Identities=14% Similarity=0.175 Sum_probs=105.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
.||+++|++|+|||||+++|.+..+...+.++.+..... ....+ ..+.+|||+|. +.|..++..++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~l~i~Dt~G~----------~~~~~l~~~~~ 69 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVDGLHIELSLWDTAGQ----------EEFDRLRSLSY 69 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEECCEEEEEEEEECCCC----------hhccccccccc
Confidence 389999999999999999999986655555554433221 12222 25789999984 23345556666
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEcccccccccC----------CCchHhHHHHHHHH
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAKG----------RRPDENIKSFQQLI 182 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~~----------~~~~~~~~~~~~~~ 182 (219)
+. +|++|+|+|++++.++.... .+..+.. .+.|+++|+||+|+...... .+..++..++.+
T Consensus 70 ~~---a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~-- 144 (189)
T cd04134 70 AD---TDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAK-- 144 (189)
T ss_pred cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHH--
Confidence 66 89999999999987765432 1222222 47899999999998754211 111111222221
Q ss_pred HhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..+ .++++++||++|.|++++|+++.+.+.
T Consensus 145 --~~~-~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 145 --RIN-ALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred --HcC-CCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 111 257999999999999999999988664
No 66
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.91 E-value=1.9e-23 Score=157.93 Aligned_cols=218 Identities=60% Similarity=0.913 Sum_probs=183.6
Q ss_pred CCCCCCccccccccccccccceeeeec--cCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccC-CCCeeEE
Q 027757 1 MILPGSNIVVGPYAGHSQIKEVEFVKS--SGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSK-KPGKTQL 77 (219)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t~~ 77 (219)
|+.+++||..+++..+.++.+..++.. .....+++...+++++++|.+|+|||||+|.++.....+.... ..+-|+.
T Consensus 96 ~v~~~snI~~sPf~~r~qv~~~~~V~~~~s~~~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~ 175 (320)
T KOG2486|consen 96 RVLSGSNIDVSPFLARKQVKSEKRVHGDGSVTAEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQA 175 (320)
T ss_pred HhccCCCcccCcccCchhhccceeeeccccceeccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcccee
Confidence 578999999999999999999999988 5666788889999999999999999999999999887777666 8899999
Q ss_pred eeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEE
Q 027757 78 INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVF 157 (219)
Q Consensus 78 ~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~ 157 (219)
++++.++..++.+|.||++...+.......|.++.+.|+..++..--+.+++|++.+....+...+.|+.+.++|+.+|+
T Consensus 176 in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vf 255 (320)
T KOG2486|consen 176 INHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVF 255 (320)
T ss_pred eeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEee
Confidence 99999999999999999888888788888999999999999888878899999999999999999999999999999999
Q ss_pred Eccccccccc--CCCchHhHHH-HHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757 158 TKCDKMKVAK--GRRPDENIKS-FQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWD 218 (219)
Q Consensus 158 nK~D~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~~ 218 (219)
||||...... .......+.. +.......+....|++.+|+.++.|+++|+-++......+-
T Consensus 256 TK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~~~~d 319 (320)
T KOG2486|consen 256 TKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLRGYWD 319 (320)
T ss_pred ehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhhhhcccc
Confidence 9999764332 2333344444 22222333344578899999999999999988887665543
No 67
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.91 E-value=1.1e-22 Score=152.41 Aligned_cols=158 Identities=19% Similarity=0.225 Sum_probs=108.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
+||+++|++|+|||||+++|++..+.. .+.++.+..........++ .+.+|||||. ..+..+...+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~~~~ 70 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS----------ERYEAMSRIY 70 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhHhh
Confidence 489999999999999999999876543 3555555444333344443 4668999983 2345566677
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH-HHHHHhcc--CCCcEEEEEEccccccccc--CCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL-DCANWLGR--NNIPLTFVFTKCDKMKVAK--GRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++++|+|++++.+.... ..+..+.. .+.|+++|+||+|+..... ..+..++..++.... + .
T Consensus 71 ~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~----~--~ 141 (193)
T cd04118 71 YRG---AKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI----K--A 141 (193)
T ss_pred cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc----C--C
Confidence 766 8999999999987665432 12222222 4689999999999865321 222223333333322 1 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+++++||+++.|++++++++.+.+.+
T Consensus 142 ~~~~~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 142 QHFETSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999986643
No 68
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.91 E-value=5.8e-23 Score=149.82 Aligned_cols=154 Identities=17% Similarity=0.179 Sum_probs=105.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|.+|+|||||+++++...+.....++.+. ........++ .+.+|||||. +.|..++..+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~ 69 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGT----------EQFASMRDLY 69 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEEEECCEEEEEEEEECCCc----------ccccchHHHH
Confidence 368999999999999999999987655544444331 1222222333 4678999994 3345667778
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++++|+|++++.+..+.. ...++. ..++|+++|+||+|+.... .+...+...+...+ + .
T Consensus 70 ~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~--~~~~~~~~~~~~~~----~--~ 138 (163)
T cd04176 70 IKN---GQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER--EVSSAEGRALAEEW----G--C 138 (163)
T ss_pred Hhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC--ccCHHHHHHHHHHh----C--C
Confidence 777 89999999999877654431 112222 2579999999999986532 22222233333222 2 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHH
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+++++||+++.|+++++.++.+.+
T Consensus 139 ~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 139 PFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred EEEEecCCCCCCHHHHHHHHHHhc
Confidence 889999999999999999998654
No 69
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.91 E-value=1.1e-22 Score=154.75 Aligned_cols=161 Identities=22% Similarity=0.192 Sum_probs=110.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR 119 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (219)
+||+++|.+|+|||||+++|+...+. ...++.+....... .....+.+|||||. +.|..+...+++.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~~~~Tig~~~~~~~-~~~~~l~iwDt~G~----------e~~~~l~~~~~~~- 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQ-WGPYNISIWDTAGR----------EQFHGLGSMYCRG- 67 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-CCCCccceEEEEEE-eeEEEEEEEeCCCc----------ccchhhHHHHhcc-
Confidence 48999999999999999999998654 33343333222111 12346889999984 2345677788877
Q ss_pred CCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEccccccc-----------------ccCCCchHhHHHH
Q 027757 120 ESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKV-----------------AKGRRPDENIKSF 178 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~-----------------~~~~~~~~~~~~~ 178 (219)
+|++|+|+|+++..++.... .+..+ ...+.|+++|+||+|+... ..+.+..++...+
T Consensus 68 --ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~ 145 (220)
T cd04126 68 --AAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF 145 (220)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHH
Confidence 89999999999987765532 11111 1256899999999998751 1245555556565
Q ss_pred HHHHHhc------C--CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 179 QQLIREN------Y--PHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 179 ~~~~~~~------~--~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+..... + ....+++++||++|.|++++|..+.+.+.
T Consensus 146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5543310 0 01257999999999999999999987553
No 70
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.91 E-value=1.5e-23 Score=169.25 Aligned_cols=172 Identities=26% Similarity=0.337 Sum_probs=132.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
...||+|+|.||+|||||+|+|++. ....+++.+|+|++.-.. ..+.++.++||.|+.....-..+.+.|.....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt- 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART- 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh-
Confidence 4699999999999999999999997 799999999999975333 23458999999998654333333444433322
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCCCe
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHPPW 192 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 192 (219)
+.....+|.|++|+|++++.+.+++.+..++.+.+.++++|+||||+.... ....+++...+...+ -...++
T Consensus 255 -~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~-----~~~~~~~k~~i~~~l~~l~~a~i 328 (444)
T COG1160 255 -LKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED-----EATMEEFKKKLRRKLPFLDFAPI 328 (444)
T ss_pred -HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCch-----hhHHHHHHHHHHHHhccccCCeE
Confidence 223344899999999999999999999999999999999999999987641 123334433333322 234799
Q ss_pred EEeecCCCCChHHHHHHHHHHHhhh
Q 027757 193 IMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+++||+++.|+.++++.+.+....+
T Consensus 329 ~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 329 VFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHh
Confidence 9999999999999999999877655
No 71
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.91 E-value=9e-23 Score=152.17 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=108.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-C---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-K---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
+||+++|++|+|||||+++|.+..+...+.++.+...... .... + .+.+|||||. +.|..+...+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~ 69 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQ----------EEYDRLRPLS 69 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCc----------hhHHHHHHHh
Confidence 4899999999999999999999865544444433332222 2222 2 5788999983 3456667777
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEccccccccc--CCCchHhHHHHHHHHHhcCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAK--GRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 188 (219)
++. +|++|+|+|+++..++.... ..|+. ..+.|+++|+||+|+..... ..+...+.+++....+ .
T Consensus 70 ~~~---ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~----~ 141 (187)
T cd04132 70 YPD---VDVLLICYAVDNPTSLDNVE-DKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG----A 141 (187)
T ss_pred CCC---CCEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC----C
Confidence 766 89999999999877765432 12322 24789999999999865321 1223334444443322 1
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+++++||++|.|++++|+.+.+.+.+
T Consensus 142 -~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 142 -FAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred -cEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 278999999999999999999886654
No 72
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.91 E-value=1.9e-22 Score=146.94 Aligned_cols=155 Identities=20% Similarity=0.227 Sum_probs=108.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|++|+|||||++++++..+.....++.+..........+. .+.+||+||. +.+......+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~----------~~~~~~~~~~ 70 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ----------ERYRSLAPMY 70 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch----------HHHHHHHHHH
Confidence 36999999999999999999999865554666666544333333333 6789999983 3456667777
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
++. +|++++|+|++++.+..... .+..+. ..+.|+++++||+|+... .....+....+.... + .+
T Consensus 71 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~----~--~~ 139 (163)
T cd01860 71 YRG---AAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESK--RQVSTEEAQEYADEN----G--LL 139 (163)
T ss_pred hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc--CcCCHHHHHHHHHHc----C--CE
Confidence 777 89999999999876554321 112222 256899999999998743 222233333333322 1 57
Q ss_pred eEEeecCCCCChHHHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++++||++|.|++++++++.+.+
T Consensus 140 ~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 140 FFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998754
No 73
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=5.2e-23 Score=147.66 Aligned_cols=153 Identities=16% Similarity=0.200 Sum_probs=122.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
..||+++|..++||||||++|+...+...+..+.|.+.-.......+ .+.+|||. ||++|+++...|
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTA----------GQERFrslipsY 91 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA----------GQERFRSLIPSY 91 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecc----------cHHHHhhhhhhh
Confidence 38999999999999999999999888888888888776544443333 46666665 599999999999
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
+|+ +.++|+|+|+++..++.+. -+|+.. .++-+++|+||.||.+. +++..++-+...+.++
T Consensus 92 ~Rd---s~vaviVyDit~~~Sfe~t--~kWi~dv~~e~gs~~viI~LVGnKtDL~dk--rqvs~eEg~~kAkel~----- 159 (221)
T KOG0094|consen 92 IRD---SSVAVIVYDITDRNSFENT--SKWIEDVRRERGSDDVIIFLVGNKTDLSDK--RQVSIEEGERKAKELN----- 159 (221)
T ss_pred ccC---CeEEEEEEeccccchHHHH--HHHHHHHHhccCCCceEEEEEcccccccch--hhhhHHHHHHHHHHhC-----
Confidence 999 8999999999998887653 466663 35789999999999986 4455555565555555
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
..++++||+.|.|++++|..|...+
T Consensus 160 -a~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 160 -AEFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred -cEEEEecccCCCCHHHHHHHHHHhc
Confidence 5899999999999999999887654
No 74
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=1.7e-22 Score=165.24 Aligned_cols=191 Identities=24% Similarity=0.271 Sum_probs=130.6
Q ss_pred ccccccccccceeeeeccCCCCCCCCCCCC--------------eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeE
Q 027757 11 GPYAGHSQIKEVEFVKSSGRAKDCPKDDRP--------------EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ 76 (219)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~ 76 (219)
..+++.....|..|..+..+.++.+....+ .|+|+|.+|||||||+|+|++.. ..+++.+.+|+
T Consensus 117 ~a~GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~ 194 (390)
T PRK12298 117 VAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTL 194 (390)
T ss_pred EecCCCCccchhhhccCccCCCcccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCcc
Confidence 347777778888888888777776666655 89999999999999999999864 57888888888
Q ss_pred EeeEEEe--c--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC---CCccc-HHHHHHhcc
Q 027757 77 LINHFLV--N--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP---PQKID-LDCANWLGR 148 (219)
Q Consensus 77 ~~~~~~~--~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~-~~~~~~~~~ 148 (219)
.+..... + ..++++||||+........ .+...+++..+.+|++++|+|++.. ....+ ....+.+..
T Consensus 195 ~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~------~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~ 268 (390)
T PRK12298 195 VPNLGVVRVDDERSFVVADIPGLIEGASEGA------GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEK 268 (390)
T ss_pred CcEEEEEEeCCCcEEEEEeCCCccccccchh------hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHh
Confidence 7544333 2 2599999999864321111 1222333334458999999998832 22221 223333333
Q ss_pred -----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 149 -----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 149 -----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.++|+++|+||+|+... ..+.+..+.+...+....+++++||+++.|+++++++|.+.+..
T Consensus 269 ~~~~L~~kP~IlVlNKiDl~~~-------~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 269 YSPKLAEKPRWLVFNKIDLLDE-------EEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred hhhhhcCCCEEEEEeCCccCCh-------HHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 36899999999998653 22333334333333322478999999999999999999887643
No 75
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.91 E-value=2.3e-22 Score=147.35 Aligned_cols=159 Identities=25% Similarity=0.265 Sum_probs=99.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
++|+++|.+|+|||||+|+|++..+ ...+.++++....... .+.++.+|||||+............+..+.. +
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~--~ 76 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP--EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITA--L 76 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC--ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHH--H
Confidence 5899999999999999999999743 2333444444333222 2348999999997432111111111111211 1
Q ss_pred hccCCccEEEEEEeCCCCCCcc--c-HHHHHHhccC--CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKI--D-LDCANWLGRN--NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~--~-~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
. ..+|++|+|+|+++..+.. . ......+... +.|+++|+||+|+.... ...+ .+.+... ...+
T Consensus 77 ~--~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-------~~~~-~~~~~~~--~~~~ 144 (168)
T cd01897 77 A--HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE-------DLSE-IEEEEEL--EGEE 144 (168)
T ss_pred H--hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh-------hHHH-HHHhhhh--ccCc
Confidence 1 1158899999999865421 1 2334444443 79999999999997542 1111 1122111 2368
Q ss_pred eEEeecCCCCChHHHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++++||++|.|++++++++.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 145 VLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred eEEEEecccCCHHHHHHHHHHHh
Confidence 99999999999999999998764
No 76
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.91 E-value=2e-22 Score=168.58 Aligned_cols=171 Identities=27% Similarity=0.342 Sum_probs=123.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHH-
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFT- 112 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~- 112 (219)
...++|+++|.+|+|||||+|+|++. ......+.+++|.+..... .+..+.++||||+..........+.|....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 34689999999999999999999997 3455667777776543222 234799999999754322222222222211
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC--CCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHP 190 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 190 (219)
..+++. +|++|+|+|++++.+..+..++..+...++|+++|+||+|+... .+..+++.+.+...+. ..+
T Consensus 249 ~~~~~~---ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~ 319 (429)
T TIGR03594 249 LKAIER---ADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD------EKTREEFKKELRRKLPFLDFA 319 (429)
T ss_pred HHHHHh---CCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC------HHHHHHHHHHHHHhcccCCCC
Confidence 123444 89999999999999988888788777788999999999999721 1334445455444332 247
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+++++||++|.|++++++++.+..+.+
T Consensus 320 ~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 320 PIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999998877654
No 77
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.91 E-value=1.7e-22 Score=147.00 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=106.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
.||+++|++|+|||||+++|++..+.....+..+..........++ .+.+|||||. ..++.+...++
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~----------~~~~~~~~~~~ 70 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ----------ERFRSLIPSYI 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHHHHh
Confidence 4899999999999999999999865544444444333333333333 5789999983 34566677777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-HHHHhc-c--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLG-R--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
+. +|++++|+|++++.+..... .+..+. . .+.|+++++||+|+... .....+....+.+... .++
T Consensus 71 ~~---~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~------~~~ 139 (161)
T cd01861 71 RD---SSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK--RQVSTEEGEKKAKELN------AMF 139 (161)
T ss_pred cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc--CccCHHHHHHHHHHhC------CEE
Confidence 76 89999999999876654432 112111 1 35899999999999643 2223333333333321 679
Q ss_pred EEeecCCCCChHHHHHHHHHH
Q 027757 193 IMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~ 213 (219)
+++||+++.|++++++++.+.
T Consensus 140 ~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 140 IETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred EEEeCCCCCCHHHHHHHHHHh
Confidence 999999999999999999764
No 78
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.90 E-value=6.1e-23 Score=151.27 Aligned_cols=157 Identities=20% Similarity=0.207 Sum_probs=104.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
....++|+++|++|+|||||+++|.+. ....+.++.+....... ..+..+.++||||. ..++.++..+
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~~~-~~~~~l~l~D~~G~----------~~~~~~~~~~ 78 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKTLE-YEGYKLNIWDVGGQ----------KTLRPYWRNY 78 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEEEE-ECCEEEEEEECCCC----------HHHHHHHHHH
Confidence 345689999999999999999999987 44444554442221111 12346889999984 2345566777
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH--HHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL--DCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++++|+|++++.+.... .+..++. ..+.|+++|+||+|+.... ..++++.+.+... .....+
T Consensus 79 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~-~~~~~~ 150 (173)
T cd04154 79 FES---TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL----SEEEIREALELDK-ISSHHW 150 (173)
T ss_pred hCC---CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC----CHHHHHHHhCccc-cCCCce
Confidence 776 8999999999987554332 1122222 2679999999999986531 1222322222110 011236
Q ss_pred CeEEeecCCCCChHHHHHHHHH
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
+++++||++|.|++++++++..
T Consensus 151 ~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 151 RIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEEeccCCCCcCHHHHHHHHhc
Confidence 8999999999999999999853
No 79
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=7.8e-23 Score=171.22 Aligned_cols=169 Identities=27% Similarity=0.319 Sum_probs=122.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHH-
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK- 113 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~- 113 (219)
..++|+++|.+|+|||||+|+|++. ......+.+++|.+.... ..+..+.++||||+........+.+.|.....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 4689999999999999999999997 456677788888764322 23347999999997543322223333322211
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC--CCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHPP 191 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 191 (219)
.+++. +|++|+|+|++++.+..+..+...+...++|+++|+||+|+.+. +..++..+.+...+. ...+
T Consensus 251 ~~~~~---ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~-------~~~~~~~~~~~~~l~~~~~~~ 320 (435)
T PRK00093 251 KAIER---ADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDE-------KTMEEFKKELRRRLPFLDYAP 320 (435)
T ss_pred HHHHH---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCH-------HHHHHHHHHHHHhcccccCCC
Confidence 23334 89999999999999988888888888888999999999998743 223333333333221 3478
Q ss_pred eEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++++||+++.|++++++.+.+..+.+
T Consensus 321 i~~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 321 IVFISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998877654
No 80
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.90 E-value=2.2e-22 Score=147.83 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=108.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHH-HHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWS-SFTKG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~-~~~~~ 114 (219)
.++|+++|++|+|||||++++++..+.....++.+.......+..++ .+.+|||||. +.|. .+...
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~ 71 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ----------ERFRKSMVQH 71 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCCh----------HHHHHhhHHH
Confidence 47999999999999999999998765555555554443333333333 6789999984 2232 35566
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
+++. +|++++|+|++++.+..... .|+. ..++|+++|+||+|+... +.+..+...++.+.. .
T Consensus 72 ~~~~---~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~----~ 140 (170)
T cd04115 72 YYRN---VHAVVFVYDVTNMASFHSLP--SWIEECEQHSLPNEVPRILVGNKCDLREQ--IQVPTDLAQRFADAH----S 140 (170)
T ss_pred hhcC---CCEEEEEEECCCHHHHHhHH--HHHHHHHHhcCCCCCCEEEEEECccchhh--cCCCHHHHHHHHHHc----C
Confidence 6666 89999999999887765542 2332 256999999999998754 223333334443332 2
Q ss_pred CCCCeEEeecCC---CCChHHHHHHHHHHHh
Q 027757 188 HHPPWIMTSSVT---GLGRDELLLHMSQLRN 215 (219)
Q Consensus 188 ~~~~~~~~Sa~~---~~~v~el~~~l~~~~~ 215 (219)
++++++||++ +.|++++|..+.+.++
T Consensus 141 --~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~ 169 (170)
T cd04115 141 --MPLFETSAKDPSENDHVEAIFMTLAHKLK 169 (170)
T ss_pred --CcEEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence 6899999999 8899999998887653
No 81
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.2e-22 Score=161.59 Aligned_cols=191 Identities=25% Similarity=0.276 Sum_probs=127.1
Q ss_pred cccccccccccceeeeeccCCCCCCCCCC--------------CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCee
Q 027757 10 VGPYAGHSQIKEVEFVKSSGRAKDCPKDD--------------RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT 75 (219)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t 75 (219)
+....+.....|..|..+..+.+.....+ ...|+|+|.+|||||||+|+|++.. +.+.+.+.+|
T Consensus 115 ~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT 192 (335)
T PRK12299 115 LVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTT 192 (335)
T ss_pred EEecCCCCcCCchhhccccCCCCccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCce
Confidence 33466777777878877666555433322 3689999999999999999999863 5577777877
Q ss_pred EEeeEEE--e--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc--
Q 027757 76 QLINHFL--V--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR-- 148 (219)
Q Consensus 76 ~~~~~~~--~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-- 148 (219)
..+.... . ..++.++|+||+....... ..+...|++..+.++++|+|+|+++..+..+.. ....+..
T Consensus 193 ~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~ 266 (335)
T PRK12299 193 LHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYS 266 (335)
T ss_pred eCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhh
Confidence 7654433 2 2369999999975322111 123445555556689999999999765443322 2222222
Q ss_pred ---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 149 ---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 149 ---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.++|+++|+||+|+.+... ..+...+...... ..+++++||+++.|+++++++|.+.+..
T Consensus 267 ~~L~~kp~IIV~NKiDL~~~~~------~~~~~~~~~~~~~--~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 267 PELADKPRILVLNKIDLLDEEE------EREKRAALELAAL--GGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred hhcccCCeEEEEECcccCCchh------HHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3689999999999875421 1111111111111 2589999999999999999999887754
No 82
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.90 E-value=1.8e-22 Score=146.91 Aligned_cols=152 Identities=22% Similarity=0.227 Sum_probs=108.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||+++|++..+.....++.+.+........+ ..+.++||||. ..+......++
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~ 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ----------ERFRTLTSSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhHHHh
Confidence 589999999999999999999986555567777666554433333 36889999994 22344555666
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHH-H----HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDC-A----NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~----~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+. +|++++|+|++++.+...... + .+....+.|+++|+||+|+... ....++..++.... .++
T Consensus 71 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~---~~~~~~~~~~~~~~------~~~ 138 (161)
T cd01863 71 RG---AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR---EVTREEGLKFARKH------NML 138 (161)
T ss_pred CC---CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc---ccCHHHHHHHHHHc------CCE
Confidence 55 899999999998776544321 1 1222367899999999999732 22233444444332 268
Q ss_pred eEEeecCCCCChHHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
++++||++|.|++++++++.+.
T Consensus 139 ~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 139 FIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred EEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999999988764
No 83
>PRK00089 era GTPase Era; Reviewed
Probab=99.90 E-value=2.3e-22 Score=160.03 Aligned_cols=162 Identities=27% Similarity=0.298 Sum_probs=115.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
..|+++|++|||||||+|+|++. ..+.+++.+.+++.... ...+ .++.++||||+..... ... +.+.....
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~---~~~~~~~~ 79 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALN---RAMNKAAW 79 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHH---HHHHHHHH
Confidence 46999999999999999999997 46667777777665322 2222 4899999999753321 111 11222222
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
.....+|++++|+|+++..+..+..+...+...+.|+++|+||+|+... ........+.+...++ ..+++++|
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~------~~~l~~~~~~l~~~~~-~~~i~~iS 152 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD------KEELLPLLEELSELMD-FAEIVPIS 152 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC------HHHHHHHHHHHHhhCC-CCeEEEec
Confidence 2334489999999999866665566667777678999999999999732 1344455555554333 36899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 027757 197 SVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 197 a~~~~~v~el~~~l~~~~ 214 (219)
|+++.|++++++++.+.+
T Consensus 153 A~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999998765
No 84
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=1.8e-22 Score=149.88 Aligned_cols=160 Identities=15% Similarity=0.098 Sum_probs=107.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
...+||+++|++|+|||||++++....+. .+.++.+.... ... .+..+.++||||. ..++.++..+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~-~~~~T~~~~~~--~~~~~~~~~~l~D~~G~----------~~~~~~~~~~ 81 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVV-TTIPTIGFNVE--TVEYKNLKFTMWDVGGQ----------DKLRPLWRHY 81 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCccccceE--EEEECCEEEEEEECCCC----------HhHHHHHHHH
Confidence 34589999999999999999999765443 34444443322 122 2346889999984 3456778888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PH 188 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 188 (219)
++. +|++|+|+|++++.+..+. .+.+.+.. .++|+++|+||.|+.... ..++....++... ..
T Consensus 82 ~~~---ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~i~~~l~~~~~~~~ 151 (182)
T PTZ00133 82 YQN---TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM-------STTEVTEKLGLHSVRQR 151 (182)
T ss_pred hcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC-------CHHHHHHHhCCCcccCC
Confidence 888 9999999999986554432 12222222 468999999999986421 1123333333211 11
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhhhcC
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~~~ 219 (219)
.+.++++||++|.|++++++||.+.+.+..|
T Consensus 152 ~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~~ 182 (182)
T PTZ00133 152 NWYIQGCCATTAQGLYEGLDWLSANIKKSMQ 182 (182)
T ss_pred cEEEEeeeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 2346789999999999999999987665543
No 85
>PLN03118 Rab family protein; Provisional
Probab=99.90 E-value=3.3e-22 Score=151.98 Aligned_cols=157 Identities=18% Similarity=0.171 Sum_probs=111.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...+||+++|.+|+|||||+++|++.. ...+.++.+.+..+..+..++ .+.++||||. ..|..+..
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~ 80 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ----------ERFRTLTS 80 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC-CCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc----------hhhHHHHH
Confidence 346899999999999999999999874 455666666555444444433 5789999993 34456677
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHH-H-HHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDC-A-NWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~-~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
.+++. +|++|+|+|++++.++..... + ..+. ..+.|+++|+||+|+.... ....+....+....
T Consensus 81 ~~~~~---~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~--~i~~~~~~~~~~~~----- 150 (211)
T PLN03118 81 SYYRN---AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESER--DVSREEGMALAKEH----- 150 (211)
T ss_pred HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC--ccCHHHHHHHHHHc-----
Confidence 78877 899999999998776654321 1 1111 2467999999999987542 22223333333221
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.++++++||+++.|+++++++|.+.+.
T Consensus 151 -~~~~~e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 151 -GCLFLECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred -CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 257999999999999999999987653
No 86
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.90 E-value=2.9e-22 Score=146.21 Aligned_cols=152 Identities=19% Similarity=0.284 Sum_probs=104.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC--cccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRK--KELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~--~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
+||+++|++|+|||||+++|.+. .+...+.++.+.......... ...+.+||||| +..+..+..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~ 70 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAG----------QELYSDMVS 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCC----------HHHHHHHHH
Confidence 48999999999999999999864 344555555554433332322 12688999998 345566677
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
.+++. +|++++|+|++++.+.... ..|+.. .+.|+++|+||+|+.+.. +........+.. .++
T Consensus 71 ~~~~~---~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~----~~~- 138 (164)
T cd04101 71 NYWES---PSVFILVYDVSNKASFENC--SRWVNKVRTASKHMPGVLVGNKMDLADKA--EVTDAQAQAFAQ----ANQ- 138 (164)
T ss_pred HHhCC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECccccccc--CCCHHHHHHHHH----HcC-
Confidence 77766 8999999999987665332 233332 468999999999986542 122222222222 122
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.+++++||+++.|++++++++.+..
T Consensus 139 -~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 139 -LKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred -CeEEEEeCCCCCChHHHHHHHHHHh
Confidence 5799999999999999999998754
No 87
>PLN03108 Rab family protein; Provisional
Probab=99.90 E-value=3.9e-22 Score=151.39 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=112.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..+||+|+|++|+|||||+++|++..+.....++.+.+........++ .+.+|||+|. +.|..++..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~----------~~~~~~~~~ 74 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----------ESFRSITRS 74 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCc----------HHHHHHHHH
Confidence 468999999999999999999998766555555555544433333333 5778999883 345666777
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
+++. +|++|+|+|++++.++... ..|+. ..+.|+++|+||+|+... +....++.+++.+...
T Consensus 75 ~~~~---ad~~vlv~D~~~~~s~~~l--~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~----- 142 (210)
T PLN03108 75 YYRG---AAGALLVYDITRRETFNHL--ASWLEDARQHANANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHG----- 142 (210)
T ss_pred Hhcc---CCEEEEEEECCcHHHHHHH--HHHHHHHHHhcCCCCcEEEEEECccCccc--cCCCHHHHHHHHHHcC-----
Confidence 7777 8999999999987766543 12222 257899999999998653 2233344455544322
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+++++||+++.|++++|+++.+.+.+
T Consensus 143 -~~~~e~Sa~~~~~v~e~f~~l~~~~~~ 169 (210)
T PLN03108 143 -LIFMEASAKTAQNVEEAFIKTAAKIYK 169 (210)
T ss_pred -CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999876543
No 88
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.90 E-value=6.5e-23 Score=149.25 Aligned_cols=151 Identities=21% Similarity=0.285 Sum_probs=101.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757 41 EFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR 119 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (219)
+|+++|++|+|||||+++|.+.. +...+.++.+.+.... ...+..+.++||||.. .+..++..+++.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~-~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~~- 68 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF-EKGNLSFTAFDMSGQG----------KYRGLWEHYYKN- 68 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE-EECCEEEEEEECCCCH----------hhHHHHHHHHcc-
Confidence 58999999999999999999864 2344555555433211 1223468899999942 346677778777
Q ss_pred CCccEEEEEEeCCCCCCcccH--HHHHHh-----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCCC
Q 027757 120 ESLVGVLLLIDASVPPQKIDL--DCANWL-----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHHP 190 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~~--~~~~~~-----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 190 (219)
+|++|+|+|++++.+.... .+...+ ...++|+++|+||+|+.... ..+++.+.+... .....
T Consensus 69 --~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-------~~~~~~~~l~~~~~~~~~~ 139 (162)
T cd04157 69 --IQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-------TAVKITQLLGLENIKDKPW 139 (162)
T ss_pred --CCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-------CHHHHHHHhCCccccCceE
Confidence 8999999999987654221 111111 12479999999999986531 112222222111 11234
Q ss_pred CeEEeecCCCCChHHHHHHHHH
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
+++++||++|.|+++++++|.+
T Consensus 140 ~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 140 HIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred EEEEeeCCCCCchHHHHHHHhc
Confidence 6899999999999999999864
No 89
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.90 E-value=2.5e-22 Score=149.02 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
...+||+++|.+|+|||||++++....+ ..+.++.+.... .... +..+.+||+|| +..+..++..+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~-~~~~pt~g~~~~--~~~~~~~~~~i~D~~G----------q~~~~~~~~~~ 81 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEYKNISFTVWDVGG----------QDKIRPLWRHY 81 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCC-ccccCCcceeEE--EEEECCEEEEEEECCC----------CHHHHHHHHHH
Confidence 3458999999999999999999987543 334444443322 1222 33688999998 34567788888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PH 188 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 188 (219)
++. +|++|+|+|++++.+.... .+...+.. .++|+++|+||+|+.... ..+++.+.++... ..
T Consensus 82 ~~~---a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~-------~~~~~~~~l~l~~~~~~ 151 (181)
T PLN00223 82 FQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-------NAAEITDKLGLHSLRQR 151 (181)
T ss_pred hcc---CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC-------CHHHHHHHhCccccCCC
Confidence 888 8999999999987665432 12222222 478999999999986531 2334444443211 11
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+.++++||++|.|++++++||.+.+..
T Consensus 152 ~~~~~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 152 HWYIQSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred ceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 2245689999999999999999887654
No 90
>PRK15494 era GTPase Era; Provisional
Probab=99.90 E-value=2e-22 Score=162.83 Aligned_cols=162 Identities=23% Similarity=0.279 Sum_probs=110.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
...+|+++|.+|+|||||+|+|++. ....+++.+++|+... .+.. +.++.+|||||....... .+ ..+...
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~-l~----~~~~r~ 124 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS-LE----KAMVRC 124 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc-HH----HHHHHH
Confidence 3459999999999999999999997 4556677777776432 2222 447999999997532111 11 223333
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
.+.....+|++++|+|+.+.....+...+..+...+.|.++|+||+|+... ...+..+.+.... ....+++
T Consensus 125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~--------~~~~~~~~l~~~~-~~~~i~~ 195 (339)
T PRK15494 125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK--------YLNDIKAFLTENH-PDSLLFP 195 (339)
T ss_pred HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc--------cHHHHHHHHHhcC-CCcEEEE
Confidence 322234489999999988765554445566666667888999999998642 1233333333222 2257999
Q ss_pred eecCCCCChHHHHHHHHHHH
Q 027757 195 TSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~ 214 (219)
+||++|.|+++++++|.+.+
T Consensus 196 iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 196 ISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred EeccCccCHHHHHHHHHHhC
Confidence 99999999999999998764
No 91
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.90 E-value=4.3e-22 Score=144.71 Aligned_cols=154 Identities=20% Similarity=0.233 Sum_probs=103.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||+++|++..+.....+.............. ..+.+||+||. ..+..+...++
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~~~~ 70 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ----------ERYHALGPIYY 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCch----------HHHHHhhHHHh
Confidence 589999999999999999999875433333232222222222222 25789999983 34556677777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHH-H---HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDC-A---NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~---~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
.. +|++++|+|++++.+...... . ......++|+++|+||+|+... .....+...++.+.. ..++
T Consensus 71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~------~~~~ 139 (162)
T cd04123 71 RD---ADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ--RVVSKSEAEEYAKSV------GAKH 139 (162)
T ss_pred cc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc--cCCCHHHHHHHHHHc------CCEE
Confidence 66 899999999998766543311 1 1112247899999999998743 222233344443332 2578
Q ss_pred EEeecCCCCChHHHHHHHHHHH
Q 027757 193 IMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+++|++++.|++++++++.+.+
T Consensus 140 ~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 140 FETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred EEEeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999997754
No 92
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.90 E-value=1e-22 Score=149.51 Aligned_cols=158 Identities=18% Similarity=0.114 Sum_probs=105.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccc-ccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKEL-ALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
+.+||+++|.+|+|||||+++|++..+. ..+.++.+..........++ .+.++|++|.. .+..+..
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~----------~~~~~~~ 72 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDE----------VAILLND 72 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcc----------cccccch
Confidence 4679999999999999999999998665 55556555443333333333 46778888742 2234455
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhc-cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLG-RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
.+++. +|++++|+|++++.+.... .....+. ..++|+++|+||+|+.+... +.....+++.+.++ . ..
T Consensus 73 ~~~~~---~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~----~-~~ 142 (169)
T cd01892 73 AELAA---CDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ--RYEVQPDEFCRKLG----L-PP 142 (169)
T ss_pred hhhhc---CCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccc--ccccCHHHHHHHcC----C-CC
Confidence 66666 8999999999987554332 2222221 24799999999999865321 11122334433322 1 24
Q ss_pred eEEeecCCCCChHHHHHHHHHHHh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++||+++.|++++|+.+.+.+-
T Consensus 143 ~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 143 PLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred CEEEEeccCccHHHHHHHHHHHhh
Confidence 689999999999999999988653
No 93
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.90 E-value=7.9e-22 Score=143.64 Aligned_cols=162 Identities=28% Similarity=0.321 Sum_probs=112.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
..+|+++|++|+|||||+|+|++.. .+...+...++....... .+..+.++||||+...... ....+.......
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK--LGERMVKAAWSA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCc-eEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH--HHHHHHHHHHHH
Confidence 4689999999999999999999973 444444444444322221 1246899999997533211 111122233333
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
+.. +|++++|+|++++.+.........+...+.|+++|+||+|+... .....++.+.+....+ ..+++++
T Consensus 80 ~~~---~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------~~~~~~~~~~~~~~~~-~~~~~~~ 149 (168)
T cd04163 80 LKD---VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD------KEDLLPLLEKLKELGP-FAEIFPI 149 (168)
T ss_pred HHh---CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc------HHHHHHHHHHHHhccC-CCceEEE
Confidence 444 89999999999885555556666676678999999999998742 1344555555554433 3589999
Q ss_pred ecCCCCChHHHHHHHHHH
Q 027757 196 SSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~ 213 (219)
|++++.|+++++++|.+.
T Consensus 150 s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 150 SALKGENVDELLEEIVKY 167 (168)
T ss_pred EeccCCChHHHHHHHHhh
Confidence 999999999999999775
No 94
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=2.5e-22 Score=145.20 Aligned_cols=153 Identities=23% Similarity=0.257 Sum_probs=105.3
Q ss_pred EEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757 43 AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR 119 (219)
Q Consensus 43 ~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (219)
+++|.+|+|||||+|+|++.. .....+.++++...... ..+..+.++||||+..... .-...+......+++.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~- 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRR-DAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQAELAIEE- 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCc-EEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHh-
Confidence 479999999999999999973 44445556665543222 2234789999999864321 1111111222233344
Q ss_pred CCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757 120 ESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT 199 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 199 (219)
+|++++|+|+.++.+..+..+.+++...+.|+++|+||+|+..... . ...+.. .+. .+++++|+++
T Consensus 77 --~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~------~----~~~~~~-~~~-~~~~~~Sa~~ 142 (157)
T cd01894 77 --ADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEED------E----AAEFYS-LGF-GEPIPISAEH 142 (157)
T ss_pred --CCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHH------H----HHHHHh-cCC-CCeEEEeccc
Confidence 8999999999987777777777888888899999999999976421 1 111211 111 3789999999
Q ss_pred CCChHHHHHHHHHH
Q 027757 200 GLGRDELLLHMSQL 213 (219)
Q Consensus 200 ~~~v~el~~~l~~~ 213 (219)
+.|++++++++.+.
T Consensus 143 ~~gv~~l~~~l~~~ 156 (157)
T cd01894 143 GRGIGDLLDAILEL 156 (157)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999864
No 95
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.90 E-value=8.1e-22 Score=144.67 Aligned_cols=166 Identities=28% Similarity=0.364 Sum_probs=111.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHH-HH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFT-KG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~-~~ 114 (219)
.++|+++|.+|+|||||+|+|++.. .......++++... .... .+..+.+|||||+..........+.+.... ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEE-RVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc-ceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 5789999999999999999999973 33334444444332 1222 234689999999754321111112222111 12
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC--CCCCe
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHPPW 192 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 192 (219)
.+.. +|++++|+|+.++.+.........+...+.|+++++||+|+.+.. ....+...+.+...++ ...++
T Consensus 81 ~~~~---~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 152 (174)
T cd01895 81 AIER---ADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-----SKTMKEFKKEIRRKLPFLDYAPI 152 (174)
T ss_pred HHhh---cCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-----HHHHHHHHHHHHhhcccccCCce
Confidence 2333 899999999999887766666666666789999999999987642 1234444444444333 23689
Q ss_pred EEeecCCCCChHHHHHHHHHH
Q 027757 193 IMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~ 213 (219)
+++||+++.|++++++++.+.
T Consensus 153 ~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 153 VFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EEEeccCCCCHHHHHHHHHHh
Confidence 999999999999999998764
No 96
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.90 E-value=2.9e-22 Score=147.91 Aligned_cols=156 Identities=15% Similarity=0.137 Sum_probs=103.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
...+||+++|.+|+|||||++++....+. .+.++.+.... ... .+..+.++||||. ..+..++..+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~~~l~l~D~~G~----------~~~~~~~~~~ 77 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKNISFTVWDVGGQ----------DKIRPLWRHY 77 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECCEEEEEEECCCC----------hhhHHHHHHH
Confidence 34689999999999999999999765442 33333332221 222 2336889999984 3346677888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH-HHHH-Hhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL-DCAN-WLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPH 188 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~-~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 188 (219)
++. +|++|+|+|++++.+.... +.+. .+.. .+.|+++|+||+|+.+.. . .+++.+.++.. -..
T Consensus 78 ~~~---ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~----~---~~~i~~~~~~~~~~~~ 147 (175)
T smart00177 78 YTN---TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM----K---AAEITEKLGLHSIRDR 147 (175)
T ss_pred hCC---CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC----C---HHHHHHHhCccccCCC
Confidence 888 8999999999987654331 1121 2121 368999999999986431 1 12222222211 112
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
...++++||++|.|++++++||.+.+.
T Consensus 148 ~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 148 NWYIQPTCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred cEEEEEeeCCCCCCHHHHHHHHHHHhc
Confidence 235678999999999999999987653
No 97
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.90 E-value=8.7e-23 Score=150.44 Aligned_cols=154 Identities=15% Similarity=0.103 Sum_probs=103.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757 42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN 118 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~ 118 (219)
|+|+|++|+|||||+++|.+..+...+.+....... .....++ .+.+|||||. +.|..+...+++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQ----------EDYDRLRPLSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCC----------cccchhchhhcCC
Confidence 589999999999999999998655444444332222 2222223 5789999994 2334555666666
Q ss_pred cCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEccccccccc----------CCCchHhHHHHHHHHHh
Q 027757 119 RESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQLIRE 184 (219)
Q Consensus 119 ~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~ 184 (219)
+|++|+|+|++++.+..... ....+. ..+.|+++|+||+|+..... ..+..++.+++.+..+
T Consensus 70 ---~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 145 (174)
T smart00174 70 ---TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG- 145 (174)
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC-
Confidence 89999999999877665431 122222 25799999999999875321 1122233333333322
Q ss_pred cCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 185 NYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 185 ~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
..+++++||+++.|++++|+.+.+.+
T Consensus 146 ----~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 146 ----AVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred ----CcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 13789999999999999999998765
No 98
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.90 E-value=2.8e-22 Score=152.56 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=110.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
+.||+++|.+|+|||||+++|.+..+...+.++.+...... +..++ .+.+|||+| ++.|..+...+
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~-~~~~~~~v~L~iwDt~G----------~e~~~~l~~~~ 69 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTAS-FEIDKRRIELNMWDTSG----------SSYYDNVRPLA 69 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEE-EEECCEEEEEEEEeCCC----------cHHHHHHhHHh
Confidence 36899999999999999999999877666666665444322 22222 577889987 44567777888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEccccccccc----------CCCchHhHHHHHH
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQ 180 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~ 180 (219)
++. +|++|+|+|++++.++.... ..|.. ..+.|+++|+||+|+..... ..+..++.+.+.+
T Consensus 70 ~~~---~d~illvfdis~~~Sf~~i~-~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak 145 (222)
T cd04173 70 YPD---SDAVLICFDISRPETLDSVL-KKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK 145 (222)
T ss_pred ccC---CCEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH
Confidence 887 99999999999987765431 12222 25789999999999865311 1122333344433
Q ss_pred HHHhcCCCCCCeEEeecCCCCC-hHHHHHHHHHHH
Q 027757 181 LIRENYPHHPPWIMTSSVTGLG-RDELLLHMSQLR 214 (219)
Q Consensus 181 ~~~~~~~~~~~~~~~Sa~~~~~-v~el~~~l~~~~ 214 (219)
.++. .+|+++||+++.+ ++++|+......
T Consensus 146 ~~~~-----~~y~E~SAk~~~~~V~~~F~~~~~~~ 175 (222)
T cd04173 146 QVGA-----VSYVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred HcCC-----CEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence 3321 4899999999885 999999987754
No 99
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.90 E-value=3.2e-22 Score=145.45 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=99.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR 119 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (219)
.||+++|.+|+|||||++++....+. .+.++.+...... ......+.+|||||. ..+..++..+++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~-~~~~~~~~l~D~~G~----------~~~~~~~~~~~~~- 67 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV-EYKNISFTVWDVGGQ----------DKIRPLWRHYFQN- 67 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEE-EECCEEEEEEECCCC----------HhHHHHHHHHhcC-
Confidence 48999999999999999999765443 3444444322211 112346899999984 3356677888888
Q ss_pred CCccEEEEEEeCCCCCCcccHH--HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh--cCCCCCCe
Q 027757 120 ESLVGVLLLIDASVPPQKIDLD--CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE--NYPHHPPW 192 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 192 (219)
+|++|+|+|+++..+..... +...+.. .+.|+++++||+|+.+.. . .++..+.+.. .......+
T Consensus 68 --ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~---~~~i~~~~~~~~~~~~~~~~ 138 (159)
T cd04150 68 --TQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM----S---AAEVTDKLGLHSLRNRNWYI 138 (159)
T ss_pred --CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC----C---HHHHHHHhCccccCCCCEEE
Confidence 89999999999865543321 1122221 358999999999986421 1 1222222211 11223457
Q ss_pred EEeecCCCCChHHHHHHHHH
Q 027757 193 IMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~ 212 (219)
+++||++|.|++++++||.+
T Consensus 139 ~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 139 QATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred EEeeCCCCCCHHHHHHHHhc
Confidence 89999999999999999863
No 100
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.90 E-value=3.3e-22 Score=148.67 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=103.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
.+||+++|.+|+|||||++++....+.. ..++.+.+........ ...+.+|||||. +.+..++..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~~ 71 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ----------EKLRPLWKS 71 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCc----------HhHHHHHHH
Confidence 4799999999999999999999875432 2333332222212211 236889999983 344667777
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC-C
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP-H 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 188 (219)
+++. +|++|+|+|++++.+.... ++..+....++|+++|+||+|+... ...++.+.+... ..... .
T Consensus 72 ~~~~---~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~----~~~~~~~~~~~~-~~~~~~~ 143 (183)
T cd04152 72 YTRC---TDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA----LSVSEVEKLLAL-HELSAST 143 (183)
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc----CCHHHHHHHhCc-cccCCCC
Confidence 7777 8999999999986544322 1122223367999999999998642 112223322221 11111 1
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..+++++||+++.|+++++++|.+.+.
T Consensus 144 ~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 144 PWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 246889999999999999999987653
No 101
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.90 E-value=3.8e-22 Score=146.31 Aligned_cols=154 Identities=19% Similarity=0.235 Sum_probs=106.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||++++.+..+...+.++.+.... .....+ ..+.+|||||.. .|..+...++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTE----------QFTAMRELYI 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEeCCCcc----------cchhhhHHHH
Confidence 68999999999999999999987665555555543322 222222 367899999843 3456777777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHH-HHH----hccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDC-ANW----LGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~----~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+. ++++++|+|++++.+...... ... ....+.|+++++||+|+.... ....++...+.+. ++ ..+
T Consensus 71 ~~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~----~~-~~~ 140 (168)
T cd04177 71 KS---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR--QVSREDGVSLSQQ----WG-NVP 140 (168)
T ss_pred hh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC--ccCHHHHHHHHHH----cC-Cce
Confidence 77 899999999998765544321 111 123579999999999986542 2222333333332 22 258
Q ss_pred eEEeecCCCCChHHHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++++||+++.|++++|+++.+.+
T Consensus 141 ~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 141 FYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998654
No 102
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.90 E-value=1.6e-22 Score=149.01 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=104.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||+.++.+..+...+.++....... ....++ .+.+|||||. ..|..++..++
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~ 69 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSV-VVLVDGKPVRLQLCDTAGQ----------DEFDKLRPLCY 69 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEECCCC----------hhhcccccccc
Confidence 589999999999999999999876655554443211111 222332 5788999995 23344455566
Q ss_pred hccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEcccccccc----------cCCCchHhHHHHHHHH
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVA----------KGRRPDENIKSFQQLI 182 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~ 182 (219)
+. +|++|+|+|++++.++... ..+..+.. .+.|+++|+||+|+.... .+.+..++...+.+..
T Consensus 70 ~~---a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~ 146 (173)
T cd04130 70 PD---TDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI 146 (173)
T ss_pred CC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh
Confidence 66 8999999999998776543 12222222 468999999999986532 2344444444444433
Q ss_pred HhcCCCCCCeEEeecCCCCChHHHHHHHH
Q 027757 183 RENYPHHPPWIMTSSVTGLGRDELLLHMS 211 (219)
Q Consensus 183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~ 211 (219)
+ ..+++++||++|.|++++|+.+.
T Consensus 147 ~-----~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 147 G-----ACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred C-----CCeEEEEeCCCCCCHHHHHHHHH
Confidence 2 14899999999999999998775
No 103
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=3e-22 Score=149.99 Aligned_cols=158 Identities=23% Similarity=0.243 Sum_probs=103.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcc-----cccccCCCCeeEEeeE----EE-------------ecCeEEEEeCCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKE-----LALTSKKPGKTQLINH----FL-------------VNKSWYIVDLPGYGF 97 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~-----~~~~~~~~~~t~~~~~----~~-------------~~~~~~liDtpg~~~ 97 (219)
++|+++|++|+|||||+++|++... .......+++|..... +. .+..+.+|||||+.
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~- 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA- 79 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence 4799999999999999999997310 1111112233333211 11 13478999999962
Q ss_pred CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHH
Q 027757 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKS 177 (219)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~ 177 (219)
.+...++.....+|++++|+|+.++......+...+....+.|+++++||+|+......+ ...++
T Consensus 80 ------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~---~~~~~ 144 (192)
T cd01889 80 ------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERE---RKIEK 144 (192)
T ss_pred ------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHH---HHHHH
Confidence 344555555556899999999998765554444444444578999999999987532111 12233
Q ss_pred HHHHHHhc----CCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 178 FQQLIREN----YPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 178 ~~~~~~~~----~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
+.+.+... .....+++++||++|.|++++++++.+.
T Consensus 145 ~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 145 MKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred HHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence 33322221 1234789999999999999999999764
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.89 E-value=3.2e-22 Score=146.87 Aligned_cols=154 Identities=19% Similarity=0.163 Sum_probs=99.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR 119 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (219)
||+++|.+|+|||||+++|.+..+ ..+.++.+... .... .+..+.++||||.. .+...+..+++.
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~~~~T~~~~~--~~~~~~~~~i~l~Dt~G~~----------~~~~~~~~~~~~- 66 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-MQPIPTIGFNV--ETVEYKNLKFTIWDVGGKH----------KLRPLWKHYYLN- 66 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-CCcCCcCceeE--EEEEECCEEEEEEECCCCh----------hcchHHHHHhcc-
Confidence 689999999999999999998733 22333333222 2222 23478999999953 224456667776
Q ss_pred CCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 120 ESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
+|++++|+|++++.+..+. .+...+.. .+.|+++|+||+|+... ...++..++.+...........+++
T Consensus 67 --ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (169)
T cd04158 67 --TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA----LSVEEMTELLSLHKLCCGRSWYIQG 140 (169)
T ss_pred --CCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC----CCHHHHHHHhCCccccCCCcEEEEe
Confidence 8999999999987655332 11122211 35899999999998642 2223333322111100111236789
Q ss_pred eecCCCCChHHHHHHHHHHH
Q 027757 195 TSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~ 214 (219)
+||++|.|++++|+||.+.+
T Consensus 141 ~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 141 CDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred CcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
No 105
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.89 E-value=6.8e-22 Score=143.97 Aligned_cols=152 Identities=20% Similarity=0.296 Sum_probs=116.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
||+++|+.|+|||||+++|.+..+...+.++.+..........+. .+.+||++|. +.|..+...+++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~~~~~~~~~~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ----------ERFDSLRDIFYR 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS----------GGGHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccc----------cccccccccccc
Confidence 799999999999999999999877777777766555544444433 5889999873 455667778887
Q ss_pred ccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
. +|++|+++|++++.+..... .|+.. .+.|+++++||+|+... +++..++.+++.+.++ .+
T Consensus 71 ~---~~~~ii~fd~~~~~S~~~~~--~~~~~i~~~~~~~~~iivvg~K~D~~~~--~~v~~~~~~~~~~~~~------~~ 137 (162)
T PF00071_consen 71 N---SDAIIIVFDVTDEESFENLK--KWLEEIQKYKPEDIPIIVVGNKSDLSDE--REVSVEEAQEFAKELG------VP 137 (162)
T ss_dssp T---ESEEEEEEETTBHHHHHTHH--HHHHHHHHHSTTTSEEEEEEETTTGGGG--SSSCHHHHHHHHHHTT------SE
T ss_pred c---cccccccccccccccccccc--cccccccccccccccceeeecccccccc--ccchhhHHHHHHHHhC------CE
Confidence 7 89999999999987766543 44442 36899999999998873 4455556666665543 69
Q ss_pred eEEeecCCCCChHHHHHHHHHHHh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++||+++.|+.++|..+.+...
T Consensus 138 ~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 138 YFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp EEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999887653
No 106
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.89 E-value=1.1e-21 Score=142.85 Aligned_cols=154 Identities=18% Similarity=0.238 Sum_probs=104.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||+++++...+.....+........ ....+ ..+.++||||. ..+..+...++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~~~ 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEDVQLNILDTAGQ----------EDYAAIRDNYH 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEE-EEEECCEEEEEEEEECCCh----------hhhhHHHHHHh
Confidence 489999999999999999999875544444333222211 12222 25888999984 33456667777
Q ss_pred hccCCccEEEEEEeCCCCCCcccH-HHH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDL-DCA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+. +|++++|+|+.++.+.... ... .+.. ..++|+++|+||+|+.+. ..........+.+.++ .+
T Consensus 70 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~--~~~~~~~~~~~~~~~~------~~ 138 (164)
T cd04139 70 RS---GEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK--RQVSSEEAANLARQWG------VP 138 (164)
T ss_pred hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC------Ce
Confidence 77 8999999999876554322 111 1121 257999999999998752 1122233333333322 58
Q ss_pred eEEeecCCCCChHHHHHHHHHHHh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++||+++.|++++++++.+.+.
T Consensus 139 ~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 139 YVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987654
No 107
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.89 E-value=1.9e-21 Score=156.10 Aligned_cols=188 Identities=25% Similarity=0.322 Sum_probs=124.1
Q ss_pred cccccccccccceeeeeccCCCCCCCCCC--------------CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCee
Q 027757 10 VGPYAGHSQIKEVEFVKSSGRAKDCPKDD--------------RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT 75 (219)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t 75 (219)
+....+.....|..|..+..+.+.....+ ...|+|+|.+|||||||+|+|++.. +.+.+.+.+|
T Consensus 114 ~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT 191 (329)
T TIGR02729 114 VVAKGGRGGLGNAHFKSSTNRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTT 191 (329)
T ss_pred EecCCCCCCCCcccccCccCCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCc
Confidence 33466777777877877666555433222 3689999999999999999999863 4566666666
Q ss_pred EEeeEEE--ec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC---CCcccHH-HHHHhc
Q 027757 76 QLINHFL--VN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP---PQKIDLD-CANWLG 147 (219)
Q Consensus 76 ~~~~~~~--~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~-~~~~~~ 147 (219)
..+.... .+ ..+.++|+||+....... ..+...|++..+.+|++++|+|+++. ....+.. ..+.+.
T Consensus 192 ~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~ 265 (329)
T TIGR02729 192 LVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELK 265 (329)
T ss_pred cCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHH
Confidence 6543322 22 479999999975322111 12333444444558999999999975 2222221 222222
Q ss_pred c-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 148 R-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 148 ~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
. .++|+++|+||+|+.... ..+++.+.+...++ .+++++||+++.|+++++++|.+.+
T Consensus 266 ~~~~~l~~kp~IIV~NK~DL~~~~-------~~~~~~~~l~~~~~--~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 266 KYSPELAEKPRIVVLNKIDLLDEE-------ELAELLKELKKALG--KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HhhhhhccCCEEEEEeCccCCChH-------HHHHHHHHHHHHcC--CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 2 468999999999987541 23344444443332 5799999999999999999998765
No 108
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.89 E-value=1.3e-21 Score=143.42 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=103.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|++|+|||||++++.+..+.....++.+.......+...+ .+.++|+||. ..|+.....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~~ 75 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ----------ERFRSITQS 75 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHHH
Confidence 358999999999999999999997644444444443333222233332 4678999984 234556666
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHH----HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDC----ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~----~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++.. +|++++|+|++++.+...... +.++...+.|+++|+||+|+.... ....+..+ .+..... .
T Consensus 76 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~--~i~~~~~~----~~~~~~~--~ 144 (169)
T cd04114 76 YYRS---ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR--EVSQQRAE----EFSDAQD--M 144 (169)
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--ccCHHHHH----HHHHHcC--C
Confidence 7766 899999999987655432211 122233579999999999986532 12222222 2222222 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHH
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
+++++||++|.|++++++++.+.
T Consensus 145 ~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 145 YYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHH
Confidence 79999999999999999999875
No 109
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.89 E-value=2.8e-22 Score=147.72 Aligned_cols=156 Identities=14% Similarity=0.062 Sum_probs=103.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||+++|.+..+...+.++....... ....++ .+.+|||||... |..+...++
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~ 69 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQED----------YDRLRPLSY 69 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEeCCCccc----------ccccccccC
Confidence 489999999999999999999886555554444322221 222333 467899999532 223344555
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEccccccccc----------CCCchHhHHHHHHHH
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQLI 182 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~ 182 (219)
+. +|++++|+|+.++.++.... ....+. ..+.|+++|+||+|+.+... ..+..++...+.+.+
T Consensus 70 ~~---~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (174)
T cd04135 70 PM---TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI 146 (174)
T ss_pred CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 55 89999999999887755432 222222 36899999999999865321 122223333333322
Q ss_pred HhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+ . .+++++||++|.|++++|+.+.+.+
T Consensus 147 ~----~-~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 147 G----A-HCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred C----C-CEEEEecCCcCCCHHHHHHHHHHHh
Confidence 2 1 3689999999999999999987753
No 110
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=1.6e-21 Score=140.90 Aligned_cols=152 Identities=26% Similarity=0.301 Sum_probs=106.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
++|+++|++|+|||||++++++. ..+...+.++++..... ... +.++.++||||+...... ..+..++... ..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-~~~~~~~~~~-~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE-IEKIGIERAR-EAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch-HHHHHHHHHH-HHH
Confidence 48999999999999999999997 35555666666654322 222 347899999997543221 1111111222 223
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
. .+|++++|+|++++.+..+...... ..+.|+++|+||+|+.+.... .......+++++|
T Consensus 79 ~---~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~---------------~~~~~~~~~~~~S 138 (157)
T cd04164 79 E---EADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL---------------LSLLAGKPIIAIS 138 (157)
T ss_pred h---hCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc---------------ccccCCCceEEEE
Confidence 3 3799999999998777766544443 568999999999999764211 1122236899999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 027757 197 SVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 197 a~~~~~v~el~~~l~~~~ 214 (219)
|+++.|+++++++|.+.+
T Consensus 139 a~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 139 AKTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCCHHHHHHHHHHhh
Confidence 999999999999998765
No 111
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.89 E-value=3.3e-22 Score=145.36 Aligned_cols=151 Identities=19% Similarity=0.201 Sum_probs=98.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (219)
+|+++|++|+|||||+++|++..+. ...++.+.+...........+.++||||.. .+...+..++..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~~~~-- 67 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVGFNVEMLQLEKHLSLTVWDVGGQE----------KMRTVWKCYLEN-- 67 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc-cccCccCcceEEEEeCCceEEEEEECCCCH----------hHHHHHHHHhcc--
Confidence 5899999999999999999998543 333444332221111123478999999842 345556667766
Q ss_pred CccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHH--hcC-CCCCCe
Q 027757 121 SLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR--ENY-PHHPPW 192 (219)
Q Consensus 121 ~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~ 192 (219)
+|++|+|+|++++.+.... .+...+.. .+.|+++|+||+|+.... ..++....+. ... ....++
T Consensus 68 -~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~i~~~~~~~~~~~~~~~~~ 139 (160)
T cd04156 68 -TDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-------TAEEITRRFKLKKYCSDRDWYV 139 (160)
T ss_pred -CCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-------CHHHHHHHcCCcccCCCCcEEE
Confidence 8999999999987643332 12222221 579999999999986421 1122222221 111 123468
Q ss_pred EEeecCCCCChHHHHHHHHH
Q 027757 193 IMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~ 212 (219)
+++||++|.|+++++++|.+
T Consensus 140 ~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 140 QPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EecccccCCChHHHHHHHhc
Confidence 99999999999999999864
No 112
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.9e-22 Score=136.71 Aligned_cols=155 Identities=15% Similarity=0.225 Sum_probs=121.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
-+|++|+|+..+|||||+-+.++..+....-++.|.......+.... ++.+|||. +++.|+.+.-.|
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTa----------gqEryrtiTTay 90 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTA----------GQERYRTITTAY 90 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecc----------cchhhhHHHHHH
Confidence 46999999999999999999999877776666666554433222221 34555554 577899999999
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+|+ ++++|+++|+++..++... ..|.. ..+.|+++|+||||+.++ +.+..+....+.++++
T Consensus 91 yRg---amgfiLmyDitNeeSf~sv--qdw~tqIktysw~naqvilvgnKCDmd~e--Rvis~e~g~~l~~~LG------ 157 (193)
T KOG0093|consen 91 YRG---AMGFILMYDITNEESFNSV--QDWITQIKTYSWDNAQVILVGNKCDMDSE--RVISHERGRQLADQLG------ 157 (193)
T ss_pred hhc---cceEEEEEecCCHHHHHHH--HHHHHHheeeeccCceEEEEecccCCccc--eeeeHHHHHHHHHHhC------
Confidence 999 9999999999998776543 33443 378999999999999875 6677788888888877
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
..+|++||+.+.|++++|+.+.....+
T Consensus 158 fefFEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 158 FEFFETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred hHHhhhcccccccHHHHHHHHHHHHHH
Confidence 489999999999999999998776544
No 113
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.89 E-value=3.4e-22 Score=146.61 Aligned_cols=157 Identities=23% Similarity=0.272 Sum_probs=99.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEE-ecC-eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFL-VNK-SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~-~~~-~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+|+++|.+|+|||||+|+|.+.. ......++++... .... .+. .+.++||||+....... +.+...++
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~ 73 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL 73 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence 58999999999999999999863 2333344444332 2222 233 78999999974221110 11223333
Q ss_pred hccCCccEEEEEEeCCCC-CCcccHH-HHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 117 LNRESLVGVLLLIDASVP-PQKIDLD-CANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~-~~~~~~~-~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+....+|++++|+|++++ .+..... ..+.+.. .++|+++|+||+|+.+.. ...+....+.... ..
T Consensus 74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-------~~~~~~~~~~~~~-~~ 145 (170)
T cd01898 74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE-------ELFELLKELLKEL-WG 145 (170)
T ss_pred HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch-------hhHHHHHHHHhhC-CC
Confidence 433448999999999987 4443321 2222221 368999999999986542 1222222222211 13
Q ss_pred CCeEEeecCCCCChHHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.+++++||+++.|++++++++.++
T Consensus 146 ~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 146 KPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCEEEEecCCCCCHHHHHHHHHhh
Confidence 679999999999999999999865
No 114
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.89 E-value=5.6e-22 Score=153.53 Aligned_cols=155 Identities=12% Similarity=0.145 Sum_probs=106.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|.+|+|||||+++|++..+...+.++.+... ...+..++ .+.+|||+|.. .|..+...++
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~-~k~~~i~~~~~~l~I~Dt~G~~----------~~~~~~~~~~ 69 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFH-RKLYSIRGEVYQLDILDTSGNH----------PFPAMRRLSI 69 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhE-EEEEEECCEEEEEEEEECCCCh----------hhhHHHHHHh
Confidence 4899999999999999999998766555555544222 22233333 57799999842 2345566666
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-HHHHhc------------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLG------------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
.. +|++|+|+|+++..++.... ...++. ..++|+++|+||+|+... +++..+++.++. .
T Consensus 70 ~~---ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--~~v~~~ei~~~~---~ 141 (247)
T cd04143 70 LT---GDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--REVQRDEVEQLV---G 141 (247)
T ss_pred cc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--cccCHHHHHHHH---H
Confidence 66 89999999999877665432 222221 147899999999998753 223333333332 2
Q ss_pred hcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.. ..+.++++||+++.|++++|++|.+.+.
T Consensus 142 ~~--~~~~~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 142 GD--ENCAYFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred hc--CCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence 21 1367999999999999999999988653
No 115
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.89 E-value=1.5e-21 Score=142.22 Aligned_cols=155 Identities=22% Similarity=0.178 Sum_probs=96.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccccccc--CCCCeeEEee--EEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTS--KKPGKTQLIN--HFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~--~~~~~t~~~~--~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
.|+++|++|+|||||+++|++.. ..... ..++++.... .... +..+.+|||||.. .|......
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~----------~~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE-TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE----------KFIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc-cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH----------HHHHHHHh
Confidence 58999999999999999999752 11111 1223333322 1222 4578999999952 22222233
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-cEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeE
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-PLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI 193 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (219)
++.. +|++++|+|+++.........+..+...+. |+++|+||+|+...... ....+++.+.+........+++
T Consensus 71 ~~~~---ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 144 (164)
T cd04171 71 GAGG---IDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWL---ELVEEEIRELLAGTFLADAPIF 144 (164)
T ss_pred hhhc---CCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHH---HHHHHHHHHHHHhcCcCCCcEE
Confidence 3444 899999999987443333333333433344 99999999998753110 1112333333332211346899
Q ss_pred EeecCCCCChHHHHHHHHH
Q 027757 194 MTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 194 ~~Sa~~~~~v~el~~~l~~ 212 (219)
++||+++.|++++++++.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEeCCCCcCHHHHHHHHhh
Confidence 9999999999999998864
No 116
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=140.48 Aligned_cols=153 Identities=22% Similarity=0.244 Sum_probs=122.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..+||+++|.+|+|||||+-+|+...+......+.|.........+++ ++.+|||.| |++|+.+...
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG----------qErFRtLTpS 79 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG----------QERFRTLTPS 79 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc----------hHhhhccCHh
Confidence 358999999999999999999999876666666677766655555443 566777755 8889999999
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
||++ +.++|+|+|++..+++..+ --|+++ .++-.++|+||+|... .+.+..++-..+.+..+
T Consensus 80 yyRg---aqGiIlVYDVT~Rdtf~kL--d~W~~Eld~Ystn~diikmlVgNKiDkes--~R~V~reEG~kfAr~h~---- 148 (209)
T KOG0080|consen 80 YYRG---AQGIILVYDVTSRDTFVKL--DIWLKELDLYSTNPDIIKMLVGNKIDKES--ERVVDREEGLKFARKHR---- 148 (209)
T ss_pred Hhcc---CceeEEEEEccchhhHHhH--HHHHHHHHhhcCCccHhHhhhcccccchh--cccccHHHHHHHHHhhC----
Confidence 9999 8889999999998887654 445554 6677899999999765 36677777777777655
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
+-++++||++..|+...|+.+.+.
T Consensus 149 --~LFiE~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 149 --CLFIECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred --cEEEEcchhhhccHHHHHHHHHHH
Confidence 678999999999999999988764
No 117
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.89 E-value=4.6e-22 Score=146.73 Aligned_cols=157 Identities=14% Similarity=0.141 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
+.||+++|++|+|||||+++|.+..+...+.++.+..... ....+ ..+.+|||||.. .|..+...+
T Consensus 1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~ 69 (175)
T cd01870 1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE----------DYDRLRPLS 69 (175)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECCEEEEEEEEeCCCch----------hhhhccccc
Confidence 4689999999999999999999976555555554433221 22222 257899999952 223333444
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEcccccccccC----------CCchHhHHHHHHH
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAKG----------RRPDENIKSFQQL 181 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~~----------~~~~~~~~~~~~~ 181 (219)
+.. +|++++|+|+++..+..... ....+.. .+.|+++|+||+|+...... .+...+..++.+.
T Consensus 70 ~~~---~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~ 146 (175)
T cd01870 70 YPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANK 146 (175)
T ss_pred cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHH
Confidence 444 89999999999876544321 1111222 47899999999998653211 1111222222222
Q ss_pred HHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 182 IRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 182 ~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.+ ..+++++||++|.|++++|+++.+.+
T Consensus 147 ----~~-~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 147 ----IG-AFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ----cC-CcEEEEeccccCcCHHHHHHHHHHHh
Confidence 11 24799999999999999999998764
No 118
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.89 E-value=8.1e-22 Score=143.11 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=101.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|+.|+|||||+.+++...+.....+..+ .. ......++ .+.+|||+|-.. ..++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~---------------~~~~ 63 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD---------------AQFA 63 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc---------------hhHH
Confidence 4899999999999999999987755544433322 11 12223333 478899998531 1234
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-HHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+. +|++++|+|+++..++.... .+..+.. .+.|+++|+||+|+.....+++..++.+++.+... .++
T Consensus 64 ~~---~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~-----~~~ 135 (158)
T cd04103 64 SW---VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMK-----RCS 135 (158)
T ss_pred hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhC-----CCc
Confidence 44 89999999999988877632 2222221 46899999999998643334455555555544322 268
Q ss_pred eEEeecCCCCChHHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
++++||+++.|++++|+.+.+.
T Consensus 136 ~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 136 YYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 9999999999999999988753
No 119
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=8.2e-22 Score=144.28 Aligned_cols=158 Identities=16% Similarity=0.078 Sum_probs=100.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC-eeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPG-KTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN 118 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~ 118 (219)
.||+++|.+|+|||||+++|.+..+...+..... .+........+..+.+|||||... +...+..++..
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~ 70 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQ----------DRANLAAEIRK 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchh----------hhHHHhhhccc
Confidence 3899999999999999999999765443222111 111111111233688999999531 12233444444
Q ss_pred cCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 119 RESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 119 ~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
+|++++|+|++++.+..... ....+. ..+.|+++|+||+|+.+........+....+...+. ...++++
T Consensus 71 ---ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~e 143 (166)
T cd01893 71 ---ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFR----EIETCVE 143 (166)
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHh----cccEEEE
Confidence 89999999999877765421 112122 247899999999999764321111122222222222 1137999
Q ss_pred eecCCCCChHHHHHHHHHHH
Q 027757 195 TSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~ 214 (219)
+||+++.|++++|+.+.+.+
T Consensus 144 ~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 144 CSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred eccccccCHHHHHHHHHHHh
Confidence 99999999999999988764
No 120
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.2e-21 Score=165.16 Aligned_cols=160 Identities=22% Similarity=0.254 Sum_probs=116.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+|+|.+|+|||||+|+|++. ..+.+.+.+++|++..... .+..+.+|||||+.... ..-...+......
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~ 113 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEV 113 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHH
Confidence 3589999999999999999999997 4566677888877644332 24478999999975211 1122233444455
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
++.. +|++|+|+|++++.+..+..+..++...++|+++|+||+|+.... .+..++ ....++ ..++
T Consensus 114 ~~~~---aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~------~~~~~~---~~~g~~---~~~~ 178 (472)
T PRK03003 114 AMRT---ADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGE------ADAAAL---WSLGLG---EPHP 178 (472)
T ss_pred HHHh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccc------hhhHHH---HhcCCC---CeEE
Confidence 6666 899999999999888777778888888899999999999986421 111111 111111 3479
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q 027757 195 TSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+||++|.|++++++++.+.+.
T Consensus 179 iSA~~g~gi~eL~~~i~~~l~ 199 (472)
T PRK03003 179 VSALHGRGVGDLLDAVLAALP 199 (472)
T ss_pred EEcCCCCCcHHHHHHHHhhcc
Confidence 999999999999999987653
No 121
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.89 E-value=1.4e-21 Score=149.31 Aligned_cols=153 Identities=15% Similarity=0.089 Sum_probs=101.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccc-ccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKEL-ALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~-~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
+||+++|++|+|||||+++|++..+. ..+.++.+.......... ...+.+|||||.. ......+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~------------~~~~~~~ 68 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE------------MWTEDSC 68 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc------------hHHHhHH
Confidence 58999999999999999999876444 334444332222222222 3368899999963 1122333
Q ss_pred hh-ccCCccEEEEEEeCCCCCCcccH-HHHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 116 FL-NRESLVGVLLLIDASVPPQKIDL-DCANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 116 ~~-~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+. . +|++++|+|++++.++... ..+..+.. .+.|+++|+||+|+.... .+..++...+... + .
T Consensus 69 ~~~~---ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~--~v~~~~~~~~a~~----~--~ 137 (221)
T cd04148 69 MQYQ---GDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR--EVSVQEGRACAVV----F--D 137 (221)
T ss_pred hhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccc--eecHHHHHHHHHH----c--C
Confidence 33 4 8999999999997665432 12222222 578999999999987542 2222333333222 2 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++++||+++.|++++++++.+.+.
T Consensus 138 ~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 138 CKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999999988765
No 122
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.89 E-value=9e-22 Score=148.14 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=102.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
||+++|.+|+|||||+++|++..+...+.++....... .+..++ .+.++|+||.. .|..+...++.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~~~ 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRK-EYEVGGVSLTLDILDTSGSY----------SFPAMRKLSIQ 69 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeE-EEEECCEEEEEEEEECCCch----------hhhHHHHHHhh
Confidence 68999999999999999999876554444443322222 222223 67899999842 23445566666
Q ss_pred ccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
. +|++|+|+|++++.+..... +.......++|+++|+||+|+.... ..+..+...+. ... ....++
T Consensus 70 ~---ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~-~~v~~~~~~~~---~~~--~~~~~~ 140 (198)
T cd04147 70 N---SDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE-RQVPAKDALST---VEL--DWNCGF 140 (198)
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc-ccccHHHHHHH---HHh--hcCCcE
Confidence 6 89999999999876654331 1122223579999999999986531 11212222211 111 112578
Q ss_pred EEeecCCCCChHHHHHHHHHHHh
Q 027757 193 IMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++||++|.|++++++++.+.+.
T Consensus 141 ~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 141 VETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred EEecCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999987653
No 123
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.88 E-value=1.6e-21 Score=144.38 Aligned_cols=154 Identities=23% Similarity=0.260 Sum_probs=101.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc-------ccccccC------CCCeeEEeeEEE--------ecCeEEEEeCCCCCCCC
Q 027757 41 EFAILGRSNVGKSSLINALVRKK-------ELALTSK------KPGKTQLINHFL--------VNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~-------~~~~~~~------~~~~t~~~~~~~--------~~~~~~liDtpg~~~~~ 99 (219)
+|+++|.+|+|||||+++|++.. +...+.+ ..+.+....... .+..+.+|||||..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~--- 78 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV--- 78 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh---
Confidence 68999999999999999999742 1111111 123333221111 12257899999963
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ 179 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 179 (219)
.|......+++. +|++|+|+|++++.+..+...+..+...++|+++|+||+|+.... .....+++.
T Consensus 79 -------~~~~~~~~~~~~---ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~----~~~~~~~~~ 144 (179)
T cd01890 79 -------DFSYEVSRSLAA---CEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD----PERVKQQIE 144 (179)
T ss_pred -------hhHHHHHHHHHh---cCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC----HHHHHHHHH
Confidence 234556667776 899999999998776665554555555789999999999986421 111122333
Q ss_pred HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+.++ . ...+++++||++|.|++++++++.+.+
T Consensus 145 ~~~~--~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 145 DVLG--L-DPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHhC--C-CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 3222 1 123589999999999999999998753
No 124
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.88 E-value=1.5e-21 Score=141.02 Aligned_cols=151 Identities=24% Similarity=0.260 Sum_probs=105.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+||+++|++|+|||||++++.+........++.+.+........ ...+.++|+||. ..+......++
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~ 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ----------ERFRSITPSYY 70 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh----------HHHHHHHHHHh
Confidence 58999999999999999999998554444555555554443432 246889999994 33455666776
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
.. +|++++|+|++++.+..... ....+.. ...|+++++||+|+... .....++..++... ...++
T Consensus 71 ~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~------~~~~~ 139 (159)
T cd00154 71 RG---AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ--RQVSTEEAQQFAKE------NGLLF 139 (159)
T ss_pred cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc--ccccHHHHHHHHHH------cCCeE
Confidence 66 89999999999855433321 2222222 45999999999999622 11223334443332 23689
Q ss_pred EEeecCCCCChHHHHHHHH
Q 027757 193 IMTSSVTGLGRDELLLHMS 211 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~ 211 (219)
+++|++++.|+++++++|.
T Consensus 140 ~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 140 FETSAKTGENVEELFQSLA 158 (159)
T ss_pred EEEecCCCCCHHHHHHHHh
Confidence 9999999999999999885
No 125
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=2.7e-21 Score=169.95 Aligned_cols=170 Identities=25% Similarity=0.313 Sum_probs=121.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--E-EecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--F-LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~-~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+|+|++. ......+.+++|.+... + ..+..+.++||||+........+.+.|..+..
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHH
Confidence 34689999999999999999999997 34455667777765422 2 23447889999997543333334444443322
Q ss_pred -HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCC
Q 027757 114 -GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHP 190 (219)
Q Consensus 114 -~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 190 (219)
.+++. +|++++|+|++++.+..+......+...++|+++|+||+|+.+.. ..+.+.+.+...+ ....
T Consensus 527 ~~~i~~---advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~-------~~~~~~~~~~~~l~~~~~~ 596 (712)
T PRK09518 527 QAAIER---SELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEF-------RRQRLERLWKTEFDRVTWA 596 (712)
T ss_pred HHHhhc---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChh-------HHHHHHHHHHHhccCCCCC
Confidence 23444 899999999999988888777777777789999999999997531 1222333332221 2235
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+++++||++|.|++++++.+.+....+
T Consensus 597 ~ii~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 597 RRVNLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 789999999999999999999887654
No 126
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.88 E-value=9.8e-22 Score=142.59 Aligned_cols=150 Identities=21% Similarity=0.220 Sum_probs=102.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (219)
||+++|.+|+|||||++++++.. .....++.+.+..... ..+..+.+||+||.. .+...+..++..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~i~D~~G~~----------~~~~~~~~~~~~-- 66 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVE-YKNVSFTVWDVGGQD----------KIRPLWKHYYEN-- 66 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEE-ECCEEEEEEECCCCh----------hhHHHHHHHhcc--
Confidence 68999999999999999999984 4444444443332211 123478999999943 335566677766
Q ss_pred CccEEEEEEeCCCCCCcccH-HHH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCCCCeE
Q 027757 121 SLVGVLLLIDASVPPQKIDL-DCA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHHPPWI 193 (219)
Q Consensus 121 ~~d~vi~v~d~~~~~~~~~~-~~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 193 (219)
+|++++|+|++++.+.... ..+ .... ..+.|+++|+||+|+.... ..++..+.+... .....+++
T Consensus 67 -~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 138 (158)
T cd00878 67 -TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-------SVSELIEKLGLEKILGRRWHIQ 138 (158)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-------CHHHHHHhhChhhccCCcEEEE
Confidence 8999999999987544332 111 1111 3579999999999987542 223333333321 22346899
Q ss_pred EeecCCCCChHHHHHHHHH
Q 027757 194 MTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 194 ~~Sa~~~~~v~el~~~l~~ 212 (219)
++||++|.|+++++++|..
T Consensus 139 ~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 139 PCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred EeeCCCCCCHHHHHHHHhh
Confidence 9999999999999998864
No 127
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=158.51 Aligned_cols=159 Identities=30% Similarity=0.295 Sum_probs=118.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE--ec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL--VN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
-++++|+|.||+|||||+|+|++. +.+.+++.+|||++.-+.. .+ .++.++||.|+..+.. ...++-.+ ..
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d-~VE~iGIe----Rs 290 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDD-VVERIGIE----RA 290 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCcc-HHHHHHHH----HH
Confidence 479999999999999999999998 7999999999999875443 33 3899999999974422 22211111 11
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
....+.||.+++|+|++.+....+..... ....++|+++|+||.|+..... .... ......+++.+
T Consensus 291 ~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~-------~~~~------~~~~~~~~i~i 356 (454)
T COG0486 291 KKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE-------LESE------KLANGDAIISI 356 (454)
T ss_pred HHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccc-------cchh------hccCCCceEEE
Confidence 22244489999999999987776666555 4556899999999999987521 1111 11222478999
Q ss_pred ecCCCCChHHHHHHHHHHHhhh
Q 027757 196 SSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
|++++.|+++|.+.|.+.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999999877653
No 128
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.88 E-value=1.3e-21 Score=139.53 Aligned_cols=140 Identities=22% Similarity=0.197 Sum_probs=92.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (219)
||+++|++|+|||||+|+|.+..+ ...++ .... .. ..++||||... ..+..|..+.. .++.
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t----~~~~---~~--~~~iDt~G~~~-----~~~~~~~~~~~-~~~~-- 62 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKT----QAVE---YN--DGAIDTPGEYV-----ENRRLYSALIV-TAAD-- 62 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc--ccccc----eeEE---Ec--CeeecCchhhh-----hhHHHHHHHHH-Hhhc--
Confidence 899999999999999999998742 11111 1111 11 15899999521 11222344433 3445
Q ss_pred CccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCC
Q 027757 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTG 200 (219)
Q Consensus 121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 200 (219)
+|++|+|+|++++.+......... ...|+++|+||+|+.+. ....+..+++.+... ..+++++||+++
T Consensus 63 -ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~ 130 (142)
T TIGR02528 63 -ADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEA---DVDIERAKELLETAG-----AEPIFEISSVDE 130 (142)
T ss_pred -CCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCc---ccCHHHHHHHHHHcC-----CCcEEEEecCCC
Confidence 899999999999888765433332 24599999999998642 122233333333321 147899999999
Q ss_pred CChHHHHHHHH
Q 027757 201 LGRDELLLHMS 211 (219)
Q Consensus 201 ~~v~el~~~l~ 211 (219)
.|++++++++.
T Consensus 131 ~gi~~l~~~l~ 141 (142)
T TIGR02528 131 QGLEALVDYLN 141 (142)
T ss_pred CCHHHHHHHHh
Confidence 99999999874
No 129
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.88 E-value=1.6e-21 Score=146.43 Aligned_cols=147 Identities=16% Similarity=0.262 Sum_probs=106.2
Q ss_pred EcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCC
Q 027757 45 LGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRES 121 (219)
Q Consensus 45 ~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (219)
+|..|+|||||+++++...+...+.++.+.+.....+..+ ..+.+|||+| ++.|..++..|++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G----------~e~~~~l~~~~~~~--- 67 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAG----------QEKFGGLRDGYYIQ--- 67 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCC----------chhhhhhhHHHhcC---
Confidence 6999999999999999876666666666655543333332 3688999988 34567788889888
Q ss_pred ccEEEEEEeCCCCCCcccHHHHHHhc---c--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 122 LVGVLLLIDASVPPQKIDLDCANWLG---R--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 122 ~d~vi~v~d~~~~~~~~~~~~~~~~~---~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
+|++|+|+|+++..+..... .|+. + .++|+++|+||+|+... .+..+.. .+.+. ..++++++|
T Consensus 68 ad~~ilV~D~t~~~S~~~i~--~w~~~i~~~~~~~piilvgNK~Dl~~~---~v~~~~~-~~~~~------~~~~~~e~S 135 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDVKDR---KVKAKSI-TFHRK------KNLQYYDIS 135 (200)
T ss_pred CCEEEEEEECCChHHHHHHH--HHHHHHHHhCCCCCEEEEEECcccccc---cCCHHHH-HHHHH------cCCEEEEEe
Confidence 89999999999987765432 2333 2 57899999999998642 2222221 22221 126899999
Q ss_pred cCCCCChHHHHHHHHHHHhh
Q 027757 197 SVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 197 a~~~~~v~el~~~l~~~~~~ 216 (219)
|++|.|++++|++|.+.+..
T Consensus 136 Ak~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 136 AKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999876543
No 130
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.88 E-value=1.6e-21 Score=145.08 Aligned_cols=154 Identities=21% Similarity=0.268 Sum_probs=103.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
...++|+++|.+|+|||||++++.+.. ...+.++.+.+. .... .+.++.++|+||.. .++..+..+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~-~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~ 81 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDR-LAQHQPTQHPTS--EELAIGNIKFTTFDLGGHQ----------QARRLWKDY 81 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccccce--EEEEECCEEEEEEECCCCH----------HHHHHHHHH
Confidence 446899999999999999999999874 333333333222 2222 23478899999952 235667777
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH--HHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC----
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL--DCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY---- 186 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---- 186 (219)
+.. +|++|+|+|++++.+.... .+.+.+. ..+.|+++|+||+|+... ...+ ++.+.++...
T Consensus 82 ~~~---ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~----~~~~---~i~~~l~l~~~~~~ 151 (184)
T smart00178 82 FPE---VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA----ASED---ELRYALGLTNTTGS 151 (184)
T ss_pred hCC---CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC----CCHH---HHHHHcCCCccccc
Confidence 777 8999999999986544322 1222222 257899999999998532 1223 3333332111
Q ss_pred -----CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 187 -----PHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 187 -----~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.....++++||+++.|++++++||.+.
T Consensus 152 ~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 152 KGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 123469999999999999999999754
No 131
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.88 E-value=3.5e-21 Score=145.54 Aligned_cols=157 Identities=24% Similarity=0.277 Sum_probs=100.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEE-ecC-eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFL-VNK-SWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~-~~~-~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
...++|+|+|++|+|||||+|++++.... ....+..+... .... .+. .+.+|||||+..... ......|....
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~ 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVY--AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP-HQLVEAFRSTL 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhc--cCCccceeccceeEEEEecCCceEEEeCCCccccCCC-HHHHHHHHHHH
Confidence 55789999999999999999999997422 12222222221 1111 233 799999999743211 11112222222
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccH----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDL----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
. .+. .+|++++|+|++++.+..+. ..+..+...++|+++|+||+|+.+.. ... ... ...
T Consensus 116 ~-~~~---~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~-------~~~---~~~---~~~ 178 (204)
T cd01878 116 E-EVA---EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE-------ELE---ERL---EAG 178 (204)
T ss_pred H-HHh---cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH-------HHH---HHh---hcC
Confidence 2 223 37999999999987665443 22233333578999999999997642 111 111 122
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
..+++++||+++.|+++++++|.+.
T Consensus 179 ~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 179 RPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhh
Confidence 3689999999999999999998764
No 132
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.88 E-value=1.5e-21 Score=144.01 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=102.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...+|+++|++|+|||||++++++..+. ...++.+.+.. .... +..+.++|+||.. .+...+..++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~ 80 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVV-HTSPTIGSNVE--EIVYKNIRFLMWDIGGQE----------SLRSSWNTYY 80 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccceE--EEEECCeEEEEEECCCCH----------HHHHHHHHHh
Confidence 3579999999999999999999876443 34444443332 2222 3478999999952 3455566777
Q ss_pred hccCCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 189 (219)
+. +|++|+|+|++++.+.... .+...+.. .++|+++++||+|+... . ..++..+.+.... ...
T Consensus 81 ~~---~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~----~---~~~~i~~~l~~~~~~~~~ 150 (174)
T cd04153 81 TN---TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA----M---TPAEISESLGLTSIRDHT 150 (174)
T ss_pred hc---CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC----C---CHHHHHHHhCcccccCCc
Confidence 66 8999999999987554321 12222222 46899999999998642 1 1222333332111 123
Q ss_pred CCeEEeecCCCCChHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
++++++||++|.|+++++++|.+
T Consensus 151 ~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 151 WHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred eEEEecccCCCCCHHHHHHHHhc
Confidence 57899999999999999999864
No 133
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.88 E-value=7.2e-22 Score=144.38 Aligned_cols=153 Identities=16% Similarity=0.185 Sum_probs=101.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
||+++|++|+|||||+++++...+...+.++..... ......++ .+.+|||||..... ......+++
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~ 70 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQAD---------TEQLERSIR 70 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccc---------cchHHHHHH
Confidence 589999999999999999998655444444432222 12222333 47799999964210 112344555
Q ss_pred ccCCccEEEEEEeCCCCCCcccHHH-HHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLDC-ANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
. +|++|+|+|++++.++..... ..++. ..+.|+++|+||+|+... ..+..++...+.+..+ .+
T Consensus 71 ~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~------~~ 139 (165)
T cd04146 71 W---ADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTEEGEKLASELG------CL 139 (165)
T ss_pred h---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHHHHHHHHHHcC------CE
Confidence 5 899999999999877654321 22222 247999999999998643 2223333444443322 58
Q ss_pred eEEeecCCCC-ChHHHHHHHHHHH
Q 027757 192 WIMTSSVTGL-GRDELLLHMSQLR 214 (219)
Q Consensus 192 ~~~~Sa~~~~-~v~el~~~l~~~~ 214 (219)
++++||+++. |++++|+.+.+..
T Consensus 140 ~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 140 FFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred EEEeCCCCCchhHHHHHHHHHHHH
Confidence 9999999995 9999999998754
No 134
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.88 E-value=3.3e-22 Score=137.22 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=119.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC--CCCCCCcchhhhHHHHHHHHh
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY--GFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~--~~~~~~~~~~~~~~~~~~~~~ 116 (219)
.++.+|+|.+|+|||||+.+|....|...+..+.|. +.++..+|.||. ..++|++.|++.|+.+...|+
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGv---------DfkirTv~i~G~~VkLqIwDtAGqErFrtitstyy 78 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGV---------DFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYY 78 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeee---------eEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHc
Confidence 467899999999999999999986444433333333 334445566663 346677778999999999999
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
++ .+++++|+|+++++++.+. .+|+.+ ..+|-++|+||+|.... +.+..++...+....+ +.
T Consensus 79 rg---thgv~vVYDVTn~ESF~Nv--~rWLeei~~ncdsv~~vLVGNK~d~~~R--rvV~t~dAr~~A~~mg------ie 145 (198)
T KOG0079|consen 79 RG---THGVIVVYDVTNGESFNNV--KRWLEEIRNNCDSVPKVLVGNKNDDPER--RVVDTEDARAFALQMG------IE 145 (198)
T ss_pred cC---CceEEEEEECcchhhhHhH--HHHHHHHHhcCccccceecccCCCCccc--eeeehHHHHHHHHhcC------ch
Confidence 99 8999999999999988653 567775 67899999999998764 4455555666655443 78
Q ss_pred eEEeecCCCCChHHHHHHHHHHHh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+|++|+++..|++..|..|.+++-
T Consensus 146 ~FETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 146 LFETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred heehhhhhcccchHHHHHHHHHHH
Confidence 999999999999999999987543
No 135
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.88 E-value=3.3e-21 Score=142.87 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE--ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL--VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
.||+++|.+|+|||||++++.+..+.....++........... ....+.++||||.. .|..+...++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~ 71 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD----------EYSILPQKYSI 71 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChH----------hhHHHHHHHHh
Confidence 5899999999999999999998754443433332111111111 12357899999842 34455666666
Q ss_pred ccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
. +|++++++|+++..+..... +.+.....+.|+++|+||+|+...+ .....+...+.+.+. .++
T Consensus 72 ~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~------~~~ 140 (180)
T cd04137 72 G---IHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR--QVSTEEGKELAESWG------AAF 140 (180)
T ss_pred h---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC--ccCHHHHHHHHHHcC------CeE
Confidence 6 89999999999865544321 1122223578999999999986532 222223333333222 589
Q ss_pred EEeecCCCCChHHHHHHHHHHHhhh
Q 027757 193 IMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+++||+++.|+.++++++.+.+...
T Consensus 141 ~~~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 141 LESSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999876654
No 136
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.88 E-value=5.3e-22 Score=148.17 Aligned_cols=159 Identities=26% Similarity=0.314 Sum_probs=109.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccccc----------------ccCCCCeeEE---eeEE--EecCeEEEEeCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELAL----------------TSKKPGKTQL---INHF--LVNKSWYIVDLPGYGF 97 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~t~~---~~~~--~~~~~~~liDtpg~~~ 97 (219)
..+|+++|+.++|||||+++|++...... .....+.+.. .... ..+..+.++||||+.
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~- 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE- 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-
Confidence 46899999999999999999997531100 0011122221 1222 234479999999962
Q ss_pred CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHH
Q 027757 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKS 177 (219)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~ 177 (219)
.+.....+....+|++|+|+|+.++......+.+..+...++|+++|+||+|+...+ ..+..++
T Consensus 82 ------------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~----~~~~~~~ 145 (188)
T PF00009_consen 82 ------------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKE----LEEIIEE 145 (188)
T ss_dssp ------------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHH----HHHHHHH
T ss_pred ------------ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhh----HHHHHHH
Confidence 233444445556999999999999988888888999999999999999999998321 1222333
Q ss_pred HHHHHHhcCC----CCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 178 FQQLIRENYP----HHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 178 ~~~~~~~~~~----~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+.+.+..... ..++++++||.+|.|+++|++.|.+.+
T Consensus 146 ~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 146 IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 3323321121 146899999999999999999998764
No 137
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.88 E-value=8.1e-22 Score=144.70 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=99.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
+||+++|++|+|||||+++|++..+.....++............ ...+.++||||... +..+...+++
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~----------~~~~~~~~~~ 70 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE----------YDRLRPLSYP 70 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc----------ccccchhhcC
Confidence 58999999999999999999998653433333322221111111 22588999999542 1223344444
Q ss_pred ccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEcccccccccCC---------CchHhHHHHHHHHHh
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAKGR---------RPDENIKSFQQLIRE 184 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~ 184 (219)
. +|++++|+|++++.+..... ....+.. .++|+++|+||+|+....... +..+...++...
T Consensus 71 ~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~--- 144 (171)
T cd00157 71 N---TDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE--- 144 (171)
T ss_pred C---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH---
Confidence 4 89999999999866654421 2222222 469999999999987654321 112222222222
Q ss_pred cCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757 185 NYPHHPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 185 ~~~~~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
++. .+++++||+++.|++++++++.+
T Consensus 145 -~~~-~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 -IGA-IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred -hCC-eEEEEeecCCCCCHHHHHHHHhh
Confidence 221 38999999999999999999875
No 138
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.88 E-value=2e-21 Score=141.05 Aligned_cols=149 Identities=17% Similarity=0.163 Sum_probs=98.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR 119 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (219)
||+++|++|+|||||++++....+. ...++.+.+.. ... .+..+.++||||.. .++.++..++..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~~- 66 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTYKNLKFQVWDLGGQT----------SIRPYWRCYYSN- 66 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEECCEEEEEEECCCCH----------HHHHHHHHHhcC-
Confidence 6899999999999999999876432 33333322221 121 23468899999952 345667777777
Q ss_pred CCccEEEEEEeCCCCCCccc--HHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCCCCe
Q 027757 120 ESLVGVLLLIDASVPPQKID--LDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHHPPW 192 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 192 (219)
+|++|+|+|++++.+... ..+...+.. .++|+++|+||+|+.... ...+....+... .....++
T Consensus 67 --~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-------~~~~i~~~~~~~~~~~~~~~~ 137 (158)
T cd04151 67 --TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-------SEAEISEKLGLSELKDRTWSI 137 (158)
T ss_pred --CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-------CHHHHHHHhCccccCCCcEEE
Confidence 899999999987644322 122222222 478999999999986431 122222222211 1112469
Q ss_pred EEeecCCCCChHHHHHHHHH
Q 027757 193 IMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~ 212 (219)
+++||++|.|+++++++|.+
T Consensus 138 ~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 138 FKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred EEeeccCCCCHHHHHHHHhc
Confidence 99999999999999999865
No 139
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.88 E-value=1.1e-21 Score=143.61 Aligned_cols=154 Identities=22% Similarity=0.203 Sum_probs=97.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccc---cccCCCCeeE--EeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELA---LTSKKPGKTQ--LINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~---~~~~~~~~t~--~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
+|+++|++|+|||||+++|++.. .. ........+. ....+.. +..+.++||||.. .+..+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 69 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLF-SKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE----------SLRSLWDK 69 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhc-ccccCCcccccCCccccceEEEEECCEEEEEEECCCCh----------hhHHHHHH
Confidence 58999999999999999998752 21 0011111111 1122222 3478999999953 24555666
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccH-HHHH-Hhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc-CCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDL-DCAN-WLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN-YPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~-~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 188 (219)
++.. +|++++|+|++++.+.... ..+. .+. ..++|+++++||+|+.... ...+..++....... ...
T Consensus 70 ~~~~---~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~----~~~~~~~~~~~~~~~~~~~ 142 (167)
T cd04160 70 YYAE---CHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL----SVEEIKEVFQDKAEEIGRR 142 (167)
T ss_pred HhCC---CCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC----CHHHHHHHhccccccccCC
Confidence 7766 8999999999876543321 1111 111 2579999999999986531 122233332222111 112
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
..+++++||++|.|++++++||.+
T Consensus 143 ~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 143 DCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ceEEEEeeCCCCcCHHHHHHHHhc
Confidence 357999999999999999999864
No 140
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.88 E-value=2e-21 Score=145.27 Aligned_cols=156 Identities=22% Similarity=0.281 Sum_probs=102.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...+|+++|++|+|||||++++.+..+ ..+.++.+.+. ..... +..+.++|+||.. .+...+..++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~----------~~~~~~~~~~ 84 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPTS--EELTIGNIKFKTFDLGGHE----------QARRLWKDYF 84 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcce--EEEEECCEEEEEEECCCCH----------HHHHHHHHHh
Confidence 368999999999999999999998643 33444333222 22222 3467899999842 2345566677
Q ss_pred hccCCccEEEEEEeCCCCCCcccH--HHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh-------
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDL--DCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE------- 184 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~------- 184 (219)
.. +|++++|+|+++..+.... .+...+. ..+.|+++++||+|+... +..+.++........
T Consensus 85 ~~---ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~ 157 (190)
T cd00879 85 PE---VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA----VSEEELRQALGLYGTTTGKGVS 157 (190)
T ss_pred cc---CCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC----cCHHHHHHHhCccccccccccc
Confidence 66 8999999999976543221 1112222 256999999999998642 222333333221110
Q ss_pred ---cCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 185 ---NYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 185 ---~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
......+++++||++|.|++|+++||.+.
T Consensus 158 ~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 158 LKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11123468999999999999999999765
No 141
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.88 E-value=5.4e-21 Score=142.44 Aligned_cols=158 Identities=21% Similarity=0.237 Sum_probs=106.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccC--------------CCCeeEEeeE--EE-ecCeEEEEeCCCCCCCCCCcc
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSK--------------KPGKTQLINH--FL-VNKSWYIVDLPGYGFAKAPDV 103 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~t~~~~~--~~-~~~~~~liDtpg~~~~~~~~~ 103 (219)
+|+|+|.+|+|||||+|+|++......... ..+.+..... .. .+..+.++||||..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~------- 73 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE------- 73 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH-------
Confidence 489999999999999999998743222111 1122222211 11 23478999999963
Q ss_pred hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
.+......+++. +|++++|+|+.++......+.+..+...+.|+++|+||+|+...+.. ....+...+.+.
T Consensus 74 ---~~~~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~---~~~~~~~~~~~~ 144 (189)
T cd00881 74 ---DFSSEVIRGLSV---SDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDL---EEVLREIKELLG 144 (189)
T ss_pred ---HHHHHHHHHHHh---cCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcH---HHHHHHHHHHHc
Confidence 233445556655 89999999999877666666666666678999999999999863211 122223333332
Q ss_pred hcC-----------CCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 184 ENY-----------PHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 184 ~~~-----------~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
... ....+++++||+.|.|++++++++.+.+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 145 LIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred cccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 211 1357899999999999999999998764
No 142
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.88 E-value=4.6e-21 Score=139.00 Aligned_cols=151 Identities=19% Similarity=0.267 Sum_probs=103.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
||+++|++|+|||||++++++..+.....+... .........+ ..+.++|+||.. .+..+...++.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~ 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQE----------EFSAMRDLYIR 69 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHHHh
Confidence 689999999999999999998754444444444 2222222233 357899999942 24556666666
Q ss_pred ccCCccEEEEEEeCCCCCCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
. +|++++|+|++++.+..... ....+ .....|+++|+||+|+... .....+..+.+..... .++
T Consensus 70 ~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~------~~~ 138 (160)
T cd00876 70 Q---GDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE--RQVSKEEGKALAKEWG------CPF 138 (160)
T ss_pred c---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc--ceecHHHHHHHHHHcC------CcE
Confidence 6 89999999999876544321 11111 1247999999999998763 2222333334433322 689
Q ss_pred EEeecCCCCChHHHHHHHHHH
Q 027757 193 IMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~ 213 (219)
+++|++++.|+++++++|.+.
T Consensus 139 ~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 139 IETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred EEeccCCCCCHHHHHHHHHhh
Confidence 999999999999999999764
No 143
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.88 E-value=6e-21 Score=138.23 Aligned_cols=154 Identities=25% Similarity=0.304 Sum_probs=103.1
Q ss_pred EEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120 (219)
Q Consensus 44 i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (219)
|+|.+|+|||||+|++++.. ....+.++++.... .+.. +..+.++||||......... -..+...++.. +
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~ 73 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-E 73 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-C
Confidence 58999999999999999974 34444555554432 2222 34789999999753221111 12344555543 4
Q ss_pred CccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCC
Q 027757 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTG 200 (219)
Q Consensus 121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 200 (219)
.+|++|+|+|+.++... .....++...++|+++|+||+|+.+.... ....+.+.+.+. .+++++||+++
T Consensus 74 ~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~---~~~~~~~~~~~~------~~~~~iSa~~~ 142 (158)
T cd01879 74 KPDLIVNVVDATNLERN--LYLTLQLLELGLPVVVALNMIDEAEKRGI---KIDLDKLSELLG------VPVVPTSARKG 142 (158)
T ss_pred CCcEEEEEeeCCcchhH--HHHHHHHHHcCCCEEEEEehhhhcccccc---hhhHHHHHHhhC------CCeEEEEccCC
Confidence 58999999999975442 33344556678999999999999764321 112233333222 58999999999
Q ss_pred CChHHHHHHHHHHHh
Q 027757 201 LGRDELLLHMSQLRN 215 (219)
Q Consensus 201 ~~v~el~~~l~~~~~ 215 (219)
.|++++++++.+.++
T Consensus 143 ~~~~~l~~~l~~~~~ 157 (158)
T cd01879 143 EGIDELKDAIAELAE 157 (158)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999988754
No 144
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.87 E-value=1.7e-21 Score=142.70 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=103.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (219)
.|+++|++|+|||||+++|.+. +...+.++.+.+.. .....+..+.++|+||. ..+..++..|++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~~~-- 66 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT-KLRLDKYEVCIFDLGGG----------ANFRGIWVNYYAE-- 66 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE-EEEECCEEEEEEECCCc----------HHHHHHHHHHHcC--
Confidence 4899999999999999999987 56666666665432 11122447889999994 2345677788877
Q ss_pred CccEEEEEEeCCCCCCcccH-HHHHHh-cc---CCCcEEEEEEcccccccccCCCchHhHHHHH--HHHHhcCCCCCCeE
Q 027757 121 SLVGVLLLIDASVPPQKIDL-DCANWL-GR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ--QLIRENYPHHPPWI 193 (219)
Q Consensus 121 ~~d~vi~v~d~~~~~~~~~~-~~~~~~-~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 193 (219)
+|++|+|+|+++..+.... ..+..+ .. .++|+++|+||+|+..... ..++.+.. +.+.......++++
T Consensus 67 -a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~ 141 (167)
T cd04161 67 -AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL----GADVIEYLSLEKLVNENKSLCHIE 141 (167)
T ss_pred -CCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC----HHHHHHhcCcccccCCCCceEEEE
Confidence 8999999999987654432 112212 11 4789999999999875421 11121111 11111112335788
Q ss_pred EeecCCC------CChHHHHHHHHH
Q 027757 194 MTSSVTG------LGRDELLLHMSQ 212 (219)
Q Consensus 194 ~~Sa~~~------~~v~el~~~l~~ 212 (219)
++||++| .|+.+.++||.+
T Consensus 142 ~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 142 PCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EeEceeCCCCccccCHHHHHHHHhc
Confidence 8999998 899999999975
No 145
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.2e-20 Score=157.13 Aligned_cols=189 Identities=18% Similarity=0.199 Sum_probs=124.4
Q ss_pred cccccccccceeeeeccCCCCCCCCCC--------------CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE
Q 027757 12 PYAGHSQIKEVEFVKSSGRAKDCPKDD--------------RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77 (219)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~ 77 (219)
..++.....|..|..+..+.+.....+ ...|+|+|.+|||||||+|+|++.+ +.+.+.+++|..
T Consensus 118 a~GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~ 195 (500)
T PRK12296 118 AAGGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLV 195 (500)
T ss_pred EccCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCC--ccccccCccccc
Confidence 366666677777766655544433222 3589999999999999999999863 456777888876
Q ss_pred eeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC----CcccH-----HHHHH
Q 027757 78 INHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP----QKIDL-----DCANW 145 (219)
Q Consensus 78 ~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~----~~~~~-----~~~~~ 145 (219)
+....+ +..+.++||||+..... ....+...+++..+.+|++|+|+|+++.. ...+. ++..+
T Consensus 196 P~lGvv~~~~~~f~laDtPGliegas------~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y 269 (500)
T PRK12296 196 PNLGVVQAGDTRFTVADVPGLIPGAS------EGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAY 269 (500)
T ss_pred ceEEEEEECCeEEEEEECCCCccccc------hhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHh
Confidence 544332 34799999999753211 11223344555555689999999998532 11111 22222
Q ss_pred hc----------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 146 LG----------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 146 ~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.. ..++|.++|+||+|+.+.. +..+.+...+... ..+++++||+++.|+++++.+|.+.++
T Consensus 270 ~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~------el~e~l~~~l~~~---g~~Vf~ISA~tgeGLdEL~~~L~ell~ 340 (500)
T PRK12296 270 APALDGDLGLGDLAERPRLVVLNKIDVPDAR------ELAEFVRPELEAR---GWPVFEVSAASREGLRELSFALAELVE 340 (500)
T ss_pred hhcccccchhhhhcCCCEEEEEECccchhhH------HHHHHHHHHHHHc---CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 21 2468999999999986431 1122222233321 258999999999999999999998876
Q ss_pred hh
Q 027757 216 YW 217 (219)
Q Consensus 216 ~~ 217 (219)
..
T Consensus 341 ~~ 342 (500)
T PRK12296 341 EA 342 (500)
T ss_pred hh
Confidence 64
No 146
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.87 E-value=3.2e-21 Score=144.48 Aligned_cols=154 Identities=19% Similarity=0.126 Sum_probs=102.7
Q ss_pred CCeEEEEcCCCCCHHHHHH-HHhcCcc-----cccccCCCCe-eEEeeE--------EEec---CeEEEEeCCCCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLIN-ALVRKKE-----LALTSKKPGK-TQLINH--------FLVN---KSWYIVDLPGYGFAKA 100 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin-~l~~~~~-----~~~~~~~~~~-t~~~~~--------~~~~---~~~~liDtpg~~~~~~ 100 (219)
.+||+++|.+|+|||||+. ++.+..+ ...+.++.+. ...... ...+ ..+.+|||+|...
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--- 78 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--- 78 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh---
Confidence 4699999999999999996 6655422 2223333321 111100 1122 2688999999531
Q ss_pred CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccc-----------
Q 027757 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKV----------- 165 (219)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~----------- 165 (219)
.+...+++. +|++|+|+|++++.++.... ....+.. .+.|+++|+||+|+...
T Consensus 79 ---------~~~~~~~~~---ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~ 146 (195)
T cd01873 79 ---------KDRRFAYGR---SDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRP 146 (195)
T ss_pred ---------hhhcccCCC---CCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccc
Confidence 123446666 89999999999988775542 1222222 47899999999998642
Q ss_pred ------ccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 166 ------AKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 166 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
..+.+..++.+++.+.++ ++++++||++|.|++++|+.+.+.
T Consensus 147 ~~~~~~~~~~V~~~e~~~~a~~~~------~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 147 LARPIKNADILPPETGRAVAKELG------IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccccCCccCHHHHHHHHHHhC------CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 124555666666665544 589999999999999999988764
No 147
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.87 E-value=9.7e-22 Score=137.10 Aligned_cols=156 Identities=22% Similarity=0.256 Sum_probs=123.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cC--eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NK--SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
..+|++++|++-+|||||+..|+..++....+|+.|.+........ +. ++.+|||. ||+.|+++.+
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdta----------gqerfrsitk 76 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTA----------GQERFRSITK 76 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeecc----------chHHHHHHHH
Confidence 4679999999999999999999998877777888776654322111 11 45666665 5899999999
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
.||++ +-++++|+|+++..++.+. ..|+.+ .++-+.+|++|+|+..+ +++..++.+.+..+.+
T Consensus 77 syyrn---svgvllvyditnr~sfehv--~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq--RqVt~EEaEklAa~hg-- 147 (213)
T KOG0091|consen 77 SYYRN---SVGVLLVYDITNRESFEHV--ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ--RQVTAEEAEKLAASHG-- 147 (213)
T ss_pred HHhhc---ccceEEEEeccchhhHHHH--HHHHHHHHHhcCCCCeeEEEEeccccchhhh--ccccHHHHHHHHHhcC--
Confidence 99999 7889999999998887653 345443 45668899999999864 7777888888877766
Q ss_pred CCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
..++++||++|.|++|.|..|.+.+-.
T Consensus 148 ----M~FVETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 148 ----MAFVETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred ----ceEEEecccCCCcHHHHHHHHHHHHHH
Confidence 478999999999999999999876543
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.87 E-value=1.2e-20 Score=152.64 Aligned_cols=156 Identities=24% Similarity=0.299 Sum_probs=104.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
...++|+++|.+|+|||||+|+|++.. ....+.+++|.+.. .... +..+.++||||+... .+....+.|.+..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~-l~~~lie~f~~tl 263 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD-LPHELVAAFRATL 263 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCccccc-CCHHHHHHHHHHH
Confidence 456899999999999999999999974 33344444444332 2222 348999999997321 1122223344443
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccH----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDL----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
. ++.. +|++++|+|++++.+..+. ..+..+...++|+++|+||+|+.+. ...... .. .
T Consensus 264 e-~~~~---ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~-------~~v~~~----~~---~ 325 (351)
T TIGR03156 264 E-EVRE---ADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE-------PRIERL----EE---G 325 (351)
T ss_pred H-HHHh---CCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh-------HhHHHH----Hh---C
Confidence 3 2344 8999999999988765443 2333333357899999999998653 122211 11 1
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
..+++++||++|.|+++++++|.+.
T Consensus 326 ~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCEEEEEccCCCCHHHHHHHHHhh
Confidence 1468999999999999999998764
No 149
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=3.6e-21 Score=132.36 Aligned_cols=152 Identities=20% Similarity=0.232 Sum_probs=119.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..+||+++|+.|+|||+|+.+|+..-+.+-...+.|....+..+.+++ ++.+|||. ||++|+++...
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdta----------gqerfrsitqs 75 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTA----------GQERFRSITQS 75 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeecc----------chHHHHHHHHH
Confidence 468999999999999999999999877777777778777777776666 45566665 58999999999
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
||+. ++++|+|+|++-..++.- +.+|+.+ .++--++|+||+|+.+. ++++...-+++.+.-.
T Consensus 76 yyrs---ahalilvydiscqpsfdc--lpewlreie~yan~kvlkilvgnk~d~~dr--revp~qigeefs~~qd----- 143 (213)
T KOG0095|consen 76 YYRS---AHALILVYDISCQPSFDC--LPEWLREIEQYANNKVLKILVGNKIDLADR--REVPQQIGEEFSEAQD----- 143 (213)
T ss_pred Hhhh---cceEEEEEecccCcchhh--hHHHHHHHHHHhhcceEEEeeccccchhhh--hhhhHHHHHHHHHhhh-----
Confidence 9999 999999999997666543 2456553 56677999999998875 4555565666655422
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
.-++++||++..|++.||..+.-
T Consensus 144 -myfletsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 144 -MYFLETSAKEADNVEKLFLDLAC 166 (213)
T ss_pred -hhhhhhcccchhhHHHHHHHHHH
Confidence 35789999999999999987754
No 150
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=4.4e-21 Score=160.47 Aligned_cols=156 Identities=26% Similarity=0.265 Sum_probs=115.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
+|+|+|.+|+|||||+|+|++.. .+.+.+.+++|++.... +.+..+.++||||+.... ...+..+......++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHHh
Confidence 58999999999999999999974 66677788887654332 234579999999975321 1122333344444454
Q ss_pred ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 197 (219)
. +|++++|+|+.++.+..+..+..++.+.++|+++|+||+|+...+. ...++ .. ++ ..+++++||
T Consensus 78 ~---ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~------~~~~~----~~-lg-~~~~~~vSa 142 (429)
T TIGR03594 78 E---ADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA------VAAEF----YS-LG-FGEPIPISA 142 (429)
T ss_pred h---CCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc------cHHHH----Hh-cC-CCCeEEEeC
Confidence 4 8999999999998888877888899888999999999999875421 11111 11 11 136899999
Q ss_pred CCCCChHHHHHHHHHHH
Q 027757 198 VTGLGRDELLLHMSQLR 214 (219)
Q Consensus 198 ~~~~~v~el~~~l~~~~ 214 (219)
+.|.|++++++++.+..
T Consensus 143 ~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 143 EHGRGIGDLLDAILELL 159 (429)
T ss_pred CcCCChHHHHHHHHHhc
Confidence 99999999999998765
No 151
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.7e-21 Score=141.63 Aligned_cols=157 Identities=20% Similarity=0.226 Sum_probs=126.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...+||+++|++|+|||-|+.+|+.+.|.....++.|.........++++.+.. ..|++.||++|+.+...||
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vka-------qIWDTAGQERyrAitSaYY 84 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKA-------QIWDTAGQERYRAITSAYY 84 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEE-------eeecccchhhhccccchhh
Confidence 456899999999999999999999998888778888877665555555543222 3455566999999999999
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++ +-++++|+|+++..++.. +.+|+.+ .++++++|+||+||... +.+..++...+.+..+ .
T Consensus 85 rg---AvGAllVYDITr~~Tfen--v~rWL~ELRdhad~nivimLvGNK~DL~~l--raV~te~~k~~Ae~~~------l 151 (222)
T KOG0087|consen 85 RG---AVGALLVYDITRRQTFEN--VERWLKELRDHADSNIVIMLVGNKSDLNHL--RAVPTEDGKAFAEKEG------L 151 (222)
T ss_pred cc---cceeEEEEechhHHHHHH--HHHHHHHHHhcCCCCeEEEEeecchhhhhc--cccchhhhHhHHHhcC------c
Confidence 99 899999999999888764 4677775 67999999999999873 6677777777776544 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHH
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.++++||..+.|+++.|+.+...
T Consensus 152 ~f~EtSAl~~tNVe~aF~~~l~~ 174 (222)
T KOG0087|consen 152 FFLETSALDATNVEKAFERVLTE 174 (222)
T ss_pred eEEEecccccccHHHHHHHHHHH
Confidence 88999999999999999877553
No 152
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.87 E-value=1e-20 Score=139.26 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=100.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...++|+++|++|+|||||++++.+.. .....++.+.+.... ...+..+.++|+||.. .+...+..++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~-~~~~~~t~g~~~~~i-~~~~~~~~~~D~~G~~----------~~~~~~~~~~ 79 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASED-ISHITPTQGFNIKTV-QSDGFKLNVWDIGGQR----------AIRPYWRNYF 79 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCC-CcccCCCCCcceEEE-EECCEEEEEEECCCCH----------HHHHHHHHHh
Confidence 347899999999999999999999973 344445544332211 1224468899999842 2334455555
Q ss_pred hccCCccEEEEEEeCCCCCCcccH--HHHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDL--DCANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 189 (219)
.. +|++++|+|+++..+.... .....+ ...++|+++++||+|+.... ..+++.+.++.. ....
T Consensus 80 ~~---~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~i~~~l~~~~~~~~~ 149 (173)
T cd04155 80 EN---TDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-------PAEEIAEALNLHDLRDRT 149 (173)
T ss_pred cC---CCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-------CHHHHHHHcCCcccCCCe
Confidence 55 8999999999875443221 111111 23579999999999986531 233333333221 1112
Q ss_pred CCeEEeecCCCCChHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
.+++++||++|.|++++++||.+
T Consensus 150 ~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 150 WHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEEEEeECCCCCCHHHHHHHHhc
Confidence 35789999999999999999975
No 153
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.87 E-value=4.8e-21 Score=139.95 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=100.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (219)
.|+++|++|+|||||+++|.+..+...+.++.+... ......+..+.+|||||.. .+..++..+++.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~-~~i~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~~-- 67 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS-VAIPTQDAIMELLEIGGSQ----------NLRKYWKRYLSG-- 67 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce-EEEeeCCeEEEEEECCCCc----------chhHHHHHHHhh--
Confidence 379999999999999999998755555555554322 1111223468899999842 345677788887
Q ss_pred CccEEEEEEeCCCCCCcccHH--HHHHhc-cCCCcEEEEEEcccccccccCCCchHhHHHHH--HHHHhcCCCCCCeEEe
Q 027757 121 SLVGVLLLIDASVPPQKIDLD--CANWLG-RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ--QLIRENYPHHPPWIMT 195 (219)
Q Consensus 121 ~~d~vi~v~d~~~~~~~~~~~--~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 195 (219)
+|++|+|+|++++.+..... +...+. ..++|+++|+||+|+..... ...+.... ..+.. ...++++++
T Consensus 68 -ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~--~~~~~~~~~ 140 (164)
T cd04162 68 -SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS----VQEIHKELELEPIAR--GRRWILQGT 140 (164)
T ss_pred -CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----HHHHHHHhCChhhcC--CCceEEEEe
Confidence 89999999999876443221 122222 26799999999999865421 11111111 11211 123678889
Q ss_pred ecCC------CCChHHHHHHHHH
Q 027757 196 SSVT------GLGRDELLLHMSQ 212 (219)
Q Consensus 196 Sa~~------~~~v~el~~~l~~ 212 (219)
||++ +.|++++|+.+..
T Consensus 141 Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 141 SLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred eecCCCChhHHHHHHHHHHHHhc
Confidence 8888 9999999988753
No 154
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.86 E-value=1.6e-20 Score=135.71 Aligned_cols=150 Identities=17% Similarity=0.134 Sum_probs=100.3
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCC
Q 027757 42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRES 121 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (219)
|+++|++|+|||||+++|.+..+.....++.+..... .......+.++|+||. ..+...+..++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~g~----------~~~~~~~~~~~~~--- 67 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGNVTLKVWDLGGQ----------PRFRSMWERYCRG--- 67 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECCEEEEEEECCCC----------HhHHHHHHHHHhc---
Confidence 7999999999999999999986655555544433221 1112246889999984 2345566777766
Q ss_pred ccEEEEEEeCCCCCCcccH-H-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH--hcCCCCCCeEE
Q 027757 122 LVGVLLLIDASVPPQKIDL-D-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR--ENYPHHPPWIM 194 (219)
Q Consensus 122 ~d~vi~v~d~~~~~~~~~~-~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 194 (219)
+|++++|+|+++..+.... . +..++. ..++|+++|+||+|+.+.. ..++....+. ......+++++
T Consensus 68 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 140 (159)
T cd04159 68 VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL-------SVDELIEQMNLKSITDREVSCYS 140 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc-------CHHHHHHHhCcccccCCceEEEE
Confidence 8999999999875543221 1 112221 1578999999999986531 1222222221 11223367899
Q ss_pred eecCCCCChHHHHHHHHH
Q 027757 195 TSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~ 212 (219)
+|++++.|+++++++|.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 141 ISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEeccCCChHHHHHHHhh
Confidence 999999999999999875
No 155
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.86 E-value=1.2e-20 Score=140.84 Aligned_cols=158 Identities=16% Similarity=0.130 Sum_probs=99.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
+.||+++|+.|+|||||+++|....+.....++...... .....+ ..+.++||+|.... ..+...+
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~~ 69 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEY----------ERLRPLS 69 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhc----------cccchhh
Confidence 358999999999999999999865444433333222211 122222 24788999985321 1222334
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEccccccccc--------CCCchHhHHHHHHHHH
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAK--------GRRPDENIKSFQQLIR 183 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~ 183 (219)
+.. +|++++++|+++..+..... ....+. ..+.|+++|+||+|+..... +.+..+....+.+.++
T Consensus 70 ~~~---a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (187)
T cd04129 70 YSK---AHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG 146 (187)
T ss_pred cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC
Confidence 444 89999999999876654431 122222 24799999999999854211 1222223333333322
Q ss_pred hcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..++|++||+++.|++++|+++.+.+-
T Consensus 147 -----~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 147 -----AKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred -----CcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 147999999999999999999987543
No 156
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.86 E-value=2.6e-20 Score=135.16 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=93.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (219)
+|+++|.+|+|||||+|++.+.. . .. . .+..... ... .+|||||...... ..+..+.. ..+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~-~-~~-~---~~~~v~~-~~~---~~iDtpG~~~~~~-----~~~~~~~~----~~~ 63 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY-T-LA-R---KTQAVEF-NDK---GDIDTPGEYFSHP-----RWYHALIT----TLQ 63 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC-c-cC-c---cceEEEE-CCC---CcccCCccccCCH-----HHHHHHHH----HHh
Confidence 79999999999999999999862 1 11 1 1111111 111 2699999642211 11122221 233
Q ss_pred CccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCC
Q 027757 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTG 200 (219)
Q Consensus 121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 200 (219)
.+|++++|+|++++.+.....+... ..+.|+++++||+|+...+ .+...++... .+...|++++||++|
T Consensus 64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~-----~~~~~~~~~~----~~~~~p~~~~Sa~~g 132 (158)
T PRK15467 64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDAD-----VAATRKLLLE----TGFEEPIFELNSHDP 132 (158)
T ss_pred cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCccc-----HHHHHHHHHH----cCCCCCEEEEECCCc
Confidence 4899999999998876654433332 2467999999999985421 1222333222 222359999999999
Q ss_pred CChHHHHHHHHHHHhh
Q 027757 201 LGRDELLLHMSQLRNY 216 (219)
Q Consensus 201 ~~v~el~~~l~~~~~~ 216 (219)
.|++++++++.+....
T Consensus 133 ~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 133 QSVQQLVDYLASLTKQ 148 (158)
T ss_pred cCHHHHHHHHHHhchh
Confidence 9999999999987754
No 157
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=2.1e-20 Score=156.14 Aligned_cols=154 Identities=27% Similarity=0.299 Sum_probs=107.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|.+|+|||||+|+|++. .....++.+++|.+... +. .+..+.++||||+.... +......++. ...+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~-~~ie~~gi~~-~~~~ 291 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD-DEVEKIGIER-SREA 291 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc-cHHHHHHHHH-HHHH
Confidence 479999999999999999999997 45556777787765432 22 23479999999975321 1111110111 1223
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
+.. +|++++|+|++++.+..+...+.. ..+.|+++|+||+|+.+... .. .....+++++
T Consensus 292 ~~~---aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~-------~~---------~~~~~~~i~i 350 (449)
T PRK05291 292 IEE---ADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEID-------LE---------EENGKPVIRI 350 (449)
T ss_pred HHh---CCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccch-------hh---------hccCCceEEE
Confidence 444 899999999998877655443333 45789999999999975321 11 1112578999
Q ss_pred ecCCCCChHHHHHHHHHHHhh
Q 027757 196 SSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~~~~ 216 (219)
||++|.|+++++++|.+.+..
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999887653
No 158
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.86 E-value=2.7e-20 Score=155.95 Aligned_cols=155 Identities=23% Similarity=0.249 Sum_probs=111.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
++|+|+|.+|+|||||+|+|++.. .+.+...+++|++.... ..+..+.+|||||+..... .-...+......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~-~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKR-DAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD--GFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-ceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch--hHHHHHHHHHHHHH
Confidence 689999999999999999999973 45566677776654322 2245799999999764211 11112223333444
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
.. +|++|+|+|+.++.+..+..+..++...++|+++|+||+|+... .....++. . ++. ..++++|
T Consensus 79 ~~---ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~------~~~~~~~~---~--lg~-~~~~~iS 143 (435)
T PRK00093 79 EE---ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE------EADAYEFY---S--LGL-GEPYPIS 143 (435)
T ss_pred Hh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc------hhhHHHHH---h--cCC-CCCEEEE
Confidence 44 89999999999987777777888888889999999999996532 11222221 1 111 2479999
Q ss_pred cCCCCChHHHHHHHHH
Q 027757 197 SVTGLGRDELLLHMSQ 212 (219)
Q Consensus 197 a~~~~~v~el~~~l~~ 212 (219)
|++|.|++++++++.+
T Consensus 144 a~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 144 AEHGRGIGDLLDAILE 159 (435)
T ss_pred eeCCCCHHHHHHHHHh
Confidence 9999999999999976
No 159
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.86 E-value=5.2e-20 Score=138.96 Aligned_cols=159 Identities=21% Similarity=0.208 Sum_probs=99.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEee----EE--------------------------------E
Q 027757 40 PEFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLIN----HF--------------------------------L 82 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~----~~--------------------------------~ 82 (219)
.+|+++|+.|+|||||++++.+.. .........+.+.... .+ .
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 368999999999999999998751 1111111111111110 00 0
Q ss_pred ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-CCcccHHHHHHhccCC-CcEEEEEEcc
Q 027757 83 VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGRNN-IPLTFVFTKC 160 (219)
Q Consensus 83 ~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~-~p~iiv~nK~ 160 (219)
....+.+|||||. ..+...++.....+|++++|+|++++ ........+..+...+ .|+++|+||+
T Consensus 81 ~~~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~ 147 (203)
T cd01888 81 LVRHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI 147 (203)
T ss_pred cccEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence 1146899999994 23455666666668999999999974 2333344454444444 4799999999
Q ss_pred cccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 161 DKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
|+..... .....+++.+.+........+++++||++|.|+++++++|.+.+
T Consensus 148 Dl~~~~~---~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 148 DLVKEEQ---ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred hccCHHH---HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 9975311 11112222222322222346899999999999999999998754
No 160
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.85 E-value=3.7e-20 Score=129.42 Aligned_cols=141 Identities=26% Similarity=0.296 Sum_probs=96.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCC-CCCCCCCcchhhhHHHHHHHHhhc
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG-YGFAKAPDVTRMDWSSFTKGYFLN 118 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg-~~~~~~~~~~~~~~~~~~~~~~~~ 118 (219)
.||+++|+.|+|||||+++|.+.. ..+..+. .+.+ .. .++|||| +... ..+.......
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~--~~~~KTq----~i~~---~~--~~IDTPGEyiE~----------~~~y~aLi~t 60 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE--IRYKKTQ----AIEY---YD--NTIDTPGEYIEN----------PRFYHALIVT 60 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC--CCcCccc----eeEe---cc--cEEECChhheeC----------HHHHHHHHHH
Confidence 489999999999999999999963 1222221 1111 11 2599999 3222 2233333444
Q ss_pred cCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecC
Q 027757 119 RESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSV 198 (219)
Q Consensus 119 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 198 (219)
...||.|++|.|++++.+.... ........|++-|+||+|+... ..+++...+.+...+-. .+|.+|+.
T Consensus 61 a~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~~~------~~~i~~a~~~L~~aG~~--~if~vS~~ 129 (143)
T PF10662_consen 61 AQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLPSD------DANIERAKKWLKNAGVK--EIFEVSAV 129 (143)
T ss_pred HhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCccc------hhhHHHHHHHHHHcCCC--CeEEEECC
Confidence 5558999999999987654443 3334467899999999999832 14566655555554433 56999999
Q ss_pred CCCChHHHHHHHHH
Q 027757 199 TGLGRDELLLHMSQ 212 (219)
Q Consensus 199 ~~~~v~el~~~l~~ 212 (219)
+|.|+++|.++|.+
T Consensus 130 ~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 130 TGEGIEELKDYLEE 143 (143)
T ss_pred CCcCHHHHHHHHhC
Confidence 99999999999863
No 161
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.85 E-value=6.1e-20 Score=152.65 Aligned_cols=157 Identities=25% Similarity=0.205 Sum_probs=107.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE--Ee-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF--LV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|++|+|||||+|+|++. ..+.+++.+++|++.... .. +..+.++||||+.... +...+.. ......
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~-~~ie~~g-i~~~~~ 278 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA-DFVERLG-IEKSFK 278 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch-hHHHHHH-HHHHHH
Confidence 4579999999999999999999996 456677888888765332 22 3478999999975321 1111100 011234
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
+++. +|++++|+|++++.+..+. .+..+...++|+++|+||+|+... ..+.+.+.+ ..+++.
T Consensus 279 ~~~~---aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~--------~~~~~~~~~------~~~~~~ 340 (442)
T TIGR00450 279 AIKQ---ADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN--------SLEFFVSSK------VLNSSN 340 (442)
T ss_pred HHhh---CCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc--------chhhhhhhc------CCceEE
Confidence 4455 8999999999988775543 344444468899999999998642 112222221 147899
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q 027757 195 TSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+||++ .|++++++.+.+.+..
T Consensus 341 vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 341 LSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred EEEec-CCHHHHHHHHHHHHHH
Confidence 99998 5899998888776654
No 162
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.85 E-value=6e-20 Score=161.48 Aligned_cols=160 Identities=21% Similarity=0.229 Sum_probs=116.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+|+|.+|+|||||+|+|++. ..+.+.+.+++|++...... +..+.+|||||+.... ..-...+......
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~ 350 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV--EGIDSAIASQAQI 350 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC--ccHHHHHHHHHHH
Confidence 4578999999999999999999997 45677888888877544332 3479999999975321 1122223333444
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
++.. +|++|+|+|++++....+..+..++...++|+++|+||+|+.... ....++ +...+ ...++
T Consensus 351 ~~~~---aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~------~~~~~~---~~lg~---~~~~~ 415 (712)
T PRK09518 351 AVSL---ADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE------YDAAEF---WKLGL---GEPYP 415 (712)
T ss_pred HHHh---CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch------hhHHHH---HHcCC---CCeEE
Confidence 5555 899999999998777777777888888999999999999986421 111111 11111 24579
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q 027757 195 TSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+||++|.|++++++++.+.+.
T Consensus 416 iSA~~g~GI~eLl~~i~~~l~ 436 (712)
T PRK09518 416 ISAMHGRGVGDLLDEALDSLK 436 (712)
T ss_pred EECCCCCCchHHHHHHHHhcc
Confidence 999999999999999987653
No 163
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.85 E-value=9.8e-20 Score=131.35 Aligned_cols=156 Identities=25% Similarity=0.323 Sum_probs=107.0
Q ss_pred EEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR 119 (219)
Q Consensus 44 i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (219)
++|++|+|||||++++++. .........+++........ ...+.++||||+........ .+......+++.
T Consensus 1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~---~~~~~~~~~~~~- 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR---EREELARRVLER- 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh---hHHHHHHHHHHh-
Confidence 5899999999999999997 34444555555544333222 44899999999764322111 111233344555
Q ss_pred CCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHH--HHHHhcCCCCCCeEEeec
Q 027757 120 ESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ--QLIRENYPHHPPWIMTSS 197 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa 197 (219)
+|++++|+|++++...............+.|+++|+||+|+.... ...... ...........+++++|+
T Consensus 76 --~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~sa 146 (163)
T cd00880 76 --ADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE-------EEEELLELRLLILLLLLGLPVIAVSA 146 (163)
T ss_pred --CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChh-------hHHHHHHHHHhhcccccCCceEEEee
Confidence 899999999999877765554555566899999999999987642 222221 112223334579999999
Q ss_pred CCCCChHHHHHHHHHH
Q 027757 198 VTGLGRDELLLHMSQL 213 (219)
Q Consensus 198 ~~~~~v~el~~~l~~~ 213 (219)
+++.|++++++++.+.
T Consensus 147 ~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 147 LTGEGIDELREALIEA 162 (163)
T ss_pred eccCCHHHHHHHHHhh
Confidence 9999999999999875
No 164
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=2.5e-20 Score=128.74 Aligned_cols=154 Identities=23% Similarity=0.230 Sum_probs=116.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...+|++++|+.|.|||+|+.+|..+.+....+-+.|.......+.++. ++.+||| .||+.|++...
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDT----------AGQErFRSVtR 76 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDT----------AGQERFRSVTR 76 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeec----------ccHHHHHHHHH
Confidence 3468999999999999999999999876666666666554444343333 3445555 56999999999
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
.||++ +.+.++|+|+++.+++. ++..|+.. .++-+++++||.|+.+. +++.-.+..++.+...
T Consensus 77 sYYRG---AAGAlLVYD~Tsrdsfn--aLtnWL~DaR~lAs~nIvviL~GnKkDL~~~--R~VtflEAs~FaqEne---- 145 (214)
T KOG0086|consen 77 SYYRG---AAGALLVYDITSRDSFN--ALTNWLTDARTLASPNIVVILCGNKKDLDPE--REVTFLEASRFAQENE---- 145 (214)
T ss_pred HHhcc---ccceEEEEeccchhhHH--HHHHHHHHHHhhCCCcEEEEEeCChhhcChh--hhhhHHHHHhhhcccc----
Confidence 99999 78899999999988774 44566663 67888999999999875 4454555555554432
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
..+.++|+++|.|++|.|-...+.
T Consensus 146 --l~flETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 146 --LMFLETSALTGENVEEAFLKCART 169 (214)
T ss_pred --eeeeeecccccccHHHHHHHHHHH
Confidence 478999999999999998766553
No 165
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.85 E-value=3.3e-20 Score=139.17 Aligned_cols=152 Identities=24% Similarity=0.260 Sum_probs=97.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC--cccccc------------cCCCCeeEEeeE---EEecCeEEEEeCCCCCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK--KELALT------------SKKPGKTQLINH---FLVNKSWYIVDLPGYGFAKAP 101 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~--~~~~~~------------~~~~~~t~~~~~---~~~~~~~~liDtpg~~~~~~~ 101 (219)
..+|+++|.+|+|||||+++|++. .+.... ....+++..... ...+..+.++||||..
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~----- 76 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA----- 76 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH-----
Confidence 358999999999999999999973 122211 112333332221 1223478999999953
Q ss_pred cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHH
Q 027757 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL 181 (219)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 181 (219)
.|......+++. +|++++|+|+++.........+..+...++|+++|+||+|+.... .....+++.+.
T Consensus 77 -----~~~~~~~~~~~~---~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~----~~~~~~~~~~~ 144 (194)
T cd01891 77 -----DFGGEVERVLSM---VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR----PEEVVDEVFDL 144 (194)
T ss_pred -----HHHHHHHHHHHh---cCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC----HHHHHHHHHHH
Confidence 345666777777 899999999998544333344455555789999999999986431 11223333333
Q ss_pred HHhc----CCCCCCeEEeecCCCCChHHHH
Q 027757 182 IREN----YPHHPPWIMTSSVTGLGRDELL 207 (219)
Q Consensus 182 ~~~~----~~~~~~~~~~Sa~~~~~v~el~ 207 (219)
+... ....++++++||++|.|+.++.
T Consensus 145 ~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~ 174 (194)
T cd01891 145 FIELGATEEQLDFPVLYASAKNGWASLNLE 174 (194)
T ss_pred HHHhCCccccCccCEEEeehhccccccccc
Confidence 2211 1124689999999998876553
No 166
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.85 E-value=1.3e-20 Score=139.06 Aligned_cols=154 Identities=23% Similarity=0.285 Sum_probs=106.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
....+|+++|..||||||+++++... ......|+.+... ..... +..+.++|.+|- ..++.+++.|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~-~~~~~~pT~g~~~--~~i~~~~~~~~~~d~gG~----------~~~~~~w~~y 78 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNG-EISETIPTIGFNI--EEIKYKGYSLTIWDLGGQ----------ESFRPLWKSY 78 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSS-SEEEEEEESSEEE--EEEEETTEEEEEEEESSS----------GGGGGGGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhc-cccccCccccccc--ceeeeCcEEEEEEecccc----------ccccccceee
Confidence 55789999999999999999999986 3444455544332 22222 347889999883 2335577788
Q ss_pred hhccCCccEEEEEEeCCCCCCccc--HHHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh-cC--C
Q 027757 116 FLNRESLVGVLLLIDASVPPQKID--LDCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE-NY--P 187 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~--~ 187 (219)
+.. +|++|||+|+++...... ..+...+. -.++|+++++||+|+.+.. ..+++...+.. .+ .
T Consensus 79 ~~~---~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~-------~~~~i~~~l~l~~l~~~ 148 (175)
T PF00025_consen 79 FQN---ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM-------SEEEIKEYLGLEKLKNK 148 (175)
T ss_dssp HTT---ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS-------THHHHHHHTTGGGTTSS
T ss_pred ccc---cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc-------hhhHHHhhhhhhhcccC
Confidence 877 899999999997553322 12222233 2579999999999987541 22333333221 12 2
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
..+.++.+||.+|.|+.|.++||.+.
T Consensus 149 ~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 149 RPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp SCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred CceEEEeeeccCCcCHHHHHHHHHhc
Confidence 45678999999999999999999875
No 167
>PRK11058 GTPase HflX; Provisional
Probab=99.84 E-value=1.4e-19 Score=149.67 Aligned_cols=159 Identities=18% Similarity=0.195 Sum_probs=102.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-c-CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-N-KSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
..++|+++|.+|+|||||+|+|++... . ..+.+++|.+... ... + ..+.++||||+... .+......|...
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~-~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp~~lve~f~~t-- 270 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARV-Y-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH-LPHDLVAAFKAT-- 270 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCce-e-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc-CCHHHHHHHHHH--
Confidence 458999999999999999999999742 2 4444455544322 222 2 37899999997321 111112223222
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+.....+|++|+|+|++++.+.... ..+..+...++|+++|+||+|+.+... .... ... .+ .
T Consensus 271 --l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----~~~~----~~~--~~-~ 336 (426)
T PRK11058 271 --LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----PRID----RDE--EN-K 336 (426)
T ss_pred --HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh-----HHHH----HHh--cC-C
Confidence 2223448999999999998765543 233444445799999999999864210 1111 111 11 1
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..++++||++|.|+++++++|.+.+.
T Consensus 337 ~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 337 PIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 23589999999999999999988764
No 168
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.84 E-value=1.3e-19 Score=157.39 Aligned_cols=158 Identities=25% Similarity=0.319 Sum_probs=111.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE----EEe---cCeEEEEeCCCCCCCCCCcchhhhHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH----FLV---NKSWYIVDLPGYGFAKAPDVTRMDWS 109 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~----~~~---~~~~~liDtpg~~~~~~~~~~~~~~~ 109 (219)
...+.|+|+|.+++|||||+++|.+..+.. ....+.|.++.. +.. +..+.+|||||+ ..|.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~--~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh----------e~F~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ--KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH----------EAFS 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCcc--ccCCccccccceEEEEEEecCCceEEEEEECCcH----------HHHH
Confidence 457899999999999999999999864322 222333333221 111 247999999995 3345
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHH---HhcC
Q 027757 110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI---RENY 186 (219)
Q Consensus 110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~ 186 (219)
.++..++.. +|++|+|+|+.++...+..+.+..+...++|+++++||+|+.... ...+.+..... ...+
T Consensus 310 ~mr~rg~~~---aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-----~e~v~~eL~~~~ll~e~~ 381 (742)
T CHL00189 310 SMRSRGANV---TDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-----TERIKQQLAKYNLIPEKW 381 (742)
T ss_pred HHHHHHHHH---CCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-----HHHHHHHHHHhccchHhh
Confidence 555555555 899999999998877777777888888899999999999987531 11111111111 1122
Q ss_pred CCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 187 PHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+..++++++||++|.|+++++++|....
T Consensus 382 g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 382 GGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 3347899999999999999999998754
No 169
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.84 E-value=2.3e-19 Score=153.47 Aligned_cols=158 Identities=22% Similarity=0.281 Sum_probs=110.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE--e-cC-eEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL--V-NK-SWYIVDLPGYGFAKAPDVTRMDWSSF 111 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~-~~~liDtpg~~~~~~~~~~~~~~~~~ 111 (219)
....++|+++|.+++|||||+++|.+..+.. ....+.|.+..... . +. .+.+|||||+. .|..+
T Consensus 84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~--~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe----------~F~~~ 151 (587)
T TIGR00487 84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ--GEAGGITQHIGAYHVENEDGKMITFLDTPGHE----------AFTSM 151 (587)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccc--ccCCceeecceEEEEEECCCcEEEEEECCCCc----------chhhH
Confidence 3456899999999999999999999874332 22344555543322 2 33 79999999963 22333
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH---hcCCC
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR---ENYPH 188 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 188 (219)
+... ...+|++|+|+|++++...+..+.+..+...++|+++++||+|+.... .+.........+ ..++.
T Consensus 152 r~rg---a~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~~~~~ 223 (587)
T TIGR00487 152 RARG---AKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-----PDRVKQELSEYGLVPEDWGG 223 (587)
T ss_pred HHhh---hccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-----HHHHHHHHHHhhhhHHhcCC
Confidence 3333 344899999999998777777777777777899999999999986421 122222222211 12333
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
..+++++||++|.|++++++++...
T Consensus 224 ~~~~v~iSAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 224 DTIFVPVSALTGDGIDELLDMILLQ 248 (587)
T ss_pred CceEEEEECCCCCChHHHHHhhhhh
Confidence 4689999999999999999998653
No 170
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=1.8e-19 Score=153.95 Aligned_cols=162 Identities=20% Similarity=0.242 Sum_probs=107.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---------------------cCeEEEEeCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---------------------NKSWYIVDLPGYGF 97 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---------------------~~~~~liDtpg~~~ 97 (219)
.|-|+++|.+++|||||+|+|.+..+... ...++|.++..... ...+.+|||||+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~-- 79 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH-- 79 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc--
Confidence 57899999999999999999998743221 11123332211111 013889999995
Q ss_pred CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCC---Cc---
Q 027757 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGR---RP--- 171 (219)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~---~~--- 171 (219)
+.|..++..+++. +|++++|+|++++...+..+.+.++...++|+++++||+|+.+.-... .+
T Consensus 80 --------e~f~~l~~~~~~~---aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~ 148 (590)
T TIGR00491 80 --------EAFTNLRKRGGAL---ADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMES 148 (590)
T ss_pred --------HhHHHHHHHHHhh---CCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHH
Confidence 2344555556655 899999999998777777777777777899999999999986421000 00
Q ss_pred ------------hHhHHHHHHHHHh------------cCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 172 ------------DENIKSFQQLIRE------------NYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 172 ------------~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+.+.....++.. .++...+++++||++|.|+++|+++|....+
T Consensus 149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 0001111112221 1344579999999999999999999976544
No 171
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.84 E-value=3.9e-19 Score=135.44 Aligned_cols=156 Identities=15% Similarity=0.233 Sum_probs=107.5
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSF 111 (219)
Q Consensus 35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~ 111 (219)
.....+||+++|++|+|||||+++++...+...+.++.+.......+..+ ..+.++||+|. ..|..+
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~----------~~~~~~ 74 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ----------EKFGGL 74 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc----------hhhhhh
Confidence 34557899999999999999998776655666666666655543333222 26788999883 334556
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
+..++.. ++++++|+|+++..+.... ..|+. ..++|+++++||+|+.+.. ...+ ...+.+.
T Consensus 75 ~~~~~~~---~~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~---~~~~-~~~~~~~----- 140 (215)
T PTZ00132 75 RDGYYIK---GQCAIIMFDVTSRITYKNV--PNWHRDIVRVCENIPIVLVGNKVDVKDRQ---VKAR-QITFHRK----- 140 (215)
T ss_pred hHHHhcc---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECccCcccc---CCHH-HHHHHHH-----
Confidence 6677766 7999999999987765443 22322 2578999999999986421 1111 1122221
Q ss_pred CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 187 PHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
....++++|++++.|+++.+.+|.+.+.
T Consensus 141 -~~~~~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 141 -KNLQYYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred -cCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 1257899999999999999999987653
No 172
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.84 E-value=4.4e-20 Score=136.00 Aligned_cols=154 Identities=23% Similarity=0.248 Sum_probs=94.8
Q ss_pred EEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR 119 (219)
Q Consensus 44 i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (219)
++|++|+|||||+|+|++... .....+++|.... .... +..+.++||||+....... + .+...++...
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~--~----~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG--R----GLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC--C----CccHHHHHHH
Confidence 589999999999999999742 3444555554432 2222 4578999999974321111 1 1111222222
Q ss_pred CCccEEEEEEeCCCCC------CcccHH-HHHHhc----------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHH
Q 027757 120 ESLVGVLLLIDASVPP------QKIDLD-CANWLG----------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI 182 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~------~~~~~~-~~~~~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 182 (219)
+.+|++++|+|+.++. +..+.. ....+. ..++|+++|+||+|+.... ........
T Consensus 73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-------~~~~~~~~- 144 (176)
T cd01881 73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE-------ELEEELVR- 144 (176)
T ss_pred hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh-------HHHHHHHH-
Confidence 3389999999999873 222211 111111 1378999999999997542 12221111
Q ss_pred HhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
........+++++||+++.|++++++++.+.
T Consensus 145 ~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 1112234679999999999999999998764
No 173
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-19 Score=139.43 Aligned_cols=177 Identities=21% Similarity=0.215 Sum_probs=117.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
.....|+++|+||+|||||.|.++|.+ ...++....||+... .+. ...+++|.||||+...... .......++..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~k-v~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~-r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQK-VSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH-RRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCc-cccccccccceeeeeeEEEecCceEEEEecCCcccccchh-hhHHHHHHhhh
Confidence 446789999999999999999999984 666666666666532 222 3448999999997533221 12222234445
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-CCCcEEEEEEcccccccccCCC------chHh----HHHHHHHH
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-NNIPLTFVFTKCDKMKVAKGRR------PDEN----IKSFQQLI 182 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~------~~~~----~~~~~~~~ 182 (219)
.+....+.||.+++|+|+++.-....-.++..+++ .++|.++|+||+|........- .... ..++.+.+
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f 227 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF 227 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence 66666777999999999997545555556666665 6799999999999765421000 0000 11112211
Q ss_pred Hh-----------cCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 183 RE-----------NYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 183 ~~-----------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.. .+....++|++||++|.|++++.+||...+.
T Consensus 228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 11 0112346999999999999999999977543
No 174
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=135.41 Aligned_cols=158 Identities=19% Similarity=0.236 Sum_probs=122.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC--eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK--SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
...||+++|.+|+|||+|..+|.+..|...+.++...+........+. .+.++||+| ++.|..+.+.+
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g----------~~~~~~~~~~~ 71 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAG----------QEEFSAMRDLY 71 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCC----------cccChHHHHHh
Confidence 357999999999999999999999989999888888554433322222 466888887 55567788888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. .|++++|+++++..++.... +.+.+ .....|+++|+||+|+... +.+..++...+...+. +
T Consensus 72 ~~~---~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~--R~V~~eeg~~la~~~~------~ 140 (196)
T KOG0395|consen 72 IRN---GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE--RQVSEEEGKALARSWG------C 140 (196)
T ss_pred hcc---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc--cccCHHHHHHHHHhcC------C
Confidence 888 89999999999998887742 22333 1256899999999999875 6666677666644433 6
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+++++||+...+++++|..|.+....
T Consensus 141 ~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 141 AFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 79999999999999999999886654
No 175
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.83 E-value=3.7e-19 Score=156.33 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=112.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
..+|+++|++|+|||||+|+|++.. ..+.+.+++|.+..... .+.++.++||||+............-+.+...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 4689999999999999999999974 36778888887654332 234799999999653221111000012233444
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
+.. ..+|++++|+|+++.... ..+..++.+.++|+++++||+|+.+... ...+.+++.+.++ ++++++
T Consensus 81 l~~-~~aD~vI~VvDat~ler~--l~l~~ql~e~giPvIvVlNK~Dl~~~~~---i~id~~~L~~~LG------~pVvpi 148 (772)
T PRK09554 81 ILS-GDADLLINVVDASNLERN--LYLTLQLLELGIPCIVALNMLDIAEKQN---IRIDIDALSARLG------CPVIPL 148 (772)
T ss_pred Hhc-cCCCEEEEEecCCcchhh--HHHHHHHHHcCCCEEEEEEchhhhhccC---cHHHHHHHHHHhC------CCEEEE
Confidence 432 337999999999985443 4445666778999999999999864321 1233444444433 689999
Q ss_pred ecCCCCChHHHHHHHHHHH
Q 027757 196 SSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~~ 214 (219)
|++++.|++++++.+.+..
T Consensus 149 SA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EeecCCCHHHHHHHHHHhh
Confidence 9999999999999998764
No 176
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.83 E-value=3.3e-19 Score=133.35 Aligned_cols=149 Identities=19% Similarity=0.266 Sum_probs=99.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccc--------------ccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKEL--------------ALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAP 101 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~ 101 (219)
..+|+++|..++|||||+++|++.... .......+.|....... .+.++.++||||+.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~----- 76 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA----- 76 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-----
Confidence 468999999999999999999864100 00111334444432222 23478999999963
Q ss_pred cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhH-HHHH
Q 027757 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENI-KSFQ 179 (219)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~-~~~~ 179 (219)
.+.....+....+|++++|+|+..+...++.+.+..+...++| +++++||+|+...+.. .+.. +++.
T Consensus 77 --------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~---~~~~~~~i~ 145 (195)
T cd01884 77 --------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEEL---LELVEMEVR 145 (195)
T ss_pred --------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHH---HHHHHHHHH
Confidence 2444445555669999999999988777777888888888887 7899999998642211 1112 1233
Q ss_pred HHHHhcC--CCCCCeEEeecCCCCCh
Q 027757 180 QLIRENY--PHHPPWIMTSSVTGLGR 203 (219)
Q Consensus 180 ~~~~~~~--~~~~~~~~~Sa~~~~~v 203 (219)
+.+.... ...++++++||++|.|.
T Consensus 146 ~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 146 ELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHhcccccCCeEEEeeCccccCC
Confidence 3333221 13578999999999985
No 177
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.83 E-value=2.6e-19 Score=136.60 Aligned_cols=156 Identities=21% Similarity=0.232 Sum_probs=102.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccccccc------------CCCCeeEE------------------------e--eEE-
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTS------------KKPGKTQL------------------------I--NHF- 81 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~------------~~~~~t~~------------------------~--~~~- 81 (219)
||+++|+.++|||||+++|....+..... -..|.+.. . ..+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999999643211000 00010000 0 001
Q ss_pred EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc--CCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEc
Q 027757 82 LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR--ESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK 159 (219)
Q Consensus 82 ~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 159 (219)
..+..+.++||||+. .+.+..++.. ..+|++++|+|+..+....+.+.+.++...++|+++|+||
T Consensus 81 ~~~~~i~liDtpG~~-------------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK 147 (224)
T cd04165 81 KSSKLVTFIDLAGHE-------------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTK 147 (224)
T ss_pred eCCcEEEEEECCCcH-------------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEC
Confidence 123468999999963 2222233332 2479999999999988888888899999999999999999
Q ss_pred ccccccccCCCchHhHHHHHHHHHh-----------------------cCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757 160 CDKMKVAKGRRPDENIKSFQQLIRE-----------------------NYPHHPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 160 ~D~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
+|+.+... .....+++.+.+.. .+...+|+|.+||.+|.|+++|.+.|..
T Consensus 148 ~D~~~~~~---~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 148 IDLAPANI---LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccccCHHH---HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 99865321 11222222222221 1223468999999999999999998865
No 178
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.83 E-value=5.5e-19 Score=137.09 Aligned_cols=163 Identities=20% Similarity=0.173 Sum_probs=122.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cC-eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NK-SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...+.|+|.|.||+|||||++.+++. .+.+.+++.||+.+...+. ++ .+.++||||+.+......++.+..++..
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~A--kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTA--KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcC--CCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 46789999999999999999999997 4889999999987654443 33 7999999999888888888888778777
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH---HHHHHhcc-CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL---DCANWLGR-NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~---~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
..+.. ++|+|++|++......-. .++..++. .+.|+++|+||+|..+. +..++....+.....
T Consensus 244 L~hl~----~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~-------e~~~~~~~~~~~~~~-- 310 (346)
T COG1084 244 LRHLA----GVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE-------EKLEEIEASVLEEGG-- 310 (346)
T ss_pred HHHhc----CeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch-------hHHHHHHHHHHhhcc--
Confidence 65544 889999999974333322 33333333 66899999999998864 344554444444333
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.....+++..+.+++.+.+.+...+
T Consensus 311 ~~~~~~~~~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 311 EEPLKISATKGCGLDKLREEVRKTA 335 (346)
T ss_pred ccccceeeeehhhHHHHHHHHHHHh
Confidence 2457888888899998887776653
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.83 E-value=3.3e-19 Score=153.03 Aligned_cols=161 Identities=23% Similarity=0.273 Sum_probs=107.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
..|+++|.+++|||||+++|++.. .........+.|.+..+ +.. +..+.+||+||+. .+...+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------------~f~~~~ 67 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------------KFISNA 67 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------------HHHHHH
Confidence 368999999999999999999852 01111223445544332 222 2478999999952 233344
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHHHHHHHhc-CCCCCCeE
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN-YPHHPPWI 193 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 193 (219)
......+|++++|+|++++...+..+.+.++...++| +++|+||+|+.+.+..+...+++.++ +... +...++++
T Consensus 68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~---l~~~~~~~~~~ii 144 (581)
T TIGR00475 68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQI---LNSYIFLKNAKIF 144 (581)
T ss_pred HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHH---HHHhCCCCCCcEE
Confidence 4444458999999999987666666666677777888 99999999997642111111112222 2221 11247899
Q ss_pred EeecCCCCChHHHHHHHHHHHhh
Q 027757 194 MTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 194 ~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++||++|.|++++++++.+....
T Consensus 145 ~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 145 KTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEeCCCCCCchhHHHHHHHHHHh
Confidence 99999999999999999887654
No 180
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.83 E-value=3.3e-19 Score=150.26 Aligned_cols=158 Identities=24% Similarity=0.300 Sum_probs=122.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCC-CCCCCCcchhhhHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGY-GFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~-~~~~~~~~~~~~~~~~~~~ 114 (219)
..+|+++|+||+|||||+|+|+|. ...+.+-+|+|.+..+... +.++.++|+||. .....+.+ +.....
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~--~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D-----E~Var~ 75 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGA--NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED-----EKVARD 75 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhcc--CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch-----HHHHHH
Confidence 457999999999999999999996 5889999999987654433 346899999994 44444333 445566
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
|+.. ..+|++|-|+|+++-+.. +.+.-++.+.+.|+++++|++|.....+... +.+++.+.++ +|+++
T Consensus 76 ~ll~-~~~D~ivnVvDAtnLeRn--LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~I---D~~~L~~~LG------vPVv~ 143 (653)
T COG0370 76 FLLE-GKPDLIVNVVDATNLERN--LYLTLQLLELGIPMILALNMIDEAKKRGIRI---DIEKLSKLLG------VPVVP 143 (653)
T ss_pred HHhc-CCCCEEEEEcccchHHHH--HHHHHHHHHcCCCeEEEeccHhhHHhcCCcc---cHHHHHHHhC------CCEEE
Confidence 6654 336999999999986543 5556677789999999999999887655544 3445555555 79999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q 027757 195 TSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+||++|.|++|+++.+.+...
T Consensus 144 tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 144 TVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred EEeecCCCHHHHHHHHHHhcc
Confidence 999999999999999877544
No 181
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.83 E-value=1.5e-19 Score=158.15 Aligned_cols=158 Identities=22% Similarity=0.282 Sum_probs=110.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
....+.|+|+|..++|||||+++|.+..+.. ....+.|.++..+.. +..+.+|||||+.. |..++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~--~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~----------F~~m~ 354 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAA--GEAGGITQHIGAYQVETNGGKITFLDTPGHEA----------FTAMR 354 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccc--cccCceeeeccEEEEEECCEEEEEEECCCCcc----------chhHH
Confidence 4567899999999999999999998864332 223455555443322 35799999999642 22333
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHH---HHhcCCCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL---IRENYPHH 189 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 189 (219)
... ...+|++|+|+|+.++...+..+.+..+...++|+++++||+|+.... ...+...+.. +...++..
T Consensus 355 ~rg---a~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-----~e~V~~eL~~~~~~~e~~g~~ 426 (787)
T PRK05306 355 ARG---AQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-----PDRVKQELSEYGLVPEEWGGD 426 (787)
T ss_pred Hhh---hhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-----HHHHHHHHHHhcccHHHhCCC
Confidence 333 344899999999998877777777788778899999999999996431 1111111111 11123345
Q ss_pred CCeEEeecCCCCChHHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
++++++||++|.|+++++++|...
T Consensus 427 vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 427 TIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred ceEEEEeCCCCCCchHHHHhhhhh
Confidence 789999999999999999998754
No 182
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=7.5e-19 Score=143.93 Aligned_cols=171 Identities=22% Similarity=0.231 Sum_probs=134.9
Q ss_pred eeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCC
Q 027757 24 FVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAK 99 (219)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~ 99 (219)
..++...........+|-|.|||....|||||+.+|-+... ...-.-|.|.+++.+.+ +..++|+||||+
T Consensus 138 ~~~~~~a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH---- 211 (683)
T KOG1145|consen 138 VAPQPEADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH---- 211 (683)
T ss_pred cccCCccCHhhcCCCCCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcH----
Confidence 33333444444456789999999999999999999998742 23445567888766654 347999999996
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ 179 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 179 (219)
..|..+.-|+++.+|.+++|+.+.++...+..+.++..+..+.|+++.+||||.... ..+...
T Consensus 212 ---------aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a--------~pekv~ 274 (683)
T KOG1145|consen 212 ---------AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA--------NPEKVK 274 (683)
T ss_pred ---------HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC--------CHHHHH
Confidence 466777778888899999999999999999999999999999999999999997643 344444
Q ss_pred HHHHh------cCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 180 QLIRE------NYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 180 ~~~~~------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+++.. .++.+.+++++||++|.|++.|.+.+.-++..|
T Consensus 275 ~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~m 318 (683)
T KOG1145|consen 275 RELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVM 318 (683)
T ss_pred HHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHh
Confidence 44433 456678999999999999999999988776654
No 183
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.82 E-value=2.5e-18 Score=129.16 Aligned_cols=157 Identities=20% Similarity=0.243 Sum_probs=103.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--------CeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--------KSWYIVDLPGYGFAKAPDVTRMDWSSF 111 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--------~~~~liDtpg~~~~~~~~~~~~~~~~~ 111 (219)
+||+++|.+|+|||||++++++..+.....++.+.+........+ ..+.+|||+| ++.|..+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG----------~e~~~~l 70 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGG----------SESVKST 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCC----------chhHHHH
Confidence 489999999999999999999987666666666654443333221 2467888876 4567888
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-------------------------CCCcEEEEEEcccccccc
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-------------------------NNIPLTFVFTKCDKMKVA 166 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------------------------~~~p~iiv~nK~D~~~~~ 166 (219)
...+++. +|++|+|+|++++.++.... .|+.+ .++|+++|+||+|+.+..
T Consensus 71 ~~~~yr~---ad~iIlVyDvtn~~Sf~~l~--~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 71 RAVFYNQ---VNGIILVHDLTNRKSSQNLQ--RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred HHHHhCc---CCEEEEEEECcChHHHHHHH--HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 8999998 99999999999988876542 33221 368999999999997642
Q ss_pred cCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCC-------ChHHHHHHHHHHHh
Q 027757 167 KGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGL-------GRDELLLHMSQLRN 215 (219)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-------~v~el~~~l~~~~~ 215 (219)
.+..+....-...+...++ .+.++.++.+.. +-..|.+.+.+..+
T Consensus 146 --~~~~~~~~~~~~~ia~~~~--~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (202)
T cd04102 146 --ESSGNLVLTARGFVAEQGN--AEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE 197 (202)
T ss_pred --ccchHHHhhHhhhHHHhcC--CceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence 2222222222223333333 467777777542 44445444444443
No 184
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.81 E-value=1.1e-18 Score=125.77 Aligned_cols=148 Identities=23% Similarity=0.303 Sum_probs=92.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
.+||+++|.+|+|||||++++++.. ......++++..... +..+ ..+.++|+||.. .+..+..
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~ 68 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNK--FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE----------DYRAIRR 68 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC--CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc----------cchHHHH
Confidence 3699999999999999999999975 333333444443322 3333 357889999942 2233444
Q ss_pred HHhhccCCccEEEEEEeCCCC-CCccc------HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757 114 GYFLNRESLVGVLLLIDASVP-PQKID------LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~-~~~~~------~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
.++.. ++.++.++|.... .+..+ ..+.... ..+.|+++++||+|+.... ........+.. .
T Consensus 69 ~~~~~---~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~-~ 136 (161)
T TIGR00231 69 LYYRA---VESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAK-------LKTHVAFLFAK-L 136 (161)
T ss_pred HHHhh---hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcch-------hhHHHHHHHhh-c
Confidence 44444 5666777776654 22111 1111222 2378999999999997642 11122222222 2
Q ss_pred CCCCCeEEeecCCCCChHHHHHHHH
Q 027757 187 PHHPPWIMTSSVTGLGRDELLLHMS 211 (219)
Q Consensus 187 ~~~~~~~~~Sa~~~~~v~el~~~l~ 211 (219)
. ..+++++||+++.|+.+++++|.
T Consensus 137 ~-~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 137 N-GEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred c-CCceEEeecCCCCCHHHHHHHhh
Confidence 2 25799999999999999999874
No 185
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.81 E-value=4.1e-20 Score=128.41 Aligned_cols=159 Identities=19% Similarity=0.204 Sum_probs=117.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
+...+|++++|..=+|||||+-+++.++|..+...+..-..- +.++.+-| .-.....|++.||+.|+.+.+-|
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~------~kk~n~ed-~ra~L~IWDTAGQErfHALGPIY 82 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQ------NKKVNVED-CRADLHIWDTAGQERFHALGPIY 82 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHh------hccccccc-ceeeeeeeeccchHhhhccCceE
Confidence 345789999999999999999999998777655443321110 11111222 11223455556699999999999
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
|++ ++++++|+|+++..+++. +..|+.+ ..+-++||+||+|+... +.+...+.+...+..+
T Consensus 83 YRg---SnGalLVyDITDrdSFqK--VKnWV~Elr~mlGnei~l~IVGNKiDLEee--R~Vt~qeAe~YAesvG------ 149 (218)
T KOG0088|consen 83 YRG---SNGALLVYDITDRDSFQK--VKNWVLELRTMLGNEIELLIVGNKIDLEEE--RQVTRQEAEAYAESVG------ 149 (218)
T ss_pred EeC---CCceEEEEeccchHHHHH--HHHHHHHHHHHhCCeeEEEEecCcccHHHh--hhhhHHHHHHHHHhhc------
Confidence 999 899999999999888754 4556553 56889999999999864 5566666677766666
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
..++++||+.+.|+.|+|+.|...+
T Consensus 150 A~y~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 150 ALYMETSAKDNVGISELFESLTAKM 174 (218)
T ss_pred hhheecccccccCHHHHHHHHHHHH
Confidence 4789999999999999999887643
No 186
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=5e-19 Score=134.13 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=90.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccc------------------------------cCCCCeeEEeeEE---EecCeE
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALT------------------------------SKKPGKTQLINHF---LVNKSW 87 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~------------------------------~~~~~~t~~~~~~---~~~~~~ 87 (219)
+|+|+|.+|+|||||+++|+... .... ....++|.+.... +.+.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDS-KSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence 68999999999999999998652 1111 0113444443222 234479
Q ss_pred EEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-cEEEEEEcccccccc
Q 027757 88 YIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-PLTFVFTKCDKMKVA 166 (219)
Q Consensus 88 ~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~ 166 (219)
.++||||+. .|. .........+|++|+|+|++++..........++...+. ++++|+||+|+....
T Consensus 80 ~liDTpG~~----------~~~---~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~ 146 (208)
T cd04166 80 IIADTPGHE----------QYT---RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS 146 (208)
T ss_pred EEEECCcHH----------HHH---HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC
Confidence 999999952 111 122223344899999999998766555554555555554 577899999986421
Q ss_pred cCCCchHhHHHHH---HHHHhcCC-CCCCeEEeecCCCCChHHH
Q 027757 167 KGRRPDENIKSFQ---QLIRENYP-HHPPWIMTSSVTGLGRDEL 206 (219)
Q Consensus 167 ~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~Sa~~~~~v~el 206 (219)
....+... +.+...++ ...+++++||++|.|+.+.
T Consensus 147 -----~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 147 -----EEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred -----HHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 11122221 22222222 2357999999999998753
No 187
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.81 E-value=3.3e-19 Score=122.82 Aligned_cols=113 Identities=35% Similarity=0.442 Sum_probs=80.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
+|+|+|.+|+|||||+|+|++. ........+++|..... +..+ ..+.++||||+......... ......+++
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~----~~~~~~~~~ 75 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDND----GKEIRKFLE 75 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHH----HHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHH----HHHHHHHHH
Confidence 6999999999999999999996 46667777777776533 2233 36799999998643221111 112333444
Q ss_pred ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEc
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK 159 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 159 (219)
....+|++++|+|++++....+..+++++. .++|+++|+||
T Consensus 76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 445589999999988754545567777786 78999999998
No 188
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.80 E-value=2.4e-18 Score=147.86 Aligned_cols=156 Identities=22% Similarity=0.263 Sum_probs=104.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc-------cccccc------CCCCeeEEeeEE---Ee--c---CeEEEEeCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKK-------ELALTS------KKPGKTQLINHF---LV--N---KSWYIVDLPGYGF 97 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~-------~~~~~~------~~~~~t~~~~~~---~~--~---~~~~liDtpg~~~ 97 (219)
..+++|+|..++|||||+++|+... +...+. ...+.|...... +. + ..+.+|||||+.
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~- 81 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV- 81 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH-
Confidence 4579999999999999999998742 111111 122444432211 11 2 368999999964
Q ss_pred CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHH
Q 027757 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKS 177 (219)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~ 177 (219)
.|......+++. +|++|+|+|++++.+.++...+..+...++|+++|+||+|+.... .....++
T Consensus 82 ---------dF~~~v~~~l~~---aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~----~~~~~~e 145 (595)
T TIGR01393 82 ---------DFSYEVSRSLAA---CEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD----PERVKKE 145 (595)
T ss_pred ---------HHHHHHHHHHHh---CCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC----HHHHHHH
Confidence 234455566666 899999999999877766655555555789999999999986421 1111223
Q ss_pred HHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 178 FQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+.+.++ .....++++||++|.|+++++++|.+.+
T Consensus 146 l~~~lg---~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 146 IEEVIG---LDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred HHHHhC---CCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 322222 1113589999999999999999998754
No 189
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.80 E-value=4.1e-18 Score=146.82 Aligned_cols=159 Identities=22% Similarity=0.253 Sum_probs=108.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 41 EFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
-|+++|..++|||||+++|++.. .........+.|.+..+... +..+.+|||||+. .+....
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------------~fi~~m 68 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------------KFLSNM 68 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------------HHHHHH
Confidence 58899999999999999999852 11122233466655443222 3367899999962 233444
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
......+|++++|+|+.++...++.+.+.++...++| +++|+||+|+.+.+.. ....+++.+.+........++++
T Consensus 69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~---~~v~~ei~~~l~~~~~~~~~ii~ 145 (614)
T PRK10512 69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARI---AEVRRQVKAVLREYGFAEAKLFV 145 (614)
T ss_pred HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHH---HHHHHHHHHHHHhcCCCCCcEEE
Confidence 4445558999999999998777777777777777777 5799999999753211 11122222223222223468999
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q 027757 195 TSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+||++|.|+++++++|.+...
T Consensus 146 VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 146 TAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred EeCCCCCCCHHHHHHHHHhhc
Confidence 999999999999999987654
No 190
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.80 E-value=2.2e-18 Score=129.52 Aligned_cols=172 Identities=13% Similarity=0.083 Sum_probs=107.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
++|+++|.+|+|||||+|++++...........++|...... ..+..+.++||||+....... ......+...+.
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~--~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP--EQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh--HHHHHHHHHHHH
Confidence 479999999999999999999974332222233444443222 245589999999987543211 111234444555
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
.....+|++++|+++.+ .+..+...++++.+ .-.++++|+|++|.......+..........+.+-..++ -+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~--~r 155 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG--GR 155 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC--Ce
Confidence 55566899999999988 66667677777664 126899999999977543211111111112222222222 24
Q ss_pred eEEee-----cCCCCChHHHHHHHHHHHhh
Q 027757 192 WIMTS-----SVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 192 ~~~~S-----a~~~~~v~el~~~l~~~~~~ 216 (219)
++.++ +..+.++++|++.+.+.+..
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 54554 45578899999999888764
No 191
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.80 E-value=4.4e-18 Score=132.69 Aligned_cols=191 Identities=22% Similarity=0.246 Sum_probs=137.6
Q ss_pred cccccccccceeeeeccCCCCCCCCCCC--------------CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE
Q 027757 12 PYAGHSQIKEVEFVKSSGRAKDCPKDDR--------------PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77 (219)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~ 77 (219)
.+.+...+.|..|..+..+.++....+. -.|.++|-|+||||||++.+... .+++..++.||..
T Consensus 118 akGG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~A--kPKIadYpFTTL~ 195 (369)
T COG0536 118 AKGGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAA--KPKIADYPFTTLV 195 (369)
T ss_pred EcCCCCCccchhhcCcccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhc--CCcccCCcccccc
Confidence 3567778889999998888877665443 25788999999999999999996 4888889988887
Q ss_pred eeEE--E--ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc---cc-HHHHHHhcc-
Q 027757 78 INHF--L--VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK---ID-LDCANWLGR- 148 (219)
Q Consensus 78 ~~~~--~--~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~-~~~~~~~~~- 148 (219)
+... . ....|++-|.||+......-.| +-..|++-.+.+.+++.|+|++..... .+ ..+...+..
T Consensus 196 PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G------LG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y 269 (369)
T COG0536 196 PNLGVVRVDGGESFVVADIPGLIEGASEGVG------LGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY 269 (369)
T ss_pred CcccEEEecCCCcEEEecCcccccccccCCC------ccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHh
Confidence 5332 2 2346999999997654333332 334555556667899999999964431 11 111222222
Q ss_pred ----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 149 ----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 149 ----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.++|.++|+||+|+... .++.+.+.+.+.........++ +|+.++.|++++...+.+++...
T Consensus 270 ~~~L~~K~~ivv~NKiD~~~~------~e~~~~~~~~l~~~~~~~~~~~-ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 270 SPKLAEKPRIVVLNKIDLPLD------EEELEELKKALAEALGWEVFYL-ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred hHHhccCceEEEEeccCCCcC------HHHHHHHHHHHHHhcCCCccee-eehhcccCHHHHHHHHHHHHHHh
Confidence 67899999999996543 3667777777776666544444 99999999999999998877654
No 192
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.2e-18 Score=116.94 Aligned_cols=158 Identities=19% Similarity=0.221 Sum_probs=115.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
....+|-+|+|..|+|||+|+..|+.+++.+.-.-+.++........+.++ .+....|++.|+++|+.....|
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgq-------kiklqiwdtagqerfravtrsy 80 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-------KIKLQIWDTAGQERFRAVTRSY 80 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCc-------EEEEEEeecccHHHHHHHHHHH
Confidence 355789999999999999999999998777655555554433222222220 0222445555689999999999
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+++ +.+.++|+|+++..+..++ -.|+.. .+..+++++||.|+... +.+.-++.+++.+..+
T Consensus 81 yrg---aagalmvyditrrstynhl--sswl~dar~ltnpnt~i~lignkadle~q--rdv~yeeak~faeeng------ 147 (215)
T KOG0097|consen 81 YRG---AAGALMVYDITRRSTYNHL--SSWLTDARNLTNPNTVIFLIGNKADLESQ--RDVTYEEAKEFAEENG------ 147 (215)
T ss_pred hcc---ccceeEEEEehhhhhhhhH--HHHHhhhhccCCCceEEEEecchhhhhhc--ccCcHHHHHHHHhhcC------
Confidence 999 7888999999998776554 456553 56678999999999875 5555566666666544
Q ss_pred CCeEEeecCCCCChHHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
..++++||++|.|+++.|-.-.+.
T Consensus 148 l~fle~saktg~nvedafle~akk 171 (215)
T KOG0097|consen 148 LMFLEASAKTGQNVEDAFLETAKK 171 (215)
T ss_pred eEEEEecccccCcHHHHHHHHHHH
Confidence 578999999999999988655443
No 193
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.79 E-value=2.1e-18 Score=120.53 Aligned_cols=159 Identities=21% Similarity=0.194 Sum_probs=109.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+..++|+++|..||||||++++|.+. ....+.|+.+-... ........+.++|..| |..++++++.||
T Consensus 14 erE~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~Ik-tl~~~~~~L~iwDvGG----------q~~lr~~W~nYf 81 (185)
T KOG0073|consen 14 EREVRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQIK-TLEYKGYTLNIWDVGG----------QKTLRSYWKNYF 81 (185)
T ss_pred hheeEEEEEecCCCCchhHHHHhcCC-CccccCCccceeeE-EEEecceEEEEEEcCC----------cchhHHHHHHhh
Confidence 44789999999999999999999997 34455555542221 1111233555666654 667789999999
Q ss_pred hccCCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc-CCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN-YPHHP 190 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 190 (219)
.. +|++|||+|.+++...++- ++...+.+ ...|++++.||.|+... ...+++.... .+... -...+
T Consensus 82 es---tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~----l~~~~i~~~~-~L~~l~ks~~~ 153 (185)
T KOG0073|consen 82 ES---TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA----LSLEEISKAL-DLEELAKSHHW 153 (185)
T ss_pred hc---cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc----cCHHHHHHhh-CHHHhccccCc
Confidence 99 9999999999987665442 12222222 56899999999998743 1122333221 12222 12457
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++-||+.+|+++.+-++|++....
T Consensus 154 ~l~~cs~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 154 RLVKCSAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred eEEEEeccccccHHHHHHHHHHHHH
Confidence 8999999999999999999987554
No 194
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=9.6e-20 Score=126.65 Aligned_cols=159 Identities=20% Similarity=0.260 Sum_probs=114.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCC-------CCCCCCCcchhhhHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG-------YGFAKAPDVTRMDWSSF 111 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg-------~~~~~~~~~~~~~~~~~ 111 (219)
.+|.+.+|.+|+|||||+-+.+...+..+.-.+.+.......+..+ -.-|| +..+.|++.||++|+++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~-----s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYN-----SSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEe-----ccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 3577889999999999988888776665544444433221111110 01111 12356677779999999
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE 184 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 184 (219)
.-.|++. |=++++++|.++..++. ....|+.+ .+.-+++++||+|+.+. +.+.+.+..++.+.++
T Consensus 84 TTAFfRD---AMGFlLiFDlT~eqSFL--nvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~--R~Vs~~qa~~La~kyg- 155 (219)
T KOG0081|consen 84 TTAFFRD---AMGFLLIFDLTSEQSFL--NVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ--RVVSEDQAAALADKYG- 155 (219)
T ss_pred HHHHHHh---hccceEEEeccchHHHH--HHHHHHHHHHHhhccCCCCEEEEcCccchhhh--hhhhHHHHHHHHHHhC-
Confidence 9999999 88999999999877774 44567664 56779999999999875 4555566666666665
Q ss_pred cCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 185 NYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 185 ~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+|||++||-+|.|+++..+.+...+-
T Consensus 156 -----lPYfETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 156 -----LPYFETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred -----CCeeeeccccCcCHHHHHHHHHHHHH
Confidence 69999999999999998888876543
No 195
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.79 E-value=4.8e-18 Score=127.67 Aligned_cols=168 Identities=21% Similarity=0.199 Sum_probs=103.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC---eeEEeeEEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPG---KTQLINHFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~---~t~~~~~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
+++|+++|.+|+|||||+|+|++...........+ ++.....+.. ...+.++||||+...... ...| +..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~---~~~~--l~~ 75 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP---PDDY--LEE 75 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCC---HHHH--HHH
Confidence 46899999999999999999999643222211111 2222222221 236899999998643221 1111 111
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCC------CchHhHHHHHHHHHhcC-
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGR------RPDENIKSFQQLIRENY- 186 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~- 186 (219)
..+ ..+|++++|.+ +..+..+...++++...+.|+++|+||+|+....... ...+.++++.+.+...+
T Consensus 76 ~~~---~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 150 (197)
T cd04104 76 MKF---SEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ 150 (197)
T ss_pred hCc---cCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence 112 23788888753 3456666677777777889999999999986432211 01223334444443322
Q ss_pred ---CCCCCeEEeecC--CCCChHHHHHHHHHHHhh
Q 027757 187 ---PHHPPWIMTSSV--TGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 187 ---~~~~~~~~~Sa~--~~~~v~el~~~l~~~~~~ 216 (219)
...+++|.+|+. .+.|+..|.+.+...+-+
T Consensus 151 ~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 151 EAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred HcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 345689999998 578999999999876543
No 196
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=8.4e-18 Score=144.21 Aligned_cols=162 Identities=22% Similarity=0.298 Sum_probs=103.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-------------c--------CeEEEEeCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-------------N--------KSWYIVDLPGYG 96 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-------------~--------~~~~liDtpg~~ 96 (219)
..|.|+++|.+++|||||+++|.+.. .....+ .+.|.++..... . ..+.+|||||+.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~-v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTA-VAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc-cccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 46789999999999999999998863 221111 122222211110 0 126899999953
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCC-------
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGR------- 169 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~------- 169 (219)
.|..++...+.. +|++++|+|++++...+..+.+..+...++|+++++||+|+...-...
T Consensus 83 ----------~f~~~~~~~~~~---aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e 149 (586)
T PRK04004 83 ----------AFTNLRKRGGAL---ADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLE 149 (586)
T ss_pred ----------HHHHHHHHhHhh---CCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHH
Confidence 233344444444 899999999998766666666777777899999999999985311000
Q ss_pred -------CchHh----HHHHHHHHHh------------cCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 170 -------RPDEN----IKSFQQLIRE------------NYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 170 -------~~~~~----~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
...+. +.+....+.. .+....+++++||++|.|++++++.+....
T Consensus 150 ~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 150 SIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00111 1111122221 123457899999999999999999886543
No 197
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.79 E-value=4e-18 Score=121.61 Aligned_cols=147 Identities=20% Similarity=0.191 Sum_probs=94.9
Q ss_pred EEcCCCCCHHHHHHHHhcCcc-cccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757 44 ILGRSNVGKSSLINALVRKKE-LALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR 119 (219)
Q Consensus 44 i~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (219)
++|++|+|||||++++++... .....++. ......... .+..+.++|+||.... ......++..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~~~~- 68 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF----------RSLRRLYYRG- 68 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHH----------HhHHHHHhcC-
Confidence 589999999999999999743 12222222 222222222 2447899999995321 2222444444
Q ss_pred CCccEEEEEEeCCCCCCcccHHH-----HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 120 ESLVGVLLLIDASVPPQKIDLDC-----ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~~~~-----~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
+|++++|+|++++.+...... .......+.|+++++||+|+....... . ........ .....++++
T Consensus 69 --~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~----~-~~~~~~~~--~~~~~~~~~ 139 (157)
T cd00882 69 --ADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS----E-EELAEQLA--KELGVPYFE 139 (157)
T ss_pred --CCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH----H-HHHHHHHH--hhcCCcEEE
Confidence 899999999998766554432 233445789999999999987643211 1 10011111 122378999
Q ss_pred eecCCCCChHHHHHHHH
Q 027757 195 TSSVTGLGRDELLLHMS 211 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~ 211 (219)
+|+..+.|+++++++|.
T Consensus 140 ~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 140 TSAKTGENVEELFEELA 156 (157)
T ss_pred EecCCCCChHHHHHHHh
Confidence 99999999999999875
No 198
>COG2262 HflX GTPases [General function prediction only]
Probab=99.79 E-value=6.2e-18 Score=135.00 Aligned_cols=162 Identities=23% Similarity=0.244 Sum_probs=112.1
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE----eeEEEecCeEEEEeCCCCCCCCCCcchhhhHH
Q 027757 34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL----INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWS 109 (219)
Q Consensus 34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~----~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~ 109 (219)
......+.|.++|.+|||||||+|+|++..... .+....|.+ ......+..+.+-||.|+. .+.+......|.
T Consensus 187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~--~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI-~~LP~~LV~AFk 263 (411)
T COG2262 187 RSRSGIPLVALVGYTNAGKSTLFNALTGADVYV--ADQLFATLDPTTRRIELGDGRKVLLTDTVGFI-RDLPHPLVEAFK 263 (411)
T ss_pred hcccCCCeEEEEeeccccHHHHHHHHhccCeec--cccccccccCceeEEEeCCCceEEEecCccCc-ccCChHHHHHHH
Confidence 345678999999999999999999999874222 222222222 1222235689999999976 344555566666
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCcccH----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757 110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDL----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185 (219)
Q Consensus 110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
+..+.. ..+|+++.|+|++++...... +++..+...++|+++|+||+|+.... . ....+...
T Consensus 264 sTLEE~----~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~-------~---~~~~~~~~ 329 (411)
T COG2262 264 STLEEV----KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE-------E---ILAELERG 329 (411)
T ss_pred HHHHHh----hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCch-------h---hhhhhhhc
Confidence 666653 346999999999998554442 34444445779999999999988652 1 11111111
Q ss_pred CCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
. ...+++||++|.|+++|++.|.+.+.
T Consensus 330 ~---~~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 330 S---PNPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred C---CCeEEEEeccCcCHHHHHHHHHHHhh
Confidence 1 25899999999999999999988765
No 199
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.1e-17 Score=137.65 Aligned_cols=157 Identities=22% Similarity=0.291 Sum_probs=125.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec------CeEEEEeCCCCCCCCCCcchhhhHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN------KSWYIVDLPGYGFAKAPDVTRMDWSS 110 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~------~~~~liDtpg~~~~~~~~~~~~~~~~ 110 (219)
...|-|++||....|||||+..+-+.+ -...-.-+.|.++..+... ..++|+||||+ +.
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~--Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-------------eA 67 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-------------EA 67 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCc--cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH-------------HH
Confidence 346889999999999999999999874 3334455678887665543 37999999997 56
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH------h
Q 027757 111 FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR------E 184 (219)
Q Consensus 111 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~------~ 184 (219)
|..+.-|+.+.+|.+|+|+|+.++...+..+.+..++..+.|+++++||+|+.+. +......++. .
T Consensus 68 Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~--------np~~v~~el~~~gl~~E 139 (509)
T COG0532 68 FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA--------NPDKVKQELQEYGLVPE 139 (509)
T ss_pred HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC--------CHHHHHHHHHHcCCCHh
Confidence 7777788888899999999999999999999999999999999999999999854 2222233322 2
Q ss_pred cCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 185 NYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 185 ~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.|+....++++||++|.|+++|++.+.-.++.
T Consensus 140 ~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 140 EWGGDVIFVPVSAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred hcCCceEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 44556789999999999999999998765543
No 200
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.78 E-value=5.2e-18 Score=140.47 Aligned_cols=160 Identities=20% Similarity=0.237 Sum_probs=101.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccccc--ccCCCCeeEEeeE----------------E-E------------ecCe
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELAL--TSKKPGKTQLINH----------------F-L------------VNKS 86 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~--~~~~~~~t~~~~~----------------~-~------------~~~~ 86 (219)
..++|+++|..++|||||+++|.+. +... .....+.|..... + . ....
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~-~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGV-WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCe-ecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999875 2111 0111111111110 0 0 1246
Q ss_pred EEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccCC-CcEEEEEEcccccc
Q 027757 87 WYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRNN-IPLTFVFTKCDKMK 164 (219)
Q Consensus 87 ~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~ 164 (219)
+.++||||+. .+...++.....+|++|+|+|++++. ..+..+.+..+...+ .|+++++||+|+.+
T Consensus 82 i~liDtPGh~-------------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~ 148 (406)
T TIGR03680 82 VSFVDAPGHE-------------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS 148 (406)
T ss_pred EEEEECCCHH-------------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence 8999999952 23344444444589999999999865 444455555555544 46899999999975
Q ss_pred cccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 165 VAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.+.. .+..+++.+.+...+...++++++||++|.|+++++++|...+
T Consensus 149 ~~~~---~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 149 KEKA---LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHHH---HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 4211 1112222222222223357899999999999999999998753
No 201
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.78 E-value=7.5e-18 Score=139.50 Aligned_cols=161 Identities=19% Similarity=0.249 Sum_probs=105.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccc--cccCCCCeeEEeeE----------------EE-------------ecC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELA--LTSKKPGKTQLINH----------------FL-------------VNK 85 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~--~~~~~~~~t~~~~~----------------~~-------------~~~ 85 (219)
...++|+++|..++|||||+.+|.+. +.. ......+.|..... +. ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 34688999999999999999999774 111 11112233332211 00 024
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccCCC-cEEEEEEccccc
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRNNI-PLTFVFTKCDKM 163 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~-p~iiv~nK~D~~ 163 (219)
.+.++||||. ..+...++.....+|++++|+|++++. .....+.+.++...+. |+++|+||+|+.
T Consensus 86 ~i~liDtPG~-------------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 86 RVSFVDAPGH-------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred EEEEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 6899999994 245566777766789999999999865 4444555555555554 689999999997
Q ss_pred ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+.+.. ....+++...+........+++++||+++.|+++++++|.+.+
T Consensus 153 ~~~~~---~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 153 SKERA---LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred cchhH---HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 64211 1112222222222222347899999999999999999998754
No 202
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.78 E-value=9.6e-18 Score=144.22 Aligned_cols=151 Identities=25% Similarity=0.255 Sum_probs=103.8
Q ss_pred cCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE--E-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCc
Q 027757 46 GRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF--L-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESL 122 (219)
Q Consensus 46 G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~--~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (219)
|++|+|||||+|++++.. ..+.+.+++|.+.... . .+..+.++||||......... + +.+...++.. ..+
T Consensus 1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~---e~v~~~~l~~-~~a 73 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-E---EEVARDYLLN-EKP 73 (591)
T ss_pred CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch-H---HHHHHHHHhh-cCC
Confidence 899999999999999974 4567788888765432 2 234789999999643221111 1 2334444432 347
Q ss_pred cEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCC
Q 027757 123 VGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLG 202 (219)
Q Consensus 123 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 202 (219)
|++++|+|+++... .......+.+.++|+++|+||+|+.+.... ..+.+++.+.+ + .+++++||++|.|
T Consensus 74 DvvI~VvDat~ler--~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i---~~d~~~L~~~l----g--~pvv~tSA~tg~G 142 (591)
T TIGR00437 74 DLVVNVVDASNLER--NLYLTLQLLELGIPMILALNLVDEAEKKGI---RIDEEKLEERL----G--VPVVPTSATEGRG 142 (591)
T ss_pred CEEEEEecCCcchh--hHHHHHHHHhcCCCEEEEEehhHHHHhCCC---hhhHHHHHHHc----C--CCEEEEECCCCCC
Confidence 99999999997543 234444555678999999999998654321 12233333333 2 6899999999999
Q ss_pred hHHHHHHHHHHH
Q 027757 203 RDELLLHMSQLR 214 (219)
Q Consensus 203 v~el~~~l~~~~ 214 (219)
++++++++.+..
T Consensus 143 i~eL~~~i~~~~ 154 (591)
T TIGR00437 143 IERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 203
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.78 E-value=1.2e-17 Score=143.70 Aligned_cols=157 Identities=22% Similarity=0.220 Sum_probs=104.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-c------ccc------cCCCCeeEEee---EEEe-----cCeEEEEeCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKE-L------ALT------SKKPGKTQLIN---HFLV-----NKSWYIVDLPGY 95 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-~------~~~------~~~~~~t~~~~---~~~~-----~~~~~liDtpg~ 95 (219)
....+++|+|..++|||||+++|+...- . ..+ ....+.|.... ..+. +..+.+|||||+
T Consensus 5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh 84 (600)
T PRK05433 5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH 84 (600)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence 3466899999999999999999986310 0 001 11223333221 1111 236899999996
Q ss_pred CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhH
Q 027757 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENI 175 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 175 (219)
.. |...+..+++. +|++|+|+|++++...++...+.++...++|+++|+||+|+.... .
T Consensus 85 ~d----------F~~~v~~sl~~---aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~--------~ 143 (600)
T PRK05433 85 VD----------FSYEVSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD--------P 143 (600)
T ss_pred HH----------HHHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc--------H
Confidence 42 23344555666 899999999999877766666666666789999999999986431 1
Q ss_pred HHHHHHHHhcCCC-CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 176 KSFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 176 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++..+.+...++. ...++++||++|.|+++++++|.+.+
T Consensus 144 ~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 144 ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 1122222222221 13589999999999999999998754
No 204
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=6.9e-18 Score=139.23 Aligned_cols=162 Identities=20% Similarity=0.254 Sum_probs=107.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccc--------------ccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKEL--------------ALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAK 99 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~ 99 (219)
....+|+++|..++|||||+++|++.... .......+.|.+...... +..+.++||||+.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~--- 86 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA--- 86 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH---
Confidence 34688999999999999999999873100 011123455554433332 3478999999952
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHH-H
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIK-S 177 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~-~ 177 (219)
.+....+.+...+|++++|+|+.++...++.+.+.++...++| +++++||+|+.+.++. .+.+. +
T Consensus 87 ----------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~---~~~i~~~ 153 (394)
T PRK12736 87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEEL---LELVEME 153 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHH---HHHHHHH
Confidence 3344555666668999999999988777777888888888888 6788999998743211 11111 2
Q ss_pred HHHHHHhcC--CCCCCeEEeecCCCC--------ChHHHHHHHHHHH
Q 027757 178 FQQLIRENY--PHHPPWIMTSSVTGL--------GRDELLLHMSQLR 214 (219)
Q Consensus 178 ~~~~~~~~~--~~~~~~~~~Sa~~~~--------~v~el~~~l~~~~ 214 (219)
+.+.+.... ....+++++||++|. +++++++.+.+.+
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 154 VRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 222222211 124689999999983 5778888776643
No 205
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.78 E-value=4.6e-18 Score=141.85 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=96.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccccc------------------------------ccCCCCeeEEeeEEEe---
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELAL------------------------------TSKKPGKTQLINHFLV--- 83 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~------------------------------~~~~~~~t~~~~~~~~--- 83 (219)
...++|+++|.+++|||||+++|+... -.. .....++|.+......
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~-g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYET-GAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHc-CCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 346789999999999999999999542 110 1124566666544333
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC--CCCcccHHHHHHhccCCC-cEEEEEEcc
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV--PPQKIDLDCANWLGRNNI-PLTFVFTKC 160 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~--~~~~~~~~~~~~~~~~~~-p~iiv~nK~ 160 (219)
+..+.++||||+.. +..........+|++|+|+|+++ .........+.++...+. |+++++||+
T Consensus 83 ~~~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~ 149 (425)
T PRK12317 83 KYYFTIVDCPGHRD-------------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKM 149 (425)
T ss_pred CeEEEEEECCCccc-------------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcc
Confidence 44799999999631 11222233445899999999998 555555555555555554 699999999
Q ss_pred cccccccCCCchHhHHHHHHHHHhcC-C-CCCCeEEeecCCCCChHHH
Q 027757 161 DKMKVAKGRRPDENIKSFQQLIRENY-P-HHPPWIMTSSVTGLGRDEL 206 (219)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~~v~el 206 (219)
|+..... .......+++.+.+.... . ...+++++||++|.|++++
T Consensus 150 Dl~~~~~-~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 150 DAVNYDE-KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred ccccccH-HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 9875210 000111122222222111 1 1367999999999999873
No 206
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.77 E-value=1.2e-17 Score=126.04 Aligned_cols=155 Identities=21% Similarity=0.308 Sum_probs=96.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
++|+++|++|+|||||+++|....+....++. ......+.. +..+.+||+||.. .+......
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~---~~~~~~~~~~~~~~~~~~~l~D~pG~~----------~~~~~~~~ 67 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSI---EPNVATFILNSEGKGKKFRLVDVPGHP----------KLRDKLLE 67 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCcE---eecceEEEeecCCCCceEEEEECCCCH----------HHHHHHHH
Confidence 47999999999999999999987443332222 112222222 3468999999953 23445556
Q ss_pred HhhccCCc-cEEEEEEeCCCCC-CcccHHHHHHhc---------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 115 YFLNRESL-VGVLLLIDASVPP-QKIDLDCANWLG---------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 115 ~~~~~~~~-d~vi~v~d~~~~~-~~~~~~~~~~~~---------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
+++. + +++|||+|+.+.. +..+ ...++. ..++|+++++||+|+..........+.++..+..+.
T Consensus 68 ~~~~---~~~~vV~VvD~~~~~~~~~~--~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~ 142 (203)
T cd04105 68 TLKN---SAKGIVFVVDSATFQKNLKD--VAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLR 142 (203)
T ss_pred HHhc---cCCEEEEEEECccchhHHHH--HHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHH
Confidence 6666 5 9999999999863 2221 122211 258999999999998765433323333333222211
Q ss_pred h------------------------------cCCCCCCeEEeecCCCC-ChHHHHHHHHH
Q 027757 184 E------------------------------NYPHHPPWIMTSSVTGL-GRDELLLHMSQ 212 (219)
Q Consensus 184 ~------------------------------~~~~~~~~~~~Sa~~~~-~v~el~~~l~~ 212 (219)
. +....+.++++|++.+. |++++.+||.+
T Consensus 143 ~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 143 ESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred HHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 1 00113457788888766 69999999865
No 207
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.77 E-value=7.3e-18 Score=130.06 Aligned_cols=157 Identities=24% Similarity=0.251 Sum_probs=108.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC----eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK----SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
...|.++|.||||||||+|++...+ +.+..+..||..+....+.+ ++.+-|.||+........| +.-.
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkG------lG~~ 267 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKG------LGYK 267 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCc------ccHH
Confidence 3568899999999999999999974 67888888887654333322 5899999997543222222 2345
Q ss_pred HhhccCCccEEEEEEeCCCC---CCcccHHHH-HHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757 115 YFLNRESLVGVLLLIDASVP---PQKIDLDCA-NWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~-~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
|++-++.++.++||+|.+.+ .-....+.+ ..+. -.+.|.++|.||+|+.+.+ ...++++.+++..
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-----~~~l~~L~~~lq~- 341 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-----KNLLSSLAKRLQN- 341 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-----HHHHHHHHHHcCC-
Confidence 56666668999999999986 222222111 1111 1678999999999986431 1223455554442
Q ss_pred CCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 186 YPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
..++++||++++|+.++++.|.+.
T Consensus 342 ----~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 ----PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred ----CcEEEeeeccccchHHHHHHHhhc
Confidence 359999999999999999988764
No 208
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.76 E-value=4.4e-17 Score=125.28 Aligned_cols=151 Identities=23% Similarity=0.259 Sum_probs=96.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
+|+++|++|+|||||+|+|++.. ......+++|.... ... .+..+.++||||+........ .+....+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~------~~~~~~l~ 73 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK------GRGRQVIA 73 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch------hHHHHHHH
Confidence 78999999999999999999963 33444555554332 222 344788999999643211111 11122222
Q ss_pred ccCCccEEEEEEeCCCCCCcccHHHHHHh--------------------------------------------c------
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLDCANWL--------------------------------------------G------ 147 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~--------------------------------------------~------ 147 (219)
..+.+|++++|+|++++..... .+...+ +
T Consensus 74 ~~~~ad~il~V~D~t~~~~~~~-~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~ 152 (233)
T cd01896 74 VARTADLILMVLDATKPEGHRE-ILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHN 152 (233)
T ss_pred hhccCCEEEEEecCCcchhHHH-HHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeee
Confidence 2344899999999986543111 011111 1
Q ss_pred ---------------------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHH
Q 027757 148 ---------------------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDEL 206 (219)
Q Consensus 148 ---------------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el 206 (219)
...+|+++|+||+|+.+. ++.+.+ .. ..+++++||+++.|++++
T Consensus 153 ~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~----~~----~~~~~~~SA~~g~gi~~l 217 (233)
T cd01896 153 ADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLL----AR----QPNSVVISAEKGLNLDEL 217 (233)
T ss_pred EEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHH----hc----CCCEEEEcCCCCCCHHHH
Confidence 023699999999998653 223322 11 146899999999999999
Q ss_pred HHHHHHHHh
Q 027757 207 LLHMSQLRN 215 (219)
Q Consensus 207 ~~~l~~~~~ 215 (219)
++.+.+.+.
T Consensus 218 ~~~i~~~L~ 226 (233)
T cd01896 218 KERIWDKLG 226 (233)
T ss_pred HHHHHHHhC
Confidence 999988654
No 209
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1.6e-17 Score=126.28 Aligned_cols=173 Identities=23% Similarity=0.242 Sum_probs=117.1
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeE----EeeEEEecCeEEEEeCCCCCCCCCCcchhhhHH
Q 027757 34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ----LINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWS 109 (219)
Q Consensus 34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~----~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~ 109 (219)
.....+.+|+|+|.+|+|||||||+|++. ..+.++....++. .+..+. ...+++|||||++..... ..+++
T Consensus 34 l~~~~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~---D~~~r 108 (296)
T COG3596 34 LTEKEPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDK---DAEHR 108 (296)
T ss_pred hcccCceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhh---hHHHH
Confidence 33455788999999999999999999976 3454443333332 222222 357899999999754321 12233
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEcccccccc-----cC----CCchHhHHHH
Q 027757 110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKMKVA-----KG----RRPDENIKSF 178 (219)
Q Consensus 110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~-----~~----~~~~~~~~~~ 178 (219)
.....++.. .|++++++++.++.-..+.++++.+.. .+.++++++|++|...+. .. ....+.+++.
T Consensus 109 ~~~~d~l~~---~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k 185 (296)
T COG3596 109 QLYRDYLPK---LDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK 185 (296)
T ss_pred HHHHHHhhh---ccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence 333444444 899999999999776677666654443 568999999999976542 11 1112233444
Q ss_pred HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
...+...+.+..|+++.+...+.|++++...+.+.+
T Consensus 186 ~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 186 AEALGRLFQEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred HHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 445555666667899999999999999999998754
No 210
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.76 E-value=1.7e-17 Score=126.64 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=90.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcc-----------------------------cccccCCCCeeEEeeEE---EecCeEE
Q 027757 41 EFAILGRSNVGKSSLINALVRKKE-----------------------------LALTSKKPGKTQLINHF---LVNKSWY 88 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~-----------------------------~~~~~~~~~~t~~~~~~---~~~~~~~ 88 (219)
.|+++|..++|||||+++|+...- ........++|.+.... ..+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999974310 00011123445443322 2344799
Q ss_pred EEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-------CCcccHHHHHHhccCC-CcEEEEEEcc
Q 027757 89 IVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-------PQKIDLDCANWLGRNN-IPLTFVFTKC 160 (219)
Q Consensus 89 liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~-~p~iiv~nK~ 160 (219)
++||||+. .+...++.....+|++|+|+|++++ ...+..+........+ .|+++++||+
T Consensus 81 liDtpG~~-------------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~ 147 (219)
T cd01883 81 ILDAPGHR-------------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM 147 (219)
T ss_pred EEECCChH-------------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence 99999952 2233444445558999999999984 2223334344444444 6899999999
Q ss_pred cccccccCCCchHhHHHHHHH----HHhcC--CCCCCeEEeecCCCCChH
Q 027757 161 DKMKVAKGRRPDENIKSFQQL----IRENY--PHHPPWIMTSSVTGLGRD 204 (219)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~Sa~~~~~v~ 204 (219)
|+.... ......++..+. +.... ...++++++||++|.|++
T Consensus 148 Dl~~~~---~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 148 DDVTVN---WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccccc---ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 987321 011223333332 22211 124789999999999986
No 211
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.75 E-value=1.7e-17 Score=114.03 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=113.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC-eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK-SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
+..+.++|-.++|||||+|.+....+....-|+.|- ....+..++ .+.++|.|| |-.|+++++-|++
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGf--nmrk~tkgnvtiklwD~gG----------q~rfrsmWerycR 87 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGF--NMRKVTKGNVTIKLWDLGG----------QPRFRSMWERYCR 87 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhcccccc--eeEEeccCceEEEEEecCC----------CccHHHHHHHHhh
Confidence 568999999999999999988875455444444442 222223333 578899987 5567899999999
Q ss_pred ccCCccEEEEEEeCCCCCCccc--HHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCC
Q 027757 118 NRESLVGVLLLIDASVPPQKID--LDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHP 190 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 190 (219)
+ +++++|++|++++..... .++...+.+ .++|+++++||.|+.+. -.-..+..+++... ...+
T Consensus 88 ~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A-------L~~~~li~rmgL~sitdREv 157 (186)
T KOG0075|consen 88 G---VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA-------LSKIALIERMGLSSITDREV 157 (186)
T ss_pred c---CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc-------ccHHHHHHHhCccccccceE
Confidence 9 999999999998655432 233344443 68999999999998764 12234444443221 2246
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNYWD 218 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~~ 218 (219)
.+|.+|+++..|++-+.+||.++-+..+
T Consensus 158 cC~siScke~~Nid~~~~Wli~hsk~~~ 185 (186)
T KOG0075|consen 158 CCFSISCKEKVNIDITLDWLIEHSKSLR 185 (186)
T ss_pred EEEEEEEcCCccHHHHHHHHHHHhhhhc
Confidence 7899999999999999999998866543
No 212
>PLN00023 GTP-binding protein; Provisional
Probab=99.75 E-value=3.5e-17 Score=129.14 Aligned_cols=118 Identities=22% Similarity=0.324 Sum_probs=88.7
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----------------CeEEEEeCCCCC
Q 027757 33 DCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----------------KSWYIVDLPGYG 96 (219)
Q Consensus 33 ~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~liDtpg~~ 96 (219)
..+....+||+++|..|+|||||+++|++..+.....++.+.+.....+..+ ..+.+|||+|
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG-- 92 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG-- 92 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC--
Confidence 4556677999999999999999999999987766677777766543333321 1367777776
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc---c---------------CCCcEEEEEE
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG---R---------------NNIPLTFVFT 158 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~---~---------------~~~p~iiv~n 158 (219)
++.|..++..|++. +|++|+|+|+++..++... ..|+. . .++|+++|+|
T Consensus 93 --------qErfrsL~~~yyr~---AdgiILVyDITdr~SFenL--~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN 159 (334)
T PLN00023 93 --------HERYKDCRSLFYSQ---INGVIFVHDLSQRRTKTSL--QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN 159 (334)
T ss_pred --------ChhhhhhhHHhccC---CCEEEEEEeCCCHHHHHHH--HHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence 56678888999988 9999999999997766543 23332 1 1479999999
Q ss_pred ccccccc
Q 027757 159 KCDKMKV 165 (219)
Q Consensus 159 K~D~~~~ 165 (219)
|+|+...
T Consensus 160 K~DL~~~ 166 (334)
T PLN00023 160 KADIAPK 166 (334)
T ss_pred Ccccccc
Confidence 9999764
No 213
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=6.6e-17 Score=133.49 Aligned_cols=160 Identities=21% Similarity=0.286 Sum_probs=105.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc------c--------cccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKK------E--------LALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKA 100 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~------~--------~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~ 100 (219)
...+|+++|.+++|||||+++|++.. . ........+.|.+...... +..+.++||||+.
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~---- 86 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA---- 86 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence 35789999999999999999999621 0 0011123455554433222 3478999999962
Q ss_pred CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEE-EEEEcccccccccCCCchHhHH-HH
Q 027757 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLT-FVFTKCDKMKVAKGRRPDENIK-SF 178 (219)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~-~~ 178 (219)
.+..........+|++++|+|+.++...+..+.+..+...++|.+ +++||+|+.+.+. ..+.++ ++
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~---~~~~~~~ei 154 (396)
T PRK12735 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE---LLELVEMEV 154 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHH---HHHHHHHHH
Confidence 344455555666899999999998776666677777777788866 5799999974321 111111 22
Q ss_pred HHHHHhcC--CCCCCeEEeecCCCC----------ChHHHHHHHHHH
Q 027757 179 QQLIRENY--PHHPPWIMTSSVTGL----------GRDELLLHMSQL 213 (219)
Q Consensus 179 ~~~~~~~~--~~~~~~~~~Sa~~~~----------~v~el~~~l~~~ 213 (219)
...+.... +...+++++||.++. ++.+|++.|...
T Consensus 155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~ 201 (396)
T PRK12735 155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY 201 (396)
T ss_pred HHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence 22222211 124789999999984 678888887764
No 214
>CHL00071 tufA elongation factor Tu
Probab=99.75 E-value=6.1e-17 Score=134.24 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=99.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc--------------cccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKE--------------LALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~--------------~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~ 99 (219)
....+|+++|.+++|||||+++|++..- ........+.|.+..... .+..+.++||||+.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~--- 86 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence 3457899999999999999999997410 011112245555533222 23468999999963
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhH-HH
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENI-KS 177 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~-~~ 177 (219)
.+..........+|++++|+|+..+...++.+.+..+...++| +++++||+|+.+.+.. .+.+ ++
T Consensus 87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~---~~~~~~~ 153 (409)
T CHL00071 87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEEL---LELVELE 153 (409)
T ss_pred ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHH---HHHHHHH
Confidence 2333334445558999999999998877878888888888889 7789999999753211 1111 12
Q ss_pred HHHHHHhcC--CCCCCeEEeecCCCCC
Q 027757 178 FQQLIRENY--PHHPPWIMTSSVTGLG 202 (219)
Q Consensus 178 ~~~~~~~~~--~~~~~~~~~Sa~~~~~ 202 (219)
+.+.+.... ....+++++||.+|.+
T Consensus 154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 154 VRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHhCCCCCcceEEEcchhhccc
Confidence 222232211 1237899999999863
No 215
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.75 E-value=1.1e-16 Score=122.17 Aligned_cols=162 Identities=20% Similarity=0.284 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
.||+++|++|+|||||+++|.+..+.....++.+.......... ..++.+|||+| ++.|+.++..|+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g----------q~~~~~~~~~y~ 75 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG----------QEEYRSLRPEYY 75 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCC----------HHHHHHHHHHHh
Confidence 89999999999999999999998655545544443322222222 22467777766 778889999999
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHh---cc---CCCcEEEEEEcccccccccCCCc-------hHhHHHHHHHHH
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWL---GR---NNIPLTFVFTKCDKMKVAKGRRP-------DENIKSFQQLIR 183 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~---~~---~~~p~iiv~nK~D~~~~~~~~~~-------~~~~~~~~~~~~ 183 (219)
++ ++++++++|.....+..+. ...|. .. .+.|+++|+||+|+......... ............
T Consensus 76 ~~---~~~~l~~~d~~~~~~~~~~-~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (219)
T COG1100 76 RG---ANGILIVYDSTLRESSDEL-TEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAV 151 (219)
T ss_pred cC---CCEEEEEEecccchhhhHH-HHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHh
Confidence 99 8999999999974443321 12222 22 36899999999999876321100 000111111111
Q ss_pred hcCCCCCCeEEeecC--CCCChHHHHHHHHHHHh
Q 027757 184 ENYPHHPPWIMTSSV--TGLGRDELLLHMSQLRN 215 (219)
Q Consensus 184 ~~~~~~~~~~~~Sa~--~~~~v~el~~~l~~~~~ 215 (219)
........++++|++ .+.++++++..+.+.+.
T Consensus 152 ~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 152 LPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred hhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 110111348999999 99999999998887664
No 216
>PRK00049 elongation factor Tu; Reviewed
Probab=99.75 E-value=9.3e-17 Score=132.57 Aligned_cols=160 Identities=19% Similarity=0.284 Sum_probs=106.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccc--------------ccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKEL--------------ALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKA 100 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~ 100 (219)
...+|+++|..++|||||+++|++.... .......+.|.+...... +..+.++||||+.
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~---- 86 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA---- 86 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence 3578999999999999999999973100 011124455555433332 3478999999962
Q ss_pred CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEE-EEEEcccccccccCCCchHhHH-HH
Q 027757 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLT-FVFTKCDKMKVAKGRRPDENIK-SF 178 (219)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~-~~ 178 (219)
.+..........+|++++|+|+.++...++.+.+.++...++|.+ +++||+|+.+.+.. .+.+. ++
T Consensus 87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~---~~~~~~~i 154 (396)
T PRK00049 87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEEL---LELVEMEV 154 (396)
T ss_pred ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHH---HHHHHHHH
Confidence 233444455566999999999998877777788888888889976 58999999743110 11111 22
Q ss_pred HHHHHhc-C-CCCCCeEEeecCCCC----------ChHHHHHHHHHH
Q 027757 179 QQLIREN-Y-PHHPPWIMTSSVTGL----------GRDELLLHMSQL 213 (219)
Q Consensus 179 ~~~~~~~-~-~~~~~~~~~Sa~~~~----------~v~el~~~l~~~ 213 (219)
...+... + ....+++++||.++. ++.++++.|...
T Consensus 155 ~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred HHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 2222221 1 234789999999875 467777777654
No 217
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.74 E-value=1.1e-16 Score=123.33 Aligned_cols=111 Identities=21% Similarity=0.228 Sum_probs=77.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccc----ccc------------cCCCCeeEE---eeEEEecCeEEEEeCCCCCCCCCC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKEL----ALT------------SKKPGKTQL---INHFLVNKSWYIVDLPGYGFAKAP 101 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~----~~~------------~~~~~~t~~---~~~~~~~~~~~liDtpg~~~~~~~ 101 (219)
+|+++|..|+|||||+++|+...-. ... ....+.+.. ....+.+.++.++||||+..
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~---- 76 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD---- 76 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc----
Confidence 4899999999999999999874210 000 011112221 12223345899999999742
Q ss_pred cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
|......+++. +|++++|+|+.++........++++...++|+++++||+|+..
T Consensus 77 ------f~~~~~~~l~~---aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~ 130 (237)
T cd04168 77 ------FIAEVERSLSV---LDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG 130 (237)
T ss_pred ------hHHHHHHHHHH---hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence 23334555666 8999999999998776666677777778999999999999874
No 218
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.74 E-value=7.2e-17 Score=133.32 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=97.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc--------------cccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKE--------------LALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAK 99 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~ 99 (219)
....+|+++|..++|||||+++|++... ........+.|.+...... +..+.++||||+.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~--- 86 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA--- 86 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH---
Confidence 3467899999999999999999985310 0011122455554433333 3368999999963
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEE-EEEEcccccccccCCCchHhH-HH
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLT-FVFTKCDKMKVAKGRRPDENI-KS 177 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~-~~ 177 (219)
.+...++.....+|++++|+|+.++...+..+.+.++...++|.+ +++||+|+.+.+.. .+.+ ++
T Consensus 87 ----------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~---~~~~~~~ 153 (394)
T TIGR00485 87 ----------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEEL---LELVEME 153 (394)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHH---HHHHHHH
Confidence 234455566566899999999998777777777888877788866 68999998753211 1111 12
Q ss_pred HHHHHHhcCC--CCCCeEEeecCCCC
Q 027757 178 FQQLIRENYP--HHPPWIMTSSVTGL 201 (219)
Q Consensus 178 ~~~~~~~~~~--~~~~~~~~Sa~~~~ 201 (219)
+...+..... ..++++++||.++.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 154 VRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHhcCCCccCccEEECcccccc
Confidence 2222322211 23789999999874
No 219
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.74 E-value=1.4e-17 Score=126.05 Aligned_cols=126 Identities=17% Similarity=0.255 Sum_probs=92.6
Q ss_pred eEEEEeCCC-CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc-----HHHHHHhccCCCcEEEEEEc
Q 027757 86 SWYIVDLPG-YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-----LDCANWLGRNNIPLTFVFTK 159 (219)
Q Consensus 86 ~~~liDtpg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-----~~~~~~~~~~~~p~iiv~nK 159 (219)
+++++|||| +.-..|+..|-..-+.+.-.+ .-+++||+|..+-.+... +..+..+.+.++|+++|+||
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~lass~------ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK 190 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETLASSF------PTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNK 190 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhHhhcC------CeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEec
Confidence 579999999 666788888865433332221 346899999886444333 24556677899999999999
Q ss_pred ccccccccCCCchHhHHHHHHHHHh------------------cCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 160 CDKMKVAKGRRPDENIKSFQQLIRE------------------NYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 160 ~D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+|+.+.+.......+++.+.+.+.. .+....+.+-+|+.+|.|.++++..+.+.+..+
T Consensus 191 ~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 191 TDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 9999987777777777777766653 112247889999999999999999998876654
No 220
>PRK09866 hypothetical protein; Provisional
Probab=99.74 E-value=2.8e-16 Score=132.51 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=80.9
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC--CcEEEEEEcccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN--IPLTFVFTKCDK 162 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D~ 162 (219)
.+++++||||+....... ........+.. +|+|+||+|+.+..+..+..+.+.+...+ .|+++|+||+|+
T Consensus 230 ~QIIFVDTPGIhk~~~~~-----L~k~M~eqL~e---ADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl 301 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPH-----LQKMLNQQLAR---ASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ 301 (741)
T ss_pred CCEEEEECCCCCCccchH-----HHHHHHHHHhh---CCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence 468999999986432211 11122223444 89999999999877777777888887766 499999999998
Q ss_pred cccccCCCchHhHHHHHHHH-HhcCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757 163 MKVAKGRRPDENIKSFQQLI-RENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
.+... ...+.+.++.... .........+|++||+.|.|++++++.|.+
T Consensus 302 ~dree--ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 302 QDRNS--DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCccc--chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 64321 1123444444322 222223457999999999999999999876
No 221
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=5.3e-17 Score=131.87 Aligned_cols=169 Identities=22% Similarity=0.196 Sum_probs=115.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+|+|+||+|||||+|+|... ....+++.+|+|++.-... .+.++.++||.|+....- ...+-..+....
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~---~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESN---DGIEALGIERAR 343 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccC---ChhHHHhHHHHH
Confidence 489999999999999999999997 7999999999999864333 344899999999875221 122222333333
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
. ..+.+|++++|+|+...++..+..+.+.+.. .+.|++++.||.|+...- .+.... -.....
T Consensus 344 k-~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~-~~~~~~----~~~~~~ 417 (531)
T KOG1191|consen 344 K-RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI-PEMTKI----PVVYPS 417 (531)
T ss_pred H-HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcc-ccccCC----ceeccc
Confidence 2 2344899999999977667777665555542 347899999999987541 000000 000111
Q ss_pred hcCC-CCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 184 ENYP-HHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 184 ~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
..+. ......++|++++.|++.|...+.+.+..+
T Consensus 418 ~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 418 AEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 1111 123456799999999999999998766543
No 222
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.73 E-value=9.4e-17 Score=132.95 Aligned_cols=148 Identities=17% Similarity=0.160 Sum_probs=93.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccc-cc------------c------------------cCCCCeeEEeeEE---EecC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKEL-AL------------T------------------SKKPGKTQLINHF---LVNK 85 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~-~~------------~------------------~~~~~~t~~~~~~---~~~~ 85 (219)
++|+++|..++|||||+++|+...-. .. . ....+.|.+.... +.+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 48999999999999999999854200 00 0 0111233332222 2244
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-cEEEEEEcccccc
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-PLTFVFTKCDKMK 164 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~ 164 (219)
++.++||||+. .+..........+|++|+|+|+..+...++.+.+..+...+. ++++++||+|+.+
T Consensus 81 ~~~liDtPGh~-------------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHE-------------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 79999999952 222223334445899999999998877777666665555444 5888999999875
Q ss_pred cccCCCchHhHHHHHHHH----HhcCCCCCCeEEeecCCCCChHH
Q 027757 165 VAKGRRPDENIKSFQQLI----RENYPHHPPWIMTSSVTGLGRDE 205 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~~v~e 205 (219)
.. .+.+++..+.+ ........+++++||++|.|+++
T Consensus 148 ~~-----~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 148 YD-----EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ch-----HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 32 12222222222 22122346899999999999885
No 223
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.73 E-value=1.2e-18 Score=117.89 Aligned_cols=153 Identities=20% Similarity=0.253 Sum_probs=112.0
Q ss_pred EEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCC--CCCCCCCcchhhhHHHHHHHHhhccCC
Q 027757 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG--YGFAKAPDVTRMDWSSFTKGYFLNRES 121 (219)
Q Consensus 44 i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (219)
++|.+++|||+|+-++-..-+.+. .. +..+-++.+-.++|..+ ...+.|++.||++|++....||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~---~f-----istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrd--- 70 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAG---NF-----ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRD--- 70 (192)
T ss_pred ccccCccCceEEEEEeccCceecC---ce-----eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcc---
Confidence 689999999998876665433321 11 11112222222344333 344667777899999999999999
Q ss_pred ccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 122 LVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 122 ~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
+|+.++++|+.+..++.+. ..|+.+ ..+.+.+++||||+..+ +.+..++-+.+.+.++ +|+.++
T Consensus 71 a~allllydiankasfdn~--~~wlsei~ey~k~~v~l~llgnk~d~a~e--r~v~~ddg~kla~~y~------ipfmet 140 (192)
T KOG0083|consen 71 ADALLLLYDIANKASFDNC--QAWLSEIHEYAKEAVALMLLGNKCDLAHE--RAVKRDDGEKLAEAYG------IPFMET 140 (192)
T ss_pred cceeeeeeecccchhHHHH--HHHHHHHHHHHHhhHhHhhhccccccchh--hccccchHHHHHHHHC------CCceec
Confidence 9999999999998887653 345443 56889999999999764 5566677777777766 799999
Q ss_pred ecCCCCChHHHHHHHHHHHhhh
Q 027757 196 SSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
||++|.|++-.|..|.+.+++.
T Consensus 141 saktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 141 SAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred cccccccHhHHHHHHHHHHHHh
Confidence 9999999999999998877654
No 224
>PRK10218 GTP-binding protein; Provisional
Probab=99.73 E-value=1.5e-16 Score=136.48 Aligned_cols=159 Identities=19% Similarity=0.189 Sum_probs=107.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc--cccc------------ccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKK--ELAL------------TSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKA 100 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~--~~~~------------~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~ 100 (219)
...+|+|+|..++|||||+++|+... +... .....+.+...... +.+.++.+|||||+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d--- 80 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD--- 80 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch---
Confidence 45789999999999999999999731 1111 11233444433222 2244799999999642
Q ss_pred CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHH
Q 027757 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180 (219)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~ 180 (219)
|...+..+++. +|++|+|+|+.++...+....+.++...++|.++++||+|+.... ....++++.+
T Consensus 81 -------f~~~v~~~l~~---aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~----~~~vl~ei~~ 146 (607)
T PRK10218 81 -------FGGEVERVMSM---VDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGAR----PDWVVDQVFD 146 (607)
T ss_pred -------hHHHHHHHHHh---CCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCc----hhHHHHHHHH
Confidence 23344556666 899999999998776666667777777899999999999986532 2233344444
Q ss_pred HHHhc----CCCCCCeEEeecCCCC----------ChHHHHHHHHHH
Q 027757 181 LIREN----YPHHPPWIMTSSVTGL----------GRDELLLHMSQL 213 (219)
Q Consensus 181 ~~~~~----~~~~~~~~~~Sa~~~~----------~v~el~~~l~~~ 213 (219)
.+... ....+|++++||++|. |+..|++.+.+.
T Consensus 147 l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~ 193 (607)
T PRK10218 147 LFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH 193 (607)
T ss_pred HHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence 33221 1124789999999998 578888877664
No 225
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.73 E-value=3.2e-18 Score=121.45 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=116.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
+..+|++|+|..++||||++++++...|-..+..+.+++.-..... ++........|+++|++++..+.+.||
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~-------v~~Edvr~mlWdtagqeEfDaItkAyy 90 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIK-------VLIEDVRSMLWDTAGQEEFDAITKAYY 90 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHH-------hhHHHHHHHHHHhccchhHHHHHHHHh
Confidence 4578999999999999999999998755444444444332211111 111112235677778999999999999
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
++ +.++++||..++..++. ....|..+ .++|.++|-||+|+.++. .....+.+.+.+.+. ++
T Consensus 91 rg---aqa~vLVFSTTDr~SFe--a~~~w~~kv~~e~~~IPtV~vqNKIDlveds--~~~~~evE~lak~l~------~R 157 (246)
T KOG4252|consen 91 RG---AQASVLVFSTTDRYSFE--ATLEWYNKVQKETERIPTVFVQNKIDLVEDS--QMDKGEVEGLAKKLH------KR 157 (246)
T ss_pred cc---ccceEEEEecccHHHHH--HHHHHHHHHHHHhccCCeEEeeccchhhHhh--hcchHHHHHHHHHhh------hh
Confidence 99 78899999999877653 44555543 789999999999998763 344556666666665 58
Q ss_pred eEEeecCCCCChHHHHHHHHHHHh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+.+|++...|+.++|.+|.+...
T Consensus 158 lyRtSvked~NV~~vF~YLaeK~~ 181 (246)
T KOG4252|consen 158 LYRTSVKEDFNVMHVFAYLAEKLT 181 (246)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHH
Confidence 899999999999999999987543
No 226
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.73 E-value=5.8e-16 Score=110.86 Aligned_cols=156 Identities=19% Similarity=0.258 Sum_probs=114.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccccc-----ccCCCC---eeEEe--eEEEec--CeEEEEeCCCCCCCCCCcch
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELAL-----TSKKPG---KTQLI--NHFLVN--KSWYIVDLPGYGFAKAPDVT 104 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~-----~~~~~~---~t~~~--~~~~~~--~~~~liDtpg~~~~~~~~~~ 104 (219)
....||+|.|+.++||||++.++....-... .....+ +|... .....+ ..+.+++|||
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG---------- 77 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG---------- 77 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC----------
Confidence 4467999999999999999999998742111 111112 33332 222222 3789999998
Q ss_pred hhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 105 RMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
|.+|+.+++.+.++ +++.|+++|.+++.....++++..+...+ +|+++.+||.|+.+... .+.+.++...
T Consensus 78 q~RF~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~p----pe~i~e~l~~-- 148 (187)
T COG2229 78 QERFKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALP----PEKIREALKL-- 148 (187)
T ss_pred cHHHHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCC----HHHHHHHHHh--
Confidence 56778999999988 89999999999988876677777777766 99999999999987532 2333333332
Q ss_pred hcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.. ...+++..+|..+++..+.++.+...
T Consensus 149 -~~-~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 149 -EL-LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred -cc-CCCceeeeecccchhHHHHHHHHHhh
Confidence 11 34799999999999999998887654
No 227
>PLN03127 Elongation factor Tu; Provisional
Probab=99.72 E-value=2.1e-16 Score=131.82 Aligned_cols=162 Identities=19% Similarity=0.247 Sum_probs=104.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-----c---------cccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK-----E---------LALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAK 99 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----~---------~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~ 99 (219)
...++|+++|..++|||||+++|.+.. . ........+.|.+...... +.++.++||||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence 446789999999999999999997421 0 0011223455655433333 33789999999741
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHH-H
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIK-S 177 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~-~ 177 (219)
+..........+|++++|+|+.++...++.+.+.++...++| +++++||+|+.+.+. ..+.++ +
T Consensus 137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~---~~~~i~~~ 202 (447)
T PLN03127 137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEE---LLELVEME 202 (447)
T ss_pred -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHH---HHHHHHHH
Confidence 222222233348999999999988777888888888888999 578899999975321 111122 2
Q ss_pred HHHHHHh-cC-CCCCCeEEeecC---CCCC-------hHHHHHHHHHHH
Q 027757 178 FQQLIRE-NY-PHHPPWIMTSSV---TGLG-------RDELLLHMSQLR 214 (219)
Q Consensus 178 ~~~~~~~-~~-~~~~~~~~~Sa~---~~~~-------v~el~~~l~~~~ 214 (219)
+.+.+.. .+ ...++++++|+. ++.| +.+|+++|.+.+
T Consensus 203 i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 203 LRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 2222221 11 234788888876 4444 678888877653
No 228
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.72 E-value=1.4e-16 Score=136.74 Aligned_cols=158 Identities=24% Similarity=0.241 Sum_probs=105.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc--cccc------------ccCCCCeeEEe---eEEEecCeEEEEeCCCCCCCCCCc
Q 027757 40 PEFAILGRSNVGKSSLINALVRKK--ELAL------------TSKKPGKTQLI---NHFLVNKSWYIVDLPGYGFAKAPD 102 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~--~~~~------------~~~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~~~~ 102 (219)
.+|+|+|..++|||||+++|+... +... .....+.|... ...+.+.++.+|||||+.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~------ 75 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA------ 75 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH------
Confidence 479999999999999999998631 1110 01122333322 223345589999999963
Q ss_pred chhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHH
Q 027757 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI 182 (219)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 182 (219)
.|......+++. +|++++|+|+.++...+....+.++...++|+++|+||+|+.... ..+..++..+.+
T Consensus 76 ----DF~~ev~~~l~~---aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~----~~~v~~ei~~l~ 144 (594)
T TIGR01394 76 ----DFGGEVERVLGM---VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR----PDEVVDEVFDLF 144 (594)
T ss_pred ----HHHHHHHHHHHh---CCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC----HHHHHHHHHHHH
Confidence 223334455555 899999999998776666777777778899999999999986431 112223333333
Q ss_pred HhcC----CCCCCeEEeecCCCC----------ChHHHHHHHHHHH
Q 027757 183 RENY----PHHPPWIMTSSVTGL----------GRDELLLHMSQLR 214 (219)
Q Consensus 183 ~~~~----~~~~~~~~~Sa~~~~----------~v~el~~~l~~~~ 214 (219)
.... ...+|++++||++|. |+..+++.+.+.+
T Consensus 145 ~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 145 AELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred HhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 2111 123689999999996 7999998887654
No 229
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.72 E-value=1.2e-16 Score=133.39 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=92.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc--ccc---------------------------cccCCCCeeEEeeEEEe---c
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK--ELA---------------------------LTSKKPGKTQLINHFLV---N 84 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~--~~~---------------------------~~~~~~~~t~~~~~~~~---~ 84 (219)
....+|+++|..++|||||+++|+... ... ......+.|.+...... +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 346789999999999999999998521 100 00112344444433222 3
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc---ccHHHHHHhccCC-CcEEEEEEcc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK---IDLDCANWLGRNN-IPLTFVFTKC 160 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~~~~-~p~iiv~nK~ 160 (219)
..+.+|||||+. .+...++.....+|++|+|+|++++.+. +...........+ .|+++++||+
T Consensus 85 ~~i~iiDtpGh~-------------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~ 151 (426)
T TIGR00483 85 YEVTIVDCPGHR-------------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM 151 (426)
T ss_pred eEEEEEECCCHH-------------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence 478999999952 2333444444558999999999987332 2222223333333 5789999999
Q ss_pred cccccccCCCchHhHHHHHHHHHhcC-C-CCCCeEEeecCCCCChHH
Q 027757 161 DKMKVAKGRRPDENIKSFQQLIRENY-P-HHPPWIMTSSVTGLGRDE 205 (219)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~~v~e 205 (219)
|+.+... +......+++.+.+.... . ...+++++||++|.|+.+
T Consensus 152 Dl~~~~~-~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 152 DSVNYDE-EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hccCccH-HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 9964211 001111122222222211 1 246899999999999986
No 230
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.71 E-value=2.9e-16 Score=123.48 Aligned_cols=128 Identities=16% Similarity=0.233 Sum_probs=79.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccC-------CCCee-EEe--eEEEec---CeEEEEeCCCCCCCCCCcc
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSK-------KPGKT-QLI--NHFLVN---KSWYIVDLPGYGFAKAPDV 103 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~-------~~~~t-~~~--~~~~~~---~~~~liDtpg~~~~~~~~~ 103 (219)
+..++|+++|.+|+|||||+|+|++......... ...+. ... .....+ .++.++||||++.......
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 4568999999999999999999999853332111 11111 111 111222 2689999999875432211
Q ss_pred h--------hhhHHHHHHHHh---h----ccCCccEEEEEEeCCC-CCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 104 T--------RMDWSSFTKGYF---L----NRESLVGVLLLIDASV-PPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 104 ~--------~~~~~~~~~~~~---~----~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
. ...|........ + ....+|+++|+++++. .....+...++++.. ++|+++|+||+|+...
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~ 158 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTP 158 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence 0 001111111111 1 1113789999999885 555666778888876 7999999999999764
No 231
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.71 E-value=2.4e-16 Score=131.32 Aligned_cols=161 Identities=18% Similarity=0.210 Sum_probs=102.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccccc--ccCCCCeeEEeeE----------------------------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELAL--TSKKPGKTQLINH---------------------------------- 80 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~--~~~~~~~t~~~~~---------------------------------- 80 (219)
....+|+++|...+|||||+.+|++.. ... .....+.|.+..+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~-~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVK-TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCC-cccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 446789999999999999999999852 110 0111111110000
Q ss_pred --EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-CCcccHHHHHHhccCCC-cEEEE
Q 027757 81 --FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGRNNI-PLTFV 156 (219)
Q Consensus 81 --~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~-p~iiv 156 (219)
......+.++||||+ +.+....+.+...+|++++|+|+.++ ...+..+.+..+...++ |+++|
T Consensus 111 ~~~~~~~~i~~IDtPGH-------------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVv 177 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIIL 177 (460)
T ss_pred ccccccceEeeeeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEE
Confidence 011236899999995 23445555555668999999999985 34444555555444444 58899
Q ss_pred EEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 157 FTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 157 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+||+|+.+.+.. .+..+++.+.+........+++++||++|.|+++|+++|.+.+
T Consensus 178 lNKiDlv~~~~~---~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 178 QNKIDLVKEAQA---QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred EecccccCHHHH---HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 999999753211 1222222222322233457999999999999999999998643
No 232
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=4e-17 Score=115.31 Aligned_cols=161 Identities=20% Similarity=0.189 Sum_probs=109.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccc--------cCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhh
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALT--------SKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRM 106 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~--------~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~ 106 (219)
+...+-|+|+|..+||||||+.++-.. +...+ .++.+. .+.+... +..+.+||.. ||+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~-~~~~~~~l~~~ki~~tvgL--nig~i~v~~~~l~fwdlg----------GQe 80 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTD-FSKAYGGLNPSKITPTVGL--NIGTIEVCNAPLSFWDLG----------GQE 80 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHH-HHhhhcCCCHHHeecccce--eecceeeccceeEEEEcC----------ChH
Confidence 344678999999999999999988765 33222 122221 1222222 2345566654 577
Q ss_pred hHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHH
Q 027757 107 DWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL 181 (219)
Q Consensus 107 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~ 181 (219)
..+++++.||.. ++++|+++|+++++..+.. ++...-...+.|+++..||-|+.+..+ ..+++.....
T Consensus 81 ~lrSlw~~yY~~---~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~----~~El~~~~~~ 153 (197)
T KOG0076|consen 81 SLRSLWKKYYWL---AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME----AAELDGVFGL 153 (197)
T ss_pred HHHHHHHHHHHH---hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh----HHHHHHHhhh
Confidence 789999999999 9999999999986655442 112222237899999999999877522 1333333333
Q ss_pred HHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 182 IRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 182 ~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.........++.++||.+|.|++|-.+|+.+.+.+
T Consensus 154 ~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~k 188 (197)
T KOG0076|consen 154 AELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK 188 (197)
T ss_pred hhhcCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence 22223346889999999999999999999887654
No 233
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.70 E-value=1.7e-16 Score=138.31 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=95.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccc----------cCCC----------------------CeeEEeeE---E
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALT----------SKKP----------------------GKTQLINH---F 81 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~----------~~~~----------------------~~t~~~~~---~ 81 (219)
...++|+++|.+++|||||+++|+... .... +... +.|.+... .
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~-~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDS-KMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 445789999999999999999999752 1111 0011 22222211 1
Q ss_pred EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEcc
Q 027757 82 LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKC 160 (219)
Q Consensus 82 ~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~ 160 (219)
..+.++.++||||+. .+..........+|++++|+|+..+...++.+....+...+ .|+++++||+
T Consensus 101 ~~~~~~~liDtPG~~-------------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~ 167 (632)
T PRK05506 101 TPKRKFIVADTPGHE-------------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKM 167 (632)
T ss_pred cCCceEEEEECCChH-------------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEec
Confidence 224478999999952 22223333445589999999999887766666566555544 5688999999
Q ss_pred cccccccCCCchHhHHHHHHHHH----hcCCCCCCeEEeecCCCCChHH
Q 027757 161 DKMKVAKGRRPDENIKSFQQLIR----ENYPHHPPWIMTSSVTGLGRDE 205 (219)
Q Consensus 161 D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~e 205 (219)
|+.+.. .+.+++....+. .......+++++||++|.|+++
T Consensus 168 D~~~~~-----~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 168 DLVDYD-----QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccccch-----hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 987421 122333322222 2222346799999999999874
No 234
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.70 E-value=2.2e-17 Score=121.06 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=112.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-C---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-K---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..|++|+|..++|||+|+-.+....|...+.|+........ ..++ + .+.+|||.| |++|..++..
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAG----------qedYDrlRpl 72 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAG----------QEDYDRLRPL 72 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCC----------Cccccccccc
Confidence 57999999999999999999998877777777665333322 2221 2 355666655 6666665555
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEccccccccc----------CCCchHhHHHHH
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQ 179 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~ 179 (219)
.|.. +|.++++|++.++.+..+.. -+|+.+ .+.|+++|++|.|+.+... ..+..++..++.
T Consensus 73 sY~~---tdvfl~cfsv~~p~S~~nv~-~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA 148 (198)
T KOG0393|consen 73 SYPQ---TDVFLLCFSVVSPESFENVK-SKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELA 148 (198)
T ss_pred CCCC---CCEEEEEEEcCChhhHHHHH-hhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHH
Confidence 5555 89999999999998887532 345554 6899999999999985321 133444455555
Q ss_pred HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++++. ..|+++||+++.|++++|+...+.+
T Consensus 149 ~~iga-----~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 149 KEIGA-----VKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred HHhCc-----ceeeeehhhhhCCcHHHHHHHHHHH
Confidence 55554 6899999999999999999887765
No 235
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=8.3e-16 Score=128.92 Aligned_cols=149 Identities=19% Similarity=0.284 Sum_probs=98.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc------cc--------ccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK------EL--------ALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~------~~--------~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~ 99 (219)
...++|+++|.+++|||||+++|++.. .. .......+.|.+.... ..+..+.++||||+.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~--- 155 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA--- 155 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH---
Confidence 446789999999999999999999631 00 0112233444433222 234579999999963
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHH-H
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIK-S 177 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~-~ 177 (219)
.+....+.....+|++++|+|+.++...+..+.+..+...++| +++++||+|+.+.+.. .+.+. +
T Consensus 156 ----------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~---~~~i~~~ 222 (478)
T PLN03126 156 ----------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEEL---LELVELE 222 (478)
T ss_pred ----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHH---HHHHHHH
Confidence 2334444555558999999999998877777888888888888 7789999999753211 11122 2
Q ss_pred HHHHHHhc-CC-CCCCeEEeecCCCC
Q 027757 178 FQQLIREN-YP-HHPPWIMTSSVTGL 201 (219)
Q Consensus 178 ~~~~~~~~-~~-~~~~~~~~Sa~~~~ 201 (219)
+...+... +. ...+++++|+.++.
T Consensus 223 i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 223 VRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHHhcCCCcCcceEEEEEccccc
Confidence 22223221 12 35789999998874
No 236
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.70 E-value=2.7e-16 Score=132.28 Aligned_cols=152 Identities=17% Similarity=0.149 Sum_probs=95.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-ccc------------cc------------------CCCCeeEEeeEE---E
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKE-LAL------------TS------------------KKPGKTQLINHF---L 82 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-~~~------------~~------------------~~~~~t~~~~~~---~ 82 (219)
...++|+++|..++|||||+++|+...- ... .. ...+.|.+.... .
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 4568999999999999999999986521 000 00 011233332221 2
Q ss_pred ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEccc
Q 027757 83 VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKCD 161 (219)
Q Consensus 83 ~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D 161 (219)
.+.++.++||||+. .+..........+|++++|+|+..+...++.+....+...+ .|+++++||+|
T Consensus 105 ~~~~i~~iDTPGh~-------------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD 171 (474)
T PRK05124 105 EKRKFIIADTPGHE-------------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMD 171 (474)
T ss_pred CCcEEEEEECCCcH-------------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeec
Confidence 24479999999952 12222233345589999999999877665554444444433 47899999999
Q ss_pred ccccccCCCchHhHHHHHHHHHh---cC--CCCCCeEEeecCCCCChHHH
Q 027757 162 KMKVAKGRRPDENIKSFQQLIRE---NY--PHHPPWIMTSSVTGLGRDEL 206 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~Sa~~~~~v~el 206 (219)
+.... .+.+++..+.+.. .+ ....+++++||++|.|++++
T Consensus 172 ~~~~~-----~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 172 LVDYS-----EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred cccch-----hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 87431 1223333333321 11 23478999999999998764
No 237
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=2.1e-16 Score=113.20 Aligned_cols=161 Identities=18% Similarity=0.168 Sum_probs=115.7
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
......+|+++|--+|||||++.+|-... .-.+.|+.|.......+. +..+.+||..| |..++.+++.
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E-~vttvPTiGfnVE~v~yk-n~~f~vWDvGG----------q~k~R~lW~~ 80 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTVPTIGFNVETVEYK-NISFTVWDVGG----------QEKLRPLWKH 80 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCC-cccCCCccccceeEEEEc-ceEEEEEecCC----------Ccccccchhh
Confidence 34557899999999999999999998873 444466666444333222 55788888876 4556778999
Q ss_pred HhhccCCccEEEEEEeCCCCCCccc--HHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh--cCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKID--LDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE--NYP 187 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~ 187 (219)
|+.+ .+++|||+|.++.+...+ .++.+.+.. ...|+++..||.|+...- ...++.+.+.. ...
T Consensus 81 Y~~~---t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al-------s~~ei~~~L~l~~l~~ 150 (181)
T KOG0070|consen 81 YFQN---TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL-------SAAEITNKLGLHSLRS 150 (181)
T ss_pred hccC---CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC-------CHHHHHhHhhhhccCC
Confidence 9999 899999999998655443 234444443 478999999999987652 23333333332 222
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
....+-.++|.+|+|+.|-++|+.+.++..
T Consensus 151 ~~w~iq~~~a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 151 RNWHIQSTCAISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred CCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence 345678899999999999999999887764
No 238
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.69 E-value=6e-16 Score=117.70 Aligned_cols=110 Identities=20% Similarity=0.244 Sum_probs=72.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccccc-----------cc------CCCCeeEEeeEE---E-----ecCeEEEEeCCCC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELAL-----------TS------KKPGKTQLINHF---L-----VNKSWYIVDLPGY 95 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~-----------~~------~~~~~t~~~~~~---~-----~~~~~~liDtpg~ 95 (219)
+|+++|..|+|||||+++|+....... .. ...+.+...... . ....+.++||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999997531110 00 111222111111 1 1236899999996
Q ss_pred CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 163 (219)
.. |......++.. +|++|+|+|+.++.+.......+.+...+.|+++|+||+|+.
T Consensus 82 ~~----------f~~~~~~~~~~---aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VN----------FMDEVAAALRL---SDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cc----------hHHHHHHHHHh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 42 22333444555 899999999998776655454555555679999999999986
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.68 E-value=6.8e-16 Score=120.95 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=78.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcc----cccc------------cCCCCeeEEe---eEEEecCeEEEEeCCCCCCCCCC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKE----LALT------------SKKPGKTQLI---NHFLVNKSWYIVDLPGYGFAKAP 101 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~----~~~~------------~~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~~~ 101 (219)
.|+++|.+|+|||||+++|+...- ...+ ....+.+... ...+.+.++.++||||+..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d---- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD---- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence 489999999999999999974210 0001 1122334332 2223355899999999642
Q ss_pred cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
+......+++. +|++|+|+|+.++....+...++.+...++|+++++||+|+..
T Consensus 77 ------f~~~~~~~l~~---aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 77 ------FTIEVERSLRV---LDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG 130 (270)
T ss_pred ------HHHHHHHHHHH---cCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 12233445555 8999999999998777777788888888999999999999874
No 240
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.68 E-value=2e-16 Score=109.22 Aligned_cols=108 Identities=28% Similarity=0.370 Sum_probs=68.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccc--ccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 41 EFAILGRSNVGKSSLINALVRKKEL--ALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~--~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
||+|+|++|+|||||+++|++..+. .......+.+.......... .+.++|++|.. .+......+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~~ 70 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQE----------EFYSQHQFF 70 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSH----------CHHCTSHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccc----------eecccccch
Confidence 7999999999999999999997544 12223333333322222222 37788998852 122222233
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH-HHHHHhcc-----CCCcEEEEEEccc
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL-DCANWLGR-----NNIPLTFVFTKCD 161 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-----~~~p~iiv~nK~D 161 (219)
+.. +|++++|+|++++.+.... .+..|+.. .++|+++|+||.|
T Consensus 71 ~~~---~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 71 LKK---ADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHH---SCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred hhc---CcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 444 8999999999987766553 33344443 4699999999998
No 241
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.68 E-value=1.9e-15 Score=126.25 Aligned_cols=152 Identities=17% Similarity=0.203 Sum_probs=98.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc-c----------------------------ccccCCCCeeEEeeEEE---ecC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKE-L----------------------------ALTSKKPGKTQLINHFL---VNK 85 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~-~----------------------------~~~~~~~~~t~~~~~~~---~~~ 85 (219)
...+|+++|..++|||||+.+|+...- . .......+.|.+..... .+.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 357899999999999999999986210 0 00112224444433322 234
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------CcccHHHHHHhccCCCc-EEEEE
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKIDLDCANWLGRNNIP-LTFVF 157 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv~ 157 (219)
.+.++||||+. .+..........+|++|+|+|+..+. ..+..+.+..+...++| +++++
T Consensus 86 ~i~lIDtPGh~-------------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v 152 (446)
T PTZ00141 86 YFTIIDAPGHR-------------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCI 152 (446)
T ss_pred EEEEEECCChH-------------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence 78999999952 33444455555699999999999875 24556777777778887 67899
Q ss_pred EcccccccccCCCchHhHHHHHHHHHhcC-----C-CCCCeEEeecCCCCChHH
Q 027757 158 TKCDKMKVAKGRRPDENIKSFQQLIRENY-----P-HHPPWIMTSSVTGLGRDE 205 (219)
Q Consensus 158 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~Sa~~~~~v~e 205 (219)
||+|....+ ..++.+++..+++...+ . ..++++++|+.+|.|+.+
T Consensus 153 NKmD~~~~~---~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 153 NKMDDKTVN---YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred Eccccccch---hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 999953210 11233444444333321 1 247899999999999864
No 242
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.67 E-value=8.6e-16 Score=120.81 Aligned_cols=111 Identities=18% Similarity=0.262 Sum_probs=74.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccc----ccc-CC-----------CCeeE--EeeEE-EecCeEEEEeCCCCCCCCCC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELA----LTS-KK-----------PGKTQ--LINHF-LVNKSWYIVDLPGYGFAKAP 101 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~----~~~-~~-----------~~~t~--~~~~~-~~~~~~~liDtpg~~~~~~~ 101 (219)
+|+++|.+|+|||||+++|++..... ... .. .+.+. ....+ +.+..+.++||||..
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~----- 75 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYA----- 75 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHH-----
Confidence 48999999999999999998642110 000 00 01111 11112 234478999999963
Q ss_pred cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
.|......+++. +|++++|+|++.+........++++...++|.++++||+|+..
T Consensus 76 -----~f~~~~~~~l~~---aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~ 130 (268)
T cd04170 76 -----DFVGETRAALRA---ADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRER 130 (268)
T ss_pred -----HHHHHHHHHHHH---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCC
Confidence 122233444555 8999999999988776666677777788999999999999875
No 243
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.66 E-value=2.1e-16 Score=128.52 Aligned_cols=168 Identities=20% Similarity=0.146 Sum_probs=121.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cC-eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NK-SWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
......++|+|.+++|||||+|.++.. ...+.++..||........ ++ .+..+||||+........+.+++.+++
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtra--dvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRA--DDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccccc--ccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 456679999999999999999999986 4678888888886533333 22 688999999988877777777777776
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc---c--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG---R--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~---~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
...-.. .+|+|++|.+......-.+..+.++ . .+.|+|+|+||+|+...+.. .+.-+++.+.+....+
T Consensus 243 ALAHLr----aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL---~~~~~~ll~~~~~~~~ 315 (620)
T KOG1490|consen 243 ALAHLR----SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDL---DQKNQELLQTIIDDGN 315 (620)
T ss_pred HHHHhh----hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcccc---CHHHHHHHHHHHhccC
Confidence 653322 3599999999855444333233333 2 68999999999999875433 2334445555544333
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++++.+|+.+.+|+.++....++.+
T Consensus 316 --v~v~~tS~~~eegVm~Vrt~ACe~L 340 (620)
T KOG1490|consen 316 --VKVVQTSCVQEEGVMDVRTTACEAL 340 (620)
T ss_pred --ceEEEecccchhceeeHHHHHHHHH
Confidence 6899999999999999887776643
No 244
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.66 E-value=5.3e-15 Score=112.57 Aligned_cols=110 Identities=18% Similarity=0.190 Sum_probs=76.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCccc-c-cc------------cCCCCeeEEe---e-EEE-e--------cCeEEEEeCC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKEL-A-LT------------SKKPGKTQLI---N-HFL-V--------NKSWYIVDLP 93 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~-~-~~------------~~~~~~t~~~---~-~~~-~--------~~~~~liDtp 93 (219)
.|+++|..++|||||+++|+...-. . .. ....+.|... . .+. . +..+.++|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999864210 0 00 0011111111 1 111 1 3468899999
Q ss_pred CCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757 94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 94 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 163 (219)
|+.. |......+++. +|++++|+|+.++........++.....++|+++|+||+|+.
T Consensus 82 G~~~----------f~~~~~~~l~~---aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVD----------FSSEVTAALRL---CDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred Cccc----------cHHHHHHHHHh---cCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 9642 34455566666 899999999999888777777777777789999999999986
No 245
>PTZ00099 rab6; Provisional
Probab=99.66 E-value=4.5e-15 Score=109.42 Aligned_cols=130 Identities=13% Similarity=0.099 Sum_probs=87.4
Q ss_pred ccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH
Q 027757 64 ELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL 140 (219)
Q Consensus 64 ~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~ 140 (219)
|...+.++.+.......+..+ ..+.+|||||. +.+..++..+++. +|++|+|+|++++.++...
T Consensus 5 F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~----------e~~~~~~~~~~~~---ad~~ilv~D~t~~~sf~~~ 71 (176)
T PTZ00099 5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ----------ERFRSLIPSYIRD---SAAAIVVYDITNRQSFENT 71 (176)
T ss_pred cCCCCCCccceEEEEEEEEECCEEEEEEEEECCCh----------HHhhhccHHHhCC---CcEEEEEEECCCHHHHHHH
Confidence 444555666655433333333 26889999984 3456677788877 9999999999997766543
Q ss_pred HHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 141 DCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 141 ~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
..|+. ....|+++|+||+|+... +.+..++...+.+.+ + ..++++||++|.|++++|++|.+.+
T Consensus 72 --~~w~~~i~~~~~~~~piilVgNK~DL~~~--~~v~~~e~~~~~~~~----~--~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 72 --TKWIQDILNERGKDVIIALVGNKTDLGDL--RKVTYEEGMQKAQEY----N--TMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred --HHHHHHHHHhcCCCCeEEEEEECcccccc--cCCCHHHHHHHHHHc----C--CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 22222 246889999999998653 223333333333322 2 4789999999999999999999876
Q ss_pred hh
Q 027757 215 NY 216 (219)
Q Consensus 215 ~~ 216 (219)
..
T Consensus 142 ~~ 143 (176)
T PTZ00099 142 PN 143 (176)
T ss_pred Hh
Confidence 44
No 246
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.65 E-value=6.4e-15 Score=125.07 Aligned_cols=115 Identities=20% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-ccc---cc----------c------CCCCeeEEe---eEEEecCeEEEEeCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK-ELA---LT----------S------KKPGKTQLI---NHFLVNKSWYIVDLP 93 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~-~~~---~~----------~------~~~~~t~~~---~~~~~~~~~~liDtp 93 (219)
..+.+|+|+|.+|+|||||+++|+... ... .+ + ...+.+... ...+.+..+.++|||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 346799999999999999999997421 000 00 0 001111111 122234579999999
Q ss_pred CCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 94 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
|+.. |......+++. +|++|+|+|++++.......++......++|+++++||+|+..
T Consensus 88 G~~d----------f~~~~~~~l~~---aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHED----------FSEDTYRTLTA---VDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG 145 (526)
T ss_pred Cchh----------hHHHHHHHHHH---CCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence 9632 12223334444 8999999999987766666677777778999999999999754
No 247
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.65 E-value=2.7e-15 Score=100.57 Aligned_cols=143 Identities=22% Similarity=0.272 Sum_probs=97.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR 119 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (219)
.|++++|+.|+|||||++++-|..... ..+- .+. .+.+ ..+||||.-+. ++.-|+++.-. .
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQ----Ave---~~d~-~~IDTPGEy~~-----~~~~Y~aL~tt----~ 62 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQ----AVE---FNDK-GDIDTPGEYFE-----HPRWYHALITT----L 62 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh--cccc----eee---ccCc-cccCCchhhhh-----hhHHHHHHHHH----h
Confidence 479999999999999999999974222 1111 111 1111 25899994322 34444444333 4
Q ss_pred CCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757 120 ESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT 199 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 199 (219)
+.+|.+++|-.++++.+.... .++.....|+|-|++|.|+... ++++...+.+.+.+ ..++|.+|+.+
T Consensus 63 ~dadvi~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLaed-------~dI~~~~~~L~eaG--a~~IF~~s~~d 130 (148)
T COG4917 63 QDADVIIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLAED-------ADISLVKRWLREAG--AEPIFETSAVD 130 (148)
T ss_pred hccceeeeeecccCccccCCc---ccccccccceEEEEecccccch-------HhHHHHHHHHHHcC--CcceEEEeccC
Confidence 558999999999998776543 3344455679999999999853 35555555555443 25899999999
Q ss_pred CCChHHHHHHHHHH
Q 027757 200 GLGRDELLLHMSQL 213 (219)
Q Consensus 200 ~~~v~el~~~l~~~ 213 (219)
..|+++++++|...
T Consensus 131 ~~gv~~l~~~L~~~ 144 (148)
T COG4917 131 NQGVEELVDYLASL 144 (148)
T ss_pred cccHHHHHHHHHhh
Confidence 99999999998653
No 248
>PRK13351 elongation factor G; Reviewed
Probab=99.65 E-value=5.1e-15 Score=130.38 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=82.4
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcc-c---ccc------c------CCCCeeEE---eeEEEecCeEEEEeCCC
Q 027757 34 CPKDDRPEFAILGRSNVGKSSLINALVRKKE-L---ALT------S------KKPGKTQL---INHFLVNKSWYIVDLPG 94 (219)
Q Consensus 34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~-~---~~~------~------~~~~~t~~---~~~~~~~~~~~liDtpg 94 (219)
++.....+|+|+|..|+|||||+++|+.... . ..+ . ...+.|.. ....+.+..+.+|||||
T Consensus 3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG 82 (687)
T PRK13351 3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPG 82 (687)
T ss_pred CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCC
Confidence 3445678999999999999999999985310 0 000 0 01122221 12223355899999999
Q ss_pred CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
+.. |......+++. +|++|+|+|++++........+..+...++|+++++||+|+..
T Consensus 83 ~~d----------f~~~~~~~l~~---aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 83 HID----------FTGEVERSLRV---LDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVG 139 (687)
T ss_pred cHH----------HHHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCC
Confidence 631 23344556666 8999999999998777777777777778999999999999875
No 249
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.65 E-value=2.3e-15 Score=114.28 Aligned_cols=169 Identities=18% Similarity=0.147 Sum_probs=102.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee---EEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN---HFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
++|+++|.+|+||||++|.++|...........++|.... ....+..+.++||||+..... ...+..+.+.+...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~--~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG--SDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE--EHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc--cHHHHHHHHHHHHH
Confidence 4799999999999999999999854333322333333221 123345799999999854332 23334455555555
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHH----HHHHHHHhcCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIK----SFQQLIRENYP 187 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~ 187 (219)
...+..|++++|+... ..+..+...++++.. .-..++||+|..|...... .++.++ ...+.+-..++
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~---~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS---LEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT---HHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc---HHHHHhccCchhHhHHhhhcC
Confidence 5566789999999999 556666666665553 2357999999999766532 111222 22233333333
Q ss_pred CCCCeEEeecC------CCCChHHHHHHHHHHHhh
Q 027757 188 HHPPWIMTSSV------TGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 188 ~~~~~~~~Sa~------~~~~v~el~~~l~~~~~~ 216 (219)
-++..++.+ ....+.+|++.+.+.++.
T Consensus 155 --~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~ 187 (212)
T PF04548_consen 155 --GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQE 187 (212)
T ss_dssp --TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CEEEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence 377777776 335688888888776654
No 250
>PRK12739 elongation factor G; Reviewed
Probab=99.64 E-value=1e-14 Score=128.27 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=82.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCc----cccccc------------CCCCeeEEe---eEEEecCeEEEEeCCCCC
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKK----ELALTS------------KKPGKTQLI---NHFLVNKSWYIVDLPGYG 96 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~----~~~~~~------------~~~~~t~~~---~~~~~~~~~~liDtpg~~ 96 (219)
.....+|+|+|..++|||||+++|+... ....+. ...++|... ...+.+.++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 3457789999999999999999997531 011111 123333322 223345589999999963
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
. |.......++. +|++|+|+|+.++...++..++.++...++|.++++||+|+..
T Consensus 85 ~----------f~~e~~~al~~---~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 D----------FTIEVERSLRV---LDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG 139 (691)
T ss_pred H----------HHHHHHHHHHH---hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 1 12223333444 8999999999998888888888888888999999999999874
No 251
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.64 E-value=1.7e-14 Score=112.93 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=74.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcc-cc---ccc----------C------CCCeeEE---eeEEEecCeEEEEeCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKE-LA---LTS----------K------KPGKTQL---INHFLVNKSWYIVDLPGY 95 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~-~~---~~~----------~------~~~~t~~---~~~~~~~~~~~liDtpg~ 95 (219)
...|+|+|.+|+|||||+++|+...- .. ... . ..+.+.. ....+.+.++.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 35799999999999999999985310 00 000 0 0011111 122223458999999996
Q ss_pred CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
.. |.......++. +|++|+|+|++++........++.....++|+++++||+|+...
T Consensus 82 ~d----------f~~~~~~~l~~---aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 ED----------FSEDTYRTLTA---VDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred hH----------HHHHHHHHHHH---CCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence 31 22223334444 89999999999876655555666666678999999999998653
No 252
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.64 E-value=7.6e-15 Score=113.96 Aligned_cols=156 Identities=22% Similarity=0.248 Sum_probs=108.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
+.+.-+|+++|.|++|||||++.|++.. ......+.||........ +.++.++|+||+........|+ .
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr------G 131 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR------G 131 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCC------c
Confidence 4667899999999999999999999973 666677777765433322 3379999999975443332221 1
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc---------------------------------------------
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG--------------------------------------------- 147 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~--------------------------------------------- 147 (219)
...+.-.+.||++++|+|+.......+ .+.+.+.
T Consensus 132 ~~vlsv~R~ADlIiiVld~~~~~~~~~-~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~E 210 (365)
T COG1163 132 RQVLSVARNADLIIIVLDVFEDPHHRD-IIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILRE 210 (365)
T ss_pred ceeeeeeccCCEEEEEEecCCChhHHH-HHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHH
Confidence 223334555999999999997654321 1112222
Q ss_pred --------------------------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 027757 148 --------------------------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGL 201 (219)
Q Consensus 148 --------------------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 201 (219)
..-+|.+.|+||+|+... ++++.+.+. ..++++||+.+.
T Consensus 211 y~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~--------~~~v~isa~~~~ 275 (365)
T COG1163 211 YRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-------EELERLARK--------PNSVPISAKKGI 275 (365)
T ss_pred hCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-------HHHHHHHhc--------cceEEEecccCC
Confidence 023799999999998763 344444443 378999999999
Q ss_pred ChHHHHHHHHHHHh
Q 027757 202 GRDELLLHMSQLRN 215 (219)
Q Consensus 202 ~v~el~~~l~~~~~ 215 (219)
|+++|.+.|-+.+.
T Consensus 276 nld~L~e~i~~~L~ 289 (365)
T COG1163 276 NLDELKERIWDVLG 289 (365)
T ss_pred CHHHHHHHHHHhhC
Confidence 99999998876553
No 253
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=8.7e-15 Score=120.37 Aligned_cols=159 Identities=21% Similarity=0.209 Sum_probs=114.4
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCc-------------ccccccCCCCeeEEe---eEEEec---CeEEEEeCCC
Q 027757 34 CPKDDRPEFAILGRSNVGKSSLINALVRKK-------------ELALTSKKPGKTQLI---NHFLVN---KSWYIVDLPG 94 (219)
Q Consensus 34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~-------------~~~~~~~~~~~t~~~---~~~~~~---~~~~liDtpg 94 (219)
.|.++..++.|+.....|||||..+|+... +.....+..|.|... ..++.+ +.+.+|||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence 444677889999999999999999998642 001222445555432 233344 5789999999
Q ss_pred CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHh
Q 027757 95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDEN 174 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 174 (219)
+.++..... +....+|++|+|+|++++...+...-+...-+.+..+|.|+||+|+... +
T Consensus 135 HvDFs~EVs-------------Rslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a--------d 193 (650)
T KOG0462|consen 135 HVDFSGEVS-------------RSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA--------D 193 (650)
T ss_pred cccccceeh-------------ehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC--------C
Confidence 765432221 1122289999999999999988877677777789999999999999764 3
Q ss_pred HHHHHHHHHhcCC-CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 175 IKSFQQLIRENYP-HHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 175 ~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.++...++...+. ...+++.+||++|.|+.+++++|.+.
T Consensus 194 pe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~r 233 (650)
T KOG0462|consen 194 PERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRR 233 (650)
T ss_pred HHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhh
Confidence 4444444444343 34589999999999999999999874
No 254
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.62 E-value=2.7e-14 Score=121.33 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-cccc---cc----------------CCCCeeEEe---eEEEecCeEEEEeCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK-ELAL---TS----------------KKPGKTQLI---NHFLVNKSWYIVDLP 93 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~-~~~~---~~----------------~~~~~t~~~---~~~~~~~~~~liDtp 93 (219)
..+.+|+|+|.+++|||||+++|+... .... +. ...+.+... ...+.+..+.++|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 346799999999999999999986421 1110 00 011222211 122234578999999
Q ss_pred CCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757 94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 94 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 163 (219)
|+.. |......+++. +|++|+|+|+.++.......+++.....++|+++++||+|+.
T Consensus 89 G~~d----------f~~~~~~~l~~---aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~ 145 (527)
T TIGR00503 89 GHED----------FSEDTYRTLTA---VDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD 145 (527)
T ss_pred Chhh----------HHHHHHHHHHh---CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 9631 12222333444 899999999998765555566666666789999999999985
No 255
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.62 E-value=3.7e-14 Score=109.75 Aligned_cols=129 Identities=22% Similarity=0.146 Sum_probs=81.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcc-hhhhHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDV-TRMDWSSFT 112 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~-~~~~~~~~~ 112 (219)
...++|+++|.+|+|||||+|+|++.. ........++|.....+. .+..+.++||||+.....+.. .+.... ..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~-~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~-~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGER-KAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS-SI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCC-CcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH-HH
Confidence 557899999999999999999999974 444444544554433222 234799999999875432111 111112 22
Q ss_pred HHHhhccCCccEEEEEEeCCC-CCCcccHHHHHHhcc-C----CCcEEEEEEcccccccccC
Q 027757 113 KGYFLNRESLVGVLLLIDASV-PPQKIDLDCANWLGR-N----NIPLTFVFTKCDKMKVAKG 168 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~-~----~~p~iiv~nK~D~~~~~~~ 168 (219)
..++. ....|+++||..++. .....+..+++.+.. . -.++++|+||+|..++++.
T Consensus 107 ~~~l~-~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 107 KRYLK-KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred HHHHh-ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 33333 234688888876664 234444455665553 1 2579999999998876554
No 256
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.62 E-value=1.6e-14 Score=110.63 Aligned_cols=145 Identities=21% Similarity=0.170 Sum_probs=92.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
.....|+++|.+|+|||||++.+.+...........++. .. ....+.++.++||||.. ..+.+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~------------~~~l~--- 99 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI------------NAMID--- 99 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH------------HHHHH---
Confidence 445679999999999999999999863222222233321 11 11235578999999831 11211
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEE-EEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLT-FVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
..+.+|.+++|+|++.+....+..++.++...+.|.+ +|+||+|+..... ......+++...+........+++++
T Consensus 100 -~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~--~~~~~~~~l~~~~~~~~~~~~ki~~i 176 (225)
T cd01882 100 -IAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNK--TLRKTKKRLKHRFWTEVYQGAKLFYL 176 (225)
T ss_pred -HHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHH--HHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 1234899999999998777777777788877778854 5999999874311 01111223333233223334799999
Q ss_pred ecCCCC
Q 027757 196 SSVTGL 201 (219)
Q Consensus 196 Sa~~~~ 201 (219)
||++..
T Consensus 177 Sa~~~~ 182 (225)
T cd01882 177 SGIVHG 182 (225)
T ss_pred eeccCC
Confidence 999864
No 257
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.61 E-value=2.8e-14 Score=119.24 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=93.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc-cc----------------------------cccCCCCeeEEeeEEEe---cC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKE-LA----------------------------LTSKKPGKTQLINHFLV---NK 85 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~~---~~ 85 (219)
....|+++|..++|||||+.+|+...- .. ......+.|.+...... +.
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 357899999999999999999985210 00 00112234443332222 33
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC-------cccHHHHHHhccCCCc-EEEEE
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ-------KIDLDCANWLGRNNIP-LTFVF 157 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~ 157 (219)
.+.++||||+. .+..........+|++|+|+|+.++.. .+..+.+..+...++| +++++
T Consensus 86 ~i~liDtPGh~-------------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v 152 (447)
T PLN00043 86 YCTVIDAPGHR-------------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC 152 (447)
T ss_pred EEEEEECCCHH-------------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence 78999999952 333333344445999999999997521 2334555566667785 68899
Q ss_pred EcccccccccCCCchHhHHHHHHHHHh----cC--CCCCCeEEeecCCCCChHH
Q 027757 158 TKCDKMKVAKGRRPDENIKSFQQLIRE----NY--PHHPPWIMTSSVTGLGRDE 205 (219)
Q Consensus 158 nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~Sa~~~~~v~e 205 (219)
||+|+.+.. .....+++..+.+.. .. ...++++++||.+|.|+.+
T Consensus 153 NKmD~~~~~---~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 153 NKMDATTPK---YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EcccCCchh---hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 999976211 112233333333322 11 1247899999999999853
No 258
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.60 E-value=1.7e-14 Score=109.89 Aligned_cols=163 Identities=17% Similarity=0.146 Sum_probs=90.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
||++||+.|+||||+.+.++++ ..+..+...+.|..+..... +-.+.+||+||-.... +..+....+..+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~-~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~-----~~~~~~~~~~if 74 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHK-YSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFM-----ENYFNSQREEIF 74 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTT-----HTTHTCCHHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcC-CCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccc-----cccccccHHHHH
Confidence 7999999999999999999997 56666666666665544443 2389999999953221 111122334555
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH----HHHHhc--cCCCcEEEEEEcccccccccCCCchHh-HHHHHHHHHhcCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD----CANWLG--RNNIPLTFVFTKCDKMKVAKGRRPDEN-IKSFQQLIRENYPHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 189 (219)
+. ++++|||+|+....-..+.. .++.+. .++..+.++++|+|+...+.+...-.. .+++.+.+.......
T Consensus 75 ~~---v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~ 151 (232)
T PF04670_consen 75 SN---VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIED 151 (232)
T ss_dssp CT---ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred hc---cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 66 89999999999544333322 122222 278899999999999865433222222 222333333333334
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+.++.+|.-.. .++++..+.+.+
T Consensus 152 ~~~~~TSI~D~----Sly~A~S~Ivq~ 174 (232)
T PF04670_consen 152 ITFFLTSIWDE----SLYEAWSKIVQK 174 (232)
T ss_dssp EEEEEE-TTST----HHHHHHHHHHHT
T ss_pred eEEEeccCcCc----HHHHHHHHHHHH
Confidence 67888887763 355555555443
No 259
>PRK00007 elongation factor G; Reviewed
Probab=99.60 E-value=2e-14 Score=126.36 Aligned_cols=117 Identities=16% Similarity=0.162 Sum_probs=83.4
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCc--c--ccccc------------CCCCeeEEe---eEEEecCeEEEEeCCCCC
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKK--E--LALTS------------KKPGKTQLI---NHFLVNKSWYIVDLPGYG 96 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~--~--~~~~~------------~~~~~t~~~---~~~~~~~~~~liDtpg~~ 96 (219)
.....+|+|+|.+++|||||+++|+... . ...+. ...++|.+. ...+.+..+.++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 3457799999999999999999997421 0 00111 133344432 223345689999999963
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
. +.....+....+|++|+|+|+..+...++..++.++...++|.++++||+|+...
T Consensus 87 ~-------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 87 D-------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA 142 (693)
T ss_pred H-------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 1 1112333334489999999999998888888899999999999999999998753
No 260
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.59 E-value=4.1e-15 Score=108.63 Aligned_cols=125 Identities=23% Similarity=0.359 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH-
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG- 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~- 114 (219)
...|+|+|++|+|||+|+.+|........+++. . ....... .+..+.++|+||+..-. ..+.+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e--~n~~~~~~~~~~~~~~lvD~PGH~rlr---------~~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E--NNIAYNVNNSKGKKLRLVDIPGHPRLR---------SKLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-S--EEEECCGSSTCGTCECEEEETT-HCCC---------HHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c--CCceEEeecCCCCEEEEEECCCcHHHH---------HHHHHhh
Confidence 568999999999999999999997433333333 1 1111111 24479999999974221 112222
Q ss_pred -HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc---------cCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757 115 -YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG---------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ 179 (219)
Q Consensus 115 -~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~---------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 179 (219)
+... +.+||||+|++..... -.+..+++. ...+|++|++||.|+............++.-+
T Consensus 71 ~~~~~---~k~IIfvvDSs~~~~~-~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei 141 (181)
T PF09439_consen 71 KYLSN---AKGIIFVVDSSTDQKE-LRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEI 141 (181)
T ss_dssp HHHGG---EEEEEEEEETTTHHHH-HHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHH
T ss_pred hchhh---CCEEEEEEeCccchhh-HHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHH
Confidence 3444 8999999999742111 122233332 36799999999999976543333333333333
No 261
>PRK13768 GTPase; Provisional
Probab=99.59 E-value=2.6e-14 Score=111.21 Aligned_cols=122 Identities=21% Similarity=0.174 Sum_probs=74.6
Q ss_pred eEEEEeCCCCCC-CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEc
Q 027757 86 SWYIVDLPGYGF-AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTK 159 (219)
Q Consensus 86 ~~~liDtpg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK 159 (219)
.+.++|+||... ..+.. .+..+.+...+ .. ++++++|+|+....+..+.....++. ..++|+++|+||
T Consensus 98 ~~~~~d~~g~~~~~~~~~----~~~~~~~~l~~-~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK 171 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRE----SGRKLVERLSG-SS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK 171 (253)
T ss_pred CEEEEeCCcHHHHHhhhH----HHHHHHHHHHh-cC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence 689999999532 11111 11222222221 11 68999999998766665554444443 468999999999
Q ss_pred ccccccccCCCchHhHHH---------------------HHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 160 CDKMKVAKGRRPDENIKS---------------------FQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 160 ~D~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+|+....+.+.....++. +.+.+.. .+...+++++|++++.|+++++++|.+.+
T Consensus 172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~-~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEE-TGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHH-HCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 999865332111111110 0111111 22335889999999999999999998865
No 262
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.58 E-value=6.1e-14 Score=123.45 Aligned_cols=117 Identities=17% Similarity=0.127 Sum_probs=82.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCc-cc---ccccC------------CCCeeEEe---eEEEecCeEEEEeCCCCC
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKK-EL---ALTSK------------KPGKTQLI---NHFLVNKSWYIVDLPGYG 96 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~-~~---~~~~~------------~~~~t~~~---~~~~~~~~~~liDtpg~~ 96 (219)
.....+|+|+|.+++|||||+|+|+... .. ....+ ..++|... ...+.+.++.++||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 3457799999999999999999997531 01 00111 22344332 222345589999999974
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
.. ......+++. +|++|+|+|+.++....+...+.++...++|+++++||+|+...
T Consensus 87 ~~----------~~~~~~~l~~---~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DF----------TVEVERSLRV---LDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA 142 (689)
T ss_pred ch----------hHHHHHHHHH---hCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence 31 1223444555 89999999999987777777888888889999999999998753
No 263
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=3.3e-14 Score=104.12 Aligned_cols=163 Identities=18% Similarity=0.242 Sum_probs=103.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
.....|+++|++++|||+|.-.|........+++... ........+....++|.||+.. .+.-...++
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep--n~a~~r~gs~~~~LVD~PGH~r----------lR~kl~e~~ 103 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP--NEATYRLGSENVTLVDLPGHSR----------LRRKLLEYL 103 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeecc--ceeeEeecCcceEEEeCCCcHH----------HHHHHHHHc
Confidence 3457899999999999999988887643332222111 1122223344579999999741 122334455
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhc---------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh---
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG---------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE--- 184 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~---------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--- 184 (219)
...+.+-++|||+|+........ +..+++. ...+|+++++||.|+......++..+.++.-++.+..
T Consensus 104 ~~~~~akaiVFVVDSa~f~k~vr-dvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRs 182 (238)
T KOG0090|consen 104 KHNYSAKAIVFVVDSATFLKNVR-DVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRS 182 (238)
T ss_pred cccccceeEEEEEeccccchhhH-HHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHh
Confidence 54456899999999986443322 2222222 3678999999999998776655555555544443322
Q ss_pred --------------------------cCC-CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 185 --------------------------NYP-HHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 185 --------------------------~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
++. ..+.+.+.|++++ +++++.+|+.+.
T Consensus 183 a~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 183 ALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred hhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 111 1245778888887 899999999875
No 264
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.57 E-value=6.5e-14 Score=111.89 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=57.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EE-------------------------ecCeEEEEeCCC
Q 027757 42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FL-------------------------VNKSWYIVDLPG 94 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~-------------------------~~~~~~liDtpg 94 (219)
|+++|.+++|||||+|+|++.. ....+.+++|..+.. .. ...++.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 5899999999999999999974 355666666644321 11 012589999999
Q ss_pred CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757 95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV 133 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 133 (219)
+.... ..+..+...++...+.+|++++|+|+..
T Consensus 79 lv~ga------~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 79 LVPGA------HEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCCCc------cchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 74321 1224455566555555999999999974
No 265
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.57 E-value=1.5e-13 Score=95.30 Aligned_cols=157 Identities=11% Similarity=0.115 Sum_probs=109.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe------cCeEEEEeCCCCCCCCCCcchhhhHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV------NKSWYIVDLPGYGFAKAPDVTRMDWSS 110 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~------~~~~~liDtpg~~~~~~~~~~~~~~~~ 110 (219)
+...||+++|..++|||++++.|+... .........+..++..... ...+.+-||.|+... + ..
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~-~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~------~---~e 76 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGN-HVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG------Q---QE 76 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhcc-CCCCCccccchhhheeEeeecCCChhheEEEeecccccCc------h---hh
Confidence 346799999999999999999998763 2222222222222221111 125889999997432 2 23
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCcccHHHHH-Hhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757 111 FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN-WLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185 (219)
Q Consensus 111 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~-~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
+-+.|+.. +|++++|+++.++.++...++++ ++.+ ..+|++++.||+|+.++ +++.......|.+.-.
T Consensus 77 Lprhy~q~---aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~rEk-- 149 (198)
T KOG3883|consen 77 LPRHYFQF---ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP--REVDMDVAQIWAKREK-- 149 (198)
T ss_pred hhHhHhcc---CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc--hhcCHHHHHHHHhhhh--
Confidence 55777777 89999999999999887766554 5553 56899999999999754 4444444445544432
Q ss_pred CCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 186 YPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+..+++++.....+-|.|.+++...
T Consensus 150 ----vkl~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 150 ----VKLWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred ----eeEEEEEeccchhhhhHHHHHHHhc
Confidence 6789999999999999998887644
No 266
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=2.1e-13 Score=109.34 Aligned_cols=151 Identities=18% Similarity=0.218 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-----------------------------ccccccCCCCeeEEeeEEEe---c
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK-----------------------------ELALTSKKPGKTQLINHFLV---N 84 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----------------------------~~~~~~~~~~~t~~~~~~~~---~ 84 (219)
..+.+++++|...+|||||+.+|+... +.....+..|.|.+...... .
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 446899999999999999999998541 00112233355554443332 3
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------CcccHHHHHHhccCC-CcEEEE
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKIDLDCANWLGRNN-IPLTFV 156 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~-~p~iiv 156 (219)
..+.++|+||+ +.+.+....++.+||+.|+|+|+..+. ..+..+......-.+ ..++++
T Consensus 85 ~~~tIiDaPGH-------------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVa 151 (428)
T COG5256 85 YNFTIIDAPGH-------------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVA 151 (428)
T ss_pred ceEEEeeCCch-------------HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEE
Confidence 46999999995 456677777888899999999999873 333344333333333 458999
Q ss_pred EEcccccccccCCCchHhHHHHHHHHHh---cC--CC-CCCeEEeecCCCCChHH
Q 027757 157 FTKCDKMKVAKGRRPDENIKSFQQLIRE---NY--PH-HPPWIMTSSVTGLGRDE 205 (219)
Q Consensus 157 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~--~~-~~~~~~~Sa~~~~~v~e 205 (219)
+||+|..+- .++.+++....+.. .. .. .++++++|+..|+|+.+
T Consensus 152 vNKMD~v~w-----de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 152 VNKMDLVSW-----DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred EEccccccc-----CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 999998763 23455555444333 22 22 47899999999999765
No 267
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.56 E-value=9.1e-14 Score=124.80 Aligned_cols=151 Identities=18% Similarity=0.222 Sum_probs=99.7
Q ss_pred CCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---------------------eEEEEeCCCCCCCCCCcchhhhH
Q 027757 50 VGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---------------------SWYIVDLPGYGFAKAPDVTRMDW 108 (219)
Q Consensus 50 ~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~liDtpg~~~~~~~~~~~~~~ 108 (219)
++||||+.++.+... ...-.-|.|.+++.+.+.. .+.++||||+. .|
T Consensus 472 ~~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe----------~F 539 (1049)
T PRK14845 472 VHNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE----------AF 539 (1049)
T ss_pred cccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH----------HH
Confidence 349999999999742 3344556777665543321 27999999942 22
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCC-----------chHhHHH
Q 027757 109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRR-----------PDENIKS 177 (219)
Q Consensus 109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~-----------~~~~~~~ 177 (219)
..+.... ...+|++++|+|++++...+..+.+..+...++|+++|+||+|+.+...... .+....+
T Consensus 540 ~~lr~~g---~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~e 616 (1049)
T PRK14845 540 TSLRKRG---GSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTE 616 (1049)
T ss_pred HHHHHhh---cccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHH
Confidence 3333333 3348999999999987777777777888888899999999999864311100 0001111
Q ss_pred H-------HHHHHh------------cCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 178 F-------QQLIRE------------NYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 178 ~-------~~~~~~------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+ ..++.. .+...++++++||++|.|+++|+.+|..+.+
T Consensus 617 l~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 617 LEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 1 111111 1344679999999999999999999876544
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.55 E-value=2.3e-13 Score=111.88 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=59.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE--E-------------------------ecCeEEEEeC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF--L-------------------------VNKSWYIVDL 92 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~--~-------------------------~~~~~~liDt 92 (219)
++|+|+|.+|+|||||+|+|++.. ....+.+++|..+... . ....+.++|+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 589999999999999999999974 3445666666543321 1 1124789999
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757 93 PGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS 132 (219)
Q Consensus 93 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~ 132 (219)
||+.... ...+.+...++...+.+|++++|+|+.
T Consensus 80 aGl~~ga------~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGA------HEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CCcCCCc------cchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 9975322 112345556656666699999999997
No 269
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=6.7e-14 Score=113.58 Aligned_cols=157 Identities=20% Similarity=0.218 Sum_probs=112.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCc-------------ccccccCCCCeeEEeeEEEe-----c---CeEEEEeCCC
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKK-------------ELALTSKKPGKTQLINHFLV-----N---KSWYIVDLPG 94 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~-------------~~~~~~~~~~~t~~~~~~~~-----~---~~~~liDtpg 94 (219)
..+..+..|+..-..|||||..+++... +.+...+..|.|........ + +.+.++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 3456678999999999999999998652 12233445566654333221 1 3588999999
Q ss_pred CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHh
Q 027757 95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDEN 174 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~ 174 (219)
+.++.+... ++ ...|.+.++|+|++++...+.+.-....-+.+.-++.|+||+|+... +
T Consensus 86 HVDFsYEVS-----RS--------LAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~A--------d 144 (603)
T COG0481 86 HVDFSYEVS-----RS--------LAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAA--------D 144 (603)
T ss_pred ccceEEEeh-----hh--------HhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCC--------C
Confidence 876554432 12 22278999999999998888776666666789999999999999865 3
Q ss_pred HHHHHHHHHhcCCC-CCCeEEeecCCCCChHHHHHHHHHH
Q 027757 175 IKSFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 175 ~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.++..+++....+. ....+.+|||+|.|++++++.|.+.
T Consensus 145 pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~ 184 (603)
T COG0481 145 PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEK 184 (603)
T ss_pred HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhh
Confidence 44445555444442 3467999999999999999998764
No 270
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.54 E-value=3.3e-14 Score=113.69 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=66.7
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
..++++||+|+...... . ...+|.+++|.++..+...+. .+ ........++|+||+|+.+
T Consensus 149 ~d~viieT~Gv~qs~~~---------i-------~~~aD~vlvv~~p~~gd~iq~---~k-~gi~E~aDIiVVNKaDl~~ 208 (332)
T PRK09435 149 YDVILVETVGVGQSETA---------V-------AGMVDFFLLLQLPGAGDELQG---IK-KGIMELADLIVINKADGDN 208 (332)
T ss_pred CCEEEEECCCCccchhH---------H-------HHhCCEEEEEecCCchHHHHH---HH-hhhhhhhheEEeehhcccc
Confidence 47899999998632111 1 112899999976443332211 11 0112334499999999876
Q ss_pred cccCCCchHhHHHHHHHHHhcC----CCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 165 VAKGRRPDENIKSFQQLIRENY----PHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.... .....++...+.... .+.+|++.+||+++.|+++|++++.++...+
T Consensus 209 ~~~a---~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 209 KTAA---RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred hhHH---HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 4311 122223333332211 1336899999999999999999999987654
No 271
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.53 E-value=2.3e-13 Score=107.02 Aligned_cols=125 Identities=15% Similarity=0.124 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe---eEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI---NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+||||++|+|++. ....++...+++... .....+.++.++||||+.... ...+......+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~---~~~e~~~~~ik 111 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG---YINDQAVNIIK 111 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH---HHHHHHHHHHH
Confidence 45789999999999999999999997 344444444333222 122234589999999986431 11122233444
Q ss_pred HHhhccCCccEEEEEEeCCC-CCCcccHHHHHHhcc-----CCCcEEEEEEcccccccc
Q 027757 114 GYFLNRESLVGVLLLIDASV-PPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVA 166 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~ 166 (219)
.++.. ...|+++||...+. ..+..+...++.+.. .-.++++|+|++|..+++
T Consensus 112 ~~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd 169 (313)
T TIGR00991 112 RFLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD 169 (313)
T ss_pred HHhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence 44433 35799999965543 233344444444443 236799999999987543
No 272
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.52 E-value=7.7e-13 Score=103.68 Aligned_cols=162 Identities=21% Similarity=0.221 Sum_probs=108.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccc-----cCCCCeeEEeeEEE--e----------cCeEEEEeCCCCCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALT-----SKKPGKTQLINHFL--V----------NKSWYIVDLPGYGFAKAP 101 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~-----~~~~~~t~~~~~~~--~----------~~~~~liDtpg~~~~~~~ 101 (219)
.+++.++|...+|||||..+|.....-+.. +...+.|.+..... . ..++.++|+||+
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH------ 80 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH------ 80 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc------
Confidence 488999999999999999999865322222 22334444432211 1 125799999997
Q ss_pred cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchH-hHHHHHH
Q 027757 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDE-NIKSFQQ 180 (219)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-~~~~~~~ 180 (219)
.++.+..+.+++-.|..++|+|+..+...+..+.+-.-...-...++|+||+|..++..+....+ ....+.+
T Consensus 81 -------asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~K 153 (522)
T KOG0461|consen 81 -------ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRK 153 (522)
T ss_pred -------HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHH
Confidence 45667777777778999999999987666654433322234456799999999988755432222 2223333
Q ss_pred HHHh-cCCCCCCeEEeecCCC----CChHHHHHHHHHH
Q 027757 181 LIRE-NYPHHPPWIMTSSVTG----LGRDELLLHMSQL 213 (219)
Q Consensus 181 ~~~~-~~~~~~~~~~~Sa~~~----~~v~el~~~l~~~ 213 (219)
.+.+ .+....|++++|+..| .++.||.+.|...
T Consensus 154 tLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~ 191 (522)
T KOG0461|consen 154 TLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESR 191 (522)
T ss_pred HHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence 4443 3345689999999999 6777777776553
No 273
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.9e-13 Score=91.11 Aligned_cols=157 Identities=14% Similarity=0.159 Sum_probs=106.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...+|+.+|-.++||||++..|.-.. ...+.++.| ..+..++.. -.+..+|..| +...+.++..||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvG--FnvetVtykN~kfNvwdvGG----------qd~iRplWrhYy 82 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKNVKFNVWDVGG----------QDKIRPLWRHYY 82 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-Ccccccccc--eeEEEEEeeeeEEeeeeccC----------chhhhHHHHhhc
Confidence 37899999999999999999998863 333333333 333444433 3677777766 556688999999
Q ss_pred hccCCccEEEEEEeCCCCCCccc--HHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKID--LDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
.+ ..++|||+|+.+...-.. .++.+.+.. .+.|+++..||-|+.+.... .++..+.+. ...-+...-
T Consensus 83 ~g---tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p----qei~d~leL-e~~r~~~W~ 154 (180)
T KOG0071|consen 83 TG---TQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP----QEIQDKLEL-ERIRDRNWY 154 (180)
T ss_pred cC---CceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH----HHHHHHhcc-ccccCCccE
Confidence 99 788999999987532211 122222222 57899999999999876322 233333221 111223355
Q ss_pred eEEeecCCCCChHHHHHHHHHHHh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+.++|+.+|+|+.|-+.|+....+
T Consensus 155 vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 155 VQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred eeccccccchhHHHHHHHHHhhcc
Confidence 789999999999999999987654
No 274
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=7.7e-14 Score=95.80 Aligned_cols=158 Identities=17% Similarity=0.158 Sum_probs=104.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
...+++++|--|+||||+.-++.-. ....+-|+++-...... ..+-++.+||..|- ...+-.+++||.
T Consensus 17 ~e~rililgldGaGkttIlyrlqvg-evvttkPtigfnve~v~-yKNLk~~vwdLggq----------tSirPyWRcYy~ 84 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVG-EVVTTKPTIGFNVETVP-YKNLKFQVWDLGGQ----------TSIRPYWRCYYA 84 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccC-cccccCCCCCcCccccc-cccccceeeEccCc----------ccccHHHHHHhc
Confidence 5679999999999999987666543 23333344432222111 14557888888773 233678999999
Q ss_pred ccCCccEEEEEEeCCCCCC--cccHHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh--cCCCCC
Q 027757 118 NRESLVGVLLLIDASVPPQ--KIDLDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE--NYPHHP 190 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 190 (219)
+ .|++|||+|.++... ....++...+.+ .+-.++++.||.|..... -..+....++. .-....
T Consensus 85 d---t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~-------t~~E~~~~L~l~~Lk~r~~ 154 (182)
T KOG0072|consen 85 D---TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL-------TRSEVLKMLGLQKLKDRIW 154 (182)
T ss_pred c---cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh-------hHHHHHHHhChHHHhhhee
Confidence 8 899999999997543 222344455554 346788999999976531 12222222211 112236
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.+|..||..|.|+++..+|+.+-++..
T Consensus 155 ~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 155 QIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred EEEeeccccccCCcHHHHHHHHHHhcc
Confidence 899999999999999999999987754
No 275
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.51 E-value=1.1e-13 Score=111.68 Aligned_cols=166 Identities=19% Similarity=0.136 Sum_probs=87.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccc---cCCCCeeEEeeEEEecC--eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALT---SKKPGKTQLINHFLVNK--SWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~---~~~~~~t~~~~~~~~~~--~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
.+++|+|+|.+|+|||||||+|.|-..-... .....+|.....+.... .+++||.||++-..... +.+.
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~------~~Yl 107 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPP------EEYL 107 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--H------HHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCH------HHHH
Confidence 4679999999999999999999874221111 11223444455555443 79999999986432211 1111
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccccc-----CCCc-hHhHHH----HHHHH
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAK-----GRRP-DENIKS----FQQLI 182 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~-----~~~~-~~~~~~----~~~~~ 182 (219)
+.. .....|.+|++.+ ...+..+..+.+.+.+.++|+++|-||+|..-..+ ..-. ++-+++ ..+.+
T Consensus 108 ~~~--~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 108 KEV--KFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp HHT--TGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred HHc--cccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 111 1222587666554 23456667778888889999999999999621111 0111 111222 23334
Q ss_pred HhcCCCCCCeEEeecCC--CCChHHHHHHHHHH
Q 027757 183 RENYPHHPPWIMTSSVT--GLGRDELLLHMSQL 213 (219)
Q Consensus 183 ~~~~~~~~~~~~~Sa~~--~~~v~el~~~l~~~ 213 (219)
....-..+++|.+|+.+ ..+++.|.+.|.+.
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~d 216 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKD 216 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHH
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHH
Confidence 44444567899999887 35688888777653
No 276
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.50 E-value=8.1e-13 Score=101.32 Aligned_cols=78 Identities=22% Similarity=0.196 Sum_probs=58.3
Q ss_pred eEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc-HHHHHHhccCCCcEEEEEEccc
Q 027757 86 SWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-LDCANWLGRNNIPLTFVFTKCD 161 (219)
Q Consensus 86 ~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~D 161 (219)
.++++||||+..... .......++.+...|+... .+.+++|+|+.......+ .++.+++.....|+++|+||+|
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~--~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE--ECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc--cCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 689999999853211 1223455667777777642 468999999987666656 5788888889999999999999
Q ss_pred cccc
Q 027757 162 KMKV 165 (219)
Q Consensus 162 ~~~~ 165 (219)
....
T Consensus 204 ~~~~ 207 (240)
T smart00053 204 LMDE 207 (240)
T ss_pred CCCc
Confidence 8764
No 277
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.48 E-value=9e-14 Score=95.20 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=109.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...+||+++|-.+||||||+..|.+. +.....++.|-......+....++.+||..|-. -.+-++..||
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr----------~IRpyWsNYy 83 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQR----------GIRPYWSNYY 83 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeecCcEEEEEEecCCcc----------ccchhhhhhh
Confidence 55789999999999999999999997 677777777755554555555678889988732 2245778888
Q ss_pred hccCCccEEEEEEeCCCCCCccc--HHHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKID--LDCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 189 (219)
.. .|++|||+|.++...+.+ .++.+.+. -..+|++|..||-|++.... .++....+.... ...
T Consensus 84 en---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~-------~eeia~klnl~~lrdRs 153 (185)
T KOG0074|consen 84 EN---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK-------VEEIALKLNLAGLRDRS 153 (185)
T ss_pred hc---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc-------hHHHHHhcchhhhhhce
Confidence 88 899999999877544332 23333333 36799999999999886532 222222211111 113
Q ss_pred CCeEEeecCCCCChHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
..+-++||.++.|+.+-.+|++.
T Consensus 154 whIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 154 WHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred EEeeeCccccccCccCcchhhhc
Confidence 56789999999999888888765
No 278
>PRK12740 elongation factor G; Reviewed
Probab=99.48 E-value=1.4e-12 Score=114.87 Aligned_cols=107 Identities=15% Similarity=0.141 Sum_probs=72.3
Q ss_pred EcCCCCCHHHHHHHHhcCccc--c--cc------c------CCCCeeEEe---eEEEecCeEEEEeCCCCCCCCCCcchh
Q 027757 45 LGRSNVGKSSLINALVRKKEL--A--LT------S------KKPGKTQLI---NHFLVNKSWYIVDLPGYGFAKAPDVTR 105 (219)
Q Consensus 45 ~G~~g~GKSslin~l~~~~~~--~--~~------~------~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~~~~~~~ 105 (219)
+|..++|||||+++|+...-. . .. . ...+.|... ...+.+..+.++||||+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~-------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD-------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence 599999999999999654200 0 00 0 012222221 2223345899999999631
Q ss_pred hhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 106 MDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 106 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
|......+++. +|++++|+|++.+........+..+...++|+++|+||+|+..
T Consensus 73 --~~~~~~~~l~~---aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 73 --FTGEVERALRV---LDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG 126 (668)
T ss_pred --HHHHHHHHHHH---hCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence 22333444555 8999999999998777766677777778899999999999864
No 279
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.48 E-value=2.7e-13 Score=112.49 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=105.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE-EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF-LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
...+||+++|..|+|||||+-+++...+...+.+......-+... ...-...++||...... +......
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~----------~~~l~~E 76 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDD----------RLCLRKE 76 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccch----------hHHHHHH
Confidence 446899999999999999999999987776665554433222222 22235789999753211 1112333
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
++. ||++.++++.+++.+.. .-...|+.. .++|+|+|+||+|......... +.....+..++.+
T Consensus 77 irk---A~vi~lvyavd~~~T~D-~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~-e~~~~pim~~f~E--- 148 (625)
T KOG1707|consen 77 IRK---ADVICLVYAVDDESTVD-RISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSD-EVNTLPIMIAFAE--- 148 (625)
T ss_pred Hhh---cCEEEEEEecCChHHhh-hhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccch-hHHHHHHHHHhHH---
Confidence 344 89999999998876643 333456552 6799999999999876643311 1134444444433
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
--.+++|||++..++.|+|.+-++.
T Consensus 149 -iEtciecSA~~~~n~~e~fYyaqKa 173 (625)
T KOG1707|consen 149 -IETCIECSALTLANVSELFYYAQKA 173 (625)
T ss_pred -HHHHHhhhhhhhhhhHhhhhhhhhe
Confidence 2468999999999999999887664
No 280
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.47 E-value=6.9e-13 Score=107.51 Aligned_cols=164 Identities=23% Similarity=0.180 Sum_probs=107.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc--ccc------------cccCCCCeeEE---eeEEEecCeEEEEeCCCCCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKK--ELA------------LTSKKPGKTQL---INHFLVNKSWYIVDLPGYGFAKA 100 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~--~~~------------~~~~~~~~t~~---~~~~~~~~~~~liDtpg~~~~~~ 100 (219)
...+|+|+.....|||||+..|+.++ |.. ......|.|.- ....+.+.++.++||||+..+
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADF-- 81 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADF-- 81 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCc--
Confidence 35679999999999999999999764 111 01122233321 122334558999999997433
Q ss_pred CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHH
Q 027757 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180 (219)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~ 180 (219)
+|+. +.... . +|++++++|+.++.-.+.+-+++..-+.+.+.|+|+||+|........+.++-.+-|.+
T Consensus 82 --GGEV--ERvl~----M---VDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~ 150 (603)
T COG1217 82 --GGEV--ERVLS----M---VDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVE 150 (603)
T ss_pred --cchh--hhhhh----h---cceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence 2222 11222 2 89999999999988888776777666778999999999999876433332222222222
Q ss_pred HHHhcCCCCCCeEEeecCCC----------CChHHHHHHHHHHH
Q 027757 181 LIRENYPHHPPWIMTSSVTG----------LGRDELLLHMSQLR 214 (219)
Q Consensus 181 ~~~~~~~~~~~~~~~Sa~~~----------~~v~el~~~l~~~~ 214 (219)
.-......+.|++..|+..| .++.-||+.|.+++
T Consensus 151 L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 151 LGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred hCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 11112233679999999987 36788888887764
No 281
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.2e-12 Score=104.18 Aligned_cols=155 Identities=21% Similarity=0.210 Sum_probs=116.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 41 EFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
-|+..|....|||||+.++++.. .........|+|.+..++.. ++...++|.||+. .+....+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~-------------~~i~~mi 68 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHP-------------DFISNLL 68 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcH-------------HHHHHHH
Confidence 46778999999999999999863 33445566788888776654 3479999999973 3334444
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHHHHHHHhcCC-CCCCeEE
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP-HHPPWIM 194 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 194 (219)
.+....|..++|+|+.++...+..+.+..+.-.+++ .++|+||+|+.+. ..+++..+++..... ...++|.
T Consensus 69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~-------~r~e~~i~~Il~~l~l~~~~i~~ 141 (447)
T COG3276 69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE-------ARIEQKIKQILADLSLANAKIFK 141 (447)
T ss_pred hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH-------HHHHHHHHHHHhhcccccccccc
Confidence 444457999999999998888887777777776665 5999999999875 244555544433322 3467899
Q ss_pred eecCCCCChHHHHHHHHHHHh
Q 027757 195 TSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+|+++|.|+++|.+.|.++.+
T Consensus 142 ~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 142 TSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred cccccCCCHHHHHHHHHHhhh
Confidence 999999999999999998773
No 282
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=1.8e-12 Score=110.12 Aligned_cols=164 Identities=22% Similarity=0.257 Sum_probs=115.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---------------------CeEEEEeCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---------------------KSWYIVDLPGYGF 97 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------~~~~liDtpg~~~ 97 (219)
.|-|||+|...+|||-|+..+-+.+ -......|.|..++..... ..+.+|||||+
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tN--VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh-- 550 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTN--VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH-- 550 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccc--cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc--
Confidence 5789999999999999999999863 3344445555544322210 14688999996
Q ss_pred CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccccc----------
Q 027757 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAK---------- 167 (219)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~---------- 167 (219)
++|....-++..-||..|+|+|+.++...+..+.+..++..+.|+++.+||+|.+-.=.
T Consensus 551 -----------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~ 619 (1064)
T KOG1144|consen 551 -----------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEA 619 (1064)
T ss_pred -----------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHH
Confidence 34555555566669999999999999998889999999999999999999999653111
Q ss_pred --------CCCchHhHHHHHHHHHhcC------------CCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 168 --------GRRPDENIKSFQQLIRENY------------PHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 168 --------~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
...+...+...+.++..+. +..+.++++||.+|.|+.+|+.+|.++.+.+
T Consensus 620 lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 620 LKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 0111122222222222211 1235689999999999999999999876654
No 283
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.46 E-value=1.8e-12 Score=116.20 Aligned_cols=113 Identities=17% Similarity=0.176 Sum_probs=80.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCC---------------CeeEE---eeEEEe---------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKP---------------GKTQL---INHFLV--------------- 83 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~---------------~~t~~---~~~~~~--------------- 83 (219)
....+|+|+|..++|||||+++|+... -....... +.|.. ....+.
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~-g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAA-GIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhc-CCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 457799999999999999999998652 11000111 11111 111110
Q ss_pred -cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccc
Q 027757 84 -NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDK 162 (219)
Q Consensus 84 -~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~ 162 (219)
+..+.++||||+. .+..........+|++|+|+|+.++...+...+++++...++|+++++||+|+
T Consensus 96 ~~~~inliDtPGh~-------------dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~ 162 (843)
T PLN00116 96 NEYLINLIDSPGHV-------------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR 162 (843)
T ss_pred CceEEEEECCCCHH-------------HHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcc
Confidence 2357899999963 23333344445589999999999998888888899998899999999999998
Q ss_pred c
Q 027757 163 M 163 (219)
Q Consensus 163 ~ 163 (219)
.
T Consensus 163 ~ 163 (843)
T PLN00116 163 C 163 (843)
T ss_pred c
Confidence 7
No 284
>PTZ00416 elongation factor 2; Provisional
Probab=99.46 E-value=1.6e-12 Score=116.40 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCC---------------CCeeEEe---eEEEe----------cCeEE
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKK---------------PGKTQLI---NHFLV----------NKSWY 88 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~---------------~~~t~~~---~~~~~----------~~~~~ 88 (219)
....+|+|+|..++|||||+++|+... -...... .+.|... ...+. +..+.
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~-g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKA-GIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhc-CCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 345699999999999999999999742 1110111 1122111 11111 23589
Q ss_pred EEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757 89 IVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 89 liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 163 (219)
++||||+.. +..........+|++|+|+|+.++...+...+++++...++|+++++||+|+.
T Consensus 96 liDtPG~~~-------------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHh-------------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 999999742 22233334445899999999999988888888888888899999999999987
No 285
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.45 E-value=1.7e-12 Score=98.27 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=52.3
Q ss_pred cEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCC
Q 027757 123 VGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLG 202 (219)
Q Consensus 123 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 202 (219)
+..+.|+|+.+..... .........|.++++||+|+.+... ...++..+.+.... ...+++++||+++.|
T Consensus 125 ~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl~~~~~-----~~~~~~~~~l~~~~-~~~~i~~~Sa~~g~g 194 (207)
T TIGR00073 125 HMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADLAEAVG-----FDVEKMKADAKKIN-PEAEIILMSLKTGEG 194 (207)
T ss_pred CeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHccccch-----hhHHHHHHHHHHhC-CCCCEEEEECCCCCC
Confidence 4445677776543221 1222224568899999999975311 12333333343322 347899999999999
Q ss_pred hHHHHHHHHHHH
Q 027757 203 RDELLLHMSQLR 214 (219)
Q Consensus 203 v~el~~~l~~~~ 214 (219)
++++++++.+..
T Consensus 195 v~~l~~~i~~~~ 206 (207)
T TIGR00073 195 LDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHHHhh
Confidence 999999998865
No 286
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.44 E-value=6e-13 Score=101.37 Aligned_cols=152 Identities=22% Similarity=0.297 Sum_probs=89.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccc-----------cccCCCC------------eeEEeeEEE-----------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELA-----------LTSKKPG------------KTQLINHFL----------- 82 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~-----------~~~~~~~------------~t~~~~~~~----------- 82 (219)
...++|.|.|+||+|||||+++|... +.. ..++..+ ...+...+.
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~-~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRE-LRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHH-HHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHH-HhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 34679999999999999999999864 111 1111111 000001110
Q ss_pred --------------ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH--HHHHHh
Q 027757 83 --------------VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL--DCANWL 146 (219)
Q Consensus 83 --------------~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~ 146 (219)
.+..++++.|.|++.. + ....+.+|.+++|+-+.-++.-+-. .++++
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQs--------E--------~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi- 168 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQS--------E--------VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI- 168 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTH--------H--------HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCcc--------H--------HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh-
Confidence 0357899999998622 1 1112338999999998876554432 23333
Q ss_pred ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc----CCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 147 GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN----YPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 147 ~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+-++|+||+|+...+ .-..++...+... ..+.+|++.+||.++.|+++|++.|.++...+
T Consensus 169 -----aDi~vVNKaD~~gA~------~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l 232 (266)
T PF03308_consen 169 -----ADIFVVNKADRPGAD------RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL 232 (266)
T ss_dssp ------SEEEEE--SHHHHH------HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred -----ccEEEEeCCChHHHH------HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 449999999965432 2223333333221 12357999999999999999999999877654
No 287
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.44 E-value=4.3e-12 Score=99.92 Aligned_cols=127 Identities=17% Similarity=0.242 Sum_probs=72.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCC--------CCeeEEee--EEEe---cCeEEEEeCCCCCCCCCCcch-
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKK--------PGKTQLIN--HFLV---NKSWYIVDLPGYGFAKAPDVT- 104 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~--------~~~t~~~~--~~~~---~~~~~liDtpg~~~~~~~~~~- 104 (219)
.++|+|+|.+|+|||||+|.|++.......... ........ .... ...+.++||||++.......-
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 578999999999999999999997433222111 11111111 1111 226899999999754332211
Q ss_pred -------hhhHHHHHHHHhh------ccCCccEEEEEEeCC-CCCCcccHHHHHHhccCCCcEEEEEEcccccccc
Q 027757 105 -------RMDWSSFTKGYFL------NRESLVGVLLLIDAS-VPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVA 166 (219)
Q Consensus 105 -------~~~~~~~~~~~~~------~~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 166 (219)
...|......... ....+|+|+|+++++ .+.+..+.+.++.+.. .+++|.|+.|+|....+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccCHH
Confidence 1111222111111 111368999999987 4577777777777665 58999999999988753
No 288
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.43 E-value=6.6e-12 Score=106.81 Aligned_cols=130 Identities=17% Similarity=0.158 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
....+|+++|.+|+||||++|.|++..........++++..... ...+..+.++||||+.....+.............
T Consensus 116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~ 195 (763)
T TIGR00993 116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK 195 (763)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence 44679999999999999999999997433322223444443222 2234579999999987553322111111121222
Q ss_pred HhhccCCccEEEEEEeCCCCCCc-ccHHHHHHhcc-----CCCcEEEEEEccccccccc
Q 027757 115 YFLNRESLVGVLLLIDASVPPQK-IDLDCANWLGR-----NNIPLTFVFTKCDKMKVAK 167 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~ 167 (219)
++.. ..+|++|+|......... .+...++.+.. .-..+|||+|..|..++++
T Consensus 196 ~Lsk-~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg 253 (763)
T TIGR00993 196 FIKK-NPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDG 253 (763)
T ss_pred HHhc-CCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCC
Confidence 3332 237999999887643332 23334444432 3357899999999887543
No 289
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.43 E-value=5.4e-12 Score=94.70 Aligned_cols=84 Identities=13% Similarity=0.073 Sum_probs=56.1
Q ss_pred ccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 027757 122 LVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGL 201 (219)
Q Consensus 122 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 201 (219)
+|.+|.|+|+.+....... ........-++++||+|+.+.. ..+.+...+.+... +...+++++||++|.
T Consensus 113 ~~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~~~~k~d~~~~~-----~~~~~~~~~~~~~~-~~~~~i~~~Sa~~g~ 182 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPRK----GGPGITRSDLLVINKIDLAPMV-----GADLGVMERDAKKM-RGEKPFIFTNLKTKE 182 (199)
T ss_pred hCcEEEEEEcchhhhhhhh----hHhHhhhccEEEEEhhhccccc-----cccHHHHHHHHHHh-CCCCCEEEEECCCCC
Confidence 4779999999876553211 1112223449999999998531 12333444444433 334799999999999
Q ss_pred ChHHHHHHHHHHHh
Q 027757 202 GRDELLLHMSQLRN 215 (219)
Q Consensus 202 ~v~el~~~l~~~~~ 215 (219)
|++++++++.+.+.
T Consensus 183 gi~el~~~i~~~~~ 196 (199)
T TIGR00101 183 GLDTVIDWIEHYAL 196 (199)
T ss_pred CHHHHHHHHHhhcC
Confidence 99999999987654
No 290
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.43 E-value=7.9e-13 Score=102.06 Aligned_cols=158 Identities=22% Similarity=0.297 Sum_probs=96.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccc------c--ccCCC---C------------eeEEeeEEE----------
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELA------L--TSKKP---G------------KTQLINHFL---------- 82 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~------~--~~~~~---~------------~t~~~~~~~---------- 82 (219)
..+..+|.|.|.||+|||||+..|...- .. . ++|.. + ...+...+.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG 126 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG 126 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence 3567799999999999999999988641 11 0 11111 1 000111110
Q ss_pred ---------------ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc
Q 027757 83 ---------------VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG 147 (219)
Q Consensus 83 ---------------~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~ 147 (219)
.++.++++.|.|.+.+..+ + .+-+|.+++|.=+.-++..+-.+ ..
T Consensus 127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---------I-------~~~aDt~~~v~~pg~GD~~Q~iK----~G 186 (323)
T COG1703 127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---------I-------ANMADTFLVVMIPGAGDDLQGIK----AG 186 (323)
T ss_pred hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---------H-------hhhcceEEEEecCCCCcHHHHHH----hh
Confidence 1347899999998743211 1 11279888888776554432211 11
Q ss_pred cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH---hcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 148 RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR---ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 148 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
-..+.-++|+||.|....+ ....++...++... ...++.+|++.+||..|.|+++|++.+.++.+.+
T Consensus 187 imEiaDi~vINKaD~~~A~---~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 187 IMEIADIIVINKADRKGAE---KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred hhhhhheeeEeccChhhHH---HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 1345569999999965432 11122222233221 2234578999999999999999999999987764
No 291
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.42 E-value=3.5e-12 Score=103.07 Aligned_cols=162 Identities=15% Similarity=0.196 Sum_probs=97.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcc---cc-----------cccCCCC---eeEEeeE-------EEec----CeE
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKE---LA-----------LTSKKPG---KTQLINH-------FLVN----KSW 87 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~---~~-----------~~~~~~~---~t~~~~~-------~~~~----~~~ 87 (219)
.++++-|+++|+.++|||||+|+|.+.-. .+ ..++.+| +|.++.+ .... .++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 36788999999999999999999999721 22 3445556 4444333 2222 589
Q ss_pred EEEeCCCCCCCCCCcchhhhHHH---------------------HHHHHhhccCCccEEEEEE-eCC------CCCCccc
Q 027757 88 YIVDLPGYGFAKAPDVTRMDWSS---------------------FTKGYFLNRESLVGVLLLI-DAS------VPPQKID 139 (219)
Q Consensus 88 ~liDtpg~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~d~vi~v~-d~~------~~~~~~~ 139 (219)
.++||+|+.... .-|.++-+. =++..+.. .+|..|+|. |.+ +.....+
T Consensus 94 rlIDcvG~~v~G--alG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~d--hstIgivVtTDgsi~dI~Re~y~~aE 169 (492)
T TIGR02836 94 RLVDCVGYTVKG--ALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQE--HSTIGVVVTTDGTITDIPREDYVEAE 169 (492)
T ss_pred EEEECCCcccCC--CccceeccccccccCCcccccCchhhhhhhhHHHHHHh--cCcEEEEEEcCCCccccccccchHHH
Confidence 999999985321 111111111 02222221 268788888 775 2334445
Q ss_pred HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757 140 LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 140 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
.+....+++.++|+++|+||+|-... ...++.+.+...++ .+++.+|+.+ -.-+++.+.+.+
T Consensus 170 e~~i~eLk~~~kPfiivlN~~dp~~~--------et~~l~~~l~eky~--vpvl~v~c~~-l~~~DI~~il~~ 231 (492)
T TIGR02836 170 ERVIEELKELNKPFIILLNSTHPYHP--------ETEALRQELEEKYD--VPVLAMDVES-MRESDILSVLEE 231 (492)
T ss_pred HHHHHHHHhcCCCEEEEEECcCCCCc--------hhHHHHHHHHHHhC--CceEEEEHHH-cCHHHHHHHHHH
Confidence 67888888999999999999994322 12233333333333 5777777654 223344443333
No 292
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.42 E-value=5.3e-12 Score=111.87 Aligned_cols=115 Identities=14% Similarity=0.124 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccc-c-cccC------------CCCeeEEe---e-EEE---ecCeEEEEeCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKEL-A-LTSK------------KPGKTQLI---N-HFL---VNKSWYIVDLPGY 95 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~-~-~~~~------------~~~~t~~~---~-~~~---~~~~~~liDtpg~ 95 (219)
.....|+++|..++|||||+++|+...-. . .... ..+.|... . .+. .+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 34668999999999999999999864200 0 0000 00111111 1 111 1346899999997
Q ss_pred CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
... .......++. +|++|+|+|+..+.......+++.+...++|.++++||+|+..
T Consensus 98 ~df----------~~~~~~~l~~---~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDF----------GGDVTRAMRA---VDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI 153 (731)
T ss_pred cCh----------HHHHHHHHHh---cCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc
Confidence 532 1222333344 8999999999998877777777776667789999999999763
No 293
>PTZ00258 GTP-binding protein; Provisional
Probab=99.42 E-value=1.3e-11 Score=100.69 Aligned_cols=88 Identities=22% Similarity=0.261 Sum_probs=63.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--------------------cCeEEEEeCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--------------------NKSWYIVDLPGYG 96 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~liDtpg~~ 96 (219)
....+|+|+|.||+|||||+|+|++.. ....+.+++|........ +.++.++||||+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 445799999999999999999998863 677888888876543322 1248999999986
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS 132 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~ 132 (219)
..... + ..+...++...+.+|++++|+|+.
T Consensus 97 ~ga~~--g----~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 97 KGASE--G----EGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCCcc--h----hHHHHHHHHHHHHCCEEEEEEeCC
Confidence 33221 1 223345555566699999999985
No 294
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=2.1e-12 Score=100.28 Aligned_cols=161 Identities=18% Similarity=0.175 Sum_probs=105.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccccccc--------------CCC-----CeeE---E--e-------eEEEecC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTS--------------KKP-----GKTQ---L--I-------NHFLVNK 85 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~--------------~~~-----~~t~---~--~-------~~~~~~~ 85 (219)
....+|..+|....|||||..+|.|-- -...+ ... .|.. + . .....-.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvw-T~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R 86 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVW-TDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR 86 (415)
T ss_pred CcceEeeeeeecccchhhheehhhcee-eechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence 346789999999999999999999862 00000 000 0000 0 0 0001123
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccC-CCcEEEEEEccccc
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRN-NIPLTFVFTKCDKM 163 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~-~~p~iiv~nK~D~~ 163 (219)
.+.|+|.||+ +-+....+.++.-.|+.++|++++++. ..+..+.+-.+.-. -+.+++|=||+|+.
T Consensus 87 ~VSfVDaPGH-------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV 153 (415)
T COG5257 87 RVSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV 153 (415)
T ss_pred EEEEeeCCch-------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee
Confidence 6789999996 345566777777789999999999742 22223333333322 35789999999998
Q ss_pred ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
..+. ..+.+++..+-+.-...+..|++++||..+.|++-|+++|.+..
T Consensus 154 ~~E~---AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I 201 (415)
T COG5257 154 SRER---ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI 201 (415)
T ss_pred cHHH---HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence 7532 23444444444444555678999999999999999999998754
No 295
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.41 E-value=2.1e-12 Score=114.11 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=77.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc-----------cccccC---CCCeeEEee-------EEEecCeEEEEeCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKE-----------LALTSK---KPGKTQLIN-------HFLVNKSWYIVDLPGYG 96 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~-----------~~~~~~---~~~~t~~~~-------~~~~~~~~~liDtpg~~ 96 (219)
...+|+++|..++|||||+++|+...- .....+ ..+.|.... ..+.+..+.++||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 467999999999999999999985310 001110 112222111 11224478999999975
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
.. .......++. +|++|+|+|+.++.......+++.+...++|.++++||+|....
T Consensus 98 ~f----------~~~~~~al~~---aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 98 DF----------GGDVTRAMRA---VDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLIN 153 (720)
T ss_pred cc----------HHHHHHHHHh---cCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccc
Confidence 32 2223344455 89999999999887777777777776778899999999998643
No 296
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.41 E-value=6.8e-13 Score=96.50 Aligned_cols=163 Identities=15% Similarity=0.078 Sum_probs=90.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc----ccccccCCCCeeEEeeE-EE-ecCeEEEEeCC-CCCCCCCCcchhhhHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKK----ELALTSKKPGKTQLINH-FL-VNKSWYIVDLP-GYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~----~~~~~~~~~~~t~~~~~-~~-~~~~~~liDtp-g~~~~~~~~~~~~~~~~~~ 112 (219)
++|.++|++|||||+|+.+++..- ..+.......+..+... .. .+.++.-+.|. |+ +..........+.+.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~C--H~da~m~~~ai~~l~ 91 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGC--HLDASMNLEAIEELV 91 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCcc--CCcHHHHHHHHHHHh
Confidence 699999999999999999988751 11112222222111100 01 23345555666 33 111111222222222
Q ss_pred HHHhh----ccC------------Ccc-EEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhH
Q 027757 113 KGYFL----NRE------------SLV-GVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENI 175 (219)
Q Consensus 113 ~~~~~----~~~------------~~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 175 (219)
..+-. -.+ -.| .-|+|+|+++++.-..+.. ..+. ..-++|+||.|+.+.-++ ++
T Consensus 92 ~~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~K~g-P~i~---~aDllVInK~DLa~~v~~-----dl 162 (202)
T COG0378 92 LDFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGG-PGIF---KADLLVINKTDLAPYVGA-----DL 162 (202)
T ss_pred hcCCcCCEEEEecCcceecccCcchhhceEEEEEECCCCCCCcccCC-Ccee---EeeEEEEehHHhHHHhCc-----cH
Confidence 21100 000 013 7789999988665432211 1111 145999999999886433 34
Q ss_pred HHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 176 KSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+-+.+.... .++..+++++|.++|.|++++++|+...+
T Consensus 163 evm~~da~~-~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 163 EVMARDAKE-VNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHHHHHHH-hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 444444443 23447999999999999999999998754
No 297
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.41 E-value=1.5e-12 Score=100.26 Aligned_cols=94 Identities=22% Similarity=0.205 Sum_probs=49.5
Q ss_pred ccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEccccccccc--CCCchHh-----------HHHHHHHHH
Q 027757 122 LVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAK--GRRPDEN-----------IKSFQQLIR 183 (219)
Q Consensus 122 ~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~-----------~~~~~~~~~ 183 (219)
.-++++++|+......... -....+-+.+.|.+.|+||+|+..... ....-.+ ...+.+.+.
T Consensus 123 ~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~ 202 (238)
T PF03029_consen 123 RLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIA 202 (238)
T ss_dssp --EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHH
T ss_pred ceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 3478999999876553322 111222347899999999999986210 0000000 122222222
Q ss_pred h---cCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 184 E---NYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 184 ~---~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
. .+....+++++|+.++.|+.+++..+.++..
T Consensus 203 ~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~ 237 (238)
T PF03029_consen 203 ELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ 237 (238)
T ss_dssp HHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred HHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence 2 2233348999999999999999999988764
No 298
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.41 E-value=2.3e-12 Score=94.28 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=45.0
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHH-HhccCCCcEEEEEEcc
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN-WLGRNNIPLTFVFTKC 160 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~ 160 (219)
.+.++||||+..... .. ..+...|+.. +|++|||+++.+..+..+...+. ........+++|+||.
T Consensus 102 ~~~lvDtPG~~~~~~-~~-----~~~~~~~~~~---~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNS-EH-----TEITEEYLPK---ADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHT-TT-----SHHHHHHHST---TEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ceEEEeCCccccchh-hh-----HHHHHHhhcc---CCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 579999999864211 11 2556666655 89999999999977766544443 4444566699999985
No 299
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.40 E-value=4e-12 Score=99.96 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=98.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccc---------cccc----------------------CCCCeeEEeeEE---Ee
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKEL---------ALTS----------------------KKPGKTQLINHF---LV 83 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~---------~~~~----------------------~~~~~t~~~~~~---~~ 83 (219)
..+|++-+|...-|||||+-+|+..... ...+ ..-|.|.+..+. +.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4679999999999999999999965300 0111 122455544322 23
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEcccc
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKCDK 162 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D~ 162 (219)
..+|++.||||+. .+++....++..||+.|+++|+..+.-.+.++......-.+ ..+++.+||+||
T Consensus 85 KRkFIiADTPGHe-------------QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL 151 (431)
T COG2895 85 KRKFIIADTPGHE-------------QYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL 151 (431)
T ss_pred cceEEEecCCcHH-------------HHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence 4589999999962 33344445666799999999999877666654433333334 358999999999
Q ss_pred cccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChH
Q 027757 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRD 204 (219)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 204 (219)
.+..+ +.+.+...++..-..........++++||..|+|+-
T Consensus 152 vdy~e-~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 152 VDYSE-EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cccCH-HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 98642 222222223222222233345689999999999873
No 300
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.38 E-value=7e-12 Score=100.08 Aligned_cols=112 Identities=21% Similarity=0.165 Sum_probs=62.6
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 163 (219)
+..++++||+|.+.... .... .+|.++++.+.. +..+...... .-.++|.++|+||+|+.
T Consensus 126 g~D~viidT~G~~~~e~-------------~i~~---~aD~i~vv~~~~---~~~el~~~~~-~l~~~~~ivv~NK~Dl~ 185 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEV-------------DIAN---MADTFVVVTIPG---TGDDLQGIKA-GLMEIADIYVVNKADGE 185 (300)
T ss_pred CCCEEEEeCCCCchhhh-------------HHHH---hhceEEEEecCC---ccHHHHHHHH-HHhhhccEEEEEccccc
Confidence 34789999999752211 0111 268777775433 2222211111 11468889999999987
Q ss_pred ccccCCCchHhHHHHHHHHHhc-CCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 164 KVAKGRRPDENIKSFQQLIREN-YPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..................+... .....+++++||+++.|++++++++.+...
T Consensus 186 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 186 GATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred chhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 6421000000000001111111 122357999999999999999999988654
No 301
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.4e-11 Score=99.36 Aligned_cols=113 Identities=20% Similarity=0.225 Sum_probs=77.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc--------cc------------ccccCCCCe--eEEeeEEE-ecCeEEEEeCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKK--------EL------------ALTSKKPGK--TQLINHFL-VNKSWYIVDLPGY 95 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~--------~~------------~~~~~~~~~--t~~~~~~~-~~~~~~liDtpg~ 95 (219)
+...+|+-.|.||||||.+.|+--. .. +......|. +.+...+. .+..+.++||||+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 4568999999999999999887210 00 011111222 22222222 2346899999998
Q ss_pred CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
.+.. +..| |-.-.+|.+|+|+|+..+...+.+++.+.-+..++|++-.+||+|...
T Consensus 92 eDFS-----EDTY--------RtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 92 EDFS-----EDTY--------RTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred cccc-----hhHH--------HHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeecccccc
Confidence 5432 2223 333337999999999999998888888877778999999999999754
No 302
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.34 E-value=3.2e-11 Score=95.64 Aligned_cols=133 Identities=18% Similarity=0.236 Sum_probs=84.5
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccc--cCCCC----eeEEe----eEEEec---CeEEEEeCCCCCCCCC
Q 027757 34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALT--SKKPG----KTQLI----NHFLVN---KSWYIVDLPGYGFAKA 100 (219)
Q Consensus 34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~--~~~~~----~t~~~----~~~~~~---~~~~liDtpg~~~~~~ 100 (219)
...+..+.|.++|++|.|||||+|.|++....... .+..+ .+..+ .....+ ..+.++||||++....
T Consensus 18 ~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id 97 (373)
T COG5019 18 SKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID 97 (373)
T ss_pred HhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc
Confidence 34467899999999999999999999997311111 11111 11111 111112 2689999999987655
Q ss_pred Ccchh----hhHHHHHHHHhhccC-----------CccEEEEEEeCC-CCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 101 PDVTR----MDWSSFTKGYFLNRE-----------SLVGVLLLIDAS-VPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 101 ~~~~~----~~~~~~~~~~~~~~~-----------~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
....- ....+..+.|+...+ .+|+|+|.+.++ ++.+..+.+.++.+.. .+.+|-|+.|.|...
T Consensus 98 Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT 176 (373)
T COG5019 98 NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLT 176 (373)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCC
Confidence 43321 111222334433221 268999999987 4677777777776665 689999999999987
Q ss_pred ccc
Q 027757 165 VAK 167 (219)
Q Consensus 165 ~~~ 167 (219)
.++
T Consensus 177 ~~E 179 (373)
T COG5019 177 DDE 179 (373)
T ss_pred HHH
Confidence 643
No 303
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.34 E-value=1.8e-11 Score=95.76 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=46.0
Q ss_pred CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 149 NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 149 ~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
...+-++|+||+|+.+. ...+++.+.+.+.... ...+++.+|+++|.|+++|++||.+..
T Consensus 229 f~~ADIVVLNKiDLl~~-----~~~dle~~~~~lr~ln-p~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 229 FAAASLMLLNKVDLLPY-----LNFDVEKCIACAREVN-PEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hhcCcEEEEEhHHcCcc-----cHHHHHHHHHHHHhhC-CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45677999999999753 1235666666666544 347899999999999999999998743
No 304
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.33 E-value=6.1e-12 Score=97.90 Aligned_cols=158 Identities=20% Similarity=0.175 Sum_probs=107.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCccccccc--CCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTS--KKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
....+-|.++|.+|+|||||+++|++....+... .+...|.+....+.++.+.+.||-|+. +..+......|++..+
T Consensus 175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFi-sdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFI-SDLPIQLVAAFQATLE 253 (410)
T ss_pred cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhh-hhCcHHHHHHHHHHHH
Confidence 4556899999999999999999999753222211 122344455566667789999999975 4445555666666655
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhccCCCc-------EEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLGRNNIP-------LTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~~~p-------~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
... .+|+++-|.|++.|...... .++..+.+-++| ++=|-||+|..+.. .++-
T Consensus 254 eVa----eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~--------~e~E------- 314 (410)
T KOG0410|consen 254 EVA----EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE--------VEEE------- 314 (410)
T ss_pred HHh----hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc--------Cccc-------
Confidence 533 36999999999999876664 344455544433 55567787765431 1100
Q ss_pred CCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
..-.+.+||++|.|++++++.+...+.+
T Consensus 315 ---~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 315 ---KNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ---cCCccccccccCccHHHHHHHHHHHhhh
Confidence 0124789999999999999999876654
No 305
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=5.1e-12 Score=89.00 Aligned_cols=156 Identities=21% Similarity=0.198 Sum_probs=104.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
..-|++++|--|||||||++.|-.. ......|+...|.. ...+ +-.++.+|..|+... +..++.|+
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE--~l~Ig~m~ftt~DLGGH~qA----------rr~wkdyf 85 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSE--ELSIGGMTFTTFDLGGHLQA----------RRVWKDYF 85 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChH--HheecCceEEEEccccHHHH----------HHHHHHHH
Confidence 4568999999999999999999886 56666666553332 2233 337889999986311 44567777
Q ss_pred hccCCccEEEEEEeCCCCCCcccH----HHH-HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC-----
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDL----DCA-NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY----- 186 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~----~~~-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----- 186 (219)
.. +|++++++|+.+...+.+- +.+ ....-.+.|+++++||+|...+. .++++.......+...
T Consensus 86 ~~---v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~----se~~l~~~l~l~~~t~~~~~v 158 (193)
T KOG0077|consen 86 PQ---VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA----SEDELRFHLGLSNFTTGKGKV 158 (193)
T ss_pred hh---hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc----cHHHHHHHHHHHHHhcccccc
Confidence 67 8999999999987665542 111 11112689999999999988653 2233332222222211
Q ss_pred ------CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 187 ------PHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 187 ------~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
..+..+|.||...+.|.-+-|.|+...
T Consensus 159 ~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 159 NLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred cccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 113457899999999988888887654
No 306
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=4e-12 Score=91.47 Aligned_cols=152 Identities=13% Similarity=0.204 Sum_probs=107.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++++++|..|.||||++++.+...+-..+.++.+...+......+. ++..|||.| ++.+--..+.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtag----------qEk~gglrdg 78 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAG----------QEKKGGLRDG 78 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccc----------ceeecccccc
Confidence 468999999999999999999988877777888888777765444333 456667666 4444445566
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
|+.. ....|+++|++...+.... .+|-+ ..++|+++++||.|..... . ....+.-.....
T Consensus 79 yyI~---~qcAiimFdVtsr~t~~n~--~rwhrd~~rv~~NiPiv~cGNKvDi~~r~--------~--k~k~v~~~rkkn 143 (216)
T KOG0096|consen 79 YYIQ---GQCAIIMFDVTSRFTYKNV--PRWHRDLVRVRENIPIVLCGNKVDIKARK--------V--KAKPVSFHRKKN 143 (216)
T ss_pred cEEe---cceeEEEeeeeehhhhhcc--hHHHHHHHHHhcCCCeeeeccceeccccc--------c--ccccceeeeccc
Confidence 6666 4567999999976655442 22222 2579999999999976542 0 111122222344
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+.++++||++..|.+.-|.|+.+..
T Consensus 144 l~y~~iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 144 LQYYEISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred ceeEEeecccccccccchHHHhhhh
Confidence 7899999999999999999998754
No 307
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.27 E-value=1.6e-11 Score=88.98 Aligned_cols=57 Identities=33% Similarity=0.556 Sum_probs=50.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY 95 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~ 95 (219)
...+|+++|.+|+|||||+|+|.+. ....+.+.+++|+....+..+..+.++||||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 3568999999999999999999997 57788899999998887777778999999995
No 308
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.3e-10 Score=92.84 Aligned_cols=134 Identities=22% Similarity=0.246 Sum_probs=84.8
Q ss_pred CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccccc-----ccCCCCeeEEeeEE--E-----ecCeEEEEeCCCCCCCC
Q 027757 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELAL-----TSKKPGKTQLINHF--L-----VNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 32 ~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~-----~~~~~~~t~~~~~~--~-----~~~~~~liDtpg~~~~~ 99 (219)
+...++..+.+.++|++|.|||||+|.|+....... ....+..+..+... . ..-.++++||||+++..
T Consensus 14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 344556789999999999999999999998732221 11111111221111 1 12268999999997654
Q ss_pred CCcch----hhhHHHHHHHHhhccC----------CccEEEEEEeCCC-CCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 100 APDVT----RMDWSSFTKGYFLNRE----------SLVGVLLLIDASV-PPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 100 ~~~~~----~~~~~~~~~~~~~~~~----------~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
..... -....+-.+.|+.... .+|+|+|.+.++. +....+.+.++.+.. ++++|-|+-|.|...
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT 172 (366)
T KOG2655|consen 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLT 172 (366)
T ss_pred cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCC
Confidence 43221 1112233344443221 3689999999874 477777766666664 789999999999887
Q ss_pred cc
Q 027757 165 VA 166 (219)
Q Consensus 165 ~~ 166 (219)
.+
T Consensus 173 ~~ 174 (366)
T KOG2655|consen 173 KD 174 (366)
T ss_pred HH
Confidence 63
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.9e-11 Score=103.25 Aligned_cols=117 Identities=15% Similarity=0.154 Sum_probs=84.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCc-ccc---ccc------------CCCCeeEE---eeEEEec-CeEEEEeCCCC
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKK-ELA---LTS------------KKPGKTQL---INHFLVN-KSWYIVDLPGY 95 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~-~~~---~~~------------~~~~~t~~---~~~~~~~-~~~~liDtpg~ 95 (219)
.....+|.|+|+..+|||||..+++... ... .+. ...|.|.. +...+.+ ..+.+|||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 3556789999999999999999998542 000 010 11123322 2334443 78999999997
Q ss_pred CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
.++. ....+..+.+|++|+|+|+..+...+...+++++.+.++|.++++||+|....
T Consensus 87 VDFt-------------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFT-------------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccH-------------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc
Confidence 5331 22223333389999999999999999999999999999999999999998865
No 310
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.5e-10 Score=96.40 Aligned_cols=152 Identities=17% Similarity=0.185 Sum_probs=98.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCc-----------------------------ccccccCCCCeeEEeeEEEec--
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKK-----------------------------ELALTSKKPGKTQLINHFLVN-- 84 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~-----------------------------~~~~~~~~~~~t~~~~~~~~~-- 84 (219)
....+.++++|...+|||||+.+++..- +.....+..|.|.++...+.+
T Consensus 174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~ 253 (603)
T KOG0458|consen 174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK 253 (603)
T ss_pred CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence 3457889999999999999999988531 011223344566555444433
Q ss_pred -CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc-------HHHHHHhccCC-CcEEE
Q 027757 85 -KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-------LDCANWLGRNN-IPLTF 155 (219)
Q Consensus 85 -~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-------~~~~~~~~~~~-~p~ii 155 (219)
..++++|+||+..+. ...+.++..||+.|+|+|++....+.. .+....++..+ ..+++
T Consensus 254 ~~~~tliDaPGhkdFi-------------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qliv 320 (603)
T KOG0458|consen 254 SKIVTLIDAPGHKDFI-------------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIV 320 (603)
T ss_pred ceeEEEecCCCccccc-------------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEE
Confidence 368999999964332 333445556899999999996433322 23333333333 35899
Q ss_pred EEEcccccccccCCCchHhHHHHHHHHHhcC-------CCCCCeEEeecCCCCChHH
Q 027757 156 VFTKCDKMKVAKGRRPDENIKSFQQLIRENY-------PHHPPWIMTSSVTGLGRDE 205 (219)
Q Consensus 156 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~e 205 (219)
++||+|+.+-. ++.++++...+..++ ...+.++++|+.+|.|+-.
T Consensus 321 aiNKmD~V~Ws-----q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 321 AINKMDLVSWS-----QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred EeecccccCcc-----HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 99999987642 345555555554433 2245899999999998743
No 311
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.24 E-value=2.1e-11 Score=85.01 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=97.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
-.+||.++|++..|||||+-..++..+......+.|....-......+ .+.+||..| ++++..+...
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG----------~~~~~n~lPi 88 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGG----------QREFINMLPI 88 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCC----------cHhhhccCce
Confidence 358999999999999999999999865555666666554433333332 356667666 3333333333
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
. .+.+-+++|++|.+++.+... +.+|..+ ..+| ++|++|.|+.-.-.+ ...+.+....+.+....
T Consensus 89 a---c~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~-e~Q~~I~~qar~YAk~m-- 159 (205)
T KOG1673|consen 89 A---CKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPP-ELQETISRQARKYAKVM-- 159 (205)
T ss_pred e---ecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccce-EEeccchHhhhcCCH-HHHHHHHHHHHHHHHHh--
Confidence 2 233678999999998877643 3455543 2244 678999996421111 11122222222222222
Q ss_pred CCCeEEeecCCCCChHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMS 211 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~ 211 (219)
..+.|++|+....|++.+|+.+.
T Consensus 160 nAsL~F~Sts~sINv~KIFK~vl 182 (205)
T KOG1673|consen 160 NASLFFCSTSHSINVQKIFKIVL 182 (205)
T ss_pred CCcEEEeeccccccHHHHHHHHH
Confidence 26889999999999999998764
No 312
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.24 E-value=2.8e-11 Score=88.74 Aligned_cols=58 Identities=33% Similarity=0.487 Sum_probs=51.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY 95 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~ 95 (219)
....+++++|.+|+|||||+|+|++. ....+++.+++|+....+..+..+.++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 34579999999999999999999997 56788899999998888877788999999995
No 313
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.22 E-value=2.6e-10 Score=82.51 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=69.3
Q ss_pred HHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 108 WSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 108 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
|+.+.+...+. +|++++|+|++++....+..+..++...++|+++|+||+|+.+. .....+. .+...
T Consensus 2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-------~~~~~~~-~~~~~-- 68 (156)
T cd01859 2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK-------EVLEKWK-SIKES-- 68 (156)
T ss_pred HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH-------HHHHHHH-HHHHh--
Confidence 45666777766 89999999999877666666666666668999999999998643 1222222 12111
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
...+++++||+++.|++++++.+.+.+.
T Consensus 69 ~~~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 69 EGIPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence 1257899999999999999999987653
No 314
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=7.9e-11 Score=88.19 Aligned_cols=139 Identities=21% Similarity=0.330 Sum_probs=87.6
Q ss_pred eccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccccccc-------CCCCeeEE--eeEEE----ecCeEEEEeC
Q 027757 26 KSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTS-------KKPGKTQL--INHFL----VNKSWYIVDL 92 (219)
Q Consensus 26 ~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-------~~~~~t~~--~~~~~----~~~~~~liDt 92 (219)
.+.-+.+.+..+..+.|.++|++|.|||||+|.++... ....+ +.+.++.. +.+.. +.-++.++||
T Consensus 33 ~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDT 111 (336)
T KOG1547|consen 33 IEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDT 111 (336)
T ss_pred HHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecC
Confidence 33445566777889999999999999999999998763 22211 22222221 12221 2337899999
Q ss_pred CCCCCCCCCcc--------hhhhHHHHHHHHhhccC-------CccEEEEEEeCCC-CCCcccHHHHHHhccCCCcEEEE
Q 027757 93 PGYGFAKAPDV--------TRMDWSSFTKGYFLNRE-------SLVGVLLLIDASV-PPQKIDLDCANWLGRNNIPLTFV 156 (219)
Q Consensus 93 pg~~~~~~~~~--------~~~~~~~~~~~~~~~~~-------~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv 156 (219)
||++++.-... ..+.|+.+.+..+...+ .+++|+|.+.++- ..+..+.++++.+.+ -+.++-|
T Consensus 112 PGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPV 190 (336)
T KOG1547|consen 112 PGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPV 190 (336)
T ss_pred CCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeee
Confidence 99986543322 12333333333333211 2579999998873 456666677777665 4678999
Q ss_pred EEcccccccc
Q 027757 157 FTKCDKMKVA 166 (219)
Q Consensus 157 ~nK~D~~~~~ 166 (219)
+-|.|-+.-+
T Consensus 191 IakaDtlTle 200 (336)
T KOG1547|consen 191 IAKADTLTLE 200 (336)
T ss_pred EeecccccHH
Confidence 9999977643
No 315
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=9.8e-10 Score=87.23 Aligned_cols=127 Identities=19% Similarity=0.228 Sum_probs=88.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEEe-------------------------------
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLV------------------------------- 83 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~------------------------------- 83 (219)
-...+-|+++|+-..|||||++.|+...+.. .+.+.+++.+.+...+.
T Consensus 55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln 134 (532)
T KOG1954|consen 55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN 134 (532)
T ss_pred cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence 3557899999999999999999999986543 34445544443322111
Q ss_pred -------c----CeEEEEeCCCCCCCC-CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-CCcccHHHHHHhccCC
Q 027757 84 -------N----KSWYIVDLPGYGFAK-APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGRNN 150 (219)
Q Consensus 84 -------~----~~~~liDtpg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~ 150 (219)
. ..+.++||||+.... ......-.|......|... +|.|++++|+..- .+....+++..++...
T Consensus 135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR---~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E 211 (532)
T KOG1954|consen 135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFKRVIDALKGHE 211 (532)
T ss_pred HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHh---ccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence 0 146999999975422 2122223445556666666 8999999999864 3444457888888888
Q ss_pred CcEEEEEEccccccc
Q 027757 151 IPLTFVFTKCDKMKV 165 (219)
Q Consensus 151 ~p~iiv~nK~D~~~~ 165 (219)
-.+-+|+||.|..+.
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred ceeEEEeccccccCH
Confidence 889999999999875
No 316
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.17 E-value=2e-10 Score=92.85 Aligned_cols=85 Identities=24% Similarity=0.258 Sum_probs=62.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEec------------------CeEEEEeCCCCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLVN------------------KSWYIVDLPGYGFAK 99 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~liDtpg~~~~~ 99 (219)
++|+|+|.||+|||||+|+|++.. ....+.+++|.++. ..... ..+.++|+||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 689999999999999999999974 67777888876543 22221 248999999986322
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS 132 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~ 132 (219)
.. + +.+...++...+.+|++++|+|+.
T Consensus 81 ~~--g----~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 SK--G----EGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred Ch--H----HHHHHHHHHHHHhCCEEEEEEeCC
Confidence 11 1 234456666667799999999986
No 317
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=4.9e-10 Score=86.41 Aligned_cols=148 Identities=17% Similarity=0.214 Sum_probs=96.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc--------------ccccccCCCCeeEEe---eEEEecCeEEEEeCCCCCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKK--------------ELALTSKKPGKTQLI---NHFLVNKSWYIVDLPGYGFAKA 100 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~--------------~~~~~~~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~~ 100 (219)
...+|..+|....|||||.-+++..- +.+......+.|... .+...+..+-.+|+||+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH----- 85 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH----- 85 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh-----
Confidence 46789999999999999999888541 011222333444433 33344567899999996
Q ss_pred CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccC-CCchHhHHHH
Q 027757 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKG-RRPDENIKSF 178 (219)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~-~~~~~~~~~~ 178 (219)
..+.+..+.++.++|+.|+|+.+.++...+..+.+-..++...| +++++||+|+.++++. +..+.+..++
T Consensus 86 --------aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreL 157 (394)
T COG0050 86 --------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVREL 157 (394)
T ss_pred --------HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence 34445555566668999999999998888887777777777775 7788999999874321 2222222222
Q ss_pred HHHHHhcCCCCCCeEEeecCC
Q 027757 179 QQLIRENYPHHPPWIMTSSVT 199 (219)
Q Consensus 179 ~~~~~~~~~~~~~~~~~Sa~~ 199 (219)
+..+. +-+...|++.-|+..
T Consensus 158 Ls~y~-f~gd~~Pii~gSal~ 177 (394)
T COG0050 158 LSEYG-FPGDDTPIIRGSALK 177 (394)
T ss_pred HHHcC-CCCCCcceeechhhh
Confidence 22221 112357787777765
No 318
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.14 E-value=1.7e-10 Score=90.30 Aligned_cols=83 Identities=23% Similarity=0.253 Sum_probs=58.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEecC------------------eEEEEeCCCCCCCCCC
Q 027757 42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVNK------------------SWYIVDLPGYGFAKAP 101 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~------------------~~~liDtpg~~~~~~~ 101 (219)
|+|+|.+|+|||||+|+|++.. ....+.+++|..... ..... .+.++|+||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~--~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC--CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 5799999999999999999974 367777887765432 22221 4899999998633221
Q ss_pred cchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDAS 132 (219)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~ 132 (219)
+ +.+...++...+.+|++++|+|+.
T Consensus 79 --~----~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 79 --G----EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred --h----hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 234445566666699999999975
No 319
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.13 E-value=1.1e-10 Score=95.49 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=81.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcc----cccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKE----LALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+++++|.+|+|||||+|+|++... ...+++.+++|.....+..+..+.++||||+.....-. .....-...+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~~~~---~~l~~~~l~~ 231 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSHQMA---HYLDKKDLKY 231 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChhHhh---hhcCHHHHhh
Confidence 5899999999999999999998532 34678889999998888877778899999986431100 0000111112
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
+...+......+.++..+......+..+.++...+..+.+..++.+...
T Consensus 232 ~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 232 ITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred cCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeE
Confidence 3334446778888888765444444444555555667777777776543
No 320
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.12 E-value=2.1e-10 Score=81.57 Aligned_cols=55 Identities=42% Similarity=0.593 Sum_probs=47.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYG 96 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~ 96 (219)
+++++|.+|+|||||+|++++.. ....+..++++++...+..+..+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKK-KVSVSATPGKTKHFQTIFLTPTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-ceeeCCCCCcccceEEEEeCCCEEEEECCCcC
Confidence 89999999999999999999974 44677778888888777777789999999974
No 321
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.10 E-value=8.2e-10 Score=79.95 Aligned_cols=87 Identities=21% Similarity=0.303 Sum_probs=64.9
Q ss_pred cCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 119 RESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 119 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
.+.+|++++|+|+.++....+..+.+.+.. .++|+++|+||+|+.+. +....+...+...+. ..++.+|
T Consensus 6 l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~-------~~~~~~~~~~~~~~~--~~~~~iS 76 (157)
T cd01858 6 IDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT-------WVTARWVKILSKEYP--TIAFHAS 76 (157)
T ss_pred hhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH-------HHHHHHHHHHhcCCc--EEEEEee
Confidence 344899999999999866666666666654 34899999999999753 334556666654332 2258899
Q ss_pred cCCCCChHHHHHHHHHHH
Q 027757 197 SVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 197 a~~~~~v~el~~~l~~~~ 214 (219)
|+.+.|++++.+++.+..
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999998764
No 322
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.09 E-value=2.5e-09 Score=79.84 Aligned_cols=98 Identities=18% Similarity=0.102 Sum_probs=64.9
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHH--HhcC
Q 027757 109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI--RENY 186 (219)
Q Consensus 109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~ 186 (219)
.++...++.. +|++++|+|++++.......+ +....++|+++|+||+|+.+.+ ...+..+.+...+ ....
T Consensus 25 ~~~l~~~~~~---ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~ 96 (190)
T cd01855 25 LNLLSSISPK---KALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKD---KNLVRIKNWLRAKAAAGLG 96 (190)
T ss_pred HHHHHhcccC---CcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCC---CCHHHHHHHHHHHHHhhcC
Confidence 5566666666 899999999998654433333 2233578999999999997532 1222333333111 1111
Q ss_pred CCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 187 PHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
....+++++||+++.|++++++++.+.+
T Consensus 97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 97 LKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 1123689999999999999999998865
No 323
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.07 E-value=3.2e-09 Score=80.31 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=62.4
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE--eeEEEec-CeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL--INHFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSF 111 (219)
Q Consensus 35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~--~~~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~ 111 (219)
.+.+.-||+++|.|.+|||||+..++... ........+|.. +.....+ ..+.++|.||+........|+-
T Consensus 58 ~KsGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG----- 130 (364)
T KOG1486|consen 58 LKSGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG----- 130 (364)
T ss_pred eccCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCC-----
Confidence 34567899999999999999999999863 444444445443 3333333 3799999999865433222211
Q ss_pred HHHHhhccCCccEEEEEEeCCCCC
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPP 135 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~ 135 (219)
.....-++.+|++++|+|++...
T Consensus 131 -RQviavArtaDlilMvLDatk~e 153 (364)
T KOG1486|consen 131 -RQVIAVARTADLILMVLDATKSE 153 (364)
T ss_pred -ceEEEEeecccEEEEEecCCcch
Confidence 22333455689999999999643
No 324
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.07 E-value=8.8e-12 Score=89.47 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=105.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCC-CCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG-YGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg-~~~~~~~~~~~~~~~~~~~~~ 115 (219)
....++.|+|..|+|||+++.+.+...+...+..+.+........ -||... +....|+-.||+.+-.+...|
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl-------~wdd~t~vRlqLwdIagQerfg~mtrVy 95 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVL-------QWDDKTIVRLQLWDIAGQERFGNMTRVY 95 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHh-------ccChHHHHHHHHhcchhhhhhcceEEEE
Confidence 456899999999999999999999875555454444433321111 122222 122344455577777788888
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc----------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR----------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~----------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
++. +.+..+|||+++..++... .+|... .-.|+++..||||...... .+.-+....+..
T Consensus 96 yke---a~~~~iVfdvt~s~tfe~~--skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~-----~~~~~~~d~f~k- 164 (229)
T KOG4423|consen 96 YKE---AHGAFIVFDVTRSLTFEPV--SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK-----NEATRQFDNFKK- 164 (229)
T ss_pred ecC---CcceEEEEEccccccccHH--HHHHHhccCcccCCCCCcchheeccchhccChHhh-----hhhHHHHHHHHh-
Confidence 888 8999999999997776542 344442 3368899999999876421 111122222221
Q ss_pred CCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 186 YPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.+...-++++|+|...+++|.-+.+.+..
T Consensus 165 engf~gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 165 ENGFEGWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred ccCccceeeeccccccChhHHHHHHHHHH
Confidence 12235789999999999999999887743
No 325
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.06 E-value=2.5e-10 Score=85.03 Aligned_cols=151 Identities=19% Similarity=0.158 Sum_probs=91.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..||+++|.+|+||||+-..++.+ ..+.....+|-|.++.+... +--+.+||+.|-. ...+..+.+-.+.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-----~fmen~~~~q~d~ 77 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-----EFMENYLSSQEDN 77 (295)
T ss_pred cceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH-----HHHHHHHhhcchh
Confidence 568999999999999999999886 66777777777766655443 3357789988731 0000011111223
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHH----HHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCA----NWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~----~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
-++. ++++++|+|++..+-..+.... +.+.+ +...+++.++|+|+.....++..-.........+.. ..
T Consensus 78 iF~n---V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~--~~ 152 (295)
T KOG3886|consen 78 IFRN---VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSR--PL 152 (295)
T ss_pred hhee---heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcc--cc
Confidence 3334 7899999999986655554322 22222 566799999999998654433222222222222222 22
Q ss_pred CCCeEEeecCCC
Q 027757 189 HPPWIMTSSVTG 200 (219)
Q Consensus 189 ~~~~~~~Sa~~~ 200 (219)
.+.+|++|.-..
T Consensus 153 ~~~~f~TsiwDe 164 (295)
T KOG3886|consen 153 ECKCFPTSIWDE 164 (295)
T ss_pred cccccccchhhH
Confidence 356677765543
No 326
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.06 E-value=8.1e-10 Score=87.71 Aligned_cols=62 Identities=35% Similarity=0.497 Sum_probs=53.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~ 99 (219)
...++++++|.+|+|||||+|+|.+. ....+.+.+++|+....+..+..+.++||||+....
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~ 180 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK 180 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence 34578999999999999999999997 466788899999998888888889999999986443
No 327
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.05 E-value=5.5e-10 Score=89.80 Aligned_cols=60 Identities=38% Similarity=0.594 Sum_probs=54.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~ 99 (219)
..+++++|-+|+|||||||+|.++ ....+++.+|+|.....+.....+.++||||+....
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~ 191 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPK 191 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCCCC
Confidence 478999999999999999999998 578999999999999999999999999999986543
No 328
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.05 E-value=7.1e-10 Score=80.11 Aligned_cols=58 Identities=31% Similarity=0.450 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY 95 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~ 95 (219)
....+++++|.+|+|||||+|++.+. ......+.+++|........+..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 34688999999999999999999997 45567778888888877777778999999995
No 329
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.04 E-value=1.2e-09 Score=87.15 Aligned_cols=166 Identities=22% Similarity=0.151 Sum_probs=105.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccc-c-----------cccCCCCeeEEeeE--EEe-------------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKEL-A-----------LTSKKPGKTQLINH--FLV------------------- 83 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~-~-----------~~~~~~~~t~~~~~--~~~------------------- 83 (219)
.....|+.+|..++|||||+-.|+...-. . ...-..+.+.++.. +-.
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 44678999999999999999888754200 0 00000111111110 000
Q ss_pred -----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEE
Q 027757 84 -----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFT 158 (219)
Q Consensus 84 -----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~n 158 (219)
+.-+.++||.|+. .| -...-.=+- -+..|..++++.++++.+...++.+..+...+.|+++++|
T Consensus 195 vv~~aDklVsfVDtvGHE--pw--------LrTtirGL~-gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvT 263 (527)
T COG5258 195 VVKRADKLVSFVDTVGHE--PW--------LRTTIRGLL-GQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVT 263 (527)
T ss_pred hhhhcccEEEEEecCCcc--HH--------HHHHHHHHh-ccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEE
Confidence 1235788998863 12 111111111 1237999999999999999988888888889999999999
Q ss_pred cccccccccCCCchHhHHHHHHHHHh-------------------cCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 159 KCDKMKVAKGRRPDENIKSFQQLIRE-------------------NYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 159 K~D~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
|+|+.+++-.....+++.++++..+. ....-.|+|.+|+.+|.|++-|.+.+..+
T Consensus 264 K~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L 337 (527)
T COG5258 264 KIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL 337 (527)
T ss_pred ecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence 99998865443334444444443221 11124689999999999998887777654
No 330
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.04 E-value=5.3e-10 Score=83.51 Aligned_cols=57 Identities=37% Similarity=0.520 Sum_probs=47.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcc-------cccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKE-------LALTSKKPGKTQLINHFLVNKSWYIVDLPGY 95 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~-------~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~ 95 (219)
..+++++|.+|+|||||+|+|.+... ....+..+++|+.......+..+.++||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 36899999999999999999998642 2356677899999888888778899999995
No 331
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.02 E-value=1.6e-09 Score=85.51 Aligned_cols=60 Identities=32% Similarity=0.443 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA 98 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~ 98 (219)
...+++++|.+|+|||||+|+|.+. ....+.+.+++|+....+..+..+.++||||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCcccC
Confidence 4578999999999999999999987 46677888999998888877778999999998544
No 332
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.02 E-value=3.9e-09 Score=76.25 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=61.4
Q ss_pred cEEEEEEeCCCCCCcccHHHH-HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 027757 123 VGVLLLIDASVPPQKIDLDCA-NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGL 201 (219)
Q Consensus 123 d~vi~v~d~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 201 (219)
|.+++|+|+.++.+.....+. ..+...++|+++|+||+|+.+. +...++...+.... ..+++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~-------~~~~~~~~~~~~~~--~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK-------EVLRKWLAYLRHSY--PTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH-------HHHHHHHHHHHhhC--CceEEEEeccCCc
Confidence 679999999988776665555 4666678999999999999653 23444444443332 2568999999999
Q ss_pred ChHHHHHHHHHH
Q 027757 202 GRDELLLHMSQL 213 (219)
Q Consensus 202 ~v~el~~~l~~~ 213 (219)
|++++.+.+.+.
T Consensus 72 gi~~L~~~i~~~ 83 (155)
T cd01849 72 GIEKKESAFTKQ 83 (155)
T ss_pred ChhhHHHHHHHH
Confidence 999999988664
No 333
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.1e-08 Score=86.89 Aligned_cols=148 Identities=20% Similarity=0.253 Sum_probs=91.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccccccc-----------C---------CCCe-------e-----------E--
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTS-----------K---------KPGK-------T-----------Q-- 76 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-----------~---------~~~~-------t-----------~-- 76 (219)
...-||+|.|..++||||++|+++..+..+... . +++. + .
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 345799999999999999999999764221100 0 0000 0 0
Q ss_pred ----EeeEEEe-------cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHH
Q 027757 77 ----LINHFLV-------NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANW 145 (219)
Q Consensus 77 ----~~~~~~~-------~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~ 145 (219)
-...++. .+.+.++|.||++...- ..+..+.+... +|++|+|..+.+-.+...+.++..
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se-------~tswid~~cld---aDVfVlV~NaEntlt~sek~Ff~~ 256 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE-------LTSWIDSFCLD---ADVFVLVVNAENTLTLSEKQFFHK 256 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchh-------hhHHHHHHhhc---CCeEEEEecCccHhHHHHHHHHHH
Confidence 0001111 13679999999863311 12233444444 899999999998888777777776
Q ss_pred hccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC-----CCCeEEeecCC
Q 027757 146 LGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH-----HPPWIMTSSVT 199 (219)
Q Consensus 146 ~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~ 199 (219)
..+.+..++|+.||+|....+. +..+....++...... .-.++++|++.
T Consensus 257 vs~~KpniFIlnnkwDasase~-----ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 257 VSEEKPNIFILNNKWDASASEP-----ECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred hhccCCcEEEEechhhhhcccH-----HHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 6667778999999999876532 3344444443322111 24689999654
No 334
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.97 E-value=1.7e-08 Score=79.09 Aligned_cols=161 Identities=23% Similarity=0.230 Sum_probs=94.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC-----eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK-----SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
-..|+++|..|+|||||+.+|-+.. ...+..+..+-.-.+.... ++..|-..| ...-..+.+
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDG----------d~~h~~LLk 118 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDG----------DLYHKGLLK 118 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecC----------chhhhhHHh
Confidence 4589999999999999999999973 2222223222111111111 233333333 111123333
Q ss_pred HHhhccCCc-cEEEEEEeCCCCCCcccHHHHHHhc---------------------------------------------
Q 027757 114 GYFLNRESL-VGVLLLIDASVPPQKIDLDCANWLG--------------------------------------------- 147 (219)
Q Consensus 114 ~~~~~~~~~-d~vi~v~d~~~~~~~~~~~~~~~~~--------------------------------------------- 147 (219)
..+..-.-+ -.+|++.|+++|++..+ .+.+|..
T Consensus 119 ~al~ats~aetlviltasms~Pw~~le-sLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~ 197 (473)
T KOG3905|consen 119 FALPATSLAETLVILTASMSNPWTLLE-SLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRT 197 (473)
T ss_pred hcccccCccceEEEEEEecCCcHHHHH-HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccc
Confidence 333332122 36889999999876543 1222322
Q ss_pred ----------------------cCCCcEEEEEEccccccc--ccCCCchHhHHHHHHHHHhcCC-CCCCeEEeecCCCCC
Q 027757 148 ----------------------RNNIPLTFVFTKCDKMKV--AKGRRPDENIKSFQQLIRENYP-HHPPWIMTSSVTGLG 202 (219)
Q Consensus 148 ----------------------~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~ 202 (219)
..++|+++|++|||.... .+-+..++.++-+..+++.++. .....|++|+++..|
T Consensus 198 t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KN 277 (473)
T KOG3905|consen 198 TVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKN 277 (473)
T ss_pred ccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccc
Confidence 145899999999997321 1223344555544455554432 235789999999999
Q ss_pred hHHHHHHHHHH
Q 027757 203 RDELLLHMSQL 213 (219)
Q Consensus 203 v~el~~~l~~~ 213 (219)
++-|+.+|.+.
T Consensus 278 idllyKYivhr 288 (473)
T KOG3905|consen 278 IDLLYKYIVHR 288 (473)
T ss_pred hHHHHHHHHHH
Confidence 99999999764
No 335
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.97 E-value=2.7e-09 Score=78.40 Aligned_cols=57 Identities=39% Similarity=0.556 Sum_probs=49.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY 95 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~ 95 (219)
..++++++|.+|+|||||+|++++.. ...+.+.+++|.....+..+..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKK-VAKVGNKPGVTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC-ceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence 34789999999999999999999974 4467788888988887777778999999996
No 336
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.96 E-value=1.7e-08 Score=74.10 Aligned_cols=87 Identities=20% Similarity=0.209 Sum_probs=62.0
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
....+.+|.+++|+|++++....+..+...+. +.|.++|+||+|+.+. .....+.+.+... ..+++.+
T Consensus 14 ~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~-------~~~~~~~~~~~~~---~~~vi~i 81 (171)
T cd01856 14 KEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADP-------KKTKKWLKYFESK---GEKVLFV 81 (171)
T ss_pred HHHHhhCCEEEEEeeccCccCcCChhhHhHhc--CCCEEEEEehhhcCCh-------HHHHHHHHHHHhc---CCeEEEE
Confidence 34445589999999999877665555555443 5799999999998643 2233333333321 1468999
Q ss_pred ecCCCCChHHHHHHHHHHH
Q 027757 196 SSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~~ 214 (219)
||+++.|++++.+.+.+..
T Consensus 82 Sa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 82 NAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred ECCCcccHHHHHHHHHHHH
Confidence 9999999999999998763
No 337
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.95 E-value=4.1e-10 Score=80.83 Aligned_cols=59 Identities=36% Similarity=0.467 Sum_probs=39.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccc------cccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELA------LTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA 98 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~ 98 (219)
..++++|++|+|||||+|+|.+..... ....-..||++...+..+....++||||+...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~ 100 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSF 100 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcc
Confidence 679999999999999999999973221 11233346666677777778899999998643
No 338
>PRK12288 GTPase RsgA; Reviewed
Probab=98.95 E-value=3.2e-09 Score=86.10 Aligned_cols=58 Identities=29% Similarity=0.302 Sum_probs=42.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCC-------CeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKP-------GKTQLINHFLVNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpg~~~~~ 99 (219)
.++++|++|+|||||+|+|++.. ...+...+ .||+....+..+....++||||+....
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~-~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEA-EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhcccc-ceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCccc
Confidence 48999999999999999999873 33333332 366676666666556799999986543
No 339
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.95 E-value=5.8e-09 Score=74.12 Aligned_cols=75 Identities=15% Similarity=0.095 Sum_probs=56.0
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccC--CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRN--NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
+..+.+|++++|+|+.++.+..+..+.+++... ++|+++|+||+|+.+. +...++.+.+.... .++++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~-------~~~~~~~~~~~~~~---~~ii~ 76 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE-------EQRKAWAEYFKKEG---IVVVF 76 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH-------HHHHHHHHHHHhcC---CeEEE
Confidence 334458999999999998887777777887765 8999999999998653 23444555554332 57899
Q ss_pred eecCCCC
Q 027757 195 TSSVTGL 201 (219)
Q Consensus 195 ~Sa~~~~ 201 (219)
+||+++.
T Consensus 77 iSa~~~~ 83 (141)
T cd01857 77 FSALKEN 83 (141)
T ss_pred EEecCCC
Confidence 9999875
No 340
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.93 E-value=4.5e-09 Score=75.94 Aligned_cols=57 Identities=37% Similarity=0.522 Sum_probs=48.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY 95 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~ 95 (219)
...+++++|.+|+|||||+|++.+. ....+.+.+++|........+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 4578999999999999999999986 46677888888877766666778999999995
No 341
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.92 E-value=3.6e-09 Score=82.01 Aligned_cols=95 Identities=20% Similarity=0.168 Sum_probs=64.8
Q ss_pred hhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccH-HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 106 MDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDL-DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 106 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~-~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
++|+.+.+.++++ +|.+++|+|+.++. +.... +.+..+...++|+++|+||+|+.+.. ....++.+.+.
T Consensus 24 eR~~~L~r~~~~n---~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~------~~~~~~~~~~~ 94 (245)
T TIGR00157 24 ERKNELTRPIVAN---IDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE------DMEKEQLDIYR 94 (245)
T ss_pred cccceEECccccc---CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH------HHHHHHHHHHH
Confidence 4445556667777 89999999999876 43322 22223334789999999999996532 11123334443
Q ss_pred hcCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757 184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
. ...+++++||+++.|++++++.+.+
T Consensus 95 ~---~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 N---IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred H---CCCeEEEEecCCchhHHHHHhhhcC
Confidence 2 2268999999999999999988753
No 342
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=8.2e-09 Score=81.21 Aligned_cols=149 Identities=15% Similarity=0.184 Sum_probs=98.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc--------------ccccccCCCCeeEEe---eEEEecCeEEEEeCCCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK--------------ELALTSKKPGKTQLI---NHFLVNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~--------------~~~~~~~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~ 99 (219)
....+|.-+|....|||||..+++.-. +.+......|.|... .+..-..++-=+||||+
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH---- 127 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH---- 127 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch----
Confidence 346789999999999999999888531 112222334444433 33333456778999996
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccc-cccCCCchHhHHH
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMK-VAKGRRPDENIKS 177 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~-~~~~~~~~~~~~~ 177 (219)
..+.+..+.+..+.|+.|+|+.++++...+.++.+-..++-.++ +++.+||.|+.+ ++..+..+.++.+
T Consensus 128 ---------ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RE 198 (449)
T KOG0460|consen 128 ---------ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRE 198 (449)
T ss_pred ---------HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHH
Confidence 34555566667778999999999998888887766666665554 788899999984 4333333444444
Q ss_pred HHHHHHhcCCCCCCeEEeecCC
Q 027757 178 FQQLIRENYPHHPPWIMTSSVT 199 (219)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~Sa~~ 199 (219)
++..++ +-+..+|++.=||..
T Consensus 199 lLse~g-f~Gd~~PvI~GSAL~ 219 (449)
T KOG0460|consen 199 LLSEFG-FDGDNTPVIRGSALC 219 (449)
T ss_pred HHHHcC-CCCCCCCeeecchhh
Confidence 444433 223467888777654
No 343
>PRK12289 GTPase RsgA; Reviewed
Probab=98.91 E-value=3.4e-09 Score=85.99 Aligned_cols=59 Identities=31% Similarity=0.404 Sum_probs=45.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCC-------eeEEeeEEEecCeEEEEeCCCCCCCCC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPG-------KTQLINHFLVNKSWYIVDLPGYGFAKA 100 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~liDtpg~~~~~~ 100 (219)
.++|+|++|+|||||+|+|++. ....+...++ ||++...+..+....++||||+.....
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~l 239 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPDL 239 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccccc
Confidence 4899999999999999999986 3444454554 778777776655568999999865444
No 344
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.91 E-value=4.4e-08 Score=82.01 Aligned_cols=160 Identities=19% Similarity=0.177 Sum_probs=95.0
Q ss_pred CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhH
Q 027757 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDW 108 (219)
Q Consensus 32 ~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~ 108 (219)
+.......+++.++|+.++|||.+++.|+|+.+.....+.......++.....+ -+++-|.+-........
T Consensus 418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~------ 491 (625)
T KOG1707|consen 418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTS------ 491 (625)
T ss_pred cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccccccccC------
Confidence 344456678999999999999999999999853332222222222222222222 34555554321110100
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHH--HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757 109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN--WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186 (219)
Q Consensus 109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~--~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
....+|++.+++|.+++.++....... .....+.|+++|.+|+|+....++..... .++.++++-
T Consensus 492 ---------ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqp--de~~~~~~i-- 558 (625)
T KOG1707|consen 492 ---------KEAACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQP--DEFCRQLGL-- 558 (625)
T ss_pred ---------ccceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCCh--HHHHHhcCC--
Confidence 012289999999999888776643222 22237899999999999987644332222 556665442
Q ss_pred CCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 187 PHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.+.+.+|.+.... .++|..|...+
T Consensus 559 ---~~P~~~S~~~~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 559 ---PPPIHISSKTLSS-NELFIKLATMA 582 (625)
T ss_pred ---CCCeeeccCCCCC-chHHHHHHHhh
Confidence 3445666664333 78888777654
No 345
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.91 E-value=3.5e-08 Score=77.97 Aligned_cols=94 Identities=16% Similarity=0.157 Sum_probs=68.5
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
...+......+.+|++++|+|+..+.+..+..+.+.+. ++|+++|+||+|+.+. .....+.+.+... .
T Consensus 10 k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~-------~~~~~~~~~~~~~---~ 77 (276)
T TIGR03596 10 KARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADP-------AVTKQWLKYFEEK---G 77 (276)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCH-------HHHHHHHHHHHHc---C
Confidence 34444445555599999999999887777666666653 6899999999998643 2234454444331 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+++++||+++.|++++.+.+.+.+.
T Consensus 78 ~~vi~iSa~~~~gi~~L~~~i~~~~~ 103 (276)
T TIGR03596 78 IKALAINAKKGKGVKKIIKAAKKLLK 103 (276)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 47899999999999999999887654
No 346
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.86 E-value=2.2e-08 Score=93.07 Aligned_cols=125 Identities=18% Similarity=0.240 Sum_probs=78.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccc------cCCCCeeEEeeEEEecCeEEEEeCCCCCCCC--CCcchhhhHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALT------SKKPGKTQLINHFLVNKSWYIVDLPGYGFAK--APDVTRMDWSS 110 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~--~~~~~~~~~~~ 110 (219)
.|=-+|+|++|+||||+++.- |-.+.... ....+-|.+ ..++..++.+++||+|.-... ........|..
T Consensus 111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecCCEEEEcCCCccccCCCcccccHHHHHH
Confidence 356899999999999999987 33222211 011122332 345567788899999943221 12233455777
Q ss_pred HHHHH--hhccCCccEEEEEEeCCCCCCcccH---H----HHHHhc------cCCCcEEEEEEccccccc
Q 027757 111 FTKGY--FLNRESLVGVLLLIDASVPPQKIDL---D----CANWLG------RNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 111 ~~~~~--~~~~~~~d~vi~v~d~~~~~~~~~~---~----~~~~~~------~~~~p~iiv~nK~D~~~~ 165 (219)
+.... +|..+..++||+++|+.+-...... . +...+. ....|+.+|+||||+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 76644 3445678999999999975443221 1 111111 268999999999998864
No 347
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.85 E-value=5.4e-08 Score=79.66 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=71.1
Q ss_pred hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
..+.|..+...+... ++++++|+|+.+.......++.+.+. +.|+++|+||+|+.+.. ...+...++.++..
T Consensus 49 ~~e~f~~~l~~~~~~---~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~---~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 49 NDDDFLNLLNSLGDS---NALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKS---VNLSKIKEWMKKRA 120 (360)
T ss_pred CHHHHHHHHhhcccC---CcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCC---CCHHHHHHHHHHHH
Confidence 356677777777766 79999999998766544444444443 67999999999997532 22344555544322
Q ss_pred hcCCC-CCCeEEeecCCCCChHHHHHHHHHH
Q 027757 184 ENYPH-HPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 184 ~~~~~-~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
...+. ...++++||+++.|++++++.+.+.
T Consensus 121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 22222 2358999999999999999999765
No 348
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.85 E-value=2.8e-07 Score=70.61 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeEEEe------cCeEEEEeCCCCCCCCCCc-chhhhHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINHFLV------NKSWYIVDLPGYGFAKAPD-VTRMDWS 109 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~------~~~~~liDtpg~~~~~~~~-~~~~~~~ 109 (219)
....|.|+|++++|||+|+|.|++.. ..........+|+.+-.+.. +..++++||||+....... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~--- 82 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA--- 82 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh---
Confidence 34579999999999999999999972 23333344556665444332 3579999999986543332 1111
Q ss_pred HHHHHHhhccCCccEEEEEEeCCC
Q 027757 110 SFTKGYFLNRESLVGVLLLIDASV 133 (219)
Q Consensus 110 ~~~~~~~~~~~~~d~vi~v~d~~~ 133 (219)
.+....... ++.+||..+...
T Consensus 83 ~~~~l~~ll---ss~~i~n~~~~~ 103 (224)
T cd01851 83 RLFALATLL---SSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHHH---hCEEEEeccCcc
Confidence 111211112 688888887764
No 349
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.84 E-value=9.2e-09 Score=79.78 Aligned_cols=58 Identities=31% Similarity=0.296 Sum_probs=41.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccccccc-------CCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTS-------KKPGKTQLINHFLVNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~liDtpg~~~~~ 99 (219)
..++++|++|+|||||+|+|.+.. ...+. ....||++...+.. ....++||||+....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhh-hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccC
Confidence 479999999999999999999863 22222 22336766666655 345899999986533
No 350
>PRK13796 GTPase YqeH; Provisional
Probab=98.83 E-value=6.3e-09 Score=85.23 Aligned_cols=57 Identities=30% Similarity=0.486 Sum_probs=47.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc----ccccccCCCCeeEEeeEEEecCeEEEEeCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKK----ELALTSKKPGKTQLINHFLVNKSWYIVDLPGYG 96 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~ 96 (219)
.++.++|.+|+|||||+|+|++.. ....+++.+|+|.....+..+....++||||+.
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcc
Confidence 579999999999999999999642 234568899999998877777778999999984
No 351
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.83 E-value=1.5e-08 Score=79.37 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=45.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccc------cccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCC
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELA------LTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKA 100 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~ 100 (219)
..+++|++|+|||||+|+|.+..... ....-..||++...+..+..-.++||||+.....
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l 231 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGL 231 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCc
Confidence 68899999999999999999853111 1224445788888888876778899999876544
No 352
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.3e-08 Score=86.35 Aligned_cols=113 Identities=19% Similarity=0.245 Sum_probs=78.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccC---------------CCCeeEEee--EEEe------cCeEEEEeCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSK---------------KPGKTQLIN--HFLV------NKSWYIVDLPGY 95 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~---------------~~~~t~~~~--~~~~------~~~~~liDtpg~ 95 (219)
...|+++|.-++|||+|+..|..........+ ..+++.... .... .+-+.++||||+
T Consensus 128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH 207 (971)
T KOG0468|consen 128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH 207 (971)
T ss_pred EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence 45799999999999999999998742211110 112222211 1111 124788999996
Q ss_pred CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
... .+-....++. +|++++|+|+.++......++++...+.+.|+.+|+||+|++-
T Consensus 208 VnF----------~DE~ta~l~~---sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLi 263 (971)
T KOG0468|consen 208 VNF----------SDETTASLRL---SDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLI 263 (971)
T ss_pred ccc----------hHHHHHHhhh---cceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHH
Confidence 432 2222334444 8999999999999999888889988889999999999999653
No 353
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.83 E-value=7.2e-08 Score=76.60 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=68.9
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+..+......+.+|++|+|+|+..+.+..+..+.+.+. ++|.++|+||+|+.+. ...+.+.+.+... .
T Consensus 13 k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~-------~~~~~~~~~~~~~---~ 80 (287)
T PRK09563 13 KARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP-------EVTKKWIEYFEEQ---G 80 (287)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH-------HHHHHHHHHHHHc---C
Confidence 44455555566699999999999887776655555554 7899999999998643 2244454444321 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+++.+|++++.|++++.+.+.+.+.
T Consensus 81 ~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 81 IKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 47899999999999999999887654
No 354
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.9e-08 Score=80.17 Aligned_cols=162 Identities=19% Similarity=0.165 Sum_probs=98.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccc---------------ccc--CCCCeeEEe-eEE----Ee-----------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELA---------------LTS--KKPGKTQLI-NHF----LV----------- 83 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~---------------~~~--~~~~~t~~~-~~~----~~----------- 83 (219)
.-..|++++|...+|||||+.-|++.. .. .+. .+......+ .+. .+
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi 243 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI 243 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence 336799999999999999999888652 11 000 000000000 000 00
Q ss_pred ----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEc
Q 027757 84 ----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK 159 (219)
Q Consensus 84 ----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 159 (219)
..-++++|..|+..-...+. .-+ .-...|..++|+.+..+......+.+..+...++|++++++|
T Consensus 244 ~e~SSKlvTfiDLAGh~kY~~TTi----------~gL-tgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK 312 (591)
T KOG1143|consen 244 VEKSSKLVTFIDLAGHAKYQKTTI----------HGL-TGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTK 312 (591)
T ss_pred HhhhcceEEEeecccchhhheeee----------eec-ccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEe
Confidence 11368899988642111110 000 112357889999999988888888888888899999999999
Q ss_pred ccccccccCCCchHhHHHHHHHHH--------------------hcCCCCCCeEEeecCCCCChHHHHHHH
Q 027757 160 CDKMKVAKGRRPDENIKSFQQLIR--------------------ENYPHHPPWIMTSSVTGLGRDELLLHM 210 (219)
Q Consensus 160 ~D~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~Sa~~~~~v~el~~~l 210 (219)
+|+.+....+..-.++.++....+ ...+.-.|+|.+|+.+|+|++-+...+
T Consensus 313 ~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 313 MDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred eccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 999876432222222222222111 011224689999999999998776655
No 355
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.80 E-value=1.7e-08 Score=69.73 Aligned_cols=112 Identities=13% Similarity=-0.024 Sum_probs=65.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccccccc-CCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTS-KKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN 118 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~ 118 (219)
+||+++|..|+|||+|+.++....+..... ++.+ +..+...+++.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------------------------~~~~~~~~~~s 46 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------------------------IDVYDPTSYES 46 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------------------------hhhccccccCC
Confidence 489999999999999999997653321111 1111 11112223333
Q ss_pred cCCccEEEEEEeCCCCCCcccH--HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 119 RESLVGVLLLIDASVPPQKIDL--DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 119 ~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
++.++.+++.....+.... ..+......++|.+++.||.|+.... ....+ .. .++++.|
T Consensus 47 ---~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~--~~~~~--------~~------~~~~~~s 107 (124)
T smart00010 47 ---FDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEER--QVATE--------EG------LEFAETS 107 (124)
T ss_pred ---CCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhC--cCCHH--------HH------HHHHHHh
Confidence 7888888988876654321 11111123568899999999974321 11111 11 1345678
Q ss_pred cCCCCChH
Q 027757 197 SVTGLGRD 204 (219)
Q Consensus 197 a~~~~~v~ 204 (219)
++++.|+.
T Consensus 108 ~~~~~~~~ 115 (124)
T smart00010 108 AKTPEEGE 115 (124)
T ss_pred CCCcchhh
Confidence 88888774
No 356
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.79 E-value=3.3e-08 Score=78.92 Aligned_cols=87 Identities=22% Similarity=0.243 Sum_probs=60.7
Q ss_pred ccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh-----------------
Q 027757 122 LVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE----------------- 184 (219)
Q Consensus 122 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----------------- 184 (219)
.|.+++++-++-+.-...++.+......++|+++|++|+|+++.+-.+ +..+-+.+.+.+
T Consensus 245 PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLq---EtmKll~rllkS~gcrK~PvlVrs~DDVv 321 (641)
T KOG0463|consen 245 PDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQ---ETMKLLTRLLKSPGCRKLPVLVRSMDDVV 321 (641)
T ss_pred CCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHH---HHHHHHHHHhcCCCcccCcEEEecccceE
Confidence 588999999987776666777777777899999999999999864211 122222222222
Q ss_pred ----cCC--CCCCeEEeecCCCCChHHHHHHHH
Q 027757 185 ----NYP--HHPPWIMTSSVTGLGRDELLLHMS 211 (219)
Q Consensus 185 ----~~~--~~~~~~~~Sa~~~~~v~el~~~l~ 211 (219)
.+. .-||+|.+|..+|.|++-|.-++.
T Consensus 322 ~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN 354 (641)
T KOG0463|consen 322 HAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN 354 (641)
T ss_pred EeeccCccccccceEEeccccCCChHHHHHHHh
Confidence 111 137899999999999987765553
No 357
>PRK00098 GTPase RsgA; Reviewed
Probab=98.79 E-value=2.7e-08 Score=79.44 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=42.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCC-------CeeEEeeEEEecCeEEEEeCCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKP-------GKTQLINHFLVNKSWYIVDLPGYGF 97 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpg~~~ 97 (219)
..++++|++|+|||||+|+|++.. ...+...+ .+|+....+..+....++||||+..
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence 468999999999999999999863 33332222 3566666666666678999999864
No 358
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.7e-08 Score=81.55 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=89.0
Q ss_pred eccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCc----------------ccccccCCCCeeEE---eeEEEecCe
Q 027757 26 KSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKK----------------ELALTSKKPGKTQL---INHFLVNKS 86 (219)
Q Consensus 26 ~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~----------------~~~~~~~~~~~t~~---~~~~~~~~~ 86 (219)
.+......++.....+|.|+....+||||..++++.-. +........|.|.. ....|.+.+
T Consensus 24 kslhs~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~r 103 (753)
T KOG0464|consen 24 KSLHSIINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHR 103 (753)
T ss_pred hhccCCCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccce
Confidence 34444444445566789999999999999999988531 00111123344432 234455678
Q ss_pred EEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 87 WYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 87 ~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
+.++||||+....... + ++.+..|+++.|+|++-+...+.+.++++..++++|-.+.+||+|....
T Consensus 104 inlidtpghvdf~lev----------e---rclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 104 INLIDTPGHVDFRLEV----------E---RCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EeeecCCCcceEEEEH----------H---HHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh
Confidence 9999999975432211 1 2233379999999999998888888888889999999999999998764
No 359
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.78 E-value=3.1e-08 Score=75.30 Aligned_cols=93 Identities=17% Similarity=0.181 Sum_probs=65.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEE-EecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHF-LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~-~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
-..-+|.++|.|.+||||++..+.+. ...+....+++... ... ....++.+.|.||+.....+..|+- +
T Consensus 57 tg~a~vg~vgFPSvGksTl~~~l~g~--~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg------~ 128 (358)
T KOG1487|consen 57 TGDARVGFVGFPSVGKSTLLSKLTGT--FSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG------K 128 (358)
T ss_pred ecceeeeEEecCccchhhhhhhhcCC--CCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc------c
Confidence 34568999999999999999999996 35555555555432 333 3345899999999876555544421 2
Q ss_pred HHhhccCCccEEEEEEeCCCCCCc
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQK 137 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~ 137 (219)
+.+.-++.+..+++|+|+-.|.+.
T Consensus 129 qviavartcnli~~vld~~kp~~h 152 (358)
T KOG1487|consen 129 QVIAVARTCNLIFIVLDVLKPLSH 152 (358)
T ss_pred EEEEEeecccEEEEEeeccCcccH
Confidence 333334558899999999987765
No 360
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=1.4e-08 Score=78.84 Aligned_cols=159 Identities=17% Similarity=0.196 Sum_probs=102.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc---cc----------------------ccccCCCCeeEEe-------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK---EL----------------------ALTSKKPGKTQLI------------- 78 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~---~~----------------------~~~~~~~~~t~~~------------- 78 (219)
...++|.-+|..-.||||++.++.|-. |. ....+.+.+-+..
T Consensus 36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~ 115 (466)
T KOG0466|consen 36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP 115 (466)
T ss_pred eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence 335788889999999999999998752 00 0111222211110
Q ss_pred ---eEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC----CCCcccHHHHHHhccCCC
Q 027757 79 ---NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV----PPQKIDLDCANWLGRNNI 151 (219)
Q Consensus 79 ---~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----~~~~~~~~~~~~~~~~~~ 151 (219)
..+..-.++.++|+||++ -+....++++...|+.++++..++ |.+..++...+.++ =+
T Consensus 116 g~~~~~klvRHVSfVDCPGHD-------------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--Lk 180 (466)
T KOG0466|consen 116 GCEGKMKLVRHVSFVDCPGHD-------------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LK 180 (466)
T ss_pred CCCCceEEEEEEEeccCCchH-------------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hc
Confidence 001112367899999963 244566777666799999998875 34444444444444 35
Q ss_pred cEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 152 PLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 152 p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.++++-||+|+...++. .+..++...-+.....+..|++++||.-+.|++-+.+++.+.
T Consensus 181 hiiilQNKiDli~e~~A---~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkk 239 (466)
T KOG0466|consen 181 HIIILQNKIDLIKESQA---LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKK 239 (466)
T ss_pred eEEEEechhhhhhHHHH---HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhc
Confidence 68999999999875433 233333333333344456799999999999999999998763
No 361
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=3.2e-08 Score=79.27 Aligned_cols=87 Identities=23% Similarity=0.213 Sum_probs=65.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---------------------cCeEEEEeCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---------------------NKSWYIVDLPGYGF 97 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---------------------~~~~~liDtpg~~~ 97 (219)
.++++|+|-||+|||||.|+++... +...++|.||.+++.... .-.+.++|.+|+..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 3689999999999999999999973 777888888876543221 12578999999764
Q ss_pred CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV 133 (219)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 133 (219)
....-.| +...|+...+.+|+++.|+|+..
T Consensus 80 GAs~GeG------LGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 80 GASKGEG------LGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred CcccCCC------cchHHHHhhhhcCeEEEEEEecC
Confidence 4333222 44677777888999999999984
No 362
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.77 E-value=9.7e-09 Score=84.75 Aligned_cols=61 Identities=36% Similarity=0.496 Sum_probs=55.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKA 100 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~ 100 (219)
...|++||.||+||||+||+|.|. -...++.+||.|++..++.....+.|.||||+.+...
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSF 374 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCccccCC
Confidence 578999999999999999999998 4677899999999999999999999999999865433
No 363
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.76 E-value=9.8e-08 Score=80.10 Aligned_cols=66 Identities=24% Similarity=0.213 Sum_probs=42.5
Q ss_pred CCcEEEEEEcccccccccC--CCchHhHHHHHHHHHhcC-CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 150 NIPLTFVFTKCDKMKVAKG--RRPDENIKSFQQLIRENY-PHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 150 ~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+|++||++|+|....-+. ...++.++-+.+.++..+ ..+...|.+|++...+++-|+++|.+.+.
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~ 264 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLY 264 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhc
Confidence 4799999999997542111 122233333333343322 12357899999999999999999877653
No 364
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=1.2e-07 Score=81.71 Aligned_cols=114 Identities=19% Similarity=0.162 Sum_probs=80.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccC----------------CCCeeEE---eeEEEecCeEEEEeCCCC
Q 027757 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSK----------------KPGKTQL---INHFLVNKSWYIVDLPGY 95 (219)
Q Consensus 35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~----------------~~~~t~~---~~~~~~~~~~~liDtpg~ 95 (219)
.......++++.....|||||...|+..+ ...++ +.|.|.. +.....+.-+.+||+||+
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asn--gvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh 82 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASN--GVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH 82 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhc--cEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence 34567789999999999999999998763 22221 1222221 122223456899999996
Q ss_pred CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 163 (219)
.++ .+......+- +|+.++++|+-++...+...++++....+...++|+||+|..
T Consensus 83 vdf----------~sevssas~l---~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl 137 (887)
T KOG0467|consen 83 VDF----------SSEVSSASRL---SDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL 137 (887)
T ss_pred cch----------hhhhhhhhhh---cCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhH
Confidence 432 2333333333 799999999999998888888886666688999999999943
No 365
>PRK12289 GTPase RsgA; Reviewed
Probab=98.72 E-value=9.2e-08 Score=77.70 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=57.7
Q ss_pred ccEEEEEEeCCCCCCccc--HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757 122 LVGVLLLIDASVPPQKID--LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT 199 (219)
Q Consensus 122 ~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 199 (219)
+|.+++|+|+.++..... .+++..+...++|+++|+||+|+.+. ...+.+.+.+.. ...+++++||++
T Consensus 90 vD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~-------~~~~~~~~~~~~---~g~~v~~iSA~t 159 (352)
T PRK12289 90 ADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP-------TEQQQWQDRLQQ---WGYQPLFISVET 159 (352)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh-------HHHHHHHHHHHh---cCCeEEEEEcCC
Confidence 899999999987653221 22333334478999999999999753 234455554432 225789999999
Q ss_pred CCChHHHHHHHHH
Q 027757 200 GLGRDELLLHMSQ 212 (219)
Q Consensus 200 ~~~v~el~~~l~~ 212 (219)
+.|+++|++++..
T Consensus 160 g~GI~eL~~~L~~ 172 (352)
T PRK12289 160 GIGLEALLEQLRN 172 (352)
T ss_pred CCCHHHHhhhhcc
Confidence 9999999988864
No 366
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.69 E-value=7.8e-08 Score=76.36 Aligned_cols=57 Identities=30% Similarity=0.376 Sum_probs=41.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccccccc-------CCCCeeEEeeEEEecCeEEEEeCCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTS-------KKPGKTQLINHFLVNKSWYIVDLPGYGF 97 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~liDtpg~~~ 97 (219)
..++++|++|+|||||+|.|++.. ..... ....+|.....+.......++||||+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~-~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~ 225 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDL-DLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE 225 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchh-hccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence 579999999999999999999863 22211 2233566666666655568999999854
No 367
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=2e-07 Score=78.15 Aligned_cols=136 Identities=22% Similarity=0.208 Sum_probs=84.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccccccc-CCCC-eeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTS-KKPG-KTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++-|+++||+|+|||||+..|+.+ +...+- ...| .|... .....++++.+|.-. +.+.+-
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr-~tk~ti~~i~GPiTvvs---gK~RRiTflEcp~Dl------------~~miDv- 130 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRR-FTKQTIDEIRGPITVVS---GKTRRITFLECPSDL------------HQMIDV- 130 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHH-HHHhhhhccCCceEEee---cceeEEEEEeChHHH------------HHHHhH-
Confidence 3567889999999999999999986 222111 1111 11111 123368899998521 222222
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHHHHHHH----hcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQLIR----ENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 190 (219)
++-+|+|++++|.+=+..-...+++..+..++.| ++.|+|..|+-... ..+......+. .......
T Consensus 131 ---aKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~------stLr~~KKrlkhRfWtEiyqGa 201 (1077)
T COG5192 131 ---AKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNP------STLRSIKKRLKHRFWTEIYQGA 201 (1077)
T ss_pred ---HHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccCh------HHHHHHHHHHhhhHHHHHcCCc
Confidence 3337999999999876665556778888878877 88899999987542 22333333222 2222346
Q ss_pred CeEEeecCC
Q 027757 191 PWIMTSSVT 199 (219)
Q Consensus 191 ~~~~~Sa~~ 199 (219)
..|.+|-..
T Consensus 202 KlFylsgV~ 210 (1077)
T COG5192 202 KLFYLSGVE 210 (1077)
T ss_pred eEEEecccc
Confidence 778887654
No 368
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=3.6e-08 Score=82.93 Aligned_cols=139 Identities=18% Similarity=0.177 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-cccc---------------ccCCCCeeEE---eeEEEecCeEEEEeCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK-ELAL---------------TSKKPGKTQL---INHFLVNKSWYIVDLPGYGF 97 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~-~~~~---------------~~~~~~~t~~---~~~~~~~~~~~liDtpg~~~ 97 (219)
.....|.+...-.+||||+-++.+... .... .....++|.. ....|.+.++.+|||||+..
T Consensus 37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD 116 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD 116 (721)
T ss_pred hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence 456679999999999999999888542 0110 1111122221 12334467899999999753
Q ss_pred CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHH
Q 027757 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKS 177 (219)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~ 177 (219)
... ..-+..+..|+.|+|+|+-.+...+...+.+++++.++|-+..+||+|.... ..-.
T Consensus 117 FT~-------------EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa--------~~~~ 175 (721)
T KOG0465|consen 117 FTF-------------EVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGA--------SPFR 175 (721)
T ss_pred EEE-------------EehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCC--------ChHH
Confidence 322 1122344479999999999998888889999999999999999999998864 3445
Q ss_pred HHHHHHhcCCCCCCeEEee
Q 027757 178 FQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~S 196 (219)
.++++...+.....++.+-
T Consensus 176 ~l~~i~~kl~~~~a~vqiP 194 (721)
T KOG0465|consen 176 TLNQIRTKLNHKPAVVQIP 194 (721)
T ss_pred HHHHHHhhcCCchheeEcc
Confidence 5566655555444444443
No 369
>PRK00098 GTPase RsgA; Reviewed
Probab=98.64 E-value=1.9e-07 Score=74.61 Aligned_cols=83 Identities=23% Similarity=0.197 Sum_probs=57.7
Q ss_pred CCccEEEEEEeCCCCCCcccH--HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757 120 ESLVGVLLLIDASVPPQKIDL--DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 197 (219)
..+|.+++|+|+.++...... +.+..+...++|+++|+||+|+.+. .+...++.+.+... ..+++++||
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~------~~~~~~~~~~~~~~---g~~v~~vSA 149 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD------LEEARELLALYRAI---GYDVLELSA 149 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC------HHHHHHHHHHHHHC---CCeEEEEeC
Confidence 348999999999877554332 2333345578999999999999632 12333344433321 257999999
Q ss_pred CCCCChHHHHHHHH
Q 027757 198 VTGLGRDELLLHMS 211 (219)
Q Consensus 198 ~~~~~v~el~~~l~ 211 (219)
+++.|++++++.+.
T Consensus 150 ~~g~gi~~L~~~l~ 163 (298)
T PRK00098 150 KEGEGLDELKPLLA 163 (298)
T ss_pred CCCccHHHHHhhcc
Confidence 99999999998774
No 370
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.62 E-value=3e-07 Score=74.08 Aligned_cols=113 Identities=9% Similarity=-0.010 Sum_probs=64.2
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcc------c--HHHHHHhc---c----CCCcEEEEEEcccccc
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKI------D--LDCANWLG---R----NNIPLTFVFTKCDKMK 164 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~------~--~~~~~~~~---~----~~~p~iiv~nK~D~~~ 164 (219)
++.+|+...+..|..++.+ ++++|||+|.++..... . .+.+..+. . .+.|+++++||.|+..
T Consensus 166 ~DvgGq~~~R~kW~~~f~~---v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~ 242 (317)
T cd00066 166 FDVGGQRSERKKWIHCFED---VTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFE 242 (317)
T ss_pred ECCCCCcccchhHHHHhCC---CCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHH
Confidence 3333444456777788877 89999999999743210 0 11111111 1 5789999999999643
Q ss_pred ccc---------------CCCchHhHHHHHHHHHhcC---CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 165 VAK---------------GRRPDENIKSFQQLIRENY---PHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 165 ~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..- ....+...+-+...+.... +..+-+..++|..-.+++.+|+.+.+.+.
T Consensus 243 ~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~ 311 (317)
T cd00066 243 EKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL 311 (317)
T ss_pred HhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence 210 0111111222222232222 12344567788888888888888877554
No 371
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.62 E-value=3.2e-06 Score=70.89 Aligned_cols=128 Identities=23% Similarity=0.293 Sum_probs=81.3
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccC--------------------------------------------
Q 027757 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSK-------------------------------------------- 70 (219)
Q Consensus 35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~-------------------------------------------- 70 (219)
.....|+|+++|...+||||.++.+......+..+.
T Consensus 304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~ 383 (980)
T KOG0447|consen 304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI 383 (980)
T ss_pred ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence 345578999999999999999999887643322111
Q ss_pred --------CCCeeEEeeEEE--ecC----eEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757 71 --------KPGKTQLINHFL--VNK----SWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV 133 (219)
Q Consensus 71 --------~~~~t~~~~~~~--~~~----~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 133 (219)
..|+|....... +.+ +.+++|.||+..... .....+....+.+.|..+ .+++|+++--.+
T Consensus 384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~N---PNAIILCIQDGS 460 (980)
T KOG0447|consen 384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQN---PNAIILCIQDGS 460 (980)
T ss_pred HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcC---CCeEEEEeccCC
Confidence 112333222111 111 689999999754322 233445556778888777 788888775443
Q ss_pred CCCc--ccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 134 PPQK--IDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 134 ~~~~--~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
-+.. .-.++...+...+...|+|+||.|+...
T Consensus 461 VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 461 VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence 2211 1124556666788899999999998754
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.59 E-value=1.4e-06 Score=70.01 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=79.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccccc------ccCCCC------------eeEEeeEE-------------------
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELAL------TSKKPG------------KTQLINHF------------------- 81 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~------~~~~~~------------~t~~~~~~------------------- 81 (219)
...++++|++|+||||++..|.+.- ... ...... ........
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l-~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKY-KAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-HhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999888641 110 000000 00000111
Q ss_pred -EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh-hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEc
Q 027757 82 -LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF-LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK 159 (219)
Q Consensus 82 -~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 159 (219)
..+..++++||||...... ....++..+.+..- ......+.+++|+|++.+..... . .....+.-.+.-+|+||
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~--~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~-a~~f~~~~~~~giIlTK 268 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKT--NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-Q-AKAFHEAVGLTGIILTK 268 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCH--HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-H-HHHHHhhCCCCEEEEEC
Confidence 1134789999999643221 11122223322110 01123578999999995433221 1 22222222356899999
Q ss_pred ccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHH
Q 027757 160 CDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL 208 (219)
Q Consensus 160 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~ 208 (219)
.|..... -.+-.+....+ .|+.+++ +|.+++++..
T Consensus 269 lD~t~~~------G~~l~~~~~~~------~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 269 LDGTAKG------GVVFAIADELG------IPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CCCCCCc------cHHHHHHHHHC------CCEEEEe--CCCChhhCcc
Confidence 9954321 12333333332 6888888 7777777643
No 373
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.57 E-value=5.1e-08 Score=78.29 Aligned_cols=62 Identities=29% Similarity=0.527 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~ 99 (219)
...+-|+++|.+++||||+||.|-.. ....+.|.+|.|..+.+++.-..++||||||+....
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps 366 (572)
T KOG2423|consen 305 KKQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPS 366 (572)
T ss_pred ccceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCccCCC
Confidence 44688999999999999999999997 689999999999999988888899999999976443
No 374
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.57 E-value=4.5e-07 Score=65.67 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=39.5
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHH-HHHHHhhccCCccEEEEEEeCCCCCCcc--cHHHHHHhccCCCcEEEEEEccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSS-FTKGYFLNRESLVGVLLLIDASVPPQKI--DLDCANWLGRNNIPLTFVFTKCD 161 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~~~~p~iiv~nK~D 161 (219)
.+.+++||||+.... ...+. +....+...-.+|.+++++|+.+..... ......++...+ ++|+||+|
T Consensus 87 ~d~I~IEt~G~~~p~------~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad---~ivlnk~d 157 (158)
T cd03112 87 FDRIVIETTGLADPG------PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD---RILLNKTD 157 (158)
T ss_pred CCEEEEECCCcCCHH------HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC---EEEEeccc
Confidence 367899999975321 11111 1122333444479999999997533221 112234444444 88999999
Q ss_pred c
Q 027757 162 K 162 (219)
Q Consensus 162 ~ 162 (219)
+
T Consensus 158 l 158 (158)
T cd03112 158 L 158 (158)
T ss_pred C
Confidence 5
No 375
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=5.2e-07 Score=82.49 Aligned_cols=124 Identities=23% Similarity=0.326 Sum_probs=79.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccc-----cccCCCCeeEEeeEEEecCeEEEEeCCCC-CCC-CCCcchhhhHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELA-----LTSKKPGKTQLINHFLVNKSWYIVDLPGY-GFA-KAPDVTRMDWSSFT 112 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~liDtpg~-~~~-~~~~~~~~~~~~~~ 112 (219)
|=-+|+|++|+||||++..--..-.+. ......+ |.++. ++...+.++|||.|- ... ..+.....+|..+.
T Consensus 126 PWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 126 PWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred CceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 446889999999999887654431111 1122223 45555 677788999999993 222 23344566666664
Q ss_pred HH--HhhccCCccEEEEEEeCCCCCCcccHHH---HHHhc----------cCCCcEEEEEEccccccc
Q 027757 113 KG--YFLNRESLVGVLLLIDASVPPQKIDLDC---ANWLG----------RNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 113 ~~--~~~~~~~~d~vi~v~d~~~~~~~~~~~~---~~~~~----------~~~~p~iiv~nK~D~~~~ 165 (219)
.. .++..+..++||+.+++.+-.+....+. ...++ ....|+++++||.|+.+.
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 43 3556667899999999997544333211 22222 267999999999999874
No 376
>PRK14974 cell division protein FtsY; Provisional
Probab=98.54 E-value=1.4e-06 Score=70.33 Aligned_cols=101 Identities=17% Similarity=0.099 Sum_probs=56.1
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
..++++||+|..... . ..+..+ ....+.. ..|.+++|+|+..+... ....+.+...-..--+++||.|...
T Consensus 223 ~DvVLIDTaGr~~~~--~---~lm~eL-~~i~~~~-~pd~~iLVl~a~~g~d~--~~~a~~f~~~~~~~giIlTKlD~~~ 293 (336)
T PRK14974 223 IDVVLIDTAGRMHTD--A---NLMDEL-KKIVRVT-KPDLVIFVGDALAGNDA--VEQAREFNEAVGIDGVILTKVDADA 293 (336)
T ss_pred CCEEEEECCCccCCc--H---HHHHHH-HHHHHhh-CCceEEEeeccccchhH--HHHHHHHHhcCCCCEEEEeeecCCC
Confidence 368999999965321 1 111222 2222222 25889999999754321 2223333322235688999999865
Q ss_pred cccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHH
Q 027757 165 VAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL 208 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~ 208 (219)
..+ ..-.+....+ .|+.+++ +|.+++++..
T Consensus 294 ~~G------~~ls~~~~~~------~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 294 KGG------AALSIAYVIG------KPILFLG--VGQGYDDLIP 323 (336)
T ss_pred Ccc------HHHHHHHHHC------cCEEEEe--CCCChhhccc
Confidence 321 2222233322 6888887 7888877654
No 377
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.54 E-value=5e-07 Score=73.37 Aligned_cols=87 Identities=18% Similarity=0.095 Sum_probs=58.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEec------------------CeEEEEeCCCCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVN------------------KSWYIVDLPGYGFAK 99 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~------------------~~~~liDtpg~~~~~ 99 (219)
.+++|+|.+++|||||+|++++.. .....+.+.+|..+.. .... ..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~-~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLL-GNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCC-ccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 689999999999999999999974 3255555666554322 2211 257899999975432
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV 133 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 133 (219)
....| +...++...+.+|+++.|+++.+
T Consensus 82 s~g~G------lgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 82 SKGEG------LGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred hcccC------cchHHHHHHHhCCEEEEEEeCCC
Confidence 22211 22345555666999999999864
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.52 E-value=3.5e-06 Score=66.34 Aligned_cols=106 Identities=17% Similarity=0.120 Sum_probs=56.7
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh-hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF-LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 163 (219)
..++++||||.... +..-..++..+....- .....+|.+++|+|++.+.. .......+.+.-.+.-+|+||.|..
T Consensus 155 ~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~~~g~IlTKlDe~ 230 (272)
T TIGR00064 155 IDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFNEAVGLTGIILTKLDGT 230 (272)
T ss_pred CCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHHhhCCCCEEEEEccCCC
Confidence 47899999997532 2222222222222111 00123688999999974322 2222222222123568899999976
Q ss_pred ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHH
Q 027757 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL 208 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~ 208 (219)
... -..-.+....+ .|+.+++ +|.+++++..
T Consensus 231 ~~~------G~~l~~~~~~~------~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 231 AKG------GIILSIAYELK------LPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred CCc------cHHHHHHHHHC------cCEEEEe--CCCChHhCcc
Confidence 432 12333333332 6888888 7777777644
No 379
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.51 E-value=1e-06 Score=71.60 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=63.7
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC---------ccc--HHHHHHhcc----CCCcEEEEEEcccccc
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ---------KID--LDCANWLGR----NNIPLTFVFTKCDKMK 164 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---------~~~--~~~~~~~~~----~~~p~iiv~nK~D~~~ 164 (219)
|+.+|+...+..|..++.+ ++++|||+|.++... ... +..+..+-. .+.|+++++||.|+..
T Consensus 189 ~DvgGqr~~R~kW~~~f~~---v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~ 265 (342)
T smart00275 189 FDVGGQRSERKKWIHCFDN---VTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFE 265 (342)
T ss_pred EecCCchhhhhhHHHHhCC---CCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHH
Confidence 3444455557788888877 899999999997421 110 111221111 5789999999999653
Q ss_pred ccc--------------CCCchHhHHHHHHHHHhcCC----CCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 165 VAK--------------GRRPDENIKSFQQLIRENYP----HHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 165 ~~~--------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
..- ....+...+-+.+.+..... ..+-+..++|..-.++..+++.+.+..
T Consensus 266 ~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I 333 (342)
T smart00275 266 EKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDII 333 (342)
T ss_pred HHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHH
Confidence 211 11111112222223332222 223456777887788888887776643
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=98.51 E-value=2.9e-06 Score=69.68 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=59.7
Q ss_pred cc-EEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC-CCCeEEeecCC
Q 027757 122 LV-GVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH-HPPWIMTSSVT 199 (219)
Q Consensus 122 ~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 199 (219)
.| .+++|+|+.+........+.+... +.|+++|+||+|+.+.. ...+.++++.+......+. ...++.+||++
T Consensus 69 ~~~lIv~VVD~~D~~~s~~~~L~~~~~--~kpviLViNK~DLl~~~---~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~ 143 (365)
T PRK13796 69 SDALVVNVVDIFDFNGSWIPGLHRFVG--NNPVLLVGNKADLLPKS---VKKNKVKNWLRQEAKELGLRPVDVVLISAQK 143 (365)
T ss_pred cCcEEEEEEECccCCCchhHHHHHHhC--CCCEEEEEEchhhCCCc---cCHHHHHHHHHHHHHhcCCCcCcEEEEECCC
Confidence 44 899999998865443333333332 68999999999997531 2234455555544333322 23689999999
Q ss_pred CCChHHHHHHHHHHH
Q 027757 200 GLGRDELLLHMSQLR 214 (219)
Q Consensus 200 ~~~v~el~~~l~~~~ 214 (219)
+.|++++++.+.+..
T Consensus 144 g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 144 GHGIDELLEAIEKYR 158 (365)
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999997653
No 381
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.50 E-value=2.4e-06 Score=68.60 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=79.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcc---cccccCCCC---ee-------E--Eee-------EEE---------------
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKE---LALTSKKPG---KT-------Q--LIN-------HFL--------------- 82 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~---~~~~~~~~~---~t-------~--~~~-------~~~--------------- 82 (219)
+-.+|-|.=|||||||+|+++.+.. .+..-+..| .. . .+. ..+
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 4578899999999999999998742 111111000 00 0 000 011
Q ss_pred -ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc---HHHHHHhccCCCcEEEEEE
Q 027757 83 -VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID---LDCANWLGRNNIPLTFVFT 158 (219)
Q Consensus 83 -~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~---~~~~~~~~~~~~p~iiv~n 158 (219)
.+...++|.|-|+..+ .......+....+...-..|++|.|+|+.+...... .....++.-.+ ++|+|
T Consensus 82 ~~~~D~ivIEtTGlA~P-----~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD---~ivlN 153 (323)
T COG0523 82 RDRPDRLVIETTGLADP-----APVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD---VIVLN 153 (323)
T ss_pred cCCCCEEEEeCCCCCCC-----HHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc---EEEEe
Confidence 0125688899887543 111112222233434444689999999998655433 12223333333 99999
Q ss_pred cccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757 159 KCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197 (219)
Q Consensus 159 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 197 (219)
|+|+.+++ .++.+...++. .+...+++.++.
T Consensus 154 K~Dlv~~~-------~l~~l~~~l~~-lnp~A~i~~~~~ 184 (323)
T COG0523 154 KTDLVDAE-------ELEALEARLRK-LNPRARIIETSY 184 (323)
T ss_pred cccCCCHH-------HHHHHHHHHHH-hCCCCeEEEccc
Confidence 99999862 34444444443 344467888776
No 382
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.49 E-value=6.7e-07 Score=70.64 Aligned_cols=89 Identities=21% Similarity=0.227 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--------------------cCeEEEEeCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--------------------NKSWYIVDLPGYG 96 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~liDtpg~~ 96 (219)
.+.++++|+|-+++|||||+|+|+... +...+.|.+|.++.+-.+ ...+.+.|..|+.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~--a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv 95 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSK--AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV 95 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCC--CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence 467899999999999999999999973 447888888877654322 1257899999975
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV 133 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 133 (219)
.....-. -+...|+...+.+|+++-|+++..
T Consensus 96 kGAs~G~------GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 96 KGASAGE------GLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcccCc------CchHHHHHhhhhccceeEEEEecC
Confidence 4322222 244566666777999999998874
No 383
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.48 E-value=8e-07 Score=70.64 Aligned_cols=81 Identities=19% Similarity=0.085 Sum_probs=55.6
Q ss_pred ccEEEEEEeCCCCC-CcccH-HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757 122 LVGVLLLIDASVPP-QKIDL-DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT 199 (219)
Q Consensus 122 ~d~vi~v~d~~~~~-~~~~~-~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 199 (219)
+|.+++|+|+.++. +.... +.+..+...++|+++|+||+|+.+.. ....+...... ...+++++||++
T Consensus 79 vD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~-------~~~~~~~~~~~---~g~~v~~vSA~~ 148 (287)
T cd01854 79 VDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE-------EEELELVEALA---LGYPVLAVSAKT 148 (287)
T ss_pred CCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH-------HHHHHHHHHHh---CCCeEEEEECCC
Confidence 89999999999876 43222 22333445789999999999997531 11112222211 226899999999
Q ss_pred CCChHHHHHHHHH
Q 027757 200 GLGRDELLLHMSQ 212 (219)
Q Consensus 200 ~~~v~el~~~l~~ 212 (219)
+.|+++++.+|..
T Consensus 149 g~gi~~L~~~L~~ 161 (287)
T cd01854 149 GEGLDELREYLKG 161 (287)
T ss_pred CccHHHHHhhhcc
Confidence 9999999988753
No 384
>PRK12288 GTPase RsgA; Reviewed
Probab=98.48 E-value=1.1e-06 Score=71.40 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=57.0
Q ss_pred CccEEEEEEeCCCCCCcccH-HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757 121 SLVGVLLLIDASVPPQKIDL-DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT 199 (219)
Q Consensus 121 ~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 199 (219)
.+|.+++|++.....+.... +++..+...++|.++|+||+|+.+... .....++...+.. ...+++++||++
T Consensus 120 NvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~----~~~~~~~~~~y~~---~g~~v~~vSA~t 192 (347)
T PRK12288 120 NIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEG----RAFVNEQLDIYRN---IGYRVLMVSSHT 192 (347)
T ss_pred EccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHH----HHHHHHHHHHHHh---CCCeEEEEeCCC
Confidence 37999999998754444322 222233456799999999999975421 1123333333322 226899999999
Q ss_pred CCChHHHHHHHHH
Q 027757 200 GLGRDELLLHMSQ 212 (219)
Q Consensus 200 ~~~v~el~~~l~~ 212 (219)
+.|+++|+++|..
T Consensus 193 g~GideL~~~L~~ 205 (347)
T PRK12288 193 GEGLEELEAALTG 205 (347)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999998864
No 385
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.45 E-value=1.6e-07 Score=75.51 Aligned_cols=65 Identities=29% Similarity=0.423 Sum_probs=57.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcc
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~ 103 (219)
..++++|+|-+++||||+||+|..+ ....+.+.+|.|+....+..+..+.|+|.||+.....+..
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~~~ 315 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSIDEK 315 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceeecCCCcc
Confidence 3689999999999999999999998 5788999999999999999999999999999876555443
No 386
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.41 E-value=1.5e-06 Score=67.02 Aligned_cols=132 Identities=18% Similarity=0.227 Sum_probs=77.1
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCC--CC-----eeEEeeEEEecCeEEEEeCCCCCCCCCCcch-
Q 027757 33 DCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKK--PG-----KTQLINHFLVNKSWYIVDLPGYGFAKAPDVT- 104 (219)
Q Consensus 33 ~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~--~~-----~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~- 104 (219)
...++..++|+.+|.+|.|||||++.|++.++-...++- +. .|+......+..+++++||.|++++......
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Sy 115 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSY 115 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccccc
Confidence 344567899999999999999999999997543322221 11 1222222223347899999999865443221
Q ss_pred -------hhhHHHHHHHHhhc--------cCCccEEEEEEeCCC-CCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 105 -------RMDWSSFTKGYFLN--------RESLVGVLLLIDASV-PPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 105 -------~~~~~~~~~~~~~~--------~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
...|+......+.. ....++|+|.+.++- .....++-.++.+. .++.+|-|+-|.|-...
T Consensus 116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKaDtisK 191 (406)
T KOG3859|consen 116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKADTISK 191 (406)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHHhhhhhH
Confidence 11122222222211 123579999998773 22222222222222 57888999999997653
No 387
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.40 E-value=1.6e-06 Score=63.67 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=43.5
Q ss_pred cEEEEEEeCCCCCCcccHHHHHH--hccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757 123 VGVLLLIDASVPPQKIDLDCANW--LGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185 (219)
Q Consensus 123 d~vi~v~d~~~~~~~~~~~~~~~--~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
|++++|+|+..+.+..+..+.+. +...+.|+++|+||+|+.+. +.+..+.+.+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~-------~~l~~~~~~~~~~ 58 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPK-------ENVEKWLKYLRRE 58 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCH-------HHHHHHHHHHHhh
Confidence 68999999999877777777776 55567999999999999764 3466666666553
No 388
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=98.38 E-value=1e-05 Score=65.76 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+-.+|.|.-|||||||+|+++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 4 IPVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 456889999999999999999864
No 389
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.38 E-value=8.9e-07 Score=66.34 Aligned_cols=72 Identities=11% Similarity=0.126 Sum_probs=38.8
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
..++++||||.... +.....++..+.+. .. .+-+++|++++....... ....+....+ +--+++||.|...
T Consensus 84 ~D~vlIDT~Gr~~~--d~~~~~el~~~~~~----~~-~~~~~LVlsa~~~~~~~~-~~~~~~~~~~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPR--DEELLEELKKLLEA----LN-PDEVHLVLSATMGQEDLE-QALAFYEAFG-IDGLILTKLDETA 154 (196)
T ss_dssp SSEEEEEE-SSSST--HHHHHHHHHHHHHH----HS-SSEEEEEEEGGGGGHHHH-HHHHHHHHSS-TCEEEEESTTSSS
T ss_pred CCEEEEecCCcchh--hHHHHHHHHHHhhh----cC-CccceEEEecccChHHHH-HHHHHhhccc-CceEEEEeecCCC
Confidence 36899999997522 22222222233222 22 467999999986433222 2223333233 3466799999764
Q ss_pred c
Q 027757 165 V 165 (219)
Q Consensus 165 ~ 165 (219)
.
T Consensus 155 ~ 155 (196)
T PF00448_consen 155 R 155 (196)
T ss_dssp T
T ss_pred C
Confidence 3
No 390
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.37 E-value=6.8e-06 Score=68.27 Aligned_cols=116 Identities=16% Similarity=0.043 Sum_probs=64.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc------CcccccccCC----------------CCeeEEeeEE--E------------
Q 027757 39 RPEFAILGRSNVGKSSLINALVR------KKELALTSKK----------------PGKTQLINHF--L------------ 82 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~------~~~~~~~~~~----------------~~~t~~~~~~--~------------ 82 (219)
+..|+++|.+|+||||++..|.. .+ ....+.. .+........ .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~k-V~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFK-PCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCC-EEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 45689999999999999998873 21 1111110 1111110000 0
Q ss_pred --ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcc
Q 027757 83 --VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKC 160 (219)
Q Consensus 83 --~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 160 (219)
.+..++++||||.... +.... ..+.. +.... ..|.+++|+|+.-+... ....+.+.+.-.+.-+|+||.
T Consensus 179 ~~~~~DvViIDTaGr~~~--d~~lm---~El~~-i~~~~-~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKl 249 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQ--EDSLF---EEMLQ-VAEAI-QPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKL 249 (429)
T ss_pred HhCCCCEEEEECCCCCcc--hHHHH---HHHHH-Hhhhc-CCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECc
Confidence 1347899999995321 11111 22222 11221 25789999999765433 233444444345678999999
Q ss_pred cccc
Q 027757 161 DKMK 164 (219)
Q Consensus 161 D~~~ 164 (219)
|...
T Consensus 250 D~~a 253 (429)
T TIGR01425 250 DGHA 253 (429)
T ss_pred cCCC
Confidence 9754
No 391
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.35 E-value=5.6e-06 Score=67.70 Aligned_cols=144 Identities=13% Similarity=0.211 Sum_probs=74.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcc-----cccccCCC----------------CeeEEeeE-----------EE--ec
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKE-----LALTSKKP----------------GKTQLINH-----------FL--VN 84 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~-----~~~~~~~~----------------~~t~~~~~-----------~~--~~ 84 (219)
...|+++|++|+||||++..|...-. ....+..+ +....... .. .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 46899999999999999999975310 00001000 00000000 00 02
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
..++++||+|..... ......+ ..++... ..+.+++|+|++-..... ....+.+.. -..--+++||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd-----~~lm~EL-~~~lk~~-~PdevlLVLsATtk~~d~-~~i~~~F~~-~~idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRA-----SETVEEM-IETMGQV-EPDYICLTLSASMKSKDM-IEIITNFKD-IHIDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcC-----HHHHHHH-HHHHhhc-CCCeEEEEECCccChHHH-HHHHHHhcC-CCCCEEEEEcccCCC
Confidence 478999999964321 1112222 2222221 246789999986433221 233444443 234678899999764
Q ss_pred cccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHH
Q 027757 165 VAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDE 205 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e 205 (219)
.- -.+-.+....+ .|+.+++ +|.++++
T Consensus 392 k~------G~iLni~~~~~------lPIsyit--~GQ~VPe 418 (436)
T PRK11889 392 SS------GELLKIPAVSS------APIVLMT--DGQDVKK 418 (436)
T ss_pred Cc------cHHHHHHHHHC------cCEEEEe--CCCCCCc
Confidence 32 12333333333 5666665 4555544
No 392
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.32 E-value=3e-06 Score=69.26 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-.++++|++|+||||++..|...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999864
No 393
>PRK01889 GTPase RsgA; Reviewed
Probab=98.31 E-value=4.6e-06 Score=68.22 Aligned_cols=82 Identities=17% Similarity=0.085 Sum_probs=56.6
Q ss_pred CCccEEEEEEeCCCCCCccc-HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecC
Q 027757 120 ESLVGVLLLIDASVPPQKID-LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSV 198 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 198 (219)
..+|.+++|+++..+..... .+++..+...+++.++|+||+|+.+.. + +..+.+... ....+++.+|++
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~------~---~~~~~~~~~-~~g~~Vi~vSa~ 180 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDA------E---EKIAEVEAL-APGVPVLAVSAL 180 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCH------H---HHHHHHHHh-CCCCcEEEEECC
Confidence 34799999999974443322 244555566889999999999997531 1 112222222 334789999999
Q ss_pred CCCChHHHHHHHH
Q 027757 199 TGLGRDELLLHMS 211 (219)
Q Consensus 199 ~~~~v~el~~~l~ 211 (219)
++.|+++|..+|.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999999885
No 394
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.29 E-value=3.3e-06 Score=60.43 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
++.++|..|+||||++..+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999988754
No 395
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=9.9e-06 Score=68.65 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-.|+|+|++|+||||++..|...
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999988763
No 396
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.25 E-value=1.6e-05 Score=58.66 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=37.5
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc--ccHHHHHHhccCCCcEEEEEEccccc
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK--IDLDCANWLGRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~p~iiv~nK~D~~ 163 (219)
..+++.+.|..... ... +....+...-..+.+|.|+|+.+.... ....+..++...+ ++|+||+|+.
T Consensus 86 d~IiIE~sG~a~p~-----~l~---~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD---vIvlnK~D~~ 154 (178)
T PF02492_consen 86 DRIIIETSGLADPA-----PLI---LQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD---VIVLNKIDLV 154 (178)
T ss_dssp SEEEEEEECSSGGG-----GHH---HHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S---EEEEE-GGGH
T ss_pred CEEEECCccccccc-----hhh---hccccccccccccceeEEeccccccccccchhhhhhcchhcC---EEEEeccccC
Confidence 57888998854221 110 011112222225899999999653111 1123344555444 9999999998
Q ss_pred cc
Q 027757 164 KV 165 (219)
Q Consensus 164 ~~ 165 (219)
+.
T Consensus 155 ~~ 156 (178)
T PF02492_consen 155 SD 156 (178)
T ss_dssp HH
T ss_pred Ch
Confidence 76
No 397
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=1.4e-05 Score=60.53 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=68.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCC-CCCCCCcchhhhHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGY-GFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~-~~~~~~~~~~~~~~~~~~ 113 (219)
..++|++||-..+||||+..-++.+ ..+..+-....|..+....+. -.+..||.||- +.....-.- .
T Consensus 26 ~kp~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~--------e 96 (347)
T KOG3887|consen 26 MKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDY--------E 96 (347)
T ss_pred CCceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCH--------H
Confidence 4578999999999999998888776 232222111222222111111 25778999993 332222111 2
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKG 168 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~ 168 (219)
..+++ +-+.|||+|+.+.-...-..+...+. ..++.+=+.+.|.|-+..+..
T Consensus 97 ~iF~~---~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~k 153 (347)
T KOG3887|consen 97 MIFRG---VGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFK 153 (347)
T ss_pred HHHhc---cCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhh
Confidence 33444 78899999987532111111111111 267888899999997765433
No 398
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=1.2e-06 Score=70.74 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccc-----------------------------ccccCCCCeeEEeeE---EEec
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKEL-----------------------------ALTSKKPGKTQLINH---FLVN 84 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~---~~~~ 84 (219)
....+++++|...+||||+...+....-. ....+..+.|..... ..-.
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 45789999999999999988877654100 001111122222211 1123
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc-------HHHHHHhcc-CCCcEEEE
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-------LDCANWLGR-NNIPLTFV 156 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-------~~~~~~~~~-~~~p~iiv 156 (219)
..+.++|+||+. ++......++.++|..++|+.+........ .+.....+. .-...+++
T Consensus 157 ~~ftiLDApGHk-------------~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~ 223 (501)
T KOG0459|consen 157 KRFTILDAPGHK-------------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVL 223 (501)
T ss_pred eeEEeeccCccc-------------ccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEE
Confidence 478999999974 334555666777899999998864322222 122222222 34678999
Q ss_pred EEcccccccccCCCchHhHHHHHHHHHhcC-------CCCCCeEEeecCCCCChHHHH
Q 027757 157 FTKCDKMKVAKGRRPDENIKSFQQLIRENY-------PHHPPWIMTSSVTGLGRDELL 207 (219)
Q Consensus 157 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~el~ 207 (219)
+||+|-...+= ..+.+++..+.+..++ ..+..++++|..+|.++++..
T Consensus 224 vNKMddPtvnW---s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 224 INKMDDPTVNW---SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred EEeccCCccCc---chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 99999653221 1233344333333322 245678999999999988754
No 399
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.19 E-value=4.2e-06 Score=62.03 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..-..++|+.|+||||+++.+...
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h 26 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEH 26 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHH
Confidence 356789999999999999988743
No 400
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.18 E-value=4.7e-06 Score=69.74 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=96.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCe-EEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKS-WYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...|++|+|..++|||+|+-+++...+.....+..+.-........... +.+.|-.|.. . ..|.
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-~--------------aQft 93 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-D--------------AQFC 93 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-h--------------hhhh
Confidence 3689999999999999999988877666655555553333222222222 2233333311 0 1121
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHH-----HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCA-----NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~-----~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
.- +|++|||+...+..+++....+ .+.....+|.++++++.-......+...+.....+..++.. +.
T Consensus 94 ~w---vdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~kr-----cs 165 (749)
T KOG0705|consen 94 QW---VDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKR-----CS 165 (749)
T ss_pred hh---ccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCc-----cc
Confidence 22 7999999999887776553222 12224678999999985444443444444444444443332 78
Q ss_pred eEEeecCCCCChHHHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+|+.++.+|.++..+|..++...
T Consensus 166 y~et~atyGlnv~rvf~~~~~k~ 188 (749)
T KOG0705|consen 166 YYETCATYGLNVERVFQEVAQKI 188 (749)
T ss_pred eeecchhhhhhHHHHHHHHHHHH
Confidence 99999999999999998886644
No 401
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.17 E-value=7.7e-05 Score=60.10 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+-.+|.|.-|||||||+|+++..
T Consensus 4 ipv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred cCEEEEEECCCCCHHHHHHHHHhc
Confidence 577889999999999999999865
No 402
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.16 E-value=5e-06 Score=65.13 Aligned_cols=65 Identities=32% Similarity=0.452 Sum_probs=49.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcC----cccccccCCCCeeEEeeE---EEecCeEEEEeCCCCCCCCC
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRK----KELALTSKKPGKTQLINH---FLVNKSWYIVDLPGYGFAKA 100 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~----~~~~~~~~~~~~t~~~~~---~~~~~~~~liDtpg~~~~~~ 100 (219)
.+..+.+.|+|.||+|||||+|++... .-.+.+...+|.|+.+.. +.....++++||||+.....
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCC
Confidence 356789999999999999999987643 134567788888887644 33345799999999865433
No 403
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.15 E-value=0.00018 Score=51.39 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...||.|.|+||+||||++..+...
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHH
Confidence 3579999999999999999998864
No 404
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.13 E-value=3e-05 Score=64.91 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 027757 38 DRPEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~ 61 (219)
.+..|+++|.+|+||||++..|..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 355789999999999999988864
No 405
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=3.9e-05 Score=67.92 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++++|+.|+||||++..|.+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~ 208 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAAR 208 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhh
Confidence 36899999999999999999875
No 406
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=98.08 E-value=6e-05 Score=58.95 Aligned_cols=128 Identities=16% Similarity=0.205 Sum_probs=71.7
Q ss_pred CCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCc---ccccccCCCCeeEEe------------------------eEEEe
Q 027757 31 AKDCPKDDRPEFAILGRSNVGKSSLINALVRKK---ELALTSKKPGKTQLI------------------------NHFLV 83 (219)
Q Consensus 31 ~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~---~~~~~~~~~~~t~~~------------------------~~~~~ 83 (219)
.+..+....|--+|.|.-|||||||+|.++... ..+...+..|...++ -...+
T Consensus 49 ~~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtV 128 (391)
T KOG2743|consen 49 TKSSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTV 128 (391)
T ss_pred cccCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEe
Confidence 344555667888999999999999999999653 222222222211100 00111
Q ss_pred --------------c--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH-------
Q 027757 84 --------------N--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL------- 140 (219)
Q Consensus 84 --------------~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~------- 140 (219)
. ...+++.|.|+..+ +...-....+..+...-..|++|-|+|+.+.....+.
T Consensus 129 k~~gvraie~lvqkkGkfD~IllETTGlAnP-----aPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i 203 (391)
T KOG2743|consen 129 KDNGVRAIENLVQKKGKFDHILLETTGLANP-----APIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLI 203 (391)
T ss_pred cchHHHHHHHHHhcCCCcceEEEeccCCCCc-----HHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccch
Confidence 1 24688999997532 1222122333444444447999999999852211110
Q ss_pred -HHHHHhccCCCcEEEEEEcccccccc
Q 027757 141 -DCANWLGRNNIPLTFVFTKCDKMKVA 166 (219)
Q Consensus 141 -~~~~~~~~~~~p~iiv~nK~D~~~~~ 166 (219)
+..+++. ..--+++||.|+..++
T Consensus 204 ~EA~~QiA---~AD~II~NKtDli~~e 227 (391)
T KOG2743|consen 204 NEATRQIA---LADRIIMNKTDLVSEE 227 (391)
T ss_pred HHHHHHHh---hhheeeeccccccCHH
Confidence 1112222 2336889999999864
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=2.6e-05 Score=64.78 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-+++++|+.|+||||++..|.+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988764
No 408
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.04 E-value=4.2e-05 Score=61.89 Aligned_cols=76 Identities=17% Similarity=0.151 Sum_probs=58.5
Q ss_pred cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc--cCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG--RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ 179 (219)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 179 (219)
......|.+.....+.. +|+||.|+|+.+|++....+.-+++. ..++..|+|+||+|+.+. +.++.|.
T Consensus 130 ~~s~kaY~ke~rkvve~---sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPr-------Ev~e~Wl 199 (435)
T KOG2484|consen 130 EESKKAYDKEFRKVVEA---SDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPR-------EVVEKWL 199 (435)
T ss_pred hhhHHHHHHHHHHHHhh---hheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCH-------HHHHHHH
Confidence 33444555544444444 89999999999999888877777774 345889999999999875 6889999
Q ss_pred HHHHhcCC
Q 027757 180 QLIRENYP 187 (219)
Q Consensus 180 ~~~~~~~~ 187 (219)
.++...++
T Consensus 200 ~YLr~~~p 207 (435)
T KOG2484|consen 200 VYLRREGP 207 (435)
T ss_pred HHHHhhCC
Confidence 99987665
No 409
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.03 E-value=9.1e-05 Score=62.02 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++++|++|+||||++-.|...
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~ 244 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAAR 244 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999988877653
No 410
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.02 E-value=4.7e-05 Score=62.24 Aligned_cols=116 Identities=20% Similarity=0.189 Sum_probs=63.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccc-ccccCCCC-eeEEeeE--------------------------------EEec
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKEL-ALTSKKPG-KTQLINH--------------------------------FLVN 84 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~-~~~~~~~~-~t~~~~~--------------------------------~~~~ 84 (219)
...|+++||+|+||||-+-.|... +. .......+ .|.+... ...+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar-~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAAR-YVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 567999999999999999988876 33 11111111 1111000 0113
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
.+++|+||.|.... +..-. +-.+.++..... .-+.+|++++...... .++...+....+ -=+++||.|-..
T Consensus 282 ~d~ILVDTaGrs~~--D~~~i----~el~~~~~~~~~-i~~~Lvlsat~K~~dl-kei~~~f~~~~i-~~~I~TKlDET~ 352 (407)
T COG1419 282 CDVILVDTAGRSQY--DKEKI----EELKELIDVSHS-IEVYLVLSATTKYEDL-KEIIKQFSLFPI-DGLIFTKLDETT 352 (407)
T ss_pred CCEEEEeCCCCCcc--CHHHH----HHHHHHHhcccc-ceEEEEEecCcchHHH-HHHHHHhccCCc-ceeEEEcccccC
Confidence 47899999997532 22222 223344443322 3467888887533222 234444443332 356799999664
No 411
>PRK10867 signal recognition particle protein; Provisional
Probab=98.00 E-value=0.00012 Score=61.18 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 027757 39 RPEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~ 61 (219)
+..|+++|++|+||||++-.|..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 45788999999999997766653
No 412
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.98 E-value=4e-05 Score=63.41 Aligned_cols=119 Identities=18% Similarity=0.160 Sum_probs=61.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccc------ccccC----------------CCCeeEEee----E-----EEecCeEE
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKEL------ALTSK----------------KPGKTQLIN----H-----FLVNKSWY 88 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~------~~~~~----------------~~~~t~~~~----~-----~~~~~~~~ 88 (219)
..++++|++|+||||++..|...... ...+. ..+...... . ...+..++
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 45889999999999999999853101 00110 001100000 0 00134789
Q ss_pred EEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 89 IVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 89 liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
++||||..... ...-..+..+.... ......-+++|+|++...... .......... -+--+++||.|-..
T Consensus 304 LIDTaGr~~rd--~~~l~eL~~~~~~~--~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~-~~~glIlTKLDEt~ 373 (432)
T PRK12724 304 LIDTAGYSHRN--LEQLERMQSFYSCF--GEKDSVENLLVLSSTSSYHHT-LTVLKAYESL-NYRRILLTKLDEAD 373 (432)
T ss_pred EEeCCCCCccC--HHHHHHHHHHHHhh--cCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCC-CCCEEEEEcccCCC
Confidence 99999974322 22222222222211 001124578999998653322 2333333322 34578899999654
No 413
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=0.00019 Score=58.75 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 027757 39 RPEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~ 61 (219)
...++++|+.|+||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998875
No 414
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.96 E-value=3.6e-05 Score=56.48 Aligned_cols=71 Identities=18% Similarity=0.034 Sum_probs=38.4
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHh-ccCCCcEEEEEEccccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWL-GRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~ 163 (219)
..++++||||.... +......+..+ .. ....|.+++|+|+...... .+....+ ...+ ..-+++||.|..
T Consensus 83 ~d~viiDt~g~~~~--~~~~l~~l~~l----~~-~~~~~~~~lVv~~~~~~~~--~~~~~~~~~~~~-~~~viltk~D~~ 152 (173)
T cd03115 83 FDVVIVDTAGRLQI--DENLMEELKKI----KR-VVKPDEVLLVVDAMTGQDA--VNQAKAFNEALG-ITGVILTKLDGD 152 (173)
T ss_pred CCEEEEECcccchh--hHHHHHHHHHH----Hh-hcCCCeEEEEEECCCChHH--HHHHHHHHhhCC-CCEEEEECCcCC
Confidence 35899999996421 11111111111 11 1226899999998654322 2222222 2334 467888999976
Q ss_pred cc
Q 027757 164 KV 165 (219)
Q Consensus 164 ~~ 165 (219)
..
T Consensus 153 ~~ 154 (173)
T cd03115 153 AR 154 (173)
T ss_pred CC
Confidence 54
No 415
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.95 E-value=5.5e-05 Score=53.49 Aligned_cols=105 Identities=12% Similarity=0.100 Sum_probs=57.6
Q ss_pred EEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCc
Q 027757 43 AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESL 122 (219)
Q Consensus 43 ~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (219)
..-|.+|+||||+.-.+... .........-.+.+...-..+..++++|+|+.... .....+.. +
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~-~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~~------------~~~~~l~~---a 67 (139)
T cd02038 4 VTSGKGGVGKTNISANLALA-LAKLGKRVLLLDADLGLANLDYDYIIIDTGAGISD------------NVLDFFLA---A 67 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHH-HHHCCCcEEEEECCCCCCCCCCCEEEEECCCCCCH------------HHHHHHHh---C
Confidence 34577899999998877664 11110011111111111112268899999974210 11223333 7
Q ss_pred cEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEccccc
Q 027757 123 VGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKM 163 (219)
Q Consensus 123 d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~ 163 (219)
|.++++++.+..........++++.. ...++.+|+|+++..
T Consensus 68 D~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 68 DEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 99999999875332222334444432 346788999999743
No 416
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.95 E-value=4.7e-05 Score=63.48 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=62.2
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 111 FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 111 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
+|+..++-.+.+|+||.++|+.+|.-+....+-.++++ .++..++++||.||++. +....|.+.+...+
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~-------~qr~aWa~YF~~~n-- 234 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPP-------EQRVAWAEYFRQNN-- 234 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCH-------HHHHHHHHHHHhcC--
Confidence 44444444555799999999999988877777788886 45788999999999986 56778888877644
Q ss_pred CCCeEEeecCC
Q 027757 189 HPPWIMTSSVT 199 (219)
Q Consensus 189 ~~~~~~~Sa~~ 199 (219)
+++++.||..
T Consensus 235 -i~~vf~SA~~ 244 (562)
T KOG1424|consen 235 -IPVVFFSALA 244 (562)
T ss_pred -ceEEEEeccc
Confidence 7899999987
No 417
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.94 E-value=0.00012 Score=59.37 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=71.4
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
.+|...|.-...+|++|-|+|+.+|.......+-.+++. .++.+++|+|||||.+. .-...|...+...++
T Consensus 202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPt-------wvt~~Wv~~lSkeyP 274 (572)
T KOG2423|consen 202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPT-------WVTAKWVRHLSKEYP 274 (572)
T ss_pred HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccH-------HHHHHHHHHHhhhCc
Confidence 345555555666899999999999988777666777775 66889999999999875 566778887776543
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
. -.|-.|..+..|-..|+..|.++.+
T Consensus 275 T--iAfHAsi~nsfGKgalI~llRQf~k 300 (572)
T KOG2423|consen 275 T--IAFHASINNSFGKGALIQLLRQFAK 300 (572)
T ss_pred c--eeeehhhcCccchhHHHHHHHHHHh
Confidence 2 2355565666777778777776654
No 418
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.94 E-value=0.00022 Score=59.64 Aligned_cols=71 Identities=18% Similarity=0.055 Sum_probs=37.7
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
..++++||||... .+.....+...+... . ..|.+++|+|+..+. ........+...=...=+|+||.|-..
T Consensus 183 ~DvVIIDTaGr~~--~d~~l~~eL~~i~~~----~-~p~e~lLVvda~tgq--~~~~~a~~f~~~v~i~giIlTKlD~~~ 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQ--IDEELMEELAAIKEI----L-NPDEILLVVDAMTGQ--DAVNTAKTFNERLGLTGVVLTKLDGDA 253 (428)
T ss_pred CCEEEEeCCCccc--cCHHHHHHHHHHHHh----h-CCceEEEEEeccchH--HHHHHHHHHHhhCCCCEEEEeCccCcc
Confidence 3689999999642 222222222222221 1 257899999987432 112222322221123567799999543
No 419
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.92 E-value=0.00013 Score=59.03 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=68.2
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+.++........+|+|+.|+|+.+|.+.....+-+++.. .|.++|+||+|+.+. ...+.|.+.+.... .
T Consensus 23 k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~--k~~i~vlNK~DL~~~-------~~~~~W~~~~~~~~--~ 91 (322)
T COG1161 23 KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE--KPKLLVLNKADLAPK-------EVTKKWKKYFKKEE--G 91 (322)
T ss_pred HHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc--CCcEEEEehhhcCCH-------HHHHHHHHHHHhcC--C
Confidence 344444444555899999999999988887777777774 455999999999986 45788888877655 3
Q ss_pred CCeEEeecCCCCChHHHHHHHH
Q 027757 190 PPWIMTSSVTGLGRDELLLHMS 211 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~ 211 (219)
...+.++++++.+...+...+.
T Consensus 92 ~~~~~v~~~~~~~~~~i~~~~~ 113 (322)
T COG1161 92 IKPIFVSAKSRQGGKKIRKALE 113 (322)
T ss_pred CccEEEEeecccCccchHHHHH
Confidence 5678899998888777774333
No 420
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.91 E-value=0.00012 Score=57.41 Aligned_cols=145 Identities=14% Similarity=0.231 Sum_probs=74.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc-----cccccC----------------CCCeeEEeeE-----------E--Ee
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKE-----LALTSK----------------KPGKTQLINH-----------F--LV 83 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~-----~~~~~~----------------~~~~t~~~~~-----------~--~~ 83 (219)
...+++++|++|+||||++..+...-. ....+. ..+....... . ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 346999999999999999998875410 000000 0010000000 0 01
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 163 (219)
+..++++||||.... +.... +.+. .+++..+ .+-+++|++++...... ....+.+.. -.+--+++||.|-.
T Consensus 154 ~~D~ViIDt~Gr~~~--~~~~l---~el~-~~~~~~~-~~~~~LVl~a~~~~~d~-~~~~~~f~~-~~~~~~I~TKlDet 224 (270)
T PRK06731 154 RVDYILIDTAGKNYR--ASETV---EEMI-ETMGQVE-PDYICLTLSASMKSKDM-IEIITNFKD-IHIDGIVFTKFDET 224 (270)
T ss_pred CCCEEEEECCCCCcC--CHHHH---HHHH-HHHhhhC-CCeEEEEEcCccCHHHH-HHHHHHhCC-CCCCEEEEEeecCC
Confidence 347899999996422 11112 2222 2222222 46789999987432222 233344443 23467889999976
Q ss_pred ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHH
Q 027757 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDE 205 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e 205 (219)
..-+ .+-.+....+ .|+.+++ +|.++++
T Consensus 225 ~~~G------~~l~~~~~~~------~Pi~~it--~Gq~vp~ 252 (270)
T PRK06731 225 ASSG------ELLKIPAVSS------APIVLMT--DGQDVKK 252 (270)
T ss_pred CCcc------HHHHHHHHHC------cCEEEEe--CCCCCCc
Confidence 4321 2223333322 5777776 4555553
No 421
>PRK01889 GTPase RsgA; Reviewed
Probab=97.89 E-value=2.7e-05 Score=63.76 Aligned_cols=57 Identities=32% Similarity=0.398 Sum_probs=37.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccccccc-------CCCCeeEEeeEEEecCeEEEEeCCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTS-------KKPGKTQLINHFLVNKSWYIVDLPGYGF 97 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~liDtpg~~~ 97 (219)
-+++++|.+|+|||||+|.+++.. ..... ....++.............++||||+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~-~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~ 259 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE-VQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRE 259 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc-ccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhh
Confidence 479999999999999999999863 22111 1112333333344444557889999853
No 422
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.89 E-value=0.00032 Score=57.66 Aligned_cols=164 Identities=15% Similarity=0.231 Sum_probs=87.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccc--------------cCCCCeeE---Ee-------eEEEe----cCeEE
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALT--------------SKKPGKTQ---LI-------NHFLV----NKSWY 88 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~---~~-------~~~~~----~~~~~ 88 (219)
++.+=|+++||.-+|||||+.+|...-.++.. .+..|.|. .+ ..... ..++.
T Consensus 15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR 94 (492)
T PF09547_consen 15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR 94 (492)
T ss_pred CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence 56678999999999999999999865222111 11111111 11 11112 22789
Q ss_pred EEeCCCCCC----------------CCCCcchhhhHHHH----HHHHhhccCCccEEEEEEeCCCCCCc------ccHHH
Q 027757 89 IVDLPGYGF----------------AKAPDVTRMDWSSF----TKGYFLNRESLVGVLLLIDASVPPQK------IDLDC 142 (219)
Q Consensus 89 liDtpg~~~----------------~~~~~~~~~~~~~~----~~~~~~~~~~~d~vi~v~d~~~~~~~------~~~~~ 142 (219)
++||.|+-. +.|... ..-|..- ++...+.+ ..-++++--|-+-..-. .+.+.
T Consensus 95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~-eIPF~eAAeiGT~KVI~dH-STIGiVVTTDGSi~dipRe~Y~eAEerv 172 (492)
T PF09547_consen 95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDE-EIPFEEAAEIGTRKVITDH-STIGIVVTTDGSITDIPRENYVEAEERV 172 (492)
T ss_pred EEeecceeecCccccccCCCceeecCCCCCC-CCCHHHHHhhcccceeccC-CceeEEEecCCCccCCChHHHHHHHHHH
Confidence 999999721 122211 1111100 01111111 11255555555421111 11356
Q ss_pred HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 143 ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 143 ~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
...++.-++|+++++|-.+=.. .+..++...+...++ ++++++++.+ -.-+++...|.+.
T Consensus 173 I~ELk~igKPFvillNs~~P~s--------~et~~L~~eL~ekY~--vpVlpvnc~~-l~~~DI~~Il~~v 232 (492)
T PF09547_consen 173 IEELKEIGKPFVILLNSTKPYS--------EETQELAEELEEKYD--VPVLPVNCEQ-LREEDITRILEEV 232 (492)
T ss_pred HHHHHHhCCCEEEEEeCCCCCC--------HHHHHHHHHHHHHhC--CcEEEeehHH-cCHHHHHHHHHHH
Confidence 6777788999999999987433 345666666766666 5777777654 2344444444443
No 423
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.88 E-value=0.00047 Score=58.36 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++++|+.|+||||++..|.+.
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999999864
No 424
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.87 E-value=6.1e-05 Score=59.33 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=56.5
Q ss_pred ccEEEEEEeCCCCCCcccH--HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757 122 LVGVLLLIDASVPPQKIDL--DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT 199 (219)
Q Consensus 122 ~d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 199 (219)
.|-.++|+.+.+|.-...+ +++-.....++..++++||+|+.+.+.... ++....+. ....+++.+|+++
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~-----~~~~~~y~---~~gy~v~~~s~~~ 151 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV-----KELLREYE---DIGYPVLFVSAKN 151 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH-----HHHHHHHH---hCCeeEEEecCcC
Confidence 4667888888877554432 344444557899999999999997642211 12222222 1237899999999
Q ss_pred CCChHHHHHHHHH
Q 027757 200 GLGRDELLLHMSQ 212 (219)
Q Consensus 200 ~~~v~el~~~l~~ 212 (219)
+.|++++.+++..
T Consensus 152 ~~~~~~l~~~l~~ 164 (301)
T COG1162 152 GDGLEELAELLAG 164 (301)
T ss_pred cccHHHHHHHhcC
Confidence 9999999988754
No 425
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.85 E-value=3e-05 Score=58.62 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=30.6
Q ss_pred CccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEccccc
Q 027757 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKCDKM 163 (219)
Q Consensus 121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D~~ 163 (219)
.+|.+|.|+|++...-..-.++.+...+.+ .++.+|+||.|-.
T Consensus 155 ~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 155 GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 389999999998643333234444445567 8999999999844
No 426
>PRK13695 putative NTPase; Provisional
Probab=97.85 E-value=0.00065 Score=49.88 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=42.8
Q ss_pred CccEEEEEEe---CCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757 121 SLVGVLLLID---ASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197 (219)
Q Consensus 121 ~~d~vi~v~d---~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 197 (219)
.++. +++| ..+.......+.+..+.+...|++++.||... ..+.+.+...-. ..++.+
T Consensus 96 ~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~-------------~~~~~~i~~~~~--~~i~~~-- 156 (174)
T PRK13695 96 EADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSV-------------HPFVQEIKSRPG--GRVYEL-- 156 (174)
T ss_pred CCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhh-------------HHHHHHHhccCC--cEEEEE--
Confidence 3564 6888 33333333334444444678899999998532 222333332211 355555
Q ss_pred CCCCChHHHHHHHHHHHh
Q 027757 198 VTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 198 ~~~~~v~el~~~l~~~~~ 215 (219)
+..|-+++...+.+.++
T Consensus 157 -~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 157 -TPENRDSLPFEILNRLK 173 (174)
T ss_pred -cchhhhhHHHHHHHHHh
Confidence 56678889888877654
No 427
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.85 E-value=0.00021 Score=59.02 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=61.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcc---------ccccc-C---------------CCCeeEEeeE----------EEe
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKE---------LALTS-K---------------KPGKTQLINH----------FLV 83 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~---------~~~~~-~---------------~~~~t~~~~~----------~~~ 83 (219)
...|+++|++|+||||.+..|...-. ....+ . ..+....... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 45789999999999999988875310 00000 0 0011100000 011
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC--CcEEEEEEccc
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN--IPLTFVFTKCD 161 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D 161 (219)
+..++++||+|.... + .+....+ ..++......+-+++|+|++...... .+.+..+. -+--+++||.|
T Consensus 254 ~~DlVLIDTaGr~~~--~---~~~l~el-~~~l~~~~~~~e~~LVlsat~~~~~~----~~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPK--D---FMKLAEM-KELLNACGRDAEFHLAVSSTTKTSDV----KEIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCcc--C---HHHHHHH-HHHHHhcCCCCeEEEEEcCCCCHHHH----HHHHHHhcCCCCCEEEEEecc
Confidence 347899999996532 1 1112222 22223222123589999998653322 23333322 25678899999
Q ss_pred ccc
Q 027757 162 KMK 164 (219)
Q Consensus 162 ~~~ 164 (219)
-..
T Consensus 324 et~ 326 (388)
T PRK12723 324 ETT 326 (388)
T ss_pred CCC
Confidence 654
No 428
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.78 E-value=0.00062 Score=55.05 Aligned_cols=117 Identities=12% Similarity=0.062 Sum_probs=63.4
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc-----------HHHHHHhcc----CC
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-----------LDCANWLGR----NN 150 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-----------~~~~~~~~~----~~ 150 (219)
.+.++|.+| |...+.-|-+.+.+ ++++||+++.++...... ..+.+.+-. .+
T Consensus 196 ~f~~~DvGG----------QRseRrKWihcFe~---v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~ 262 (354)
T KOG0082|consen 196 KFRMFDVGG----------QRSERKKWIHCFED---VTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN 262 (354)
T ss_pred ceEEEeCCC----------cHHHhhhHHHhhcC---CCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence 567777777 22223444555666 899999999996322221 112222221 57
Q ss_pred CcEEEEEEcccccccc--------------cCCCchHhHHHHHHHHHhcCC---CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 151 IPLTFVFTKCDKMKVA--------------KGRRPDENIKSFQQLIRENYP---HHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 151 ~p~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.++++.+||.|+-... +.....+...-+...+..... ..+-+..+.|-.-.+++.+|+.+.+.
T Consensus 263 tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~ 342 (354)
T KOG0082|consen 263 TSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT 342 (354)
T ss_pred CcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence 8999999999974321 111111111122222222221 12234455677777888888888765
Q ss_pred Hh
Q 027757 214 RN 215 (219)
Q Consensus 214 ~~ 215 (219)
..
T Consensus 343 Ii 344 (354)
T KOG0082|consen 343 II 344 (354)
T ss_pred HH
Confidence 43
No 429
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.69 E-value=0.00017 Score=42.08 Aligned_cols=40 Identities=23% Similarity=0.144 Sum_probs=23.0
Q ss_pred ccEEEEEEeCCCCCCcccH---HHHHHhcc-C-CCcEEEEEEccc
Q 027757 122 LVGVLLLIDASVPPQKIDL---DCANWLGR-N-NIPLTFVFTKCD 161 (219)
Q Consensus 122 ~d~vi~v~d~~~~~~~~~~---~~~~~~~~-~-~~p~iiv~nK~D 161 (219)
.++++|++|++......-. .+.+.++. . ++|+++|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 4789999999975444322 33333443 3 899999999998
No 430
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.67 E-value=6.1e-05 Score=66.07 Aligned_cols=127 Identities=21% Similarity=0.184 Sum_probs=75.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC----eeE---------E--------------------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPG----KTQ---------L-------------------------- 77 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~----~t~---------~-------------------------- 77 (219)
..-|.|+++|..++||||.++.+.|..+.+......+ .-. .
T Consensus 27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 3468999999999999999999999755442211110 000 0
Q ss_pred --------------eeEEEe----cCeEEEEeCCCCCCC---CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC--
Q 027757 78 --------------INHFLV----NKSWYIVDLPGYGFA---KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-- 134 (219)
Q Consensus 78 --------------~~~~~~----~~~~~liDtpg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-- 134 (219)
...... -..++++|+||+..- .........+..+...|... ...+|+.+.+.+-
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~---~~~iILav~~an~d~ 183 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEK---PNRIILAVTPANSDI 183 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccc---cchhhhhccchhhhh
Confidence 000000 114689999997542 23334555666777777766 5667777766542
Q ss_pred CCcccHHHHHHhccCCCcEEEEEEcccccccc
Q 027757 135 PQKIDLDCANWLGRNNIPLTFVFTKCDKMKVA 166 (219)
Q Consensus 135 ~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 166 (219)
.+...+.+.+.+...+...+.|++|.|+.+..
T Consensus 184 ats~alkiarevDp~g~RTigvitK~DlmdkG 215 (657)
T KOG0446|consen 184 ATSPALVVAREVDPGGSRTLEVITKFDFMDKG 215 (657)
T ss_pred hcCHHHHHHHhhCCCccchhHHhhhHHhhhcC
Confidence 12222344444444666777778888776543
No 431
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.62 E-value=0.0011 Score=51.67 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=45.5
Q ss_pred EEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc------cccCCCchHhHHHHHHHHHhc---CCCCCCeEEe
Q 027757 125 VLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK------VAKGRRPDENIKSFQQLIREN---YPHHPPWIMT 195 (219)
Q Consensus 125 vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 195 (219)
..+++|..........++...+...+.+..++.-.++... ........+.++.+...+..- +.+..+.+.+
T Consensus 69 ~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~v 148 (249)
T TIGR03574 69 YSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTI 148 (249)
T ss_pred CeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEe
Confidence 4577777653322222344445556677777776666321 111112223333443333221 1123466777
Q ss_pred ecCCCCChHHHHHHHHHHH
Q 027757 196 SSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~~ 214 (219)
........+++.+.|.+..
T Consensus 149 d~~~~~~~~ei~~~i~~~~ 167 (249)
T TIGR03574 149 DTTKKIDYNEILEEILEIS 167 (249)
T ss_pred cCCCCCCHHHHHHHHHHHh
Confidence 6644457788888887654
No 432
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.53 E-value=8.4e-05 Score=51.02 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999985
No 433
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.52 E-value=0.00029 Score=47.32 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=51.7
Q ss_pred EEE-cCCCCCHHHHHHHHhcCccccc-ccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757 43 AIL-GRSNVGKSSLINALVRKKELAL-TSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120 (219)
Q Consensus 43 ~i~-G~~g~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (219)
+++ +..|+||||+.-.|... .... ..+..-.+.+.. ....++++|||+... ......+..
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~-~~~~~~~~~~l~d~d~~---~~~D~IIiDtpp~~~------------~~~~~~l~~-- 64 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVA-LAKEAGRRVLLVDLDLQ---FGDDYVVVDLGRSLD------------EVSLAALDQ-- 64 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHH-HHhcCCCcEEEEECCCC---CCCCEEEEeCCCCcC------------HHHHHHHHH--
Confidence 443 45889999988777654 1111 111111111111 122789999998421 111223334
Q ss_pred CccEEEEEEeCCCCCCcccHHHHHHhccC----CCcEEEEEEc
Q 027757 121 SLVGVLLLIDASVPPQKIDLDCANWLGRN----NIPLTFVFTK 159 (219)
Q Consensus 121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~----~~p~iiv~nK 159 (219)
+|.++++++.+...-..-.+..+++.+. ...+.+|+|+
T Consensus 65 -aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 65 -ADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred -cCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 7999999988754333223444444432 3456777775
No 434
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00035 Score=58.43 Aligned_cols=131 Identities=20% Similarity=0.200 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccccccc-CC---------------CCeeEEeeEEEe-----------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTS-KK---------------PGKTQLINHFLV----------------- 83 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-~~---------------~~~t~~~~~~~~----------------- 83 (219)
.+..+.-++.....|||||...|..+- ...+ .. .+.|........
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kA--gIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKA--GIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhh--ceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 445678888999999999999998652 1111 11 111111111110
Q ss_pred --cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccc
Q 027757 84 --NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161 (219)
Q Consensus 84 --~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 161 (219)
+.-+.++|.||+... .+..-..++- .|+.++|+|.-++..-+...++++.-..++.-++++||.|
T Consensus 95 ~~~FLiNLIDSPGHVDF----------SSEVTAALRV---TDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~D 161 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDF----------SSEVTAALRV---TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMD 161 (842)
T ss_pred CcceeEEeccCCCcccc----------hhhhhheeEe---ccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhh
Confidence 113678899996433 2222333333 7999999999998888877778877777888889999999
Q ss_pred ccccccCCCchHhHHHHHHHH
Q 027757 162 KMKVAKGRRPDENIKSFQQLI 182 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~ 182 (219)
..--+-....++..+.+.+..
T Consensus 162 RAlLELq~~~EeLyqtf~R~V 182 (842)
T KOG0469|consen 162 RALLELQLSQEELYQTFQRIV 182 (842)
T ss_pred HHHHhhcCCHHHHHHHHHHHH
Confidence 654322222233344444443
No 435
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.50 E-value=0.00012 Score=55.37 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=17.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALV 60 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~ 60 (219)
+-.+|+||||+||||.++-..
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 456899999999999988544
No 436
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.46 E-value=0.0009 Score=46.32 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027757 42 FAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~ 62 (219)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999996
No 437
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.46 E-value=0.00029 Score=55.47 Aligned_cols=151 Identities=14% Similarity=0.138 Sum_probs=70.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCC--CCCCCC-Ccchh----hhHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG--YGFAKA-PDVTR----MDWSSFT 112 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg--~~~~~~-~~~~~----~~~~~~~ 112 (219)
+-|+++|-|++||||+.+.|... +.. .+..+.+++... +....+ +...+ ..+.+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~-~~~----------------~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v 64 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY-LEE----------------KGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAV 64 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH-HHH----------------TT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH-HHh----------------cCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHH
Confidence 45899999999999999999985 222 111222333211 111111 11111 1112222
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc----ccC----CCchHhHHHHHHHHHh
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV----AKG----RRPDENIKSFQQLIRE 184 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~----~~~----~~~~~~~~~~~~~~~~ 184 (219)
+..+.. + .|+++|..+.-....-++....+..+.+..+|...+++... ..+ .+.++.+..+...+..
T Consensus 65 ~r~ls~----~-~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~ 139 (270)
T PF08433_consen 65 ERALSK----D-TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEE 139 (270)
T ss_dssp HHHHTT------SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---
T ss_pred HHhhcc----C-eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcC
Confidence 222222 3 46678887765555445666666789999999999885321 112 2455666666666644
Q ss_pred c---CCCCCCeEEee-cCCCCChHHHHHHHHH
Q 027757 185 N---YPHHPPWIMTS-SVTGLGRDELLLHMSQ 212 (219)
Q Consensus 185 ~---~~~~~~~~~~S-a~~~~~v~el~~~l~~ 212 (219)
= ..++.|.|.+. .-....++++++.|..
T Consensus 140 P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~~ 171 (270)
T PF08433_consen 140 PDPKNRWDSPLFTIDSSDEELPLEEIWNALFE 171 (270)
T ss_dssp TTSS-GGGS-SEEEE-TTS---HHHHHHHHHH
T ss_pred CCCCCCccCCeEEEecCCCCCCHHHHHHHHHh
Confidence 1 12345677777 5556678888888743
No 438
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.43 E-value=0.00012 Score=53.49 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
--+++|+|++|+|||||+|.+.|=
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhc
Confidence 347999999999999999999983
No 439
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00012 Score=55.92 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-|+|+|++|+|||||++.+.|-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 440
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.41 E-value=0.00014 Score=54.03 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=26.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~ 77 (219)
..-|+|+|++|+|||||+++|+.. ........+.||+.
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~-~~~~~~~v~~TTR~ 41 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEE-HPDFLFSISCTTRA 41 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc-CCccccccCccCCC
Confidence 345899999999999999999986 33222333444443
No 441
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.40 E-value=7.8e-05 Score=54.52 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc
Q 027757 40 PEFAILGRSNVGKSSLINALVRKK 63 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~ 63 (219)
.-++|.||+|+||||++++|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 358899999999999999999973
No 442
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.38 E-value=0.00014 Score=55.20 Aligned_cols=22 Identities=45% Similarity=0.489 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-|+|+|++|||||||+|.+-+-
T Consensus 33 ~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999999885
No 443
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.00015 Score=53.50 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+|+|+|+|||||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999986
No 444
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.37 E-value=0.0002 Score=42.83 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
..+|.|+.|+||||++.++.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 445
>PRK07261 topology modulation protein; Provisional
Probab=97.36 E-value=0.00016 Score=53.00 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+|+|+|++|+|||||...|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998764
No 446
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.36 E-value=0.00024 Score=50.11 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027757 42 FAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~ 62 (219)
|+|+|++|+|||||++.|.+.
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999985
No 447
>PRK08118 topology modulation protein; Reviewed
Probab=97.34 E-value=0.00019 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+|+|+|++|+|||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999976
No 448
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.0012 Score=53.54 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=21.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..+--|.++|-.|+||||.|-.+...
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y 124 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYY 124 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHH
Confidence 44556889999999999999888753
No 449
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.28 E-value=0.00026 Score=43.59 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027757 42 FAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~ 62 (219)
|++.|++|+||||+.++|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999985
No 450
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.25 E-value=0.00027 Score=49.57 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+++.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 36899999999999999999996
No 451
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.22 E-value=0.0016 Score=42.32 Aligned_cols=71 Identities=20% Similarity=0.228 Sum_probs=42.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCC
Q 027757 42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRES 121 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (219)
+++.|..|+||||+...+... ... ..... ...+ .+.++|+++....... ....... .
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~--l~~-~g~~v-------~~~~-d~iivD~~~~~~~~~~---------~~~~~~~---~ 58 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAA--LAK-RGKRV-------LLID-DYVLIDTPPGLGLLVL---------LCLLALL---A 58 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHH-CCCeE-------EEEC-CEEEEeCCCCccchhh---------hhhhhhh---h
Confidence 678899999999999998875 221 11110 1111 7889999985321100 0012222 2
Q ss_pred ccEEEEEEeCCCCC
Q 027757 122 LVGVLLLIDASVPP 135 (219)
Q Consensus 122 ~d~vi~v~d~~~~~ 135 (219)
+|.++++++.....
T Consensus 59 ~~~vi~v~~~~~~~ 72 (99)
T cd01983 59 ADLVIIVTTPEALA 72 (99)
T ss_pred CCEEEEecCCchhh
Confidence 78899999887543
No 452
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.20 E-value=0.00051 Score=50.61 Aligned_cols=22 Identities=45% Similarity=0.653 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.|+|+|++|+|||||++.|.+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 5899999999999999999985
No 453
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.0019 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCc
Q 027757 40 PEFAILGRSNVGKSSLINALVRKK 63 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~ 63 (219)
.-|.++|.-|+|||||++.|.++.
T Consensus 189 ~VIgvlG~QgsGKStllslLaans 212 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAANS 212 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhccC
Confidence 468899999999999999999874
No 454
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.20 E-value=0.00031 Score=49.58 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027757 42 FAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~ 62 (219)
|+++|++|+|||||+..+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 455
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.18 E-value=0.0017 Score=47.63 Aligned_cols=64 Identities=9% Similarity=-0.005 Sum_probs=39.4
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-cEEEEEEcccccc
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-PLTFVFTKCDKMK 164 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~ 164 (219)
.++++|||+-... .....+.. +|.+|++++++...-..-....+++...+. ...+|+|++|...
T Consensus 64 d~viiD~p~~~~~------------~~~~~l~~---ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 64 DYILIDSPAGIER------------GFITAIAP---ADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred CEEEEECCCCCcH------------HHHHHHHh---CCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 7899999873211 11222333 799999998876433322344555555443 4679999998653
No 456
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.17 E-value=0.00036 Score=49.38 Aligned_cols=23 Identities=35% Similarity=0.702 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+.|.|+|+.|+|||||+..|+..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999885
No 457
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.14 E-value=0.00027 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=18.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
||+|.|.+|+|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999975
No 458
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.11 E-value=0.0006 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|+|++|+|||||+++|...
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 345788999999999999999864
No 459
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.09 E-value=0.00045 Score=51.36 Aligned_cols=22 Identities=36% Similarity=0.533 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6899999999999999999875
No 460
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.09 E-value=0.00051 Score=51.57 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
=.++|+||+|+|||||+..+.+-
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 37899999999999999999885
No 461
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.09 E-value=0.0019 Score=42.96 Aligned_cols=71 Identities=21% Similarity=0.167 Sum_probs=41.3
Q ss_pred EEEEc-CCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757 42 FAILG-RSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120 (219)
Q Consensus 42 v~i~G-~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (219)
|.+.| ..|+||||+.-.+... ... ......-.+.. ....++++|+|+... ......+..
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~--~~~-~~~~vl~~d~d---~~~d~viiD~p~~~~------------~~~~~~l~~-- 61 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAA--LAR-RGKRVLLIDLD---PQYDYIIIDTPPSLG------------LLTRNALAA-- 61 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHH--HHh-CCCcEEEEeCC---CCCCEEEEeCcCCCC------------HHHHHHHHH--
Confidence 56666 4799999998888764 222 11111111111 115789999998431 111233333
Q ss_pred CccEEEEEEeCCC
Q 027757 121 SLVGVLLLIDASV 133 (219)
Q Consensus 121 ~~d~vi~v~d~~~ 133 (219)
+|.++++++.+.
T Consensus 62 -ad~viv~~~~~~ 73 (104)
T cd02042 62 -ADLVLIPVQPSP 73 (104)
T ss_pred -CCEEEEeccCCH
Confidence 799999998764
No 462
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.08 E-value=0.0005 Score=46.06 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALV 60 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~ 60 (219)
-.++|+|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 358999999999999999986
No 463
>PRK14530 adenylate kinase; Provisional
Probab=97.07 E-value=0.00058 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+|++|+||||+.+.|...
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 464
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.06 E-value=0.0005 Score=47.42 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027757 42 FAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~ 62 (219)
|+|.|.+|+||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999986
No 465
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.00051 Score=48.40 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|+|.|.||+|||||.+++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 45789999999999999999999865
No 466
>PRK06217 hypothetical protein; Validated
Probab=97.04 E-value=0.00057 Score=50.64 Aligned_cols=22 Identities=32% Similarity=0.447 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+|+|+|.+|+||||+..+|...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999976
No 467
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.03 E-value=0.0006 Score=51.57 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|+|++|+|||||++.+.+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999975
No 468
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.02 E-value=0.00054 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 469
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.00053 Score=55.32 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-++++||+|||||||++.+.|-
T Consensus 31 f~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999986
No 470
>PRK08233 hypothetical protein; Provisional
Probab=96.99 E-value=0.00075 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|.|.+|+|||||.++|...
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 56889999999999999999985
No 471
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.00062 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-|+++|++|+|||||+|.+.|-
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 5889999999999999999983
No 472
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.99 E-value=0.00086 Score=46.49 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++|+|++|+||||++..+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhc
Confidence 57899999999999999999986
No 473
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.99 E-value=0.00064 Score=50.10 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
--.++|+|+.|+|||||++.+.|.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 347999999999999999999995
No 474
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.99 E-value=0.00083 Score=49.14 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..+-+.|+|.+|+|||||++++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3457899999999999999999985
No 475
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.98 E-value=0.00077 Score=49.91 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 027757 39 RPEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~ 61 (219)
.+.|+++|++|+||||+++.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999984
No 476
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.98 E-value=0.0038 Score=47.58 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=52.3
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEE
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFT 158 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~n 158 (219)
..++++||.|... .+....+.. +|.||+=.-.+..+-..-.+..+++. ..++|.-+++|
T Consensus 84 ~d~VlvDleG~as------------~~~~~aia~---sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~T 148 (231)
T PF07015_consen 84 FDFVLVDLEGGAS------------ELNDYAIAR---SDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFT 148 (231)
T ss_pred CCEEEEeCCCCCc------------hhHHHHHHH---CCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEe
Confidence 3689999999642 122333333 78777655544322222223334443 36789999999
Q ss_pred cccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHH
Q 027757 159 KCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL 208 (219)
Q Consensus 159 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~ 208 (219)
++.-... ........++.. ..|+|.+.-.+...+.+++.
T Consensus 149 r~~~~~~-------~~~~~~~~e~~~----~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 149 RVPAARL-------TRAQRIISEQLE----SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred cCCcchh-------hHHHHHHHHHHh----cCCccccccccHHHHHHHHH
Confidence 9873311 112222222211 15777777666555555544
No 477
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.97 E-value=0.00073 Score=50.24 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-.++|+|++|+|||||++.+++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999985
No 478
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.96 E-value=0.00074 Score=51.13 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
....|+|.|++|+|||||++.|.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999985
No 479
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.95 E-value=0.0052 Score=58.04 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||+.+++|.
T Consensus 548 ~lvaVvG~vGsGKSSLL~AiLGE 570 (1381)
T KOG0054|consen 548 QLVAVVGPVGSGKSSLLSAILGE 570 (1381)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999996
No 480
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.95 E-value=0.00067 Score=50.89 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027757 42 FAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~ 62 (219)
|+|.|++|+|||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999885
No 481
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.94 E-value=0.0091 Score=49.46 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..+..|+++|--|+||||.+-.|...
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~ 123 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKY 123 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHH
Confidence 34567999999999999998877753
No 482
>PRK03839 putative kinase; Provisional
Probab=96.94 E-value=0.00075 Score=49.81 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+|+|+|++|+||||+..+|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999876
No 483
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.93 E-value=0.00083 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 027757 40 PEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~ 61 (219)
-.++|+|+.|+|||||++.+++
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4799999999999999998863
No 484
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.93 E-value=0.00081 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|.
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999995
No 485
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.92 E-value=0.00082 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|.
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999995
No 486
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.91 E-value=0.00085 Score=51.07 Aligned_cols=23 Identities=43% Similarity=0.466 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|.
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 37999999999999999999996
No 487
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.91 E-value=0.00085 Score=51.73 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|.
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999995
No 488
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.91 E-value=0.00087 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999995
No 489
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.90 E-value=0.004 Score=49.81 Aligned_cols=151 Identities=18% Similarity=0.129 Sum_probs=77.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccc-------------------------------cccCCCCeeEEeeE------
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELA-------------------------------LTSKKPGKTQLINH------ 80 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~-------------------------------~~~~~~~~t~~~~~------ 80 (219)
.+.-++++|--|+||||-+-.|...- .. .+....|.+.....
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l-~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYL-KQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHH-HHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 36678999999999999998887541 10 00000111110000
Q ss_pred -EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC-CccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEE
Q 027757 81 -FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE-SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFT 158 (219)
Q Consensus 81 -~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~n 158 (219)
...+..++++||.|-..... ....+..++.+-.-.... ..+-+++++|++-+.... ...+.+.+.-.-.-+++|
T Consensus 217 Akar~~DvvliDTAGRLhnk~--nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal--~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKK--NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL--SQAKIFNEAVGLDGIILT 292 (340)
T ss_pred HHHcCCCEEEEeCcccccCch--hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH--HHHHHHHHhcCCceEEEE
Confidence 01134789999999532322 222222333332111110 123488888998765442 223334432223467899
Q ss_pred cccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHH
Q 027757 159 KCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207 (219)
Q Consensus 159 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~ 207 (219)
|+|-....+ .+-.+.+.++ .|+.++- -|.++++|.
T Consensus 293 KlDgtAKGG------~il~I~~~l~------~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 293 KLDGTAKGG------IILSIAYELG------IPIKFIG--VGEGYDDLR 327 (340)
T ss_pred ecccCCCcc------eeeeHHHHhC------CCEEEEe--CCCChhhcc
Confidence 999543322 2233444444 5888875 345555553
No 490
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.89 E-value=0.00074 Score=51.62 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027757 42 FAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~ 62 (219)
|+|.|++|||||||++.|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHH
Confidence 789999999999999999985
No 491
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.88 E-value=0.00083 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-|+|+|++|+||||+++++++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~ 24 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY 24 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998875
No 492
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.87 E-value=0.00098 Score=49.64 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|.
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 493
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.87 E-value=0.00098 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|.
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999995
No 494
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0009 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.578 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
No 495
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.86 E-value=0.001 Score=50.19 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|.
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999996
No 496
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.86 E-value=0.001 Score=50.52 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|.
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999995
No 497
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.86 E-value=0.001 Score=47.27 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 36899999999999999999996
No 498
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.0011 Score=48.94 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999999985
No 499
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.001 Score=50.69 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|.
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999995
No 500
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.00098 Score=50.70 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-|+|+|++|||||||+..+.+.
T Consensus 32 ~VaiIG~SGaGKSTLLR~lngl 53 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNGL 53 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 6899999999999999999984
Done!