Query 027757
Match_columns 219
No_of_seqs 116 out of 1648
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 01:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027757.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027757hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pqc_A Probable GTP-binding pr 100.0 1.9E-31 6.6E-36 198.4 18.5 192 19-216 3-194 (195)
2 1svi_A GTP-binding protein YSX 100.0 8.2E-31 2.8E-35 195.3 19.9 192 19-215 3-194 (195)
3 4dhe_A Probable GTP-binding pr 100.0 1.5E-30 5.2E-35 197.9 15.2 197 17-216 7-211 (223)
4 4dkx_A RAS-related protein RAB 99.9 2.3E-27 8E-32 179.5 13.0 155 38-215 12-175 (216)
5 3iev_A GTP-binding protein ERA 99.9 1.5E-25 5.1E-30 178.4 18.0 170 36-215 7-181 (308)
6 2il1_A RAB12; G-protein, GDP, 99.9 1.8E-25 6.2E-30 166.2 15.3 160 37-216 24-190 (192)
7 2p5s_A RAS and EF-hand domain 99.9 1.7E-25 5.7E-30 167.3 15.0 168 30-216 19-197 (199)
8 1z0f_A RAB14, member RAS oncog 99.9 6.2E-25 2.1E-29 160.9 15.9 158 37-215 13-177 (179)
9 1kao_A RAP2A; GTP-binding prot 99.9 7.2E-25 2.5E-29 158.6 15.1 156 39-216 3-166 (167)
10 3q72_A GTP-binding protein RAD 99.9 3.3E-25 1.1E-29 160.6 13.3 157 39-217 2-165 (166)
11 1u8z_A RAS-related protein RAL 99.9 1.3E-24 4.4E-29 157.4 16.4 156 39-216 4-167 (168)
12 3tkl_A RAS-related protein RAB 99.9 1.1E-24 3.9E-29 162.0 16.1 160 37-217 14-180 (196)
13 2bov_A RAla, RAS-related prote 99.9 1.6E-24 5.4E-29 162.5 16.9 160 35-216 10-177 (206)
14 3reg_A RHO-like small GTPase; 99.9 1.9E-25 6.4E-30 166.3 11.5 161 37-216 21-188 (194)
15 1ek0_A Protein (GTP-binding pr 99.9 7E-25 2.4E-29 159.2 14.3 155 39-214 3-167 (170)
16 2nzj_A GTP-binding protein REM 99.9 9.6E-25 3.3E-29 159.4 15.1 160 38-217 3-170 (175)
17 2ew1_A RAS-related protein RAB 99.9 2E-24 6.8E-29 161.9 17.1 159 37-216 24-189 (201)
18 2fn4_A P23, RAS-related protei 99.9 1.3E-24 4.3E-29 159.5 15.2 160 36-217 6-173 (181)
19 2hup_A RAS-related protein RAB 99.9 1.3E-24 4.6E-29 162.7 15.6 159 37-216 27-193 (201)
20 3kkq_A RAS-related protein M-R 99.9 2.1E-24 7.1E-29 158.9 16.0 158 37-216 16-182 (183)
21 2bme_A RAB4A, RAS-related prot 99.9 2E-24 6.8E-29 159.4 15.9 159 37-216 8-173 (186)
22 2iwr_A Centaurin gamma 1; ANK 99.9 1.6E-24 5.6E-29 158.8 15.1 155 37-216 5-169 (178)
23 1g16_A RAS-related protein SEC 99.9 9.9E-25 3.4E-29 158.5 13.6 157 39-217 3-166 (170)
24 3tw8_B RAS-related protein RAB 99.9 6.6E-25 2.3E-29 161.0 12.8 158 37-217 7-172 (181)
25 1wms_A RAB-9, RAB9, RAS-relate 99.9 2.7E-24 9.2E-29 157.4 15.9 159 37-216 5-174 (177)
26 2a9k_A RAS-related protein RAL 99.9 2.5E-24 8.4E-29 158.7 15.8 158 37-216 16-181 (187)
27 1z0j_A RAB-22, RAS-related pro 99.9 1.7E-24 5.9E-29 157.2 14.7 155 39-214 6-167 (170)
28 3bc1_A RAS-related protein RAB 99.9 4.3E-24 1.5E-28 158.4 17.1 159 37-216 9-185 (195)
29 2a5j_A RAS-related protein RAB 99.9 1.6E-24 5.4E-29 160.9 14.6 159 37-216 19-184 (191)
30 1c1y_A RAS-related protein RAP 99.9 1.3E-24 4.5E-29 157.4 13.8 156 39-215 3-166 (167)
31 1z06_A RAS-related protein RAB 99.9 2E-24 6.8E-29 160.1 15.0 158 37-215 18-187 (189)
32 1zbd_A Rabphilin-3A; G protein 99.9 3.6E-24 1.2E-28 160.3 16.5 157 38-215 7-170 (203)
33 2hxs_A RAB-26, RAS-related pro 99.9 9.1E-25 3.1E-29 160.0 12.9 158 38-216 5-173 (178)
34 3dz8_A RAS-related protein RAB 99.9 6.7E-25 2.3E-29 162.9 12.3 160 37-217 21-187 (191)
35 2qu8_A Putative nucleolar GTP- 99.9 1.3E-23 4.5E-28 160.3 19.7 171 37-216 27-205 (228)
36 3ihw_A Centg3; RAS, centaurin, 99.9 3.4E-24 1.2E-28 158.4 15.9 160 34-218 15-182 (184)
37 2gf9_A RAS-related protein RAB 99.9 1.4E-24 4.9E-29 160.8 13.9 159 37-216 20-185 (189)
38 4bas_A ADP-ribosylation factor 99.9 1.1E-24 3.7E-29 162.5 13.0 167 33-217 11-190 (199)
39 2fg5_A RAB-22B, RAS-related pr 99.9 1.4E-24 4.7E-29 161.4 13.6 156 37-215 21-185 (192)
40 3clv_A RAB5 protein, putative; 99.9 3E-24 1E-28 160.5 15.3 158 37-216 5-204 (208)
41 3t5g_A GTP-binding protein RHE 99.9 2.8E-25 9.7E-30 163.3 9.4 159 37-217 4-170 (181)
42 3q85_A GTP-binding protein REM 99.9 2.5E-24 8.5E-29 156.4 14.3 159 39-217 2-168 (169)
43 1r2q_A RAS-related protein RAB 99.9 2.5E-24 8.7E-29 156.2 14.3 155 39-214 6-167 (170)
44 2g6b_A RAS-related protein RAB 99.9 6.3E-24 2.2E-28 155.8 16.4 160 37-217 8-175 (180)
45 3q3j_B RHO-related GTP-binding 99.9 6.1E-25 2.1E-29 166.2 11.2 163 35-216 23-203 (214)
46 2erx_A GTP-binding protein DI- 99.9 2.9E-24 1E-28 156.2 14.4 156 39-216 3-167 (172)
47 1ky3_A GTP-binding protein YPT 99.9 1.5E-24 5.1E-29 159.2 13.0 162 37-217 6-179 (182)
48 1z08_A RAS-related protein RAB 99.9 1.3E-24 4.4E-29 157.9 12.3 155 38-215 5-168 (170)
49 2efe_B Small GTP-binding prote 99.9 2E-24 7E-29 158.6 13.4 159 37-216 10-175 (181)
50 2bcg_Y Protein YP2, GTP-bindin 99.9 2.3E-24 7.7E-29 161.9 13.8 160 37-217 6-172 (206)
51 1z2a_A RAS-related protein RAB 99.9 1.7E-24 5.8E-29 157.0 12.7 157 38-215 4-166 (168)
52 4dsu_A GTPase KRAS, isoform 2B 99.9 4.4E-24 1.5E-28 157.7 15.0 155 39-216 4-166 (189)
53 2f7s_A C25KG, RAS-related prot 99.9 3.8E-24 1.3E-28 161.9 15.0 157 37-216 23-199 (217)
54 2atv_A RERG, RAS-like estrogen 99.9 9.6E-24 3.3E-28 157.3 16.9 159 36-217 25-192 (196)
55 2y8e_A RAB-protein 6, GH09086P 99.9 3.1E-24 1.1E-28 157.1 14.0 158 38-216 13-177 (179)
56 1fzq_A ADP-ribosylation factor 99.9 3.1E-24 1E-28 158.2 13.7 159 37-217 14-179 (181)
57 2cxx_A Probable GTP-binding pr 99.9 1.6E-23 5.3E-28 155.0 17.4 170 40-217 2-185 (190)
58 2oil_A CATX-8, RAS-related pro 99.9 4.8E-24 1.7E-28 158.4 14.5 159 37-216 23-188 (193)
59 3cph_A RAS-related protein SEC 99.9 5.8E-24 2E-28 160.2 15.1 158 37-216 18-182 (213)
60 2lkc_A Translation initiation 99.9 9.8E-25 3.3E-29 159.9 10.5 164 37-218 6-173 (178)
61 2dyk_A GTP-binding protein; GT 99.9 1.9E-24 6.5E-29 155.7 11.5 156 40-214 2-160 (161)
62 2j1l_A RHO-related GTP-binding 99.9 4.1E-24 1.4E-28 161.6 13.7 162 36-216 31-209 (214)
63 3oes_A GTPase rhebl1; small GT 99.9 6.7E-25 2.3E-29 164.3 9.3 164 32-217 17-188 (201)
64 1zd9_A ADP-ribosylation factor 99.9 3.9E-24 1.3E-28 158.4 13.3 161 37-218 20-187 (188)
65 2h57_A ADP-ribosylation factor 99.9 2.1E-24 7.2E-29 160.1 11.6 160 37-218 19-189 (190)
66 2atx_A Small GTP binding prote 99.9 1.4E-24 4.9E-29 161.4 10.7 159 37-214 16-191 (194)
67 1x3s_A RAS-related protein RAB 99.9 9.2E-24 3.1E-28 156.8 14.9 156 39-216 15-178 (195)
68 3cbq_A GTP-binding protein REM 99.9 1.1E-23 3.6E-28 157.1 15.1 161 36-216 20-188 (195)
69 1upt_A ARL1, ADP-ribosylation 99.9 1.2E-23 4.3E-28 152.9 15.1 156 38-216 6-169 (171)
70 3con_A GTPase NRAS; structural 99.9 2.1E-23 7.2E-28 154.5 16.3 157 38-217 20-184 (190)
71 2gf0_A GTP-binding protein DI- 99.9 1.3E-23 4.4E-28 156.6 15.2 157 37-216 6-171 (199)
72 2o52_A RAS-related protein RAB 99.9 5.7E-24 2E-28 159.1 13.3 158 37-215 23-187 (200)
73 2ce2_X GTPase HRAS; signaling 99.9 2.5E-23 8.7E-28 150.1 16.3 154 39-215 3-164 (166)
74 4dcu_A GTP-binding protein ENG 99.9 1.2E-23 4E-28 175.9 16.1 172 37-217 193-370 (456)
75 2fu5_C RAS-related protein RAB 99.9 1.7E-24 6E-29 159.4 9.7 156 38-216 7-171 (183)
76 2q3h_A RAS homolog gene family 99.9 4.2E-24 1.4E-28 159.7 11.9 162 36-216 17-195 (201)
77 3cpj_B GTP-binding protein YPT 99.9 3.1E-24 1.1E-28 163.2 11.2 159 37-216 11-176 (223)
78 1wf3_A GTP-binding protein; GT 99.9 1.6E-23 5.5E-28 165.9 15.3 160 39-214 7-171 (301)
79 1ksh_A ARF-like protein 2; sma 99.9 1.2E-23 4.1E-28 155.3 13.5 158 37-216 16-180 (186)
80 4djt_A GTP-binding nuclear pro 99.9 1.1E-24 3.9E-29 164.9 8.2 160 37-217 9-176 (218)
81 3iby_A Ferrous iron transport 99.9 1.3E-23 4.3E-28 163.0 14.2 160 40-213 2-164 (256)
82 2wji_A Ferrous iron transport 99.9 3.7E-23 1.3E-27 150.1 15.3 159 39-215 3-164 (165)
83 1r8s_A ADP-ribosylation factor 99.9 2.7E-23 9.3E-28 150.2 14.6 154 40-216 1-162 (164)
84 4gzl_A RAS-related C3 botulinu 99.9 2E-24 6.9E-29 162.1 8.8 159 37-213 28-202 (204)
85 1vg8_A RAS-related protein RAB 99.9 8.5E-24 2.9E-28 158.6 12.2 158 37-215 6-174 (207)
86 1mh1_A RAC1; GTP-binding, GTPa 99.9 4.1E-24 1.4E-28 157.5 10.1 158 39-215 5-179 (186)
87 3t1o_A Gliding protein MGLA; G 99.9 2.3E-24 7.8E-29 160.3 8.7 157 37-217 12-193 (198)
88 1zj6_A ADP-ribosylation factor 99.9 3E-23 1E-27 153.5 14.6 158 37-216 14-178 (187)
89 3bwd_D RAC-like GTP-binding pr 99.9 2.3E-24 7.8E-29 158.4 8.2 160 37-214 6-179 (182)
90 2j0v_A RAC-like GTP-binding pr 99.9 3.5E-24 1.2E-28 161.5 9.4 161 37-216 7-180 (212)
91 3c5c_A RAS-like protein 12; GD 99.9 1.4E-23 4.9E-28 155.3 12.5 156 37-215 19-185 (187)
92 2hjg_A GTP-binding protein ENG 99.9 1.4E-23 4.9E-28 174.4 13.9 172 37-217 173-350 (436)
93 2gco_A H9, RHO-related GTP-bin 99.9 5.5E-24 1.9E-28 159.3 10.0 160 37-215 23-199 (201)
94 1m7b_A RND3/RHOE small GTP-bin 99.9 5E-24 1.7E-28 157.3 9.3 160 37-215 5-182 (184)
95 3a1s_A Iron(II) transport prot 99.9 9.9E-23 3.4E-27 158.2 16.4 159 39-215 5-166 (258)
96 3gj0_A GTP-binding nuclear pro 99.9 4.2E-24 1.4E-28 162.2 8.3 156 35-215 11-174 (221)
97 2h17_A ADP-ribosylation factor 99.9 1.5E-23 5.1E-28 154.3 11.0 155 36-212 18-179 (181)
98 2yc2_C IFT27, small RAB-relate 99.9 3.6E-24 1.2E-28 160.6 7.5 159 37-215 18-191 (208)
99 1f6b_A SAR1; gtpases, N-termin 99.9 8E-24 2.7E-28 158.2 9.3 156 38-213 24-196 (198)
100 2b6h_A ADP-ribosylation factor 99.9 3.3E-23 1.1E-27 154.1 12.4 163 30-215 20-190 (192)
101 1m2o_B GTP-binding protein SAR 99.9 1.4E-23 4.7E-28 155.9 10.3 153 38-213 22-189 (190)
102 2fh5_B SR-beta, signal recogni 99.9 1E-22 3.4E-27 153.7 15.2 157 37-213 5-213 (214)
103 2fv8_A H6, RHO-related GTP-bin 99.9 1.6E-23 5.4E-28 157.5 10.1 159 38-215 24-199 (207)
104 1gwn_A RHO-related GTP-binding 99.9 1.6E-23 5.4E-28 157.4 9.8 160 37-215 26-203 (205)
105 2g3y_A GTP-binding protein GEM 99.9 2.3E-22 7.7E-27 151.7 15.4 160 37-216 35-203 (211)
106 1moz_A ARL1, ADP-ribosylation 99.9 4E-23 1.4E-27 152.0 10.8 158 37-217 16-181 (183)
107 1pui_A ENGB, probable GTP-bind 99.9 3E-22 1E-26 150.6 15.8 179 34-216 21-199 (210)
108 3i8s_A Ferrous iron transport 99.9 4.7E-23 1.6E-27 161.4 11.4 162 39-214 3-167 (274)
109 2x77_A ADP-ribosylation factor 99.9 4.7E-23 1.6E-27 152.6 10.2 159 37-217 20-185 (189)
110 3llu_A RAS-related GTP-binding 99.9 5.2E-23 1.8E-27 153.4 10.3 167 32-213 13-194 (196)
111 2wjg_A FEOB, ferrous iron tran 99.9 5.9E-22 2E-26 146.4 15.8 162 38-217 6-170 (188)
112 3b1v_A Ferrous iron uptake tra 99.9 1.8E-22 6.1E-27 157.7 13.5 159 39-215 3-163 (272)
113 3k53_A Ferrous iron transport 99.9 6.9E-22 2.4E-26 154.6 16.6 160 39-216 3-166 (271)
114 1mky_A Probable GTP-binding pr 99.9 4.9E-22 1.7E-26 165.4 16.6 161 40-215 2-165 (439)
115 2gj8_A MNME, tRNA modification 99.9 4.8E-22 1.6E-26 145.2 13.4 156 39-215 4-165 (172)
116 2hjg_A GTP-binding protein ENG 99.9 4.5E-22 1.5E-26 165.5 14.9 159 39-215 3-164 (436)
117 1lnz_A SPO0B-associated GTP-bi 99.9 1.1E-22 3.8E-27 163.4 9.7 187 13-217 118-331 (342)
118 3o47_A ADP-ribosylation factor 99.9 6.6E-22 2.3E-26 158.7 13.8 157 37-216 163-327 (329)
119 3th5_A RAS-related C3 botulinu 99.8 3.4E-24 1.1E-28 160.7 0.0 160 36-213 27-202 (204)
120 3l0i_B RAS-related protein RAB 99.9 6E-25 2.1E-29 164.3 -4.6 159 37-216 31-196 (199)
121 4dcu_A GTP-binding protein ENG 99.9 5.1E-22 1.8E-26 166.0 12.4 167 31-215 15-184 (456)
122 2cjw_A GTP-binding protein GEM 99.9 1.9E-21 6.4E-26 144.6 12.6 156 39-215 6-171 (192)
123 1mky_A Probable GTP-binding pr 99.9 3.7E-21 1.3E-25 160.1 15.7 172 37-217 178-356 (439)
124 2zej_A Dardarin, leucine-rich 99.9 3E-21 1E-25 142.4 13.1 159 39-217 2-179 (184)
125 1xzp_A Probable tRNA modificat 99.9 2.2E-21 7.4E-26 162.3 12.9 156 40-214 244-403 (482)
126 3t5d_A Septin-7; GTP-binding p 99.9 1.8E-21 6.2E-26 152.5 11.7 167 36-213 5-201 (274)
127 3gee_A MNME, tRNA modification 99.9 3.4E-21 1.2E-25 161.0 13.8 157 39-215 233-397 (476)
128 2wkq_A NPH1-1, RAS-related C3 99.9 9.4E-22 3.2E-26 157.7 9.9 159 38-215 154-329 (332)
129 3qq5_A Small GTP-binding prote 99.9 7.2E-22 2.5E-26 162.6 8.9 163 33-214 28-194 (423)
130 3r7w_A Gtpase1, GTP-binding pr 99.9 1.8E-21 6.1E-26 154.8 10.8 164 39-212 3-177 (307)
131 1ega_A Protein (GTP-binding pr 99.9 8.5E-21 2.9E-25 150.4 14.4 161 40-213 9-172 (301)
132 3lvq_E ARF-GAP with SH3 domain 99.9 2.3E-21 7.8E-26 163.8 11.0 158 37-217 320-485 (497)
133 3c5h_A Glucocorticoid receptor 99.9 5E-21 1.7E-25 148.4 12.1 171 36-215 16-254 (255)
134 3sjy_A Translation initiation 99.8 2.3E-20 7.8E-25 153.7 15.9 162 36-214 5-190 (403)
135 2e87_A Hypothetical protein PH 99.8 1.3E-19 4.5E-24 146.9 20.1 164 37-216 165-336 (357)
136 1s0u_A EIF-2-gamma, translatio 99.8 4.5E-20 1.5E-24 152.2 17.5 161 37-214 6-196 (408)
137 2aka_B Dynamin-1; fusion prote 99.8 1.1E-20 3.8E-25 149.6 12.9 170 36-214 23-251 (299)
138 3geh_A MNME, tRNA modification 99.8 9E-21 3.1E-25 157.9 12.3 157 39-216 224-384 (462)
139 3lxw_A GTPase IMAP family memb 99.8 6E-21 2E-25 147.3 10.1 172 37-216 19-208 (247)
140 1wb1_A Translation elongation 99.8 1.2E-20 4E-25 158.4 12.7 163 37-215 17-188 (482)
141 3lxx_A GTPase IMAP family memb 99.8 2E-20 6.8E-25 143.7 12.6 175 33-216 23-214 (239)
142 2xtp_A GTPase IMAP family memb 99.8 8.5E-21 2.9E-25 147.5 10.6 173 36-216 19-208 (260)
143 2f9l_A RAB11B, member RAS onco 99.8 5.3E-20 1.8E-24 137.4 14.5 156 39-215 5-167 (199)
144 1kk1_A EIF2gamma; initiation o 99.8 3.2E-20 1.1E-24 153.2 14.0 162 37-214 8-198 (410)
145 3j2k_7 ERF3, eukaryotic polype 99.8 9.9E-20 3.4E-24 151.2 16.2 157 36-208 14-217 (439)
146 3izy_P Translation initiation 99.8 9.5E-22 3.2E-26 165.9 0.8 161 38-215 3-167 (537)
147 3dpu_A RAB family protein; roc 99.8 1.4E-20 4.6E-25 160.3 7.1 158 36-216 38-208 (535)
148 1oix_A RAS-related protein RAB 99.8 3.5E-19 1.2E-23 132.2 13.2 156 38-214 28-190 (191)
149 2qtf_A Protein HFLX, GTP-bindi 99.8 9.9E-19 3.4E-23 141.7 16.5 168 37-216 177-354 (364)
150 3cb4_D GTP-binding protein LEP 99.8 4E-19 1.4E-23 151.9 14.7 156 38-214 3-180 (599)
151 1g7s_A Translation initiation 99.8 3.5E-19 1.2E-23 152.4 14.3 163 38-215 4-217 (594)
152 2j69_A Bacterial dynamin-like 99.8 8.3E-19 2.8E-23 153.0 15.8 168 37-215 67-324 (695)
153 1jwy_B Dynamin A GTPase domain 99.8 4.4E-19 1.5E-23 141.4 12.2 168 37-215 22-261 (315)
154 3tr5_A RF-3, peptide chain rel 99.8 4.9E-19 1.7E-23 149.8 13.1 114 38-164 12-148 (528)
155 2ywe_A GTP-binding protein LEP 99.8 4.9E-19 1.7E-23 151.1 13.2 157 37-214 4-182 (600)
156 3r7w_B Gtpase2, GTP-binding pr 99.8 8.5E-20 2.9E-24 144.6 7.8 154 41-212 1-170 (331)
157 1zo1_I IF2, translation initia 99.8 8.2E-21 2.8E-25 158.9 1.8 158 38-212 3-163 (501)
158 3p26_A Elongation factor 1 alp 99.8 4.7E-19 1.6E-23 149.0 12.0 150 38-205 32-227 (483)
159 1d2e_A Elongation factor TU (E 99.8 5.8E-19 2E-23 145.0 12.2 161 39-214 3-193 (397)
160 2c78_A Elongation factor TU-A; 99.8 1.3E-18 4.4E-23 143.4 12.1 162 38-214 10-210 (405)
161 2x2e_A Dynamin-1; nitration, h 99.8 8E-19 2.7E-23 142.1 10.5 169 37-213 29-255 (353)
162 1zun_B Sulfate adenylate trans 99.8 1.5E-18 5.3E-23 144.1 12.4 156 37-206 22-214 (434)
163 2elf_A Protein translation elo 99.8 4.5E-18 1.5E-22 138.2 14.7 143 41-215 23-179 (370)
164 1nrj_B SR-beta, signal recogni 99.8 5.7E-19 2E-23 133.4 7.6 117 36-165 9-135 (218)
165 3izq_1 HBS1P, elongation facto 99.7 2.2E-18 7.6E-23 148.1 8.8 151 37-206 165-362 (611)
166 1jny_A EF-1-alpha, elongation 99.7 5.1E-18 1.8E-22 140.9 10.3 157 38-207 5-204 (435)
167 3avx_A Elongation factor TS, e 99.7 1.3E-17 4.3E-22 149.5 13.2 162 37-213 294-483 (1289)
168 2qag_A Septin-2, protein NEDD5 99.7 1E-17 3.5E-22 135.9 11.1 168 37-216 35-233 (361)
169 3p32_A Probable GTPase RV1496/ 99.7 8.5E-18 2.9E-22 136.1 10.7 157 37-216 77-284 (355)
170 1f60_A Elongation factor EEF1A 99.7 8.1E-19 2.8E-23 146.5 4.4 150 39-206 7-202 (458)
171 3t34_A Dynamin-related protein 99.7 1.1E-17 3.7E-22 135.8 10.4 162 38-210 33-255 (360)
172 3zvr_A Dynamin-1; hydrolase, D 99.7 3.2E-17 1.1E-21 142.7 13.8 167 37-213 49-275 (772)
173 3mca_A HBS1, elongation factor 99.7 2.8E-19 9.5E-24 153.3 0.3 157 37-212 175-393 (592)
174 1dar_A EF-G, elongation factor 99.7 1.4E-16 4.6E-21 139.0 15.5 116 37-165 10-144 (691)
175 1udx_A The GTP-binding protein 99.7 1.4E-16 4.8E-21 130.8 14.5 186 13-217 117-326 (416)
176 1r5b_A Eukaryotic peptide chai 99.7 1.6E-17 5.4E-22 139.0 8.7 158 37-207 41-243 (467)
177 2qpt_A EH domain-containing pr 99.7 1.5E-16 5.2E-21 135.3 14.8 127 36-165 62-233 (550)
178 2h5e_A Peptide chain release f 99.7 9E-17 3.1E-21 136.0 12.9 115 38-165 12-149 (529)
179 2rdo_7 EF-G, elongation factor 99.7 5E-16 1.7E-20 135.6 17.5 116 37-165 8-149 (704)
180 2xex_A Elongation factor G; GT 99.7 1.6E-16 5.4E-21 138.7 13.5 117 36-165 7-142 (693)
181 2www_A Methylmalonic aciduria 99.7 6.1E-17 2.1E-21 130.7 10.0 156 37-215 72-278 (349)
182 1wxq_A GTP-binding protein; st 99.7 2.7E-17 9.3E-22 134.6 7.7 87 40-134 1-114 (397)
183 2dy1_A Elongation factor G; tr 99.7 6.1E-16 2.1E-20 134.4 16.0 113 38-163 8-139 (665)
184 2ged_A SR-beta, signal recogni 99.7 7.5E-17 2.6E-21 119.3 8.5 115 37-166 46-172 (193)
185 3vqt_A RF-3, peptide chain rel 99.7 1.6E-16 5.3E-21 135.1 10.8 114 39-165 31-167 (548)
186 2qnr_A Septin-2, protein NEDD5 99.7 1.6E-16 5.5E-21 125.8 7.6 173 36-216 15-214 (301)
187 1h65_A Chloroplast outer envel 99.7 1.6E-15 5.6E-20 118.3 12.9 124 38-166 38-170 (270)
188 3def_A T7I23.11 protein; chlor 99.6 6.4E-16 2.2E-20 120.1 10.3 123 38-165 35-166 (262)
189 2wsm_A Hydrogenase expression/ 99.6 2.6E-16 9E-21 119.0 6.9 154 38-217 29-215 (221)
190 2p67_A LAO/AO transport system 99.6 5.6E-16 1.9E-20 124.8 9.2 156 37-215 54-260 (341)
191 2qag_C Septin-7; cell cycle, c 99.6 2.9E-15 1E-19 123.0 12.0 169 34-212 26-223 (418)
192 1yrb_A ATP(GTP)binding protein 99.6 5.2E-15 1.8E-19 114.7 11.7 124 85-216 109-257 (262)
193 3j25_A Tetracycline resistance 99.6 4.7E-16 1.6E-20 134.6 5.7 114 39-165 2-134 (638)
194 4a9a_A Ribosome-interacting GT 99.6 8.6E-15 2.9E-19 118.5 11.6 119 35-162 68-194 (376)
195 4fn5_A EF-G 1, elongation fact 99.6 2.9E-14 9.8E-19 124.9 13.3 115 37-164 11-151 (709)
196 2hf9_A Probable hydrogenase ni 99.5 1.9E-14 6.4E-19 109.1 9.5 62 150-217 164-225 (226)
197 1n0u_A EF-2, elongation factor 99.5 3.7E-14 1.3E-18 126.1 11.3 114 38-164 18-164 (842)
198 2qm8_A GTPase/ATPase; G protei 99.5 2.4E-14 8.4E-19 114.9 7.8 104 84-215 147-260 (337)
199 3h2y_A GTPase family protein; 99.5 2.9E-15 9.9E-20 121.6 -0.5 124 39-165 160-288 (368)
200 1cip_A Protein (guanine nucleo 99.5 1.2E-13 4.3E-18 111.2 8.8 117 86-215 194-343 (353)
201 3ec1_A YQEH GTPase; atnos1, at 99.5 6.6E-15 2.3E-19 119.6 1.0 125 39-166 162-290 (369)
202 2dby_A GTP-binding protein; GD 99.4 8.1E-13 2.8E-17 106.9 11.5 86 40-133 2-111 (368)
203 1jal_A YCHF protein; nucleotid 99.4 2.7E-12 9.4E-17 103.3 12.9 86 40-133 3-108 (363)
204 2qag_B Septin-6, protein NEDD5 99.4 3.1E-12 1.1E-16 104.9 13.4 155 35-197 38-217 (427)
205 3ohm_A Guanine nucleotide-bind 99.4 1.9E-12 6.6E-17 102.9 9.7 115 98-215 170-317 (327)
206 4fid_A G protein alpha subunit 99.4 2.1E-12 7E-17 103.2 8.9 118 94-214 160-326 (340)
207 3sop_A Neuronal-specific septi 99.3 1.2E-11 4.1E-16 96.2 11.2 125 39-165 2-155 (270)
208 1u0l_A Probable GTPase ENGC; p 99.3 5.6E-13 1.9E-17 105.5 3.6 133 54-211 32-168 (301)
209 3l82_B F-box only protein 4; T 99.2 7.2E-11 2.5E-15 87.1 9.6 171 33-217 10-224 (227)
210 2j37_W Signal recognition part 99.2 3.3E-11 1.1E-15 101.1 8.5 159 38-213 100-310 (504)
211 1tq4_A IIGP1, interferon-induc 99.2 8E-10 2.7E-14 90.6 14.2 165 40-214 70-251 (413)
212 2ohf_A Protein OLA1, GTP-bindi 99.2 5.3E-11 1.8E-15 96.8 7.0 89 39-135 22-130 (396)
213 1zcb_A G alpha I/13; GTP-bindi 99.1 3.8E-10 1.3E-14 91.2 9.0 117 86-215 202-352 (362)
214 1puj_A YLQF, conserved hypothe 99.1 3.9E-10 1.3E-14 88.2 7.8 61 37-98 118-178 (282)
215 2xtz_A Guanine nucleotide-bind 99.0 1.4E-10 4.9E-15 93.4 5.1 113 98-215 186-344 (354)
216 3ec1_A YQEH GTPase; atnos1, at 99.0 4.9E-09 1.7E-13 85.0 10.9 104 104-215 57-161 (369)
217 1puj_A YLQF, conserved hypothe 99.0 1.1E-08 3.9E-13 79.9 12.5 91 113-215 15-105 (282)
218 3h2y_A GTPase family protein; 98.9 3.7E-09 1.3E-13 85.7 9.6 104 104-215 55-159 (368)
219 3l2o_B F-box only protein 4; s 98.9 1.9E-09 6.5E-14 83.4 7.2 108 100-217 192-309 (312)
220 3cnl_A YLQF, putative uncharac 98.9 8.5E-10 2.9E-14 85.4 4.3 58 40-98 100-157 (262)
221 1azs_C GS-alpha; complex (lyas 98.9 9.5E-10 3.3E-14 89.7 4.4 114 97-215 219-384 (402)
222 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 4E-09 1.4E-13 85.9 8.0 88 39-133 20-127 (392)
223 3szr_A Interferon-induced GTP- 98.8 4.3E-08 1.5E-12 84.5 13.4 79 86-166 148-230 (608)
224 3dm5_A SRP54, signal recogniti 98.8 2.9E-08 1E-12 81.8 10.4 118 39-165 100-254 (443)
225 2yv5_A YJEQ protein; hydrolase 98.8 9.2E-09 3.1E-13 81.3 7.2 88 114-211 75-164 (302)
226 1f5n_A Interferon-induced guan 98.8 8.7E-09 3E-13 87.9 6.8 99 37-143 36-142 (592)
227 2v3c_C SRP54, signal recogniti 98.7 1.2E-08 4.3E-13 84.2 6.1 115 39-164 99-252 (432)
228 3kl4_A SRP54, signal recogniti 98.6 3.1E-07 1.1E-11 75.6 10.3 99 84-203 179-277 (433)
229 3cnl_A YLQF, putative uncharac 98.6 8.4E-08 2.9E-12 74.2 6.1 79 119-212 19-97 (262)
230 1j8m_F SRP54, signal recogniti 98.4 1.7E-06 5.9E-11 68.0 8.7 73 84-164 180-253 (297)
231 3e70_C DPA, signal recognition 98.2 7E-06 2.4E-10 65.4 10.1 142 39-205 129-309 (328)
232 1t9h_A YLOQ, probable GTPase E 98.2 1.5E-06 5.2E-11 68.5 4.5 85 119-210 84-171 (307)
233 3q5d_A Atlastin-1; G protein, 98.0 1E-05 3.4E-10 66.9 7.4 25 38-62 66-90 (447)
234 1vma_A Cell division protein F 98.0 1.6E-05 5.5E-10 62.7 7.2 23 40-62 105-127 (306)
235 1t9h_A YLOQ, probable GTPase E 97.9 2.6E-06 9.1E-11 67.1 2.0 56 40-97 174-236 (307)
236 2rcn_A Probable GTPase ENGC; Y 97.9 2.8E-05 9.7E-10 62.5 7.8 82 120-210 129-213 (358)
237 2yv5_A YJEQ protein; hydrolase 97.9 2.3E-05 8E-10 61.7 6.3 55 40-96 166-227 (302)
238 2xxa_A Signal recognition part 97.8 3.3E-05 1.1E-09 63.8 6.4 22 39-60 100-121 (433)
239 2rcn_A Probable GTPase ENGC; Y 97.8 1.7E-05 5.7E-10 63.8 4.0 57 40-96 216-279 (358)
240 1u0l_A Probable GTPase ENGC; p 97.7 2.6E-05 8.8E-10 61.4 4.2 56 40-96 170-232 (301)
241 2px0_A Flagellar biosynthesis 97.7 0.0002 6.8E-09 56.2 8.5 24 39-62 105-128 (296)
242 1zu4_A FTSY; GTPase, signal re 97.6 0.0015 5E-08 51.8 12.5 23 40-62 106-128 (320)
243 3ney_A 55 kDa erythrocyte memb 97.5 5.4E-05 1.8E-09 55.7 3.6 26 37-62 17-42 (197)
244 2ffh_A Protein (FFH); SRP54, s 97.5 0.00013 4.4E-09 60.0 6.0 23 40-62 99-121 (425)
245 1kgd_A CASK, peripheral plasma 97.5 6.3E-05 2.2E-09 54.5 2.9 23 40-62 6-28 (180)
246 1ye8_A Protein THEP1, hypothet 97.4 7.9E-05 2.7E-09 53.9 3.3 22 41-62 2-23 (178)
247 1lvg_A Guanylate kinase, GMP k 97.4 6.9E-05 2.4E-09 55.2 2.9 23 40-62 5-27 (198)
248 1ls1_A Signal recognition part 97.4 0.00059 2E-08 53.4 8.3 23 40-62 99-121 (295)
249 1ex7_A Guanylate kinase; subst 97.4 6.5E-05 2.2E-09 54.8 2.7 21 42-62 4-24 (186)
250 1bif_A 6-phosphofructo-2-kinas 97.4 0.0001 3.4E-09 61.6 3.9 26 37-62 37-62 (469)
251 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.0019 6.6E-08 49.4 10.8 23 40-62 5-27 (260)
252 3a00_A Guanylate kinase, GMP k 97.3 0.0001 3.5E-09 53.6 2.8 22 41-62 3-24 (186)
253 3tr0_A Guanylate kinase, GMP k 97.3 0.00013 4.3E-09 53.7 2.9 23 40-62 8-30 (205)
254 1znw_A Guanylate kinase, GMP k 97.3 0.00013 4.5E-09 54.0 2.9 22 41-62 22-43 (207)
255 4dzz_A Plasmid partitioning pr 97.3 0.00042 1.5E-08 50.8 5.6 64 84-163 75-143 (206)
256 1s96_A Guanylate kinase, GMP k 97.3 0.00014 4.6E-09 54.5 2.9 23 40-62 17-39 (219)
257 1z6g_A Guanylate kinase; struc 97.3 0.00013 4.6E-09 54.5 2.9 23 40-62 24-46 (218)
258 1zp6_A Hypothetical protein AT 97.3 0.00015 5.1E-09 52.7 3.1 23 40-62 10-32 (191)
259 3tau_A Guanylate kinase, GMP k 97.2 0.00019 6.7E-09 53.1 3.0 23 40-62 9-31 (208)
260 3c8u_A Fructokinase; YP_612366 97.2 0.00018 6E-09 53.3 2.8 24 39-62 22-45 (208)
261 3tif_A Uncharacterized ABC tra 97.1 0.00022 7.5E-09 54.0 2.9 22 41-62 33-54 (235)
262 1htw_A HI0065; nucleotide-bind 97.1 0.00025 8.5E-09 50.3 2.9 22 41-62 35-56 (158)
263 4gp7_A Metallophosphoesterase; 97.1 0.00025 8.5E-09 50.9 2.8 21 41-61 11-31 (171)
264 2pcj_A ABC transporter, lipopr 97.1 0.00027 9.4E-09 53.0 2.9 22 41-62 32-53 (224)
265 1kag_A SKI, shikimate kinase I 97.1 0.00031 1.1E-08 50.1 2.9 23 40-62 5-27 (173)
266 2j41_A Guanylate kinase; GMP, 97.0 0.0003 1E-08 51.7 2.9 23 40-62 7-29 (207)
267 2qor_A Guanylate kinase; phosp 97.0 0.00032 1.1E-08 51.7 2.9 23 40-62 13-35 (204)
268 2onk_A Molybdate/tungstate ABC 97.0 0.00035 1.2E-08 53.1 3.2 23 40-62 25-47 (240)
269 3asz_A Uridine kinase; cytidin 97.0 0.00035 1.2E-08 51.6 3.0 23 40-62 7-29 (211)
270 3gfo_A Cobalt import ATP-bindi 97.0 0.00034 1.1E-08 54.2 3.0 22 41-62 36-57 (275)
271 2bdt_A BH3686; alpha-beta prot 97.0 0.00034 1.2E-08 50.8 2.9 21 41-61 4-24 (189)
272 1sgw_A Putative ABC transporte 97.0 0.00036 1.2E-08 52.0 3.0 22 41-62 37-58 (214)
273 3lw7_A Adenylate kinase relate 97.0 0.00042 1.4E-08 49.2 3.3 20 40-59 2-21 (179)
274 2cbz_A Multidrug resistance-as 97.0 0.00039 1.3E-08 52.7 3.2 22 41-62 33-54 (237)
275 1mv5_A LMRA, multidrug resista 97.0 0.00041 1.4E-08 52.8 3.2 22 41-62 30-51 (243)
276 1b0u_A Histidine permease; ABC 97.0 0.00037 1.3E-08 53.6 3.0 22 41-62 34-55 (262)
277 4g1u_C Hemin import ATP-bindin 97.0 0.00037 1.3E-08 53.7 3.0 22 41-62 39-60 (266)
278 2ff7_A Alpha-hemolysin translo 97.0 0.00041 1.4E-08 52.9 3.2 22 41-62 37-58 (247)
279 2eyu_A Twitching motility prot 97.0 0.00038 1.3E-08 53.5 2.9 22 41-62 27-48 (261)
280 2pze_A Cystic fibrosis transme 97.0 0.00044 1.5E-08 52.1 3.2 22 41-62 36-57 (229)
281 1np6_A Molybdopterin-guanine d 97.0 0.00048 1.6E-08 49.6 3.3 24 39-62 6-29 (174)
282 3kb2_A SPBC2 prophage-derived 97.0 0.00048 1.6E-08 49.0 3.2 22 41-62 3-24 (173)
283 4eun_A Thermoresistant glucoki 97.0 0.00054 1.9E-08 50.3 3.6 24 39-62 29-52 (200)
284 1g6h_A High-affinity branched- 97.0 0.0004 1.4E-08 53.2 2.9 22 41-62 35-56 (257)
285 2v9p_A Replication protein E1; 96.9 0.00043 1.5E-08 54.4 3.0 23 40-62 127-149 (305)
286 4ido_A Atlastin-1; GTPase, GTP 96.9 0.0037 1.3E-07 51.6 8.6 23 38-60 66-88 (457)
287 2bbw_A Adenylate kinase 4, AK4 96.9 0.00051 1.8E-08 52.1 3.4 22 39-60 27-48 (246)
288 2olj_A Amino acid ABC transpor 96.9 0.00045 1.5E-08 53.2 3.0 22 41-62 52-73 (263)
289 2i3b_A HCR-ntpase, human cance 96.9 0.00044 1.5E-08 50.5 2.8 22 41-62 3-24 (189)
290 1ji0_A ABC transporter; ATP bi 96.9 0.00045 1.5E-08 52.4 2.9 22 41-62 34-55 (240)
291 2ghi_A Transport protein; mult 96.9 0.00049 1.7E-08 52.9 3.2 22 41-62 48-69 (260)
292 1vpl_A ABC transporter, ATP-bi 96.9 0.00046 1.6E-08 52.9 3.0 22 41-62 43-64 (256)
293 3b85_A Phosphate starvation-in 96.9 0.00039 1.3E-08 51.6 2.5 22 41-62 24-45 (208)
294 3cwq_A Para family chromosome 96.9 0.00045 1.5E-08 51.2 2.8 66 84-164 67-134 (209)
295 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00049 1.7E-08 52.5 3.1 22 41-62 31-52 (250)
296 2zu0_C Probable ATP-dependent 96.9 0.00056 1.9E-08 52.7 3.4 22 41-62 48-69 (267)
297 2qi9_C Vitamin B12 import ATP- 96.9 0.00054 1.9E-08 52.3 3.2 22 41-62 28-49 (249)
298 1cke_A CK, MSSA, protein (cyti 96.9 0.00059 2E-08 50.9 3.4 23 40-62 6-28 (227)
299 2ixe_A Antigen peptide transpo 96.9 0.00053 1.8E-08 53.0 3.2 22 41-62 47-68 (271)
300 2ihy_A ABC transporter, ATP-bi 96.9 0.00055 1.9E-08 53.2 3.2 22 41-62 49-70 (279)
301 3t61_A Gluconokinase; PSI-biol 96.9 0.00064 2.2E-08 49.9 3.4 24 39-62 18-41 (202)
302 2if2_A Dephospho-COA kinase; a 96.9 0.0006 2.1E-08 50.0 3.2 22 40-61 2-23 (204)
303 1y63_A LMAJ004144AAA protein; 96.9 0.00089 3E-08 48.4 4.1 24 39-62 10-33 (184)
304 3lnc_A Guanylate kinase, GMP k 96.9 0.00033 1.1E-08 52.6 1.8 23 40-62 28-51 (231)
305 2nq2_C Hypothetical ABC transp 96.9 0.00061 2.1E-08 52.1 3.2 22 41-62 33-54 (253)
306 3uie_A Adenylyl-sulfate kinase 96.9 0.00057 1.9E-08 50.2 2.9 23 40-62 26-48 (200)
307 3aez_A Pantothenate kinase; tr 96.8 0.00055 1.9E-08 54.0 2.9 24 39-62 90-113 (312)
308 1knq_A Gluconate kinase; ALFA/ 96.8 0.00079 2.7E-08 48.1 3.5 23 40-62 9-31 (175)
309 2f1r_A Molybdopterin-guanine d 96.8 0.0003 1E-08 50.5 1.2 23 40-62 3-25 (171)
310 3ec2_A DNA replication protein 96.8 0.0005 1.7E-08 49.5 2.4 24 39-62 38-61 (180)
311 1ly1_A Polynucleotide kinase; 96.8 0.00067 2.3E-08 48.5 3.1 22 40-61 3-24 (181)
312 2yz2_A Putative ABC transporte 96.8 0.00065 2.2E-08 52.3 3.2 22 41-62 35-56 (266)
313 3nh6_A ATP-binding cassette SU 96.8 0.0004 1.4E-08 54.6 1.9 23 40-62 81-103 (306)
314 1qhx_A CPT, protein (chloramph 96.8 0.00072 2.5E-08 48.4 3.1 23 40-62 4-26 (178)
315 3vaa_A Shikimate kinase, SK; s 96.8 0.00071 2.4E-08 49.6 3.1 23 40-62 26-48 (199)
316 2pjz_A Hypothetical protein ST 96.8 0.00073 2.5E-08 52.0 3.2 22 41-62 32-53 (263)
317 4a74_A DNA repair and recombin 96.8 0.00064 2.2E-08 50.7 2.8 22 41-62 27-48 (231)
318 4b4t_L 26S protease subunit RP 96.8 0.0041 1.4E-07 51.2 7.6 24 39-62 215-238 (437)
319 2jaq_A Deoxyguanosine kinase; 96.7 0.0009 3.1E-08 48.9 3.3 22 41-62 2-23 (205)
320 3fvq_A Fe(3+) IONS import ATP- 96.7 0.00077 2.6E-08 54.2 3.1 22 41-62 32-53 (359)
321 1jjv_A Dephospho-COA kinase; P 96.7 0.00092 3.2E-08 49.1 3.3 22 40-61 3-24 (206)
322 1nks_A Adenylate kinase; therm 96.7 0.00092 3.2E-08 48.3 3.2 22 41-62 3-24 (194)
323 3fb4_A Adenylate kinase; psych 96.7 0.001 3.4E-08 49.3 3.4 22 41-62 2-23 (216)
324 2ehv_A Hypothetical protein PH 96.7 0.00087 3E-08 50.6 3.1 21 41-61 32-52 (251)
325 2bbs_A Cystic fibrosis transme 96.7 0.00089 3E-08 52.3 3.1 22 41-62 66-87 (290)
326 3trf_A Shikimate kinase, SK; a 96.7 0.0011 3.7E-08 47.8 3.4 24 39-62 5-28 (185)
327 2qt1_A Nicotinamide riboside k 96.7 0.001 3.4E-08 49.0 3.3 23 40-62 22-44 (207)
328 1lw7_A Transcriptional regulat 96.7 0.00069 2.4E-08 54.6 2.5 24 39-62 170-193 (365)
329 1kht_A Adenylate kinase; phosp 96.7 0.0011 3.8E-08 47.8 3.4 23 40-62 4-26 (192)
330 1xjc_A MOBB protein homolog; s 96.7 0.0011 3.8E-08 47.4 3.3 24 39-62 4-27 (169)
331 2kjq_A DNAA-related protein; s 96.7 0.00065 2.2E-08 47.6 2.0 24 39-62 36-59 (149)
332 2gza_A Type IV secretion syste 96.7 0.00086 2.9E-08 54.0 3.0 23 40-62 176-198 (361)
333 3dl0_A Adenylate kinase; phosp 96.7 0.001 3.6E-08 49.2 3.3 22 41-62 2-23 (216)
334 3tui_C Methionine import ATP-b 96.7 0.00095 3.2E-08 53.7 3.2 22 41-62 56-77 (366)
335 2jeo_A Uridine-cytidine kinase 96.7 0.00088 3E-08 50.8 2.9 23 40-62 26-48 (245)
336 2cdn_A Adenylate kinase; phosp 96.7 0.0016 5.4E-08 47.7 4.2 25 38-62 19-43 (201)
337 3tqc_A Pantothenate kinase; bi 96.7 0.0011 3.9E-08 52.4 3.5 26 37-62 90-115 (321)
338 3jvv_A Twitching mobility prot 96.7 0.00086 2.9E-08 53.9 2.9 22 41-62 125-146 (356)
339 1z47_A CYSA, putative ABC-tran 96.7 0.00096 3.3E-08 53.6 3.1 22 41-62 43-64 (355)
340 3iij_A Coilin-interacting nucl 96.7 0.0016 5.3E-08 46.8 4.0 24 39-62 11-34 (180)
341 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.0009 3.1E-08 53.2 2.9 23 40-62 172-194 (330)
342 3rlf_A Maltose/maltodextrin im 96.6 0.001 3.5E-08 53.8 3.2 22 41-62 31-52 (381)
343 1odf_A YGR205W, hypothetical 3 96.6 0.0012 4.1E-08 51.5 3.5 26 37-62 29-54 (290)
344 2rhm_A Putative kinase; P-loop 96.6 0.0012 4E-08 47.8 3.2 23 40-62 6-28 (193)
345 2yyz_A Sugar ABC transporter, 96.6 0.001 3.5E-08 53.5 3.1 22 41-62 31-52 (359)
346 1ukz_A Uridylate kinase; trans 96.6 0.0016 5.3E-08 47.7 3.9 24 39-62 15-38 (203)
347 2it1_A 362AA long hypothetical 96.6 0.0011 3.6E-08 53.5 3.2 22 41-62 31-52 (362)
348 3cm0_A Adenylate kinase; ATP-b 96.6 0.0013 4.6E-08 47.3 3.3 22 40-61 5-26 (186)
349 1g29_1 MALK, maltose transport 96.6 0.0011 3.9E-08 53.5 3.1 22 41-62 31-52 (372)
350 1v43_A Sugar-binding transport 96.6 0.0012 4.1E-08 53.4 3.2 22 41-62 39-60 (372)
351 3end_A Light-independent proto 96.6 0.0021 7.3E-08 50.3 4.6 22 39-60 41-62 (307)
352 1via_A Shikimate kinase; struc 96.6 0.0012 4.3E-08 47.1 3.0 22 41-62 6-27 (175)
353 1uf9_A TT1252 protein; P-loop, 96.6 0.0013 4.6E-08 47.9 3.2 25 38-62 7-31 (203)
354 1gvn_B Zeta; postsegregational 96.6 0.0014 4.9E-08 51.0 3.4 24 39-62 33-56 (287)
355 2v54_A DTMP kinase, thymidylat 96.6 0.0018 6.3E-08 47.3 3.8 23 40-62 5-27 (204)
356 2x8a_A Nuclear valosin-contain 96.6 0.0012 4E-08 51.1 2.9 22 41-62 46-67 (274)
357 3sr0_A Adenylate kinase; phosp 96.6 0.0015 5E-08 48.4 3.3 22 41-62 2-23 (206)
358 1rz3_A Hypothetical protein rb 96.6 0.0012 4.3E-08 48.4 2.9 24 39-62 22-45 (201)
359 1sq5_A Pantothenate kinase; P- 96.6 0.0012 4E-08 52.0 2.9 24 39-62 80-103 (308)
360 2c95_A Adenylate kinase 1; tra 96.5 0.0019 6.3E-08 46.9 3.8 24 39-62 9-32 (196)
361 1nn5_A Similar to deoxythymidy 96.5 0.0019 6.5E-08 47.6 3.8 24 39-62 9-32 (215)
362 4b4t_M 26S protease regulatory 96.5 0.0069 2.4E-07 49.9 7.4 24 39-62 215-238 (434)
363 3tlx_A Adenylate kinase 2; str 96.5 0.0016 5.3E-08 49.5 3.3 24 39-62 29-52 (243)
364 3b9p_A CG5977-PA, isoform A; A 96.5 0.011 3.9E-07 45.8 8.4 24 39-62 54-77 (297)
365 4e22_A Cytidylate kinase; P-lo 96.5 0.002 6.7E-08 49.2 3.9 22 39-60 27-48 (252)
366 2ewv_A Twitching motility prot 96.5 0.0013 4.6E-08 53.1 3.0 22 41-62 138-159 (372)
367 4b4t_K 26S protease regulatory 96.5 0.0085 2.9E-07 49.3 7.8 24 39-62 206-229 (428)
368 1qf9_A UMP/CMP kinase, protein 96.5 0.002 6.9E-08 46.5 3.7 23 40-62 7-29 (194)
369 1d2n_A N-ethylmaleimide-sensit 96.5 0.019 6.5E-07 44.0 9.5 24 39-62 64-87 (272)
370 1zak_A Adenylate kinase; ATP:A 96.5 0.0018 6E-08 48.3 3.5 23 40-62 6-28 (222)
371 1rj9_A FTSY, signal recognitio 96.5 0.002 6.7E-08 50.7 3.8 24 39-62 102-125 (304)
372 1tev_A UMP-CMP kinase; ploop, 96.5 0.0016 5.4E-08 47.2 3.1 23 40-62 4-26 (196)
373 3gd7_A Fusion complex of cysti 96.5 0.0014 4.8E-08 53.3 3.1 23 40-62 48-70 (390)
374 1e4v_A Adenylate kinase; trans 96.5 0.0017 5.9E-08 48.0 3.4 22 41-62 2-23 (214)
375 1ixz_A ATP-dependent metallopr 96.5 0.0014 4.9E-08 49.8 2.9 23 40-62 50-72 (254)
376 1zd8_A GTP:AMP phosphotransfer 96.5 0.0019 6.7E-08 48.2 3.6 24 39-62 7-30 (227)
377 2ze6_A Isopentenyl transferase 96.5 0.0015 5.1E-08 49.9 2.9 22 41-62 3-24 (253)
378 2oap_1 GSPE-2, type II secreti 96.5 0.0014 5E-08 55.2 3.1 22 41-62 262-283 (511)
379 2plr_A DTMP kinase, probable t 96.5 0.0018 6.3E-08 47.5 3.3 23 40-62 5-27 (213)
380 2bwj_A Adenylate kinase 5; pho 96.5 0.002 7E-08 46.8 3.5 23 40-62 13-35 (199)
381 3d31_A Sulfate/molybdate ABC t 96.5 0.00099 3.4E-08 53.3 1.9 22 41-62 28-49 (348)
382 1aky_A Adenylate kinase; ATP:A 96.4 0.0023 7.7E-08 47.6 3.8 23 40-62 5-27 (220)
383 2iyv_A Shikimate kinase, SK; t 96.4 0.0017 5.8E-08 46.7 3.0 23 40-62 3-25 (184)
384 3zvl_A Bifunctional polynucleo 96.4 0.012 4.1E-07 48.2 8.4 25 38-62 257-281 (416)
385 1uj2_A Uridine-cytidine kinase 96.4 0.0018 6.1E-08 49.3 3.2 26 37-62 20-45 (252)
386 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.052 1.8E-06 41.0 11.5 25 38-62 38-62 (262)
387 1p9r_A General secretion pathw 96.4 0.0015 5.2E-08 53.6 2.9 22 41-62 169-190 (418)
388 2pt5_A Shikimate kinase, SK; a 96.4 0.0021 7.2E-08 45.4 3.3 22 41-62 2-23 (168)
389 4b4t_J 26S protease regulatory 96.4 0.0087 3E-07 48.7 7.2 24 39-62 182-205 (405)
390 2wwf_A Thymidilate kinase, put 96.4 0.0024 8.1E-08 47.0 3.6 24 39-62 10-33 (212)
391 3b9q_A Chloroplast SRP recepto 96.4 0.0017 5.8E-08 51.0 2.9 23 40-62 101-123 (302)
392 3umf_A Adenylate kinase; rossm 96.4 0.0026 8.9E-08 47.4 3.8 22 41-62 31-52 (217)
393 2vp4_A Deoxynucleoside kinase; 96.4 0.0014 4.7E-08 49.3 2.2 23 40-62 21-43 (230)
394 1gtv_A TMK, thymidylate kinase 96.4 0.00071 2.4E-08 49.9 0.5 22 41-62 2-23 (214)
395 2z0h_A DTMP kinase, thymidylat 96.3 0.0021 7.2E-08 46.6 3.0 22 41-62 2-23 (197)
396 1e6c_A Shikimate kinase; phosp 96.3 0.0023 8E-08 45.4 3.2 23 40-62 3-25 (173)
397 1jbk_A CLPB protein; beta barr 96.3 0.0027 9.3E-08 45.4 3.6 24 39-62 43-66 (195)
398 3kta_A Chromosome segregation 96.3 0.0021 7.1E-08 46.2 2.9 21 41-61 28-48 (182)
399 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.002 6.9E-08 47.9 2.9 22 41-62 25-46 (235)
400 1oxx_K GLCV, glucose, ABC tran 96.3 0.00096 3.3E-08 53.6 1.1 22 41-62 33-54 (353)
401 2pbr_A DTMP kinase, thymidylat 96.3 0.0026 8.8E-08 46.0 3.4 22 41-62 2-23 (195)
402 1nij_A Hypothetical protein YJ 96.3 0.0014 4.7E-08 51.9 2.0 24 39-62 4-27 (318)
403 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.016 5.6E-07 45.7 8.3 24 39-62 45-68 (322)
404 2yvu_A Probable adenylyl-sulfa 96.3 0.0022 7.6E-08 46.3 2.9 24 39-62 13-36 (186)
405 1in4_A RUVB, holliday junction 96.3 0.002 6.8E-08 51.3 2.9 23 40-62 52-74 (334)
406 2xb4_A Adenylate kinase; ATP-b 96.3 0.0027 9.3E-08 47.4 3.4 22 41-62 2-23 (223)
407 1iy2_A ATP-dependent metallopr 96.3 0.0021 7.3E-08 49.6 2.9 22 41-62 75-96 (278)
408 2pez_A Bifunctional 3'-phospho 96.3 0.0023 7.9E-08 45.9 2.9 23 40-62 6-28 (179)
409 2npi_A Protein CLP1; CLP1-PCF1 96.3 0.0019 6.5E-08 53.7 2.8 23 40-62 139-161 (460)
410 2vli_A Antibiotic resistance p 96.3 0.0021 7.1E-08 46.1 2.6 24 39-62 5-28 (183)
411 3r20_A Cytidylate kinase; stru 96.3 0.0029 9.9E-08 47.7 3.4 24 39-62 9-32 (233)
412 1vht_A Dephospho-COA kinase; s 96.3 0.0027 9.1E-08 47.1 3.2 23 39-61 4-26 (218)
413 3be4_A Adenylate kinase; malar 96.2 0.003 1E-07 46.9 3.4 23 40-62 6-28 (217)
414 2p5t_B PEZT; postsegregational 96.2 0.0018 6.3E-08 49.3 2.2 24 39-62 32-55 (253)
415 3nwj_A ATSK2; P loop, shikimat 96.2 0.0024 8.3E-08 48.7 2.8 23 40-62 49-71 (250)
416 1cr0_A DNA primase/helicase; R 96.2 0.0024 8.3E-08 49.7 2.8 22 41-62 37-58 (296)
417 2b8t_A Thymidine kinase; deoxy 96.2 0.003 1E-07 47.3 3.2 41 124-164 90-130 (223)
418 4b4t_I 26S protease regulatory 96.2 0.016 5.5E-07 47.5 7.6 24 39-62 216-239 (437)
419 1lv7_A FTSH; alpha/beta domain 96.2 0.0037 1.3E-07 47.6 3.7 24 39-62 45-68 (257)
420 1ak2_A Adenylate kinase isoenz 96.2 0.0042 1.4E-07 46.6 3.9 24 39-62 16-39 (233)
421 2obl_A ESCN; ATPase, hydrolase 96.2 0.0028 9.7E-08 50.7 3.1 23 40-62 72-94 (347)
422 2f6r_A COA synthase, bifunctio 96.2 0.0037 1.3E-07 48.5 3.7 24 38-61 74-97 (281)
423 2cvh_A DNA repair and recombin 96.1 0.0029 9.9E-08 46.7 2.9 21 41-61 22-42 (220)
424 1sxj_A Activator 1 95 kDa subu 96.1 0.019 6.4E-07 48.5 8.0 24 39-62 77-100 (516)
425 2og2_A Putative signal recogni 96.1 0.0029 1E-07 50.8 2.9 23 40-62 158-180 (359)
426 1n0w_A DNA repair protein RAD5 96.1 0.0032 1.1E-07 47.2 2.9 22 41-62 26-47 (243)
427 3b60_A Lipid A export ATP-bind 96.1 0.0032 1.1E-07 54.0 3.2 23 40-62 370-392 (582)
428 3euj_A Chromosome partition pr 96.1 0.0031 1.1E-07 52.6 2.9 23 40-62 30-52 (483)
429 1yqt_A RNAse L inhibitor; ATP- 96.1 0.0036 1.2E-07 53.1 3.4 22 41-62 49-70 (538)
430 2yhs_A FTSY, cell division pro 96.0 0.0032 1.1E-07 52.6 2.9 23 40-62 294-316 (503)
431 1zuh_A Shikimate kinase; alpha 96.0 0.0044 1.5E-07 43.8 3.3 23 40-62 8-30 (168)
432 1m7g_A Adenylylsulfate kinase; 96.0 0.0035 1.2E-07 46.2 2.9 23 40-62 26-48 (211)
433 2p65_A Hypothetical protein PF 96.0 0.0034 1.2E-07 44.8 2.7 24 39-62 43-66 (187)
434 3b5x_A Lipid A export ATP-bind 96.0 0.0036 1.2E-07 53.6 3.2 23 40-62 370-392 (582)
435 2w58_A DNAI, primosome compone 96.0 0.0047 1.6E-07 45.1 3.4 23 40-62 55-77 (202)
436 4eaq_A DTMP kinase, thymidylat 96.0 0.0038 1.3E-07 46.9 2.9 23 40-62 27-49 (229)
437 2dpy_A FLII, flagellum-specifi 96.0 0.0039 1.3E-07 51.5 3.1 22 41-62 159-180 (438)
438 3bos_A Putative DNA replicatio 96.0 0.0052 1.8E-07 45.8 3.6 24 39-62 52-75 (242)
439 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.0048 1.7E-07 43.0 3.1 21 41-61 25-45 (149)
440 1svm_A Large T antigen; AAA+ f 95.9 0.004 1.4E-07 50.4 2.9 24 39-62 169-192 (377)
441 2yl4_A ATP-binding cassette SU 95.9 0.0032 1.1E-07 54.1 2.4 23 40-62 371-393 (595)
442 3qf7_A RAD50; ABC-ATPase, ATPa 95.9 0.0045 1.5E-07 49.9 3.1 20 41-60 25-44 (365)
443 3j16_B RLI1P; ribosome recycli 95.9 0.0044 1.5E-07 53.4 3.2 22 41-62 105-126 (608)
444 3ozx_A RNAse L inhibitor; ATP 95.9 0.0042 1.4E-07 52.7 3.0 22 41-62 27-48 (538)
445 3qf4_B Uncharacterized ABC tra 95.9 0.0035 1.2E-07 53.9 2.6 23 40-62 382-404 (598)
446 4b4t_H 26S protease regulatory 95.9 0.025 8.5E-07 46.8 7.5 25 38-62 242-266 (467)
447 2grj_A Dephospho-COA kinase; T 95.9 0.0053 1.8E-07 44.8 3.1 25 38-62 11-35 (192)
448 3ake_A Cytidylate kinase; CMP 95.9 0.0057 2E-07 44.7 3.3 22 41-62 4-25 (208)
449 3d8b_A Fidgetin-like protein 1 95.8 0.027 9.3E-07 45.1 7.5 24 39-62 117-140 (357)
450 2qmh_A HPR kinase/phosphorylas 95.8 0.0054 1.9E-07 44.9 3.0 23 40-62 35-57 (205)
451 4a82_A Cystic fibrosis transme 95.8 0.003 1E-07 54.1 1.8 23 40-62 368-390 (578)
452 3t15_A Ribulose bisphosphate c 95.8 0.0067 2.3E-07 47.3 3.6 24 39-62 36-59 (293)
453 1ltq_A Polynucleotide kinase; 95.8 0.0055 1.9E-07 47.7 3.1 22 40-61 3-24 (301)
454 3bk7_A ABC transporter ATP-bin 95.8 0.0054 1.8E-07 52.8 3.2 22 41-62 119-140 (607)
455 3qf4_A ABC transporter, ATP-bi 95.8 0.0038 1.3E-07 53.6 2.3 23 40-62 370-392 (587)
456 1q3t_A Cytidylate kinase; nucl 95.8 0.0075 2.6E-07 45.3 3.7 24 38-61 15-38 (236)
457 3vfd_A Spastin; ATPase, microt 95.7 0.022 7.7E-07 46.1 6.7 24 39-62 148-171 (389)
458 3ozx_A RNAse L inhibitor; ATP 95.7 0.0057 2E-07 51.9 3.2 22 41-62 296-317 (538)
459 1nlf_A Regulatory protein REPA 95.7 0.0054 1.8E-07 47.3 2.8 23 40-62 31-53 (279)
460 3h4m_A Proteasome-activating n 95.7 0.0073 2.5E-07 46.5 3.6 24 39-62 51-74 (285)
461 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0065 2.2E-07 51.5 3.4 22 41-62 314-335 (538)
462 1njg_A DNA polymerase III subu 95.7 0.006 2.1E-07 45.3 2.9 23 40-62 46-68 (250)
463 3gmt_A Adenylate kinase; ssgci 95.7 0.0079 2.7E-07 45.2 3.4 25 38-62 7-31 (230)
464 2chg_A Replication factor C sm 95.7 0.0062 2.1E-07 44.6 2.9 22 41-62 40-61 (226)
465 1a7j_A Phosphoribulokinase; tr 95.6 0.0045 1.6E-07 48.2 2.0 24 39-62 5-28 (290)
466 1tue_A Replication protein E1; 95.6 0.0048 1.6E-07 45.5 2.0 22 41-62 60-81 (212)
467 3n70_A Transport activator; si 95.6 0.0076 2.6E-07 41.7 2.9 23 40-62 25-47 (145)
468 3cf0_A Transitional endoplasmi 95.6 0.0064 2.2E-07 47.5 2.8 24 39-62 49-72 (301)
469 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0092 3.1E-07 47.7 3.7 26 37-62 22-47 (359)
470 3exa_A TRNA delta(2)-isopenten 95.6 0.0077 2.6E-07 47.4 3.2 23 40-62 4-26 (322)
471 1zcb_A G alpha I/13; GTP-bindi 95.6 0.0077 2.6E-07 48.5 3.2 24 37-60 31-54 (362)
472 3bk7_A ABC transporter ATP-bin 95.6 0.0076 2.6E-07 51.9 3.4 22 41-62 384-405 (607)
473 3syl_A Protein CBBX; photosynt 95.5 0.01 3.5E-07 46.2 3.9 25 38-62 66-90 (309)
474 1sxj_E Activator 1 40 kDa subu 95.5 0.0071 2.4E-07 48.1 3.0 22 41-62 38-59 (354)
475 1fnn_A CDC6P, cell division co 95.5 0.0083 2.8E-07 48.2 3.3 23 40-62 45-67 (389)
476 1sxj_C Activator 1 40 kDa subu 95.5 0.0093 3.2E-07 47.4 3.5 23 40-62 47-69 (340)
477 1l8q_A Chromosomal replication 95.5 0.0073 2.5E-07 47.6 2.8 23 40-62 38-60 (324)
478 3d3q_A TRNA delta(2)-isopenten 95.5 0.0082 2.8E-07 47.8 3.0 23 40-62 8-30 (340)
479 3a8t_A Adenylate isopentenyltr 95.5 0.0088 3E-07 47.5 3.2 23 40-62 41-63 (339)
480 3crm_A TRNA delta(2)-isopenten 95.5 0.0085 2.9E-07 47.3 3.1 23 40-62 6-28 (323)
481 3j16_B RLI1P; ribosome recycli 95.5 0.0086 2.9E-07 51.5 3.4 22 41-62 380-401 (608)
482 2dr3_A UPF0273 protein PH0284; 95.4 0.0089 3E-07 44.8 3.0 22 41-62 25-46 (247)
483 2qby_A CDC6 homolog 1, cell di 95.4 0.0078 2.7E-07 48.2 2.9 24 39-62 45-68 (386)
484 1qhl_A Protein (cell division 95.4 0.0011 3.7E-08 49.8 -2.1 22 41-62 29-50 (227)
485 4f4c_A Multidrug resistance pr 95.4 0.005 1.7E-07 57.8 1.8 23 40-62 1106-1128(1321)
486 3pvs_A Replication-associated 95.4 0.065 2.2E-06 44.4 8.3 23 40-62 51-73 (447)
487 1pzn_A RAD51, DNA repair and r 95.4 0.0082 2.8E-07 48.0 2.8 22 41-62 133-154 (349)
488 3foz_A TRNA delta(2)-isopenten 95.4 0.012 4E-07 46.2 3.5 23 40-62 11-33 (316)
489 3cf2_A TER ATPase, transitiona 95.3 0.032 1.1E-06 49.5 6.5 25 38-62 237-261 (806)
490 3tqf_A HPR(Ser) kinase; transf 95.3 0.011 3.7E-07 42.3 2.9 23 40-62 17-39 (181)
491 3qks_A DNA double-strand break 95.2 0.012 4E-07 43.3 3.1 21 41-61 25-45 (203)
492 2h92_A Cytidylate kinase; ross 95.2 0.013 4.5E-07 43.2 3.2 23 40-62 4-26 (219)
493 1ofh_A ATP-dependent HSL prote 95.1 0.014 4.8E-07 45.3 3.5 24 39-62 50-73 (310)
494 1sxj_D Activator 1 41 kDa subu 95.0 0.017 5.8E-07 45.8 3.8 23 40-62 59-81 (353)
495 3cr8_A Sulfate adenylyltranfer 95.0 0.0077 2.6E-07 51.2 1.8 23 40-62 370-392 (552)
496 4fcw_A Chaperone protein CLPB; 95.0 0.017 5.8E-07 45.0 3.6 22 41-62 49-70 (311)
497 4f4c_A Multidrug resistance pr 95.0 0.012 4E-07 55.3 3.1 23 40-62 445-467 (1321)
498 3eie_A Vacuolar protein sortin 95.0 0.017 5.8E-07 45.5 3.6 24 39-62 51-74 (322)
499 2qgz_A Helicase loader, putati 95.0 0.02 6.8E-07 44.9 4.0 24 39-62 152-175 (308)
500 1c9k_A COBU, adenosylcobinamid 95.0 0.017 5.8E-07 41.6 3.2 21 42-62 2-22 (180)
No 1
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=100.00 E-value=1.9e-31 Score=198.42 Aligned_cols=192 Identities=46% Similarity=0.715 Sum_probs=158.2
Q ss_pred ccceeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757 19 IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA 98 (219)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~ 98 (219)
+..+++..+.....+.+....++|+++|++|+|||||+|+|++.. .....+.++++........+.++.++||||+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 3 IRDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYA 81 (195)
T ss_dssp CCCEEEEEEECSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSS
T ss_pred hhHHHHHHHhcChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECCcEEEEECCCCccc
Confidence 567788888888888888899999999999999999999999984 6777788888887777777889999999999888
Q ss_pred CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHH
Q 027757 99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSF 178 (219)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 178 (219)
.++..++..|..+...+++....+|++++|+|+++..+..+..+..|+...+.|+++|+||+|+.+..... ...++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~---~~~~~~ 158 (195)
T 3pqc_A 82 KVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERA---KKLEEH 158 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHH---HHHHHH
T ss_pred cCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHH---HHHHHH
Confidence 88888899999999999999888899999999998877777777888888899999999999997643211 112222
Q ss_pred HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+.+.. . ..++++++||+++.|+++++++|.+.+..
T Consensus 159 ~~~~~~-~-~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 159 RKVFSK-Y-GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp HHHHHS-S-CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHhh-c-CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 222221 1 23689999999999999999999987653
No 2
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.98 E-value=8.2e-31 Score=195.30 Aligned_cols=192 Identities=36% Similarity=0.565 Sum_probs=145.8
Q ss_pred ccceeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757 19 IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA 98 (219)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~ 98 (219)
+...++..+.....+.+....++|+++|++|+|||||+|+|++..+...+.+.++++.....+..+.++.+|||||+...
T Consensus 3 ~~~~~~~~s~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~ 82 (195)
T 1svi_A 3 VTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA 82 (195)
T ss_dssp CCCEEEEEEESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCC
T ss_pred ceeeEEEEecCChhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCcc
Confidence 45677888888888888888999999999999999999999998667778888888887777777789999999998766
Q ss_pred CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHH
Q 027757 99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSF 178 (219)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 178 (219)
......++.|..+...+++....+|++++|+|++++.+..+..+.+++...+.|+++|+||+|+.+.... ....+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~---~~~~~~~ 159 (195)
T 1svi_A 83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKW---DKHAKVV 159 (195)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH---HHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHH---HHHHHHH
Confidence 6666667888899999999876679999999999988887777778888889999999999999764311 1122333
Q ss_pred HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+.+.. ....+++++||+++.|+++++++|.+.+.
T Consensus 160 ~~~~~~--~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 160 RQTLNI--DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHTC--CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHHcc--cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 333332 23468999999999999999999988764
No 3
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.97 E-value=1.5e-30 Score=197.90 Aligned_cols=197 Identities=30% Similarity=0.541 Sum_probs=155.1
Q ss_pred ccccceeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeC
Q 027757 17 SQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDL 92 (219)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDt 92 (219)
..+...++..+.....+.+....++|+++|.+|+|||||+|+|++..........++++......... ..+.+|||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt 86 (223)
T 4dhe_A 7 FLLHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDL 86 (223)
T ss_dssp HHHHTCEEEEEECSGGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEEC
T ss_pred hhhhhhhHHhcccchhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcC
Confidence 33566788888888888888889999999999999999999999985456777788877776555554 58999999
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCch
Q 027757 93 PGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPD 172 (219)
Q Consensus 93 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~ 172 (219)
||+.........++.|..+...|++....+|++++|+|++++.+..+...+.++...++|+++|+||+|+...... .
T Consensus 87 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~---~ 163 (223)
T 4dhe_A 87 PGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQES---I 163 (223)
T ss_dssp CCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHH---H
T ss_pred CCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhH---H
Confidence 9987665666667888889999999988899999999999987777777888888889999999999999764321 1
Q ss_pred HhHHHHHHHHHhc----CCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 173 ENIKSFQQLIREN----YPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 173 ~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
...+.+.+.+... .....+++++||+++.|+++++++|.+.+..
T Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 164 NALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 1222333333322 1234689999999999999999999887643
No 4
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=2.3e-27 Score=179.48 Aligned_cols=155 Identities=16% Similarity=0.201 Sum_probs=114.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..+||+|+|.+|+|||||+++|+...+...+.++.+..........++ .+.+|||+| ++.|.++...
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaG----------qe~~~~l~~~ 81 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG----------LERFRSLIPS 81 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSC----------TTTCGGGHHH
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCC----------chhhhhHHHH
Confidence 468999999999999999999998877777777776554443333333 577899987 4556778899
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
|++. +|++++|+|+++..++... ..|+. ..++|+++|+||+|+.+. +.+..++.+++.+.++
T Consensus 82 ~~~~---a~~~ilv~di~~~~Sf~~i--~~~~~~i~~~~~~~~piilVgNK~Dl~~~--r~V~~~e~~~~a~~~~----- 149 (216)
T 4dkx_A 82 YIRD---SAAAVVVYDITNVNSFQQT--TKWIDDVRTERGSDVIIMLVGNKTDLADK--RQVSIEEGERKAKELN----- 149 (216)
T ss_dssp HHTT---CSEEEEEEETTCHHHHHTH--HHHHHHHHHHHTTSSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-----
T ss_pred Hhcc---ccEEEEEeecchhHHHHHH--HHHHHHHHHhcCCCCeEEEEeeccchHhc--CcccHHHHhhHHHHhC-----
Confidence 9998 9999999999998777653 23332 367999999999998764 5566777777777765
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++++||++|.|++++|+.|.+.+.
T Consensus 150 -~~~~e~SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 150 -VMFIETSAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp -CEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred -CeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 58999999999999999999987654
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.5e-25 Score=178.39 Aligned_cols=170 Identities=25% Similarity=0.305 Sum_probs=127.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSF 111 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~ 111 (219)
+...-.|+++|.+|+|||||+|+|++. .....++.+++|.... .... +.++.++||||+............+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 345668999999999999999999997 4566677777776532 2222 4479999999986443222333445566
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCcccHHH-HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDC-ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
...++.. +|++++|+|++++.+..+... +..+...+.|+++|+||+|+.... ....+..+.+...++...
T Consensus 86 ~~~~l~~---aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~------~~~~~~~~~l~~~~~~~~ 156 (308)
T 3iev_A 86 AKQSLEE---ADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPA------KNVLPLIDEIHKKHPELT 156 (308)
T ss_dssp HHHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSG------GGGHHHHHHHHHHCTTCC
T ss_pred HHHHhhc---CCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCH------HHHHHHHHHHHHhccCCC
Confidence 6677776 899999999999888877776 777777889999999999997321 234445555555554457
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++++||++|.|++++++++.+.+.
T Consensus 157 ~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 157 EIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 8999999999999999999988654
No 6
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=166.22 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=112.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||. ..+..+..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~ 93 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ----------ERFNSITS 93 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCS----------GGGHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCc----------HHHHHHHH
Confidence 4467999999999999999999999866556666666666555555544 6899999993 34566777
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+......+.|+++|+||+|+... +++..++.+++.+. + ..
T Consensus 94 ~~~~~---~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~----~-~~ 163 (192)
T 2il1_A 94 AYYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD--REITRQQGEKFAQQ----I-TG 163 (192)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHT----S-TT
T ss_pred HHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc--cccCHHHHHHHHHh----c-CC
Confidence 88877 89999999999876655431 122222357999999999999754 23333444444332 1 12
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+++++||++|.|+++++++|.+.+.+
T Consensus 164 ~~~~~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 164 MRFCEASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999887654
No 7
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=167.29 Aligned_cols=168 Identities=21% Similarity=0.274 Sum_probs=108.8
Q ss_pred CCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhh
Q 027757 30 RAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRM 106 (219)
Q Consensus 30 ~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~ 106 (219)
..+.......++|+++|++|+|||||+++|++..+...+.++.+.+........++ .+.+|||||..
T Consensus 19 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------- 88 (199)
T 2p5s_A 19 SAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE---------- 88 (199)
T ss_dssp ---------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT----------
T ss_pred ccCCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc----------
Confidence 33444556679999999999999999999999865566666666555444444443 58899999943
Q ss_pred hHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEccccccc----ccCCCchHhHHHH
Q 027757 107 DWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKV----AKGRRPDENIKSF 178 (219)
Q Consensus 107 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~ 178 (219)
.+..+...+++. +|++|+|+|++++.+..... .+..+ ...++|+++|+||+|+.+. ..+.+..+..+++
T Consensus 89 ~~~~~~~~~~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~ 165 (199)
T 2p5s_A 89 RFRSIAKSYFRK---ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL 165 (199)
T ss_dssp TCHHHHHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH
T ss_pred chhhhHHHHHhh---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHH
Confidence 335667777777 89999999999876654432 11122 2257999999999999742 1234444555555
Q ss_pred HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
....+ ++++++||+++.|+++++++|.+.+.+
T Consensus 166 ~~~~~------~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 166 AMTYG------ALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHT------CEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred HHHcC------CeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 55443 589999999999999999999887653
No 8
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.93 E-value=6.2e-25 Score=160.87 Aligned_cols=158 Identities=21% Similarity=0.212 Sum_probs=115.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+++|++..+.....++.+.+........+. .+.+|||||. ..+.....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~ 82 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ----------ERFRAVTR 82 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG----------GGTCHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC----------hHhhhhHH
Confidence 3468999999999999999999999866665666666665554444443 6899999994 23345667
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-H---HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-C---ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~---~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... . +......+.|+++|+||+|+... +....++..++.+..+
T Consensus 83 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------ 151 (179)
T 1z0f_A 83 SYYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG------ 151 (179)
T ss_dssp HHHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------
T ss_pred HHhcc---CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc--cccCHHHHHHHHHHcC------
Confidence 77777 89999999999876554432 1 12222368999999999999754 2233344444444322
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++++||+++.|++++++++.+.+.
T Consensus 152 ~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 152 LLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 58999999999999999999988654
No 9
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.93 E-value=7.2e-25 Score=158.55 Aligned_cols=156 Identities=19% Similarity=0.201 Sum_probs=111.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+++|++..+.....++.+... ......++ .+.++||||.. .+..+...+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~ 71 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTE----------QFASMRDLY 71 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTT----------CCHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCch----------hhHHHHHHH
Confidence 47999999999999999999998765554555444333 22333333 48899999943 235566777
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++++|+|++++.+.... .+.......+.|+++|+||+|+... .+...+....+.+..+ .
T Consensus 72 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~ 140 (167)
T 1kao_A 72 IKN---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE--REVSSSEGRALAEEWG------C 140 (167)
T ss_dssp HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT------S
T ss_pred hcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc--ccCCHHHHHHHHHHhC------C
Confidence 777 8999999999986554332 1222233358999999999998754 3333445555555443 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+++++||+++.|+++++++|.+.+.+
T Consensus 141 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 141 PFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp CEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 89999999999999999999887754
No 10
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.93 E-value=3.3e-25 Score=160.57 Aligned_cols=157 Identities=13% Similarity=0.060 Sum_probs=96.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
.+||+++|++|+|||||+++|++. ......+..+++........+ ..+.++||||.. .+..+...++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~ 70 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD----------GGRWLPGHCM 70 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCc----------cchhhhhhhh
Confidence 579999999999999999999986 455556666666543322222 257899999943 2345566677
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+. +|++++|+|++++.+..... ....+. ..++|+++|+||+|+.+. ..+..+..+.+..... ++
T Consensus 71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~~ 139 (166)
T 3q72_A 71 AM---GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD------CK 139 (166)
T ss_dssp -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSS--CCSCHHHHHHHHHHTT------CE
T ss_pred hh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc--cccCHHHHHHHHHHhC------Cc
Confidence 66 89999999999876544321 112222 257999999999999764 2333344444443322 58
Q ss_pred eEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++++||++|.|++++++++.+.+...
T Consensus 140 ~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 140 FIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp EEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987664
No 11
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.93 E-value=1.3e-24 Score=157.39 Aligned_cols=156 Identities=16% Similarity=0.169 Sum_probs=110.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+++|++..+.....++.+..... ....++ .+.++||||.. .+..+...+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~ 72 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTAGQE----------DYAAIRDNY 72 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCC-------------CHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEE-EEEECCEEEEEEEEECCCcc----------hhHHHHHHH
Confidence 5799999999999999999999876555555555444332 223333 68899999942 235677778
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++++|+|++++.+.... .+.......++|+++|+||+|+.+.. +...++...+.+..+ +
T Consensus 73 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~------~ 141 (168)
T 1u8z_A 73 FRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--QVSVEEAKNRADQWN------V 141 (168)
T ss_dssp HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC--CSCHHHHHHHHHHHT------C
T ss_pred hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC--ccCHHHHHHHHHHcC------C
Confidence 877 8999999999986654332 11122222589999999999997642 333445555554433 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+++++||+++.|++++++++.+.+.+
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 142 NYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 89999999999999999999887653
No 12
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=162.01 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=115.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....+..+.+.....+..++ .+.+|||||.. .+..+..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 83 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTITS 83 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGCTTHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH----------hhhhhHH
Confidence 3468999999999999999999999866666666666666555555544 68999999942 2234556
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+..+ ...+.|+++|+||+|+.... .+..+..+++.+.++
T Consensus 84 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~------ 152 (196)
T 3tkl_A 84 SYYRG---AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK--VVDYTTAKEFADSLG------ 152 (196)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC--CSCHHHHHHHHHHTT------
T ss_pred HHHhh---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc--ccCHHHHHHHHHHcC------
Confidence 67766 89999999999866544321 11112 23578999999999997642 233344444444433
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++++++||+++.|+++++++|.+.+...
T Consensus 153 ~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 153 IPFLETSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp CCEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999877654
No 13
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=162.45 Aligned_cols=160 Identities=16% Similarity=0.153 Sum_probs=114.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSF 111 (219)
Q Consensus 35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~ 111 (219)
+....++|+|+|++|+|||||+++|++..+...+.++.+..... .+..++ .+.+|||||.. .+..+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~----------~~~~~ 78 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTAGQE----------DYAAI 78 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEE-EEEETTEEEEEEEEECCCTT----------CCHHH
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEE-EEEECCEEEEEEEEcCCChh----------hhHHH
Confidence 34557899999999999999999999876555555555544332 233333 68899999953 23566
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
...+++. +|++++|+|++++.+..... +.......++|+++|+||+|+.+. +++..++..++.+...
T Consensus 79 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~--- 150 (206)
T 2bov_A 79 RDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN--- 150 (206)
T ss_dssp HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT---
T ss_pred HHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc--ccccHHHHHHHHHHhC---
Confidence 7778877 89999999999865543321 111222248999999999999764 2334445555554433
Q ss_pred CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 187 PHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+++++||++|.|+++++++|.+.+..
T Consensus 151 ---~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 151 ---VNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp ---CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ---CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999886643
No 14
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.93 E-value=1.9e-25 Score=166.28 Aligned_cols=161 Identities=14% Similarity=0.078 Sum_probs=116.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+++|++..+...+.++.+.+.... ...++ .+.+|||||.. .|..+..
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 89 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHV-MKYKNEEFILHLWDTAGQE----------EYDRLRP 89 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EEETTEEEEEEEEEECCSG----------GGTTTGG
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEE-EEECCEEEEEEEEECCCcH----------HHHHHhH
Confidence 4468999999999999999999999865555555555444322 22232 46899999942 2334445
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+.... .....+.. .++|+++|+||+|+.....+.+..++.+++.+.++.
T Consensus 90 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----- 161 (194)
T 3reg_A 90 LSYAD---SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC----- 161 (194)
T ss_dssp GGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC-----
T ss_pred hhccC---CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC-----
Confidence 56666 8999999999987665442 12222222 478999999999998765566666777777766542
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
..++++||++|.|++++++++.+.+..
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 162 VAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred CEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 239999999999999999999887654
No 15
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=7e-25 Score=159.18 Aligned_cols=155 Identities=21% Similarity=0.312 Sum_probs=114.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+++|++..+.....++.+.+........++ .+.++||||.. .+......+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~ 72 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE----------RFASLAPXY 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh----------hhhhhhhhh
Confidence 46899999999999999999998866666677777666555555444 68999999942 234455667
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEccccccccc-CCCchHhHHHHHHHHHhcCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAK-GRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 188 (219)
++. +|++++|+|++++.+.... ..|+. ..+.|+++|+||+|+..... .++..+..+++.+..+
T Consensus 73 ~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~----- 142 (170)
T 1ek0_A 73 YRN---AQAALVVYDVTKPQSFIKA--RHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG----- 142 (170)
T ss_dssp HTT---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-----
T ss_pred hcc---CcEEEEEEecCChHHHHHH--HHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-----
Confidence 766 8999999999987554432 22222 25789999999999976432 3344444555544433
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.+++++||+++.|+++++++|.+.+
T Consensus 143 -~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 143 -LLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred -CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999998754
No 16
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.93 E-value=9.6e-25 Score=159.38 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=106.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|++|+|||||+++|++.. .....+..+.+........++ .+.+|||||.... .+..+...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~ 73 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL--------DKSWSQES 73 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCC-CccccCccccceeEEEEEECCEEEEEEEEecCCCCcc--------chhhhHHh
Confidence 35799999999999999999999974 444445566665444444444 5789999996421 12345566
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+++. +|++++|+|++++.+..... ....+.. .++|+++|+||+|+.+.. ++..++...+....+
T Consensus 74 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~--~v~~~~~~~~~~~~~------ 142 (175)
T 2nzj_A 74 CLQG---GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCR--EVSVEEGRACAVVFD------ 142 (175)
T ss_dssp TTTS---CSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTC--CSCHHHHHHHHHHHT------
T ss_pred hccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcccc--ccCHHHHHHHHHHcC------
Confidence 6666 89999999999876544322 2222222 379999999999997642 333344444444332
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++++++||++|.|+++++++|.+.+...
T Consensus 143 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 143 CKFIETSATLQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp SEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999998876543
No 17
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.93 E-value=2e-24 Score=161.90 Aligned_cols=159 Identities=17% Similarity=0.166 Sum_probs=115.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....++.+.+........++ .+.+|||||. +.|..+..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~ 93 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ----------ERFRSITQ 93 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS----------GGGHHHHG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHH
Confidence 3468999999999999999999998765555556666555444444444 6899999994 34566677
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHH---HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CAN---WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~---~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+. .....++|+++|+||+|+... +++..++.+.+.+..+
T Consensus 94 ~~~~~---~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~------ 162 (201)
T 2ew1_A 94 SYYRS---ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER--REVSQQRAEEFSEAQD------ 162 (201)
T ss_dssp GGSTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT------
T ss_pred HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC------
Confidence 77776 89999999999876544321 111 112357899999999999754 3334445555544433
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||++|.|+++++++|.+.+..
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 163 MYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999876543
No 18
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.93 E-value=1.3e-24 Score=159.48 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=111.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
....++|+++|.+|+|||||+++|++..+.....++.+.... .....++ .+.+|||||.... ..+.
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~ 74 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEF----------GAMR 74 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTT----------SCCH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhh----------HHHH
Confidence 345689999999999999999999998655555555544433 2233333 6889999995421 2334
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
..+++. +|++++|+|++++.+.... .+.......+.|+++|+||+|+.... .+..+....+....
T Consensus 75 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~v~~~~~~~~~~~~----- 144 (181)
T 2fn4_A 75 EQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR--QVPRSEASAFGASH----- 144 (181)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGC--CSCHHHHHHHHHHT-----
T ss_pred HHHHhh---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--ccCHHHHHHHHHHc-----
Confidence 556666 8999999999986554332 11122234689999999999997642 23334444443332
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.++++++||+++.|+++++++|.+.+...
T Consensus 145 -~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 145 -HVAYFEASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp -TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred -CCeEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 25899999999999999999999877654
No 19
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=162.74 Aligned_cols=159 Identities=15% Similarity=0.145 Sum_probs=110.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+++|++..+.....++.+.......+..++ .+.+|||||. +.|..++.
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~ 96 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ----------ERFRTITQ 96 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTC----------GGGHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc----------HhHHHHHH
Confidence 4468999999999999999999998765544445544444334444443 7899999994 34567788
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+..+. ..++|+++|+||+|+... +.+..++.+++.+..+
T Consensus 97 ~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~------ 165 (201)
T 2hup_A 97 SYYRS---ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL--REVSLAEAQSLAEHYD------ 165 (201)
T ss_dssp HHHTT---CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------
T ss_pred HHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc--cccCHHHHHHHHHHcC------
Confidence 88887 89999999999866544321 122222 257999999999999764 2333444555544432
Q ss_pred C-CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 P-PWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~-~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
. +++++||+++.|+++++++|.+.+..
T Consensus 166 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 166 ILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 4 89999999999999999999887654
No 20
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.92 E-value=2.1e-24 Score=158.95 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=114.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....++.+... ......++ .+.+|||||.. .+..+..
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 84 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQE----------EFSAMRE 84 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCG----------GGCSSHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCch----------hhHHHHH
Confidence 4568999999999999999999998765555555555444 33333333 35679999943 2234456
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
.+++. +|++++|+|++++.+..... +.......++|+++|+||+|+... +.+..++.+++.+.++
T Consensus 85 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~----- 154 (183)
T 3kkq_A 85 QYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL--RKVTRDQGKEMATKYN----- 154 (183)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-----
T ss_pred HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc--cCcCHHHHHHHHHHhC-----
Confidence 66777 89999999999876554421 122233478999999999998763 3445555666666554
Q ss_pred CCCeEEeecC-CCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSV-TGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~-~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+ ++.|+++++++|.+.+.+
T Consensus 155 -~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 155 -IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp -CCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred -CeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 689999999 999999999999987653
No 21
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.92 E-value=2e-24 Score=159.38 Aligned_cols=159 Identities=21% Similarity=0.192 Sum_probs=113.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....++.+.+........++ .+.+|||||. ..+.....
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~ 77 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ----------ERFRSVTR 77 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCS----------GGGHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc----------HHHHHHHH
Confidence 3468999999999999999999998765555555555444444444444 6889999994 33456667
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HH---HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CA---NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~---~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+ ......+.|+++|+||+|+... +.+...+..++.+.. .
T Consensus 78 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~------~ 146 (186)
T 2bme_A 78 SYYRG---AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD--REVTFLEASRFAQEN------E 146 (186)
T ss_dssp TTSTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHT------T
T ss_pred HHHhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc--cccCHHHHHHHHHHc------C
Confidence 77766 89999999999866554432 11 2222468999999999999754 233334444444332 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|++++++++.+.+..
T Consensus 147 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 147 LMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999876543
No 22
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.92 E-value=1.6e-24 Score=158.83 Aligned_cols=155 Identities=15% Similarity=0.118 Sum_probs=110.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...+||+++|++|+|||||+++|++..+.. +.++.+.... .....++ .+.+|||||... .
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~---------------~ 67 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYK-KEMLVDGQTHLVLIREEAGAPD---------------A 67 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEE-EEEEETTEEEEEEEEECSSSCC---------------H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEE-EEEEECCEEEEEEEEECCCCch---------------h
Confidence 346899999999999999999999975543 5555554332 2233333 578899999531 2
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHH-HHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDC-ANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
.+++. +|++|+|+|++++.+...... ..++.. .++|+++|+||+|+.+...+.+..++.+++.+...
T Consensus 68 ~~~~~---~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~--- 141 (178)
T 2iwr_A 68 KFSGW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK--- 141 (178)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS---
T ss_pred HHHHh---CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc---
Confidence 45556 899999999998776554322 112322 47899999999999644445555666666655442
Q ss_pred CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 187 PHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
..+++++||++|.|++++|+++.+.+..
T Consensus 142 --~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 142 --RCSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp --SEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred --CCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 1589999999999999999999876543
No 23
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.92 E-value=9.9e-25 Score=158.48 Aligned_cols=157 Identities=18% Similarity=0.220 Sum_probs=106.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+++|++..+.....++.+.+.....+..++ .+.++||||... +......+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~ 72 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER----------FRTITTAY 72 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGG----------TSCCCHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh----------hhhhHHHH
Confidence 57999999999999999999998765554555555444444444443 688999999432 12233455
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
++. +|++++|+|++++.+..... .+..+. ..+.|+++|+||+|+.. +....+..+++.+..+ .+
T Consensus 73 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~------~~ 140 (170)
T 1g16_A 73 YRG---AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET---RVVTADQGEALAKELG------IP 140 (170)
T ss_dssp HTT---EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT------CC
T ss_pred hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc---CccCHHHHHHHHHHcC------Ce
Confidence 555 89999999999866543321 112222 25789999999999943 3334455555555443 58
Q ss_pred eEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++++||+++.|+++++++|.+.+...
T Consensus 141 ~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 141 FIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999877653
No 24
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.92 E-value=6.6e-25 Score=160.99 Aligned_cols=158 Identities=20% Similarity=0.222 Sum_probs=111.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....+..+.+........++ .+.++||||.... ..+..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 76 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF----------RTITS 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC----------SSCCG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhh----------hhhHH
Confidence 4468999999999999999999999865555555555555555554444 6899999994321 12234
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
.+++. +|++|+|+|++++.+.... ..|+.. .+.|+++|+||+|+.... .........+.....
T Consensus 77 ~~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~----- 144 (181)
T 3tw8_B 77 TYYRG---THGVIVVYDVTSAESFVNV--KRWLHEINQNCDDVCRILVGNKNDDPERK--VVETEDAYKFAGQMG----- 144 (181)
T ss_dssp GGGTT---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHCTTSEEEEEEECTTCGGGC--CSCHHHHHHHHHHHT-----
T ss_pred HHhcc---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECCCCchhc--ccCHHHHHHHHHHcC-----
Confidence 44555 8999999999986555432 223332 468999999999987642 233344455554443
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++++++||++|.|+++++++|.+.+...
T Consensus 145 -~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 145 -IQLFETSAKENVNVEEMFNCITELVLRA 172 (181)
T ss_dssp -CCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred -CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999998876543
No 25
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.92 E-value=2.7e-24 Score=157.36 Aligned_cols=159 Identities=18% Similarity=0.149 Sum_probs=112.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||. ..+..+..
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~ 74 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ----------ERFRSLRT 74 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCC----------GGGHHHHG
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc----------hhhhhhHH
Confidence 3468999999999999999999998765556666666655555555554 6899999994 33456677
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
.+++. +|++++|+|++++.+..... ....+. ..+.|+++|+||+|+.. +.+..+...++.+. .
T Consensus 75 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~---~ 145 (177)
T 1wms_A 75 PFYRG---SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRD---N 145 (177)
T ss_dssp GGGTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHH---T
T ss_pred HHHhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc---cccCHHHHHHHHHh---c
Confidence 77776 89999999999876544321 111111 16789999999999873 23334444444432 1
Q ss_pred CCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
...+++++||++|.|++++++++.+.+..
T Consensus 146 --~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 146 --GDYPYFETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp --TCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred --CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 23689999999999999999999887643
No 26
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.92 E-value=2.5e-24 Score=158.73 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=111.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+...+.++.+..... .+..++ .+.+|||||.. .+..+..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 84 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTAGQE----------DYAAIRD 84 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEE-EEEETTEEEEEEEEECCCTT----------CCHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEE-EEEECCEEEEEEEEECCCCc----------ccHHHHH
Confidence 346899999999999999999999876555555554444332 223333 68899999953 2356677
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
.+++. +|++++|+|++++.+.... .+.......++|+++|+||+|+.+.. .+..++..++.+...
T Consensus 85 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~----- 154 (187)
T 2a9k_A 85 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--QVSVEEAKNRAEQWN----- 154 (187)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGC--CSCHHHHHHHHHHTT-----
T ss_pred HHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC--ccCHHHHHHHHHHcC-----
Confidence 78877 8999999999986554332 11222223589999999999997642 233344444444322
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|+++++++|.+.+..
T Consensus 155 -~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 155 -VNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp -CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -CeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999887654
No 27
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.92 E-value=1.7e-24 Score=157.19 Aligned_cols=155 Identities=18% Similarity=0.273 Sum_probs=113.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+|+|++..+.....++.+.+........+. .+.+|||||.. .+..+...+
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~ 75 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE----------RFRALAPMY 75 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGTHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch----------hhhcccHhh
Confidence 57999999999999999999999876667777777776555444443 68899999962 233455666
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH-HHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL-DCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
++. +|++++|+|++++.+.... ..+..+. ....|+++|+||+|+.+. +++..+....+.+... .+
T Consensus 76 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~--~~v~~~~~~~~~~~~~------~~ 144 (170)
T 1z0j_A 76 YRG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV--REVMERDAKDYADSIH------AI 144 (170)
T ss_dssp HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------CE
T ss_pred CcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc--cccCHHHHHHHHHHcC------CE
Confidence 666 8999999999987654432 1122222 367899999999999764 2333444444444322 58
Q ss_pred eEEeecCCCCChHHHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++++||+++.|+++++++|.+.+
T Consensus 145 ~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 145 FVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998765
No 28
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.92 E-value=4.3e-24 Score=158.35 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=114.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE-eeEEEec------------CeEEEEeCCCCCCCCCCcc
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL-INHFLVN------------KSWYIVDLPGYGFAKAPDV 103 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~-~~~~~~~------------~~~~liDtpg~~~~~~~~~ 103 (219)
...++|+++|++|+|||||+++|++..+.....++.+.+.. ......+ ..+.++||||.
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~-------- 80 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL-------- 80 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS--------
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc--------
Confidence 44689999999999999999999987655555555555443 2223222 36899999995
Q ss_pred hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHH
Q 027757 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSF 178 (219)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~ 178 (219)
..+......+++. +|++|+|+|++++.+..... .+..+.. .++|+++|+||+|+.+. +.+..+...++
T Consensus 81 --~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~ 153 (195)
T 3bc1_A 81 --ERFRSLTTAFFRD---AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ--RAVKEEEAREL 153 (195)
T ss_dssp --GGGHHHHHHTTTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG--CCSCHHHHHHH
T ss_pred --HHHHHHHHHHHcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc--cccCHHHHHHH
Confidence 3345667777776 89999999999876654421 1222221 58999999999999764 23344555555
Q ss_pred HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+..+ ++++++||+++.|+++++++|.+.+..
T Consensus 154 ~~~~~------~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 154 AEKYG------IPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp HHHHT------CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHcC------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55443 589999999999999999999886643
No 29
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.92 E-value=1.6e-24 Score=160.93 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=110.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....++.+.+........++ .+.+|||||... |..+..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 88 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES----------FRSITR 88 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG----------TSCCCH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh----------hhhhHH
Confidence 4468999999999999999999999765555555556555544444444 689999999431 223345
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+..+. ..+.|+++|+||+|+... +.+..++.+.+.+..+
T Consensus 89 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~------ 157 (191)
T 2a5j_A 89 SYYRG---AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR--RDVKREEGEAFAREHG------ 157 (191)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT------
T ss_pred HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCc--cccCHHHHHHHHHHcC------
Confidence 56666 89999999999866554422 122222 258999999999999754 3334455555555443
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|+++++++|.+.+.+
T Consensus 158 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 158 LIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999876543
No 30
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.92 E-value=1.3e-24 Score=157.36 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=108.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+++|++..+.....++.+.... .....++ .+.+|||||... +..+...+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~ 71 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ----------FTAMRDLY 71 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCS----------STTHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence 479999999999999999999987554444444443332 2222222 588999999532 23455667
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++++|+|++++.+..... +.......+.|+++|+||+|+.+. +.+..+...++.+.+. ..
T Consensus 72 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-----~~ 141 (167)
T 1c1y_A 72 MKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWC-----NC 141 (167)
T ss_dssp HHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-----SC
T ss_pred hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc--ccCCHHHHHHHHHHcc-----CC
Confidence 777 89999999999865544321 112222358999999999999764 2333444554444321 26
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++++||++|.|+++++++|.+.+.
T Consensus 142 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 142 AFLESSAKSKINVNEIFYDLVRQIN 166 (167)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred cEEEecCCCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999988653
No 31
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.92 E-value=2e-24 Score=160.07 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=111.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHH-HHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWS-SFT 112 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~-~~~ 112 (219)
...++|+++|.+|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||. +.+. .+.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~ 87 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ----------ERFRKSMV 87 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS----------HHHHTTTH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhh
Confidence 4468999999999999999999998766555666666555544444444 6899999994 2334 556
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
..+++. +|++|+|+|++++.+..... +.......+.|+++|+||+|+... +++..+..+.+.+..+
T Consensus 88 ~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~---- 158 (189)
T 1z06_A 88 QHYYRN---VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS---- 158 (189)
T ss_dssp HHHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT----
T ss_pred HHHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc--ceeCHHHHHHHHHHcC----
Confidence 677776 89999999999865544421 122222467999999999999754 2333344444443322
Q ss_pred CCCCeEEeecCCC---CChHHHHHHHHHHHh
Q 027757 188 HHPPWIMTSSVTG---LGRDELLLHMSQLRN 215 (219)
Q Consensus 188 ~~~~~~~~Sa~~~---~~v~el~~~l~~~~~ 215 (219)
++++++||+++ .|+++++++|.+.+.
T Consensus 159 --~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 159 --MPLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp --CCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred --CEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 58999999999 999999999977653
No 32
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.92 E-value=3.6e-24 Score=160.34 Aligned_cols=157 Identities=15% Similarity=0.193 Sum_probs=116.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|++|+|||||+++|++..+.....++.+.+........+. .+.+|||||. ..+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~~ 76 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL----------ERYRTITTA 76 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCS----------GGGHHHHHT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCc----------hhhcchHHH
Confidence 357999999999999999999999866566666666666544444433 6899999995 234667777
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
+++. +|++|+|+|++++.+..... .+..+.. .+.|+++|+||+|+... +.+..+..+++.+.++ +
T Consensus 77 ~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~ 145 (203)
T 1zbd_A 77 YYRG---AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG------F 145 (203)
T ss_dssp TGGG---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS--CCSCHHHHHHHHHHHT------C
T ss_pred hhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc--cccCHHHHHHHHHHCC------C
Confidence 7777 89999999999865543321 1122222 57999999999999754 2334455555555543 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++++||+++.|+++++++|.+.+.
T Consensus 146 ~~~~~Sa~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 146 EFFEASAKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp EEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999987654
No 33
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.92 E-value=9.1e-25 Score=160.01 Aligned_cols=158 Identities=17% Similarity=0.118 Sum_probs=111.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
..++|+++|++|+|||||+++|++..+...+.++.+..........+ ..+.+|||||... +..+..
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~ 74 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI----------GGKMLD 74 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT----------TCTTHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc----------ccchhh
Confidence 46899999999999999999999976555555665544444434333 3789999999532 223456
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc-----CCCc-EEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR-----NNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
.+++. +|++|+|+|++++.+..... .+..+.. .+.| +++|+||+|+.+. +.+..+..+++.+..+
T Consensus 75 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~--- 146 (178)
T 2hxs_A 75 KYIYG---AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM--RTIKPEKHLRFCQENG--- 146 (178)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT---
T ss_pred HHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc--cccCHHHHHHHHHHcC---
Confidence 66666 89999999999876654432 1222222 2455 8999999999764 2333445555555443
Q ss_pred CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 187 PHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|+++++++|.+.+..
T Consensus 147 ---~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 147 ---FSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp ---CEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred ---CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 589999999999999999999887654
No 34
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=6.7e-25 Score=162.93 Aligned_cols=160 Identities=16% Similarity=0.190 Sum_probs=118.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...+||+|+|.+|+|||||+++|++..+.....++.+.+........+. .+.+||||| ++.+..+..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~ 90 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG----------QERYRTITT 90 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHH----------HHHCHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------hHHHHHHHH
Confidence 4478999999999999999999999765555555555555544444333 588999987 455677788
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+..+. ..+.|+++|+||+|+... +.+..+..+.+.+..+
T Consensus 91 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------ 159 (191)
T 3dz8_A 91 AYYRG---AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE--RVVPTEKGQLLAEQLG------ 159 (191)
T ss_dssp HHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT------
T ss_pred HHHcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC------
Confidence 88887 89999999999865554322 122222 258999999999998654 3344455555555543
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++++++||++|.|+++++++|.+.+...
T Consensus 160 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 160 FDFFEASAKENISVRQAFERLVDAICDK 187 (191)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999998876543
No 35
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.92 E-value=1.3e-23 Score=160.33 Aligned_cols=171 Identities=19% Similarity=0.150 Sum_probs=107.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE--e-cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL--V-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+|+|++..+. ..+.++++....... . +..+.+|||||.............+..+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~- 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD--VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT- 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE--EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHH-
Confidence 55789999999999999999999997533 344455554433222 2 24789999999753221111111133332
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH---HHHHHhccC--CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL---DCANWLGRN--NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~---~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
.++.. +|++|+|+|++++.+.... ..+..+... ++|+++|+||+|+..... .... ..+..+.+....+.
T Consensus 104 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~--~~~~-~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 104 ALAHI---NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS--LSID-NKLLIKQILDNVKN 177 (228)
T ss_dssp HHHTS---SEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C--CCHH-HHHHHHHHHHHCCS
T ss_pred Hhhcc---ccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh--hHHH-HHHHHHHHHHhcCC
Confidence 33444 7999999999998775422 233444443 899999999999976432 2222 22223333322222
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.++++++||++|.|+++++++|.+.+..
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 3589999999999999999999887654
No 36
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.92 E-value=3.4e-24 Score=158.41 Aligned_cols=160 Identities=14% Similarity=0.115 Sum_probs=113.5
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHH
Q 027757 34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSS 110 (219)
Q Consensus 34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~ 110 (219)
.+....+||+++|++|+|||||+++|++..+.....++.+ .. ......++ .+.+|||||... +.
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~----------~~- 81 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPE----------LQ- 81 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCC----------HH-
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChh----------hh-
Confidence 3445678999999999999999999999866555555422 22 22333333 567899999531 12
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757 111 FTKGYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185 (219)
Q Consensus 111 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
+++. +|++++|+|++++.+.... ..+..+.. .+.|+++|+||+|+.....+.+..++.+++.+.++.
T Consensus 82 ----~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~- 153 (184)
T 3ihw_A 82 ----FAAW---VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKR- 153 (184)
T ss_dssp ----HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTT-
T ss_pred ----eecC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCC-
Confidence 5555 8999999999987665542 22222222 468999999999997555566666666666655431
Q ss_pred CCCCCCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757 186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWD 218 (219)
Q Consensus 186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~~ 218 (219)
.+++++||+++.|++++|+++.+.+...+
T Consensus 154 ----~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 154 ----CTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp ----CEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred ----CeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 58999999999999999999998766543
No 37
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.92 E-value=1.4e-24 Score=160.84 Aligned_cols=159 Identities=16% Similarity=0.195 Sum_probs=114.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....++.+.+........+. .+.+|||||.... .....
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~ 89 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY----------RTITT 89 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSS----------CCSGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHH----------hhhHH
Confidence 3468999999999999999999999866566666666665544444333 6899999995422 11224
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+..+.. .+.|+++|+||+|+... +.+..+..+++.+.++
T Consensus 90 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------ 158 (189)
T 2gf9_A 90 AYYRG---AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE--RVVPAEDGRRLADDLG------ 158 (189)
T ss_dssp GGGTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT------
T ss_pred HhccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC------
Confidence 45555 89999999999866554431 2222222 47999999999999764 3334455556655543
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|+++++++|.+.+.+
T Consensus 159 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 159 FEFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999887644
No 38
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.92 E-value=1.1e-24 Score=162.49 Aligned_cols=167 Identities=14% Similarity=0.164 Sum_probs=108.2
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757 33 DCPKDDRPEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSF 111 (219)
Q Consensus 33 ~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~ 111 (219)
..+....++|+|+|.+|+|||||+++|++..+.. .+.++.+.+... .......+.+|||||.. .+..+
T Consensus 11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~----------~~~~~ 79 (199)
T 4bas_A 11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET-FEKGRVAFTVFDMGGAK----------KFRGL 79 (199)
T ss_dssp -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE-EEETTEEEEEEEECCSG----------GGGGG
T ss_pred ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE-EEeCCEEEEEEECCCCH----------hHHHH
Confidence 3445667899999999999999999999986554 446666633322 12223478999999953 23344
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhcc-----------CCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLGR-----------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ 179 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-----------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~ 179 (219)
+..+++. +|++|+|+|++++.+.... ..+..+.. .++|+++|+||+|+..... .+++.+..
T Consensus 80 ~~~~~~~---~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~~~ 152 (199)
T 4bas_A 80 WETYYDN---IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT----AAELVEIL 152 (199)
T ss_dssp GGGGCTT---CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC----HHHHHHHH
T ss_pred HHHHHhc---CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC----HHHHHHHh
Confidence 4566665 8999999999987765443 11222222 2899999999999976421 12222221
Q ss_pred HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
..........++++++||+++.|+++++++|.+.+...
T Consensus 153 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 153 DLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp THHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred cchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 11110012346899999999999999999999876543
No 39
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=1.4e-24 Score=161.40 Aligned_cols=156 Identities=20% Similarity=0.292 Sum_probs=114.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+...+.++.+.+........+. .+.+|||||.. .+.....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 90 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE----------RFHSLAP 90 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG----------GGGGGTH
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch----------hhHhhhH
Confidence 3468999999999999999999999866667778888776655554433 68999999942 2334456
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
.+++. +|++|+|+|++++.+.... ..|+. ..++|+++|+||+|+.+. +.+..++.+++.+..
T Consensus 91 ~~~~~---~d~iilV~d~~~~~s~~~~--~~~~~~i~~~~~~~~piiiv~NK~Dl~~~--~~v~~~~~~~~~~~~----- 158 (192)
T 2fg5_A 91 MYYRG---SAAAVIVYDITKQDSFYTL--KKWVKELKEHGPENIVMAIAGNKCDLSDI--REVPLKDAKEYAESI----- 158 (192)
T ss_dssp HHHTT---CSEEEEEEETTCTHHHHHH--HHHHHHHHHHSCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHTT-----
T ss_pred Hhhcc---CCEEEEEEeCCCHHHHHHH--HHHHHHHHHhCCCCCcEEEEEECcccccc--cccCHHHHHHHHHHc-----
Confidence 66666 8999999999987654432 22322 247999999999999753 233334444444322
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.++++++||+++.|+++++++|.+.+.
T Consensus 159 -~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 159 -GAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp -TCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred -CCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 268999999999999999999987653
No 40
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.92 E-value=3e-24 Score=160.45 Aligned_cols=158 Identities=20% Similarity=0.173 Sum_probs=109.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--------------------------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-------------------------------- 84 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------------------------- 84 (219)
...++|+++|++|+|||||+++|++..+.....++.+..........+
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457899999999999999999999986555555555443332222221
Q ss_pred --------CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc-cCCCcEE
Q 027757 85 --------KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG-RNNIPLT 154 (219)
Q Consensus 85 --------~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-~~~~p~i 154 (219)
..+.+|||||.. .|......+++. +|++|+|+|++++.+..... .+..+. ....|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~~---~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pii 151 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQE----------RYASIVPLYYRG---ATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIII 151 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGG----------GCTTTHHHHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred cccCccceeEEEEEECCCcH----------HHHHHHHHHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence 468899999942 223445666666 89999999999876554422 122222 2459999
Q ss_pred EEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 155 FVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 155 iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+|+||+| ... +.+..++..++.+.. .++++++||+++.|+++++++|.+.+.+
T Consensus 152 lv~NK~D-~~~--~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 152 LVANKID-KNK--FQVDILEVQKYAQDN------NLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp EEEECTT-CC---CCSCHHHHHHHHHHT------TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEECCC-ccc--ccCCHHHHHHHHHHc------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 9999999 322 333444555554442 2589999999999999999999887654
No 41
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.92 E-value=2.8e-25 Score=163.32 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=112.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+...+.++.+.+. ......++ .+.+|||||..... .+..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~ 72 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYS----------IFPQ 72 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTC----------CCCG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhh----------HHHH
Confidence 4468999999999999999999997766666777776655 33333343 57899999964321 1223
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
.+++. +|++++|+|++++.+..... +.......++|+++|+||+|+... +.+..++.+++.+.++
T Consensus 73 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~----- 142 (181)
T 3t5g_A 73 TYSID---INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME--RVISYEEGKALAESWN----- 142 (181)
T ss_dssp GGTTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-----
T ss_pred HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc--ceecHHHHHHHHHHhC-----
Confidence 44555 89999999999866554321 122222357999999999998653 3344455555555443
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.+++++||+++.|++++++++.+.+...
T Consensus 143 -~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 170 (181)
T 3t5g_A 143 -AAFLESSAKENQTAVDVFRRIILEAEKM 170 (181)
T ss_dssp -CEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred -CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999877654
No 42
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.92 E-value=2.5e-24 Score=156.40 Aligned_cols=159 Identities=15% Similarity=0.106 Sum_probs=101.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.+||+++|++|+|||||+++|++...........+..........++ .+.+|||||..... ..+...+
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~ 72 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG---------GWLQDHC 72 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC-----------------CHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccc---------hhhhhhh
Confidence 47999999999999999999997643333333333333333333333 67899999964211 1134455
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++++|+|++++.+..... .+..+. ..++|+++|+||+|+.+. +.+..+..+++.+..+ .
T Consensus 73 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~ 141 (169)
T 3q85_A 73 LQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS------C 141 (169)
T ss_dssp HHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------C
T ss_pred hcc---CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhc--ccCCHHHHHHHHHHcC------C
Confidence 566 89999999999866554431 111111 137999999999999754 3344455555544432 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+++++||+++.|++++++++.+.+...
T Consensus 142 ~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 142 KHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred cEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999877654
No 43
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.92 E-value=2.5e-24 Score=156.21 Aligned_cols=155 Identities=18% Similarity=0.222 Sum_probs=111.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+++|++..+.....++.+.+........+. .+.++||||.. .+......+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~ 75 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE----------RYHSLAPMY 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH----------HhhhhhHHh
Confidence 57999999999999999999998766666667777666554444433 68999999942 234455666
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
++. +|++|+|+|++++.+..... .+..+. ..+.|+++|+||+|+.+. +....++..++.... ..+
T Consensus 76 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~------~~~ 144 (170)
T 1r2q_A 76 YRG---AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK--RAVDFQEAQSYADDN------SLL 144 (170)
T ss_dssp HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHT------TCE
T ss_pred ccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc--cccCHHHHHHHHHHc------CCe
Confidence 766 89999999999875543321 111121 257899999999999754 223334444444332 258
Q ss_pred eEEeecCCCCChHHHHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998754
No 44
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=6.3e-24 Score=155.78 Aligned_cols=160 Identities=19% Similarity=0.197 Sum_probs=108.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
...++|+++|.+|+|||||+++|++..+.. ...++.+.+........++ .+.+|||||.. .+..+.
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~ 77 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE----------RFRSVT 77 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence 346899999999999999999999975432 3344444444433333443 68999999943 234455
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
..+++. +|++|+|+|++++.+..... .+..+. ..+.|+++|+||+|+... +.+..+..+++.+..+
T Consensus 78 ~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~----- 147 (180)
T 2g6b_A 78 HAYYRD---AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG----- 147 (180)
T ss_dssp -CCGGG---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-----
T ss_pred HHHccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc--cccCHHHHHHHHHHcC-----
Confidence 666666 89999999999876544321 112222 267999999999999764 2333445555555443
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++++++||+++.|++++++++.+.+...
T Consensus 148 -~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 148 -LPFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp -CCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred -CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999998876543
No 45
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.92 E-value=6.1e-25 Score=166.20 Aligned_cols=163 Identities=13% Similarity=0.055 Sum_probs=114.3
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
+....+||+++|.+|+|||||+++|++..+...+.++.+.+........+ ..+.+|||||.. .|..+.
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~ 92 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP----------YYDNVR 92 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG----------GGTTTG
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH----------hHHHHH
Confidence 34567899999999999999999999986665556666554432222112 268899999942 233455
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCccc-H-HHHHHhcc--CCCcEEEEEEccccccc----------ccCCCchHhHHHH
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKID-L-DCANWLGR--NNIPLTFVFTKCDKMKV----------AKGRRPDENIKSF 178 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~-~~~~~~~~--~~~p~iiv~nK~D~~~~----------~~~~~~~~~~~~~ 178 (219)
..+++. +|++|+|+|++++.+... . .....+.. .+.|+++|+||+|+... ..+.+..++...+
T Consensus 93 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (214)
T 3q3j_B 93 PLCYSD---SDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI 169 (214)
T ss_dssp GGGCTT---CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHcCC---CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH
Confidence 666666 899999999998766544 1 12222222 48999999999999753 1244555666666
Q ss_pred HHHHHhcCCCCC-CeEEeecCCCCC-hHHHHHHHHHHHhh
Q 027757 179 QQLIRENYPHHP-PWIMTSSVTGLG-RDELLLHMSQLRNY 216 (219)
Q Consensus 179 ~~~~~~~~~~~~-~~~~~Sa~~~~~-v~el~~~l~~~~~~ 216 (219)
.+.++ + +++++||+++.| ++++|+++.+.+..
T Consensus 170 ~~~~~------~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 170 AKQLG------AEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp HHHHT------CSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHcC------CCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 66654 4 899999999998 99999999887654
No 46
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=2.9e-24 Score=156.17 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=108.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+|+|++..+.....++.+.+... ....+. .+.++||||.. .+..+...+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSH----------QFPAMQRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCS----------SCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEECCEEEEEEEEECCCch----------hhHHHHHHh
Confidence 5799999999999999999999875544444444433322 222222 58999999953 234566777
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH-HHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL-DCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+.. +|++++|+|++++.+.... .....+.. .+.|+++|+||+|+.+.. ++.....+.+.....
T Consensus 72 ~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~--~v~~~~~~~~~~~~~------ 140 (172)
T 2erx_A 72 ISK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR--EVQSSEAEALARTWK------ 140 (172)
T ss_dssp HHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC--CSCHHHHHHHHHHHT------
T ss_pred ccc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc--ccCHHHHHHHHHHhC------
Confidence 777 8999999999986554332 22222222 478999999999997653 233344444444332
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|+++++++|.+.++.
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 141 CAFMETSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 589999999999999999999987654
No 47
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.92 E-value=1.5e-24 Score=159.24 Aligned_cols=162 Identities=16% Similarity=0.202 Sum_probs=105.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
...++|+++|++|+|||||+++|++..+.....++.+.+.....+..+ ..+.+|||||.. .+....
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~ 75 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE----------RFQSLG 75 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh----------Hhhhhh
Confidence 446899999999999999999999976555555555544444444333 268999999942 234455
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE 184 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 184 (219)
..+++. +|++|+|+|++++.+..... ....+. ..++|+++|+||+|+.... +.+..++..++.+..
T Consensus 76 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~v~~~~~~~~~~~~-- 149 (182)
T 1ky3_A 76 VAFYRG---ADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK-KIVSEKSAQELAKSL-- 149 (182)
T ss_dssp -CCSTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-CCSCHHHHHHHHHHT--
T ss_pred HHHhhc---CCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc-ccCCHHHHHHHHHhc--
Confidence 556655 89999999999876544421 111111 1678999999999996442 233344444444321
Q ss_pred cCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 185 NYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 185 ~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
...+++++||+++.|+++++++|.+.+...
T Consensus 150 ---~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 150 ---GDIPLFLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp ---TSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred ---CCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 236899999999999999999998876543
No 48
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.92 E-value=1.3e-24 Score=157.95 Aligned_cols=155 Identities=21% Similarity=0.244 Sum_probs=107.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|++|+|||||+++|++..+.....++.+.+........++ .+.+|||||.. .+..+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 74 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE----------RFHALGPI 74 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH----------hhhhhHHH
Confidence 357999999999999999999998765555555655554444444433 68899999943 22334444
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
+++. +|++++|+|++++.+.... ..|+. ..+.|+++|+||+|+.+. +.+..++.+++.+..+
T Consensus 75 ~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~----- 142 (170)
T 1z08_A 75 YYRD---SNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLEKE--RHVSIQEAESYAESVG----- 142 (170)
T ss_dssp SSTT---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHHGGGSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-----
T ss_pred Hhcc---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCeEEEEEECcccccc--cccCHHHHHHHHHHcC-----
Confidence 5555 8999999999986554332 22222 257899999999999764 2333444555444322
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+++++||+++.|+++++++|.+.+.
T Consensus 143 -~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 143 -AKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp -CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -CeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 58999999999999999999988664
No 49
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.92 E-value=2e-24 Score=158.57 Aligned_cols=159 Identities=17% Similarity=0.239 Sum_probs=112.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....++.+.+........+. .+.+|||||.. .+.....
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 79 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLAP 79 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG----------GGGGGTH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh----------hhhhhhH
Confidence 3457999999999999999999999865555555556555444444433 68999999942 2344556
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+.... ..+..+. ..+.|+++|+||+|+.+. .++..++..++.+...
T Consensus 80 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~------ 148 (181)
T 2efe_B 80 MYYRG---AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA--RKVTAEDAQTYAQENG------ 148 (181)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT------
T ss_pred HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc--ccCCHHHHHHHHHHcC------
Confidence 66666 8999999999986654332 1122222 247899999999999754 2333444444444322
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|+++++++|.+.+..
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 149 LFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 589999999999999999999886544
No 50
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.92 E-value=2.3e-24 Score=161.87 Aligned_cols=160 Identities=18% Similarity=0.184 Sum_probs=112.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||.... ..+..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~ 75 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTITS 75 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH----------HHHHH
Confidence 3468999999999999999999999866555556666555544444444 6899999995421 12234
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+..+. ..+.|+++|+||+|+... +.+..+....+.+..+
T Consensus 76 ~~~~~---~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------ 144 (206)
T 2bcg_Y 76 SYYRG---SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK------ 144 (206)
T ss_dssp GGGTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT------
T ss_pred HhccC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC------
Confidence 45555 89999999999876554321 111121 357899999999999764 2233344444443322
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.+++++||++|.|+++++++|.+.+...
T Consensus 145 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 145 MPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999998876543
No 51
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.92 E-value=1.7e-24 Score=156.96 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=111.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|++|+|||||+++|++..+.....++.+.+........++ .+.++||||... +..+...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE----------FDAITKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG----------TTCCCHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh----------HHHHHHH
Confidence 467999999999999999999999765555555555554444444433 689999999431 2233455
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+++. +|++++|+|++++.+..... ....+.. .+.|+++|+||+|+... +....++.+++.+..+ .+
T Consensus 74 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~~ 142 (168)
T 1z2a_A 74 YYRG---AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK------LR 142 (168)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT------CE
T ss_pred HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc--cccCHHHHHHHHHHcC------Ce
Confidence 6665 89999999999865544321 1111211 58999999999999764 2233455555555443 58
Q ss_pred eEEeecCCCCChHHHHHHHHHHHh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++||+++.|+++++++|.+.+.
T Consensus 143 ~~~~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 143 FYRTSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp EEECBTTTTBSSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999987654
No 52
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.92 E-value=4.4e-24 Score=157.74 Aligned_cols=155 Identities=17% Similarity=0.235 Sum_probs=108.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+|+|++..+.....++...... .....++ .+.+|||||... +..+...+
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 72 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE----------YSAMRDQY 72 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEE-EEEEETTEEEEEEEEECCCC-------------CTTHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEE-EEEEECCcEEEEEEEECCCcHH----------HHHHHHHH
Confidence 579999999999999999999987654444444433222 2223333 467899999532 23455667
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++++|+|++++.+..... +.......+.|+++|+||+|+.. .....+..+.+.+.++ .
T Consensus 73 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~------~ 140 (189)
T 4dsu_A 73 MRT---GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS---RTVDTKQAQDLARSYG------I 140 (189)
T ss_dssp HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS---CSSCHHHHHHHHHHHT------C
T ss_pred Hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc---cccCHHHHHHHHHHcC------C
Confidence 777 89999999999865543321 11222235899999999999974 2334455555555543 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+++++||++|.|+++++++|.+.+..
T Consensus 141 ~~~~~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 141 PFIETSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 89999999999999999999887654
No 53
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.92 E-value=3.8e-24 Score=161.90 Aligned_cols=157 Identities=18% Similarity=0.267 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-------------cCeEEEEeCCCCCCCCCCcc
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-------------NKSWYIVDLPGYGFAKAPDV 103 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-------------~~~~~liDtpg~~~~~~~~~ 103 (219)
...++|+|+|.+|+|||||+++|++..+.....++.+.......+.. ...+.+|||||
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G--------- 93 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG--------- 93 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES---------
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCC---------
Confidence 44689999999999999999999987554333333332222222222 23588999998
Q ss_pred hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-------CCCcEEEEEEcccccccccCCCchHhHH
Q 027757 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-------NNIPLTFVFTKCDKMKVAKGRRPDENIK 176 (219)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~ 176 (219)
+..|..++..+++. +|++|+|+|++++.+.... ..|+.. .++|+++|+||+|+... +.+..+..+
T Consensus 94 -~~~~~~~~~~~~~~---~d~iilV~D~~~~~s~~~~--~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~~~~~ 165 (217)
T 2f7s_A 94 -QERFRSLTTAFFRD---AMGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNERQAR 165 (217)
T ss_dssp -HHHHHHHHHHHHTT---CCEEEEEEETTCHHHHHHH--HHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCHHHHH
T ss_pred -cHhHHhHHHHHhcC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCcCCCCEEEEEECCccccc--cccCHHHHH
Confidence 44567778888877 8999999999986654332 334432 57899999999999764 233344455
Q ss_pred HHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 177 SFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++.+... ++++++||+++.|+++++++|.+.+..
T Consensus 166 ~~~~~~~------~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 166 ELADKYG------IPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp HHHHHTT------CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHHCC------CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5544332 589999999999999999999886543
No 54
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.92 E-value=9.6e-24 Score=157.29 Aligned_cols=159 Identities=20% Similarity=0.167 Sum_probs=113.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
....++|+++|.+|+|||||+++|++..+...+.++.+..... ....+ ..+.+|||||... ..+.
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~-----------~~~~ 92 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQED-----------TIQR 92 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCC-----------CHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEE-EEEECCEEEEEEEEECCCCCc-----------ccch
Confidence 3457899999999999999999999986655555555544322 22233 3588999999642 2345
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
..+++. +|++++|+|++++.+..... ....+ ...++|+++|+||+|+... +.+..++..++.+.+.
T Consensus 93 ~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~---- 163 (196)
T 2atv_A 93 EGHMRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS--RQVSTEEGEKLATELA---- 163 (196)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT----
T ss_pred hhhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc--cccCHHHHHHHHHHhC----
Confidence 666776 89999999999866554421 11222 2368999999999999764 3344455555555443
Q ss_pred CCCCeEEeecCCCC-ChHHHHHHHHHHHhhh
Q 027757 188 HHPPWIMTSSVTGL-GRDELLLHMSQLRNYW 217 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~-~v~el~~~l~~~~~~~ 217 (219)
++++++||+++. |+++++++|.+.+.+.
T Consensus 164 --~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~ 192 (196)
T 2atv_A 164 --CAFYECSACTGEGNITEIFYELCREVRRR 192 (196)
T ss_dssp --SEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred --CeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence 689999999999 9999999998876543
No 55
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.92 E-value=3.1e-24 Score=157.09 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=110.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|++|+|||||+++|++..+.....++.+.+........++ .+.++||||.. .+......
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~ 82 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLIPS 82 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGSHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH----------HHHHHHHH
Confidence 358999999999999999999998765555555555444444444444 68999999942 22334456
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++.. +|++|+|+|++++.+..... .+..+. ..++|+++|+||+|+.+. +.+..++...+..... +
T Consensus 83 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~ 151 (179)
T 2y8e_A 83 YIRD---STVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK--RQVSTEEGERKAKELN------V 151 (179)
T ss_dssp HHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG--CCSCHHHHHHHHHHHT------C
T ss_pred HhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc--CcCCHHHHHHHHHHcC------C
Confidence 6666 89999999999865543321 111111 257999999999999764 2333444444444432 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+++++||+++.|+++++++|.+.+..
T Consensus 152 ~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 152 MFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp EEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 89999999999999999999886543
No 56
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.92 E-value=3.1e-24 Score=158.17 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=109.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...++|+++|++|+|||||+++|++. ....+.++.+.+.... ...+..+.+|||||. +.+...+..++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~~-~~~~~~l~i~Dt~G~----------~~~~~~~~~~~ 81 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSV-QSQGFKLNVWDIGGQ----------RKIRPYWRSYF 81 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEEE-EETTEEEEEEECSSC----------GGGHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEEE-EECCEEEEEEECCCC----------HHHHHHHHHHh
Confidence 44689999999999999999999997 4455556666433211 112447899999984 33466777888
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH--HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 189 (219)
+. +|++++|+|++++.+..... +...+. ..+.|+++|+||+|+.... ..++..+.+... ....
T Consensus 82 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~~~~~~~~~~~~~~~ 151 (181)
T 1fzq_A 82 EN---TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-------PASEIAEGLNLHTIRDRV 151 (181)
T ss_dssp TT---CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSSC
T ss_pred CC---CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC-------CHHHHHHHhCchhccCCc
Confidence 77 89999999999876654321 112222 2579999999999997542 122333332211 1223
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.+++++||++|.|++++++++.+.+...
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 152 WQIQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred eEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 5799999999999999999998876544
No 57
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.92 E-value=1.6e-23 Score=154.98 Aligned_cols=170 Identities=25% Similarity=0.339 Sum_probs=120.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCC-CCCCCcchhhhHHHHHHHHhhc
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYG-FAKAPDVTRMDWSSFTKGYFLN 118 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~-~~~~~~~~~~~~~~~~~~~~~~ 118 (219)
++|+++|++|+|||||+++|++..+. ....++++.....+..+ .+.++||||+. ...|+..+++.+..+...+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR--RGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS--SSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc--cCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999997533 33344555444444443 78999999964 3556777788899999888887
Q ss_pred -cCCccEEEEEEeCCCCCC-----------cccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757 119 -RESLVGVLLLIDASVPPQ-----------KIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186 (219)
Q Consensus 119 -~~~~d~vi~v~d~~~~~~-----------~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
...++++++|.|...... ..+......+...++|+++|+||+|+.... .+..+++.+.++..+
T Consensus 79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~ 153 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-----QEVINFLAEKFEVPL 153 (190)
T ss_dssp HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-----HHHHHHHHHHHTCCG
T ss_pred hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-----HHHHHHHHHHhhhhh
Confidence 677888888888764211 111223444555789999999999997642 234555555544200
Q ss_pred C-CCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 187 P-HHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 187 ~-~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
. ...+++++||++|.|++++++++.+.+...
T Consensus 154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 0 012479999999999999999999876543
No 58
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.92 E-value=4.8e-24 Score=158.41 Aligned_cols=159 Identities=18% Similarity=0.178 Sum_probs=112.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+|+|++|+|||||+++|++..+.....++.+.+........+ ..+.+|||||... +..+..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~ 92 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER----------YRAITS 92 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT----------TCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhhH
Confidence 446899999999999999999999986555555666655544444433 3688999999642 123445
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+..+. ..+.|+++|+||+|+.... .+..+....+.... .
T Consensus 93 ~~~~~---~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~------~ 161 (193)
T 2oil_A 93 AYYRG---AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR--EVPTEEARMFAENN------G 161 (193)
T ss_dssp HHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGC--CSCHHHHHHHHHHT------T
T ss_pred HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccc--ccCHHHHHHHHHHc------C
Confidence 66666 89999999999866543321 122222 2578999999999997642 23334444444332 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|+++++++|.+.+..
T Consensus 162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 162 LLFLETSALDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999876543
No 59
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=5.8e-24 Score=160.22 Aligned_cols=158 Identities=18% Similarity=0.242 Sum_probs=111.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .+.....
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 87 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE----------RFRTITT 87 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGG----------GGTCCCH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHH
Confidence 4578999999999999999999998765555556666555544444444 68999999943 2223345
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.++.. +|++|+|+|++++.+..... .+..+. ..+.|+++|+||+|+.. +....+..+++.+.++
T Consensus 88 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~------ 155 (213)
T 3cph_A 88 AYYRG---AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET---RVVTADQGEALAKELG------ 155 (213)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS---CCSCHHHHHHHHHHHT------
T ss_pred HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc---cccCHHHHHHHHHHcC------
Confidence 56666 89999999999865543321 112222 24789999999999942 3334445555555443
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|+++++++|.+.+..
T Consensus 156 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 156 IPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp CCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999886654
No 60
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.92 E-value=9.8e-25 Score=159.85 Aligned_cols=164 Identities=17% Similarity=0.170 Sum_probs=110.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
...++|+++|++|+|||||+++|++..+.....+..+.+........ +..+.+|||||...... +...+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~ 75 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT----------MRARG 75 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC----------SCCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH----------HHHHH
Confidence 45789999999999999999999997544333222222222222223 34688999999643211 11122
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh---cCCCCCCe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE---NYPHHPPW 192 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 192 (219)
...+|++|+|+|++++......+.+..+...++|+++|+||+|+.... .+......+.... .++..+++
T Consensus 76 ---~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2lkc_A 76 ---AQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-----PDRVMQELMEYNLVPEEWGGDTIF 147 (178)
T ss_dssp ---CCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-----HHHHHHHHTTTTCCBTTTTSSEEE
T ss_pred ---HhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-----HHHHHHHHHhcCcChhHcCCcccE
Confidence 334899999999998776666667777777789999999999997531 1122222211111 11112579
Q ss_pred EEeecCCCCChHHHHHHHHHHHhhhc
Q 027757 193 IMTSSVTGLGRDELLLHMSQLRNYWD 218 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~~~~~~ 218 (219)
+++||+++.|+++++++|.+.+...+
T Consensus 148 ~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 148 CKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp EECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 99999999999999999998876643
No 61
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=1.9e-24 Score=155.70 Aligned_cols=156 Identities=26% Similarity=0.281 Sum_probs=104.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
++|+++|++|+|||||+++|++.. .....+.++++..... ... +..+.++||||...... ....+......++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR-SAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRAL 77 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC-C-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-eeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHHH
Confidence 589999999999999999999874 3334444554443322 222 34789999999753221 1222334445555
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
+. +|++++|+|++++.+..+..+..++...+.|+++|+||+|+.... +..+++. . ++ ..+++++|
T Consensus 78 ~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------~~~~~~~-~----~~-~~~~~~~S 142 (161)
T 2dyk_A 78 ED---AEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE------LYLGPLY-G----LG-FGDPIPTS 142 (161)
T ss_dssp TT---CSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG------GGCGGGG-G----GS-SCSCEECB
T ss_pred Hh---CCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch------HhHHHHH-h----CC-CCCeEEEe
Confidence 55 899999999999877766667777777889999999999997642 1222222 1 11 13799999
Q ss_pred cCCCCChHHHHHHHHHHH
Q 027757 197 SVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 197 a~~~~~v~el~~~l~~~~ 214 (219)
|+++.|++++++++.+.+
T Consensus 143 a~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 143 SEHARGLEELLEAIWERL 160 (161)
T ss_dssp TTTTBSHHHHHHHHHHHC
T ss_pred cccCCChHHHHHHHHHhC
Confidence 999999999999998753
No 62
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.91 E-value=4.1e-24 Score=161.60 Aligned_cols=162 Identities=12% Similarity=0.100 Sum_probs=97.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
....++|+++|.+|+|||||+++|++..+...+.++.+.... .....++ .+.+|||||.. .|..+.
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~ 99 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM-VNLQVKGKPVHLHIWDTAGQD----------DYDRLR 99 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE-EEEEETTEEEEEEEEEC--------------------
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCch----------hhhHHH
Confidence 345689999999999999999999987654444454443332 2223333 68899999942 334556
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHH
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSF 178 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~ 178 (219)
..++.. +|++|+|+|++++.+..... ....+.. .++|+++|+||+|+..... +.+..++..++
T Consensus 100 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 176 (214)
T 2j1l_A 100 PLFYPD---ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM 176 (214)
T ss_dssp -----C---EEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred HHHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence 666766 89999999999866554321 1222222 4789999999999976421 12233333444
Q ss_pred HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+.++ ..+++++||++|.|+++++++|.+.+..
T Consensus 177 ~~~~~-----~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 177 ARSVG-----AVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHTT-----CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHhcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 33322 1389999999999999999999887654
No 63
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=6.7e-25 Score=164.27 Aligned_cols=164 Identities=15% Similarity=0.102 Sum_probs=109.7
Q ss_pred CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhH
Q 027757 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDW 108 (219)
Q Consensus 32 ~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~ 108 (219)
+.++....++|+++|.+|+|||||+++|++..+...+.++.+... ...... ...+.+|||||.....
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~--------- 86 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYS--------- 86 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTC---------
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchH---------
Confidence 345556678999999999999999999999865554555444333 222222 2367899999954221
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
.+...+++. +|++|+|+|++++.+..... ....+. ..++|+++|+||+|+... ..+.......+.+.++
T Consensus 87 -~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~ 160 (201)
T 3oes_A 87 -ILPYSFIIG---VHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE--REVQAVEGKKLAESWG 160 (201)
T ss_dssp -CCCGGGTTT---CCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT
T ss_pred -HHHHHHHhc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccc--cccCHHHHHHHHHHhC
Confidence 122445555 89999999999866554321 112222 247899999999999764 3344455555555544
Q ss_pred hcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.+++++||+++.|+++++++|.+.+...
T Consensus 161 ------~~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 161 ------ATFMESSARENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp ------CEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred ------CeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 5899999999999999999998876543
No 64
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.91 E-value=3.9e-24 Score=158.43 Aligned_cols=161 Identities=15% Similarity=0.085 Sum_probs=110.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...++|+++|.+|+|||||+++|++..+.....++.+.+... ....+..+.+|||||. ..+..++..++
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~ 88 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITKGNVTIKLWDIGGQ----------PRFRSMWERYC 88 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEETTEEEEEEEECCS----------HHHHTTHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEeCCEEEEEEECCCC----------HhHHHHHHHHH
Confidence 346899999999999999999999876555555655544332 1122347899999994 23455667777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH--HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 189 (219)
+. +|++|+|+|++++.+..... +...+. ..++|+++|+||+|+.... ..+++.+.+... ....
T Consensus 89 ~~---~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~~~~~~~~~~~~~~~ 158 (188)
T 1zd9_A 89 RG---VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-------DEKELIEKMNLSAIQDRE 158 (188)
T ss_dssp TT---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSSC
T ss_pred cc---CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-------CHHHHHHHhChhhhccCC
Confidence 66 89999999999876554321 112222 2689999999999997531 122333332221 1223
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNYWD 218 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~~ 218 (219)
.+++++||+++.|+++++++|.+.+...+
T Consensus 159 ~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 187 (188)
T 1zd9_A 159 ICCYSISCKEKDNIDITLQWLIQHSKSRR 187 (188)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHTCC---
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 57899999999999999999998776554
No 65
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.91 E-value=2.1e-24 Score=160.07 Aligned_cols=160 Identities=20% Similarity=0.258 Sum_probs=105.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
...++|+++|.+|+|||||+++|++.. +...+.++.+.. ...... +..+.+|||||... +..++..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 86 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSSLSFTVFDMSGQGR----------YRNLWEH 86 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSSCEEEEEEECCSTT----------TGGGGGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECCEEEEEEECCCCHH----------HHHHHHH
Confidence 456899999999999999999999975 244444444422 222222 45899999999532 2233455
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHH-hcC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR-ENY 186 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~ 186 (219)
+++. +|++|+|+|++++.+.... .+...+.. .+.|+++|+||+|+.... ..++..+.+. ..+
T Consensus 87 ~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~~ 156 (190)
T 2h57_A 87 YYKE---GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV-------TSVKVSQLLCLENI 156 (190)
T ss_dssp GGGG---CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC-------CHHHHHHHHTGGGC
T ss_pred HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC-------CHHHHHHHhChhhc
Confidence 6666 8999999999986544332 11122222 479999999999997531 1223333332 111
Q ss_pred -CCCCCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757 187 -PHHPPWIMTSSVTGLGRDELLLHMSQLRNYWD 218 (219)
Q Consensus 187 -~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~~ 218 (219)
....+++++||+++.|+++++++|.+.+++++
T Consensus 157 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~k 189 (190)
T 2h57_A 157 KDKPWHICASDAIKGEGLQEGVDWLQDQIQTVK 189 (190)
T ss_dssp CSSCEEEEECBTTTTBTHHHHHHHHHHHC----
T ss_pred cCCceEEEEccCCCCcCHHHHHHHHHHHHHHhc
Confidence 23468999999999999999999999887765
No 66
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.4e-24 Score=161.42 Aligned_cols=159 Identities=13% Similarity=0.024 Sum_probs=109.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+...+.++.+..... ....+ ..+.+|||||.... ..+..
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~----------~~~~~ 84 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQEDY----------DRLRP 84 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEE-EEESSSCEEEEEEECCCCSSSS----------TTTGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEE-EEEECCEEEEEEEEECCCCcch----------hHHHH
Confidence 456899999999999999999999876555445554433322 22223 26789999996422 22334
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEcccccccc----------cCCCchHhHHHHH
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVA----------KGRRPDENIKSFQ 179 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~ 179 (219)
.+++. +|++|+|+|++++.+..... .+..+.. .++|+++|+||+|+.+.. .+.+..++..++.
T Consensus 85 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 161 (194)
T 2atx_A 85 LSYPM---TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA 161 (194)
T ss_dssp GGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred HhcCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH
Confidence 55555 89999999999876554331 2233332 389999999999997642 1234445555555
Q ss_pred HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+.++. .+++++||++|.|+++++++|.+.+
T Consensus 162 ~~~~~-----~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 162 KEIGA-----CCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHTC-----SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHcCC-----cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 55431 3899999999999999999998765
No 67
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=9.2e-24 Score=156.85 Aligned_cols=156 Identities=22% Similarity=0.194 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+++|++..+.....++.+.+.....+..+. .+.+|||||.. .+..+...+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 84 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE----------RFRTLTPSY 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSG----------GGCCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCch----------hhhhhhHHH
Confidence 57999999999999999999999866666677777666555554443 68999999953 223344566
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
++. +|++|+|+|++++.+..... .+..+.. .++|+++|+||+|+.. +.+..+...++.+... +
T Consensus 85 ~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~------~ 152 (195)
T 1x3s_A 85 YRG---AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS------M 152 (195)
T ss_dssp HTT---CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT------C
T ss_pred hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc---cccCHHHHHHHHHHcC------C
Confidence 666 89999999999876554432 1222222 4789999999999953 2233344444444322 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+++++||+++.|+++++++|.+.+..
T Consensus 153 ~~~~~Sa~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 153 LFIEASAKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 79999999999999999999887653
No 68
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=157.15 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=106.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
....++|+++|++|+|||||+++|++........+..+.+.....+..++ .+.+|||+|.... ...+.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---------~~~~~ 90 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---------GGWLR 90 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG---------GHHHH
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc---------hhhhH
Confidence 34568999999999999999999986532222222222222222233333 5778999995311 12356
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
..+++. +|++|+|+|++++.+..... .+..+. ..++|+++|+||+|+... +.+..++.+++.+.+.
T Consensus 91 ~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~a~~~~---- 161 (195)
T 3cbq_A 91 DHCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS---- 161 (195)
T ss_dssp HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT----
T ss_pred HHhhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc--CCcCHHHHHHHHHHhC----
Confidence 677777 89999999999876554431 111121 147999999999999754 2333444444444322
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|++++|+++.+.+..
T Consensus 162 --~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 162 --CKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp --CEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred --CEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999887654
No 69
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.91 E-value=1.2e-23 Score=152.88 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=107.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
..++|+++|++|+|||||+++|++..+ ....++.+.+. ..... +..+.+|||||.. .+..++..++
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~~ 72 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNV--ETVTYKNLKFQVWDLGGLT----------SIRPYWRCYY 72 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC-CCCCCCSSEEE--EEEEETTEEEEEEEECCCG----------GGGGGGGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC-CCcCCcCccce--EEEEECCEEEEEEECCCCh----------hhhHHHHHHh
Confidence 368999999999999999999998743 33444444332 22222 4478999999953 1233445555
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH--HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 189 (219)
+. +|++++|+|++++.+..... +...+.. .+.|+++|+||+|+.+.. ..+++.+.+... ....
T Consensus 73 ~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~ 142 (171)
T 1upt_A 73 SN---TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM-------TSSEMANSLGLPALKDRK 142 (171)
T ss_dssp TT---CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHHTGGGCTTSC
T ss_pred cc---CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC-------CHHHHHHHhCchhccCCc
Confidence 55 89999999999987654421 2222222 589999999999997642 123333333221 1223
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+++++||+++.|+++++++|.+.+..
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 143 WQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred eEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 579999999999999999999987754
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.91 E-value=2.1e-23 Score=154.52 Aligned_cols=157 Identities=17% Similarity=0.269 Sum_probs=104.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|.+|+|||||+++|++..+.....++.+.... .....++ .+.+|||||.. .+..+...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 88 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE----------EYSAMRDQ 88 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC--------------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence 3579999999999999999999987554444444433322 2233333 48899999943 23445566
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
+++. +|++++|+|++++.+..+.. ....+. ..++|+++|+||+|+.. +....++.+++.+.++
T Consensus 89 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~------ 156 (190)
T 3con_A 89 YMRT---GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT---RTVDTKQAHELAKSYG------ 156 (190)
T ss_dssp -CTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT------
T ss_pred hhCc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc---ccCCHHHHHHHHHHcC------
Confidence 6666 89999999999866544321 111111 24799999999999875 2234455556655543
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++++++||+++.|+++++++|.+.+...
T Consensus 157 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 157 IPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999998877654
No 71
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=1.3e-23 Score=156.63 Aligned_cols=157 Identities=17% Similarity=0.205 Sum_probs=110.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+++|++..+...+.++.+.+... ....+. .+.+|||||.. .+..+..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~ 74 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQ-VISCDKSVCTLQITDTTGSH----------QFPAMQR 74 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEE-EEEETTEEEEEEEEECCGGG----------SCHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeE-EEEECCEEEEEEEEeCCChH----------HhHHHHH
Confidence 456899999999999999999999876554455554433322 222222 68899999942 3456677
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
.++.. +|++++|+|++++.+..... ...++.. .+.|+++|+||+|+... .+..+....+.+.++
T Consensus 75 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~---- 144 (199)
T 2gf0_A 75 LSISK---GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR---EVDTREAQAVAQEWK---- 144 (199)
T ss_dssp HHHHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC---SSCHHHHHHHHHHHT----
T ss_pred Hhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc---ccCHHHHHHHHHHhC----
Confidence 77777 89999999999865543322 2222222 47899999999999752 233444455544433
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+++++||++|.|+++++++|.+.+..
T Consensus 145 --~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 145 --CAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred --CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 589999999999999999999887643
No 72
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.91 E-value=5.7e-24 Score=159.13 Aligned_cols=158 Identities=21% Similarity=0.171 Sum_probs=104.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||. ..+..+..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~ 92 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ----------ERFRSVTR 92 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTH----------HHHSCCCH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCc----------HhHHHHHH
Confidence 3468999999999999999999998765555555555444444444443 7899999993 22333445
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+..+ ...+.|+++|+||+|+... +.+...+...+.+.. .
T Consensus 93 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~------~ 161 (200)
T 2o52_A 93 SYYRG---AAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE--REVTFLEASRFAQEN------E 161 (200)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHT------T
T ss_pred HHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc--cccCHHHHHHHHHHc------C
Confidence 66666 89999999999876554432 11112 2257999999999999754 223334444444332 2
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++++||++|.|+++++++|.+.+.
T Consensus 162 ~~~~~~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 162 LMFLETSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999987654
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.91 E-value=2.5e-23 Score=150.10 Aligned_cols=154 Identities=16% Similarity=0.230 Sum_probs=107.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+++|++..+.....++.+.... .....++ .+.++||||... +..+...+
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~ 71 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE----------YSAMRDQY 71 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCSS----------CCHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEE-EEEEECCEEEEEEEEECCCchh----------hhHHHHHh
Confidence 468999999999999999999987544444444443322 2223332 478999999532 23455667
Q ss_pred hhccCCccEEEEEEeCCCCCCcccH-HHHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDL-DCANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
+.. +|++++|+|++++.+.... .....+. ..+.|+++|+||+|+.+. ....+..+++.+..+ .
T Consensus 72 ~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~------~ 139 (166)
T 2ce2_X 72 MRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR---TVESRQAQDLARSYG------I 139 (166)
T ss_dssp HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC---CSCHHHHHHHHHHHT------C
T ss_pred hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc---ccCHHHHHHHHHHcC------C
Confidence 776 8999999999976554332 1111111 247999999999998762 233455555555543 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++++||+++.|+++++++|.+.+.
T Consensus 140 ~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 140 PYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999988764
No 74
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=1.2e-23 Score=175.93 Aligned_cols=172 Identities=22% Similarity=0.291 Sum_probs=123.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+|+|++. ......+.++++.+.. .+.. +..+.+|||||+.........++.|..+..
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 45789999999999999999999986 4456677777777542 2222 347999999997644333445666666655
Q ss_pred H-HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC--CCC
Q 027757 114 G-YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHP 190 (219)
Q Consensus 114 ~-~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 190 (219)
. +++. +|++|+|+|++++.+..+..+..++...++|+++|+||+|+.+... . ..++..+.+...+. ...
T Consensus 272 ~~~~~~---ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~--~---~~~~~~~~~~~~~~~~~~~ 343 (456)
T 4dcu_A 272 LKAIDR---SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDE--S---TMKEFEENIRDHFQFLDYA 343 (456)
T ss_dssp HHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCS--S---HHHHHHHHHHHHCGGGTTS
T ss_pred HHHHhh---CCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCch--H---HHHHHHHHHHHhcccCCCC
Confidence 3 5566 8999999999998888888888888888999999999999976421 2 22333333333221 236
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+++++||++|.|++++++++.+.+..+
T Consensus 344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 344 PILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 899999999999999999999877654
No 75
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.91 E-value=1.7e-24 Score=159.35 Aligned_cols=156 Identities=15% Similarity=0.215 Sum_probs=87.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|++|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||.. .|..+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~ 76 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTITTA 76 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh----------hhhhhHHH
Confidence 358999999999999999999998754444444444333333343333 68999999953 22334445
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
+++. +|++|+|+|++++.+.... ..|+. ..+.|+++|+||+|+.+. +.+..++.+++.+..+
T Consensus 77 ~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~----- 144 (183)
T 2fu5_C 77 YYRG---AMGIMLVYDITNEKSFDNI--RNWIRNIEEHASADVEKMILGNKCDVNDK--RQVSKERGEKLALDYG----- 144 (183)
T ss_dssp TTTT---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHSCTTCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-----
T ss_pred HHhc---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCCEEEEEECccCCcc--CcCCHHHHHHHHHHcC-----
Confidence 5555 8999999999986654332 22332 257899999999999754 2334455555555443
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|+++++++|.+.+..
T Consensus 145 -~~~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 145 -IKFMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp -CEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred -CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999876643
No 76
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.91 E-value=4.2e-24 Score=159.75 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=105.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
....++|+++|.+|+|||||+++|++..+...+.++.+.... .....++ .+.+|||||.... ..++
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~ 85 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDEF----------DKLR 85 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE-EEEEETTEEEEEEEEECCCSTTC----------SSSG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCHHH----------HHHh
Confidence 355789999999999999999999987655555555443332 2233333 5779999996422 1223
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEcccccccc----------cCCCchHhHHHH
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVA----------KGRRPDENIKSF 178 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~ 178 (219)
..++.. +|++|+|+|++++.+..... ....+.. .++|+++|+||+|+.... .+.+..++...+
T Consensus 86 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 162 (201)
T 2q3h_A 86 PLCYTN---TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLL 162 (201)
T ss_dssp GGGGTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred HhhcCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHH
Confidence 445555 89999999999876654431 2222222 489999999999997632 233444555555
Q ss_pred HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+.++. .+++++||+++.|+++++++|.+.+..
T Consensus 163 ~~~~~~-----~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 163 AEEIKA-----ASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHTC-----SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHhcCC-----cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 554431 379999999999999999999886543
No 77
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.1e-24 Score=163.20 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=105.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+|+|++|+|||||+++|++..+.....++.+.+.....+..++ .+.+|||||.... ..++.
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 80 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY----------RAITS 80 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCG
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccch----------hhhHH
Confidence 3468999999999999999999999865555556655555544444444 6899999995421 22334
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+..+. ..++|+++|+||+|+... +++..++..++.+...
T Consensus 81 ~~~~~---~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~------ 149 (223)
T 3cpj_B 81 AYYRG---AVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL--RAVPTEESKTFAQENQ------ 149 (223)
T ss_dssp GGTTT---CCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGG--CCSCHHHHHHHHHHTT------
T ss_pred HHhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc--cccCHHHHHHHHHHcC------
Confidence 55555 89999999999876654321 111222 247899999999999764 2333444444443322
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|+++++++|.+.+..
T Consensus 150 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 150 LLFTETSALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp CEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999887654
No 78
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=1.6e-23 Score=165.94 Aligned_cols=160 Identities=24% Similarity=0.209 Sum_probs=113.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
..+|+|+|.+|+|||||+|+|++.. ....++.+++|++.. .... +.++.++||||+.... ......+......+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~-~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~--~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM--DALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC-CSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC--SHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc-eeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh--hHHHHHHHHHHHHH
Confidence 3579999999999999999999974 555566666665432 1222 3479999999976432 12222344445556
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccC--CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeE
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN--NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI 193 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (219)
++. +|++++|+|++++.+..+..+...+... +.|+++|+||+|+.... ..+.+..+.+ ....+++
T Consensus 84 l~~---ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~------~~~~~~~~~~----~~~~~~~ 150 (301)
T 1wf3_A 84 LAD---VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP------EEAMKAYHEL----LPEAEPR 150 (301)
T ss_dssp TSS---CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH------HHHHHHHHHT----STTSEEE
T ss_pred Hhc---CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCch------HHHHHHHHHh----cCcCcEE
Confidence 655 9999999999988776665556666665 89999999999997542 1123333332 2224689
Q ss_pred EeecCCCCChHHHHHHHHHHH
Q 027757 194 MTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 194 ~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++||++|.|+++++++|.+.+
T Consensus 151 ~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 151 MLSALDERQVAELKADLLALM 171 (301)
T ss_dssp ECCTTCHHHHHHHHHHHHTTC
T ss_pred EEeCCCCCCHHHHHHHHHHhc
Confidence 999999999999999997643
No 79
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.91 E-value=1.2e-23 Score=155.33 Aligned_cols=158 Identities=17% Similarity=0.124 Sum_probs=108.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...++|+++|++|+|||||+++|++.. ...+.++.+.+.... ...+..+.+|||||.. .+...+..++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~-~~~~~~~~~~Dt~G~~----------~~~~~~~~~~ 83 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTL-EHRGFKLNIWDVGGQK----------SLRSYWRNYF 83 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEE-EETTEEEEEEEECCSH----------HHHTTGGGGC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEE-EECCEEEEEEECCCCH----------hHHHHHHHHh
Confidence 457899999999999999999999975 555555555333211 1124478999999952 2344445555
Q ss_pred hccCCccEEEEEEeCCCCCCcccH-HHH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDL-DCA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 189 (219)
+. +|++++|+|++++.+.... ..+ ..+. ..+.|+++|+||+|+.... ..++..+.+... ....
T Consensus 84 ~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~ 153 (186)
T 1ksh_A 84 ES---TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL-------SCNAIQEALELDSIRSHH 153 (186)
T ss_dssp TT---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSSC
T ss_pred cC---CCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC-------CHHHHHHHhChhhccCCc
Confidence 55 8999999999987665432 111 2222 2579999999999997642 123333332211 1234
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|++++++++.+.+.+
T Consensus 154 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 154 WRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred eEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999887654
No 80
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.91 E-value=1.1e-24 Score=164.89 Aligned_cols=160 Identities=15% Similarity=0.181 Sum_probs=110.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
...+||+++|.+|+|||||+|+|++..+.....++.+.+......... ..+.+|||||.... ..+.
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~ 78 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK----------AVLK 78 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT----------SCCC
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh----------chHH
Confidence 446899999999999999999999876666667777766554444332 25899999995321 2233
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHH----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLD----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
..++.. +|++|+|+|++++.+..+.. .+......+.|+++|+||+|+.... .+..+....+ ... .
T Consensus 79 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~----~~~--~ 147 (218)
T 4djt_A 79 DVYYIG---ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQ--KISKKLVMEV----LKG--K 147 (218)
T ss_dssp HHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC------CCHHHHHHH----TTT--C
T ss_pred HHHhhc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc--ccCHHHHHHH----HHH--c
Confidence 455655 89999999999876655431 1222223568999999999987542 2222222222 222 2
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
..+++++||++|.|+++++++|.+.+...
T Consensus 148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 148 NYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp CCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 36899999999999999999999877643
No 81
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.91 E-value=1.3e-23 Score=162.99 Aligned_cols=160 Identities=19% Similarity=0.164 Sum_probs=111.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE--eeEEEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL--INHFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~--~~~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
++|+++|++|+|||||+|+|++.. ....+.+++|.+ ...+..+ ..+.++||||..............+.+...|+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 689999999999999999999974 445555666643 3333333 37899999997533211000022234556666
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
.. ..+|++|+|+|+++.. ....+..++.+.++|+++|+||+|+....... ...+.+.+.++ ++++++|
T Consensus 80 ~~-~~~d~vi~VvDas~~~--~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~---~~~~~l~~~lg------~~vi~~S 147 (256)
T 3iby_A 80 ID-LEYDCIINVIDACHLE--RHLYLTSQLFELGKPVVVALNMMDIAEHRGIS---IDTEKLESLLG------CSVIPIQ 147 (256)
T ss_dssp HH-SCCSEEEEEEEGGGHH--HHHHHHHHHTTSCSCEEEEEECHHHHHHTTCE---ECHHHHHHHHC------SCEEECB
T ss_pred hh-CCCCEEEEEeeCCCch--hHHHHHHHHHHcCCCEEEEEEChhcCCcCCcH---HHHHHHHHHcC------CCEEEEE
Confidence 22 2389999999999843 33556778888899999999999987654322 23444444443 6999999
Q ss_pred cCCCCChHHHHHHHHHH
Q 027757 197 SVTGLGRDELLLHMSQL 213 (219)
Q Consensus 197 a~~~~~v~el~~~l~~~ 213 (219)
|++|.|++++++++.+.
T Consensus 148 A~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 148 AHKNIGIPALQQSLLHC 164 (256)
T ss_dssp GGGTBSHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHhh
Confidence 99999999999999765
No 82
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.91 E-value=3.7e-23 Score=150.11 Aligned_cols=159 Identities=23% Similarity=0.263 Sum_probs=104.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE--eeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL--INHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~--~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+++|++..+. ....++++.. ...+.. +..+.+|||||........ ..+.+...|
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~~~~ 76 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVY--IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDY 76 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSS--CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS----HHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCee--ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc----hhHHHHHHH
Confidence 468999999999999999999986432 2333333332 222222 3478999999965321111 223455666
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
++.. .+|++++|+|+++... .......+.+.+.|+++|+||+|+....... ...+++.+.++ .+++++
T Consensus 77 ~~~~-~~~~~i~v~D~~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~------~~~~~~ 144 (165)
T 2wji_A 77 IINE-KPDLVVNIVDATALER--NLYLTLQLMEMGANLLLALNKMDLAKSLGIE---IDVDKLEKILG------VKVVPL 144 (165)
T ss_dssp HHHH-CCSEEEEEEETTCHHH--HHHHHHHHHHTTCCEEEEEECHHHHHHTTCC---CCHHHHHHHHT------SCEEEC
T ss_pred HhcC-CCCEEEEEecCCchhH--hHHHHHHHHhcCCCEEEEEEchHhccccChh---hHHHHHHHHhC------CCEEEE
Confidence 6521 2799999999986321 1223334445689999999999987543222 12445554443 589999
Q ss_pred ecCCCCChHHHHHHHHHHHh
Q 027757 196 SSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~~~ 215 (219)
||++|.|++++++++.+.++
T Consensus 145 SA~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 145 SAAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp BGGGTBSHHHHHHHHHHHTT
T ss_pred EcCCCCCHHHHHHHHHHHhh
Confidence 99999999999999988654
No 83
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.91 E-value=2.7e-23 Score=150.16 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=104.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN 118 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~ 118 (219)
+||+++|++|+|||||+++|++..+. ...++.+.. ..... .+..+.+|||||.. .+..++..+++.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~~ 67 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNISFTVWDVGGQD----------KIRPLWRHYFQN 67 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS-CCCCCSSCC--EEEEECSSCEEEEEECCCCG----------GGHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC-cccCcCcee--EEEEEECCEEEEEEEcCCCh----------hhHHHHHHHhcc
Confidence 58999999999999999999987433 333433322 11222 24579999999952 346677777777
Q ss_pred cCCccEEEEEEeCCCCCCcccHH-HHH-Hhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCCC
Q 027757 119 RESLVGVLLLIDASVPPQKIDLD-CAN-WLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHPP 191 (219)
Q Consensus 119 ~~~~d~vi~v~d~~~~~~~~~~~-~~~-~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 191 (219)
+|++++|+|++++.+..... .+. .+. ..+.|+++|+||+|+.... ..+++.+.+.... ....+
T Consensus 68 ---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~ 137 (164)
T 1r8s_A 68 ---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-------NAAEITDKLGLHSLRHRNWY 137 (164)
T ss_dssp ---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHTTGGGCSSCCEE
T ss_pred ---CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC-------CHHHHHHHhCcccccCccEE
Confidence 89999999999876554321 111 222 1479999999999996531 1233333332211 12356
Q ss_pred eEEeecCCCCChHHHHHHHHHHHhh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++||+++.|+++++++|.+.+..
T Consensus 138 ~~~~Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 138 IQATCATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEcccCCCcCHHHHHHHHHHHHhh
Confidence 9999999999999999999887654
No 84
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.91 E-value=2e-24 Score=162.13 Aligned_cols=159 Identities=14% Similarity=0.075 Sum_probs=103.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC--eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK--SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
...++|+++|.+|+|||||+++|++..+.....++.+..........+. .+.++||||.. .|..+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~ 97 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE----------DYDRLRPL 97 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG----------GGTTTGGG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCch----------hhHHHHHH
Confidence 4578999999999999999999998755544444443322222222222 45699999963 22334445
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHHHH
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQ 180 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~ 180 (219)
+++. +|++|+|+|++++.+..... ....+.. .++|+++|+||+|+..... +.+..++...+.+
T Consensus 98 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 174 (204)
T 4gzl_A 98 SYPQ---TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 174 (204)
T ss_dssp GCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHH
Confidence 5555 89999999999876655432 2222332 4899999999999876431 1122223333333
Q ss_pred HHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 181 ~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.+. ..+++++||++|.|++++++++.+.
T Consensus 175 ~~~-----~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 175 EIG-----AVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HTT-----CSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred hcC-----CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 222 1469999999999999999999874
No 85
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.91 E-value=8.5e-24 Score=158.62 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=108.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+...+.++.+.+.....+..++ .+.+|||||... +..+..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~ 75 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER----------FQSLGV 75 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG----------GSCSCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH----------HHHhHH
Confidence 3468999999999999999999999865555566666555544444443 689999999532 122223
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 185 (219)
.+++. +|++|+|+|++++.+..... ....+. ..+.|+++|+||+|+.. +.+..+....+...
T Consensus 76 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~---- 145 (207)
T 1vg8_A 76 AFYRG---ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYS---- 145 (207)
T ss_dssp GGGTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHH----
T ss_pred HHHhC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc---cccCHHHHHHHHHh----
Confidence 44555 89999999999876544431 111111 14789999999999973 22333334443332
Q ss_pred CCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
....+++++||++|.|+++++++|.+.+.
T Consensus 146 -~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 146 -KNNIPYFETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp -TTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 12368999999999999999999988654
No 86
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.91 E-value=4.1e-24 Score=157.53 Aligned_cols=158 Identities=14% Similarity=0.069 Sum_probs=106.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+++|++..+.....++.+...... ...++ .+.+|||||.. .|..+...+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~ 73 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE----------DYDRLRPLS 73 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEE-EEETTEEEEEEEECCCCSG----------GGTTTGGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEE-EEECCEEEEEEEEECCCCH----------hHHHHHHHh
Confidence 57999999999999999999998765555555544333222 22222 56799999963 122333455
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHHHHH
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQL 181 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~ 181 (219)
++. +|++++|+|++++.+..... ....+.. .+.|+++|+||+|+.+... +.+..++..++.+.
T Consensus 74 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 150 (186)
T 1mh1_A 74 YPQ---TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 150 (186)
T ss_dssp CTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred ccC---CcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh
Confidence 555 89999999999866554432 2223332 3899999999999875421 22333333333333
Q ss_pred HHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 182 IRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 182 ~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+ ..+++++||++|.|++++++++.+.+.
T Consensus 151 ~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 151 IG-----AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp TT-----CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred cC-----CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 22 138999999999999999999988764
No 87
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.91 E-value=2.3e-24 Score=160.32 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=106.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCC-------CeeEEeeEE-----Ee---cCeEEEEeCCCCCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKP-------GKTQLINHF-----LV---NKSWYIVDLPGYGFAKAP 101 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-------~~t~~~~~~-----~~---~~~~~liDtpg~~~~~~~ 101 (219)
...+||+++|++|+|||||++.+.+. +...+.+.. ..|...... .. ...+.+|||||..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----- 85 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV----- 85 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC-----
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH-----
Confidence 44689999999999999999888875 454433221 112211111 11 1258899999953
Q ss_pred cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH----HHHHHhcc-----CCCcEEEEEEcccccccccCCCch
Q 027757 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL----DCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPD 172 (219)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~ 172 (219)
.|..++..+++. +|++|+|+|++++.+.... .+..|+.. .++|+++|+||+|+... +..
T Consensus 86 -----~~~~~~~~~~~~---~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~----~~~ 153 (198)
T 3t1o_A 86 -----FYNASRKLILRG---VDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA----LPV 153 (198)
T ss_dssp -----SCSHHHHHHTTT---CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC----CCH
T ss_pred -----HHHHHHHHHHhc---CCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc----cCH
Confidence 234567778777 8999999999954333322 33345543 58999999999999753 223
Q ss_pred HhHHHHHHHHHhcCCCCC-CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 173 ENIKSFQQLIRENYPHHP-PWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
++.+++.+. . .. +++++||++|.|+++++++|.+.+...
T Consensus 154 ~~~~~~~~~----~--~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 154 EMVRAVVDP----E--GKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp HHHHHHHCT----T--CCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh----c--CCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 333333322 1 24 899999999999999999998876543
No 88
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.91 E-value=3e-23 Score=153.46 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=106.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...++|+++|.+|+|||||+++|++..+. .+.++.+.+.... ...+..+.+|||||... +..++..++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~ 81 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEI-VINNTRFLMWDIGGQES----------LRSSWNTYY 81 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEE-EETTEEEEEEECCC--------------CGGGHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEE-EECCEEEEEEECCCCHh----------HHHHHHHHh
Confidence 44689999999999999999999976544 5555554332211 12244789999999632 223445666
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-HH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-CA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 189 (219)
+. +|++|+|+|++++.+..... .+ ..+. ..+.|+++|+||+|+.... ..++..+.+... ....
T Consensus 82 ~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~i~~~~~~~~~~~~~ 151 (187)
T 1zj6_A 82 TN---TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-------TVAEISQFLKLTSIKDHQ 151 (187)
T ss_dssp TT---CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHHTGGGCCSSC
T ss_pred cC---CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC-------CHHHHHHHhChhhhcCCC
Confidence 66 89999999999987655431 11 2222 2579999999999997531 122333333221 1234
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+++++||++|.|+++++++|.+.+..
T Consensus 152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 152 WHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred cEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 589999999999999999999887643
No 89
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.90 E-value=2.3e-24 Score=158.42 Aligned_cols=160 Identities=13% Similarity=0.047 Sum_probs=99.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
...++|+++|++|+|||||+++|++..+...+.++.+.......... ...+.+|||||... |..+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~ 75 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED----------YNRLRPL 75 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CT----------TTTTGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh----------hhhhHHh
Confidence 45789999999999999999999987544444443332221111111 22466999999532 2233345
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccccc--------CCCchHhHHHHHHHH
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAK--------GRRPDENIKSFQQLI 182 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~ 182 (219)
+++. +|++++|+|++++.+..... ....+.. .+.|+++|+||+|+.+... ..+..++..++.+.+
T Consensus 76 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 152 (182)
T 3bwd_D 76 SYRG---ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI 152 (182)
T ss_dssp GGTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH
T ss_pred hccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc
Confidence 5555 89999999999876554332 2222322 4799999999999875422 112334444554444
Q ss_pred HhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+. .+++++||+++.|+++++++|.+.+
T Consensus 153 ~~-----~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 153 GA-----PAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp TC-----SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CC-----CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 31 3799999999999999999998764
No 90
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.90 E-value=3.5e-24 Score=161.49 Aligned_cols=161 Identities=14% Similarity=0.026 Sum_probs=109.2
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+...+.++.+..... ....++ .+.+|||||.... ..+..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~ 75 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQEDY----------SRLRP 75 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEE-EEECSSCEEEEEEECCCCCCCC----------CC--C
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEE-EEEECCEEEEEEEEECCCcHHH----------HHHHH
Confidence 346899999999999999999999876555555555433322 222333 6899999996422 22344
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEcccccccccC------CCchHhHHHHHHHHH
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVAKG------RRPDENIKSFQQLIR 183 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~ 183 (219)
.+++. +|++|+|+|++++.+.... .....+.. .+.|+++|+||+|+...... .+..++.+++.+.++
T Consensus 76 ~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (212)
T 2j0v_A 76 LSYRG---ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG 152 (212)
T ss_dssp GGGTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT
T ss_pred hhccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC
Confidence 55666 8999999999987655432 12222222 38999999999998754211 123344455554443
Q ss_pred hcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
. .+++++||+++.|+++++++|.+.+..
T Consensus 153 ~-----~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 153 A-----AAYIECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp C-----SEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred C-----ceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence 1 479999999999999999999886643
No 91
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=155.34 Aligned_cols=156 Identities=13% Similarity=0.087 Sum_probs=109.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...+||+++|.+|+|||||+++|++..+...+.++.+...... ...++ .+.+|||||..... .+ .
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~~~~----------~~-~ 86 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSE-ETVDHQPVHLRVMDTADLDTPR----------NC-E 86 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCC---CC----------CT-H
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEE-EEECCEEEEEEEEECCCCCcch----------hH-H
Confidence 4468999999999999999999999866666666665443222 22333 57899999954211 11 2
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
.+++. +|++|+|+|++++.+..... .+..+.. .+.|+++|+||+|+... +.+..++.+++.+.++
T Consensus 87 ~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~--- 158 (187)
T 3c5c_A 87 RYLNW---AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY--RQVTKAEGVALAGRFG--- 158 (187)
T ss_dssp HHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT---
T ss_pred HHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc--CccCHHHHHHHHHHcC---
Confidence 35555 89999999999866554322 1111211 58999999999999654 3344555666666553
Q ss_pred CCCCCeEEeec-CCCCChHHHHHHHHHHHh
Q 027757 187 PHHPPWIMTSS-VTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 187 ~~~~~~~~~Sa-~~~~~v~el~~~l~~~~~ 215 (219)
++++++|| +++.|+++++++|.+.+.
T Consensus 159 ---~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 159 ---CLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp ---CEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred ---CcEEEEeecCccccHHHHHHHHHHHHh
Confidence 58999999 899999999999988764
No 92
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=1.4e-23 Score=174.44 Aligned_cols=172 Identities=22% Similarity=0.297 Sum_probs=118.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+|+|++. ......+.+++|.+.. .+.. +..+.+|||||+..........+.|..+..
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 45689999999999999999999997 3455666777776542 2223 347999999997533222233455555544
Q ss_pred -HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC--CCC
Q 027757 114 -GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHP 190 (219)
Q Consensus 114 -~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 190 (219)
.+++. +|++++|+|++++.+.++......+...++|+++|+||+|+.+... . ..++..+.+...+. ...
T Consensus 252 ~~~~~~---ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~--~---~~~~~~~~~~~~l~~~~~~ 323 (436)
T 2hjg_A 252 LKAIDR---SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDE--S---TMKEFEENIRDHFQFLDYA 323 (436)
T ss_dssp HHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCT--T---HHHHHHHHHHHHCGGGTTS
T ss_pred HHHHHh---CCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcch--H---HHHHHHHHHHHhcccCCCC
Confidence 35666 8999999999999998887777777778999999999999976421 1 12233333322221 236
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+++++||++|.|++++++.+.+....+
T Consensus 324 ~~~~~SA~tg~~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 324 PILFMSALTKKRIHTLMPAIIKASENH 350 (436)
T ss_dssp CEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred CEEEEecccCCCHHHHHHHHHHHHHHh
Confidence 899999999999999999998877653
No 93
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.90 E-value=5.5e-24 Score=159.31 Aligned_cols=160 Identities=14% Similarity=0.149 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+++|++..+...+.++.+...... ...++ .+.+|||||.. .|..+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 91 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQE----------DYDRLRP 91 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE-EEETTEEEEEEEECCCCSG----------GGTTTGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE-EEECCEEEEEEEEECCCch----------hHHHHHH
Confidence 3467999999999999999999999765544444444333222 23333 68899999942 2233344
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHHH
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQ 179 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~ 179 (219)
.+++. +|++|+|+|++++.+.... .....+.. .+.|+++|+||+|+..... +.+..++..++.
T Consensus 92 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (201)
T 2gco_A 92 LSYPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA 168 (201)
T ss_dssp GGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred HhcCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHH
Confidence 55555 8999999999986554432 12222222 4899999999999976421 122233333333
Q ss_pred HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+.++ ..+++++||++|.|+++++++|.+.+-
T Consensus 169 ~~~~-----~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 169 NRIS-----AFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp HHTT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhCC-----CcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 3322 137999999999999999999988653
No 94
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.90 E-value=5e-24 Score=157.31 Aligned_cols=160 Identities=13% Similarity=0.106 Sum_probs=109.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|++|+|||||+++|++..+...+.++.+...... ...+. .+.+|||||.. .|..+..
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~----------~~~~~~~ 73 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGSP----------YYDNVRP 73 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EECSSCEEEEEEEEECCSG----------GGTTTGG
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE-EEECCEEEEEEEEECCCCh----------hhhhhHH
Confidence 3468999999999999999999999765555555554443222 22222 68899999953 1223334
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEcccccccc----------cCCCchHhHHHHH
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVA----------KGRRPDENIKSFQ 179 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~ 179 (219)
.+++. +|++|+|+|++++.+.... .....+.. .+.|+++|+||+|+.... .+.+..++..++.
T Consensus 74 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 150 (184)
T 1m7b_A 74 LSYPD---SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 150 (184)
T ss_dssp GGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhcCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH
Confidence 45555 8999999999987655432 11122222 579999999999997531 1334445555555
Q ss_pred HHHHhcCCCCCCeEEeecC-CCCChHHHHHHHHHHHh
Q 027757 180 QLIRENYPHHPPWIMTSSV-TGLGRDELLLHMSQLRN 215 (219)
Q Consensus 180 ~~~~~~~~~~~~~~~~Sa~-~~~~v~el~~~l~~~~~ 215 (219)
+.++. .+++++||+ ++.|++++|+++.+.+-
T Consensus 151 ~~~~~-----~~~~e~Sa~~~~~gi~~l~~~i~~~~l 182 (184)
T 1m7b_A 151 KQIGA-----ATYIECSALQSENSVRDIFHVATLACV 182 (184)
T ss_dssp HHHTC-----SEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred HHcCC-----cEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence 55431 589999999 68999999999988653
No 95
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.90 E-value=9.9e-23 Score=158.16 Aligned_cols=159 Identities=26% Similarity=0.307 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+|+|++..+. ..+.+++|..... +.. +..+.+|||||.......... +.+...|
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~--~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----e~v~~~~ 78 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY--VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID----EKIARDY 78 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH----HHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH----HHHHHHH
Confidence 578999999999999999999997432 4455566654433 222 337999999997533211111 2344555
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
+.. ..+|++++|+|+++..+. ......+.+.++|+++|+||+|+....... .+.+.+.+.++ ++++++
T Consensus 79 ~~~-~~~d~ii~V~D~t~~~~~--~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~---~~~~~l~~~lg------~~vi~~ 146 (258)
T 3a1s_A 79 LLK-GDADLVILVADSVNPEQS--LYLLLEILEMEKKVILAMTAIDEAKKTGMK---IDRYELQKHLG------IPVVFT 146 (258)
T ss_dssp HHH-SCCSEEEEEEETTSCHHH--HHHHHHHHTTTCCEEEEEECHHHHHHTTCC---BCHHHHHHHHC------SCEEEC
T ss_pred Hhh-cCCCEEEEEeCCCchhhH--HHHHHHHHhcCCCEEEEEECcCCCCccchH---HHHHHHHHHcC------CCEEEE
Confidence 543 348999999999985432 344556666799999999999987654332 23455555554 699999
Q ss_pred ecCCCCChHHHHHHHHHHHh
Q 027757 196 SSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~~~ 215 (219)
||++|.|++++++++.+.++
T Consensus 147 SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHhh
Confidence 99999999999999988765
No 96
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.90 E-value=4.2e-24 Score=162.19 Aligned_cols=156 Identities=13% Similarity=0.218 Sum_probs=114.3
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSF 111 (219)
Q Consensus 35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~ 111 (219)
.....+||+++|.+|+|||||+++|+...+...+.++.+++........+. .+.+|||||.. .+..+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~ 80 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE----------KFGGL 80 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGG----------GTSCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChH----------HHhHH
Confidence 345568999999999999999999776557777888888887766555443 68999999943 22233
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (219)
...+++. +|++|+|+|++++.+..... .|+.. .++|+++|+||+|+.+.... .....+.+...
T Consensus 81 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~--- 148 (221)
T 3gj0_A 81 RDGYYIQ---AQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN--- 148 (221)
T ss_dssp CHHHHTT---CCEEEEEEETTCHHHHHTHH--HHHHHHHHHSTTCCEEEEEECTTSSSCSSC----GGGCCHHHHHT---
T ss_pred HHHHHhc---CCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECCcccccccc----HHHHHHHHHcC---
Confidence 4556666 89999999999876654432 23222 48899999999999754321 22333333332
Q ss_pred CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 187 PHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+++++||+++.|+++++++|.+.+.
T Consensus 149 ---~~~~~~Sa~~~~gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 149 ---LQYYDISAKSNYNFEKPFLWLARKLI 174 (221)
T ss_dssp ---CEEEECBGGGTBTTTHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999999988654
No 97
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.90 E-value=1.5e-23 Score=154.32 Aligned_cols=155 Identities=17% Similarity=0.152 Sum_probs=104.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
....++|+++|.+|+|||||+++|++..+ ..+.++.+.+.... ...+..+.+|||||... +..++..+
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~ 85 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEI-VINNTRFLMWDIGGQES----------LRSSWNTY 85 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEE-EETTEEEEEEEESSSGG----------GTCGGGGG
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEE-EECCEEEEEEECCCCHh----------HHHHHHHH
Confidence 35578999999999999999999999854 55556665433211 12345789999999632 22334555
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH--HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh--cCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE--NYPH 188 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 188 (219)
++. +|++|+|+|++++.+..... +...+. ..++|+++|+||+|+.... ..++..+.+.. ....
T Consensus 86 ~~~---~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~i~~~~~~~~~~~~ 155 (181)
T 2h17_A 86 YTN---TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-------TVAEISQFLKLTSIKDH 155 (181)
T ss_dssp GTT---CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSS
T ss_pred hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC-------CHHHHHHHhCcccccCC
Confidence 555 89999999999987665431 222222 2689999999999997531 12222222211 1122
Q ss_pred CCCeEEeecCCCCChHHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
.++++++||+++.|+++++++|.+
T Consensus 156 ~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 156 QWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHT
T ss_pred ceEEEEccCCCCcCHHHHHHHHHh
Confidence 357999999999999999999875
No 98
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.90 E-value=3.6e-24 Score=160.63 Aligned_cols=159 Identities=17% Similarity=0.177 Sum_probs=78.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC--cccccccCCCCeeEEeeEEEecC-----eEEEEeCCCCCCCCCCcchhhhHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRK--KELALTSKKPGKTQLINHFLVNK-----SWYIVDLPGYGFAKAPDVTRMDWS 109 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~--~~~~~~~~~~~~t~~~~~~~~~~-----~~~liDtpg~~~~~~~~~~~~~~~ 109 (219)
...++|+++|++|+|||||+++|++. .+.....++.+.+.....+..++ .+.+|||||. ..+.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~ 87 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS----------DLYK 87 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT----------HHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc----------HHHH
Confidence 34679999999999999999999987 44444444444333333333332 5899999995 3445
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHH
Q 027757 110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI 182 (219)
Q Consensus 110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 182 (219)
.+...+++. +|++|+|+|++++.+..... .+..+.. .++|+++|+||+|+... .+.+..++..++.+.+
T Consensus 88 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-~~~v~~~~~~~~~~~~ 163 (208)
T 2yc2_C 88 EQISQYWNG---VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQ-RHQVRLDMAQDWATTN 163 (208)
T ss_dssp HHHSTTCCC---CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--------CCCHHHHHHHHHHT
T ss_pred HHHHHHHhh---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchh-hccCCHHHHHHHHHHc
Confidence 666666666 89999999999876544321 1222221 47899999999999761 1233344555555443
Q ss_pred HhcCCCCCCeEEeecCC-CCChHHHHHHHHHHHh
Q 027757 183 RENYPHHPPWIMTSSVT-GLGRDELLLHMSQLRN 215 (219)
Q Consensus 183 ~~~~~~~~~~~~~Sa~~-~~~v~el~~~l~~~~~ 215 (219)
+ ++++++||++ +.|+++++++|.+.+.
T Consensus 164 ~------~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 164 T------LDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp T------CEEEECCC-------CHHHHHHHHHHH
T ss_pred C------CEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 2 6899999999 9999999999988654
No 99
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.90 E-value=8e-24 Score=158.17 Aligned_cols=156 Identities=19% Similarity=0.261 Sum_probs=100.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...+|+++|++|+|||||+++|++.. ...+.++.+.+. .....+ ..+.+|||||... ++.++..++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~--~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~ 90 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTS--EELTIAGMTFTTFDLGGHIQ----------ARRVWKNYL 90 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETTEEEEEEEECC--------------CCGGGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC-CCccCCCCCcee--EEEEECCEEEEEEECCCcHh----------hHHHHHHHH
Confidence 35799999999999999999999874 344555554432 223333 4789999999532 222345566
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH--HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH--------
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR-------- 183 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-------- 183 (219)
+. +|++++|+|++++.+..... +...+. ..++|+++|+||+|+... +..+++.++.....
T Consensus 91 ~~---~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 91 PA---INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA----ISEERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp GG---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC----CCHHHHHHHHTCTTTCCCSSCC
T ss_pred hc---CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc----CCHHHHHHHhCccccccccccc
Confidence 66 89999999999876554321 111221 257999999999999752 22333333322111
Q ss_pred ---hcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 184 ---ENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 184 ---~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.......+++++||++|.|+++++++|.+.
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 000123579999999999999999999764
No 100
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.90 E-value=3.3e-23 Score=154.09 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=106.6
Q ss_pred CCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhH
Q 027757 30 RAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDW 108 (219)
Q Consensus 30 ~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~ 108 (219)
-.+.+.....++|+++|++|+|||||+++|++..+. ...++.+.. ...... +..+.+|||||... +
T Consensus 20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~----------~ 86 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNICFTVWDVGGQDK----------I 86 (192)
T ss_dssp GGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEETTEEEEEEECC---------------
T ss_pred HHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEECCEEEEEEECCCCHh----------H
Confidence 334455566899999999999999999999987543 333333321 122222 34789999999632 2
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HH-HHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CA-NWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~-~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
..++..+++. +|++|+|+|++++.+..... .+ ..+.. .+.|+++|+||+|+.... ..+++.+.+.
T Consensus 87 ~~~~~~~~~~---~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~i~~~~~ 156 (192)
T 2b6h_A 87 RPLWRHYFQN---TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM-------PVSELTDKLG 156 (192)
T ss_dssp CTTHHHHHHT---CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHTT
T ss_pred HHHHHHHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC-------CHHHHHHHhC
Confidence 3345566666 89999999999876554321 11 12221 479999999999996531 1233333332
Q ss_pred hcC--CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 184 ENY--PHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 184 ~~~--~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
... ....+++++||+++.|+++++++|.+.+.
T Consensus 157 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 157 LQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred cccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 211 12357899999999999999999988764
No 101
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.90 E-value=1.4e-23 Score=155.87 Aligned_cols=153 Identities=21% Similarity=0.250 Sum_probs=102.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...+|+++|++|+|||||+++|++.. ...+.++.+.+. ..... +..+.++||||... ++.+...++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~-~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~ 88 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDR-LATLQPTWHPTS--EELAIGNIKFTTFDLGGHIQ----------ARRLWKDYF 88 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSC-CCCCCCCCSCEE--EEEEETTEEEEEEECCCSGG----------GTTSGGGGC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC-CCccccCCCCCe--EEEEECCEEEEEEECCCCHH----------HHHHHHHHH
Confidence 35799999999999999999999874 445555555432 22223 34789999999642 122334555
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH-HH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC-----
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD-CA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY----- 186 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----- 186 (219)
+. +|++|+|+|++++.+..... .+ ..+. ..+.|+++|+||+|+... +..+ ++.+.+....
T Consensus 89 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----~~~~---~~~~~~~~~~~~~~~ 158 (190)
T 1m2o_B 89 PE---VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA----VSEA---ELRSALGLLNTTGSQ 158 (190)
T ss_dssp TT---CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC----CCHH---HHHHHTTCSSCCC--
T ss_pred hc---CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC----CCHH---HHHHHhCCccccccc
Confidence 55 89999999999876654321 11 1221 267999999999999752 2222 3333322211
Q ss_pred ----CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 187 ----PHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 187 ----~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
...++++++||++|.|+++++++|.+.
T Consensus 159 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 159 RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp -CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 123579999999999999999998753
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.90 E-value=1e-22 Score=153.71 Aligned_cols=157 Identities=16% Similarity=0.201 Sum_probs=100.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeCCCCCCCCCCcchhhhHHH-H
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDLPGYGFAKAPDVTRMDWSS-F 111 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpg~~~~~~~~~~~~~~~~-~ 111 (219)
...++|+++|++|+|||||+++|++..+...+.+. +.....+..+ ..+.+|||||. ..|.. +
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~ 71 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI---TDSSAIYKVNNNRGNSLTLIDLPGH----------ESLRFQL 71 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC---SCEEEEEECSSTTCCEEEEEECCCC----------HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc---ceeeEEEEecCCCccEEEEEECCCC----------hhHHHHH
Confidence 34689999999999999999999987544433322 2222223333 36899999995 23455 6
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHh---------ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHH
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWL---------GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI 182 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 182 (219)
...|++. +|++|+|+|+++.... ......++ ...++|+++|+||+|+...... ....+.+.+.+
T Consensus 72 ~~~~~~~---~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~l~~~l 144 (214)
T 2fh5_B 72 LDRFKSS---ARAVVFVVDSAAFQRE-VKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA---KLIQQQLEKEL 144 (214)
T ss_dssp HHHHGGG---EEEEEEEEETTTHHHH-HHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH---HHHHHHHHHHH
T ss_pred HHHHHhh---CCEEEEEEECCCcCHH-HHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH---HHHHHHHHHHH
Confidence 7777777 8999999999863211 11222222 1357899999999999764321 22222333222
Q ss_pred H-------------------h-cCC------------CCCCeEEeecCCC------CChHHHHHHHHHH
Q 027757 183 R-------------------E-NYP------------HHPPWIMTSSVTG------LGRDELLLHMSQL 213 (219)
Q Consensus 183 ~-------------------~-~~~------------~~~~~~~~Sa~~~------~~v~el~~~l~~~ 213 (219)
. . ... ..++++++||++| .|++++|++|.+.
T Consensus 145 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 145 NTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 2 1 111 1467999999999 9999999999875
No 103
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.90 E-value=1.6e-23 Score=157.49 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=102.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|.+|+|||||+++|++..+.....++.+...... ...++ .+.+|||||.... ..+...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~ 92 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDY----------DRLRPL 92 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTC----------TTTGGG
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHH----------HHHHHh
Confidence 357999999999999999999999765544444444333222 33333 6889999995422 122334
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHHHH
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQ 180 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~ 180 (219)
++.. +|++|+|+|++++.+.... .....+.. .+.|+++|+||+|+..... +.+..++...+..
T Consensus 93 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 169 (207)
T 2fv8_A 93 SYPD---TDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV 169 (207)
T ss_dssp GCTT---CCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred hcCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH
Confidence 5555 8999999999986554332 12222222 4899999999999976421 1222223333332
Q ss_pred HHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 181 ~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
.+. ..+++++||++|.|+++++++|.+.+.
T Consensus 170 ~~~-----~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 170 RIQ-----AYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HTT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcC-----CCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 221 137899999999999999999988654
No 104
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.90 E-value=1.6e-23 Score=157.41 Aligned_cols=160 Identities=13% Similarity=0.104 Sum_probs=109.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...+||+++|++|+|||||+++|++..+...+.++.+..... .+..++ .+.+|||||.. .|..+..
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 94 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSP----------YYDNVRP 94 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEESSSSEEEEEEEEECCSG----------GGTTTGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEE-EEEECCEEEEEEEEeCCCcH----------hhhHHHH
Confidence 446899999999999999999999986555445555443322 222222 68999999953 2223344
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEcccccccc----------cCCCchHhHHHHH
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVA----------KGRRPDENIKSFQ 179 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~ 179 (219)
.+++. +|++|+|+|++++.+.... .....+.. .+.|+++|+||+|+.... .+.+..++.+++.
T Consensus 95 ~~~~~---~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 171 (205)
T 1gwn_A 95 LSYPD---SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA 171 (205)
T ss_dssp GGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred hhccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH
Confidence 55555 8999999999986654432 11122222 579999999999997531 1334445555555
Q ss_pred HHHHhcCCCCCCeEEeecC-CCCChHHHHHHHHHHHh
Q 027757 180 QLIRENYPHHPPWIMTSSV-TGLGRDELLLHMSQLRN 215 (219)
Q Consensus 180 ~~~~~~~~~~~~~~~~Sa~-~~~~v~el~~~l~~~~~ 215 (219)
+.++. .+++++||+ ++.|++++|+++.+.+-
T Consensus 172 ~~~~~-----~~~~e~SAk~~~~gv~~lf~~l~~~~l 203 (205)
T 1gwn_A 172 KQIGA-----ATYIECSALQSENSVRDIFHVATLACV 203 (205)
T ss_dssp HHHTC-----SEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCC-----CEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence 55431 579999999 68999999999988654
No 105
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.89 E-value=2.3e-22 Score=151.66 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=104.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-cccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKE-LALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT 112 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~ 112 (219)
...+||+|+|.+|+|||||+|+|++... .....+..+.+........++ .+.++||+|.. ++ +..+.
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~-------~~--~~~l~ 105 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK-------GE--NEWLH 105 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT-------HH--HHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc-------ch--hhhHH
Confidence 3458999999999999999999997522 111112233232223333333 46789998842 22 24455
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
..+++. +|++|+|+|+++..++.... ....+. ..++|+++|+||+|+... +.+..++.+.+...+.
T Consensus 106 ~~~~~~---a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~--r~v~~~e~~~~a~~~~---- 176 (211)
T 2g3y_A 106 DHCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD---- 176 (211)
T ss_dssp HCCCCC---CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT----
T ss_pred HHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcC--ceEeHHHHHHHHHHcC----
Confidence 666666 89999999999876654432 112222 247999999999999754 3333333333333332
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||++|.|++++|++|.+.+..
T Consensus 177 --~~~~e~SAk~g~~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 177 --CKFIETSAAVQHNVKELFEGIVRQVRL 203 (211)
T ss_dssp --CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999887644
No 106
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.89 E-value=4e-23 Score=151.96 Aligned_cols=158 Identities=15% Similarity=0.132 Sum_probs=105.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
...++|+++|++|+|||||+++|++..+ ..+.++.+.... .... +..+.++||||.... ...+..+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~ 82 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTSI----------RPYWRCY 82 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEE--EEEETTEEEEEEEEC----C----------CTTGGGT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceE--EEEECCEEEEEEECCCCHhH----------HHHHHHH
Confidence 4578999999999999999999998744 555666653332 2222 457899999996421 1122344
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPH 188 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 188 (219)
+.. +|++++|+|++++.+..... .+ ..+. ..+.|+++|+||+|+.... ..++..+.+... ...
T Consensus 83 ~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~i~~~~~~~~~~~~ 152 (183)
T 1moz_A 83 YAD---TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-------SASEVSKELNLVELKDR 152 (183)
T ss_dssp TTT---EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-------CHHHHHHHTTTTTCCSS
T ss_pred hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC-------CHHHHHHHhCcccccCC
Confidence 444 89999999999887654421 12 2222 2678999999999997531 122333332221 112
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
..+++++||+++.|+++++++|.+.+.+.
T Consensus 153 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 153 SWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp CEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred ceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 34799999999999999999999887654
No 107
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.89 E-value=3e-22 Score=150.59 Aligned_cols=179 Identities=34% Similarity=0.525 Sum_probs=115.7
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
.+-....+|+++|++|+|||||+|+|++..+...+.+..+++.....+..++.+.++||||+............|.....
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 44455679999999999999999999997545666777787766555555568899999997543222222234555556
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeE
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI 193 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (219)
.++.....++++++++|++.+.+..+..+..++...++|+++|.||+|+....++. ...+.....+.. ......++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~---~~~~~~~~~~~~-~~~~~~~~ 176 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK---AQLNMVREAVLA-FNGDVQVE 176 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH---HHHHHHHHHHGG-GCSCEEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH---HHHHHHHHHHHh-cCCCCceE
Confidence 66655556899999999998777655566677777889999999999987642110 012222222222 22235678
Q ss_pred EeecCCCCChHHHHHHHHHHHhh
Q 027757 194 MTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 194 ~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++|++++.|+++++++|.+....
T Consensus 177 ~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 177 TFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHC-
T ss_pred EEeecCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999887654
No 108
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=4.7e-23 Score=161.39 Aligned_cols=162 Identities=20% Similarity=0.196 Sum_probs=111.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+|+|++.. ....+.+++|..... +. .+..+.+|||||..............+.+...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 5799999999999999999999974 355566666654322 22 245799999999754321110011112344444
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
+. ...+|++|+|+|+++.. .......++.+.++|+++|+||+|+...... ....+.+.+.++ ++++++
T Consensus 81 ~~-~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~lg------~~~i~~ 148 (274)
T 3i8s_A 81 IL-SGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNI---RIEIDALSARLG------CPVIPL 148 (274)
T ss_dssp HH-HTCCSEEEEEEEGGGHH--HHHHHHHHHHHHTCCEEEEEECHHHHHHTTE---EECHHHHHHHHT------SCEEEC
T ss_pred Hh-hcCCCEEEEEecCCChH--HHHHHHHHHHhcCCCEEEEEECccchhhhhH---HHHHHHHHHhcC------CCEEEE
Confidence 42 23389999999999743 2345566677779999999999998764322 123445555444 689999
Q ss_pred ecCCCCChHHHHHHHHHHH
Q 027757 196 SSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~~ 214 (219)
||++|.|++++++++.+.+
T Consensus 149 SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 149 VSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp CCGGGHHHHHHHHHHHTCC
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 9999999999999997754
No 109
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.89 E-value=4.7e-23 Score=152.58 Aligned_cols=159 Identities=19% Similarity=0.121 Sum_probs=105.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
...++|+++|++|+|||||+++|++..+ ....++.+...... ...+..+.+|||||...... ++..++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~----------~~~~~~ 87 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVGVNLETL-QYKNISFEVWDLGGQTGVRP----------YWRCYF 87 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCC-EEECSSTTCCEEEE-EETTEEEEEEEECCSSSSCC----------CCSSSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCC-CCcCCCCceEEEEE-EECCEEEEEEECCCCHhHHH----------HHHHHh
Confidence 3578999999999999999999988743 33444444332211 11244789999999642211 112333
Q ss_pred hccCCccEEEEEEeCCCCCCcccHH--HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH 189 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 189 (219)
+. +|++|+|+|++++.+..... +...+.. .+.|+++|+||+|+.... ..++..+.+... ....
T Consensus 88 ~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~ 157 (189)
T 2x77_A 88 SD---TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA-------SEAEIAEQLGVSSIMNRT 157 (189)
T ss_dssp TT---CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSSC
T ss_pred hc---CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC-------CHHHHHHHhChhhccCCc
Confidence 44 89999999999887654421 2222222 479999999999997542 122333332211 1223
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.+++++||+++.|++++++++.+.+...
T Consensus 158 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 158 WTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred eEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 5799999999999999999999877543
No 110
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.89 E-value=5.2e-23 Score=153.41 Aligned_cols=167 Identities=16% Similarity=0.082 Sum_probs=100.5
Q ss_pred CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE----ecCeEEEEeCCCCCCCCCCcchhhh
Q 027757 32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL----VNKSWYIVDLPGYGFAKAPDVTRMD 107 (219)
Q Consensus 32 ~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~liDtpg~~~~~~~~~~~~~ 107 (219)
...+....+||+++|.+|+|||||++++.+. +..........+....... ....+.+|||||....
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------- 82 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF--------- 82 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCT---------
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHH---------
Confidence 3445566899999999999999999999986 3433222121111111111 1237999999995321
Q ss_pred HHHHH---HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhH-HHH
Q 027757 108 WSSFT---KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENI-KSF 178 (219)
Q Consensus 108 ~~~~~---~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~ 178 (219)
.... ..+++. +|++|+|+|+++........+..|+.. .+.|+++|+||+|+.+.+........+ .+.
T Consensus 83 -~~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~ 158 (196)
T 3llu_A 83 -FDPTFDYEMIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA 158 (196)
T ss_dssp -TCTTCCHHHHHHT---CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred -Hhhhhhccccccc---CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHH
Confidence 1122 456666 899999999998622222333445443 589999999999987532110000111 111
Q ss_pred HHHHHhcC--CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 179 QQLIRENY--PHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 179 ~~~~~~~~--~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.+.+...+ ...++++++||++ .|++++|+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 159 NDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence 22333322 2346899999999 9999999998764
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.89 E-value=5.9e-22 Score=146.36 Aligned_cols=162 Identities=23% Similarity=0.241 Sum_probs=109.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE--eeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL--INHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~--~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|++|+|||||+++|++..+. ....++++.. ...+.. +..+.+|||||....... ...+.+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~ 79 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVY--IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN----SIDEIIARD 79 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSS----SHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc--ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccc----cHHHHHHHH
Confidence 4579999999999999999999996432 2333343332 233333 347899999997533211 122345555
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
+++. ..+|++++|+|+++.. ........+...+.|+++|+||+|+....... ...+++.+.++ .++++
T Consensus 80 ~~~~-~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~------~~~~~ 147 (188)
T 2wjg_A 80 YIIN-EKPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLGIE---IDVDKLEKILG------VKVVP 147 (188)
T ss_dssp HHHH-HCCSEEEEEEEGGGHH--HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCC---CCHHHHHHHHT------SCEEE
T ss_pred HHhc-cCCCEEEEEecchhHH--HHHHHHHHHHhcCCCEEEEEEhhhccccccch---HHHHHHHHHhC------CCeEE
Confidence 6543 2279999999998522 11233344455789999999999987543222 23455555443 58999
Q ss_pred eecCCCCChHHHHHHHHHHHhhh
Q 027757 195 TSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+||+++.|++++++++.+.+...
T Consensus 148 ~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 148 LSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CBGGGTBSHHHHHHHHHHHHTTC
T ss_pred EEecCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999998877543
No 112
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.89 E-value=1.8e-22 Score=157.70 Aligned_cols=159 Identities=24% Similarity=0.313 Sum_probs=112.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
.++|+++|++|+|||||+|+|++.. ....+.+++|........ +..+.+|||||........ ..+.+...|+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~----~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS----PEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS----HHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC----hHHHHHHHHH
Confidence 5789999999999999999999964 345566676664433322 4579999999965332111 1245566676
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
.. ..+|++|+|+|+++..+ ......++.+.++|+++|+||+|+....... ...+.+.+.++ ++++++|
T Consensus 77 ~~-~~~d~vi~V~D~t~~e~--~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~---~~~~~l~~~lg------~~vi~~S 144 (272)
T 3b1v_A 77 LS-QRADSILNVVDATNLER--NLYLTTQLIETGIPVTIALNMIDVLDGQGKK---INVDKLSYHLG------VPVVATS 144 (272)
T ss_dssp HT-TCCSEEEEEEEGGGHHH--HHHHHHHHHHTCSCEEEEEECHHHHHHTTCC---CCHHHHHHHHT------SCEEECB
T ss_pred hc-CCCCEEEEEecCCchHh--HHHHHHHHHhcCCCEEEEEEChhhCCcCCcH---HHHHHHHHHcC------CCEEEEE
Confidence 54 34899999999987432 2334445556789999999999987543322 23455555553 6899999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q 027757 197 SVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 197 a~~~~~v~el~~~l~~~~~ 215 (219)
|++|.|++++++++.+.+.
T Consensus 145 A~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTTBSHHHHHHHHHHSCT
T ss_pred ccCCCCHHHHHHHHHHHHh
Confidence 9999999999999987553
No 113
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.89 E-value=6.9e-22 Score=154.62 Aligned_cols=160 Identities=23% Similarity=0.288 Sum_probs=111.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+|+|++..+ ...+.++++... ..... +..+.++||||.......... +.+...|
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----~~~~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ--HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID----ELIARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE--EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH----HHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH----HHHHHHh
Confidence 57999999999999999999999753 445555555443 22332 336899999997533222111 2344555
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
+.. ..+|++++|+|+++.. ........+...+ +|+++|+||+|+........ ..+.+.+.++ +++++
T Consensus 77 ~~~-~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~---~~~~l~~~lg------~~~~~ 144 (271)
T 3k53_A 77 ILD-GNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKI---DIKKMRKELG------VPVIP 144 (271)
T ss_dssp HHT-TCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCC---CHHHHHHHHS------SCEEE
T ss_pred hhc-cCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHH---HHHHHHHHcC------CcEEE
Confidence 532 3389999999998752 2233344444556 99999999999876543333 2455555554 68999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q 027757 195 TSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+||++|.|++++++++.+.+..
T Consensus 145 ~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 145 TNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp CBGGGTBTHHHHHHHHHHHHHT
T ss_pred EEeCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999987654
No 114
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.89 E-value=4.9e-22 Score=165.38 Aligned_cols=161 Identities=22% Similarity=0.230 Sum_probs=107.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE--E-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF--L-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~--~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
++|+|+|.+|+|||||+|+|++.. .+.+.+.+++|++.... . .+..+.+|||||+..... ...+..+......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~-~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGG-GCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-CceecCCCCCccceeeEEEEECCeEEEEEECCCcccccc-chHHHHHHHHHHHHH
Confidence 689999999999999999999973 55677888888764322 2 344799999999753221 112334556666777
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
+. +|++|+|+|++++.+..+..+..++...++|+++|+||+|+.... ..+....+.. ++. .+++++|
T Consensus 80 ~~---ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~--------~~~~~~~~~~-lg~-~~~~~iS 146 (439)
T 1mky_A 80 RE---ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF--------EREVKPELYS-LGF-GEPIPVS 146 (439)
T ss_dssp TT---CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH--------HHHTHHHHGG-GSS-CSCEECB
T ss_pred Hh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc--------HHHHHHHHHh-cCC-CCEEEEe
Confidence 77 999999999999888777777788887889999999999975320 0111012211 111 2679999
Q ss_pred cCCCCChHHHHHHHHHHHh
Q 027757 197 SVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 197 a~~~~~v~el~~~l~~~~~ 215 (219)
|++|.|++++++++.+.+.
T Consensus 147 A~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 147 AEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcc
Confidence 9999999999999987664
No 115
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.88 E-value=4.8e-22 Score=145.25 Aligned_cols=156 Identities=26% Similarity=0.266 Sum_probs=102.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEEecC-eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFLVNK-SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
..+|+++|++|+|||||+|+|++.. .....+.++++.+. .....++ .+.++||||..... ....+..+... ..+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~~-~~~ 80 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGRE-AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS-DEVERIGIERA-WQE 80 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC-CSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS-SHHHHHHHHHH-HHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-cceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch-hHHHHHHHHHH-HHH
Confidence 4689999999999999999999863 33345555555432 2333333 68899999975321 11111111111 134
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
++. +|++++|+|++++.+.........+.. .++|+++|+||+|+..... ... .. ...++
T Consensus 81 ~~~---ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~-----------~~--~~~~~ 142 (172)
T 2gj8_A 81 IEQ---ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--GMS-----------EV--NGHAL 142 (172)
T ss_dssp HHT---CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EEE-----------EE--TTEEE
T ss_pred HHh---CCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--hhh-----------hc--cCCce
Confidence 555 899999999999877654433333322 4689999999999854210 000 00 12579
Q ss_pred EEeecCCCCChHHHHHHHHHHHh
Q 027757 193 IMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++||+++.|+++++++|.+.+.
T Consensus 143 ~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 143 IRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp EECCTTTCTTHHHHHHHHHHHC-
T ss_pred EEEeCCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999988654
No 116
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=4.5e-22 Score=165.47 Aligned_cols=159 Identities=21% Similarity=0.279 Sum_probs=104.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+|+|.+|+|||||+|+|++. ..+.+.+.+++|++...... +..+.+|||||+...... ....+......+
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~~~~ 79 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--FLAQIRQQAEIA 79 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC---------C--HHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh--HHHHHHHHHHHH
Confidence 479999999999999999999997 45677888898877554433 347999999997532211 334556666777
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
++. +|++|+|+|+.++.+..+..+..++...++|+++|+||+|+...... ..++. . ++. .+++++
T Consensus 80 ~~~---ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~------~~~~~----~-lg~-~~~~~i 144 (436)
T 2hjg_A 80 MDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN------IYDFY----S-LGF-GEPYPI 144 (436)
T ss_dssp HHH---CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C------CCSSG----G-GSS-CCCEEC
T ss_pred HHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh------HHHHH----H-cCC-CCeEEE
Confidence 777 89999999999998888877788888889999999999998753210 11111 1 111 268999
Q ss_pred ecCCCCChHHHHHHHHHHHh
Q 027757 196 SSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~~~ 215 (219)
||++|.|++++++++.+.+.
T Consensus 145 SA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 145 SGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp BTTTTBTHHHHHHHHHHTGG
T ss_pred eCcCCCChHHHHHHHHHhcC
Confidence 99999999999999987664
No 117
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.88 E-value=1.1e-22 Score=163.40 Aligned_cols=187 Identities=21% Similarity=0.234 Sum_probs=122.9
Q ss_pred ccccccccceeeeeccCCCCCCCCCC--------------CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe
Q 027757 13 YAGHSQIKEVEFVKSSGRAKDCPKDD--------------RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78 (219)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~ 78 (219)
..+.....+..|..+..+.++.+... .++|+|+|.+|||||||+|+|++.. ......+.+|...
T Consensus 118 ~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p 195 (342)
T 1lnz_A 118 RGGRGGRGNSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVP 195 (342)
T ss_dssp CCCCCCCCGGGSCBTTBSSCCCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCC
T ss_pred CCCCCccCccccccccccccccccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCc
Confidence 44555677778877777776665544 3579999999999999999999863 3334455455433
Q ss_pred e--EEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC---CCCcccH-HHHHHhcc--
Q 027757 79 N--HFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV---PPQKIDL-DCANWLGR-- 148 (219)
Q Consensus 79 ~--~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~---~~~~~~~-~~~~~~~~-- 148 (219)
. .+..+ ..+.++||||+... ...+..+...|++..+.+|++|+|+|+++ .....+. .....+..
T Consensus 196 ~~g~v~~~~~~~~~l~DtPG~i~~------a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~ 269 (342)
T 1lnz_A 196 NLGMVETDDGRSFVMADLPGLIEG------AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN 269 (342)
T ss_dssp CEEEEECSSSCEEEEEEHHHHHHH------TTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC
T ss_pred eEEEEEeCCCceEEEecCCCCccc------ccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhh
Confidence 2 23333 47999999996321 01111233344444445899999999987 3333322 12222322
Q ss_pred ---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 149 ---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 149 ---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.++|+++|+||+|+.... +..+++.+. +....+++++||+++.|+++++++|.+.+...
T Consensus 270 ~~l~~~p~ilV~NK~Dl~~~~------e~~~~l~~~----l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 270 LRLTERPQIIVANKMDMPEAA------ENLEAFKEK----LTDDYPVFPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp SSTTTSCBCBEEECTTSTTHH------HHHHHHHHH----CCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred hhhcCCCEEEEEECccCCCCH------HHHHHHHHH----hhcCCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence 479999999999987531 223333333 33226899999999999999999999887653
No 118
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.88 E-value=6.6e-22 Score=158.68 Aligned_cols=157 Identities=16% Similarity=0.154 Sum_probs=105.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
...++|+|+|.+|+|||||+++|++..+... .++.+.. ...... +..+.++||||.. .|..+...+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~ 229 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKNISFTVWDVGGQD----------KIRPLWRHY 229 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETTEEEEEEECC---------------CCSHHHH
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCcEEEEEEECCCCH----------hHHHHHHHH
Confidence 3457999999999999999999998754322 2222222 122222 3378999999932 233445666
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PH 188 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 188 (219)
++. +|++|+|+|++++.+..... +...+.. .++|+++|+||+|+.... ..+++...+.... ..
T Consensus 230 ~~~---ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-------~~~~i~~~~~~~~~~~~ 299 (329)
T 3o47_A 230 FQN---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-------NAAEITDKLGLHSLRHR 299 (329)
T ss_dssp HTT---EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHHTCTTCCSS
T ss_pred hcc---CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-------CHHHHHHHhchhhhhcC
Confidence 766 89999999999877765431 2222222 489999999999997642 2344444443322 12
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.++++++||++|.|+++++++|.+.+..
T Consensus 300 ~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 300 NWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred CCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 4579999999999999999999987754
No 119
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.80 E-value=3.4e-24 Score=160.74 Aligned_cols=160 Identities=13% Similarity=0.069 Sum_probs=103.9
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
....++|+++|.+|+|||||+++|++..+.....++.+..........+ ..+.+|||||.. .+..+..
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~ 96 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE----------DYDRLRP 96 (204)
Confidence 3567899999999999999999999875444333333322211111112 245689999842 3345556
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH--HHHHhccC--CCcEEEEEEcccccccccC----------CCchHhHHHHH
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGRN--NIPLTFVFTKCDKMKVAKG----------RRPDENIKSFQ 179 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~p~iiv~nK~D~~~~~~~----------~~~~~~~~~~~ 179 (219)
.+++. +|++|+|+|++++.+..... ....+... ++|+++|+||+|+.+.... .+..++..++.
T Consensus 97 ~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 3th5_A 97 LSYPQ---TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 173 (204)
Confidence 66666 89999999999877665532 22233332 7899999999999754211 11111122222
Q ss_pred HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
+.++ ..+++++||++|.|+++++++|.+.
T Consensus 174 ~~~~-----~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 174 KEIG-----AVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 2211 1378999999999999999998764
No 120
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.87 E-value=6e-25 Score=164.27 Aligned_cols=159 Identities=18% Similarity=0.215 Sum_probs=101.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+|+|++..+.....+..+.+.....+..++ .+.+|||||..... .+..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~ 100 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TITS 100 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC----------CCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH----------HHHH
Confidence 3468999999999999999999998765554444445445444444444 68999999954221 1123
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (219)
.+++. +|++|+|+|++++.+..... .+..+.. .++|+++|+||+|+.+... +..+..+++.+.+.
T Consensus 101 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~--v~~~~~~~~~~~~~------ 169 (199)
T 3l0i_B 101 SYYRG---AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV--VDYTTAKEFADSLG------ 169 (199)
T ss_dssp C--CC---CSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CC--CCSCC-CHHHHTTT------
T ss_pred HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcccc--CCHHHHHHHHHHcC------
Confidence 34444 89999999999876654321 1122222 4789999999999976432 22233344444332
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
++++++||+++.|+++++++|.+.+..
T Consensus 170 ~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 170 IPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp CCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999876654
No 121
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=5.1e-22 Score=165.99 Aligned_cols=167 Identities=20% Similarity=0.258 Sum_probs=108.4
Q ss_pred CCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhh
Q 027757 31 AKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMD 107 (219)
Q Consensus 31 ~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~ 107 (219)
...+.+...++|+|+|.+|+|||||+|+|++. ..+.+.+.+++|.+...... +..+.+|||||+.. .....+..
T Consensus 15 ~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~--~~~~~~~~ 91 (456)
T 4dcu_A 15 VPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI--GDEPFLAQ 91 (456)
T ss_dssp --------CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHH
T ss_pred CCChhhcCCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCC--cchHHHHH
Confidence 34455566789999999999999999999997 45667788888877654443 34799999999762 22334666
Q ss_pred HHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757 108 WSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP 187 (219)
Q Consensus 108 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (219)
+......+++. +|++|+|+|+.++.+..+..+.+++...++|+++|+||+|+.... ....++ +...+
T Consensus 92 ~~~~~~~~~~~---ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~------~~~~e~---~~lg~- 158 (456)
T 4dcu_A 92 IRQQAEIAMDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR------ANIYDF---YSLGF- 158 (456)
T ss_dssp HHHHHHHHHHH---CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------------CCS---GGGSS-
T ss_pred HHHHHHhhHhh---CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh------hhHHHH---HHcCC-
Confidence 77777888888 899999999999888888888899998999999999999986431 011111 11111
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..++++||++|.|++++++++.+...
T Consensus 159 --~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 159 --GEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp --SSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred --CceEEeecccccchHHHHHHHHhhcc
Confidence 25689999999999999999977553
No 122
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.87 E-value=1.9e-21 Score=144.61 Aligned_cols=156 Identities=14% Similarity=0.116 Sum_probs=99.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcc--cccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKE--LALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~--~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
.+||+++|.+|+|||||+|+|++... .....+ .+.+........++ .+.++||+|.... . ..+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-------~--~~~~~ 75 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-LGEDTYERTLMVDGESATIILLDMWENKGE-------N--EWLHD 75 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GG-GCTTEEEEEEEETTEEEEEEEECCCCC-------------CTTGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc-cceeEEEEEEEECCeEEEEEEEEeccCcch-------h--hhHHH
Confidence 57999999999999999999997421 111111 22222222233333 4678999885321 1 12335
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
.+++. +|++++|+|+++..++.... ....+. ..+.|+++|+||+|+... +.+..++...+... .+
T Consensus 76 ~~~~~---~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~--r~v~~~~~~~~a~~----~~- 145 (192)
T 2cjw_A 76 HCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRX--REVSVSEGRAXAVV----FD- 145 (192)
T ss_dssp GHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHH----TT-
T ss_pred hhccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcc--ccccHHHHHHHHHH----hC-
Confidence 56666 89999999999876654432 111121 247899999999998753 22333333332222 11
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++++||++|.|++++|+++.+.+.
T Consensus 146 -~~~~e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 146 -XKFIETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp -CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -CceEEeccccCCCHHHHHHHHHHHHH
Confidence 57999999999999999999988653
No 123
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.87 E-value=3.7e-21 Score=160.09 Aligned_cols=172 Identities=27% Similarity=0.355 Sum_probs=112.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEecC-eEEEEeCCCCCCCCCCc-chhhhHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLVNK-SWYIVDLPGYGFAKAPD-VTRMDWSSFT 112 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpg~~~~~~~~-~~~~~~~~~~ 112 (219)
...++|+|+|++|+|||||+|+|++. ....+.+.+++|.+.. .+..++ .+.++||||+....... ...+.|....
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 34689999999999999999999997 4556777888776542 333343 68899999974221110 1111121111
Q ss_pred -HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCC
Q 027757 113 -KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHH 189 (219)
Q Consensus 113 -~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 189 (219)
..+++. +|++++|+|++++.+..+..+...+...++|+++|+||+|+.+... ...+++.+.+...+ ...
T Consensus 257 ~~~~i~~---ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~ 328 (439)
T 1mky_A 257 VVDSIEK---ADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHRE-----KRYDEFTKLFREKLYFIDY 328 (439)
T ss_dssp HHHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGG-----GCHHHHHHHHHHHCGGGTT
T ss_pred HHHHHhh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchh-----hHHHHHHHHHHHHhccCCC
Confidence 234455 7999999999998887776667777778999999999999875421 11222322222222 123
Q ss_pred CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 190 PPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.+++++||++|.|++++++.+.+....+
T Consensus 329 ~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 329 SPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp SCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 6899999999999999999998876654
No 124
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.86 E-value=3e-21 Score=142.45 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=98.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC--cccccccCCCCeeEEeeEEE------ecCeEEEEeCCCCCCCCCCcchhhhHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK--KELALTSKKPGKTQLINHFL------VNKSWYIVDLPGYGFAKAPDVTRMDWSS 110 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~--~~~~~~~~~~~~t~~~~~~~------~~~~~~liDtpg~~~~~~~~~~~~~~~~ 110 (219)
.+||+++|++|+|||||+++|++. .+...+.++.+......... ....+.+|||+| ++.|..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~ 71 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAG----------REEFYS 71 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECS----------HHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCC----------CHHHHH
Confidence 479999999999999999999984 22333334444332211111 133688899988 344555
Q ss_pred HHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh
Q 027757 111 FTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE 184 (219)
Q Consensus 111 ~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 184 (219)
+...+++. +|++++|+|++++. +... +..|+.. .+.|+++|+||+|+...... .....+..+.+..
T Consensus 72 ~~~~~~~~---~~~~i~v~d~~~~~~s~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~ 143 (184)
T 2zej_A 72 THPHFMTQ---RALYLAVYDLSKGQAEVDA--MKPWLFNIKARASSSPVILVGTHLDVSDEKQR---KACMSKITKELLN 143 (184)
T ss_dssp TSHHHHHH---SEEEEEEEEGGGCHHHHHT--HHHHHHHHHHHCTTCEEEEEEECGGGCCHHHH---HHHHHHHHHHTTT
T ss_pred hhHHHccC---CcEEEEEEeCCcchhHHHH--HHHHHHHHHhhCCCCcEEEEEECCCcccchhh---HHHHHHHHHHHHH
Confidence 66777777 89999999998863 3322 2233332 47899999999998753110 0011122233322
Q ss_pred cCCCCCC----eEEeecCCCC-ChHHHHHHHHHHHhhh
Q 027757 185 NYPHHPP----WIMTSSVTGL-GRDELLLHMSQLRNYW 217 (219)
Q Consensus 185 ~~~~~~~----~~~~Sa~~~~-~v~el~~~l~~~~~~~ 217 (219)
.. ..+ ++++||+++. |++++++.+.+.+...
T Consensus 144 ~~--~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 144 KR--GFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp CT--TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred hc--CCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 22 244 8999999997 9999999998776544
No 125
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=2.2e-21 Score=162.31 Aligned_cols=156 Identities=23% Similarity=0.285 Sum_probs=110.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCC-CCCCCcchhhhHHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYG-FAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~-~~~~~~~~~~~~~~~~~~~ 115 (219)
++|+|+|.+|+|||||+|+|++. ..+...+.+++|.+.. .+.. +..+.++||||+. .... .....-. .....+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~-~ve~~gi-~~~~~~ 320 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND-LVERLGI-ERTLQE 320 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCT-TCCCCCH-HHHHHH
T ss_pred CEEEEECcCCCcHHHHHHHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchh-hHHHHHH-HHHHHH
Confidence 79999999999999999999997 4566777777777542 2223 3479999999976 3321 1111111 122345
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
+.. +|++|+|+|++++.+..+.++++.+ .++|+++|+||+|+.+. .. .+++.+.+ +...+++++
T Consensus 321 ~~~---aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~----~~---~~~~~~~~----~~~~~~i~i 384 (482)
T 1xzp_A 321 IEK---ADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEK----IN---EEEIKNKL----GTDRHMVKI 384 (482)
T ss_dssp HHH---CSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCC----CC---HHHHHHHH----TCSTTEEEE
T ss_pred hhc---ccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccc----cC---HHHHHHHh----cCCCcEEEE
Confidence 555 8999999999998877666666655 37899999999999642 11 12222221 123589999
Q ss_pred ecCCCCChHHHHHHHHHHH
Q 027757 196 SSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 196 Sa~~~~~v~el~~~l~~~~ 214 (219)
||+++.|+++++++|.+.+
T Consensus 385 SAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 385 SALKGEGLEKLEESIYRET 403 (482)
T ss_dssp EGGGTCCHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998854
No 126
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=1.8e-21 Score=152.47 Aligned_cols=167 Identities=19% Similarity=0.234 Sum_probs=93.5
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccc--------cCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcch
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALT--------SKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVT 104 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~--------~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~ 104 (219)
++..++|+++|.+|+|||||+|+|++....... .++.+.+........++ .+.++||||++.....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~--- 81 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN--- 81 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCC---
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccc---
Confidence 355789999999999999999999887422221 11122222222222233 7899999998644221
Q ss_pred hhhHHHHH-------HHHhhc----------cCCccEEEEEEeCCC-CCCcccHHHHHHhccCCCcEEEEEEcccccccc
Q 027757 105 RMDWSSFT-------KGYFLN----------RESLVGVLLLIDASV-PPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVA 166 (219)
Q Consensus 105 ~~~~~~~~-------~~~~~~----------~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 166 (219)
...|..+. ..|+.. ...+|+++++++.+. +....+..+++++.. ++|+++|+||+|+....
T Consensus 82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHH
Confidence 22233333 444443 122578899997765 666666777788877 89999999999987542
Q ss_pred cCCCchHhHHHHHHHHHhcC-CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 167 KGRRPDENIKSFQQLIRENY-PHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
+...+.+.+...+ ...++++.+|++++.|+++++++|.+.
T Consensus 161 -------e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~ 201 (274)
T 3t5d_A 161 -------ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR 201 (274)
T ss_dssp -------HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred -------HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence 2332222222111 123678999999999999999998764
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.86 E-value=3.4e-21 Score=160.98 Aligned_cols=157 Identities=23% Similarity=0.215 Sum_probs=90.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEec-CeEEEEeCCCCCCCCCCcchhhhHHHH-HHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSF-TKG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~-~~~ 114 (219)
.++|+|+|.+|+|||||+|+|++. .....++.+++|.+.. .+..+ ..+.+|||||+..... . ++.+ ...
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~-~-----ve~~gi~~ 305 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE-E-----IEHEGIRR 305 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh-H-----HHHHHHHH
Confidence 468999999999999999999997 4566777788777653 23333 3799999999753211 0 0111 011
Q ss_pred HhhccCCccEEEEEEeCCCCCCc----ccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQK----IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~----~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
.....+.+|++++|+|++++.+. .....+..+. ++|+++|+||+|+..... ...+++.+. . + .
T Consensus 306 ~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~-----~~~~~l~~~-~--~---~ 372 (476)
T 3gee_A 306 SRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANAD-----ALIRAIADG-T--G---T 372 (476)
T ss_dssp --CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTH-----HHHHHHHHH-H--T---S
T ss_pred HHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccc-----hhHHHHHhc-C--C---C
Confidence 12233448999999999998877 3334444444 799999999999976421 111222221 1 1 5
Q ss_pred CeEEeecCCCCChHHHHHHHHHHHh
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++++||++|.|+++++++|.+.+.
T Consensus 373 ~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 373 EVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHh
Confidence 8999999999999999999988775
No 128
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.86 E-value=9.4e-22 Score=157.70 Aligned_cols=159 Identities=13% Similarity=0.049 Sum_probs=106.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|.+|+|||||++++++..+.....++.+..... ....++ .+.+|||||... +..+...
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~ 222 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED----------YDRLRPL 222 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGG----------GTTTGGG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEE-EEEECCEEEEEEEEeCCCchh----------hhHHHHH
Confidence 35899999999999999999999875544444444333322 222232 456999999532 2233445
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHHHH
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQ 180 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~ 180 (219)
+++. +|++++|+|++++.+..+.. ....+.. .++|+++|+||+|+.+... +.+..+...++.+
T Consensus 223 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 299 (332)
T 2wkq_A 223 SYPQ---TDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK 299 (332)
T ss_dssp GCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred hccC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH
Confidence 5555 89999999999876654431 1222222 3899999999999865321 2233334444443
Q ss_pred HHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 181 ~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..+ ..+++++||++|.|+++++++|.+.+-
T Consensus 300 ~~~-----~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 300 EIG-----AVKYLECSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HTT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HcC-----CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence 322 137999999999999999999987653
No 129
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.86 E-value=7.2e-22 Score=162.59 Aligned_cols=163 Identities=23% Similarity=0.297 Sum_probs=106.5
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cC-eEEEEeCCCCCCCCCCcchhhhH
Q 027757 33 DCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NK-SWYIVDLPGYGFAKAPDVTRMDW 108 (219)
Q Consensus 33 ~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~-~~~liDtpg~~~~~~~~~~~~~~ 108 (219)
..+....++|+|+|.+|+|||||+|+|++.. .....+.+++|........ +. .+.+|||||+.... ..+...+
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~--~l~~~~~ 104 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQN-VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG--ELGRLRV 104 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCC--TTCCCCH
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCC-CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc--chhHHHH
Confidence 4455678999999999999999999999974 4445566666654332222 22 79999999976432 1122222
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
+. ...++.. +|++|+|+|+ .........+.++...++|+++|+||+|+...... +..+.+...+
T Consensus 105 ~~-~~~~l~~---aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--------~~~~~l~~~~-- 168 (423)
T 3qq5_A 105 EK-ARRVFYR---ADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--------ELKGLYESRY-- 168 (423)
T ss_dssp HH-HHHHHTS---CSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT--------HHHHHSSCCT--
T ss_pred HH-HHHHHhc---CCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH--------HHHHHHHHHc--
Confidence 22 3345555 8999999999 34445566777888889999999999999865321 2233333322
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.++++++||++|.|+++++++|.+.+
T Consensus 169 g~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 169 EAKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 26899999999999999999998876
No 130
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.86 E-value=1.8e-21 Score=154.83 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=104.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE----ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL----VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
.+||+++|++|+|||||+++|++. ......+.+++|....... .+..+.+|||||.... ....+......
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~ 76 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDH 76 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHH
Confidence 479999999999999999999986 3344444444444333222 1237899999994210 01111345566
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHH-HHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDC-ANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
+++. +|++|+|+|++++.+..+... ..++.. .++|+++|+||+|+...+.+........+..+.+...++.
T Consensus 77 ~~~~---ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 77 IFQM---VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp HHTT---CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred Hhcc---CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 6666 899999999999877655422 233332 4799999999999976322110000111223333333332
Q ss_pred -CCCeEEeecCCCCChHHHHHHHHH
Q 027757 189 -HPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 189 -~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
.++++++||++ .|+.+++..+.+
T Consensus 154 ~~~~~~~tSa~~-~~i~e~~~~iv~ 177 (307)
T 3r7w_A 154 PNLIGFPTSIWD-ESLYKAWSQIVC 177 (307)
T ss_dssp CSCEEEECCTTS-SHHHHHHHHHHH
T ss_pred CCeEEEEeeecC-ChHHHHHHHHHH
Confidence 37899999999 788888877654
No 131
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.86 E-value=8.5e-21 Score=150.43 Aligned_cols=161 Identities=22% Similarity=0.237 Sum_probs=110.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF 116 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~ 116 (219)
.+|+|+|++|+|||||+|+|++.. ....++.+++|+.. ..... +.++.++||||+.. .... ..-..+.....
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~-~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~---~~~~-~l~~~~~~~~~ 83 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM---EEKR-AINRLMNKAAS 83 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCS-EEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH---HHHH-HHHHHHTCCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCc---cchh-hHHHHHHHHHH
Confidence 479999999999999999999974 45556666666532 22222 33789999999741 0000 00001111223
Q ss_pred hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
...+.+|++++|+|+++ .+..+..+.+.+...+.|+++++||+|+... ...+.+..+.+...++. .+++++|
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~------~~~~~~~l~~l~~~~~~-~~~i~iS 155 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE------KADLLPHLQFLASQMNF-LDIVPIS 155 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC------HHHHHHHHHHHHTTSCC-SEEEECC
T ss_pred HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc------HHHHHHHHHHHHHhcCc-CceEEEE
Confidence 34455899999999988 6666666666777778999999999998752 13344555555544332 3689999
Q ss_pred cCCCCChHHHHHHHHHH
Q 027757 197 SVTGLGRDELLLHMSQL 213 (219)
Q Consensus 197 a~~~~~v~el~~~l~~~ 213 (219)
|+++.|++++++++.+.
T Consensus 156 A~~g~~v~~l~~~i~~~ 172 (301)
T 1ega_A 156 AETGLNVDTIAAIVRKH 172 (301)
T ss_dssp TTTTTTHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999998764
No 132
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=2.3e-21 Score=163.81 Aligned_cols=158 Identities=13% Similarity=0.106 Sum_probs=106.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
...++|+|+|.+|+|||||+|+|++.. .....++.+.+.. .+. .+..+.++||||.. .|..++..+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~-~~~~~~T~~~~~~--~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~ 386 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVE--TVTYKNVKFNVWDVGGQD----------KIRPLWRHY 386 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSS-CCCCCCCSSEEEE--EEESSSCEEEEEEECCCG----------GGSGGGGGG
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCC-CCCcCCccceeEE--EEEeCCEEEEEEECCCcH----------HHHHHHHHH
Confidence 345899999999999999999999975 3333444443332 222 23479999999942 223344566
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH--HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PH 188 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 188 (219)
++. +|++|+|+|++++.+..... +...+. ..++|+++|+||+|+.... ..+++...+.... ..
T Consensus 387 ~~~---ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~-------~~~~~~~~~~~~~~~~~ 456 (497)
T 3lvq_E 387 YTG---TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-------KPHEIQEKLGLTRIRDR 456 (497)
T ss_dssp GTT---CCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC-------CHHHHHHHTTCTTCCSS
T ss_pred hcc---CCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC-------CHHHHHHHhchhhhhcC
Confidence 666 89999999999876654421 112222 1579999999999987531 2233333332211 12
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
..+++++||++|.|+++++++|.+.++.+
T Consensus 457 ~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 457 NWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34699999999999999999999887654
No 133
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.85 E-value=5e-21 Score=148.43 Aligned_cols=171 Identities=20% Similarity=0.191 Sum_probs=101.4
Q ss_pred CCCCCeEEEEcCC---------CCCHHHHHHHHhcCcccccccCCCCee--EE-----ee--------------EEEecC
Q 027757 36 KDDRPEFAILGRS---------NVGKSSLINALVRKKELALTSKKPGKT--QL-----IN--------------HFLVNK 85 (219)
Q Consensus 36 ~~~~~~v~i~G~~---------g~GKSslin~l~~~~~~~~~~~~~~~t--~~-----~~--------------~~~~~~ 85 (219)
....+||+++|.+ |+|||||+++|++..+.........++ .+ +. ......
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 3556899999999 999999999999842111111111111 00 00 000112
Q ss_pred eEEEEe------CCCCCCCCCC-------cchhhhHHHHHHHHhhcc------------------CCccEEEEEEeCCCC
Q 027757 86 SWYIVD------LPGYGFAKAP-------DVTRMDWSSFTKGYFLNR------------------ESLVGVLLLIDASVP 134 (219)
Q Consensus 86 ~~~liD------tpg~~~~~~~-------~~~~~~~~~~~~~~~~~~------------------~~~d~vi~v~d~~~~ 134 (219)
.+.+|| |||....... ..+++.|..+...+++.. ..+|++|+|+|++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 455665 7776533221 445555555555555510 027999999999987
Q ss_pred --CCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHH
Q 027757 135 --PQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207 (219)
Q Consensus 135 --~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~ 207 (219)
.+..... .+..+ ...++|+++|+||+|+.... .+++..+..... ..++++++||+++.|+++++
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-------~v~~~~~~~~~~--~~~~~~e~SAk~g~gv~elf 246 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER-------YIRDAHTFALSK--KNLQVVETSARSNVNVDLAF 246 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH-------HHHHHHHHHHTS--SSCCEEECBTTTTBSHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH-------HHHHHHHHHHhc--CCCeEEEEECCCCCCHHHHH
Confidence 6654431 11111 22579999999999986532 222222222211 13689999999999999999
Q ss_pred HHHHHHHh
Q 027757 208 LHMSQLRN 215 (219)
Q Consensus 208 ~~l~~~~~ 215 (219)
++|.+.+.
T Consensus 247 ~~l~~~l~ 254 (255)
T 3c5h_A 247 STLVQLID 254 (255)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99988664
No 134
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.85 E-value=2.3e-20 Score=153.72 Aligned_cols=162 Identities=15% Similarity=0.147 Sum_probs=104.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeE---------------------Eee-EEEecCeEEEEeCC
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ---------------------LIN-HFLVNKSWYIVDLP 93 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~---------------------~~~-~~~~~~~~~liDtp 93 (219)
....++|+++|.+|+|||||+|+|++.. ..........+. ... .......+.++|||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3557899999999999999999999842 111000000000 000 00112478999999
Q ss_pred CCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccCC-CcEEEEEEcccccccccCCCc
Q 027757 94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRNN-IPLTFVFTKCDKMKVAKGRRP 171 (219)
Q Consensus 94 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~~~~~~~~ 171 (219)
|+ +.|......++.. +|++|+|+|++++. ..+..+.+..+...+ .|+++|+||+|+.+.+..
T Consensus 84 Gh----------~~~~~~~~~~~~~---~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~--- 147 (403)
T 3sjy_A 84 GH----------EVLMATMLSGAAL---MDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEA--- 147 (403)
T ss_dssp CC----------GGGHHHHHHHHTT---CSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH---
T ss_pred Cc----------HHHHHHHHHHHhh---CCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHH---
Confidence 95 2334444455554 89999999999976 444444455444433 589999999999864211
Q ss_pred hHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 172 DENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.+..+++.+.+.......++++++||++|.|+++++++|.+.+
T Consensus 148 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 148 LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 1222333333333334467999999999999999999998754
No 135
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.85 E-value=1.3e-19 Score=146.93 Aligned_cols=164 Identities=22% Similarity=0.232 Sum_probs=104.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+|+|++.. ......+++|..... ... +..+.++||||+...............+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~- 241 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAIL- 241 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHH-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHH-
Confidence 457899999999999999999999974 333344444443322 222 23689999999754322111111111121
Q ss_pred HHhhccCCccEEEEEEeCCCCC--Cccc-HHHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPP--QKID-LDCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~--~~~~-~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (219)
.+.. .+|++++|+|++++. +... ...+..+.. .+.|+++|+||+|+.... .+++..+.+.. .
T Consensus 242 ~~~~---~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~-------~~~~~~~~~~~---~ 308 (357)
T 2e87_A 242 ALRY---LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEE-------NIKRLEKFVKE---K 308 (357)
T ss_dssp GGGG---TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHH-------HHHHHHHHHHH---T
T ss_pred HHHh---cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChH-------HHHHHHHHHHh---c
Confidence 2222 379999999998765 2222 122222222 289999999999997642 22333332222 2
Q ss_pred CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 189 HPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.++++++||++|.|++++++++.+.+..
T Consensus 309 ~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 309 GLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 2689999999999999999999887654
No 136
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=4.5e-20 Score=152.18 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=102.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccccc--ccCCCCeeEEeeE----E---------E-------------ecCeEE
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELAL--TSKKPGKTQLINH----F---------L-------------VNKSWY 88 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~--~~~~~~~t~~~~~----~---------~-------------~~~~~~ 88 (219)
...++|+++|..++|||||+++|++.. ... .....+.|....+ . . ....+.
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~-~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVW-TDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCC-CCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc-cccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 456899999999999999999999752 211 1112222322111 0 0 014689
Q ss_pred EEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccCC-CcEEEEEEcccccccc
Q 027757 89 IVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRNN-IPLTFVFTKCDKMKVA 166 (219)
Q Consensus 89 liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~~~ 166 (219)
+|||||+ +.+...+++....+|++|+|+|++++. ..+..+.+..+...+ .|+++++||+|+.+.+
T Consensus 85 iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 85 FVDSPGH-------------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp EEECSSH-------------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred EEECCCH-------------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 9999994 344566677777789999999999875 444455454444444 4799999999998653
Q ss_pred cCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 167 KGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
... +..++..+.+........+++++||++|.|+++|+++|.+.+
T Consensus 152 ~~~---~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 152 QAE---ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp TTT---THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHH---HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 221 233444444443334457999999999999999999998754
No 137
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.85 E-value=1.1e-20 Score=149.56 Aligned_cols=170 Identities=18% Similarity=0.167 Sum_probs=110.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccc----cccCCCC----------------------eeEE------------
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELA----LTSKKPG----------------------KTQL------------ 77 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~----~~~~~~~----------------------~t~~------------ 77 (219)
....++|+|+|.+|+|||||+|+|++..+.+ ..++.++ ++.+
T Consensus 23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~ 102 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 102 (299)
T ss_dssp TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999999985432 2222232 1111
Q ss_pred ------------ee-EEEe--cCeEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEE-EEEeCCCCCCcc
Q 027757 78 ------------IN-HFLV--NKSWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVL-LLIDASVPPQKI 138 (219)
Q Consensus 78 ------------~~-~~~~--~~~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi-~v~d~~~~~~~~ 138 (219)
.. .... ...+.+|||||+..... .......+..+...|++. ++.+| +|+|+++..+..
T Consensus 103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~il~v~d~~~~~~~~ 179 (299)
T 2aka_B 103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK---ENCLILAVSPANSDLANS 179 (299)
T ss_dssp HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS---TTEEEEEEEESSSCGGGC
T ss_pred hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC---CCeEEEEEecCCcchhhh
Confidence 00 0001 25799999999764221 122223567777788876 56555 799999876665
Q ss_pred cH-HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC-CCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 139 DL-DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP-HHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 139 ~~-~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+. .+.+++...+.|+++|+||+|+.+... . ..+..+....... ...+++++||+++.|++++++++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~--~----~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 180 DALKIAKEVDPQGQRTIGVITKLDLMDEGT--D----ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHHHHHCTTCSSEEEEEECGGGSCTTC--C----CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEEEEccccCCCCc--h----HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 53 467777778899999999999976421 1 1111111000111 124688999999999999999987743
No 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.84 E-value=9e-21 Score=157.90 Aligned_cols=157 Identities=24% Similarity=0.237 Sum_probs=103.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHH-HHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSF-TKG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~-~~~ 114 (219)
.++|+|+|++|+|||||+|+|++. ........+++|.+.. .... +..+.+|||||+..... .++.+ ...
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~------~ve~~gi~~ 296 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD------QVEKIGVER 296 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC------------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh------HHHHHHHHH
Confidence 468999999999999999999996 4555666777776532 2233 34789999999743211 00111 111
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
.....+.+|++++|+|++++.+..+..+...+. +.|+++|+||+|+....... .+ ..+....++++
T Consensus 297 ~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~-----------~~-~~~~~~~~~i~ 362 (462)
T 3geh_A 297 SRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT-----------SL-EYPENITQIVH 362 (462)
T ss_dssp --CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST-----------TC-CCCTTCCCEEE
T ss_pred HhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH-----------HH-HHhccCCcEEE
Confidence 222344589999999999988877666666555 47999999999997653221 00 01113368999
Q ss_pred eecCCCCChHHHHHHHHHHHhh
Q 027757 195 TSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+||++|.|+++++++|.+.+..
T Consensus 363 iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 363 TAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp EBTTTTBSHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999987654
No 139
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.84 E-value=6e-21 Score=147.30 Aligned_cols=172 Identities=12% Similarity=0.038 Sum_probs=105.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...++|+++|.+|+|||||+|+|++...........++|... .... .+..+.++||||+..... ..++..+..+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~-~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQV-SKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTH-HHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCC-CcHHHHHHHHHH
Confidence 446899999999999999999999975332222222344332 2222 244799999999853211 111333445555
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHH----HHHHHHH
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIK----SFQQLIR 183 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~----~~~~~~~ 183 (219)
.++...+.+|++|+|+|+++ .+..+...++++.. .+.|+++++||+|+.... ..+.+. +..+.+.
T Consensus 98 ~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~----~~~~l~~~~~~~l~~l~ 172 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGS----LHDYVSNTENRALRELV 172 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC----HHHHHHHCCCHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCC----HHHHHhhcccHHHHHHH
Confidence 55555566999999999986 44455555666654 278999999999986531 111111 1122222
Q ss_pred hcCCCCCCeEEeecCC-----CCChHHHHHHHHHHHhh
Q 027757 184 ENYPHHPPWIMTSSVT-----GLGRDELLLHMSQLRNY 216 (219)
Q Consensus 184 ~~~~~~~~~~~~Sa~~-----~~~v~el~~~l~~~~~~ 216 (219)
..++ .++..++++. +.|+++|++.|.+.+..
T Consensus 173 ~~~g--~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 173 AECG--GRVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHTT--TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcC--CeEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 2233 3566676655 57999999999887764
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.84 E-value=1.2e-20 Score=158.40 Aligned_cols=163 Identities=23% Similarity=0.250 Sum_probs=106.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccc-----ccccCCCCeeEEee--EEEec-CeEEEEeCCCCCCCCCCcchhhhH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKEL-----ALTSKKPGKTQLIN--HFLVN-KSWYIVDLPGYGFAKAPDVTRMDW 108 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~-----~~~~~~~~~t~~~~--~~~~~-~~~~liDtpg~~~~~~~~~~~~~~ 108 (219)
...++|+++|.+++|||||+++|++.... .......++|.+.. ....+ ..+.++||||+ +.|
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh----------~~~ 86 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH----------ADL 86 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH----------HHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh----------HHH
Confidence 34689999999999999999999986411 12223334444332 22223 47999999995 223
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc-CC
Q 027757 109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN-YP 187 (219)
Q Consensus 109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~ 187 (219)
...... ....+|++|+|+|++++...+..+.+..+...++|.++|+||+|+.+.+.. ....+++.+.+... ..
T Consensus 87 ~~~~~~---~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~---~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 87 IRAVVS---AADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEI---KRTEMIMKSILQSTHNL 160 (482)
T ss_dssp HHHHHH---HTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHH---HHHHHHHHHHHHHSSSG
T ss_pred HHHHHH---HHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhH---HHHHHHHHHHHhhhccc
Confidence 333333 444499999999999987777777777777788999999999999863211 11122222223222 11
Q ss_pred CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 188 HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
...+++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 2478999999999999999999988653
No 141
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=143.68 Aligned_cols=175 Identities=14% Similarity=0.187 Sum_probs=100.7
Q ss_pred CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEEe-cCeEEEEeCCCCCCCCCCcchhhhHH
Q 027757 33 DCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWS 109 (219)
Q Consensus 33 ~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~ 109 (219)
+.+....++|+|+|.+|+|||||+|+|++........+..+++... ..... +..+.+|||||+....... ....+
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~--~~~~~ 100 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN--AETSK 100 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----C--HHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCH--HHHHH
Confidence 4445667899999999999999999999975433222222334332 22223 3479999999986443221 22233
Q ss_pred HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCch----HhHHHHHH
Q 027757 110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPD----ENIKSFQQ 180 (219)
Q Consensus 110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~----~~~~~~~~ 180 (219)
.+...+....+.+|++|+|+|+++... .+...+.++. ....|+++|+||+|+......+... +.++++.+
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 444555444455899999999986444 3344444443 2346999999999987653322111 22344444
Q ss_pred HHHhcCCCCCCeEEeecCCC-----CChHHHHHHHHHHHhh
Q 027757 181 LIRENYPHHPPWIMTSSVTG-----LGRDELLLHMSQLRNY 216 (219)
Q Consensus 181 ~~~~~~~~~~~~~~~Sa~~~-----~~v~el~~~l~~~~~~ 216 (219)
.++ .+++.+++..+ .++.++++.+.+.++.
T Consensus 180 ~~~------~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFG------DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHS------SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcC------CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 333 36777777654 6899999988876643
No 142
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.84 E-value=8.5e-21 Score=147.49 Aligned_cols=173 Identities=16% Similarity=0.062 Sum_probs=103.3
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC-eeEEe--eEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPG-KTQLI--NHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSF 111 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~-~t~~~--~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~ 111 (219)
....++|+|+|.+|+|||||+|+|++.. .......+. +|... .... .+..+.+|||||+....... ......+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~--~~~~~~i 95 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQ-AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC--EALYKEV 95 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSC-CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC--HHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH--HHHHHHH
Confidence 3456899999999999999999999874 222221121 33322 2222 34479999999976432211 1111222
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccC-----CCcEEEEEE-cccccccccCCCch-------HhHHHH
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN-----NIPLTFVFT-KCDKMKVAKGRRPD-------ENIKSF 178 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~n-K~D~~~~~~~~~~~-------~~~~~~ 178 (219)
........+.+|++|+|+|+++ ....+.....++.+. ..|.++|+| |+|+.... ... ..+..+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~---~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS---LMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC---HHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc---HHHHHHhcchHHHHHH
Confidence 3332223344899999999986 344444455555543 568888888 99997421 000 112223
Q ss_pred HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+.+...+.. ...+++||+++.|+++++++|.+.+..
T Consensus 172 ~~~~~~~~~~-~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 172 VAACGGRICA-FNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHTTTCEEE-CCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCeEEE-ecCcccccccHHHHHHHHHHHHHHHHh
Confidence 3333321110 111789999999999999999987754
No 143
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.84 E-value=5.3e-20 Score=137.35 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=105.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
.++|+++|++|+|||||+++|++..+.....++.+.......+..++ .+.++||||... +..+...+
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~----------~~~~~~~~ 74 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER----------YRRITSAY 74 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG----------TTCCCHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHH
Confidence 57999999999999999999999865555556655555544555544 467899999432 12223445
Q ss_pred hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
+.. +|++++|+|+.+..+..... ....+. ..+.|+++|+||+|+.... .+.......+.... .+.
T Consensus 75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~--~~~~~~a~~l~~~~------~~~ 143 (199)
T 2f9l_A 75 YRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--AVPTDEARAFAEKN------NLS 143 (199)
T ss_dssp HTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--CSCHHHHHHHHHHT------TCE
T ss_pred Hhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc--CcCHHHHHHHHHHc------CCe
Confidence 555 79999999999865544321 112121 2578999999999997542 22223333333321 257
Q ss_pred eEEeecCCCCChHHHHHHHHHHHh
Q 027757 192 WIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++++|++++.|+++++++|.+.+.
T Consensus 144 ~~d~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 144 FIETSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999988664
No 144
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.84 E-value=3.2e-20 Score=153.16 Aligned_cols=162 Identities=18% Similarity=0.223 Sum_probs=105.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-cccccCCCCeeEEee----EEE----------------------ecCeEEE
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKE-LALTSKKPGKTQLIN----HFL----------------------VNKSWYI 89 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~----~~~----------------------~~~~~~l 89 (219)
...++|+++|..++|||||+++|++... ........+.|.... .+. ....+.+
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 4467999999999999999999997521 111111222222111 110 0146899
Q ss_pred EeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccCC-CcEEEEEEccccccccc
Q 027757 90 VDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRNN-IPLTFVFTKCDKMKVAK 167 (219)
Q Consensus 90 iDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~~~~ 167 (219)
|||||+ +.+...+++....+|++|+|+|++++. ..+..+.+..+...+ .|+++|+||+|+.+.+.
T Consensus 88 iDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~ 154 (410)
T 1kk1_A 88 IDAPGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK 154 (410)
T ss_dssp EECSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred EECCCh-------------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH
Confidence 999995 234456666666689999999999875 444455444444333 57999999999976421
Q ss_pred CCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 168 GRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
. .+..+++.+.+........+++++||+++.|+++|+++|.+.+
T Consensus 155 ~---~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 155 A---LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp H---HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred H---HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 0 1223333333333333457999999999999999999998754
No 145
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.83 E-value=9.9e-20 Score=151.25 Aligned_cols=157 Identities=17% Similarity=0.172 Sum_probs=101.0
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-----------------------------cccccCCCCeeEEeeEEE---e
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKE-----------------------------LALTSKKPGKTQLINHFL---V 83 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~-----------------------------~~~~~~~~~~t~~~~~~~---~ 83 (219)
....++|+++|.+++|||||+++|++..- ........+.|.+..... .
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 34568999999999999999999965410 001112245555543332 2
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC-------cccHHHHHHhccCCCc-EEE
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ-------KIDLDCANWLGRNNIP-LTF 155 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ii 155 (219)
+..+.++||||+. .|......++.. +|++|+|+|++++.. .+..+.+..+...++| +++
T Consensus 94 ~~~~~iiDTPGh~----------~f~~~~~~~~~~---aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIv 160 (439)
T 3j2k_7 94 KKHFTILDAPGHK----------SFVPNMIGGASQ---ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV 160 (439)
T ss_pred CeEEEEEECCChH----------HHHHHHHhhHhh---CCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEE
Confidence 3479999999952 233444444444 899999999998754 3455666666667788 999
Q ss_pred EEEcccccccccCCCchHhHHHHHHHHHh---cCC----CCCCeEEeecCCCCChHHHHH
Q 027757 156 VFTKCDKMKVAKGRRPDENIKSFQQLIRE---NYP----HHPPWIMTSSVTGLGRDELLL 208 (219)
Q Consensus 156 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~Sa~~~~~v~el~~ 208 (219)
|+||+|+...+. .....++..+.+.. .++ ..++++++||++|.|++++.+
T Consensus 161 viNK~Dl~~~~~---~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 161 LINKMDDPTVNW---SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EeecCCCcccch---HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 999999864211 01122222222211 111 246899999999999999554
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.82 E-value=9.5e-22 Score=165.86 Aligned_cols=161 Identities=21% Similarity=0.328 Sum_probs=112.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE----ecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL----VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
..++|+++|.+|+|||||+++|.+..+... ..+++|.+...+. .+..+.+|||||+..... +..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~----------~~~ 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA----------MRA 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT----------SBB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH----------HHH
Confidence 368999999999999999999998743322 3445555443322 233789999999643211 111
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeE
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI 193 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (219)
. ....+|++|+|+|++++...+..+.+..+...++|+++|+||+|+.+...... ...+... ......++..++++
T Consensus 71 ~---~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v-~~~l~~~-~~~~e~~~~~~~iv 145 (537)
T 3izy_P 71 R---GTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKV-KKELLAY-DVVCEDYGGDVQAV 145 (537)
T ss_dssp S---SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSS-SSHHHHT-TSCCCCSSSSEEEC
T ss_pred H---HHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHH-HHHHHhh-hhhHHhcCCCceEE
Confidence 2 23348999999999999888888888888888999999999999975432211 1222111 00111223346899
Q ss_pred EeecCCCCChHHHHHHHHHHHh
Q 027757 194 MTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 194 ~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
++||++|.|++++++++...+.
T Consensus 146 ~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 146 HVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCCSSSSCSSHHHHHHHHHHHT
T ss_pred EEECCCCCCchhHHHHHHHhhh
Confidence 9999999999999999988764
No 147
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.81 E-value=1.4e-20 Score=160.33 Aligned_cols=158 Identities=15% Similarity=0.138 Sum_probs=95.7
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee------EE--Ee---cCeEEEEeCCCCCCCCCCcch
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN------HF--LV---NKSWYIVDLPGYGFAKAPDVT 104 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~------~~--~~---~~~~~liDtpg~~~~~~~~~~ 104 (219)
....+||+++|.+|+|||||+|+|++..+.....++.+.+.... .+ .. ...+.++||||...
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~------- 110 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI------- 110 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT-------
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHH-------
Confidence 35578999999999999999999999865555555555433211 01 11 34799999999432
Q ss_pred hhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHH
Q 027757 105 RMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI 182 (219)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~ 182 (219)
+..+...+++. +|++|+|+|+++.... ......+.. .+.|+++|+||+|+.... .+..+..++....+
T Consensus 111 ---~~~~~~~~l~~---~d~ii~V~D~s~~~~~--~~~~~~l~~~~~~~pvilV~NK~Dl~~~~--~v~~~~~~~~~~~~ 180 (535)
T 3dpu_A 111 ---MHASHQFFMTR---SSVYMLLLDSRTDSNK--HYWLRHIEKYGGKSPVIVVMNKIDENPSY--NIEQKKINERFPAI 180 (535)
T ss_dssp ---TTTTCHHHHHS---SEEEEEEECGGGGGGH--HHHHHHHHHHSSSCCEEEEECCTTTCTTC--CCCHHHHHHHCGGG
T ss_pred ---HHHHHHHHccC---CcEEEEEEeCCCchhH--HHHHHHHHHhCCCCCEEEEEECCCccccc--ccCHHHHHHHHHhc
Confidence 22334556666 8999999999865221 233333333 469999999999997542 22223333322221
Q ss_pred HhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
..+++++||++|.|++++++++.+.+..
T Consensus 181 ------~~~~~~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 181 ------ENRFHRISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp ------TTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred ------CCceEEEecCcccCHHHHHHHHHHHHhc
Confidence 2579999999999999999999887654
No 148
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.81 E-value=3.5e-19 Score=132.16 Aligned_cols=156 Identities=20% Similarity=0.219 Sum_probs=106.6
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+|+|++|||||||+++|++..+.....++.+..........++ .+.++|++|.... ..+...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~----------~~~~~~ 97 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY----------RAITSA 97 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSS----------SCCCHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcch----------hhhhHH
Confidence 357999999999999999999999865556666666655555555554 3557999996422 112244
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP 190 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (219)
+++. ++++++|+|..+..+..... ....+ ...+.|+++++||+|+.... .+.......+.... .+
T Consensus 98 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~--~~~~~~a~~l~~~~------~~ 166 (191)
T 1oix_A 98 YYRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--AVPTDEARAFAEKN------GL 166 (191)
T ss_dssp HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--CSCHHHHHHHHHHT------TC
T ss_pred Hhhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc--ccCHHHHHHHHHHc------CC
Confidence 5555 78999999998765543322 11212 23578999999999997542 22233333333321 25
Q ss_pred CeEEeecCCCCChHHHHHHHHHHH
Q 027757 191 PWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 191 ~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
.++++|++++.|+++++++|.+.+
T Consensus 167 ~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 167 SFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 789999999999999999998753
No 149
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.81 E-value=9.9e-19 Score=141.71 Aligned_cols=168 Identities=18% Similarity=0.151 Sum_probs=99.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
...+.|+|+|++|+|||||+|+|++.. ....+.+++|.+. .....+ ..+.++||||+... .+....+.|.....
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~-lp~~lve~f~~tl~ 253 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG-IPPQIVDAFFVTLS 253 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSS-CCGGGHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhc-CCHHHHHHHHHHHH
Confidence 345569999999999999999999974 2344445555433 233333 46889999996422 11222233444433
Q ss_pred HHhhccCCccEEEEEEeCCCCC--CcccH----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC-
Q 027757 114 GYFLNRESLVGVLLLIDASVPP--QKIDL----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY- 186 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~--~~~~~----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~- 186 (219)
.+.. +|++++|+|++++. ..... +.+..+...+.|+++|+||+|+.... ..........+...+
T Consensus 254 -~~~~---aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-----~~~~~~~~~~l~~~l~ 324 (364)
T 2qtf_A 254 -EAKY---SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD-----LYKKLDLVEKLSKELY 324 (364)
T ss_dssp -GGGG---SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC-----HHHHHHHHHHHHHHHC
T ss_pred -HHHh---CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch-----HHHHHHHHHHHHHHhc
Confidence 2333 89999999998764 22111 22333333678999999999987532 111111111111111
Q ss_pred CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 187 PHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
...++++++||+++.|+++++++|.+.+..
T Consensus 325 ~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 325 SPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp SCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 122468999999999999999999887654
No 150
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.81 E-value=4e-19 Score=151.93 Aligned_cols=156 Identities=19% Similarity=0.195 Sum_probs=100.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc-c------ccc------cCCCCeeEEeeEE---Ee-----cCeEEEEeCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKE-L------ALT------SKKPGKTQLINHF---LV-----NKSWYIVDLPGYG 96 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~-~------~~~------~~~~~~t~~~~~~---~~-----~~~~~liDtpg~~ 96 (219)
...+|+|+|..++|||||+++|+.... . ..+ ....+.|...... +. ...+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 356899999999999999999986310 0 001 1123333322111 11 2368899999963
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHH
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIK 176 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~ 176 (219)
.|......+++. +|++|+|+|++++.+.+....+..+...++|+++|+||+|+.... .+
T Consensus 83 ----------dF~~ev~~~l~~---aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~--------~~ 141 (599)
T 3cb4_D 83 ----------DFSYEVSRSLAA---CEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD--------PE 141 (599)
T ss_dssp ----------GGHHHHHHHHHH---CSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC--------HH
T ss_pred ----------HHHHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc--------HH
Confidence 233445556666 899999999999888877776766667899999999999997531 22
Q ss_pred HHHHHHHhcCCC-CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 177 SFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 177 ~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
+..+.+...++. ..+++++||++|.|++++++++.+.+
T Consensus 142 ~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 142 RVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp HHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcC
Confidence 223333333332 23689999999999999999998764
No 151
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.81 E-value=3.5e-19 Score=152.38 Aligned_cols=163 Identities=20% Similarity=0.231 Sum_probs=106.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-------------c--------CeEEEEeCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-------------N--------KSWYIVDLPGYG 96 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-------------~--------~~~~liDtpg~~ 96 (219)
..++|+|+|.+++|||||+++|++.. .....+ .+.|.++..... . ..+.+|||||+.
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~-v~~~e~-ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSA-VASREA-GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHH-HSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc-CccccC-CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 36899999999999999999999863 221111 122222111111 0 148999999975
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCC-------
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGR------- 169 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~------- 169 (219)
...... . +....+|++|+|+|++++...+..+.+.++...++|+++++||+|+.......
T Consensus 82 ~F~~~~----------~---r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e 148 (594)
T 1g7s_A 82 AFTTLR----------K---RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFME 148 (594)
T ss_dssp CCTTSB----------C---SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred HHHHHH----------H---HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHH
Confidence 332111 1 22344899999999999877777778888888899999999999997421110
Q ss_pred ----Cch---Hh----HHHHHHHHHhcC------------CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 170 ----RPD---EN----IKSFQQLIRENY------------PHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 170 ----~~~---~~----~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
... +. +.+....+...+ ....+++++||++|.|+++++++|.....
T Consensus 149 ~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 000 11 112222332211 23358999999999999999999988664
No 152
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.80 E-value=8.3e-19 Score=153.00 Aligned_cols=168 Identities=19% Similarity=0.267 Sum_probs=109.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCe--------------eEEe------eE----------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGK--------------TQLI------NH---------------- 80 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~--------------t~~~------~~---------------- 80 (219)
...++|+|+|.+|+|||||+|+|++.. ....+..+++ +... ..
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~-~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGEN-LLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSS-CSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 346899999999999999999999974 4444444443 1110 00
Q ss_pred -------------------EEe-----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC
Q 027757 81 -------------------FLV-----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ 136 (219)
Q Consensus 81 -------------------~~~-----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~ 136 (219)
... ...+.+|||||+.... ........++.. +|++|+|+|++++.+
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-------~~~~~~~~~i~~---aD~vL~Vvda~~~~s 215 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-------ARNELSLGYVNN---CHAILFVMRASQPCT 215 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-------TCHHHHTHHHHS---SSEEEEEEETTSTTC
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh-------hHHHHHHHHHHh---CCEEEEEEeCCCccc
Confidence 000 0468999999975211 113445566666 899999999999887
Q ss_pred cccHHHHH-HhccCCCcEEEEEEcccccccccCCC-chHhHHH----H----HHHHHhcCC------CCCCeEEeecC--
Q 027757 137 KIDLDCAN-WLGRNNIPLTFVFTKCDKMKVAKGRR-PDENIKS----F----QQLIRENYP------HHPPWIMTSSV-- 198 (219)
Q Consensus 137 ~~~~~~~~-~~~~~~~p~iiv~nK~D~~~~~~~~~-~~~~~~~----~----~~~~~~~~~------~~~~~~~~Sa~-- 198 (219)
..+...+. .+...+.|+++|+||+|+........ ..+..++ . ...+....+ ...+++++||+
T Consensus 216 ~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~a 295 (695)
T 2j69_A 216 LGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQA 295 (695)
T ss_dssp HHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHH
T ss_pred hhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHH
Confidence 76665553 45556789999999999875431110 0011111 1 122222211 23579999999
Q ss_pred ------------CCCChHHHHHHHHHHHh
Q 027757 199 ------------TGLGRDELLLHMSQLRN 215 (219)
Q Consensus 199 ------------~~~~v~el~~~l~~~~~ 215 (219)
++.|+++++++|.+.+.
T Consensus 296 l~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 296 LRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 99999999999987654
No 153
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.80 E-value=4.4e-19 Score=141.41 Aligned_cols=168 Identities=18% Similarity=0.196 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccc----cccCCCC---eeEEe-------------------------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELA----LTSKKPG---KTQLI------------------------------- 78 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~----~~~~~~~---~t~~~------------------------------- 78 (219)
...++|+|+|.+|+|||||+|+|++..+.+ ..+..++ ++...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 456899999999999999999999985422 1223331 11110
Q ss_pred ----------------------eEEE-ecCeEEEEeCCCCCCCC---CCcchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757 79 ----------------------NHFL-VNKSWYIVDLPGYGFAK---APDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS 132 (219)
Q Consensus 79 ----------------------~~~~-~~~~~~liDtpg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~ 132 (219)
.... ....+.++||||+.... ........+......++.. +|++++|+|++
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~iilvvd~~ 178 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTPA 178 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEES
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcC---CCeEEEEEEec
Confidence 0011 12479999999985311 1112234456666777776 89999999974
Q ss_pred -CCCCccc-HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec---CC---CCChH
Q 027757 133 -VPPQKID-LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS---VT---GLGRD 204 (219)
Q Consensus 133 -~~~~~~~-~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~~v~ 204 (219)
......+ ..+..++...+.|+++|+||+|+..... ...+..+ .........++++|+ .+ +.|+.
T Consensus 179 ~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~------~~~~~~~--~~~~~~~~~~~~v~~~sa~~~~~~~gv~ 250 (315)
T 1jwy_B 179 NTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT------DAMEVLT--GRVIPLTLGFIGVINRSQEDIIAKKSIR 250 (315)
T ss_dssp SSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC------CCHHHHT--TSSSCCTTCEEECCCCCHHHHSSSCCHH
T ss_pred CcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch------HHHHHHh--CCCccCCCCeEEEecCChhhhccCCCHH
Confidence 4433333 4677888888999999999999976431 1111111 111111134555554 44 78899
Q ss_pred HHHHHHHHHHh
Q 027757 205 ELLLHMSQLRN 215 (219)
Q Consensus 205 el~~~l~~~~~ 215 (219)
++++.+.+.+.
T Consensus 251 ~l~~~~~~~~~ 261 (315)
T 1jwy_B 251 ESLKSEILYFK 261 (315)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998877654
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.80 E-value=4.9e-19 Score=149.76 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=80.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc-----------------ccc---ccCCCCeeEE---eeEEEecCeEEEEeCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKE-----------------LAL---TSKKPGKTQL---INHFLVNKSWYIVDLPG 94 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~-----------------~~~---~~~~~~~t~~---~~~~~~~~~~~liDtpg 94 (219)
...+|+|+|.+|+|||||+|+|+...- ... .....+.+.. ......+..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 357899999999999999999972110 000 0001122211 12222345799999999
Q ss_pred CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
+... ......+++. +|++|+|+|++++.+......+..+...++|+++|+||+|+..
T Consensus 92 ~~df----------~~~~~~~l~~---aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 92 HADF----------TEDTYRTLTA---VDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDT 148 (528)
T ss_dssp STTC----------CHHHHHGGGG---CSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred chhH----------HHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 7432 2234455555 8999999999999888888888888888999999999999864
No 155
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.80 E-value=4.9e-19 Score=151.15 Aligned_cols=157 Identities=21% Similarity=0.222 Sum_probs=103.7
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-c------cccc------CCCCeeEEe---eEEEe-----cCeEEEEeCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKE-L------ALTS------KKPGKTQLI---NHFLV-----NKSWYIVDLPGY 95 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-~------~~~~------~~~~~t~~~---~~~~~-----~~~~~liDtpg~ 95 (219)
....+|+|+|..++|||||+++|+.... . .... ...+.|... ...+. ...+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 3457899999999999999999986310 0 0000 112222211 11111 136889999996
Q ss_pred CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhH
Q 027757 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENI 175 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~ 175 (219)
.. |......+++. +|++|+|+|++++.+.+....+..+...++|+++|+||+|+.... .
T Consensus 84 ~d----------F~~ev~r~l~~---aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~--------~ 142 (600)
T 2ywe_A 84 VD----------FSYEVSRALAA---CEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD--------V 142 (600)
T ss_dssp GG----------GHHHHHHHHHT---CSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC--------H
T ss_pred Hh----------HHHHHHHHHHh---CCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC--------H
Confidence 42 23344455555 899999999999988877777766677899999999999997531 2
Q ss_pred HHHHHHHHhcCCC-CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757 176 KSFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQLR 214 (219)
Q Consensus 176 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~el~~~l~~~~ 214 (219)
++..+++...++. ..+++++||++|.|+++++++|.+.+
T Consensus 143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 3334444444332 23589999999999999999998754
No 156
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.80 E-value=8.5e-20 Score=144.58 Aligned_cols=154 Identities=16% Similarity=0.169 Sum_probs=94.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccc----cCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHH---HHH
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALT----SKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSS---FTK 113 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~---~~~ 113 (219)
||+++|.+|+|||||++++.+. +.+.. .++.+.... .+....++.+|||+|-. .|.. ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~-~~~~~~~~~~~Tig~~~~--~v~~~v~LqIWDTAGQE----------rf~~~~l~~~ 67 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN-MQPLDTLYLESTSNPSLE--HFSTLIDLAVMELPGQL----------NYFEPSYDSE 67 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC-CCSGGGTTCCCCCSCCCE--EECSSSCEEEEECCSCS----------SSCCCSHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcC-CCCCccceecCeeeeeeE--EEccEEEEEEEECCCch----------hccchhhhhh
Confidence 6899999999999999998876 44332 233332221 11123478999999843 2221 357
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHH-HHHHHHHhcC
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIK-SFQQLIRENY 186 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~ 186 (219)
.|+++ ++++|+|+|+++. ..... ....++. ..++|+++++||+|+...+.+......+. +..+.+....
T Consensus 68 ~yyr~---a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~ 143 (331)
T 3r7w_B 68 RLFKS---VGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG 143 (331)
T ss_dssp HHHTT---CSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred hhccC---CCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence 88888 8999999999986 32222 1222222 25799999999999976421100001111 1111222211
Q ss_pred --CCCCCeEEeecCCCCChHHHHHHHHH
Q 027757 187 --PHHPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 187 --~~~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
+..++++++||++ .++.+.|..+.+
T Consensus 144 ~~~~~i~f~eTSAkd-~nV~eAFs~iv~ 170 (331)
T 3r7w_B 144 LDGVQVSFYLTSIFD-HSIYEAFSRIVQ 170 (331)
T ss_dssp CSCCCEEEECCCSSS-SHHHHHHHHHHT
T ss_pred ccccCceEEEeccCC-CcHHHHHHHHHH
Confidence 1247899999998 588888887764
No 157
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.79 E-value=8.2e-21 Score=158.94 Aligned_cols=158 Identities=20% Similarity=0.274 Sum_probs=105.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|.+++|||||+++|.+..... ....+.|.+...+. .+..+.+|||||+..... .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~--~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~-------------~ 67 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS--GEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS-------------M 67 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSB--TTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT-------------S
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCcc--ccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH-------------H
Confidence 46899999999999999999999853221 22233443332222 234789999999753211 1
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (219)
..+....+|++|+|+|++++...+..+.+..+...++|+++++||+|+......... ..+.+. ..+...++...++++
T Consensus 68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~-~~l~~~-~~~~~~~~~~~~~v~ 145 (501)
T 1zo1_I 68 RARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVK-NELSQY-GILPEEWGGESQFVH 145 (501)
T ss_dssp BCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTT-CCCCCC-CCCTTCCSSSCEEEE
T ss_pred HHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHH-HHHHHh-hhhHHHhCCCccEEE
Confidence 123344589999999999977777777777777789999999999999753211110 000000 000112233468999
Q ss_pred eecCCCCChHHHHHHHHH
Q 027757 195 TSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 195 ~Sa~~~~~v~el~~~l~~ 212 (219)
+||++|.|++++++++..
T Consensus 146 vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 146 VSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CCTTTCTTCTTHHHHTTT
T ss_pred EeeeeccCcchhhhhhhh
Confidence 999999999999999864
No 158
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.79 E-value=4.7e-19 Score=149.00 Aligned_cols=150 Identities=18% Similarity=0.207 Sum_probs=93.8
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc-----------------------------cccccCCCCeeEEeeEEE---ecC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKE-----------------------------LALTSKKPGKTQLINHFL---VNK 85 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~-----------------------------~~~~~~~~~~t~~~~~~~---~~~ 85 (219)
..++|+++|.+|+|||||+++|++... ........++|.+..... .+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 458999999999999999999986510 011112234444333322 234
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC-------cccHHHHHHhccCC-CcEEEEE
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ-------KIDLDCANWLGRNN-IPLTFVF 157 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~-~p~iiv~ 157 (219)
.+.+|||||+. .|......++.. +|++|+|+|++++.+ .+..+....+...+ .|+++|+
T Consensus 112 ~~~iiDTPG~~----------~f~~~~~~~~~~---aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi 178 (483)
T 3p26_A 112 NFTIVDAPGHR----------DFVPNAIMGISQ---ADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM 178 (483)
T ss_dssp EEEEECCCCCG----------GGHHHHHHHHTT---CSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred eEEEEECCCcH----------HHHHHHHHhhhh---CCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence 79999999962 344555566666 999999999998633 33344555555555 4699999
Q ss_pred EcccccccccCCCchHhHHHHHHHHHhc---CC---CCCCeEEeecCCCCChHH
Q 027757 158 TKCDKMKVAKGRRPDENIKSFQQLIREN---YP---HHPPWIMTSSVTGLGRDE 205 (219)
Q Consensus 158 nK~D~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~Sa~~~~~v~e 205 (219)
||+|+.+.. ....++..+.+... ++ ..++++++||++|.|+++
T Consensus 179 NK~Dl~~~~-----~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 179 NKMDNVDWS-----QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp ECGGGGTTC-----HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred ECcCcccch-----HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 999997521 12222222222111 11 136899999999999985
No 159
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.79 E-value=5.8e-19 Score=145.04 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=104.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc-------ccc-------cccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKK-------ELA-------LTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAP 101 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~-------~~~-------~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~ 101 (219)
.++|+++|.+++|||||+++|++.. +.. ......+.|........ +..+.++||||+.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~----- 77 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA----- 77 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH-----
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH-----
Confidence 4689999999999999999999741 000 00113344544333222 3579999999952
Q ss_pred cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHHHH
Q 027757 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQ 180 (219)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~ 180 (219)
.|...... ....+|++|+|+|++++...+..+.+..+...++| +++++||+|+.+.+.. .+...++..+
T Consensus 78 -----~f~~~~~~---~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~--~~~~~~~~~~ 147 (397)
T 1d2e_A 78 -----DYVKNMIT---GTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEM--VELVELEIRE 147 (397)
T ss_dssp -----HHHHHHHH---TSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHH--HHHHHHHHHH
T ss_pred -----HHHHHHHh---hHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHH--HHHHHHHHHH
Confidence 23333333 34459999999999998777777777777777889 6899999999742100 0011112222
Q ss_pred HHHhcC--CCCCCeEEeecCCCCC----------hHHHHHHHHHHH
Q 027757 181 LIRENY--PHHPPWIMTSSVTGLG----------RDELLLHMSQLR 214 (219)
Q Consensus 181 ~~~~~~--~~~~~~~~~Sa~~~~~----------v~el~~~l~~~~ 214 (219)
.+.... ....+++++||++|.| +++|+++|.+.+
T Consensus 148 ~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 148 LLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 222221 1247899999999764 889999887754
No 160
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.78 E-value=1.3e-18 Score=143.39 Aligned_cols=162 Identities=19% Similarity=0.187 Sum_probs=104.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc--------cccc--cc-----CCCCeeEEeeEEE---ecCeEEEEeCCCCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKK--------ELAL--TS-----KKPGKTQLINHFL---VNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~--------~~~~--~~-----~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~ 99 (219)
..++|+++|.+|+|||||+++|++.. +... .. ...+.|....... .+..+.+|||||+.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~--- 86 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA--- 86 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG---
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH---
Confidence 45799999999999999999999831 1000 00 1223333222222 23579999999964
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHH
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSF 178 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~ 178 (219)
.|......++.. +|++|+|+|++++...+..+.+..+...++| +++++||+|+.+.+.. .+...++.
T Consensus 87 -------~f~~~~~~~~~~---aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~--~~~~~~~~ 154 (405)
T 2c78_A 87 -------DYIKNMITGAAQ---MDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPEL--LDLVEMEV 154 (405)
T ss_dssp -------GGHHHHHHHHTT---CSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHH--HHHHHHHH
T ss_pred -------HHHHHHHHHHHH---CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHH--HHHHHHHH
Confidence 233444445554 8999999999998877777777777777889 8999999999742100 00011122
Q ss_pred HHHHHhcC--CCCCCeEEeecCCCCC------------------hHHHHHHHHHHH
Q 027757 179 QQLIRENY--PHHPPWIMTSSVTGLG------------------RDELLLHMSQLR 214 (219)
Q Consensus 179 ~~~~~~~~--~~~~~~~~~Sa~~~~~------------------v~el~~~l~~~~ 214 (219)
.+.+.... ....+++++||++|.| +++|+++|.+.+
T Consensus 155 ~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 155 RDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp HHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 22222221 1247899999999987 777887776643
No 161
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.78 E-value=8e-19 Score=142.13 Aligned_cols=169 Identities=17% Similarity=0.142 Sum_probs=107.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccccc----ccCCCCe----------------------eEE-------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELAL----TSKKPGK----------------------TQL------------- 77 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~----~~~~~~~----------------------t~~------------- 77 (219)
...++|+|+|.+|+|||||+|+|++..+.+. .+..++. +..
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 3468999999999999999999999754322 2222321 110
Q ss_pred -------------eeEEEe-cCeEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH
Q 027757 78 -------------INHFLV-NKSWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL 140 (219)
Q Consensus 78 -------------~~~~~~-~~~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~ 140 (219)
...... ...+.+|||||+..... .....+.+..+...|+.. ..+++++|+|++......+.
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiL~v~~a~~~~~~~~~ 186 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSDA 186 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS--TTEEEEEEEETTSCGGGCHH
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC--CCeEEEEEecCCCccchhHH
Confidence 000111 24799999999754221 222234667788888764 25677778888765554443
Q ss_pred -HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC-CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 141 -DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP-HHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 141 -~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.+++.+...+.|+++|+||+|+.+.... .....+.....+. ...+++++||+++.|++++++++.+.
T Consensus 187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~------~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 187 LKVAKEVDPQGQRTIGVITKLDLMDEGTD------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp HHHHHHHCTTCTTEEEEEECGGGSCTTCC------CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHhCcCCCceEEEeccccccCcchh------HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 3667777788999999999999764211 1111111000011 11367899999999999999998763
No 162
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.78 E-value=1.5e-18 Score=144.05 Aligned_cols=156 Identities=18% Similarity=0.165 Sum_probs=95.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc--c-------ccccCC----------------------CCeeEEeeEEE---
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKE--L-------ALTSKK----------------------PGKTQLINHFL--- 82 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~--~-------~~~~~~----------------------~~~t~~~~~~~--- 82 (219)
...++|+++|.+++|||||+++|++... . ...+.. .+.|.+.....
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 3457999999999999999999987520 0 000111 12222222111
Q ss_pred ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-cEEEEEEccc
Q 027757 83 VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-PLTFVFTKCD 161 (219)
Q Consensus 83 ~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D 161 (219)
.+..+.+|||||+. .|......++.. +|++|+|+|++++...+..+.+..+...+. |+++|+||+|
T Consensus 102 ~~~~~~iiDtpGh~----------~f~~~~~~~~~~---aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~D 168 (434)
T 1zun_B 102 AKRKFIIADTPGHE----------QYTRNMATGAST---CDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMD 168 (434)
T ss_dssp SSEEEEEEECCCSG----------GGHHHHHHHHTT---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTT
T ss_pred CCceEEEEECCChH----------HHHHHHHHHHhh---CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCc
Confidence 23368999999953 233444455555 899999999999877666665555555666 5999999999
Q ss_pred ccccccCCCchHhHHHHHHHHHhcC--CCCCCeEEeecCCCCChHHH
Q 027757 162 KMKVAKGRRPDENIKSFQQLIRENY--PHHPPWIMTSSVTGLGRDEL 206 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~el 206 (219)
+.+... +......+++.+.+.... ....+++++||++|.|++++
T Consensus 169 l~~~~~-~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 169 LNGFDE-RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp TTTSCH-HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred CCcccH-HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 975310 000011122222222222 23368999999999999873
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.78 E-value=4.5e-18 Score=138.19 Aligned_cols=143 Identities=17% Similarity=0.126 Sum_probs=99.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757 41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL 117 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~ 117 (219)
+|+++|.+++|||||+++|+.+ +.|.+..... .+..+.+|||||+.. |.......++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~----------f~~~~~~~~~ 82 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPK----------TLKSLITALN 82 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTT----------CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHH----------HHHHHHHHHH
Confidence 8999999999999999999822 2222222221 245799999999642 2222233344
Q ss_pred ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcE-EEEEE-cccccccccCCCchHhHHHHHHHHHhcC----CCCCC
Q 027757 118 NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL-TFVFT-KCDKMKVAKGRRPDENIKSFQQLIRENY----PHHPP 191 (219)
Q Consensus 118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 191 (219)
. +|++|+|+| .++...+..+.+..+...++|. ++++| |+|+ +. +..++..+++...+ ....+
T Consensus 83 ~---aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~-------~~~~~~~~~i~~~l~~~~~~~~~ 150 (370)
T 2elf_A 83 I---SDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM-------HAIDELKAKLKVITSGTVLQDWE 150 (370)
T ss_dssp T---CSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH-------HHHHHHHHHHHHHTTTSTTTTCE
T ss_pred H---CCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH-------HHHHHHHHHHHHHHHhcCCCceE
Confidence 4 899999999 7776666666666666778888 99999 9999 43 12222222222222 23468
Q ss_pred eEE--eecCC---CCChHHHHHHHHHHHh
Q 027757 192 WIM--TSSVT---GLGRDELLLHMSQLRN 215 (219)
Q Consensus 192 ~~~--~Sa~~---~~~v~el~~~l~~~~~ 215 (219)
+++ +||++ +.|+++++++|.+...
T Consensus 151 ii~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 151 CISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp EEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred EEecccccccCcCCCCHHHHHHHHHhhcc
Confidence 999 99999 9999999999987654
No 164
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.77 E-value=5.7e-19 Score=133.40 Aligned_cols=117 Identities=19% Similarity=0.267 Sum_probs=74.2
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
....++|+++|++|+|||||+++|++..+......... +.... .....+.++||||.. .+......+
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~--~~~~~~~l~Dt~G~~----------~~~~~~~~~ 75 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEP-LSAAD--YDGSGVTLVDFPGHV----------KLRYKLSDY 75 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSC-EEETT--GGGSSCEEEECCCCG----------GGTHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCc-eEEEE--eeCceEEEEECCCcH----------HHHHHHHHH
Confidence 34578999999999999999999999753321111111 11111 134578999999963 222334444
Q ss_pred hhc-cCCccEEEEEEeCC-CCCCcccH--HHHHHh------ccCCCcEEEEEEccccccc
Q 027757 116 FLN-RESLVGVLLLIDAS-VPPQKIDL--DCANWL------GRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 116 ~~~-~~~~d~vi~v~d~~-~~~~~~~~--~~~~~~------~~~~~p~iiv~nK~D~~~~ 165 (219)
++. ...+|++|+|+|++ ++.+.... .+...+ ...++|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 432 12369999999999 55554332 111222 1258999999999999765
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.2e-18 Score=148.13 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=95.0
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCccccccc------------------------------CCCCeeEEeeEE---Ee
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTS------------------------------KKPGKTQLINHF---LV 83 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~------------------------------~~~~~t~~~~~~---~~ 83 (219)
...++|+++|.+|+|||||+++|++.. ..... ...|+|.+.... ..
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~-~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDL-NIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCS-SCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhc-CCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 446899999999999999999999752 11110 013444433222 23
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-------CCcccHHHHHHhccCCCc-EEE
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-------PQKIDLDCANWLGRNNIP-LTF 155 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~~p-~ii 155 (219)
+..+.+|||||+.. +..........+|++|+|+|++++ ...+..+.+..+...++| +++
T Consensus 244 ~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 244 RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence 44799999999631 223333444559999999999874 223444555555555654 999
Q ss_pred EEEcccccccccCCCchHhHHHHHHHH----HhcCC--CCCCeEEeecCCCCChHHH
Q 027757 156 VFTKCDKMKVAKGRRPDENIKSFQQLI----RENYP--HHPPWIMTSSVTGLGRDEL 206 (219)
Q Consensus 156 v~nK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~Sa~~~~~v~el 206 (219)
|+||+|+.+.. ....++..+.+ ..... ..++++++||++|.|+.++
T Consensus 311 VvNKiDl~~~~-----~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 311 AMNKMDNVDWS-----QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEECTTTTTTC-----HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEecccccchh-----HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999987621 11222222222 11111 1368999999999999865
No 166
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.74 E-value=5.1e-18 Score=140.92 Aligned_cols=157 Identities=13% Similarity=0.138 Sum_probs=91.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc--cccc---------------------------ccCCCCeeEEeeEE---EecC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKK--ELAL---------------------------TSKKPGKTQLINHF---LVNK 85 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~--~~~~---------------------------~~~~~~~t~~~~~~---~~~~ 85 (219)
..++|+++|.+|+|||||+++|++.. +... .....++|.+.... ..+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 45799999999999999999998641 1100 01123444433221 2245
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-------CCcccHHHHHHhccCCC-cEEEEE
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-------PQKIDLDCANWLGRNNI-PLTFVF 157 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~~-p~iiv~ 157 (219)
.+.+|||||+. .|......+++ .+|++|+|+|++++ ...+..+.+..+...++ |+++++
T Consensus 85 ~~~iiDtpG~~----------~f~~~~~~~~~---~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi 151 (435)
T 1jny_A 85 FFTIIDAPGHR----------DFVKNMITGAS---QADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV 151 (435)
T ss_dssp EEEECCCSSST----------THHHHHHHTSS---CCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred EEEEEECCCcH----------HHHHHHHhhhh---hcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence 79999999963 23334444444 49999999999985 33344455555555565 589999
Q ss_pred EcccccccccCCC-chHhHHHHHHHHHhcC-C-CCCCeEEeecCCCCChHHHH
Q 027757 158 TKCDKMKVAKGRR-PDENIKSFQQLIRENY-P-HHPPWIMTSSVTGLGRDELL 207 (219)
Q Consensus 158 nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~~v~el~ 207 (219)
||+|+.+....+. .....+++.+.+.... . ..++++++||++|.|+.+++
T Consensus 152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 9999976210000 0111222222222221 1 13689999999999997543
No 167
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.74 E-value=1.3e-17 Score=149.53 Aligned_cols=162 Identities=18% Similarity=0.228 Sum_probs=101.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc-------cc-------cccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKE-------LA-------LTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-------~~-------~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~ 99 (219)
...++|+++|.+++|||||+++|++... .. ......+.|....... .+..+.+|||||+.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe--- 370 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA--- 370 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH---
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH---
Confidence 3457999999999999999999997410 00 1112334444332222 23479999999952
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHH
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSF 178 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~ 178 (219)
.| ..........+|++|+|+|++++...+..+.+..+...++| +++++||+|+.+.+.. .+...++.
T Consensus 371 -------dF---~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~--le~i~eEi 438 (1289)
T 3avx_A 371 -------DY---VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL--LELVEMEV 438 (1289)
T ss_dssp -------HH---HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHH--HHHHHHHH
T ss_pred -------HH---HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhh--HHHHHHHH
Confidence 23 33334445559999999999998777777666666667888 7899999999752110 00011122
Q ss_pred HHHHHhcC--CCCCCeEEeecCCC--------CChHHHHHHHHHH
Q 027757 179 QQLIRENY--PHHPPWIMTSSVTG--------LGRDELLLHMSQL 213 (219)
Q Consensus 179 ~~~~~~~~--~~~~~~~~~Sa~~~--------~~v~el~~~l~~~ 213 (219)
.+.+.... ....+++++||++| .|+++++++|.+.
T Consensus 439 ~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~ 483 (1289)
T 3avx_A 439 RELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY 483 (1289)
T ss_dssp HHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence 22222221 12478999999999 4688888888764
No 168
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=135.85 Aligned_cols=168 Identities=17% Similarity=0.204 Sum_probs=81.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccc-cccC------CCCeeEEeeEE--Eec---CeEEEEeCCCCCCCCCCcch
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELA-LTSK------KPGKTQLINHF--LVN---KSWYIVDLPGYGFAKAPDVT 104 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~------~~~~t~~~~~~--~~~---~~~~liDtpg~~~~~~~~~~ 104 (219)
...++|+|+|++|+|||||+|+|++..... ...+ .++........ ..+ ..+.+|||||+......
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~--- 111 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC--- 111 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCcc---
Confidence 456899999999999999999988753221 1110 01111111111 111 25899999998543211
Q ss_pred hhhHHHHH-------HHHhhccCC----------ccEEEEEEeC-CCCCCcccHHHHHHhccCCCcEEEEEEcccccccc
Q 027757 105 RMDWSSFT-------KGYFLNRES----------LVGVLLLIDA-SVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVA 166 (219)
Q Consensus 105 ~~~~~~~~-------~~~~~~~~~----------~d~vi~v~d~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 166 (219)
.+.|..+. ..|++.... +|+++|+++. .......+..+++.+. .++|+++|+||+|+....
T Consensus 112 ~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~ 190 (361)
T 2qag_A 112 RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLK 190 (361)
T ss_dssp ----CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHH
Confidence 11122222 255554332 3578888876 3444444445555554 679999999999997642
Q ss_pred cCCCchHhHHHHHHHHHhcC-CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 167 KGRRPDENIKSFQQLIRENY-PHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
.+..+.+.+.... ...++++++||+++.| ++.+.++.+.+..
T Consensus 191 -------ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 191 -------ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp -------HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 2333222222222 1247899999999998 7777777665543
No 169
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.74 E-value=8.5e-18 Score=136.14 Aligned_cols=157 Identities=22% Similarity=0.238 Sum_probs=93.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-----ccccccCCCCeeEEe-----------------eEE-------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK-----ELALTSKKPGKTQLI-----------------NHF------------- 81 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~~~~~~t~~~-----------------~~~------------- 81 (219)
...++|+|+|.+|+|||||+++|.... ........+..+... ..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 456789999999999999999997531 011111111111100 000
Q ss_pred ------------EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccC
Q 027757 82 ------------LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN 149 (219)
Q Consensus 82 ------------~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~ 149 (219)
..+..++++||||+... . .... ..+|++++|+|+.......... ..+ .
T Consensus 157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~--------~-----~~~~---~~aD~vl~V~d~~~~~~~~~l~--~~~--~ 216 (355)
T 3p32_A 157 TRATRETVVLLEAAGFDVILIETVGVGQS--------E-----VAVA---NMVDTFVLLTLARTGDQLQGIK--KGV--L 216 (355)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSCSSH--------H-----HHHH---TTCSEEEEEEESSTTCTTTTCC--TTS--G
T ss_pred hHHHHHHHHHHhhCCCCEEEEeCCCCCcH--------H-----HHHH---HhCCEEEEEECCCCCccHHHHH--HhH--h
Confidence 01357999999997421 0 1112 3389999999987654432211 111 3
Q ss_pred CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC----CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY----PHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 150 ~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+.|+++|+||+|+...... ....+++.+.+.... ...++++++||++|.|+++++++|.+.+..
T Consensus 217 ~~p~ivVlNK~Dl~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 217 ELADIVVVNKADGEHHKEA---RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GGCSEEEEECCCGGGHHHH---HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred hcCCEEEEECCCCcChhHH---HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4699999999998754211 111222222222111 224689999999999999999999887654
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.74 E-value=8.1e-19 Score=146.51 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=92.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc--ccc---------------------------cccCCCCeeEEeeEEE---ecCe
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKK--ELA---------------------------LTSKKPGKTQLINHFL---VNKS 86 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~--~~~---------------------------~~~~~~~~t~~~~~~~---~~~~ 86 (219)
.++|+++|.+++|||||+++|++.. +.. ......+.|.+..... .+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 5799999999999999999998641 100 0001133443322222 2347
Q ss_pred EEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc-------ccHHHHHHhccCCCc-EEEEEE
Q 027757 87 WYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK-------IDLDCANWLGRNNIP-LTFVFT 158 (219)
Q Consensus 87 ~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-------~~~~~~~~~~~~~~p-~iiv~n 158 (219)
+.+|||||+. .|......+ ...+|++|+|+|++++... +..+.+..+...++| +++|+|
T Consensus 87 ~~iiDtPGh~----------~f~~~~~~~---~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN 153 (458)
T 1f60_A 87 VTVIDAPGHR----------DFIKNMITG---TSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN 153 (458)
T ss_dssp EEEEECCCCT----------THHHHHHHS---SSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEECCCcH----------HHHHHHHhh---hhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence 9999999953 233333333 4459999999999875322 344445555556776 999999
Q ss_pred cccccccccCCCchHhHHHHHH----HHHhcCC--CCCCeEEeecCCCCChHHH
Q 027757 159 KCDKMKVAKGRRPDENIKSFQQ----LIRENYP--HHPPWIMTSSVTGLGRDEL 206 (219)
Q Consensus 159 K~D~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~Sa~~~~~v~el 206 (219)
|+|+.+.. .+.++...+ .+..... ...+++++||++|.|+.++
T Consensus 154 K~Dl~~~~-----~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 154 KMDSVKWD-----ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp CGGGGTTC-----HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccccCC-----HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 99997311 112222222 2222111 1368999999999998743
No 171
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.73 E-value=1.1e-17 Score=135.82 Aligned_cols=162 Identities=17% Similarity=0.185 Sum_probs=102.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC---ee----------E----------------------------
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPG---KT----------Q---------------------------- 76 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~---~t----------~---------------------------- 76 (219)
..++|+|+|++|+|||||+|+|++..+.+....... +. .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 456999999999999999999999754332221110 00 0
Q ss_pred --------------EeeEEE-ecCeEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc-
Q 027757 77 --------------LINHFL-VNKSWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK- 137 (219)
Q Consensus 77 --------------~~~~~~-~~~~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~- 137 (219)
...... ....+.+|||||+..... .......+..+...|+.. +|++|+|+|+.+....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~~~ 189 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDLAT 189 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCGGG
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCcCC
Confidence 000000 123689999999764321 233444556777888887 8999999987653322
Q ss_pred -ccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHH
Q 027757 138 -IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHM 210 (219)
Q Consensus 138 -~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l 210 (219)
....+...+...+.|+++|+||+|+.+.... ..+..+.. ......+++.+++.++.++++.+.+.
T Consensus 190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~------~~~~~~~~--~~~~~~~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTD------AVEILEGR--SFKLKYPWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC------SHHHHTTS--SSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred HHHHHHHHHhcccCCCEEEEEeCCccCCCccc------HHHHHcCc--cccccCCeEEEEECChHHhccCCCHH
Confidence 2245566677778899999999999864321 11111111 12234688999999988877655443
No 172
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.73 E-value=3.2e-17 Score=142.67 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=112.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCC--------------------------------------------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKP-------------------------------------------- 72 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-------------------------------------------- 72 (219)
...|+|+|+|.+++|||||+|+|+|..+.+......
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 447899999999999999999999975432211100
Q ss_pred -----CeeEE---eeEEE-ecCeEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH
Q 027757 73 -----GKTQL---INHFL-VNKSWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL 140 (219)
Q Consensus 73 -----~~t~~---~~~~~-~~~~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~ 140 (219)
+.+.. ...+. ...+++++||||+..... .......+..+...|+. ..+|++++|+|++.+....+.
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhHH
Confidence 00000 00011 122689999999875321 12223456677777775 458999999999987776665
Q ss_pred -HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC---CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757 141 -DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY---PHHPPWIMTSSVTGLGRDELLLHMSQL 213 (219)
Q Consensus 141 -~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~el~~~l~~~ 213 (219)
.++.++...+.|+++|+||+|+.+.... ...+.. ...+ ....+++++||++|.|+++|++.+.+.
T Consensus 207 l~ll~~L~~~g~pvIlVlNKiDlv~~~~~------~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 207 LKIAKEVDPQGQRTIGVITKLDLMDEGTD------ARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHHCTTCSSEEEEEECTTSSCTTCC------SHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeCcccCCcchh------hHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 6788888889999999999999864321 111111 1111 112467889999999999999998874
No 173
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.73 E-value=2.8e-19 Score=153.31 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=88.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccc------------------------------cCCCCeeEEeeEEE---e
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALT------------------------------SKKPGKTQLINHFL---V 83 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~------------------------------~~~~~~t~~~~~~~---~ 83 (219)
...++|+++|.+++|||||+++|++.. .... ...+++|.+..... .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~-~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFEL-GEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHH-HCC-------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHc-CCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 345789999999999999999997531 0000 11334444433222 2
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------CcccHHHHHHhccCCCc-EEE
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKIDLDCANWLGRNNIP-LTF 155 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~ii 155 (219)
+..+.+|||||+..... ........+|++|+|+|++++. ..+..+.+..+...++| +++
T Consensus 254 ~~~i~iiDTPGh~~f~~-------------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv 320 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFIS-------------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320 (592)
T ss_dssp -----CCEEESSSEEEE-------------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred CeEEEEEECCChHHHHH-------------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEE
Confidence 34789999999752211 0111223389999999999754 45556666777777776 999
Q ss_pred EEEcccccccccCCCchHhHHHHHHHHHhcC----CC---CCCeEEeecCCCCChH--------------HHHHHHHH
Q 027757 156 VFTKCDKMKVAKGRRPDENIKSFQQLIRENY----PH---HPPWIMTSSVTGLGRD--------------ELLLHMSQ 212 (219)
Q Consensus 156 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~Sa~~~~~v~--------------el~~~l~~ 212 (219)
|+||+|+.+.. .+.++...+.+...+ +. .++++++||++|.|+. +|++.|.+
T Consensus 321 viNKiDl~~~~-----~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~ 393 (592)
T 3mca_A 321 SVNKLDLMSWS-----EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ 393 (592)
T ss_dssp EEECGGGGTTC-----HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT
T ss_pred EEecccccccc-----HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh
Confidence 99999987521 123333333333222 21 3579999999999998 67777754
No 174
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.72 E-value=1.4e-16 Score=139.01 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=79.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc--cc--ccccC------------CCCeeEEee---EEEecCeEEEEeCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK--EL--ALTSK------------KPGKTQLIN---HFLVNKSWYIVDLPGYGF 97 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~--~~--~~~~~------------~~~~t~~~~---~~~~~~~~~liDtpg~~~ 97 (219)
....+|+|+|.+|+|||||+++|+... .. ..... ..+.|.... ....+..+.+|||||+..
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 446799999999999999999998421 00 00000 122222211 122244799999999742
Q ss_pred CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
|......+++. +|++|+|+|++++.+......+..+...++|+++|+||+|+...
T Consensus 90 ----------f~~~~~~~l~~---aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 ----------FTIEVERSMRV---LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA 144 (691)
T ss_dssp ----------CHHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred ----------hHHHHHHHHHH---CCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 23445566666 89999999999988888777777777889999999999998753
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.71 E-value=1.4e-16 Score=130.83 Aligned_cols=186 Identities=19% Similarity=0.238 Sum_probs=112.5
Q ss_pred ccccccccceeeeeccCCCCCCCCCC--------------CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE-
Q 027757 13 YAGHSQIKEVEFVKSSGRAKDCPKDD--------------RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL- 77 (219)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~- 77 (219)
.++.....+..|..+..+.+...... ...|+|+|++|||||||+++|++.. ......+.+|..
T Consensus 117 ~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p 194 (416)
T 1udx_A 117 RGGAGGRGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSP 194 (416)
T ss_dssp CCCCCCCCGGGGCCSSCSSCCEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCC
T ss_pred cCCCCCcccceeecccccCcccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecc
Confidence 34444555666655554444322221 2468999999999999999999963 233344443332
Q ss_pred -eeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc-----
Q 027757 78 -INHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR----- 148 (219)
Q Consensus 78 -~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----- 148 (219)
...+..+ ..+.++|+||+........ .+...+++..+.++.+++++|++ .....+.. ..+.+..
T Consensus 195 ~~G~V~~~~~~~~~l~DtpGli~~a~~~~------~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL 267 (416)
T 1udx_A 195 NLGVVEVSEEERFTLADIPGIIEGASEGK------GLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPAL 267 (416)
T ss_dssp EEEEEECSSSCEEEEEECCCCCCCGGGSC------CSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHH
T ss_pred eeeEEEecCcceEEEEeccccccchhhhh------hhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh
Confidence 2233333 4689999999743211100 01112333344589999999997 22222211 1111111
Q ss_pred CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 149 NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 149 ~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
...|.++|+||+|+... ...+.+.+.+.. ...+++++||+++.|+++++++|.+.+...
T Consensus 268 ~~~P~ILVlNKlDl~~~-------~~~~~l~~~l~~---~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 268 LRRPSLVALNKVDLLEE-------EAVKALADALAR---EGLAVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp HHSCEEEEEECCTTSCH-------HHHHHHHHHHHT---TTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred hcCCEEEEEECCChhhH-------HHHHHHHHHHHh---cCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 36899999999998753 234444444432 125899999999999999999999887653
No 176
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.71 E-value=1.6e-17 Score=139.03 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=87.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc--cc---------------------ccc------cCCCCeeEEeeE--EE-ec
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK--EL---------------------ALT------SKKPGKTQLINH--FL-VN 84 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~--~~---------------------~~~------~~~~~~t~~~~~--~~-~~ 84 (219)
...++|+++|.+++|||||+++|+... +. +.. ....+.|..... +. .+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 345799999999999999999997521 10 000 012233433321 22 23
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------CcccHHHHHHhccCCCc-EEEE
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKIDLDCANWLGRNNIP-LTFV 156 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv 156 (219)
..+.+|||||+.. |.. ........+|++|+|+|++++. ..+..+.+..+...++| ++++
T Consensus 121 ~~~~iiDtPGh~~----------f~~---~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivv 187 (467)
T 1r5b_A 121 RRFSLLDAPGHKG----------YVT---NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVV 187 (467)
T ss_dssp EEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEE
T ss_pred eEEEEEECCCcHH----------HHH---HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEE
Confidence 4789999999632 222 2233344599999999999863 12345555556667887 9999
Q ss_pred EEccccccccc-CCCchHhHHHHHHHHHhc--CC--CCCCeEEeecCCCCChHHHH
Q 027757 157 FTKCDKMKVAK-GRRPDENIKSFQQLIREN--YP--HHPPWIMTSSVTGLGRDELL 207 (219)
Q Consensus 157 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~Sa~~~~~v~el~ 207 (219)
+||+|+..... .+......++..+.+... +. ..++++++||++|.|+++++
T Consensus 188 iNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 188 INKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp EECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred EECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 99999964210 000011111222222222 11 13679999999999998754
No 177
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.71 E-value=1.5e-16 Score=135.30 Aligned_cols=127 Identities=18% Similarity=0.220 Sum_probs=85.8
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEE--------------------------------
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFL-------------------------------- 82 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~-------------------------------- 82 (219)
....++|+|+|.+|+|||||+|+|++..... .+++.+.+++......
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 3567899999999999999999999975321 3444444433211110
Q ss_pred ------ec----CeEEEEeCCCCCCCCC-CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-CCcccHHHHHHhccCC
Q 027757 83 ------VN----KSWYIVDLPGYGFAKA-PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGRNN 150 (219)
Q Consensus 83 ------~~----~~~~liDtpg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~ 150 (219)
.+ ..+.+|||||+..... .......|......++.. +|++|+|+|+++. ........+..+...+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~---aD~il~VvDa~~~~~~~~~~~~l~~l~~~~ 218 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAER---VDLIILLFDAHKLEISDEFSEAIGALRGHE 218 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHH---CSEEEEEEETTSCCCCHHHHHHHHHTTTCG
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHh---CCEEEEEEeCCcCCCCHHHHHHHHHHHhcC
Confidence 01 2589999999864211 111112255666677776 8999999999884 4445556677777778
Q ss_pred CcEEEEEEccccccc
Q 027757 151 IPLTFVFTKCDKMKV 165 (219)
Q Consensus 151 ~p~iiv~nK~D~~~~ 165 (219)
.|+++|+||+|+...
T Consensus 219 ~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 219 DKIRVVLNKADMVET 233 (550)
T ss_dssp GGEEEEEECGGGSCH
T ss_pred CCEEEEEECCCccCH
Confidence 999999999999864
No 178
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.71 E-value=9e-17 Score=136.02 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCc-cccc-------------c------cCCCCeeEEe---eEEEecCeEEEEeCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKK-ELAL-------------T------SKKPGKTQLI---NHFLVNKSWYIVDLPG 94 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~-~~~~-------------~------~~~~~~t~~~---~~~~~~~~~~liDtpg 94 (219)
...+|+|+|.+|+|||||+++|++.. .... . .+..+.+... .....+..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 35799999999999999999999631 0100 0 0122222211 1122244799999999
Q ss_pred CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
+... ......+++. +|++|+|+|++++.......++..+...++|+++++||+|+...
T Consensus 92 ~~df----------~~~~~~~l~~---aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 92 HEDF----------SEDTYRTLTA---VDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR 149 (529)
T ss_dssp STTC----------CHHHHHGGGG---CSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred ChhH----------HHHHHHHHHH---CCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence 7422 1233445555 89999999999987777777777777789999999999998653
No 179
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=5e-16 Score=135.61 Aligned_cols=116 Identities=16% Similarity=0.115 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc--ccc--cc------cC------CCCeeEEee---EEEec-------CeEEEE
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK--ELA--LT------SK------KPGKTQLIN---HFLVN-------KSWYIV 90 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~--~~~--~~------~~------~~~~t~~~~---~~~~~-------~~~~li 90 (219)
....+|+|+|..|+|||||+++|+... ... .. .. ..+.|.... ..+.+ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 457899999999999999999997531 100 00 00 123333221 11222 578999
Q ss_pred eCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 91 DLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 91 Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
||||+.. |......+++. +|++|+|+|++++...+....++.+...++|+++|+||+|+...
T Consensus 88 DTPG~~d----------f~~~~~~~l~~---aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVD----------FTIEVERSMRV---LDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccc----------hHHHHHHHHHH---CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence 9999642 23444556666 89999999999988777777777777789999999999998653
No 180
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=1.6e-16 Score=138.65 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=80.1
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcCc--ccc--c------ccC------CCCeeEEee---EEEecCeEEEEeCCCCC
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRKK--ELA--L------TSK------KPGKTQLIN---HFLVNKSWYIVDLPGYG 96 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~~--~~~--~------~~~------~~~~t~~~~---~~~~~~~~~liDtpg~~ 96 (219)
.....+|+|+|.+|+|||||+|+|++.. ... . ... ..++|.... ....+..+.+|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 3456899999999999999999999521 110 0 000 122222211 12224479999999975
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
.. ......+++. +|++|+|+|++++.+..+...+..+...++|+++|+||+|+...
T Consensus 87 df----------~~~~~~~l~~---aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DF----------TVEVERSLRV---LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SC----------CHHHHHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred ch----------HHHHHHHHHH---CCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 32 2233455555 89999999999988888777777788889999999999998753
No 181
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.70 E-value=6.1e-17 Score=130.72 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=88.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-----ccccccCCCC-------------------------------------e
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK-----ELALTSKKPG-------------------------------------K 74 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~~~~~-------------------------------------~ 74 (219)
...+.|+|+|++|||||||+|+|++.. ........++ +
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 346789999999999999999999731 0111111111 1
Q ss_pred eEEeeE-----EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccC
Q 027757 75 TQLINH-----FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN 149 (219)
Q Consensus 75 t~~~~~-----~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~ 149 (219)
+..... ...+..++++||||+.... .... +.+|++++|+|++.+...... ...+ .
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~-------------~~l~---~~~d~vl~V~d~~~~~~~~~i--~~~i--l 211 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQSE-------------FAVA---DMVDMFVLLLPPAGGDELQGI--KRGI--I 211 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--CH-------------HHHH---TTCSEEEEEECCC----------------C
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchhh-------------hhHH---hhCCEEEEEEcCCcchhHHHh--HHHH--H
Confidence 110000 0123478999999975220 1112 238999999999875432211 1111 3
Q ss_pred CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC----CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY----PHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 150 ~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+.|.++|+||+|+.+.... ......+...+.... ...++++++||+++.|+++++++|.+.+.
T Consensus 212 ~~~~ivVlNK~Dl~~~~~~---~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 212 EMADLVAVTKSDGDLIVPA---RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CSCSEEEECCCSGGGHHHH---HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeeecCCCchhH---HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 5688999999998753100 011222322222111 12357899999999999999999988764
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.69 E-value=2.7e-17 Score=134.64 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=46.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-----------------------e----cCeEEEEeC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-----------------------V----NKSWYIVDL 92 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-----------------------~----~~~~~liDt 92 (219)
++|+|+|.+|+|||||+|+|++.. ...++.+++|....... . ..++.++||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 489999999999999999999974 55666666665432221 0 136899999
Q ss_pred CCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC
Q 027757 93 PGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP 134 (219)
Q Consensus 93 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~ 134 (219)
||+..... ..+.+...++...+.+|++++|+|+++.
T Consensus 79 pG~~~~a~------~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAH------EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchh------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 99753211 1123444555555669999999999875
No 183
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.69 E-value=6.1e-16 Score=134.45 Aligned_cols=113 Identities=23% Similarity=0.273 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCccc----ccc------cC------CCCeeE---EeeEEEecCeEEEEeCCCCCCC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKEL----ALT------SK------KPGKTQ---LINHFLVNKSWYIVDLPGYGFA 98 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~----~~~------~~------~~~~t~---~~~~~~~~~~~~liDtpg~~~~ 98 (219)
...+|+|+|+.|+|||||+++|++.... ... .. ..+.+. ..........+.++||||+.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~-- 85 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG-- 85 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG--
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc--
Confidence 3568999999999999999999953211 000 00 011121 12222234478999999963
Q ss_pred CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757 99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 163 (219)
.|......+++. +|++++|+|+.++........+..+...++|+++++||+|+.
T Consensus 86 --------~f~~~~~~~l~~---ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 --------DFVGEIRGALEA---ADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp --------GGHHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred --------chHHHHHHHHhh---cCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence 234455666666 899999999999887777777777777899999999999986
No 184
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.68 E-value=7.5e-17 Score=119.34 Aligned_cols=115 Identities=22% Similarity=0.318 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccc-cCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALT-SKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY 115 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~ 115 (219)
...++|+++|++|+|||||+++|++..+.... ...++++... ....+.+|||||..... ..+.......
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~------~~~~~~~~~~ 115 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLR------YKLSDYLKTR 115 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSS------CCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHH------HHHHHHHHhh
Confidence 55789999999999999999999997432211 1111111111 34578899999974321 1112222222
Q ss_pred hhccCCccEEEEEEeCC-CCCCcccHHHHHHhc----------cCCCcEEEEEEcccccccc
Q 027757 116 FLNRESLVGVLLLIDAS-VPPQKIDLDCANWLG----------RNNIPLTFVFTKCDKMKVA 166 (219)
Q Consensus 116 ~~~~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~D~~~~~ 166 (219)
. ..+|++|+|+|++ +..+... ...|+. ..+.|+++|+||+|+....
T Consensus 116 ~---~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 116 A---KFVKGLIFMVDSTVDPKKLTT--TAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp G---GGEEEEEEEEETTCCHHHHHH--HHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred c---ccCCEEEEEEECCCCchhHHH--HHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 2 2379999999998 4333222 122221 2489999999999998653
No 185
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.68 E-value=1.6e-16 Score=135.11 Aligned_cols=114 Identities=17% Similarity=0.229 Sum_probs=79.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc--------------------ccccccCCCCeeE---EeeEEEecCeEEEEeCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKK--------------------ELALTSKKPGKTQ---LINHFLVNKSWYIVDLPGY 95 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~--------------------~~~~~~~~~~~t~---~~~~~~~~~~~~liDtpg~ 95 (219)
+.+|+|+|..++|||||..+|+... +........+.|. .....+.+..+.++||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 5679999999999999999997321 0000111112222 1233344568999999997
Q ss_pred CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
.++. ....+....+|++|+|+|+.++...+...+++++.+.++|.++++||+|....
T Consensus 111 vDF~-------------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 111 QDFS-------------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL 167 (548)
T ss_dssp GGCS-------------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred HHHH-------------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence 5331 22223333489999999999999999999999999999999999999998653
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.66 E-value=1.6e-16 Score=125.77 Aligned_cols=173 Identities=18% Similarity=0.164 Sum_probs=80.6
Q ss_pred CCCCCeEEEEcCCCCCHHHHHHHHhcC-cccccccC------CCCeeEE-eeEEE----ecCeEEEEeCCCCCCCCCC--
Q 027757 36 KDDRPEFAILGRSNVGKSSLINALVRK-KELALTSK------KPGKTQL-INHFL----VNKSWYIVDLPGYGFAKAP-- 101 (219)
Q Consensus 36 ~~~~~~v~i~G~~g~GKSslin~l~~~-~~~~~~~~------~~~~t~~-~~~~~----~~~~~~liDtpg~~~~~~~-- 101 (219)
....++|+|+|++|+|||||+++|++. .+.....+ ..+.... ..... ....+.++||+|+......
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 455689999999999999999999885 22111100 0111111 11111 1236899999997432110
Q ss_pred --cchhhhHHHHHHHHhhccC----------CccEEEEEEeCCCC-CCcccHHHHHHhccCCCcEEEEEEcccccccccC
Q 027757 102 --DVTRMDWSSFTKGYFLNRE----------SLVGVLLLIDASVP-PQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKG 168 (219)
Q Consensus 102 --~~~~~~~~~~~~~~~~~~~----------~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~ 168 (219)
...........+.+++... .+++++++.+++.. ....+.++++.+. .+.|+++|+||.|+....+.
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~ 173 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKER 173 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHH
Confidence 0000001111224444321 13457777776542 4443344455544 36799999999999764221
Q ss_pred CCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 169 RRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
....+ +..+.+.. . .++++++||+++ |++++|.++.+.+..
T Consensus 174 ~~~~~---~~~~~~~~-~--~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 174 ERLKK---RILDEIEE-H--NIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp HHHHH---HHHHHHHH-T--TCCCCCCC----------CHHHHHHHHT
T ss_pred HHHHH---HHHHHHHH-c--CCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 11111 22222222 2 268999999999 999999998876643
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.65 E-value=1.6e-15 Score=118.27 Aligned_cols=124 Identities=15% Similarity=0.173 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|.+|+|||||+|+|++.. .....+..+++...... ..+..+.+|||||+..... .....++.+ ..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~--~~~~~~~~i-~~ 113 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGER-VVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY--INDMALNII-KS 113 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSC-CSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE--ECHHHHHHH-HH
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC-cccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc--chHHHHHHH-HH
Confidence 36899999999999999999999974 44445555555432222 2233799999999753321 111112222 22
Q ss_pred HhhccCCccEEEEEEeCCCC-CCcccHHHHHHhcc---CC--CcEEEEEEcccccccc
Q 027757 115 YFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGR---NN--IPLTFVFTKCDKMKVA 166 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~---~~--~p~iiv~nK~D~~~~~ 166 (219)
++. ...+|++++|+|++.. ....+...++.+.. .+ .|+++|+||+|+.+.+
T Consensus 114 ~~~-~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 114 FLL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HTT-TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred Hhh-cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 221 2348999999988653 22233344444432 11 6999999999987653
No 188
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.65 E-value=6.4e-16 Score=120.08 Aligned_cols=123 Identities=17% Similarity=0.166 Sum_probs=77.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+++|.+|+|||||+|+|++.. .....+..+++..... ... +..+.+|||||+.... ......++.+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~--~~~~~~~~~i~~- 110 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ-VVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG--YVNHQALELIKG- 110 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC-CSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT--EECHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc--cchHHHHHHHHH-
Confidence 46899999999999999999999974 4444555554443222 222 3479999999975332 112222222322
Q ss_pred HhhccCCccEEEEEEeCCCCC-CcccHHHHHHhcc---C--CCcEEEEEEccccccc
Q 027757 115 YFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGR---N--NIPLTFVFTKCDKMKV 165 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~---~--~~p~iiv~nK~D~~~~ 165 (219)
++. ...+|++++|++++... ...+...++++.. . ..|+++|+||+|+.+.
T Consensus 111 ~l~-~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 111 FLV-NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp HTT-TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred HHh-cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 221 23489999999887533 2223344555543 1 2499999999998643
No 189
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.64 E-value=2.6e-16 Score=118.98 Aligned_cols=154 Identities=11% Similarity=0.066 Sum_probs=91.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcc----cccccCCCCeeE-------------EeeE----------------EEec
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKE----LALTSKKPGKTQ-------------LINH----------------FLVN 84 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~----~~~~~~~~~~t~-------------~~~~----------------~~~~ 84 (219)
..++|+++|.+|+|||||+++|++... .+.....++.+. .... ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457999999999999999999997521 111112222110 0000 0012
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
..+.++||+|... ..+ ++. ...+.+++|+|+.++.... ..+....+.|.++|+||+|+.+
T Consensus 109 ~d~iiidt~G~~~----~~~----------~~~--~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 109 CDLLLIENVGNLI----CPV----------DFD--LGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp CSEEEEEEEEBSS----GGG----------GCC--CSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHH
T ss_pred CCEEEEeCCCCCC----CCc----------hhc--cccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCc
Confidence 3577788877310 000 110 1257899999998764321 2222224689999999999865
Q ss_pred cccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 165 VAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
... . ..++..+.+... +...+++++||++|.|+++++++|.+.+..+
T Consensus 169 ~~~--~---~~~~~~~~~~~~-~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 169 AVG--A---DVEKMKADAKLI-NPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHT--C---CHHHHHHHHHHH-CTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred chh--h---HHHHHHHHHHHh-CCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 311 1 223333333322 2336899999999999999999998876554
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.64 E-value=5.6e-16 Score=124.80 Aligned_cols=156 Identities=14% Similarity=0.122 Sum_probs=88.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCc-----ccccccCCCCeeEE---------------------eeEE---------
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKK-----ELALTSKKPGKTQL---------------------INHF--------- 81 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~~~~~~t~~---------------------~~~~--------- 81 (219)
.....|+++|++|+|||||++.|.+.. ........++++.. +...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 345789999999999999999997531 11111111111110 0000
Q ss_pred ------------EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccC
Q 027757 82 ------------LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN 149 (219)
Q Consensus 82 ------------~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~ 149 (219)
..+.++.++||||+.... .... ..+|++++|+|++.+........ . ..
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~-------------~~~~---~~aD~vl~Vvd~~~~~~~~~l~~--~--~~ 193 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE-------------TEVA---RMVDCFISLQIAGGGDDLQGIKK--G--LM 193 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH-------------HHHH---TTCSEEEEEECC------CCCCH--H--HH
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH-------------HHHH---HhCCEEEEEEeCCccHHHHHHHH--h--hh
Confidence 114579999999975210 1112 34899999999976533211110 0 12
Q ss_pred CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC----CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP----HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 150 ~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+.|.++|+||+|+..... .....+++...+..... ..++++++||++|.|+++++++|.+.+.
T Consensus 194 ~~p~ivv~NK~Dl~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 194 EVADLIVINKDDGDNHTN---VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHCSEEEECCCCTTCHHH---HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred cccCEEEEECCCCCChHH---HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 468899999999875310 01111122222222111 1357899999999999999999988664
No 191
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.62 E-value=2.9e-15 Score=123.05 Aligned_cols=169 Identities=18% Similarity=0.232 Sum_probs=78.9
Q ss_pred CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCC-----CCeeE-E-eeEE-E---ecCeEEEEeCCCCCCCCCCc
Q 027757 34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKK-----PGKTQ-L-INHF-L---VNKSWYIVDLPGYGFAKAPD 102 (219)
Q Consensus 34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~-----~~~t~-~-~~~~-~---~~~~~~liDtpg~~~~~~~~ 102 (219)
...+..++|+|+|++|+|||||+|.|++..+....... ..+.. . .... . ....+.++||+|+......
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~- 104 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN- 104 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC---------
T ss_pred EecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-
Confidence 34456788999999999999999999997432111100 11111 1 1111 1 1125789999998643211
Q ss_pred chhhhHHHH-------HHHHhhc----------cCCccEEEEEEeCC-CCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 103 VTRMDWSSF-------TKGYFLN----------RESLVGVLLLIDAS-VPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 103 ~~~~~~~~~-------~~~~~~~----------~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
...|..+ ...++.. ...+|+++|+++++ ......+...++.+.. ++|+++|+||+|+..
T Consensus 105 --~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 105 --SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLT 181 (418)
T ss_dssp -----CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSC
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCcc
Confidence 1111221 1222211 12245677887776 4555555556666664 899999999999876
Q ss_pred cccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757 165 VAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
..+..... +...+.+... .++++++|++++.++++++..+.+
T Consensus 182 ~~ev~~~k---~~i~~~~~~~---~i~~~~~sa~~~~~v~~~~~~l~~ 223 (418)
T 2qag_C 182 PEECQQFK---KQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKD 223 (418)
T ss_dssp HHHHHHHH---HHHHHHHHHH---TCCCCCCC----------------
T ss_pred HHHHHHHH---HHHHHHHHHc---CCeEEeCCCCCCcCHHHHHHHHHh
Confidence 43211111 1222222222 268899999999999988776654
No 192
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.61 E-value=5.2e-15 Score=114.73 Aligned_cols=124 Identities=14% Similarity=0.050 Sum_probs=70.5
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-H----HHHhccCCCcEEEEEEc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-C----ANWLGRNNIPLTFVFTK 159 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~----~~~~~~~~~p~iiv~nK 159 (219)
..++++||||.... ..+..+.......... +++|+++|+.......+.. . .......+.|+++|+||
T Consensus 109 ~d~iiiDtpG~~~~-------~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK 180 (262)
T 1yrb_A 109 NDYVLIDTPGQMET-------FLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNK 180 (262)
T ss_dssp CSEEEEECCSSHHH-------HHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECC
T ss_pred CCEEEEeCCCccch-------hhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEec
Confidence 47999999995311 0001111112222244 8899999987655443321 1 12223357899999999
Q ss_pred ccccccccCCCchH---hHHHHHHHH-----------------HhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757 160 CDKMKVAKGRRPDE---NIKSFQQLI-----------------RENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216 (219)
Q Consensus 160 ~D~~~~~~~~~~~~---~~~~~~~~~-----------------~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~ 216 (219)
+|+..........+ +.+.+.+.+ ...+....+++++||+++.|+++++++|.+.+..
T Consensus 181 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 181 VDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp GGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 99875421000000 111111111 0112233588999999999999999999887654
No 193
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.60 E-value=4.7e-16 Score=134.56 Aligned_cols=114 Identities=23% Similarity=0.228 Sum_probs=81.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc--c--cccc------cCC------CCeeEE---eeEEEecCeEEEEeCCCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKK--E--LALT------SKK------PGKTQL---INHFLVNKSWYIVDLPGYGFAK 99 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~--~--~~~~------~~~------~~~t~~---~~~~~~~~~~~liDtpg~~~~~ 99 (219)
+.+|+|+|..++|||||..+|+... . .... ... .+.|.. ....+.+..+.++||||+.++
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF- 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF- 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST-
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH-
Confidence 4579999999999999999997431 0 0000 000 011111 122334568999999997532
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
.....+....+|++|+|+|+.++...+...+++++.+.++|.++++||+|....
T Consensus 81 ------------~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a 134 (638)
T 3j25_A 81 ------------LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI 134 (638)
T ss_dssp ------------HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred ------------HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence 233334445599999999999999999999999999999999999999997643
No 194
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.59 E-value=8.6e-15 Score=118.47 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=79.5
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE--Ee-cCeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF--LV-NKSWYIVDLPGYGFAKAPDVTRMDWSSF 111 (219)
Q Consensus 35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~ 111 (219)
.+.+..+|+|+|.||+|||||+|+|++.. ....+.+++|.++... .. +.++.++||||+...... +.. .
T Consensus 68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~--~~~----~ 139 (376)
T 4a9a_A 68 ARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD--GRG----R 139 (376)
T ss_dssp CBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------C----H
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh--hhH----H
Confidence 34667799999999999999999999963 6678888888865433 33 347999999997543222 221 2
Q ss_pred HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccc
Q 027757 112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDK 162 (219)
Q Consensus 112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~ 162 (219)
...++...+.+|++++|+|++++....+. +...+. -.+.|.++++||.|.
T Consensus 140 g~~~l~~i~~ad~il~vvD~~~p~~~~~~-i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 140 GKQVIAVARTCNLLFIILDVNKPLHHKQI-IEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSHHHHHHH-HHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred HHHHHHHHHhcCccccccccCccHHHHHH-HHHHHHHhhHhhccCChhhhhhHhhh
Confidence 23344444458999999999976433221 111111 146788888999885
No 195
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.56 E-value=2.9e-14 Score=124.91 Aligned_cols=115 Identities=15% Similarity=0.131 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcc----ccc------c------cCCCCeeEEe---eEEEe-------cCeEEEE
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKE----LAL------T------SKKPGKTQLI---NHFLV-------NKSWYIV 90 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~----~~~------~------~~~~~~t~~~---~~~~~-------~~~~~li 90 (219)
++..+|+|+|..++|||||..+|+...- ... + ....+.|... ...+. +..+.++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 4456899999999999999999984320 000 0 1111222211 11221 2368999
Q ss_pred eCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 91 DLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 91 Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
||||+.++ ..-....++. +|++|+|+|+.++...+...+++++.+.++|.++++||+|...
T Consensus 91 DTPGHvDF----------~~Ev~~aLr~---~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 91 DTPGHVDF----------TIEVERSLRV---LDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CCCSCTTC----------HHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred eCCCCccc----------HHHHHHHHHH---hCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence 99997543 1222333444 8999999999999999999999999999999999999999854
No 196
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.55 E-value=1.9e-14 Score=109.12 Aligned_cols=62 Identities=15% Similarity=0.042 Sum_probs=43.6
Q ss_pred CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 150 ~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
+.|.++|+||+|+.+... ...+...++.+.+ +...+++++||++|.|++++++++.+.+..+
T Consensus 164 ~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 225 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVG--ADIKKMENDAKRI----NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV 225 (226)
T ss_dssp TTCSEEEEECGGGHHHHT--CCHHHHHHHHHHH----CTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hcCCEEEEeccccCchhH--HHHHHHHHHHHHh----CCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence 578899999999875321 1122333333322 2236899999999999999999999877654
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.53 E-value=3.7e-14 Score=126.09 Aligned_cols=114 Identities=18% Similarity=0.145 Sum_probs=79.2
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcCcccc--------ccc------CCCCeeEE---ee-EEEe---------------c
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRKKELA--------LTS------KKPGKTQL---IN-HFLV---------------N 84 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~--------~~~------~~~~~t~~---~~-~~~~---------------~ 84 (219)
...+|+|+|..|+|||||+++|++..-.. ... ...+.|.. .. .+.. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 45789999999999999999999742100 000 01111211 11 1210 3
Q ss_pred CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
..+.+|||||+... ......+++. +|++|+|+|+.++.+.+....+.++...++|+++++||+|+..
T Consensus 98 ~~i~liDTPG~~df----------~~~~~~~l~~---aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 98 FLINLIDSPGHVDF----------SSEVTAALRV---TDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEECCCCCCSS----------CHHHHHHHHT---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred ceEEEEECcCchhh----------HHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence 46899999997532 2344566666 8999999999999888877777777778999999999999874
No 198
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.51 E-value=2.4e-14 Score=114.91 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=62.9
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEccc
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCD 161 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D 161 (219)
+.+++++||||+.... . .. .+.+|.+++|+|+..+... +.+.. .+.+.++++||+|
T Consensus 147 ~~~~iliDT~Gi~~~~---------~----~v---~~~~d~vl~v~d~~~~~~~------~~i~~~i~~~~~ivvlNK~D 204 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---------T----AV---ADLTDFFLVLMLPGAGDEL------QGIKKGIFELADMIAVNKAD 204 (337)
T ss_dssp TCCEEEEEECSSSSCH---------H----HH---HTTSSEEEEEECSCC------------CCTTHHHHCSEEEEECCS
T ss_pred CCCEEEEECCCCCcch---------h----hH---HhhCCEEEEEEcCCCcccH------HHHHHHHhccccEEEEEchh
Confidence 4579999999986321 0 11 1238999999998643221 11111 1346688899999
Q ss_pred ccccccCCCchHhHHHHHHHHHh---cCC-----CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 162 KMKVAKGRRPDENIKSFQQLIRE---NYP-----HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+.... .......+.+.. ... ..++++.+||+++.|++++++.|.+...
T Consensus 205 l~~~~------~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 205 DGDGE------RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp TTCCH------HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ccCch------hHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 75421 112222222211 111 1368899999999999999999988765
No 199
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.47 E-value=2.9e-15 Score=121.64 Aligned_cols=124 Identities=16% Similarity=0.184 Sum_probs=81.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc-----ccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKK-----ELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK 113 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~ 113 (219)
..+|+++|.+|+|||||+|+|++.. .....++.+++|.....+..+..+.++||||+....... .... .....
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~-~~l~-~~~l~ 237 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMA-HYVG-KQSLK 237 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGG-GGSC-HHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHH-HHhh-HHHHH
Confidence 3689999999999999999999862 234567888899888777777779999999986432111 1111 12222
Q ss_pred HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
.++ ..+..+.+++++++........+..+.++...+.|+++++||+|....
T Consensus 238 ~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 238 LIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred Hhc-cccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc
Confidence 222 234478899999985321111222245566678999999999998764
No 200
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.47 E-value=1.2e-13 Score=111.19 Aligned_cols=117 Identities=8% Similarity=0.029 Sum_probs=77.1
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC-------ccc-HHHHHHhcc-------CC
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ-------KID-LDCANWLGR-------NN 150 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~-~~~~~~~~~-------~~ 150 (219)
.+.+|||+| ++.++..+..|+++ ++++|+|+|+++..+ ... .+...|+.. .+
T Consensus 194 ~l~iwDt~G----------Qe~~r~~w~~yf~~---a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~ 260 (353)
T 1cip_A 194 HFKMFDVGG----------QRSERKKWIHCFEG---VTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD 260 (353)
T ss_dssp EEEEEEECC----------SGGGGGGGGGGCTT---CSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred eEEEEeCCC----------chhhhHHHHHHHhc---CCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC
Confidence 456666665 56667888889988 999999999998543 111 222333321 57
Q ss_pred CcEEEEEEcccccccccC-------------CCchHhHHHHHHH-HHhcC----CCCCCeEEeecCCCCChHHHHHHHHH
Q 027757 151 IPLTFVFTKCDKMKVAKG-------------RRPDENIKSFQQL-IRENY----PHHPPWIMTSSVTGLGRDELLLHMSQ 212 (219)
Q Consensus 151 ~p~iiv~nK~D~~~~~~~-------------~~~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~~ 212 (219)
.|+++++||+|+...... .+..++..++... +.... ...+.++++||+++.|++++|+++.+
T Consensus 261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence 999999999998643210 1223344444332 22211 23467899999999999999999988
Q ss_pred HHh
Q 027757 213 LRN 215 (219)
Q Consensus 213 ~~~ 215 (219)
.+.
T Consensus 341 ~i~ 343 (353)
T 1cip_A 341 VII 343 (353)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 201
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.46 E-value=6.6e-15 Score=119.63 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=85.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC----cccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK----KELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~----~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..+|+++|.+|+|||||+|+|++. ......++.+++|.....+..+..+.++||||+......... .. ......
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~-l~-~~~l~~ 239 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHF-VD-ARDLKI 239 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGG-SC-TTTHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHH-Hh-HHHHHH
Confidence 358999999999999999999985 124556778888888877777778999999998643211111 11 111222
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccc
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVA 166 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~ 166 (219)
++ ..+.+|.+++++++........+..+.++...+.|+++++||.|.....
T Consensus 240 ~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 240 IT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp HS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred Hh-cccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccc
Confidence 22 2244799999999853211112222455666789999999999987643
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.44 E-value=8.1e-13 Score=106.91 Aligned_cols=86 Identities=26% Similarity=0.247 Sum_probs=54.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EE----------------------EecCeEEEEeCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HF----------------------LVNKSWYIVDLPGY 95 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~----------------------~~~~~~~liDtpg~ 95 (219)
++|+|+|.+|+|||||+|+|++.. ....+.+++|.... .. ..+..+.++||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~--~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN--ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH--TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 589999999999999999999863 33444444433221 11 12346899999997
Q ss_pred CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV 133 (219)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 133 (219)
........+. -+.+. .+++. +|++++|+|+++
T Consensus 80 ~~~a~~~~~l--g~~fl-~~ir~---ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGL--GNQFL-AHIRE---VAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCT--THHHH-HHHHT---CSEEEEEEECCC
T ss_pred cccccccchH--HHHHH-HHHHh---CCEEEEEEECCC
Confidence 6432211111 01121 22344 899999999985
No 203
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.41 E-value=2.7e-12 Score=103.32 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=52.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEec------------------CeEEEEeCCCCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLVN------------------KSWYIVDLPGYGFAK 99 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~liDtpg~~~~~ 99 (219)
.+|+|+|.+|+|||||+|+|++.. ....+.+++|.... ....+ ..+.++||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 689999999999999999999964 44455555444321 22222 368999999975321
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV 133 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 133 (219)
. .++ .+...++...+.+|++++|+|+++
T Consensus 81 ~--~~~----gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 S--KGE----GLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp H--HHG----GGTCCHHHHHHTCSEEEEEEECSC
T ss_pred c--ccc----hHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 011 111122222233899999999986
No 204
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.41 E-value=3.1e-12 Score=104.88 Aligned_cols=155 Identities=14% Similarity=0.174 Sum_probs=86.1
Q ss_pred CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccc--cCCCCeeEE-eeEEEec----CeEEEEeCCCCCCCCCCcc----
Q 027757 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALT--SKKPGKTQL-INHFLVN----KSWYIVDLPGYGFAKAPDV---- 103 (219)
Q Consensus 35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~--~~~~~~t~~-~~~~~~~----~~~~liDtpg~~~~~~~~~---- 103 (219)
..+..++++|+|++|+|||||+|.|+|....... ...++.+.. +....-. ..++++|++|+........
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~ 117 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKP 117 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHH
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhH
Confidence 3444567999999999999999999997322111 112232322 2222211 2679999999864321100
Q ss_pred ----hhhhHHHHHHHHhhcc------CC--cc-EEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCC
Q 027757 104 ----TRMDWSSFTKGYFLNR------ES--LV-GVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRR 170 (219)
Q Consensus 104 ----~~~~~~~~~~~~~~~~------~~--~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~ 170 (219)
....+..+...+.... .. +| +++++.|+..+.+..+.++++++. .+.|+++|+||+|....
T Consensus 118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~----- 191 (427)
T 2qag_B 118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISK----- 191 (427)
T ss_dssp HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCH-----
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccch-----
Confidence 0112222222221111 11 23 467788888888888888888887 68999999999998865
Q ss_pred chHhHHHHHHHHHh-cCCCCCCeEEeec
Q 027757 171 PDENIKSFQQLIRE-NYPHHPPWIMTSS 197 (219)
Q Consensus 171 ~~~~~~~~~~~~~~-~~~~~~~~~~~Sa 197 (219)
.+...+.+.+.. .-...++++++|.
T Consensus 192 --~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 192 --SELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --HHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred --HHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 334444444443 1123356666664
No 205
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.38 E-value=1.9e-12 Score=102.91 Aligned_cols=115 Identities=9% Similarity=0.014 Sum_probs=73.6
Q ss_pred CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCC-------CCCCcccH-HHHHHhcc-------CCCcEEEEEEcccc
Q 027757 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS-------VPPQKIDL-DCANWLGR-------NNIPLTFVFTKCDK 162 (219)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~-------~~~~~~~~-~~~~~~~~-------~~~p~iiv~nK~D~ 162 (219)
..|+.+|++.+++.+..|+++ ++++|+|+|++ +..+.... +...++.. .+.|+++++||+|+
T Consensus 170 ~iwDtgGQe~~R~~w~~yf~~---~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 170 RMVDVGGQRSERRKWIHCFEN---VTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246 (327)
T ss_dssp EEEEECCSHHHHTTGGGGCSS---CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred EEEEcCCchhHHHHHHHHhCC---CCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence 344445578888999999998 99999999876 22222211 22233321 57899999999998
Q ss_pred ccccc--------------CCCchHhHHHHHH-HHHhcC---CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 163 MKVAK--------------GRRPDENIKSFQQ-LIRENY---PHHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 163 ~~~~~--------------~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
..... ..+..++..++.. .+.... ...+.++++||+++.|++++|..+.+..-
T Consensus 247 ~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 247 LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp HHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 65321 1222333333322 222211 12356789999999999999999988654
No 206
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.36 E-value=2.1e-12 Score=103.16 Aligned_cols=118 Identities=8% Similarity=-0.035 Sum_probs=73.5
Q ss_pred CCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------Cccc-HHHHHHhc-------cCCCcEEEEEE
Q 027757 94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKID-LDCANWLG-------RNNIPLTFVFT 158 (219)
Q Consensus 94 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~-~~~~~~~~-------~~~~p~iiv~n 158 (219)
++....|+.+|++.+++++..|+++ ++++|+|+|+++.. +... .+...++. -.+.|+++++|
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~---a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~N 236 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSD---VDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLN 236 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCS---CSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEE
T ss_pred eeeeccccCCCcccccccHHHHhcc---CCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEE
Confidence 3334445555688899999999998 99999999998311 1111 12223332 15789999999
Q ss_pred cccccccccC-------------CCchHhHHHHH-HHH------HhcCC--------------CCCCeEEeecCCCCChH
Q 027757 159 KCDKMKVAKG-------------RRPDENIKSFQ-QLI------RENYP--------------HHPPWIMTSSVTGLGRD 204 (219)
Q Consensus 159 K~D~~~~~~~-------------~~~~~~~~~~~-~~~------~~~~~--------------~~~~~~~~Sa~~~~~v~ 204 (219)
|+|+...... ....++..+++ +.+ ..... ..+.++++||++..|++
T Consensus 237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~ 316 (340)
T 4fid_A 237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK 316 (340)
T ss_dssp CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence 9998642210 01112222222 223 11000 23568999999999999
Q ss_pred HHHHHHHHHH
Q 027757 205 ELLLHMSQLR 214 (219)
Q Consensus 205 el~~~l~~~~ 214 (219)
.+|+.+.+.+
T Consensus 317 ~vF~~v~~~I 326 (340)
T 4fid_A 317 RVFMLAVDVI 326 (340)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 207
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.32 E-value=1.2e-11 Score=96.22 Aligned_cols=125 Identities=22% Similarity=0.334 Sum_probs=73.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCccccccc-------CCCCee--EEee----EEEecCeEEEEeCCCCCCCCCCcchh
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTS-------KKPGKT--QLIN----HFLVNKSWYIVDLPGYGFAKAPDVTR 105 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-------~~~~~t--~~~~----~~~~~~~~~liDtpg~~~~~~~~~~~ 105 (219)
.++++|+|+.|+|||||+|.|+|.. .+... +..... ..+. .......++++|++|+..........
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~-~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ-VSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH-C------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC-CCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 3689999999999999999999863 22111 011111 1111 11123368999999986432211110
Q ss_pred hh--------HHHHHHHHhhcc-------CCccEEEEEEeCC-CCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757 106 MD--------WSSFTKGYFLNR-------ESLVGVLLLIDAS-VPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV 165 (219)
Q Consensus 106 ~~--------~~~~~~~~~~~~-------~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 165 (219)
.. +.......+..- ..++++++++|.. .+....+.+.++++... .++++|+||+|....
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCH
Confidence 11 111111111111 1257889999965 77888888888888876 999999999998865
No 208
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.32 E-value=5.6e-13 Score=105.47 Aligned_cols=133 Identities=19% Similarity=0.154 Sum_probs=87.2
Q ss_pred HHHHHHhcCccc-ccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757 54 SLINALVRKKEL-ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS 132 (219)
Q Consensus 54 slin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~ 132 (219)
+|+.+++...+. ..+.++.+...... ...+..+.+||+ ++.|+++...|+++ +|++|+|+|++
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~-~~~~~~~~iwD~------------qer~~~l~~~~~~~---ad~vilV~D~~ 95 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYT-PDETGSGVIENV------------LHRKNLLTKPHVAN---VDQVILVVTVK 95 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEE-CCCSSSEEEEEE------------CCCSCEETTTTEES---CCEEEEEECSS
T ss_pred cEEEEEEcccccccCCCCCCccEEEEE-EcCCCeEEEEEE------------ccccceeecccccc---CCEEEEEEeCC
Confidence 577777766566 56667777443322 222347889998 12223344567777 99999999999
Q ss_pred CCCCcccHHHHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHH
Q 027757 133 VPPQKIDLDCANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLH 209 (219)
Q Consensus 133 ~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~ 209 (219)
++.+... .+-+|+ ...++|+++|+||+|+.+... .++.+++.+.+.. . .+++++||+++.|+++++.+
T Consensus 96 ~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~----v~~~~~~~~~~~~---~-~~~~~~SAktg~gv~~lf~~ 166 (301)
T 1u0l_A 96 MPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDD----LRKVRELEEIYSG---L-YPIVKTSAKTGMGIEELKEY 166 (301)
T ss_dssp TTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHH----HHHHHHHHHHHTT---T-SCEEECCTTTCTTHHHHHHH
T ss_pred CCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchh----HHHHHHHHHHHhh---h-CcEEEEECCCCcCHHHHHHH
Confidence 8863222 222333 346899999999999976421 0223444444432 1 58999999999999999987
Q ss_pred HH
Q 027757 210 MS 211 (219)
Q Consensus 210 l~ 211 (219)
+.
T Consensus 167 l~ 168 (301)
T 1u0l_A 167 LK 168 (301)
T ss_dssp HS
T ss_pred hc
Confidence 64
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.21 E-value=7.2e-11 Score=87.13 Aligned_cols=171 Identities=15% Similarity=0.075 Sum_probs=94.8
Q ss_pred CCCCCCCCeEEEEcCC-CCCHHHHHHHHhcCcccccccCCC---------CeeEEe------eEEE--------------
Q 027757 33 DCPKDDRPEFAILGRS-NVGKSSLINALVRKKELALTSKKP---------GKTQLI------NHFL-------------- 82 (219)
Q Consensus 33 ~~~~~~~~~v~i~G~~-g~GKSslin~l~~~~~~~~~~~~~---------~~t~~~------~~~~-------------- 82 (219)
.......||++++||. ..=..+|+.++...+....+...+ |++... ...+
T Consensus 10 s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~ 89 (227)
T 3l82_B 10 SLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRARE 89 (227)
T ss_dssp CCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC----------
T ss_pred HhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhh
Confidence 3445668999999993 344568999998865333222222 111110 0000
Q ss_pred ----ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH-HH---HHHhcc----CC
Q 027757 83 ----VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL-DC---ANWLGR----NN 150 (219)
Q Consensus 83 ----~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~---~~~~~~----~~ 150 (219)
.-+++....+|| ..+.+||..++.+|+.||.+ +|++|||+|+++....... ++ ...+.+ .+
T Consensus 90 ~~~~~~~k~~~~~~~~----~~~~GGQ~klRplWr~Yy~~---TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~g 162 (227)
T 3l82_B 90 EHTSAVNKMFSRHNEG----DDQQGSRYSVIPQIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSG 162 (227)
T ss_dssp -------------------------------CCHHHHHHH---CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSC
T ss_pred hhhhhhhhcccccCCC----ccccCcHHHHHHHHHHHhcC---CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCC
Confidence 011334444554 34566899999999999999 9999999999986543322 22 223332 46
Q ss_pred CcEEEEEEcc-cccccccCCCchHhHHHHHHHHHhc-CCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 151 IPLTFVFTKC-DKMKVAKGRRPDENIKSFQQLIREN-YPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 151 ~p~iiv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
.|++|+.||. |+... ....++.+.++.. ......+..|||.+|.|+.|-++||.+.++..
T Consensus 163 apLLVlANKqqDlp~A-------ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 163 RPLLVLSCISQGDVKR-------MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp SCEEEEEEESSTTSCB-------CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred CeEEEEeCCCcCccCC-------CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 8999999996 66432 1233333333221 13456789999999999999999998876554
No 210
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.21 E-value=3.3e-11 Score=101.08 Aligned_cols=159 Identities=17% Similarity=0.155 Sum_probs=88.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHh------cCcccccccCCC---C-------------eeEEee---------------E
Q 027757 38 DRPEFAILGRSNVGKSSLINALV------RKKELALTSKKP---G-------------KTQLIN---------------H 80 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~------~~~~~~~~~~~~---~-------------~t~~~~---------------~ 80 (219)
....|+++|.+|+||||++++|. +.+ ...++..+ + ...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~k-VllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWK-TCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCC-EEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe-EEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999 442 11111100 0 000000 0
Q ss_pred E-EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcE-EEEEE
Q 027757 81 F-LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL-TFVFT 158 (219)
Q Consensus 81 ~-~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~n 158 (219)
. ..+..++++||||.... +...........+ . . .+|.+++|+|+..+.. .......+.+ .+|+ .+|+|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~--~~~l~~el~~~~~-~-i---~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlN 248 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ--EDSLFEEMLQVAN-A-I---QPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVT 248 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT--CHHHHHHHHHHHH-H-H---CCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEE
T ss_pred HHHCCCcEEEEeCCCCccc--chhHHHHHHHHHh-h-h---cCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEe
Confidence 0 02447999999997532 1111111112211 1 1 3799999999987643 2333444433 2674 89999
Q ss_pred cccccccccCCCchHhHHHHHHHHHh---------cC---CCCCCeEEeecCCCCC-hHHHHHHHHHH
Q 027757 159 KCDKMKVAKGRRPDENIKSFQQLIRE---------NY---PHHPPWIMTSSVTGLG-RDELLLHMSQL 213 (219)
Q Consensus 159 K~D~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~Sa~~~~~-v~el~~~l~~~ 213 (219)
|+|..... .........++. .. ....+.+++|+..|.| +.+|++++.+.
T Consensus 249 K~D~~~~~------g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKG------GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCC------THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccch------HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99986431 111122222210 00 0112446689999999 99999998765
No 211
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.16 E-value=8e-10 Score=90.60 Aligned_cols=165 Identities=22% Similarity=0.156 Sum_probs=93.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCccccccc---CCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTS---KKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKG 114 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~---~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~ 114 (219)
..++|+|++|||||||+|.++|........ ....+++........ ..++++|+||+.... ...+...+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~------~~~~~~L~~ 143 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN------FPPDTYLEK 143 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSS------CCHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchH------HHHHHHHHH
Confidence 489999999999999999999952111111 111111111111111 368999999975321 112222222
Q ss_pred HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc--ccccC---CCchHhHHHHHHHHH-----h
Q 027757 115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM--KVAKG---RRPDENIKSFQQLIR-----E 184 (219)
Q Consensus 115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~--~~~~~---~~~~~~~~~~~~~~~-----~ 184 (219)
+- ....+..++ ++... ...+...+.+.+...++|+++|+||.|+. ++... ......+.+.++.+. .
T Consensus 144 ~~--L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 144 MK--FYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp TT--GGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cC--CCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 11 111344454 77664 24455667777777889999999999975 11110 111233333444432 2
Q ss_pred cCCCCCCeEEeec--CCCCChHHHHHHHHHHH
Q 027757 185 NYPHHPPWIMTSS--VTGLGRDELLLHMSQLR 214 (219)
Q Consensus 185 ~~~~~~~~~~~Sa--~~~~~v~el~~~l~~~~ 214 (219)
.......++.+|+ .++.|++++.+.+.+.+
T Consensus 220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred cCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 1122347899999 56677999999997654
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.15 E-value=5.3e-11 Score=96.77 Aligned_cols=89 Identities=21% Similarity=0.143 Sum_probs=45.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe------------------cCeEEEEeCCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV------------------NKSWYIVDLPGYGFA 98 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~------------------~~~~~liDtpg~~~~ 98 (219)
..+|+|+|.+|+|||||+|+|++... ...+.+++|..... ... +..+.++||||+...
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 57899999999999999999999742 55666666654322 111 234899999997542
Q ss_pred CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC
Q 027757 99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP 135 (219)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~ 135 (219)
.....+. ......+++. +|++++|+|+.+..
T Consensus 100 as~~~gl---g~~~l~~ir~---aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 100 AHNGQGL---GNAFLSHISA---CDGIFHLTRAFEDD 130 (396)
T ss_dssp ----------CCHHHHHHHT---SSSEEEEEEC----
T ss_pred cchhhHH---HHHHHHHHHh---cCeEEEEEecCCCc
Confidence 2111110 0112334444 89999999998643
No 213
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.08 E-value=3.8e-10 Score=91.18 Aligned_cols=117 Identities=13% Similarity=0.113 Sum_probs=70.9
Q ss_pred eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc--------ccHHHHHHhc-------cCC
Q 027757 86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK--------IDLDCANWLG-------RNN 150 (219)
Q Consensus 86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~--------~~~~~~~~~~-------~~~ 150 (219)
.+.+|||+| ++.++..+..++++ ++++|+|+|+++.... .-.+...++. -.+
T Consensus 202 ~l~i~Dt~G----------q~~~r~~w~~~f~~---~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~ 268 (362)
T 1zcb_A 202 PFKMVDVGG----------QRSERKRWFECFDS---VTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN 268 (362)
T ss_dssp EEEEEEECC-----------------CTTSCTT---CCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred EEEEEeccc----------hhhhhhhHHHHhCC---CCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC
Confidence 678888887 34556777788877 8999999999984211 1112222322 157
Q ss_pred CcEEEEEEcccccccc--------------cCCCchHhHHHHH-HHHHhcC----CCCCCeEEeecCCCCChHHHHHHHH
Q 027757 151 IPLTFVFTKCDKMKVA--------------KGRRPDENIKSFQ-QLIRENY----PHHPPWIMTSSVTGLGRDELLLHMS 211 (219)
Q Consensus 151 ~p~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~ 211 (219)
.|+++++||+|+.... +..+..++..++. ..+.... ...+.++++||+++.|++++|+++.
T Consensus 269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~ 348 (362)
T 1zcb_A 269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK 348 (362)
T ss_dssp SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHH
Confidence 8999999999986432 0112233333333 1222211 2246789999999999999999998
Q ss_pred HHHh
Q 027757 212 QLRN 215 (219)
Q Consensus 212 ~~~~ 215 (219)
+.+.
T Consensus 349 ~~i~ 352 (362)
T 1zcb_A 349 DTIL 352 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 214
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.05 E-value=3.9e-10 Score=88.24 Aligned_cols=61 Identities=36% Similarity=0.489 Sum_probs=41.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA 98 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~ 98 (219)
...++|+++|.+|+|||||+|+|++. ....+.+.+++|++...+..+..+.++||||+...
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP 178 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCS
T ss_pred CCCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCC
Confidence 34579999999999999999999997 56778888899988776667778999999998644
No 215
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.05 E-value=1.4e-10 Score=93.35 Aligned_cols=113 Identities=9% Similarity=-0.025 Sum_probs=70.5
Q ss_pred CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCC----------CCCCcccHHHHHHhc-------cCCCcEEEEEEcc
Q 027757 98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS----------VPPQKIDLDCANWLG-------RNNIPLTFVFTKC 160 (219)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~ 160 (219)
..|+.+|++.++.++..|+++ ++++|+|+|++ +..+. .+...|+. ..+.|+++|+||+
T Consensus 186 ~iwDtaGQe~~r~~~~~y~~~---~~~iI~v~dis~ydq~l~e~~~~~s~--~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 186 RLFDVGGQRNERRKWIHLFEG---VTAVIFCAAISEYDQTLFEDEQKNRM--METKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp EEEEECCSTTGGGGTGGGCTT---EEEEEEEEEGGGTTCBCSSCTTSBHH--HHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred EEEECCCchhhhHHHHHHhCC---CCEEEEEEECcccccccccccchhHH--HHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 334444567778888999988 99999999998 22222 12233332 1578999999999
Q ss_pred cccccccCCCc-------------------hHhHHHHH-HHHHhc---C------CCCCCeEEeecCCCCChHHHHHHHH
Q 027757 161 DKMKVAKGRRP-------------------DENIKSFQ-QLIREN---Y------PHHPPWIMTSSVTGLGRDELLLHMS 211 (219)
Q Consensus 161 D~~~~~~~~~~-------------------~~~~~~~~-~~~~~~---~------~~~~~~~~~Sa~~~~~v~el~~~l~ 211 (219)
|+.......+. .++..++. +.+... . .....++++||+++.|++++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 98654221111 12222221 111110 0 1223468999999999999999998
Q ss_pred HHHh
Q 027757 212 QLRN 215 (219)
Q Consensus 212 ~~~~ 215 (219)
+.+.
T Consensus 341 ~~I~ 344 (354)
T 2xtz_A 341 ETLR 344 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 216
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.96 E-value=4.9e-09 Score=85.04 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=73.7
Q ss_pred hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
.++.|.++...++.. ++++++|+|++++.+....++.+++. +.|+++|+||+|+.+.. ...+...++.....
T Consensus 57 ~~e~f~~~L~~~~~~---~~lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~---~~~~~~~~~l~~~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGES---KALVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPRS---VKYPKLLRWMRRMA 128 (369)
T ss_dssp --CHHHHHHHHHHHH---CCEEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCTT---CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhcc---CcEEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCCc---cCHHHHHHHHHHHH
Confidence 467788898888887 78999999999876544434444443 78999999999998642 22334455544332
Q ss_pred hcCC-CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 184 ENYP-HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 184 ~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
...+ ...+++++||++|.|++++++.+.+..+
T Consensus 129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 2222 2236899999999999999999987654
No 217
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.95 E-value=1.1e-08 Score=79.89 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=69.6
Q ss_pred HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757 113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192 (219)
Q Consensus 113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (219)
+........+|+++.|+|+.++.+..+..+.+++ .++|.++|+||+|+.+. +..+.+.+.+.. ...++
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~-------~~~~~~~~~~~~---~g~~~ 82 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA-------AVTQQWKEHFEN---QGIRS 82 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH-------HHHHHHHHHHHT---TTCCE
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH-------HHHHHHHHHHHh---cCCcE
Confidence 3344444558999999999999888766666666 47899999999999863 345556665543 12589
Q ss_pred EEeecCCCCChHHHHHHHHHHHh
Q 027757 193 IMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 193 ~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
+++||+++.|++++++.+.+.+.
T Consensus 83 i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 83 LSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHHH
Confidence 99999999999999998887764
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.94 E-value=3.7e-09 Score=85.72 Aligned_cols=104 Identities=15% Similarity=0.104 Sum_probs=71.3
Q ss_pred hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR 183 (219)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 183 (219)
..+.|.++...+++. +|++++|+|++++.......+.+++ .++|+++|+||+|+.+.. ...+..+++.+...
T Consensus 55 ~~e~f~~~l~~i~~~---~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~---~~~~~~~~~l~~~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKS---DALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKS---VKHDKVKHWMRYSA 126 (368)
T ss_dssp -CHHHHHHHHHHHHS---CCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTT---SCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcc---CcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCcc---cCHHHHHHHHHHHH
Confidence 457788899998888 7899999999875322212223333 378999999999997642 22334555544332
Q ss_pred hcCC-CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757 184 ENYP-HHPPWIMTSSVTGLGRDELLLHMSQLRN 215 (219)
Q Consensus 184 ~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~~~ 215 (219)
...+ ...+++++||++|.|++++++.+.+...
T Consensus 127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 2222 2236899999999999999999987543
No 219
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.94 E-value=1.9e-09 Score=83.38 Aligned_cols=108 Identities=11% Similarity=-0.082 Sum_probs=73.2
Q ss_pred CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH----HHHHhcc----CCCcEEEEEEc-ccccccccCCC
Q 027757 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD----CANWLGR----NNIPLTFVFTK-CDKMKVAKGRR 170 (219)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~----~~~p~iiv~nK-~D~~~~~~~~~ 170 (219)
.+.+||..++.+++.|+.+ +|++|||+|+++.......+ +...+.+ .+.|++|+.|| -|+...
T Consensus 192 ~~~GGQ~~lRplWr~Yy~~---tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A----- 263 (312)
T 3l2o_B 192 DQQGSRYSVIPQIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR----- 263 (312)
T ss_dssp -----CCCCCHHHHHHHHH---CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB-----
T ss_pred cCCCCHHHHHHHHHHHhcC---CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC-----
Confidence 4457889999999999999 99999999999876533222 1122321 57899999997 477543
Q ss_pred chHhHHHHHHHHHhc-CCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757 171 PDENIKSFQQLIREN-YPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217 (219)
Q Consensus 171 ~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~ 217 (219)
....++.+.++.. ......+..+||.+|+|+.|-++||.+.++..
T Consensus 264 --ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 264 --MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp --CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred --CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 1223333333221 12456789999999999999999999887654
No 220
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.90 E-value=8.5e-10 Score=85.39 Aligned_cols=58 Identities=33% Similarity=0.488 Sum_probs=41.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA 98 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~ 98 (219)
.+++++|.+|+|||||+|+|.+. ....+.+.+++|.....+..+..+.++||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccC
Confidence 69999999999999999999997 45567788888887766666778999999997644
No 221
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.89 E-value=9.5e-10 Score=89.72 Aligned_cols=114 Identities=11% Similarity=0.025 Sum_probs=72.7
Q ss_pred CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC----------CCCcccHHHHHHhcc-------CCCcEEEEEEc
Q 027757 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV----------PPQKIDLDCANWLGR-------NNIPLTFVFTK 159 (219)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~~~~~~~~~~~~~-------~~~p~iiv~nK 159 (219)
...|+.+|++.++..+..|+++ ++++|+|+|+++ ..+.. ....|+.. .+.|+++|+||
T Consensus 219 l~iwDtaGQe~~r~~w~~yf~~---a~~iIfV~dis~ydq~l~ed~~~ns~~--e~~~~~~~i~~~~~~~~~piiLvgNK 293 (402)
T 1azs_C 219 FHMFDVGGQRDERRKWIQCFND---VTAIIFVVASSSYNMVIREDNQTNRLQ--EALNLFKSIWNNRWLRTISVILFLNK 293 (402)
T ss_dssp EEEEEECCSGGGGGGGGGGTTT---CCEEEEEEETTGGGCBCTTTSCSBHHH--HHHHHHHHHHTCTTCSSCCEEEEEEC
T ss_pred ceecccchhhhhhhhhHhhccC---CCEEEEEEECcccccccccccccchHH--HHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 3445555577788899999998 999999999997 32222 23333331 46899999999
Q ss_pred cccccccc---CC----------------------C---chHhHHHHHH-HHHhc------CCCCCCeEEeecCCCCChH
Q 027757 160 CDKMKVAK---GR----------------------R---PDENIKSFQQ-LIREN------YPHHPPWIMTSSVTGLGRD 204 (219)
Q Consensus 160 ~D~~~~~~---~~----------------------~---~~~~~~~~~~-~~~~~------~~~~~~~~~~Sa~~~~~v~ 204 (219)
+|+..... .. - ..+....+.. .+... ....+.++++||+++.|++
T Consensus 294 ~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~ 373 (402)
T 1azs_C 294 QDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIR 373 (402)
T ss_dssp HHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHH
T ss_pred hhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHH
Confidence 99854321 10 0 0122223321 11111 0123457899999999999
Q ss_pred HHHHHHHHHHh
Q 027757 205 ELLLHMSQLRN 215 (219)
Q Consensus 205 el~~~l~~~~~ 215 (219)
++|.++.+.+.
T Consensus 374 ~vF~~v~~~I~ 384 (402)
T 1azs_C 374 RVFNDCRDIIQ 384 (402)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 222
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.89 E-value=4e-09 Score=85.90 Aligned_cols=88 Identities=17% Similarity=0.152 Sum_probs=58.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEec------------------CeEEEEeCCCCCCC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLVN------------------KSWYIVDLPGYGFA 98 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~liDtpg~~~~ 98 (219)
..+++|+|++|+|||||+|+|++.. .+...+.+++|.... ....+ ..+.++|+||+...
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~-~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSV-LGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST-TTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-cccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 5799999999999999999999963 446677777666432 23333 24789999997532
Q ss_pred CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757 99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV 133 (219)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 133 (219)
... ++ .+.......++ .+|++++|+|+.+
T Consensus 99 ~s~--~e-~L~~~fl~~ir---~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 AST--GV-GLGNAFLSHVR---AVDAIYQVVRAFD 127 (392)
T ss_dssp CCS--SS-SSCHHHHHHHT---TCSEEEEEEECCC
T ss_pred CcH--HH-HHHHHHHHHHH---HHHHHHHHHhccc
Confidence 221 11 11111122333 4899999999874
No 223
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.85 E-value=4.3e-08 Score=84.51 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=49.4
Q ss_pred eEEEEeCCCCCC---CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-CCcccHHHHHHhccCCCcEEEEEEccc
Q 027757 86 SWYIVDLPGYGF---AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGRNNIPLTFVFTKCD 161 (219)
Q Consensus 86 ~~~liDtpg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~D 161 (219)
++.++|.||+.. ...+...+.....+...|.... ...+++++..... .+.....+...+...+.+.++|+||.|
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~--~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ--ETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSS--SCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcC--CCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 589999999764 2334445555566666665442 2345666655432 222235667777777889999999999
Q ss_pred ccccc
Q 027757 162 KMKVA 166 (219)
Q Consensus 162 ~~~~~ 166 (219)
+.+..
T Consensus 226 lv~~g 230 (608)
T 3szr_A 226 LVDKG 230 (608)
T ss_dssp GSSSS
T ss_pred hcCcc
Confidence 87543
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.80 E-value=2.9e-08 Score=81.80 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCc-----cccccc--CC--------------CCeeEEee-EE---------------
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKK-----ELALTS--KK--------------PGKTQLIN-HF--------------- 81 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~--~~--------------~~~t~~~~-~~--------------- 81 (219)
+..|+++|++|+||||++..|...- ...... +. .+...... ..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999998420 011000 00 01111100 00
Q ss_pred EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccc
Q 027757 82 LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161 (219)
Q Consensus 82 ~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 161 (219)
..+..++++||||.... +.....+...+.. . ..+|.+++|+|+..+... ......+.+.-.+..+|+||+|
T Consensus 180 ~~~~DvVIIDTaGrl~~--d~~lm~el~~i~~----~-~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD 250 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE--DKALIEEMKQISN----V-IHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLD 250 (443)
T ss_dssp HTTCSEEEEECCCCSSC--CHHHHHHHHHHHH----H-HCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCS
T ss_pred hCCCCEEEEECCCcccc--hHHHHHHHHHHHH----h-hcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCC
Confidence 01257899999996422 1111111122211 1 126889999999864322 3334445544456779999999
Q ss_pred cccc
Q 027757 162 KMKV 165 (219)
Q Consensus 162 ~~~~ 165 (219)
....
T Consensus 251 ~~~~ 254 (443)
T 3dm5_A 251 GSAK 254 (443)
T ss_dssp SCSS
T ss_pred Cccc
Confidence 8653
No 225
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.80 E-value=9.2e-09 Score=81.25 Aligned_cols=88 Identities=17% Similarity=0.190 Sum_probs=60.0
Q ss_pred HHhhccCCccEEEEEEeCCCCC-Cccc-HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757 114 GYFLNRESLVGVLLLIDASVPP-QKID-LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191 (219)
Q Consensus 114 ~~~~~~~~~d~vi~v~d~~~~~-~~~~-~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
.++.+ +|++++|+|++++. +... .+.+..+...++|+++|+||+|+.+... ....+++.+.+... ..+
T Consensus 75 ~~~~n---aD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~----v~~~~~~~~~~~~~---g~~ 144 (302)
T 2yv5_A 75 PKVAN---VDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEE----KKELERWISIYRDA---GYD 144 (302)
T ss_dssp TEEES---CCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHH----HHHHHHHHHHHHHT---TCE
T ss_pred HHHHh---cCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccc----cHHHHHHHHHHHHC---CCe
Confidence 45555 89999999999875 4332 1233344457899999999999976420 01133333333322 258
Q ss_pred eEEeecCCCCChHHHHHHHH
Q 027757 192 WIMTSSVTGLGRDELLLHMS 211 (219)
Q Consensus 192 ~~~~Sa~~~~~v~el~~~l~ 211 (219)
++++||+++.|++++++.+.
T Consensus 145 ~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 145 VLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp EEECCTTTCTTHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHhhcc
Confidence 99999999999999998764
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.78 E-value=8.7e-09 Score=87.91 Aligned_cols=99 Identities=19% Similarity=0.155 Sum_probs=55.6
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccC-CCCeeEEeeEEE------ecCeEEEEeCCCCCCCCC-CcchhhhH
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSK-KPGKTQLINHFL------VNKSWYIVDLPGYGFAKA-PDVTRMDW 108 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t~~~~~~~------~~~~~~liDtpg~~~~~~-~~~~~~~~ 108 (219)
....+|+|+|.+|+|||||+|+|+|....-.... +.++|..+..+. .+..+.++||||+..... +.....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~-- 113 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS-- 113 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH--
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH--
Confidence 4467899999999999999999999742111221 123333332221 234799999999864322 111111
Q ss_pred HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHH
Q 027757 109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCA 143 (219)
Q Consensus 109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~ 143 (219)
..+.-..+.. + ++|+|+.......+...+
T Consensus 114 ~~fala~lls----s--~lv~n~~~~i~~~dl~~l 142 (592)
T 1f5n_A 114 WIFALAVLLS----S--TFVYNSIGTINQQAMDQL 142 (592)
T ss_dssp HHHHHHHHHC----S--EEEEEEESCSSHHHHHTT
T ss_pred HHHHHHHHhc----C--eEEEECCCCccHHHHHHH
Confidence 1111111112 2 677787776666665433
No 227
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.73 E-value=1.2e-08 Score=84.18 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcc-----ccccc------------------------CCCCeeEEe--------eEE
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKE-----LALTS------------------------KKPGKTQLI--------NHF 81 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~-----~~~~~------------------------~~~~~t~~~--------~~~ 81 (219)
...|+++|++|+||||+++.|.+.-. ....+ +..+++.+. ...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999987410 00000 000011110 001
Q ss_pred EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-c-EEEEEEc
Q 027757 82 LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-P-LTFVFTK 159 (219)
Q Consensus 82 ~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p-~iiv~nK 159 (219)
.+..++++||||.... ....+..+. . +.....+|.+++|+|+..+.. .....+.+.. .. | ..+|+||
T Consensus 179 -~~~D~vIIDT~G~~~~-----~~~l~~~l~-~-i~~~~~~d~vllVvda~~g~~--~~~~~~~~~~-~~~~i~gvVlnK 247 (432)
T 2v3c_C 179 -KKADVLIIDTAGRHKE-----EKGLLEEMK-Q-IKEITNPDEIILVIDGTIGQQ--AGIQAKAFKE-AVGEIGSIIVTK 247 (432)
T ss_dssp -SSCSEEEEECCCSCSS-----HHHHHHHHH-H-TTSSSCCSEEEEEEEGGGGGG--HHHHHHHHHT-TSCSCEEEEEEC
T ss_pred -hCCCEEEEcCCCCccc-----cHHHHHHHH-H-HHHHhcCcceeEEeeccccHH--HHHHHHHHhh-cccCCeEEEEeC
Confidence 3457999999996421 111122221 1 222224799999999976531 1222333332 35 5 8999999
Q ss_pred ccccc
Q 027757 160 CDKMK 164 (219)
Q Consensus 160 ~D~~~ 164 (219)
+|...
T Consensus 248 ~D~~~ 252 (432)
T 2v3c_C 248 LDGSA 252 (432)
T ss_dssp SSSCS
T ss_pred CCCcc
Confidence 99754
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.59 E-value=3.1e-07 Score=75.61 Aligned_cols=99 Identities=17% Similarity=0.055 Sum_probs=54.2
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 163 (219)
+..++++||||......+.....+...+... . ..|.+++|+|+..+.. .......+.+.-.+..+|+||+|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~----~-~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDV----L-KPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHH----H-CCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHh----h-CCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc
Confidence 3478999999964311222222222222221 1 1588999999986422 2334444444345688999999976
Q ss_pred ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCCh
Q 027757 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGR 203 (219)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 203 (219)
... ..........+ .|+.+++. |.++
T Consensus 252 a~~------G~als~~~~~g------~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 252 AKG------GGALSAVVATG------ATIKFIGT--GEKI 277 (433)
T ss_dssp SCH------HHHHHHHHHHT------CEEEEEEC--CSSS
T ss_pred ccc------hHHHHHHHHHC------CCEEEEEC--CCCh
Confidence 431 12222333222 57788875 5554
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.57 E-value=8.4e-08 Score=74.16 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=58.6
Q ss_pred cCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecC
Q 027757 119 RESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSV 198 (219)
Q Consensus 119 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 198 (219)
...+|+++.|+|+.++.+.....+. ++ ++|.++|+||+|+.+. ...+.+.+.+... ..++ ++||+
T Consensus 19 l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~-------~~~~~~~~~~~~~---g~~v-~iSa~ 83 (262)
T 3cnl_A 19 LRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADE-------KTTKKWVEFFKKQ---GKRV-ITTHK 83 (262)
T ss_dssp HTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCH-------HHHHHHHHHHHHT---TCCE-EECCT
T ss_pred HhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCH-------HHHHHHHHHHHHc---CCeE-EEECC
Confidence 3448999999999998776543322 33 8999999999999864 3445555555432 2467 99999
Q ss_pred CCCChHHHHHHHHH
Q 027757 199 TGLGRDELLLHMSQ 212 (219)
Q Consensus 199 ~~~~v~el~~~l~~ 212 (219)
++.|++++++++.+
T Consensus 84 ~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 84 GEPRKVLLKKLSFD 97 (262)
T ss_dssp TSCHHHHHHHHCCC
T ss_pred CCcCHHHHHHHHHH
Confidence 99999999987643
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.35 E-value=1.7e-06 Score=67.96 Aligned_cols=73 Identities=22% Similarity=0.109 Sum_probs=39.4
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccc
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDK 162 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~ 162 (219)
+..++++||||......+ ......+... .....+|.+++|+|+... .......+.+.+ ..| ..+|+||+|.
T Consensus 180 ~~D~ViIDTpg~~~~~~~---~~l~~el~~i--~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEE---AALLEEMKNI--YEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDG 251 (297)
T ss_dssp TCSEEEEECCCSCCTTCH---HHHHHHHHHH--HHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGG
T ss_pred CCCEEEEeCCCCcccccH---HHHHHHHHHH--HHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCC
Confidence 347999999996431010 0111111110 011127899999999753 122333333333 356 7889999997
Q ss_pred cc
Q 027757 163 MK 164 (219)
Q Consensus 163 ~~ 164 (219)
..
T Consensus 252 ~~ 253 (297)
T 1j8m_F 252 TA 253 (297)
T ss_dssp CT
T ss_pred Cc
Confidence 53
No 231
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.25 E-value=7e-06 Score=65.37 Aligned_cols=142 Identities=15% Similarity=0.078 Sum_probs=74.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCC-----------------------CeeEEeeE---E-----------
Q 027757 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKP-----------------------GKTQLINH---F----------- 81 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-----------------------~~t~~~~~---~----------- 81 (219)
.-.++++|+.|+||||+++.+.+.. .+ ..... +....... .
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l-~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL-KN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH-HH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 3468999999999999999998741 11 10000 00000000 0
Q ss_pred --EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEc
Q 027757 82 --LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK 159 (219)
Q Consensus 82 --~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 159 (219)
..+..+.++||+|........ ...+..+... + . .|-.++++|+..... -....+.+.+.-....+++||
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~l--~~eL~~i~ra-l-~---~de~llvLDa~t~~~--~~~~~~~~~~~~~it~iilTK 277 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRNL--MDEMKKIARV-T-K---PNLVIFVGDALAGNA--IVEQARQFNEAVKIDGIILTK 277 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTCH--HHHHHHHHHH-H-C---CSEEEEEEEGGGTTH--HHHHHHHHHHHSCCCEEEEEC
T ss_pred HHhccchhhHHhhccchhHHHHH--HHHHHHHHHH-h-c---CCCCEEEEecHHHHH--HHHHHHHHHHhcCCCEEEEeC
Confidence 012357889999974322221 1111221111 1 1 588899999876421 123333333222345788999
Q ss_pred ccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHH
Q 027757 160 CDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDE 205 (219)
Q Consensus 160 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e 205 (219)
.|..... -..-......+ .|+.+++ +|.++++
T Consensus 278 lD~~a~~------G~~l~~~~~~~------~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 278 LDADARG------GAALSISYVID------APILFVG--VGQGYDD 309 (328)
T ss_dssp GGGCSCC------HHHHHHHHHHT------CCEEEEE--CSSSTTC
T ss_pred cCCccch------hHHHHHHHHHC------CCEEEEe--CCCCccc
Confidence 9964321 12233333333 5888887 5655544
No 232
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.16 E-value=1.5e-06 Score=68.46 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=58.7
Q ss_pred cCCccEEEEEEeCCCCCCcccHHHHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757 119 RESLVGVLLLIDASVPPQKIDLDCANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195 (219)
Q Consensus 119 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (219)
...+|.+++|+|+.+|....+ .+-+++ ...++|.++|+||+|+.+... ..+..+++.+.+... ..+++.+
T Consensus 84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~---~~~~~~~~~~~y~~~---g~~v~~~ 156 (307)
T 1t9h_A 84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQD---TEDTIQAYAEDYRNI---GYDVYLT 156 (307)
T ss_dssp EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHH---HHHHHHHHHHHHHHH---TCCEEEC
T ss_pred HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhh---hHHHHHHHHHHHHhC---CCeEEEE
Confidence 344899999999998877665 333444 347899999999999986420 001245555555332 1589999
Q ss_pred ecCCCCChHHHHHHH
Q 027757 196 SSVTGLGRDELLLHM 210 (219)
Q Consensus 196 Sa~~~~~v~el~~~l 210 (219)
||.++.|+++|+...
T Consensus 157 sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 157 SSKDQDSLADIIPHF 171 (307)
T ss_dssp CHHHHTTCTTTGGGG
T ss_pred ecCCCCCHHHHHhhc
Confidence 999999988877543
No 233
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.05 E-value=1e-05 Score=66.94 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...-|.|+|++++|||||+|+|++.
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhh
Confidence 3456889999999999999999973
No 234
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.99 E-value=1.6e-05 Score=62.66 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.|+++|++|+||||++..|.+.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHHH
Confidence 35889999999999999988864
No 235
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.94 E-value=2.6e-06 Score=67.08 Aligned_cols=56 Identities=27% Similarity=0.336 Sum_probs=32.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCC-------CeeEEeeEEEecCeEEEEeCCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKP-------GKTQLINHFLVNKSWYIVDLPGYGF 97 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpg~~~ 97 (219)
-.++|+|++|+|||||+|.|.+.. ........ .+|......... ...++||||+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~-~~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~ 236 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL-GLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS 236 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred CEEEEECCCCCCHHHHHHHhcccc-cccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence 489999999999999999999862 22222111 233322222222 457899999764
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.93 E-value=2.8e-05 Score=62.45 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=53.8
Q ss_pred CCccEEEEEEeCCCCCCcccHHHHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757 120 ESLVGVLLLIDASVPPQKIDLDCANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196 (219)
Q Consensus 120 ~~~d~vi~v~d~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 196 (219)
..+|.+++| ++..|..... .+-+++ ...++|.++|+||+|+.+.+. .+..+++...+.. ...+++++|
T Consensus 129 anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~----~~~~~~~~~~y~~---~G~~v~~~S 199 (358)
T 2rcn_A 129 ANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEG----MDFVNEQMDIYRN---IGYRVLMVS 199 (358)
T ss_dssp ECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHH----HHHHHHHHHHHHT---TTCCEEECB
T ss_pred hcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchh----HHHHHHHHHHHHh---CCCcEEEEe
Confidence 447888866 4555654433 233343 346788999999999986520 1124455555443 235799999
Q ss_pred cCCCCChHHHHHHH
Q 027757 197 SVTGLGRDELLLHM 210 (219)
Q Consensus 197 a~~~~~v~el~~~l 210 (219)
+.++.|++++...+
T Consensus 200 a~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 200 SHTQDGLKPLEEAL 213 (358)
T ss_dssp TTTTBTHHHHHHHH
T ss_pred cCCCcCHHHHHHhc
Confidence 99999999988654
No 237
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.87 E-value=2.3e-05 Score=61.67 Aligned_cols=55 Identities=27% Similarity=0.332 Sum_probs=34.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC-------eeEEeeEEEecCeEEEEeCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPG-------KTQLINHFLVNKSWYIVDLPGYG 96 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~liDtpg~~ 96 (219)
..++++|++|+|||||+|.+. . ..+....... ++.............++|+||+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~-~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-G-EELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-S-CCCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred cEEEEECCCCCCHHHHHHHHH-H-hhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 478999999999999999999 5 2332222211 22222222233345788999975
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.80 E-value=3.3e-05 Score=63.77 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHh
Q 027757 39 RPEFAILGRSNVGKSSLINALV 60 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~ 60 (219)
...|+++|.+|+||||++..|.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4468889999999999999988
No 239
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.77 E-value=1.7e-05 Score=63.77 Aligned_cols=57 Identities=32% Similarity=0.382 Sum_probs=34.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCC---C----eeEEeeEEEecCeEEEEeCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKP---G----KTQLINHFLVNKSWYIVDLPGYG 96 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~---~----~t~~~~~~~~~~~~~liDtpg~~ 96 (219)
-.++|+|++|+|||||+|.|.+........... + ++.............++|+||+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHH
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHH
Confidence 379999999999999999999963202211111 1 22222333344445678999964
No 240
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.71 E-value=2.6e-05 Score=61.39 Aligned_cols=56 Identities=30% Similarity=0.342 Sum_probs=33.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcCcccccccCCC-------CeeEEeeEEEecCeEEEEeCCCCC
Q 027757 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKP-------GKTQLINHFLVNKSWYIVDLPGYG 96 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpg~~ 96 (219)
-.++++|++|+|||||+|.+.+.. .+...... .++.............++|+||+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~-~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL-KLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC-CCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred CeEEEECCCCCcHHHHHHHhcccc-cccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 478999999999999999999863 22211111 122222222222345788999964
No 241
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.65 E-value=0.0002 Score=56.16 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-.++++|+.|+||||++..|.+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999988753
No 242
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.58 E-value=0.0015 Score=51.78 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+++|++|+||||++..|.+.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999988753
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.55 E-value=5.4e-05 Score=55.71 Aligned_cols=26 Identities=35% Similarity=0.641 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.....|+|+|++|+|||||+++|.+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 34457899999999999999999985
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.52 E-value=0.00013 Score=59.98 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++++|+.|+||||++..|.+.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35888999999999999988854
No 245
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.45 E-value=6.3e-05 Score=54.46 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++|+|++|||||||++.|.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999985
No 246
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.44 E-value=7.9e-05 Score=53.95 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+++|+|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 247
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.43 E-value=6.9e-05 Score=55.16 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++|+|++|||||||++.+.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999984
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.42 E-value=0.00059 Score=53.42 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++++|+.|+||||++..+.+.
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36888999999999999988864
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.42 E-value=6.5e-05 Score=54.78 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027757 42 FAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~ 62 (219)
|+|+||+|+|||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999875
No 250
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.40 E-value=0.0001 Score=61.62 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.3
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.....|+++|.+|+||||+.++|...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 33568999999999999999999875
No 251
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.39 E-value=0.0019 Score=49.41 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|++.|.+||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999864
No 252
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.33 E-value=0.0001 Score=53.60 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-++|+|++|||||||++.|.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999985
No 253
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.28 E-value=0.00013 Score=53.67 Aligned_cols=23 Identities=43% Similarity=0.576 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|++|||||||++.|.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 36899999999999999999985
No 254
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.27 E-value=0.00013 Score=53.97 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999985
No 255
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.27 E-value=0.00042 Score=50.80 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=42.6
Q ss_pred cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccC-----CCcEEEEEE
Q 027757 84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN-----NIPLTFVFT 158 (219)
Q Consensus 84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~n 158 (219)
.+.++++|||+... ......+.. +|.+|+++..+... ..-....+.+... +.++.+|+|
T Consensus 75 ~yD~viiD~~~~~~------------~~~~~~l~~---ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N 138 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS------------VITSAAVMV---SDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLIT 138 (206)
T ss_dssp TSSEEEEECCSSSS------------HHHHHHHHH---CSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred CCCEEEEECCCCCC------------HHHHHHHHH---CCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 35789999998431 111223333 79999999988765 4444555665542 467899999
Q ss_pred ccccc
Q 027757 159 KCDKM 163 (219)
Q Consensus 159 K~D~~ 163 (219)
++|..
T Consensus 139 ~~~~~ 143 (206)
T 4dzz_A 139 RKIEM 143 (206)
T ss_dssp SBCTT
T ss_pred ccCCC
Confidence 99854
No 256
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.27 E-value=0.00014 Score=54.54 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
--++|+|++|||||||++.+.+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999985
No 257
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.26 E-value=0.00013 Score=54.45 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|++|||||||++.+.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999999985
No 258
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.26 E-value=0.00015 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999985
No 259
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.19 E-value=0.00019 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-|+|+|++|||||||++.|.+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 46899999999999999999986
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.19 E-value=0.00018 Score=53.30 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|+|++|+|||||++.|.+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999985
No 261
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.14 E-value=0.00022 Score=53.99 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999995
No 262
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.12 E-value=0.00025 Score=50.28 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++++|+.|||||||++.+.+.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999985
No 263
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.11 E-value=0.00025 Score=50.85 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027757 41 EFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~ 61 (219)
-++++|++|||||||++.+.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHcc
Confidence 588999999999999998654
No 264
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.08 E-value=0.00027 Score=53.03 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 265
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.05 E-value=0.00031 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999885
No 266
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.05 E-value=0.0003 Score=51.66 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++||||||+++.|.+.
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999985
No 267
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.04 E-value=0.00032 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.684 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++||||||+++.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999875
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.04 E-value=0.00035 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|||||||++.+.|-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999995
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.02 E-value=0.00035 Score=51.62 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|+.|||||||++.|.+.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999885
No 270
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.02 E-value=0.00034 Score=54.25 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999995
No 271
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.02 E-value=0.00034 Score=50.79 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027757 41 EFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~ 61 (219)
.++|+|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999986
No 272
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.01 E-value=0.00036 Score=52.02 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999995
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.01 E-value=0.00042 Score=49.22 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=18.7
Q ss_pred CeEEEEcCCCCCHHHHHHHH
Q 027757 40 PEFAILGRSNVGKSSLINAL 59 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l 59 (219)
..|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.00 E-value=0.00039 Score=52.69 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 7899999999999999999995
No 275
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.99 E-value=0.00041 Score=52.77 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999985
No 276
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.99 E-value=0.00037 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999995
No 277
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.99 E-value=0.00037 Score=53.73 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999995
No 278
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.99 E-value=0.00041 Score=52.91 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999996
No 279
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.97 E-value=0.00038 Score=53.51 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|++|+|||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 6999999999999999999984
No 280
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.97 E-value=0.00044 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 281
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.97 E-value=0.00048 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+.++|+|++|+|||||++++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 467999999999999999999985
No 282
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.96 E-value=0.00048 Score=48.96 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.|+|.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 283
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.96 E-value=0.00054 Score=50.26 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|+|++||||||+++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999874
No 284
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.96 E-value=0.0004 Score=53.25 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 285
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.95 E-value=0.00043 Score=54.39 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|++|+|||||++.|.+-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 47999999999999999999974
No 286
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.94 E-value=0.0037 Score=51.61 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.5
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHh
Q 027757 38 DRPEFAILGRSNVGKSSLINALV 60 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~ 60 (219)
...-|.|+|+.++|||+|+|.|+
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 34567799999999999999665
No 287
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.94 E-value=0.00051 Score=52.13 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHh
Q 027757 39 RPEFAILGRSNVGKSSLINALV 60 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~ 60 (219)
...|+|+|++||||||+++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999999
No 288
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.93 E-value=0.00045 Score=53.17 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 6899999999999999999995
No 289
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.93 E-value=0.00044 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999985
No 290
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.93 E-value=0.00045 Score=52.43 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.93 E-value=0.00049 Score=52.88 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999995
No 292
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.92 E-value=0.00046 Score=52.89 Aligned_cols=22 Identities=18% Similarity=0.468 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999995
No 293
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.92 E-value=0.00039 Score=51.58 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999984
No 294
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.92 E-value=0.00045 Score=51.21 Aligned_cols=66 Identities=6% Similarity=-0.104 Sum_probs=40.7
Q ss_pred cCeEEEEeCCCC-CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-CCCcEEEEEEccc
Q 027757 84 NKSWYIVDLPGY-GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-NNIPLTFVFTKCD 161 (219)
Q Consensus 84 ~~~~~liDtpg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D 161 (219)
.+.++++|||+. ... .....+.. +|.+|+++.++...-..-....+.+.. .+.++.+|+|++|
T Consensus 67 ~yD~viiD~p~~~~~~------------~~~~~l~~---aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~ 131 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE------------DLEALADG---CDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIP 131 (209)
T ss_dssp GCSEEEEEEECCCSSS------------HHHHHHHT---SSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBC
T ss_pred cCCEEEEeCCCCcCcH------------HHHHHHHH---CCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecC
Confidence 357999999985 311 11223333 799999998764222222344455554 3678999999998
Q ss_pred ccc
Q 027757 162 KMK 164 (219)
Q Consensus 162 ~~~ 164 (219)
...
T Consensus 132 ~~~ 134 (209)
T 3cwq_A 132 PYP 134 (209)
T ss_dssp CTT
T ss_pred Ccc
Confidence 643
No 295
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.92 E-value=0.00049 Score=52.52 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999994
No 296
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.91 E-value=0.00056 Score=52.75 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 297
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.90 E-value=0.00054 Score=52.28 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999996
No 298
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.90 E-value=0.00059 Score=50.90 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 299
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.90 E-value=0.00053 Score=53.02 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999995
No 300
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.89 E-value=0.00055 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.89 E-value=0.00064 Score=49.88 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|+|++||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 302
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.88 E-value=0.0006 Score=50.03 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 027757 40 PEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~ 61 (219)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 303
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.88 E-value=0.00089 Score=48.45 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|+|++|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 304
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.87 E-value=0.00033 Score=52.62 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=15.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHh-cC
Q 027757 40 PEFAILGRSNVGKSSLINALV-RK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~-~~ 62 (219)
..++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 368999999999999999999 74
No 305
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.85 E-value=0.00061 Score=52.12 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.85 E-value=0.00057 Score=50.17 Aligned_cols=23 Identities=35% Similarity=0.283 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+||||+.+.|.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999885
No 307
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.84 E-value=0.00055 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|+|++|||||||++.+.+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhh
Confidence 457999999999999999999985
No 308
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.84 E-value=0.00079 Score=48.11 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+||||+.+.|.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46999999999999999999874
No 309
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.83 E-value=0.0003 Score=50.52 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++|+|++|+|||||++.+.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999985
No 310
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.83 E-value=0.0005 Score=49.49 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...++++|++|+|||||+..+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999885
No 311
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.83 E-value=0.00067 Score=48.53 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 027757 40 PEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~ 61 (219)
..|++.|++|+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999987
No 312
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.83 E-value=0.00065 Score=52.35 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
No 313
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.81 E-value=0.0004 Score=54.62 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 47999999999999999999985
No 314
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.81 E-value=0.00072 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999874
No 315
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.81 E-value=0.00071 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+||||+...|.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 316
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.80 E-value=0.00073 Score=51.99 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999996
No 317
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.79 E-value=0.00064 Score=50.68 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|++|+|||||++.+++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999984
No 318
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0041 Score=51.23 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+..|++.||||+|||+|+.++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999985
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.75 E-value=0.0009 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.|+|.|.+||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999874
No 320
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.74 E-value=0.00077 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 6899999999999999999995
No 321
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.74 E-value=0.00092 Score=49.14 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 027757 40 PEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~ 61 (219)
..|+|+|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 322
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.73 E-value=0.00092 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.|+|.|++|+||||+++.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 323
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.72 E-value=0.001 Score=49.31 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999653
No 324
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.72 E-value=0.00087 Score=50.62 Aligned_cols=21 Identities=14% Similarity=0.392 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027757 41 EFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~ 61 (219)
-++|+|++|||||||++.+++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 325
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.71 E-value=0.00089 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 6899999999999999999995
No 326
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.70 E-value=0.0011 Score=47.79 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+++|++|+||||+.+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 327
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.70 E-value=0.001 Score=49.00 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+||||+++.|.+.
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999985
No 328
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.70 E-value=0.00069 Score=54.62 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 348999999999999999999985
No 329
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.69 E-value=0.0011 Score=47.83 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|.|++||||||+++.|...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
No 330
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.69 E-value=0.0011 Score=47.39 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+.++|+|++|+|||||+++|...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999874
No 331
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.69 E-value=0.00065 Score=47.58 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...++|+|++|+|||||++.+.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999985
No 332
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.68 E-value=0.00086 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|++|+|||||++.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999985
No 333
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.68 E-value=0.001 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+|+|+|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999653
No 334
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.68 E-value=0.00095 Score=53.71 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 6899999999999999999985
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.68 E-value=0.00088 Score=50.81 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|+.|||||||++.|.+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 336
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.68 E-value=0.0016 Score=47.71 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
....|+|.|++|+||||+.+.|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999764
No 337
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.67 E-value=0.0011 Score=52.38 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=22.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++-|+|+|++|||||||++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998764
No 338
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.67 E-value=0.00086 Score=53.90 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|++|+|||||++.+++.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999885
No 339
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.67 E-value=0.00096 Score=53.55 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
No 340
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.66 E-value=0.0016 Score=46.80 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|++.|++|+||||+.+.|...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 341
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.66 E-value=0.0009 Score=53.24 Aligned_cols=23 Identities=17% Similarity=0.405 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|++|+|||||++.+.+-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999985
No 342
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.64 E-value=0.001 Score=53.83 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 6899999999999999999995
No 343
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.64 E-value=0.0012 Score=51.53 Aligned_cols=26 Identities=15% Similarity=-0.013 Sum_probs=22.4
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.....|+|+|++|+|||||++.|.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999998874
No 344
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.64 E-value=0.0012 Score=47.83 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|++.|.+|+||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 345
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.64 E-value=0.001 Score=53.45 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 6899999999999999999985
No 346
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.64 E-value=0.0016 Score=47.73 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|.|.+|+||||+.+.|...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 347
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.63 E-value=0.0011 Score=53.45 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 6899999999999999999995
No 348
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.60 E-value=0.0013 Score=47.33 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 027757 40 PEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~ 61 (219)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999999975
No 349
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.60 E-value=0.0011 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 6899999999999999999995
No 350
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.59 E-value=0.0012 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 6899999999999999999985
No 351
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.58 E-value=0.0021 Score=50.31 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=17.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHh
Q 027757 39 RPEFAILGRSNVGKSSLINALV 60 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~ 60 (219)
...|+|.|..|+||||+.-.|.
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA 62 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLS 62 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHH
Confidence 3457778999999999887665
No 352
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.58 E-value=0.0012 Score=47.12 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+|+|+|++|+||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999999864
No 353
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.57 E-value=0.0013 Score=47.93 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
....|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3467999999999999999999874
No 354
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.56 E-value=0.0014 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+++|++||||||++..|...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999864
No 355
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.56 E-value=0.0018 Score=47.28 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|.|++||||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 356
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.56 E-value=0.0012 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4999999999999999999985
No 357
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.56 E-value=0.0015 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+|+++|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 358
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.55 E-value=0.0012 Score=48.39 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|+|++|+|||||++.|.+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999873
No 359
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.55 E-value=0.0012 Score=52.03 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|+|+.|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999884
No 360
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.54 E-value=0.0019 Score=46.90 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|.|++|+||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 361
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.53 E-value=0.0019 Score=47.58 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|.|.+||||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 362
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0069 Score=49.87 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+..|++.||||+|||+|+.++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999985
No 363
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.53 E-value=0.0016 Score=49.46 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..+|+|.|++||||||+.+.|...
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 364
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.52 E-value=0.011 Score=45.77 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...+++.|++|+|||++++++.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999885
No 365
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.52 E-value=0.002 Score=49.16 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHh
Q 027757 39 RPEFAILGRSNVGKSSLINALV 60 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~ 60 (219)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3589999999999999999999
No 366
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.51 E-value=0.0013 Score=53.14 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|++|+||||+++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999984
No 367
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.0085 Score=49.27 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+..|++.||||+|||+|+.++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999999985
No 368
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.51 E-value=0.002 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|.|.+|+||||+.+.|...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999753
No 369
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.51 E-value=0.019 Score=43.97 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...+++.|++|+|||+++.++...
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999874
No 370
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.50 E-value=0.0018 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 371
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.50 E-value=0.002 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-.++++|+.||||||+++.+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 347999999999999999999864
No 372
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.50 E-value=0.0016 Score=47.16 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|.|.+||||||+.+.|...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998753
No 373
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.49 E-value=0.0014 Score=53.28 Aligned_cols=23 Identities=39% Similarity=0.722 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|++|+|||||++.+.|-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 36899999999999999999985
No 374
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.49 E-value=0.0017 Score=48.05 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 375
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.48 E-value=0.0014 Score=49.78 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++|+|++|+|||||++.+.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999985
No 376
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.47 E-value=0.0019 Score=48.22 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|.|++||||||+.+.|...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999753
No 377
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.47 E-value=0.0015 Score=49.90 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.|+|+|++|+|||||...|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999999864
No 378
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.46 E-value=0.0014 Score=55.15 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|++||||||+++.+++-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5999999999999999999984
No 379
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.46 E-value=0.0018 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.157 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|.|++||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 380
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.45 E-value=0.002 Score=46.79 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|.|++|+||||+.+.|...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999764
No 381
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.45 E-value=0.00099 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 6899999999999999999995
No 382
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.45 E-value=0.0023 Score=47.58 Aligned_cols=23 Identities=17% Similarity=0.370 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998764
No 383
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.45 E-value=0.0017 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+.|+|+|.+|+||||+...|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999998764
No 384
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.44 E-value=0.012 Score=48.25 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...-|+++|.+||||||+.++|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456889999999999999999875
No 385
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.44 E-value=0.0018 Score=49.33 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.8
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.....|+|.|++||||||+.+.|...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998763
No 386
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.43 E-value=0.052 Score=41.00 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
....+++.|++|+|||+++.++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3456999999999999999999874
No 387
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.42 E-value=0.0015 Score=53.59 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|++|+|||||++.+++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999985
No 388
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.42 E-value=0.0021 Score=45.44 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
No 389
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.40 E-value=0.0087 Score=48.71 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+..|++.||||+|||.|+.++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 456999999999999999999985
No 390
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.40 E-value=0.0024 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|.|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 391
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.40 E-value=0.0017 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++++|+.|+||||++..+.+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999999874
No 392
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.39 E-value=0.0026 Score=47.42 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-|+|+|+|||||+|.+..|...
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3667999999999999999865
No 393
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.38 E-value=0.0014 Score=49.26 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-|+|.|+.||||||+++.|.+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999884
No 394
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.36 E-value=0.00071 Score=49.94 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.|+|.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 395
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.35 E-value=0.0021 Score=46.62 Aligned_cols=22 Identities=27% Similarity=0.288 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.|+|.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 396
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.34 E-value=0.0023 Score=45.39 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|.|.+|+||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998764
No 397
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.33 E-value=0.0027 Score=45.40 Aligned_cols=24 Identities=21% Similarity=0.609 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...++|.|++|+|||++++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456999999999999999999875
No 398
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.33 E-value=0.0021 Score=46.20 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=19.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027757 41 EFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~ 61 (219)
-.+|+|+.|+|||||+.++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999876
No 399
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.33 E-value=0.002 Score=47.93 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-++|+|++|+|||||+..+++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 400
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.33 E-value=0.00096 Score=53.55 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999995
No 401
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.32 E-value=0.0026 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.|+|.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 402
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.32 E-value=0.0014 Score=51.86 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+.++|+|+.|||||||++.+.+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 356899999999999999999975
No 403
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.32 E-value=0.016 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|++.|++|+|||+|+.++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999999985
No 404
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.31 E-value=0.0022 Score=46.28 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+++|.+|+||||+++.|...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999999875
No 405
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.30 E-value=0.002 Score=51.26 Aligned_cols=23 Identities=17% Similarity=0.419 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999999985
No 406
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.29 E-value=0.0027 Score=47.37 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 407
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.29 E-value=0.0021 Score=49.59 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 4999999999999999999985
No 408
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.29 E-value=0.0023 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+++|.+|+||||+.+.|.+.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 409
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.29 E-value=0.0019 Score=53.72 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+++|+|+.|+|||||++.|++-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 57999999999999999999985
No 410
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.27 E-value=0.0021 Score=46.13 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=16.9
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999754
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.27 E-value=0.0029 Score=47.70 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|.|++|+||||+.+.|...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999853
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.26 E-value=0.0027 Score=47.09 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhc
Q 027757 39 RPEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~ 61 (219)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 413
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.24 E-value=0.003 Score=46.90 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|.+||||||+.+.|...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999753
No 414
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.22 E-value=0.0018 Score=49.32 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+++|++||||||+...|...
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999874
No 415
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.21 E-value=0.0024 Score=48.66 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+||||+.+.|.+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999763
No 416
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.20 E-value=0.0024 Score=49.74 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 6899999999999999999985
No 417
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.20 E-value=0.003 Score=47.28 Aligned_cols=41 Identities=15% Similarity=-0.047 Sum_probs=28.5
Q ss_pred EEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757 124 GVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK 164 (219)
Q Consensus 124 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~ 164 (219)
.-++++|-.+..+....+.+..+...++|+++++-..|-..
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 34788888775544444556665556899999999888543
No 418
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.016 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+..|++.||||+|||+|+.++.+.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 457999999999999999999985
No 419
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.18 E-value=0.0037 Score=47.57 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...+++.|++|+|||++++++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999999874
No 420
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.17 E-value=0.0042 Score=46.63 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|+|.+|+||||+.+.|...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999764
No 421
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.17 E-value=0.0028 Score=50.71 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-+++|+|+.|+|||||++.+.+.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999996
No 422
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.16 E-value=0.0037 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 027757 38 DRPEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~ 61 (219)
....|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999973
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.14 E-value=0.0029 Score=46.71 Aligned_cols=21 Identities=19% Similarity=0.104 Sum_probs=19.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027757 41 EFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~ 61 (219)
.++|+|++|+|||||+..+.+
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 424
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.12 E-value=0.019 Score=48.46 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..-++|.|++|+|||+++.++...
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 425
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.11 E-value=0.0029 Score=50.81 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++++|+.|+||||++..+.+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHhh
Confidence 36899999999999999999874
No 426
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.08 E-value=0.0032 Score=47.20 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-++|+|++|+|||||+..+++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 6899999999999999999984
No 427
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.08 E-value=0.0032 Score=54.00 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 37999999999999999999985
No 428
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.05 E-value=0.0031 Score=52.59 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.+-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 47899999999999999999974
No 429
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.05 E-value=0.0036 Score=53.12 Aligned_cols=22 Identities=27% Similarity=0.478 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|.
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999995
No 430
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.05 E-value=0.0032 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.|.+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHHH
Confidence 46899999999999999999864
No 431
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.03 E-value=0.0044 Score=43.82 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.|+|.|.+||||||+.+.|...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998763
No 432
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.03 E-value=0.0035 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+++|.+|+||||+++.|.+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 433
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.02 E-value=0.0034 Score=44.79 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...++|.|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999875
No 434
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.01 E-value=0.0036 Score=53.64 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999985
No 435
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.00 E-value=0.0047 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++|.|++|+|||+|+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999999875
No 436
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.00 E-value=0.0038 Score=46.91 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|.|++||||||+++.|...
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46999999999999999999885
No 437
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.97 E-value=0.0039 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.543 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
+++|+|+.|+|||||++.+.+.
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 7999999999999999999996
No 438
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.96 E-value=0.0052 Score=45.80 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...++|.|++|+|||+|+..+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 439
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.94 E-value=0.0048 Score=43.03 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=18.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027757 41 EFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~ 61 (219)
-.+|+|+.|+||||++.++.-
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999874
No 440
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.91 E-value=0.004 Score=50.39 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-.++|+|++|+|||||++.+.+.
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999874
No 441
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.90 E-value=0.0032 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|-
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999985
No 442
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.89 E-value=0.0045 Score=49.90 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=18.3
Q ss_pred eEEEEcCCCCCHHHHHHHHh
Q 027757 41 EFAILGRSNVGKSSLINALV 60 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~ 60 (219)
-.+|+|+.|||||||+++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999987
No 443
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.89 E-value=0.0044 Score=53.36 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|.
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHhcC
Confidence 6999999999999999999985
No 444
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.89 E-value=0.0042 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|||||||++.+.|.
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5899999999999999999995
No 445
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.88 E-value=0.0035 Score=53.93 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=21.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|-
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999999985
No 446
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.025 Score=46.83 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+..|++.|++|+|||+|+.++.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3557999999999999999999985
No 447
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.86 E-value=0.0053 Score=44.80 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
....|+|.|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999864
No 448
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.85 E-value=0.0057 Score=44.68 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.|+|.|++|+||||+.+.|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999763
No 449
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.84 E-value=0.027 Score=45.08 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|.|++|+|||+|+.++...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999874
No 450
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.82 E-value=0.0054 Score=44.94 Aligned_cols=23 Identities=39% Similarity=0.429 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+|||||...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999986
No 451
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.80 E-value=0.003 Score=54.11 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|+.|+|||||++.+.|-
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 37999999999999999999985
No 452
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.79 E-value=0.0067 Score=47.29 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+.-+++.|++|+|||+|+.++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 346777899999999999999875
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.77 E-value=0.0055 Score=47.70 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=20.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhc
Q 027757 40 PEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~ 61 (219)
..|+++|++|+||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999986
No 454
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.76 E-value=0.0054 Score=52.81 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|.
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 6999999999999999999995
No 455
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.76 E-value=0.0038 Score=53.59 Aligned_cols=23 Identities=39% Similarity=0.599 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|++|+|||||++.+.+-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999985
No 456
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.76 E-value=0.0075 Score=45.31 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhc
Q 027757 38 DRPEFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~ 61 (219)
....|+|+|++|+||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999886
No 457
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.74 E-value=0.022 Score=46.09 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|+|.|++|+|||+|+.++...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999764
No 458
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.72 E-value=0.0057 Score=51.87 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=20.7
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 459
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.72 E-value=0.0054 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
--++|+|++|+|||||+..+++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999873
No 460
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.71 E-value=0.0073 Score=46.54 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...++|.|++|+|||+|+.++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999875
No 461
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.67 E-value=0.0065 Score=51.55 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999995
No 462
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.67 E-value=0.006 Score=45.26 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-++|.|++|+|||+++..+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 463
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.67 E-value=0.0079 Score=45.16 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...+++|+|++||||||+...|...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998764
No 464
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.66 E-value=0.0062 Score=44.58 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|.|++|+|||+++..+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999874
No 465
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.62 E-value=0.0045 Score=48.23 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+.|+|.|++||||||+.+.|...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998763
No 466
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.61 E-value=0.0048 Score=45.49 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.2
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+++.|++|+|||+++.++...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999988887763
No 467
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.59 E-value=0.0076 Score=41.66 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|.|++|+|||++..++...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 45999999999999999999875
No 468
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.58 E-value=0.0064 Score=47.52 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|++.|++|+|||+|++++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 346999999999999999999985
No 469
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.58 E-value=0.0092 Score=47.74 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=21.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 37 DDRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+..+.|+++|++|+||||+...|.+.
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999987764
No 470
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.56 E-value=0.0077 Score=47.35 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+-|+|+|++|+|||||...|...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 46889999999999999999875
No 471
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.56 E-value=0.0077 Score=48.48 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCCCCHHHHHHHHh
Q 027757 37 DDRPEFAILGRSNVGKSSLINALV 60 (219)
Q Consensus 37 ~~~~~v~i~G~~g~GKSslin~l~ 60 (219)
....||+|+|.+|+|||||+..+-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 446899999999999999998763
No 472
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.56 E-value=0.0076 Score=51.89 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|.
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999995
No 473
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.55 E-value=0.01 Score=46.24 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
....++|.|++|+|||+++.++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999988764
No 474
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.54 E-value=0.0071 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.1
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+++.|++|+||||+++.+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999884
No 475
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.50 E-value=0.0083 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999875
No 476
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.47 E-value=0.0093 Score=47.36 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
+.+++.|++|+||||++..+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999999885
No 477
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.47 E-value=0.0073 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-++|.|++|+|||+|++++.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999874
No 478
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.47 E-value=0.0082 Score=47.78 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+|||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999998875
No 479
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.47 E-value=0.0088 Score=47.52 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+|||||...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999986
No 480
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.47 E-value=0.0085 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+|||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999875
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.46 E-value=0.0086 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.6
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.++|+|+.|+|||||++.+.|-
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4899999999999999999996
No 482
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.43 E-value=0.0089 Score=44.84 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-++|+|++|+|||||+..++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998877653
No 483
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.43 E-value=0.0078 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999874
No 484
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.42 E-value=0.0011 Score=49.85 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-++|+|+.|+|||||++++.+-
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999985
No 485
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.40 E-value=0.005 Score=57.76 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-+|+|+|++|+|||||++.|.+-
T Consensus 1106 e~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1106 QTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp CEEEEECSTTSSTTSHHHHHTTS
T ss_pred CEEEEECCCCChHHHHHHHHhcC
Confidence 38999999999999999999984
No 486
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.39 E-value=0.065 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.2
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..++|.|++|+|||||++.+...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999875
No 487
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.38 E-value=0.0082 Score=48.04 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=20.4
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
-+.|+|++|+|||||+..+++.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999985
No 488
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.35 E-value=0.012 Score=46.23 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|+|||||...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 46889999999999999999865
No 489
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.31 E-value=0.032 Score=49.53 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 38 DRPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 38 ~~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+..|++.|++|+|||+|++++.+.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999985
No 490
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.28 E-value=0.011 Score=42.31 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
.-|++.|++|+||||+.-.|..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 36899999999999999999886
No 491
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.24 E-value=0.012 Score=43.27 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=18.5
Q ss_pred eEEEEcCCCCCHHHHHHHHhc
Q 027757 41 EFAILGRSNVGKSSLINALVR 61 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~ 61 (219)
-.+|+|+.|+||||++.++.-
T Consensus 25 ~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 578899999999999998763
No 492
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.15 E-value=0.013 Score=43.24 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|.|++|+||||+...|...
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999988763
No 493
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.13 E-value=0.014 Score=45.30 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...+++.|++|+|||+++.++...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999874
No 494
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.05 E-value=0.017 Score=45.77 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..+++.|++|+||||++..+.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999999875
No 495
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.03 E-value=0.0077 Score=51.20 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
..|+|+|++|||||||.+.|.+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHh
Confidence 46899999999999999999985
No 496
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.02 E-value=0.017 Score=45.00 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=20.3
Q ss_pred eEEEEcCCCCCHHHHHHHHhcC
Q 027757 41 EFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 41 ~v~i~G~~g~GKSslin~l~~~ 62 (219)
.+++.|++|+|||+++..+.+.
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHHH
Confidence 5999999999999999999875
No 497
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.02 E-value=0.012 Score=55.27 Aligned_cols=23 Identities=39% Similarity=0.641 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Q 027757 40 PEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 40 ~~v~i~G~~g~GKSslin~l~~~ 62 (219)
-.++|+|++|+|||||++.+.+-
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~ 467 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRY 467 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTS
T ss_pred cEEEEEecCCCcHHHHHHHhccc
Confidence 47999999999999999999985
No 498
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.01 E-value=0.017 Score=45.54 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...|++.|++|+|||+|+.++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999999874
No 499
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.01 E-value=0.02 Score=44.95 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757 39 RPEFAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 39 ~~~v~i~G~~g~GKSslin~l~~~ 62 (219)
...+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998874
No 500
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.00 E-value=0.017 Score=41.62 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcC
Q 027757 42 FAILGRSNVGKSSLINALVRK 62 (219)
Q Consensus 42 v~i~G~~g~GKSslin~l~~~ 62 (219)
++|+|.+++|||+|...|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999863
Done!