RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 027757
(219 letters)
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 278 bits (712), Expect = 7e-96
Identities = 63/208 (30%), Positives = 94/208 (45%), Gaps = 5/208 (2%)
Query: 11 GPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSK 70
GP + + + F + +D P +PE A GRSN GKS+ IN L +K LA SK
Sbjct: 1 GPGSMAFLLHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASK 60
Query: 71 KPGKTQLINHFLVNKSW----YIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVL 126
PG+TQ IN+F V + ++VDLPGYG+A+ P + W Y R L G++
Sbjct: 61 TPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMI 120
Query: 127 LLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENI-KSFQQLIREN 185
L++DA P ++D W P+ + TKCDK+ + KS
Sbjct: 121 LMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180
Query: 186 YPHHPPWIMTSSVTGLGRDELLLHMSQL 213
Y + S++ G D+ +
Sbjct: 181 YAGKLTVQLFSALKRTGLDDAHALIESW 208
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 274 bits (704), Expect = 5e-95
Identities = 71/198 (35%), Positives = 108/198 (54%), Gaps = 5/198 (2%)
Query: 18 QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
++ + E V S+ + + P+ PE A+ GRSNVGKSS IN+L+ +K LA TS KPGKTQ
Sbjct: 2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61
Query: 78 INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
+N +++N + VD+PGYGFAK R W + Y RE L V+ ++D P
Sbjct: 62 LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121
Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
D+ +L IP+ + TK DK+ KG+ D++ K +Q + + I+ SS
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKADKIP--KGKW-DKHAKVVRQTLNIDP--EDELILFSS 176
Query: 198 VTGLGRDELLLHMSQLRN 215
T G+DE + ++ N
Sbjct: 177 ETKKGKDEAWGAIKKMIN 194
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 268 bits (688), Expect = 2e-92
Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 4/196 (2%)
Query: 18 QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
++ FV S+ + P D E A GRSN GKSS +N L +K LA TSK PG+TQL
Sbjct: 5 NYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64
Query: 78 INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
IN F V +VDLPGYG+A+ P+ + W Y R+SL G+++L+D P +
Sbjct: 65 INLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD 124
Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
+D W +NI + + TK DK+ G R + ++ + + SS
Sbjct: 125 LDQQMIEWAVDSNIAVLVLLTKADKLA--SGAR-KAQLNMVREAVLA-FNGDVQVETFSS 180
Query: 198 VTGLGRDELLLHMSQL 213
+ G D+L +
Sbjct: 181 LKKQGVDKLRQKLDTW 196
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 267 bits (685), Expect = 3e-92
Identities = 88/195 (45%), Positives = 113/195 (57%), Gaps = 6/195 (3%)
Query: 19 IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78
I++VE VK + D P + E A +GRSNVGKSSL+NAL +K +A SK PGKT+ I
Sbjct: 3 IRDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSI 61
Query: 79 NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKI 138
N +LVN +Y VDLPGYG+AK RM W + YF NR SL V LL+D +PPQ
Sbjct: 62 NFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDS 121
Query: 139 DLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSV 198
DL W+ NIP T V TK DK+K R + ++ +++ + I TSSV
Sbjct: 122 DLMMVEWMKSLNIPFTIVLTKMDKVK--MSER-AKKLEEHRKVFSKYG--EYTIIPTSSV 176
Query: 199 TGLGRDELLLHMSQL 213
TG G ELL +S L
Sbjct: 177 TGEGISELLDLISTL 191
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 167 bits (426), Expect = 6e-53
Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 22/182 (12%)
Query: 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK 99
GRSNVGKS+LI L KK K+PG T+ I + I+D+PG+GF
Sbjct: 2 ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMM 58
Query: 100 APDVTRMD-WSSFTKGYFLNR-ESLVGVLLLIDASVPPQ-----------KIDLDCANWL 146
+ + + +++ +L++D P+ ID++ +L
Sbjct: 59 GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 118
Query: 147 GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT-SSVTGLGRDE 205
+IP K DK+K E I + + S+ G +
Sbjct: 119 RELDIPTIVAVNKLDKIK-----NVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER 173
Query: 206 LL 207
L
Sbjct: 174 LK 175
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 101 bits (253), Expect = 2e-25
Identities = 38/190 (20%), Positives = 56/190 (29%), Gaps = 25/190 (13%)
Query: 30 RAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGK---TQLINHFLVNK- 85
A A+ G + GKSS IN L + K G T + +
Sbjct: 60 DALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNI 119
Query: 86 -SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN 144
+ DLPG G P Y + +I ++ +K D+D A
Sbjct: 120 PNVVFWDLPGIGSTNFPP----------DTYLEKMKFYEYDFFIIISATRFKKNDIDIAK 169
Query: 145 WLGRNNIPLTFVFTKCDKMKVAKGRRP--DENIKSFQQLIRENY--------PHHPPWIM 194
+ FV TK D + + + Q IR N PP +
Sbjct: 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL 229
Query: 195 TSSVTGLGRD 204
S+ D
Sbjct: 230 LSNKNVCHYD 239
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 71.2 bits (175), Expect = 9e-15
Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 43/206 (20%)
Query: 16 HSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT 75
+ + + R + GR NVGKSS +NALV + +++ S G T
Sbjct: 11 VPRGSHMLEDPRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQN-VSIVSDYAGTT 69
Query: 76 --------------QLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRES 121
+ +VD PG R++ + R
Sbjct: 70 TDPVYKSMELHPIGPVT----------LVDTPGLDDVGELGRLRVEKARRV----FYRAD 115
Query: 122 LVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL 181
+L+ D++ P + D N IP V K D + E + + L
Sbjct: 116 C--GILVTDSAPTPY--EDDVVNLFKEMEIPFVVVVNKIDVLG--------EKAEELKGL 163
Query: 182 IRENYPHHPPWIMTSSVTGLGRDELL 207
Y ++ S++ G D++
Sbjct: 164 YESRYEA--KVLLVSALQKKGFDDIG 187
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 61.3 bits (150), Expect = 2e-11
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 47/186 (25%)
Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKP--------------GKTQLINHFLVNKSWY 88
AI+G+ NVGKS+L+N L+ K +++ S K + Q+I
Sbjct: 14 AIVGKPNVGKSTLLNNLLGTK-VSIISPKAGTTRMRVLGVKNIPNEAQII---------- 62
Query: 89 IVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR---ESLVGV---LLLIDASVPPQKID-LD 141
+D P G + + G+ + +SL L +IDA+ + D
Sbjct: 63 FLDTP--GIYEPKKSDVL-------GHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEI 113
Query: 142 CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGL 201
N++ N P+ V K DK+ P +N+ I + +P + S++ G
Sbjct: 114 YQNFIKPLNKPVIVVINKIDKIG------PAKNVLPLIDEIHKKHPELTEIVPISALKGA 167
Query: 202 GRDELL 207
DEL+
Sbjct: 168 NLDELV 173
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 57.5 bits (140), Expect = 4e-10
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 59/189 (31%)
Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKP-------------GKTQLINHFLVNKSWYI 89
AI+G+ NVGKS+L+N L+ K +A S +P G+ Q++
Sbjct: 11 AIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIV----------F 59
Query: 90 VDLPGYGFAKAPDVTRMDWSSFTKGYFLNR---ESLVGV---LLLIDASVPPQKIDLDCA 143
VD PG + G F+++ E+L V + ++D PP D A
Sbjct: 60 VDTPGLHKPM----DAL-------GEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVA 108
Query: 144 NWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW---IMTSSV 198
L +P+ V K D K P+E +K++ +L+ P M S++
Sbjct: 109 RALKPLVGKVPILLVGNKLDAAK-----YPEEAMKAYHELL--------PEAEPRMLSAL 155
Query: 199 TGLGRDELL 207
EL
Sbjct: 156 DERQVAELK 164
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 54.8 bits (133), Expect = 3e-09
Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 48/184 (26%)
Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKP-------------GKTQLINHFLVNKSWYI 89
AI+GR NVGKS+L+N L+ +K +++TS+K G Q I
Sbjct: 12 AIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAI----------Y 60
Query: 90 VDLPGYGFAKAPDVTRMDWSSFTKGYFLNR---ESLVGV---LLLIDASVPPQKIDLDCA 143
VD P G + +N+ S+ V + +++ + D
Sbjct: 61 VDTP--GLHMEEK-RAI-------NRLMNKAASSSIGDVELVIFVVEGTRWTPD-DEMVL 109
Query: 144 NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGR 203
N L P+ K D ++ ++ Q + + S+ TGL
Sbjct: 110 NKLREGKAPVILAVNKVDNVQ------EKADLLPHLQFLASQMNFL-DIVPISAETGLNV 162
Query: 204 DELL 207
D +
Sbjct: 163 DTIA 166
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 54.2 bits (131), Expect = 4e-09
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
I+G NVGKS+LIN L +K +A T +PG T V K ++D PG
Sbjct: 125 IIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGKELELLDTPG 174
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 52.5 bits (127), Expect = 2e-08
Identities = 38/199 (19%), Positives = 73/199 (36%), Gaps = 55/199 (27%)
Query: 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT-----QLINHFLVNKSWYI 89
++ +F ++GR NVGKSSL+NA++ +E + S G T + + + I
Sbjct: 171 YNEEVIQFCLIGRPNVGKSSLVNAML-GEERVIVSNVAGTTRDAVDTSFTYN--QQEFVI 227
Query: 90 VDLPG-------------YGFAKAP------DVTRMDWSSFTKGYFLNRESLVGVLLLID 130
VD G Y +A +V V +++D
Sbjct: 228 VDTAGMRKKGKVYETTEKYSVLRALKAIDRSEV---------------------VAVVLD 266
Query: 131 ASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH-- 188
+ D A + + V K D + + + +K F++ IR+++
Sbjct: 267 GEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD-----KDESTMKEFEENIRDHFQFLD 321
Query: 189 HPPWIMTSSVTGLGRDELL 207
+ P + S++T L+
Sbjct: 322 YAPILFMSALTKKRIHTLM 340
Score = 51.3 bits (124), Expect = 5e-08
Identities = 38/179 (21%), Positives = 67/179 (37%), Gaps = 35/179 (19%)
Query: 39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT---QLINHFLVNKSWYIVDLPGY 95
+P AI+GR NVGKS++ N + ++ ++ PG T + +N + ++D G
Sbjct: 3 KPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61
Query: 96 GFAKAPDVTRMDWSSFTKGYFLNRESLVG------VLLLIDASVPPQKIDLDCANWLGRN 149
P + ++ +++ + ++ +++ D + A L R
Sbjct: 62 DIGDEPFLAQIR-----------QQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT 110
Query: 150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDELL 207
P+ K D NI F L E YP S GLG +LL
Sbjct: 111 KKPVVLAVNKLD------NTEMRANIYDFYSLGFGEPYP-------ISGTHGLGLGDLL 156
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 51.0 bits (122), Expect = 5e-08
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 28/155 (18%)
Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAK 99
+LG+ VGKSS +N+L+ ++ S + + I+D PG A
Sbjct: 40 LVLGKGGVGKSSTVNSLIGEQV-VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98
Query: 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP---------QKIDLDCANWLGRNN 150
+ ++ FL ++ +L + V I +
Sbjct: 99 YVNHQALE----LIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKT 154
Query: 151 IPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185
+ V T PDE S++ +
Sbjct: 155 L---LVLTHAQFSP------PDE--LSYETFSSKR 178
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 50.3 bits (121), Expect = 7e-08
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
I+G N GKS++IN L K+ + +PG T+ I F + I+D PG
Sbjct: 104 IVGVPNTGKSTIINKLKGKR-ASSVGAQPGITKGIQWFSLENGVKILDTPG 153
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 49.9 bits (119), Expect = 1e-07
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 44 ILGRSNVGKSSLINALVR----KKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
++G +NVGKS+ IN ++ K + TS PG T + + + D PG
Sbjct: 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPG 221
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 49.8 bits (120), Expect = 1e-07
Identities = 47/200 (23%), Positives = 70/200 (35%), Gaps = 56/200 (28%)
Query: 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT-----QLINHFLVNKSWYI 89
D + AI+GR NVGKS+L NA++ KE AL S PG T + + +
Sbjct: 176 EITDAIKVAIVGRPNVGKSTLFNAIL-NKERALVSPIPGTTRDPVDDEVFID--GRKYVF 232
Query: 90 VDLPG--------------YGFAKA------PDVTRMDWSSFTKGYFLNRESLVGVLLLI 129
VD G Y + DV V++++
Sbjct: 233 VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADV---------------------VVIVL 271
Query: 130 DASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189
DA+ + D A + R VF K D + ++ F +L RE
Sbjct: 272 DATQGITRQDQRMAGLMERRGRASVVVFNKWDLVV-----HREKRYDEFTKLFREKLYFI 326
Query: 190 P--PWIMTSSVTGLGRDELL 207
P I TS+ G D ++
Sbjct: 327 DYSPLIFTSADKGWNIDRMI 346
Score = 49.0 bits (118), Expect = 3e-07
Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 40/182 (21%)
Query: 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT---QLINHFLVNKSWYIVDLPGYG 96
I+GR NVGKS+L N LV+KK+ A+ + G T K++ +VD G
Sbjct: 2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVF 60
Query: 97 FAKAPDVTRMDWSSFTKGYFLNR----------ESLVGVLLLIDASVPPQKIDLDCANWL 146
+ + E+ + VL ++D K D A++L
Sbjct: 61 DN-------------PQDIISQKMKEVTLNMIREADL-VLFVVDGKRGITKEDESLADFL 106
Query: 147 GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDE 205
++ + V K + ++ E L E P S+ + D
Sbjct: 107 RKSTVDTILVANKAENLR----EFEREVKPELYSLGFGEPIP-------VSAEHNINLDT 155
Query: 206 LL 207
+L
Sbjct: 156 ML 157
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 48.3 bits (116), Expect = 2e-07
Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 36/178 (20%)
Query: 40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT---QLINHFLVNKSWYIVDLPGYG 96
+ I+GR NVGKSSL N L++K+ A+ + PG T + + +VD G
Sbjct: 2 HKVVIVGRPNVGKSSLFNRLLKKRS-AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60
Query: 97 FAKAPDVTRMDWSSFTKGYFLNRESLVG------VLLLIDASVPPQKIDLDCANWLGRNN 150
+ ++ + VL +D + D + A +L R
Sbjct: 61 SGDKWE-KKIQ-----------EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKG 108
Query: 151 IPLTFVFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDELL 207
P+ V TK D + + + L + P TSS G +ELL
Sbjct: 109 KPVILVATKVD------DPKHELYLGPLYGLGFGDPIP-------TSSEHARGLEELL 153
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 46.9 bits (111), Expect = 2e-06
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 44 ILGRSNVGKSSLINALV-----RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY 95
++G +NVGKS+ IN ++ + + TS PG T + +++ + D PG
Sbjct: 165 VVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 46.3 bits (109), Expect = 2e-06
Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 36/182 (19%)
Query: 41 EFAIL--GRSNVGKSSLINALVRKKELALTSKKPGK-----------TQLINHFLVNKSW 87
EF ++ G S +GKS+LIN+L + P LI V
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 88 YIVDLPGYGFAKAPDVTRMDWSSFTKGYF---LNRESL------------VGVLLLIDAS 132
IVD PG+G A + F LN ES + + +
Sbjct: 68 TIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 127
Query: 133 VPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192
+ +D++ L + + + K D + P+E + F++ I + H
Sbjct: 128 HGLKPLDIEFMKRLH-EKVNIIPLIAKADTLT------PEE-CQQFKKQIMKEIQEHKIK 179
Query: 193 IM 194
I
Sbjct: 180 IY 181
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 45.2 bits (107), Expect = 5e-06
Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 20/188 (10%)
Query: 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-KSWYIVDLPGYG 96
+ P I G NVGKS+L+ AL K + + + F + I+D PG
Sbjct: 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLL 225
Query: 97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS----VPPQKIDLDCANWLGR-NNI 151
+ ++ + +L ++ + D S P ++ G ++
Sbjct: 226 DRPISERNEIEKQAILALRYLGN----LIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDL 281
Query: 152 PLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMS 211
P V K D +ENIK ++ ++E I S++ G G D + +
Sbjct: 282 PFLVVINKIDVA-------DEENIKRLEKFVKE---KGLNPIKISALKGTGIDLVKEEII 331
Query: 212 QLRNYWDQ 219
+ +
Sbjct: 332 KTLRPLAE 339
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 44.8 bits (105), Expect = 7e-06
Identities = 37/201 (18%), Positives = 68/201 (33%), Gaps = 37/201 (18%)
Query: 41 EFAIL--GRSNVGKSSLINALV-----RKKELALTSKKPGKTQLINHFL-------VNKS 86
EF ++ G S +GKS+LIN+L ++ ++ ++K +T I V
Sbjct: 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLR 77
Query: 87 WYIVDLPGYGFAKAPDVTRMDWSSFTKGYF---LNRESLVG------------VLLLIDA 131
+VD PGYG A S+ F L+ ES + +
Sbjct: 78 LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 137
Query: 132 SVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191
+ +D+ + N + + V K D + + + ++ I + H
Sbjct: 138 GHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLT-------LKERERLKKRILDEIEEHNI 189
Query: 192 WIMTSSVTGLGRDELLLHMSQ 212
I DE ++
Sbjct: 190 KIYHLPDAESDEDEDFKEQTR 210
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 44.0 bits (104), Expect = 9e-06
Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 29/201 (14%)
Query: 24 FVKSSGRAKDCPKD------DRPEFAILGRSNVGKSSLINALVRKK----ELALTSKKPG 73
SSGR + + + G NVGKSS +N + R + T+K
Sbjct: 8 HHHSSGRENLYFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL- 66
Query: 74 KTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLL-LIDA 131
+ HF + I+D PG + ++ ++ T L + GV+L +ID
Sbjct: 67 ---YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT---AL--AHINGVILFIIDI 118
Query: 132 SVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186
S + N +N + F K D + K + I +N
Sbjct: 119 SEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKID---KCNMDSLSIDNKLLIKQILDNV 175
Query: 187 PHHPPWIMTSSVTGLGRDELL 207
+ + S++TG+G ++
Sbjct: 176 KNPIKFSSFSTLTGVGVEQAK 196
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 43.3 bits (103), Expect = 9e-06
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKPGKT 75
I GR N GKSSL+NAL +E A+ + G T
Sbjct: 8 VIAGRPNAGKSSLLNALAG-REAAIVTDIAGTT 39
Score = 36.0 bits (84), Expect = 0.004
Identities = 18/92 (19%), Positives = 26/92 (28%), Gaps = 18/92 (19%)
Query: 125 VLLLIDASVPPQKIDLDCANWLGRN---NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL 181
VL ++D + + +P+T V K D G
Sbjct: 87 VLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNG------- 139
Query: 182 IRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
I S+ TG G D L H+ Q
Sbjct: 140 --------HALIRLSARTGEGVDVLRNHLKQS 163
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 43.0 bits (101), Expect = 2e-05
Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 21/187 (11%)
Query: 13 YAGHSQIKEVEFVKSSGRAKDCPKDDRPEF--AILGRSNVGKSSLINALVRKKELALTSK 70
++G + K + ++D ++G+ VGKSS +N+++ ++ S
Sbjct: 11 WSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERV-VSISP 69
Query: 71 KPGKT---QLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLL 127
+ +++ + I+D PG + M + FL +++ +L
Sbjct: 70 FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN--DMALNIIKS--FLLDKTIDVLLY 125
Query: 128 LIDASVPP-QKIDLDCANWLGRNNIPLTF-----VFTKCDKMKVAKGRRPDENI----KS 177
+ +D A + + + T G DE ++
Sbjct: 126 VDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP-PDGLPYDEFFSKRSEA 184
Query: 178 FQQLIRE 184
Q++R
Sbjct: 185 LLQVVRS 191
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 42.5 bits (101), Expect = 5e-05
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKPGKT 75
I+G+ NVGKS+L+N L+ ++ A+ + PG T
Sbjct: 247 VIVGKPNVGKSTLLNRLLN-EDRAIVTDIPGTT 278
Score = 41.0 bits (97), Expect = 2e-04
Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 125 VLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE 184
VL ++DAS P + D + N V K D ++ + I+
Sbjct: 327 VLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINE-----------EEIKN 373
Query: 185 NYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
+ S++ G G ++L + +
Sbjct: 374 KLGTDRHMVKISALKGEGLEKLEESIYRE 402
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 42.5 bits (101), Expect = 5e-05
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKPGKT 75
I G+ N GKS+L+N L+ +E A+ S PG T
Sbjct: 237 VIAGKPNAGKSTLLNTLLG-QERAIVSHMPGTT 268
Score = 37.5 bits (88), Expect = 0.002
Identities = 18/91 (19%), Positives = 25/91 (27%), Gaps = 13/91 (14%)
Query: 125 VLLLIDASVPPQKIDLDCANWL--GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI 182
+L L+D +L L V K D+ A +
Sbjct: 316 ILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTG---- 371
Query: 183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
I S++ G G D L HM L
Sbjct: 372 -------TEVIGISALNGDGIDTLKQHMGDL 395
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 42.1 bits (100), Expect = 6e-05
Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKPGKT 75
AI+GR NVGKSSL+NA + + A+ + PG T
Sbjct: 228 AIVGRPNVGKSSLLNAWSQ-SDRAIVTDLPGTT 259
Score = 37.5 bits (88), Expect = 0.002
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 14/89 (15%)
Query: 125 VLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE 184
VLL IDA+ D + + + PL V K D ++ E
Sbjct: 307 VLLTIDAATGWTTGDQEIYEQV--KHRPLILVMNKIDLVEKQLITS------------LE 352
Query: 185 NYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
+ + T++ G D L + ++
Sbjct: 353 YPENITQIVHTAAAQKQGIDSLETAILEI 381
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 40.0 bits (93), Expect = 2e-04
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 15 GHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGK 74
HS +E G + P++ + ++G++ GKS+ N+++ +K +
Sbjct: 6 HHSSGRE-NLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSI 64
Query: 75 TQ---LINHFLVNKSWYIVDLPGYG 96
T+ + +VD PG
Sbjct: 65 TKKCEKRSSSWKETELVVVDTPGIF 89
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 40.0 bits (92), Expect = 4e-04
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 36 KDDRPEFAILGRSNVGKSSLINALVRKK 63
+ +LG GKS+ +NAL+ +
Sbjct: 66 QQGVFRLLVLGDMKRGKSTFLNALIGEN 93
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 38.8 bits (91), Expect = 6e-04
Identities = 43/194 (22%), Positives = 67/194 (34%), Gaps = 60/194 (30%)
Query: 42 FAILGRSNVGKSSLINALVRKKELALTSKK------PGKT--QLINHFLVNKSWYIVDLP 93
A++G N GK+SL N +T PG T + NK I DLP
Sbjct: 6 IALIGNPNSGKTSLFN--------LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLP 57
Query: 94 G-YGF-AKAPD--VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN 149
G Y +P+ V R +L + +L ++DA+ N L RN
Sbjct: 58 GIYSMSPYSPEAKVARD---------YLLSQRADSILNVVDAT-----------N-LERN 96
Query: 150 ----------NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT 199
IP+T D V G+ N+ + P + TS++
Sbjct: 97 LYLTTQLIETGIPVTIALNMID---VLDGQGKKINVDKLSYHLG------VPVVATSALK 147
Query: 200 GLGRDELLLHMSQL 213
G D+++ +
Sbjct: 148 QTGVDQVVKKAAHT 161
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 38.3 bits (88), Expect = 0.001
Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 35/196 (17%)
Query: 44 ILGRSNVGKSSLINALVRKK------------ELALTSKKPGKTQLINHFLVNKSWYIVD 91
++G S +GKS+LIN+L ++ T + T I V +VD
Sbjct: 42 VVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 101
Query: 92 LPGYGFAKAPDVTRMDWSSFTKGYF---LNRESLVG-----------VLLLIDASVPPQK 137
PGYG A S+ F L+ ES + I K
Sbjct: 102 TPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLK 161
Query: 138 -IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS 196
+D+ + + + V K D + + + ++ I + H I
Sbjct: 162 PLDVAFMKAIHN-KVNIVPVIAKADTLT-------LKERERLKKRILDEIEEHNIKIYHL 213
Query: 197 SVTGLGRDELLLHMSQ 212
DE ++
Sbjct: 214 PDAESDEDEDFKEQTR 229
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 37.6 bits (88), Expect = 0.001
Identities = 44/200 (22%), Positives = 66/200 (33%), Gaps = 71/200 (35%)
Query: 42 FAILGRSNVGKSSLINAL--------------VRKKELALTSKKPGKTQLINHFLVNKSW 87
A+ G NVGK+SL NAL V KKE T K +
Sbjct: 8 VALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-------------GYTI 54
Query: 88 YIVDLPG-YGF-AKAPD--VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCA 143
++DLPG Y + D + R +L + V+L+ D+
Sbjct: 55 NLIDLPGTYSLGYSSIDEKIAR---------DYLLKGDADLVILVADSV----------- 94
Query: 144 NWLGRN----------NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI 193
N ++ + T D AK + Q+ + P +
Sbjct: 95 N-PEQSLYLLLEILEMEKKVILAMTAID---EAKKTGMKIDRYELQKHLG------IPVV 144
Query: 194 MTSSVTGLGRDELLLHMSQL 213
TSSVTG G +EL + +
Sbjct: 145 FTSSVTGEGLEELKEKIVEY 164
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 36.9 bits (86), Expect = 0.002
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 40/109 (36%)
Query: 42 FAILGRSNVGKSSLINAL--------------VRKKELALTSKKPGKTQLINHFLVNKSW 87
A++G NVGK+++ NAL V KKE + + K +
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR-------------EKEF 52
Query: 88 YIVDLPG-YGF-AKAPD--VTRMDWSSFTKGYFLNRESLVGVLLLIDAS 132
+VDLPG Y A + D + R F+ + ++ ++D++
Sbjct: 53 LVVDLPGIYSLTAHSIDELIARN---------FILDGNADVIVDIVDST 92
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 36.1 bits (83), Expect = 0.004
Identities = 30/170 (17%), Positives = 49/170 (28%), Gaps = 25/170 (14%)
Query: 25 VKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH---- 80
SSGR + +P ++G GKSS+ + K T T I
Sbjct: 6 HHSSGRENLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETL-FLESTNKIYKDDIS 64
Query: 81 FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL 140
++ I D PG + F +L+ V IDA +
Sbjct: 65 NSSFVNFQIWDFPG------QMDFFDPTFDYE-MIFRGTGALIYV---IDAQDDYMEALT 114
Query: 141 DCANWLGRN-----NIPLTFVF-TKCDKMKVAKGRRPDENIKSFQQLIRE 184
+ + ++ VF K D + E + Q +
Sbjct: 115 RLHITVSKAYKVNPDMNF-EVFIHKVDGLSDDH---KIETQRDIHQRAND 160
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron
uptake, cell inner membrane, cell GTP-binding, ION
transport, membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 35.7 bits (83), Expect = 0.006
Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 27/67 (40%)
Query: 42 FAILGRSNVGKSSLINAL--------------VRKKELALTSKKPGKTQLINHFLVNKSW 87
++G N GK++L NAL V KK
Sbjct: 4 ALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG-------------EHLI 50
Query: 88 YIVDLPG 94
I DLPG
Sbjct: 51 EITDLPG 57
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 36.0 bits (84), Expect = 0.006
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 14/62 (22%)
Query: 43 AILGRSNVGKSSLINALVRKKELALT---SKKPGK-------TQLINHFLVNKSWYIVDL 92
+ G S VGKSSL+NA+ +L S+K + QL+ + Y+VD
Sbjct: 173 TMAGLSGVGKSSLLNAINPGLKLR-VSEVSEKLQRGRHTTTTAQLLK---FDFGGYVVDT 228
Query: 93 PG 94
PG
Sbjct: 229 PG 230
Score = 27.5 bits (62), Expect = 3.4
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 8/63 (12%)
Query: 149 NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL 208
N + V K D DE+ + + E Y P + TS+ TG+G +EL
Sbjct: 114 NELETVMVINKMD--------LYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKE 165
Query: 209 HMS 211
++
Sbjct: 166 YLK 168
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 35.4 bits (81), Expect = 0.008
Identities = 28/149 (18%), Positives = 47/149 (31%), Gaps = 13/149 (8%)
Query: 26 KSSGRAKDCPKDDRPEFAI--LGRSNVGKSSLINALVRKKELALTSKKPGKT---QLINH 80
G R E I +G++ GKS+ N+++RK+ T
Sbjct: 7 SHWGPHAKGQCASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQG 66
Query: 81 FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL 140
N+ I+D P K + +L VLLL+ D
Sbjct: 67 SWGNREIVIIDTPDMFSWKDHC---EALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQ 123
Query: 141 DCANWL----GRNNIPLT-FVFTKCDKMK 164
A + G + + T +FT + +
Sbjct: 124 QAAQRVKEIFGEDAMGHTIVLFTHKEDLN 152
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins,
cell membrane, ION transport, transmembrane; HET: GNP;
1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A*
2wjh_A*
Length = 165
Score = 34.8 bits (81), Expect = 0.009
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 27/67 (40%)
Query: 42 FAILGRSNVGKSSLINAL--------------VRKKELALTSKKPGKTQLINHFLVNKSW 87
A++G NVGKS++ NAL V KKE + +
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN-------------GEKF 52
Query: 88 YIVDLPG 94
+VDLPG
Sbjct: 53 KVVDLPG 59
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 35.4 bits (81), Expect = 0.009
Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 9/147 (6%)
Query: 26 KSSGRAKDCPKDDRP-EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV- 83
SSGR + + ++GR+ GKS+ N+++ ++ T+
Sbjct: 7 HSSGRENLYFQGESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR 66
Query: 84 --NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD 141
+VD P ++ T Y L+ +LL+ +
Sbjct: 67 WDKCHVEVVDTPDIFSSQVSK-TDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQA 125
Query: 142 CA---NWLGRNNIPLT-FVFTKCDKMK 164
+ G + + VFT+ + +
Sbjct: 126 VRQVRDMFGEDVLKWMVIVFTRKEDLA 152
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 34.7 bits (80), Expect = 0.010
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 27/136 (19%)
Query: 39 RPEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLVNKSWYIVDLPGYGF 97
+P I G N GK+SL+ L + S++P + +VD PG+
Sbjct: 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYD----GSGVTLVDFPGH-- 101
Query: 98 AKAPDVTRMDWSSFTKGYFLNRESLV-GVLLLIDASVPPQKIDLDCANWL---------- 146
R S Y R V G++ ++D++V P+K+ A +L
Sbjct: 102 ----VKLRYKLSD----YLKTRAKFVKGLIFMVDSTVDPKKLT-TTAEFLVDILSITESS 152
Query: 147 GRNNIPLTFVFTKCDK 162
N I + K +
Sbjct: 153 CENGIDILIACNKSEL 168
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION
transport, membrane; 1.80A {Escherichia coli} PDB:
3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 35.0 bits (81), Expect = 0.011
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 27/67 (40%)
Query: 42 FAILGRSNVGKSSLINAL--------------VRKKELALTSKKPGKTQLINHFLVNKSW 87
++G N GK++L N L V +KE ++ +
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT-------------DHQV 52
Query: 88 YIVDLPG 94
+VDLPG
Sbjct: 53 TLVDLPG 59
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 34.5 bits (80), Expect = 0.012
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 27/67 (40%)
Query: 42 FAILGRSNVGKSSLINAL--------------VRKKELALTSKKPGKTQLINHFLVNKSW 87
A++G NVGKS++ NAL V KKE + +
Sbjct: 10 IALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN-------------GEKF 56
Query: 88 YIVDLPG 94
+VDLPG
Sbjct: 57 KVVDLPG 63
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 34.7 bits (80), Expect = 0.012
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 27/139 (19%)
Query: 36 KDDRPEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLVNKSWYIVDLPG 94
K +P I G N GK+SL+ L + S++P + +VD PG
Sbjct: 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYD----GSGVTLVDFPG 64
Query: 95 YGFAKAPDVTRMDWSSFTKGYFLNRESLV-GVLLLIDASVPPQKIDLDCANWL------- 146
+ R S Y R V G++ ++D++V P+K+ A +L
Sbjct: 65 HVKL------RYKLSD----YLKTRAKFVKGLIFMVDSTVDPKKLT-TTAEFLVDILSIT 113
Query: 147 ---GRNNIPLTFVFTKCDK 162
N I + K +
Sbjct: 114 ESSCENGIDILIACNKSEL 132
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 34.9 bits (81), Expect = 0.013
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 146 LGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDE 205
+G + P+ K DK+ ++ D ++L +E Y I S++ +
Sbjct: 288 IGVSGKPILVTLNKIDKINGDLYKKLDLV----EKLSKELYSPIFDVIPISALKRTNLEL 343
Query: 206 LLLHMSQL 213
L + QL
Sbjct: 344 LRDKIYQL 351
Score = 34.9 bits (81), Expect = 0.014
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 18 QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELA 66
+++ ++ K + +++ P I+G +N GK+SL N+L +
Sbjct: 159 ELESIKIFKEKSIESN-KRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKV 206
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.015
Identities = 37/247 (14%), Positives = 66/247 (26%), Gaps = 46/247 (18%)
Query: 3 LPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAIL--GRSNVGKSSLINALV 60
L N V Y + ++ + + + RP +L G GK+ + +
Sbjct: 119 LYNDNQVFAKY----NVSRLQPYL---KLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 61 RKKELA---------LTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRM--DWS 109
++ L K + + L K Y +D + ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 110 SFTKGYFLNRESLVGVLLLIDASVPPQKI----DLDCANWLGRNNIPLTFVF-----TKC 160
L + LL++ +V K +L C L +T T
Sbjct: 231 QAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 161 DKMKVAKGRRPDENIK--------SFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
+ PDE Q L RE +P S+ E +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP---RRLSIIA----ESIRDGLA 342
Query: 213 LRNYWDQ 219
+ W
Sbjct: 343 TWDNWKH 349
Score = 31.0 bits (69), Expect = 0.33
Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 47/156 (30%)
Query: 52 KSSLINALVRKKE---------LALTSKKPGKTQL----INHFLVNKSWYIVDLPGYGFA 98
K SL+ + KE L L K + L ++H+ + K++ DL
Sbjct: 413 KYSLVEK--QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI----- 465
Query: 99 KAPDVTRMDWSSFTKGYFLN------RESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP 152
P + S G+ L R +L ++ L D QKI D W +I
Sbjct: 466 --PPYLDQYFYSHI-GHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSIL 521
Query: 153 LTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH 188
T + +K ++ I +N P
Sbjct: 522 NTL-----------------QQLKFYKPYICDNDPK 540
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 34.6 bits (80), Expect = 0.017
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 43 AILGRSNVGKSSLINALVRKKELALT---SKKPGK-------TQLINHFLVNKSWYIVDL 92
G+S VGKSSL+NAL+ + LT S G +L + ++D
Sbjct: 219 IFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYH---FPHGGDVIDS 275
Query: 93 PG 94
PG
Sbjct: 276 PG 277
Score = 28.0 bits (63), Expect = 2.6
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 149 NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL 208
+ V K D + +E + ++ + Y +M SS T G L
Sbjct: 159 LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNI---GYR----VLMVSSHTQDGLKPLEE 211
Query: 209 HMS 211
++
Sbjct: 212 ALT 214
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 34.5 bits (79), Expect = 0.022
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 155 FVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQL 213
V K D + R + + +LI PP + S+V G G EL + +
Sbjct: 222 VVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERH 281
Query: 214 RNY 216
R
Sbjct: 282 RQV 284
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.3 bits (78), Expect = 0.027
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 41 EFAIL--GRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKS-------WYIVD 91
F IL G + +GKS+L++ L K + + + IV
Sbjct: 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101
Query: 92 LPGYG 96
G+G
Sbjct: 102 TVGFG 106
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 33.7 bits (77), Expect = 0.030
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
Query: 155 FVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQL 213
TK D + RR S +L+R+ P I S+ +G G E+ M
Sbjct: 217 VAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDF 276
Query: 214 RNY 216
++
Sbjct: 277 QDL 279
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 33.7 bits (78), Expect = 0.036
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 43 AILGRSNVGKSSLINALVRKKELA 66
G+S VGKSSL+NA+ + L
Sbjct: 177 VFAGQSGVGKSSLLNAISPELGLR 200
Score = 27.1 bits (61), Expect = 4.0
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 8/64 (12%)
Query: 149 NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH-HPPWIMTSSVTGLGRDELL 207
N+I TK D + D++ + Q E+Y + +TSS +++
Sbjct: 116 NDIQPIICITKMDLI-------EDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADII 168
Query: 208 LHMS 211
H
Sbjct: 169 PHFQ 172
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.047
Identities = 47/284 (16%), Positives = 89/284 (31%), Gaps = 88/284 (30%)
Query: 2 ILPGSNI--VVGPYAGHS---QIKEVEFVKSSGRAKDC---PKDDRPEFAILGRSNVGKS 53
L G++I + + +K E +K+ A+ P D + A+ G +
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 54 SLI-------NALVRKKELALTSK--KPGKTQLINHF---LVNKSWYIVDLPGYGFAKAP 101
L+ N +EL + LI L +D F +
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV-FTQGL 213
Query: 102 DVTRMDWSSFTKGYFLNRESL---VGVLLLIDASVPPQKIDL-DCANW------LGRNNI 151
++ ++W L S LL I S P I + A++ LG
Sbjct: 214 NI--LEW--------LENPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKLLGFT-- 259
Query: 152 PLTFVFTKCDKMKVAKGRRPD----------ENIKSFQQLIR--------------ENYP 187
P +K A G ++ +SF +R E YP
Sbjct: 260 PGELR----SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYP 315
Query: 188 HH--PPWIMTSS-------------VTGLGRDELLLHMSQLRNY 216
+ PP I+ S ++ L ++++ ++++ ++
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSH 359
Score = 29.2 bits (65), Expect = 1.1
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 23/56 (41%)
Query: 13 YAGHS--------------QIKE-VEFVKSSGRA--KDCPKDDRPEFAILGRSNVG 51
+AGHS I+ VE V G P+D+ LGRSN G
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE------LGRSNYG 1808
Score = 27.7 bits (61), Expect = 3.6
Identities = 14/41 (34%), Positives = 15/41 (36%), Gaps = 20/41 (48%)
Query: 148 RNNIP--LTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186
NN P LT F KG+R IRENY
Sbjct: 1666 INN-PVNLTIHFGG------EKGKR-----------IRENY 1688
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 32.9 bits (76), Expect = 0.058
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 15/62 (24%)
Query: 43 AILGRSNVGKSSLINALVRKKELALT---SKKPGK-------TQLINHFLVNKSWYIVDL 92
+ G S VGKSS+++ L +EL T S+K + +LI K ++ D
Sbjct: 169 ILAGPSGVGKSSILSRLT-GEELR-TQEVSEKTERGRHTTTGVRLIP---FGKGSFVGDT 223
Query: 93 PG 94
PG
Sbjct: 224 PG 225
Score = 27.9 bits (63), Expect = 2.7
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 149 NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL 208
+ VF K D + + + + I ++ Y + S+ TG G DEL+
Sbjct: 109 FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA---GYD----VLKVSAKTGEGIDELVD 161
Query: 209 HMS 211
++
Sbjct: 162 YLE 164
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 32.9 bits (75), Expect = 0.067
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 155 FVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQL 213
V K D +S ++R Y P + S++ G DE+ +
Sbjct: 199 IVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258
Query: 214 RNY 216
+
Sbjct: 259 KTA 261
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 31.7 bits (73), Expect = 0.18
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 44 ILGRSNVGKSSLINALVRKKELA 66
I+G NVGKS+L NAL R LA
Sbjct: 6 IVGLPNVGKSTLFNALTRANALA 28
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 31.6 bits (72), Expect = 0.19
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 44 ILGRSNVGKSSLINALVR 61
+LGR+ GKS+L++A +R
Sbjct: 52 LLGRTGSGKSTLLSAFLR 69
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 31.6 bits (72), Expect = 0.21
Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 22/94 (23%)
Query: 124 GVLLLIDAS--VPPQK---IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSF 178
L+++DA Q + + + IP+ V TK D E IK
Sbjct: 99 LALIVVDAKEGPKTQTGEHMLI--LDHFN---IPIIVVITKSDNA-------GTEEIKRT 146
Query: 179 QQLIRE----NYP-HHPPWIMTSSVTGLGRDELL 207
+ +++ + + I S+ TG G DEL
Sbjct: 147 EMIMKSILQSTHNLKNSSIIPISAKTGFGVDELK 180
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 30.8 bits (69), Expect = 0.28
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 18/48 (37%)
Query: 35 PKDDRPEF------------------AILGRSNVGKSSLINALVRKKE 64
PKD+R +F +LG GKSS+I + +
Sbjct: 8 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELN 55
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 30.9 bits (69), Expect = 0.35
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 37 DDRPEFAILGRSNVGKSSLINALV 60
D +P + G+ + GK+S I L+
Sbjct: 63 DGKPMVLVAGQYSTGKTSFIQYLL 86
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 30.5 bits (69), Expect = 0.36
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 155 FVFTKCDKM-KVAKGRRPDENIKSFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQ 212
K D + ++ ++ PP + S + G G D L +
Sbjct: 198 IAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIED 257
Query: 213 LRNY 216
R+
Sbjct: 258 HRSK 261
Score = 26.3 bits (58), Expect = 8.6
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 50 VGKSSLINALVRK 62
VGKS+ I+AL
Sbjct: 66 VGKSTTIDALGSL 78
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 30.5 bits (70), Expect = 0.37
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 44 ILGRSNVGKSSLINALVRKKELA 66
I+G NVGKS+L NAL + A
Sbjct: 7 IVGLPNVGKSTLFNALTKAGIEA 29
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 29.8 bits (68), Expect = 0.40
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 27 SSGRAKDCPKDDRPEF--AILGRSNVGKSSLINALVRKK 63
SSGR + PE I+G + GKS+L++ +
Sbjct: 8 SSGRENLYFQ--GPELKVGIVGNLSSGKSALVHRYLTGT 44
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 29.6 bits (66), Expect = 0.46
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 40 PEFAILGRSNVGKSSLINALVRK 62
+I+G S+ GK++LI ++
Sbjct: 3 LILSIVGTSDSGKTTLITRMMPI 25
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 30.1 bits (67), Expect = 0.52
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 42 FAILGRSNVGKSSLINALVRKKE 64
+LG VGKSSL+ A + ++
Sbjct: 34 TLLLGIRRVGKSSLLRAFLNERP 56
Score = 27.8 bits (61), Expect = 2.7
Identities = 29/184 (15%), Positives = 50/184 (27%), Gaps = 21/184 (11%)
Query: 35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTS-KKPGKTQLINHFLVNKSWYIVDLP 93
PK R + R L +L L ++ GK+ L+ FL + ++D
Sbjct: 7 PKTRREDIF--DREEE-SRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCR 63
Query: 94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANW-------- 145
+ ++ I ++ ++ +
Sbjct: 64 ELYAERGHITREELIKELQS--TISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELN 121
Query: 146 -LGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW--IMTSSVTGLG 202
LG F D+ + + K L Y P I+T S GL
Sbjct: 122 DLGEELGEFIVAF---DEAQYLRFYGSRGG-KELLALFAYAYDSLPNLKIILTGSEVGLL 177
Query: 203 RDEL 206
D L
Sbjct: 178 HDFL 181
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 30.0 bits (67), Expect = 0.56
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH----FLVNKSWYIVDLP 93
+ ++GRS GKSS+ + ++ A +++ G T + H FL N + + D
Sbjct: 2 LGSKLLLMGRSGSGKSSMRS-IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCG 60
Query: 94 G 94
G
Sbjct: 61 G 61
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 29.6 bits (67), Expect = 0.58
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 44 ILGRSNVGKSSLINALVRKK 63
I+G + GK++L+ L++ K
Sbjct: 7 IVGNTGSGKTTLLQQLMKTK 26
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 29.5 bits (67), Expect = 0.71
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 156 VFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
V K D + EN+++F++ + ++YP P S+VT G ELL ++
Sbjct: 280 VANKMDMPE------AAENLEAFKEKLTDDYPVFP----ISAVTREGLRELLFEVANQ 327
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 29.2 bits (65), Expect = 0.75
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 40 PEFAILGRSNVGKSSLINALVRK 62
+ ++G + GK++L+ V
Sbjct: 5 NVWQVVGYKHSGKTTLMEKWVAA 27
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.8 bits (66), Expect = 0.78
Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 13/69 (18%)
Query: 41 EFAIL--GRSNVGKSSLINALVRKKELALTSKKPG-----------KTQLINHFLVNKSW 87
EF ++ G S +GKS+LIN+L + P LI V
Sbjct: 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 90
Query: 88 YIVDLPGYG 96
IVD PG+G
Sbjct: 91 TIVDTPGFG 99
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 29.4 bits (67), Expect = 0.78
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 12/59 (20%)
Query: 156 VFTKCDKMKVAKGRRPDENIKSF-QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
K D + +E +K+ L RE P S++TG G L + L
Sbjct: 275 ALNKVDLL-------EEEAVKALADALAREGLAVLP----VSALTGAGLPALKEALHAL 322
>2dst_A Hypothetical protein TTHA1544; conserved hypothetical protein,
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus} SCOP: c.69.1.39
Length = 131
Score = 28.5 bits (63), Expect = 0.81
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 88 YIVDLPGYGFAKAPDVTRMDWSSFTKGYF----LNRESLVGV 125
Y++DLPGYG + P + + + F G+ L ++
Sbjct: 46 YLLDLPGYGRTEGPRMAPEELAHFVAGFAVMMNLGAPWVLLR 87
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein
transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP:
c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A*
1vg9_B*
Length = 207
Score = 29.2 bits (66), Expect = 0.82
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 44 ILGRSNVGKSSLINALVRKK 63
ILG S VGK+SL+N V KK
Sbjct: 13 ILGDSGVGKTSLMNQYVNKK 32
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.1 bits (64), Expect = 0.85
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 40 PEFAILGRSNVGKSSLINALVRK 62
P A S GK++L+ L+
Sbjct: 7 PLLAFAAWSGTGKTTLLKKLIPA 29
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 29.1 bits (66), Expect = 0.87
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 27 SSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRK 62
SSGR + + ++G S VG+S + NAL+ +
Sbjct: 8 SSGRENLYFQGRKT-LVLIGASGVGRSHIKNALLSQ 42
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein
transport; HET: GDP; 1.25A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 29.0 bits (66), Expect = 0.87
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 44 ILGRSNVGKSSLINALVRKK 63
+LG VGKSSL+N V K
Sbjct: 12 LLGDGGVGKSSLMNRYVTNK 31
>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold,
beta-barrel, symmetric arginine dimethylase, SAM
binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB:
3ua4_A
Length = 745
Score = 29.6 bits (65), Expect = 0.91
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Query: 108 WSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN-WLGRNNIPLTFVFTKCDKMKVA 166
W+ F K V L I + +P + +L + W PL +
Sbjct: 223 WADFRKNCGNFSGVYFQVALTISSELPDELTELKLVDRWKAE---PLAAFVIESGLFISG 279
Query: 167 KGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTG 200
+ + L++ + I+ + T
Sbjct: 280 RNGEASIP-SAHINLLKHLWTTDALRIVLRATTD 312
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 29.4 bits (67), Expect = 0.96
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 44 ILGRSNVGKSSLINALVR 61
I+G NVGKS+ A+ +
Sbjct: 25 IVGMPNVGKSTFFRAITK 42
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 29.0 bits (66), Expect = 1.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 44 ILGRSNVGKSSLINAL 59
I+G NVGKS+ N L
Sbjct: 27 IVGLPNVGKSTFFNVL 42
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 28.3 bits (64), Expect = 1.2
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 44 ILGRSNVGKSSLINALVRKK 63
ILG S VGK+SL++ V K
Sbjct: 13 ILGDSGVGKTSLMHRYVNDK 32
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 28.6 bits (63), Expect = 1.3
Identities = 26/164 (15%), Positives = 48/164 (29%), Gaps = 19/164 (11%)
Query: 46 GRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTR 105
G S+ GKS ++ L +P ++ + + G G D
Sbjct: 10 GGSSAGKSGIVRCLQSVLP------EPWLAFGVDSLIEAMPLKMQSAEG-GIEFDADGGV 62
Query: 106 MDWSSFTKGYFLNRESLV-----GVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKC 160
F E +V G ++ID + ++ + +V +C
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVG-DLDVLWVGVRC 121
Query: 161 DKMKVAKGR---RPDENIKSFQQLIRENYPHHPP--WIMTSSVT 199
D VA+GR R D + + + T+
Sbjct: 122 DG-AVAEGRETARGDRVAGMAAKQAYVVHEGVEYDVEVDTTHKE 164
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A
{Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 28.3 bits (64), Expect = 1.3
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 26 KSSGRAKDCPKDDRPEF--AILGRSNVGKSSL 55
SSGR E+ ++G VGKS+L
Sbjct: 7 HSSGRENL-YFQGMTEYKLVVVGAGGVGKSAL 37
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 128
Score = 28.0 bits (62), Expect = 1.3
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
E YP P S L +++ + L ++
Sbjct: 65 EKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEE 100
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 28.4 bits (64), Expect = 1.3
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 39 RPEF--AILGRSNVGKSSLINALVRKK 63
PE +LG + GKSSLI+ +
Sbjct: 5 IPELRLGVLGDARSGKSSLIHRFLTGS 31
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling
protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A*
3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 28.3 bits (64), Expect = 1.4
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 27 SSGRAKDCPKDDRPEF--AILGRSNVGKSSLI 56
S P ++ P + ++G VGKS+L
Sbjct: 4 GSMATSAVPSENLPTYKLVVVGDGGVGKSALT 35
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 28.8 bits (65), Expect = 1.4
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 43 AILGRSNVGKSSLINAL 59
++G+ NVGKS+ +A
Sbjct: 4 GVVGKPNVGKSTFFSAA 20
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 28.6 bits (64), Expect = 1.5
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 36 KDDRPEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLVNKSWYIVDLPG 94
K + +G + GK+ L L+ + TS + S ++DLPG
Sbjct: 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPG 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics,
structural genomics consortium, SGC; HET: GDP; 1.90A
{Homo sapiens} SCOP: c.37.1.8
Length = 196
Score = 28.3 bits (64), Expect = 1.6
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 13 YAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRK 62
+ H V+ + + K + AI GR+ VGKS+L+ + K
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTK 51
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 28.2 bits (63), Expect = 1.6
Identities = 25/193 (12%), Positives = 60/193 (31%), Gaps = 45/193 (23%)
Query: 44 ILGRSNVGKSSLINAL------VRKKELALTSKKPGKTQLINHFLV--------NKSWYI 89
G GK++ + + RK E+ + + +T + + +++
Sbjct: 19 YYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHL 78
Query: 90 VDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN 149
+PG +G + G++ + D++ + + + + N
Sbjct: 79 YTVPG------QVFYNASRKLILRG-------VDGIVFVADSAPNRLRANAESMRNMREN 125
Query: 150 ---------NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTG 200
++P+ K D P E +++ P + + G
Sbjct: 126 LAEYGLTLDDVPIVIQVNKRD----LPDALPVEMVRAVVDP-----EGKFPVLEAVATEG 176
Query: 201 LGRDELLLHMSQL 213
G E L +S+L
Sbjct: 177 KGVFETLKEVSRL 189
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.1
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 5/27 (18%)
Query: 18 QIKEVEFVKSSGRAKDCPKDDRPEFAI 44
+K+++ K D P AI
Sbjct: 21 ALKKLQ-----ASLKLYADDSAPALAI 42
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 28.3 bits (64), Expect = 2.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 43 AILGRSNVGKSSLINALVR 61
A++GRS GKS++ N R
Sbjct: 373 ALVGRSGSGKSTIANLFTR 391
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 28.4 bits (64), Expect = 2.3
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 10/86 (11%)
Query: 137 KIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGR-RPDENIKSF--QQLIRENYPHHPPW- 192
KID W P F+K D K + E + + E + +
Sbjct: 131 KIDR-IHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFA 189
Query: 193 -----IMTSSVTGLGRDELLLHMSQL 213
I S++TG G ELL + L
Sbjct: 190 SQVSIIPISAITGEGIPELLTMLMGL 215
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 27.5 bits (62), Expect = 2.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 43 AILGRSNVGKSSLINALVRK 62
AILGR GKS+L + K
Sbjct: 25 AILGRRGAGKSALTVKFLTK 44
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 27.3 bits (60), Expect = 2.8
Identities = 14/78 (17%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 43 AILGRSNVGKSSLINALVRK------KELALTSKKPGKT-----QLINHFLVNKSWYIVD 91
I G +N+GKS L AL+ + ++ ++ + + N +++ I+D
Sbjct: 20 LITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQLIGSCPSVANGYILITGIGIID 79
Query: 92 LPG-YGFAKAPDVTRMDW 108
+P +G + +
Sbjct: 80 VPKLFGLDAVVNQHEVHL 97
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 27.9 bits (63), Expect = 3.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 43 AILGRSNVGKSSLINALVR 61
A++GRS GKS++ + + R
Sbjct: 373 ALVGRSGSGKSTIASLITR 391
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type
I ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 27.7 bits (62), Expect = 3.4
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 42 FAILGRSNVGKSSL---INALVR 61
+ ++G S GKS+L +N L R
Sbjct: 57 YGVIGASGAGKSTLIRCVNLLER 79
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 27.3 bits (61), Expect = 3.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 25 VKSSGRAKDCPKDDRPEFAILGRSNVGKSSLIN 57
VK + D R + A++G + VGKS+LI+
Sbjct: 6 VKKEVKPIDITATLRCKVAVVGEATVGKSALIS 38
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 27.1 bits (61), Expect = 3.7
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 44 ILGRSNVGKSSLIN 57
++G VGKSS+I
Sbjct: 10 VVGNGAVGKSSMIQ 23
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11,
replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus}
PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 27.3 bits (60), Expect = 3.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH 80
I+G++ GKSSL++A++ L K K +
Sbjct: 26 NLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKV 64
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 26.8 bits (60), Expect = 4.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 27 SSGRAKDCPKDDRPEFAILGRSNVGKSSLI 56
SSG + +LG + VGKSS++
Sbjct: 11 SSGLVPRGSAIRELKVCLLGDTGVGKSSIV 40
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 170
Score = 26.7 bits (59), Expect = 4.6
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 44 ILGRSNVGKSSLI 56
+LG + VGKSS++
Sbjct: 8 LLGEAAVGKSSIV 20
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid
starvation signal response, EIF2alpha kinase,
transferase; NMR {Saccharomyces cerevisiae}
Length = 138
Score = 26.6 bits (58), Expect = 4.7
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
YP+ P I +V + +L + S+ + +
Sbjct: 72 PMYPYTAPEIEFKNVQNVMDSQLQMLKSEFKKIHNT 107
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase
like domain, protein binding; 1.31A {Homo sapiens}
SCOP: c.37.1.1
Length = 180
Score = 26.7 bits (60), Expect = 5.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 42 FAILGRSNVGKSSLINALVRK 62
+LG VG+ + N L+ K
Sbjct: 8 LVLLGAHGVGRRHIKNTLITK 28
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein;
HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 26.4 bits (59), Expect = 6.1
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 44 ILGRSNVGKSSLI 56
+LG GK+SL
Sbjct: 11 VLGDGASGKTSLT 23
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 27.1 bits (60), Expect = 6.4
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 37 DDRPEF-AILGRSNVGKSSLINALVRKKEL 65
+ P + I G + GKS L VR L
Sbjct: 144 NGEPGWVTIYGMAGCGKSVLAAEAVRDHSL 173
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 26.3 bits (59), Expect = 6.6
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 44 ILGRSNVGKSSLI 56
+LG + VGKSS++
Sbjct: 11 LLGDTGVGKSSIM 23
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 26.3 bits (59), Expect = 6.6
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 44 ILGRSNVGKSSLI 56
+LG VGK+SL+
Sbjct: 11 LLGEGCVGKTSLV 23
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 26.3 bits (59), Expect = 6.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 43 AILGRSNVGKSSLI 56
AILG +VGKSSL
Sbjct: 10 AILGYRSVGKSSLT 23
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 26.4 bits (59), Expect = 7.1
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 27 SSGRAKDCPKDDRPE---FAILGRSNVGKSSLINALVRK 62
SSGR + + ++G S VGKS+L
Sbjct: 8 SSGRENLYFQGQKDGIFKVMLVGESGVGKSTLAGTFGGL 46
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 26.1 bits (57), Expect = 7.1
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 12/63 (19%)
Query: 43 AILGRSNVGKSSLINALVRKK------ELALTSKKPGKT------QLINHFLVNKSWYIV 90
I G S VGKS LV++ + ++ +T +++H L + I+
Sbjct: 38 LITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGII 97
Query: 91 DLP 93
D+
Sbjct: 98 DVM 100
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 26.0 bits (58), Expect = 7.9
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 43 AILGRSNVGKSSLI 56
++G VGKS+L
Sbjct: 8 VVVGADGVGKSALT 21
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain,
RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp
protein; HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 26.1 bits (58), Expect = 8.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 44 ILGRSNVGKSSLI 56
LG +VGK+SLI
Sbjct: 21 FLGEQSVGKTSLI 33
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 26.1 bits (58), Expect = 8.2
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 27 SSGRAKDCPKDDRPEFA------ILGRSNVGKSSLI 56
SSG D ++ ++G ++VGK+ ++
Sbjct: 11 SSGLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVV 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 26.0 bits (58), Expect = 8.3
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 43 AILGRSNVGKSSL 55
++G VGKS+L
Sbjct: 13 VVVGGGGVGKSAL 25
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 25.9 bits (58), Expect = 8.4
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 43 AILGRSNVGKSSLI 56
A+ G VGKSSL+
Sbjct: 7 AVFGAGGVGKSSLV 20
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding
protein, fluor membrane, lipoprotein, palmitate,
prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB:
2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A*
1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R
1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 25.9 bits (58), Expect = 8.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 43 AILGRSNVGKSSL 55
++G VGKS+L
Sbjct: 7 VVVGAGGVGKSAL 19
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution,
protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A*
1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A*
1huq_A* 2hei_A* 1z07_A*
Length = 170
Score = 25.9 bits (58), Expect = 8.6
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 44 ILGRSNVGKSSLI 56
+LG S VGKSSL+
Sbjct: 11 LLGESAVGKSSLV 23
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 26.0 bits (58), Expect = 8.7
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 44 ILGRSNVGKSSLI 56
+LG GKSSL+
Sbjct: 17 LLGDVGAGKSSLV 29
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 26.0 bits (58), Expect = 8.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 44 ILGRSNVGKSSLI 56
LG +VGK+SLI
Sbjct: 19 FLGEQSVGKTSLI 31
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 26.0 bits (58), Expect = 9.0
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 43 AILGRSNVGKSSLI 56
+ G VGKSSL+
Sbjct: 12 VVFGAGGVGKSSLV 25
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD
and GEM like GTP protein 1, structural genomics; HET:
GDP; 2.50A {Homo sapiens}
Length = 175
Score = 26.0 bits (58), Expect = 9.2
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 43 AILGRSNVGKSSLINALVRK 62
+LG VGK+SL + K
Sbjct: 8 VLLGDPGVGKTSLASLFAGK 27
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 26.2 bits (57), Expect = 9.2
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 44 ILGRSNVGKSSLINALVRK 62
++G GKSS+ +
Sbjct: 4 LMGVRRCGKSSICKVVFHN 22
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 25.9 bits (58), Expect = 9.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 43 AILGRSNVGKSSLI 56
++G VGKS+L
Sbjct: 8 IMVGSGGVGKSALT 21
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 26.0 bits (58), Expect = 9.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 43 AILGRSNVGKSSL 55
ILG VGK+SL
Sbjct: 28 VILGYRCVGKTSL 40
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A*
3rap_R*
Length = 167
Score = 25.5 bits (57), Expect = 9.6
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 43 AILGRSNVGKSSLI 56
+LG VGKS+L
Sbjct: 7 VVLGSGGVGKSALT 20
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.425
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,425,402
Number of extensions: 191282
Number of successful extensions: 676
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 174
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.9 bits)