Query 027759
Match_columns 219
No_of_seqs 154 out of 1008
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 14:45:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0859 Synaptobrevin/VAMP-lik 100.0 1.6E-69 3.5E-74 413.2 19.9 214 4-219 1-215 (217)
2 KOG0862 Synaptobrevin/VAMP-lik 100.0 3.5E-34 7.5E-39 223.6 21.4 193 5-199 1-204 (216)
3 KOG0861 SNARE protein YKT6, sy 100.0 9.1E-33 2E-37 207.5 15.9 177 4-185 1-193 (198)
4 KOG0860 Synaptobrevin/VAMP-lik 100.0 2.7E-29 5.9E-34 177.9 12.5 87 128-214 28-114 (116)
5 PF00957 Synaptobrevin: Synapt 100.0 3E-29 6.5E-34 175.4 12.6 88 128-215 2-89 (89)
6 COG5143 SNC1 Synaptobrevin/VAM 99.9 4.5E-23 9.7E-28 159.1 15.2 181 5-190 2-190 (190)
7 PF13774 Longin: Regulated-SNA 99.8 5.6E-19 1.2E-23 121.8 11.0 81 31-112 1-82 (83)
8 COG5143 SNC1 Synaptobrevin/VAM 97.9 3.7E-05 8E-10 60.1 7.3 78 130-207 95-172 (190)
9 PF00957 Synaptobrevin: Synapt 96.9 0.04 8.8E-07 37.9 11.5 77 129-209 10-86 (89)
10 PF03908 Sec20: Sec20; InterP 96.9 0.064 1.4E-06 37.3 12.2 75 133-210 5-89 (92)
11 KOG0811 SNARE protein PEP12/VA 96.7 0.026 5.6E-07 47.0 10.5 46 129-174 180-225 (269)
12 KOG0810 SNARE protein Syntaxin 96.4 0.042 9.1E-07 46.5 10.1 71 129-201 206-279 (297)
13 COG5074 t-SNARE complex subuni 96.0 0.081 1.8E-06 42.7 9.3 77 130-206 186-265 (280)
14 PF04086 SRP-alpha_N: Signal r 94.8 0.06 1.3E-06 45.1 5.3 64 29-94 5-70 (279)
15 PF03908 Sec20: Sec20; InterP 94.6 0.97 2.1E-05 31.3 11.8 40 129-168 8-47 (92)
16 PF09753 Use1: Membrane fusion 93.2 1.7 3.8E-05 35.8 11.0 41 167-209 202-245 (251)
17 KOG0781 Signal recognition par 93.0 0.28 6.1E-06 44.0 6.2 86 7-94 4-95 (587)
18 KOG0860 Synaptobrevin/VAMP-lik 91.3 4.2 9.1E-05 29.4 11.1 24 156-179 63-86 (116)
19 PRK01026 tetrahydromethanopter 89.6 3.9 8.5E-05 27.2 7.4 29 157-187 22-50 (77)
20 PF04099 Sybindin: Sybindin-li 89.5 5.7 0.00012 29.8 9.5 59 33-92 46-114 (142)
21 COG5074 t-SNARE complex subuni 88.6 2.9 6.2E-05 34.1 7.5 65 146-214 212-276 (280)
22 TIGR01149 mtrG N5-methyltetrah 88.5 5.1 0.00011 26.1 7.3 29 157-187 19-47 (70)
23 PF04210 MtrG: Tetrahydrometha 88.1 5.5 0.00012 26.0 8.2 30 156-187 18-47 (70)
24 PF10779 XhlA: Haemolysin XhlA 86.8 6.7 0.00015 25.7 9.8 51 156-209 19-69 (71)
25 KOG1983 Tomosyn and related SN 86.8 0.56 1.2E-05 46.3 3.1 45 144-188 942-986 (993)
26 PF09426 Nyv1_N: Vacuolar R-SN 86.4 1.3 2.8E-05 32.8 4.0 38 50-87 70-110 (141)
27 PF01217 Clat_adaptor_s: Clath 85.3 13 0.00028 27.5 13.3 88 5-94 1-96 (141)
28 PTZ00478 Sec superfamily; Prov 84.9 4.5 9.7E-05 27.3 5.8 57 152-208 9-65 (81)
29 COG5325 t-SNARE complex subuni 84.2 17 0.00037 30.4 10.0 43 129-171 195-237 (283)
30 KOG3385 V-SNARE [Intracellular 83.7 8.1 0.00018 27.9 7.0 76 129-209 36-115 (118)
31 PF04799 Fzo_mitofusin: fzo-li 83.3 13 0.00029 28.8 8.6 51 129-179 109-159 (171)
32 PF06789 UPF0258: Uncharacteri 82.8 0.66 1.4E-05 35.1 1.2 35 177-214 121-155 (159)
33 PRK09400 secE preprotein trans 82.1 7.7 0.00017 24.8 5.8 49 161-209 5-53 (61)
34 PF03904 DUF334: Domain of unk 81.8 26 0.00057 28.4 12.2 24 194-217 151-174 (230)
35 PF11166 DUF2951: Protein of u 80.9 16 0.00035 25.4 9.9 27 129-156 28-54 (98)
36 KOG3202 SNARE protein TLG1/Syn 79.8 32 0.0007 28.2 10.5 25 131-155 139-163 (235)
37 cd07912 Tweety_N N-terminal do 79.6 41 0.00088 30.1 11.5 41 107-150 104-144 (418)
38 PRK10884 SH3 domain-containing 78.5 33 0.00071 27.5 12.4 18 155-172 130-147 (206)
39 PF04510 DUF577: Family of unk 77.9 19 0.00041 28.1 7.8 108 63-191 64-171 (174)
40 PF06008 Laminin_I: Laminin Do 76.9 41 0.00089 27.8 10.4 44 129-172 192-235 (264)
41 PF09753 Use1: Membrane fusion 76.4 35 0.00076 28.1 9.7 11 81-91 114-124 (251)
42 PF13800 Sigma_reg_N: Sigma fa 75.3 7.2 0.00016 27.0 4.6 12 181-192 6-17 (96)
43 KOG3894 SNARE protein Syntaxin 75.2 38 0.00082 28.9 9.5 50 110-165 216-268 (316)
44 KOG2678 Predicted membrane pro 73.2 26 0.00057 28.4 7.7 19 164-182 194-212 (244)
45 KOG1666 V-SNARE [Intracellular 72.3 50 0.0011 26.6 12.0 47 162-208 165-214 (220)
46 KOG0938 Adaptor complexes medi 71.5 68 0.0015 27.9 11.0 84 8-93 6-92 (446)
47 KOG0812 SNARE protein SED5/Syn 70.1 66 0.0014 27.2 10.4 44 129-172 227-273 (311)
48 PF11657 Activator-TraM: Trans 69.9 45 0.00098 25.2 14.0 69 70-150 21-90 (144)
49 PF06837 Fijivirus_P9-2: Fijiv 68.0 9.2 0.0002 30.0 4.0 37 134-170 21-59 (214)
50 KOG1690 emp24/gp25L/p24 family 67.6 26 0.00056 27.9 6.4 18 174-191 170-188 (215)
51 PF07204 Orthoreo_P10: Orthore 67.4 3.3 7.3E-05 28.7 1.3 24 191-214 40-63 (98)
52 TIGR00327 secE_euk_arch protei 67.0 23 0.0005 22.6 5.1 43 167-209 7-49 (61)
53 PF13800 Sigma_reg_N: Sigma fa 66.1 14 0.00031 25.5 4.5 20 182-201 4-23 (96)
54 PF05739 SNARE: SNARE domain; 65.8 30 0.00064 21.5 9.2 44 129-172 4-47 (63)
55 PF07798 DUF1640: Protein of u 65.4 62 0.0013 25.1 12.1 25 129-153 80-104 (177)
56 KOG3251 Golgi SNAP receptor co 64.5 74 0.0016 25.7 10.2 60 148-209 137-207 (213)
57 PF05478 Prominin: Prominin; 64.1 1.1E+02 0.0023 30.0 11.3 19 197-215 423-441 (806)
58 KOG2678 Predicted membrane pro 63.8 58 0.0013 26.5 7.8 28 171-198 194-222 (244)
59 KOG0810 SNARE protein Syntaxin 63.8 20 0.00044 30.5 5.6 39 172-210 245-285 (297)
60 PF12352 V-SNARE_C: Snare regi 63.4 35 0.00076 21.5 8.8 48 128-175 7-54 (66)
61 KOG1326 Membrane-associated pr 62.7 11 0.00024 37.0 4.2 30 182-211 1060-1089(1105)
62 smart00096 UTG Uteroglobin. 62.0 22 0.00047 23.3 4.3 40 116-155 23-62 (69)
63 KOG0809 SNARE protein TLG2/Syn 60.8 40 0.00087 28.5 6.7 35 129-163 218-252 (305)
64 PF13124 DUF3963: Protein of u 60.4 21 0.00046 20.0 3.5 18 186-203 17-34 (40)
65 PF01099 Uteroglobin: Uteroglo 60.3 21 0.00046 23.0 4.1 43 113-155 18-60 (67)
66 PF06072 Herpes_US9: Alphaherp 60.2 33 0.00072 21.7 4.7 9 171-179 9-17 (60)
67 PHA02557 22 prohead core prote 60.0 64 0.0014 26.9 7.7 94 78-172 89-190 (271)
68 KOG0859 Synaptobrevin/VAMP-lik 59.1 42 0.00092 26.8 6.2 52 136-187 125-176 (217)
69 PF00482 T2SF: Type II secreti 58.7 22 0.00048 24.6 4.5 39 167-205 78-117 (124)
70 KOG3498 Preprotein translocase 57.8 47 0.001 21.4 5.1 39 159-197 4-42 (67)
71 cd00633 Secretoglobin Secretog 56.7 30 0.00065 22.2 4.4 42 113-154 18-59 (67)
72 PF09680 Tiny_TM_bacill: Prote 55.2 11 0.00024 19.2 1.6 9 203-211 12-20 (24)
73 PF05659 RPW8: Arabidopsis bro 54.9 62 0.0013 24.5 6.5 30 129-158 51-80 (147)
74 KOG3369 Transport protein part 54.1 1E+02 0.0023 24.1 9.0 78 35-119 110-196 (199)
75 PF02439 Adeno_E3_CR2: Adenovi 53.6 21 0.00046 20.4 2.8 14 196-209 7-20 (38)
76 PF08006 DUF1700: Protein of u 52.5 1.1E+02 0.0023 23.7 8.3 11 80-90 5-15 (181)
77 PRK11546 zraP zinc resistance 51.3 68 0.0015 24.2 6.1 22 124-146 85-106 (143)
78 COG5415 Predicted integral mem 50.7 78 0.0017 25.5 6.5 19 156-174 14-32 (251)
79 PF03164 Mon1: Trafficking pro 50.4 1E+02 0.0023 27.4 8.2 87 8-94 14-104 (415)
80 KOG4433 Tweety transmembrane/c 49.5 1.9E+02 0.004 26.5 9.3 26 134-159 160-185 (526)
81 PRK10600 nitrate/nitrite senso 48.8 1.9E+02 0.0041 26.6 10.0 19 136-154 68-86 (569)
82 PF14575 EphA2_TM: Ephrin type 48.6 30 0.00066 22.9 3.5 18 197-214 6-23 (75)
83 PHA02650 hypothetical protein; 48.5 15 0.00033 24.6 1.9 18 187-204 45-62 (81)
84 PF06825 HSBP1: Heat shock fac 48.4 55 0.0012 20.3 4.3 20 155-174 33-52 (54)
85 TIGR01478 STEVOR variant surfa 48.2 19 0.00042 30.3 3.0 17 195-211 266-282 (295)
86 COG4064 MtrG Tetrahydromethano 48.1 76 0.0017 20.7 7.9 29 157-187 22-50 (75)
87 PF01601 Corona_S2: Coronaviru 47.6 4.9 0.00011 37.2 -0.6 13 109-121 481-493 (610)
88 PHA02844 putative transmembran 47.5 17 0.00038 24.0 2.1 13 194-206 51-63 (75)
89 COG4327 Predicted membrane pro 46.6 40 0.00086 23.4 3.8 31 180-210 6-36 (101)
90 KOG4782 Predicted membrane pro 46.5 62 0.0013 22.5 4.7 39 167-205 28-70 (108)
91 PTZ00370 STEVOR; Provisional 46.4 21 0.00046 30.1 3.0 16 196-211 263-278 (296)
92 PHA03011 hypothetical protein; 46.2 1E+02 0.0022 21.7 6.5 57 110-169 62-118 (120)
93 KOG3287 Membrane trafficking p 46.1 1.6E+02 0.0035 23.9 8.2 58 144-201 150-212 (236)
94 cd00193 t_SNARE Soluble NSF (N 44.9 68 0.0015 19.2 7.5 44 129-172 6-49 (60)
95 smart00397 t_SNARE Helical reg 44.7 72 0.0016 19.5 7.7 44 129-172 12-55 (66)
96 PRK13664 hypothetical protein; 44.7 45 0.00098 20.9 3.5 16 187-202 2-17 (62)
97 COG1969 HyaC Ni,Fe-hydrogenase 44.2 21 0.00045 28.5 2.4 37 181-217 96-150 (227)
98 PF08372 PRT_C: Plant phosphor 44.1 1.3E+02 0.0029 23.0 6.8 12 180-191 82-93 (156)
99 PF05527 DUF758: Domain of unk 44.0 49 0.0011 26.1 4.5 78 70-157 108-185 (186)
100 PF12751 Vac7: Vacuolar segreg 43.5 26 0.00056 30.8 3.1 23 184-206 294-316 (387)
101 PF01102 Glycophorin_A: Glycop 42.7 35 0.00075 25.0 3.3 17 194-210 66-82 (122)
102 PF02038 ATP1G1_PLM_MAT8: ATP1 42.3 63 0.0014 19.7 3.8 16 189-204 11-26 (50)
103 PF00558 Vpu: Vpu protein; In 42.2 33 0.0007 23.2 2.8 20 194-213 6-25 (81)
104 KOG2635 Medium subunit of clat 41.9 2.7E+02 0.0058 25.2 11.5 33 45-77 46-78 (512)
105 PF15339 Afaf: Acrosome format 41.6 43 0.00094 26.0 3.7 24 192-215 128-152 (200)
106 KOG0994 Extracellular matrix g 41.6 2.8E+02 0.006 28.6 9.8 53 132-184 1664-1716(1758)
107 PF03302 VSP: Giardia variant- 41.3 17 0.00038 32.2 1.8 12 205-216 384-395 (397)
108 TIGR01732 tiny_TM_bacill conse 40.6 29 0.00063 18.0 1.8 6 205-210 16-21 (26)
109 PF11675 DUF3271: Protein of u 40.3 1.1E+02 0.0024 25.1 6.1 55 3-60 28-82 (249)
110 PF03904 DUF334: Domain of unk 40.1 2.1E+02 0.0045 23.4 8.9 20 189-208 149-168 (230)
111 PHA03054 IMV membrane protein; 40.1 25 0.00053 23.0 1.9 18 188-205 45-62 (72)
112 PF06695 Sm_multidrug_ex: Puta 40.0 1.4E+02 0.0031 21.6 6.2 14 185-198 65-78 (121)
113 COG5547 Small integral membran 39.9 43 0.00093 21.1 2.9 15 188-202 3-17 (62)
114 KOG2740 Clathrin-associated pr 38.8 1.1E+02 0.0024 26.9 6.1 44 51-94 53-96 (418)
115 PF12575 DUF3753: Protein of u 38.7 43 0.00094 22.1 2.9 9 137-145 23-31 (72)
116 KOG3202 SNARE protein TLG1/Syn 38.5 1.3E+02 0.0028 24.7 6.3 56 130-185 153-208 (235)
117 PF06008 Laminin_I: Laminin Do 38.4 1.9E+02 0.0041 23.9 7.5 48 131-178 54-101 (264)
118 PHA02819 hypothetical protein; 38.1 28 0.00061 22.8 2.0 10 194-203 49-58 (71)
119 PRK10573 type IV pilin biogene 38.1 2.2E+02 0.0048 24.9 8.4 19 194-212 372-390 (399)
120 PF10031 DUF2273: Small integr 38.0 46 0.00099 20.3 2.8 12 187-198 2-13 (51)
121 PHA02975 hypothetical protein; 37.9 46 0.001 21.7 2.9 12 194-205 47-58 (69)
122 PHA03386 P10 fibrous body prot 37.8 93 0.002 21.6 4.5 16 129-144 19-34 (94)
123 PF00517 GP41: Retroviral enve 37.5 1.7E+02 0.0037 23.3 6.9 11 135-145 107-117 (204)
124 PF14914 LRRC37AB_C: LRRC37A/B 37.4 31 0.00067 26.1 2.3 11 192-202 119-129 (154)
125 PF14992 TMCO5: TMCO5 family 36.7 2.6E+02 0.0057 23.6 12.1 15 182-196 208-222 (280)
126 PF07439 DUF1515: Protein of u 36.5 1.6E+02 0.0035 21.1 9.5 48 130-177 9-60 (112)
127 PF13980 UPF0370: Uncharacteri 36.4 53 0.0011 20.7 2.9 13 187-199 2-14 (63)
128 PF04628 Sedlin_N: Sedlin, N-t 36.3 1.7E+02 0.0037 21.4 8.8 48 46-93 55-106 (132)
129 PF13937 DUF4212: Domain of un 36.1 1.1E+02 0.0023 20.7 4.6 25 184-208 3-27 (81)
130 PLN03223 Polycystin cation cha 35.9 93 0.002 32.2 5.9 44 128-171 1580-1623(1634)
131 KOG3385 V-SNARE [Intracellular 35.7 49 0.0011 23.9 3.1 11 201-211 104-114 (118)
132 PRK10884 SH3 domain-containing 35.4 2.3E+02 0.0051 22.7 11.6 10 163-172 145-154 (206)
133 PF10504 DUF2452: Protein of u 35.1 2.1E+02 0.0045 22.0 6.6 44 131-180 32-75 (159)
134 PF10039 DUF2275: Predicted in 35.0 72 0.0016 25.9 4.3 24 181-204 23-46 (218)
135 COG3524 KpsE Capsule polysacch 34.8 76 0.0017 27.2 4.5 17 129-145 230-246 (372)
136 COG4499 Predicted membrane pro 34.4 66 0.0014 28.4 4.2 29 31-59 40-69 (434)
137 PF08999 SP_C-Propep: Surfacta 34.3 64 0.0014 21.8 3.2 20 191-210 32-51 (93)
138 KOG2662 Magnesium transporters 34.2 2.3E+02 0.005 25.2 7.5 25 191-215 383-407 (414)
139 PHA02673 ORF109 EEV glycoprote 34.1 1.3E+02 0.0029 23.0 5.3 11 183-193 23-33 (161)
140 PF00306 ATP-synt_ab_C: ATP sy 34.0 1E+02 0.0023 21.7 4.7 41 145-185 3-45 (113)
141 PF14004 DUF4227: Protein of u 33.6 75 0.0016 20.9 3.5 23 187-209 2-24 (71)
142 PRK10299 PhoPQ regulatory prot 33.6 40 0.00086 20.2 1.9 24 191-214 3-28 (47)
143 KOG0811 SNARE protein PEP12/VA 33.6 2.9E+02 0.0063 23.2 9.0 15 176-190 224-238 (269)
144 PRK15326 type III secretion sy 33.1 1.5E+02 0.0033 20.0 4.9 46 81-140 8-53 (80)
145 PF04888 SseC: Secretion syste 32.9 3E+02 0.0065 23.1 9.1 23 147-169 30-52 (306)
146 KOG0972 Huntingtin interacting 32.5 1.4E+02 0.0031 25.4 5.7 16 78-93 246-261 (384)
147 TIGR03545 conserved hypothetic 32.1 2.6E+02 0.0057 26.1 8.0 51 128-178 190-240 (555)
148 PF12420 DUF3671: Protein of u 31.6 1.9E+02 0.0041 20.4 6.1 18 186-203 39-56 (104)
149 PF03670 UPF0184: Uncharacteri 31.3 1.1E+02 0.0025 20.7 4.1 30 158-187 41-70 (83)
150 PF13706 PepSY_TM_3: PepSY-ass 31.0 92 0.002 17.4 3.2 13 188-200 4-16 (37)
151 PF10168 Nup88: Nuclear pore c 30.9 4.3E+02 0.0092 25.6 9.4 26 136-161 589-614 (717)
152 PF10504 DUF2452: Protein of u 30.7 51 0.0011 25.3 2.6 54 29-82 65-125 (159)
153 KOG0862 Synaptobrevin/VAMP-lik 30.0 3E+02 0.0065 22.3 9.4 66 130-197 119-195 (216)
154 PRK09697 protein secretion pro 29.8 45 0.00098 24.0 2.1 28 185-214 17-44 (139)
155 PF05399 EVI2A: Ectropic viral 29.7 43 0.00093 26.9 2.1 9 193-201 127-135 (227)
156 PRK10381 LPS O-antigen length 29.6 82 0.0018 27.7 4.1 16 186-201 34-49 (377)
157 PF01708 Gemini_mov: Geminivir 29.1 19 0.00041 24.8 0.1 26 189-214 34-59 (91)
158 PF03555 Flu_C_NS2: Influenza 28.8 1.2E+02 0.0025 18.1 3.3 32 143-174 5-37 (57)
159 PRK14125 cell division suppres 28.8 88 0.0019 22.1 3.4 15 186-200 2-16 (103)
160 PF08858 IDEAL: IDEAL domain; 28.8 1.1E+02 0.0024 17.2 3.3 18 141-158 10-27 (37)
161 PF03238 ESAG1: ESAG protein; 28.3 2.1E+02 0.0045 23.2 5.7 55 147-201 7-61 (231)
162 KOG3208 SNARE protein GS28 [In 28.2 3.3E+02 0.0072 22.2 9.9 28 183-210 199-228 (231)
163 KOG3065 SNAP-25 (synaptosome-a 28.0 3E+02 0.0066 23.1 7.0 44 130-173 219-262 (273)
164 PTZ00382 Variant-specific surf 27.9 33 0.00071 23.9 1.1 12 205-216 83-94 (96)
165 PRK15348 type III secretion sy 27.2 1.2E+02 0.0027 25.1 4.5 26 180-205 209-234 (249)
166 PF13908 Shisa: Wnt and FGF in 27.2 31 0.00066 26.8 1.0 14 201-214 84-97 (179)
167 PF13044 DUF3904: Protein of u 27.1 2.3E+02 0.0049 23.7 5.9 34 181-214 401-435 (436)
168 PF13172 PepSY_TM_1: PepSY-ass 27.0 1.2E+02 0.0025 16.5 3.8 16 185-200 2-17 (34)
169 PRK00807 50S ribosomal protein 27.0 84 0.0018 19.2 2.7 23 38-60 10-32 (52)
170 PF00429 TLV_coat: ENV polypro 26.9 1.2E+02 0.0025 28.4 4.8 22 128-149 441-462 (561)
171 PF07438 DUF1514: Protein of u 26.8 64 0.0014 20.7 2.2 9 195-203 2-10 (66)
172 PF05659 RPW8: Arabidopsis bro 26.6 1E+02 0.0022 23.3 3.7 14 180-193 85-98 (147)
173 PRK12430 putative bifunctional 26.3 1.2E+02 0.0026 26.7 4.4 36 162-197 106-141 (379)
174 PF00664 ABC_membrane: ABC tra 26.3 3.1E+02 0.0067 21.2 11.9 25 130-154 164-188 (275)
175 PF04999 FtsL: Cell division p 26.0 1.7E+02 0.0036 20.0 4.5 10 201-210 23-32 (97)
176 KOG4827 Uncharacterized conser 26.0 45 0.00098 26.5 1.7 20 185-204 238-257 (279)
177 PF04799 Fzo_mitofusin: fzo-li 25.9 3.2E+02 0.0069 21.3 7.6 46 133-178 120-165 (171)
178 PF05440 MtrB: Tetrahydrometha 25.8 82 0.0018 22.1 2.7 19 188-206 75-93 (97)
179 PHA02692 hypothetical protein; 25.8 52 0.0011 21.5 1.6 8 138-145 24-31 (70)
180 KOG3220 Similar to bacterial d 25.5 3.1E+02 0.0066 22.3 6.2 55 110-168 136-190 (225)
181 cd07634 BAR_GAP10-like The Bin 25.4 2.3E+02 0.005 22.8 5.6 71 78-153 14-94 (207)
182 COG1459 PulF Type II secretory 25.2 3.8E+02 0.0082 23.8 7.5 15 151-165 130-144 (397)
183 KOG3230 Vacuolar assembly/sort 25.1 2.7E+02 0.0058 22.3 5.8 21 136-156 133-153 (224)
184 KOG3658 Tumor necrosis factor- 24.9 93 0.002 29.6 3.7 29 187-215 677-705 (764)
185 COG1340 Uncharacterized archae 24.9 4.4E+02 0.0095 22.5 10.9 46 129-182 138-183 (294)
186 PHA02947 S-S bond formation pa 24.9 67 0.0015 25.9 2.5 19 192-210 177-195 (215)
187 KOG4460 Nuclear pore complex, 24.8 2.9E+02 0.0062 25.9 6.6 13 79-91 529-541 (741)
188 PF10112 Halogen_Hydrol: 5-bro 24.7 3.4E+02 0.0074 21.2 6.6 23 129-151 156-178 (199)
189 PF13040 DUF3901: Protein of u 24.5 1.5E+02 0.0033 17.1 3.5 26 142-167 9-34 (40)
190 PF04048 Sec8_exocyst: Sec8 ex 24.5 3E+02 0.0065 20.4 7.1 11 74-84 23-33 (142)
191 PF03607 DCX: Doublecortin; I 24.4 1.2E+02 0.0025 18.9 3.1 48 25-72 8-58 (60)
192 cd01617 DCX Ubiquitin-like dom 24.4 1.4E+02 0.003 19.8 3.7 49 25-73 25-78 (80)
193 PF10875 DUF2670: Protein of u 24.0 83 0.0018 23.0 2.6 26 187-212 18-43 (139)
194 COG3771 Predicted membrane pro 23.8 58 0.0013 22.4 1.6 13 205-217 51-63 (97)
195 COG1723 Uncharacterized conser 23.7 1.5E+02 0.0033 25.5 4.5 64 150-217 266-331 (331)
196 PF02520 DUF148: Domain of unk 23.0 2.8E+02 0.006 19.5 6.3 62 84-156 2-63 (113)
197 PHA01811 hypothetical protein 22.6 1.1E+02 0.0023 19.6 2.6 18 44-61 5-22 (78)
198 COG3074 Uncharacterized protei 22.5 2.4E+02 0.0051 18.5 8.0 46 128-173 17-62 (79)
199 PF06422 PDR_CDR: CDR ABC tran 22.3 1.1E+02 0.0025 21.4 3.1 26 175-200 35-60 (103)
200 PF04155 Ground-like: Ground-l 22.3 1.3E+02 0.0029 19.6 3.2 12 140-151 10-21 (76)
201 PF06143 Baculo_11_kDa: Baculo 22.0 2.1E+02 0.0046 19.5 4.1 11 185-195 29-39 (84)
202 PF13163 DUF3999: Protein of u 21.9 79 0.0017 28.3 2.7 22 189-210 406-427 (429)
203 PF12277 DUF3618: Protein of u 21.9 1.9E+02 0.0041 17.2 5.4 27 131-157 5-31 (49)
204 PF10392 COG5: Golgi transport 21.8 3.3E+02 0.0071 19.9 8.7 40 145-184 53-92 (132)
205 PRK13865 type IV secretion sys 21.7 4.2E+02 0.0091 21.6 6.6 7 172-178 21-27 (229)
206 PF06789 UPF0258: Uncharacteri 21.5 58 0.0013 24.8 1.5 25 187-211 125-149 (159)
207 PRK11901 hypothetical protein; 21.3 1E+02 0.0022 26.6 3.0 18 196-213 40-57 (327)
208 TIGR02338 gimC_beta prefoldin, 21.2 3E+02 0.0066 19.3 5.8 35 135-172 62-96 (110)
209 PF11157 DUF2937: Protein of u 21.1 3.4E+02 0.0073 20.9 5.7 23 154-176 75-97 (167)
210 cd00472 Ribosomal_L24e_L24 Rib 21.0 1.2E+02 0.0026 18.8 2.5 23 38-60 12-34 (54)
211 KOG4111 Translocase of outer m 21.0 3.4E+02 0.0074 20.2 5.3 33 178-210 68-101 (136)
212 PRK14891 50S ribosomal protein 21.0 1E+02 0.0022 22.7 2.6 24 37-60 12-35 (131)
213 PF12279 DUF3619: Protein of u 21.0 1.7E+02 0.0037 21.7 3.8 19 185-203 67-85 (131)
214 KOG1655 Protein involved in va 20.8 3E+02 0.0065 22.0 5.3 36 135-170 110-146 (218)
215 TIGR00869 sec62 protein transl 20.7 2.2E+02 0.0048 23.3 4.8 11 205-215 170-180 (232)
216 TIGR01478 STEVOR variant surfa 20.7 81 0.0017 26.7 2.3 28 129-156 103-131 (295)
217 PF08113 CoxIIa: Cytochrome c 20.6 1.4E+02 0.0031 16.5 2.5 7 205-211 18-24 (34)
218 PRK05529 cell division protein 20.6 89 0.0019 25.8 2.5 18 182-199 26-43 (255)
219 PF00523 Fusion_gly: Fusion gl 20.3 86 0.0019 28.7 2.5 16 129-145 432-447 (490)
220 PF02937 COX6C: Cytochrome c o 20.1 2.4E+02 0.0051 18.6 4.0 24 187-210 12-35 (73)
No 1
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-69 Score=413.19 Aligned_cols=214 Identities=77% Similarity=1.173 Sum_probs=208.3
Q ss_pred cceEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCC-CCeeEEEECCeEEEEEeeCCEEEEEEecCCcccchHHHHH
Q 027759 4 QSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPAT-NNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFL 82 (219)
Q Consensus 4 ~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~-~~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~af~fL 82 (219)
|+|+|+.||||++|||||++.+|||..++.++|+|+|++ ++|++|++|+|+|||+.+||++|+|++|++.++++||.||
T Consensus 1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL 80 (217)
T KOG0859|consen 1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL 80 (217)
T ss_pred CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence 689999999999999999999999999999999999998 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHH
Q 027759 83 ERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162 (219)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l 162 (219)
++|++.|.+.|+ ...+++.+|+++++|++.|++.|++|.++|+ .|++.+++.+++|||++|.+|||++++|||+||.|
T Consensus 81 e~Ik~~F~k~YG-~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~eNIekvldRGekiELL 158 (217)
T KOG0859|consen 81 ERIKEDFKKRYG-GGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELL 158 (217)
T ss_pred HHHHHHHHHHhc-cchhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEee
Confidence 999999999996 4578889999999999999999999999998 69999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 027759 163 VDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALILIIVLSVCHGFKC 219 (219)
Q Consensus 163 ~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~i~~~~C~gf~c 219 (219)
++||++|+.+|..|++++++++|+|||+|.|+++++++++++++++|++.+||||.|
T Consensus 159 VdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iyiiv~~~CgG~~~ 215 (217)
T KOG0859|consen 159 VDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIYIIVARRCGGFTC 215 (217)
T ss_pred echhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHHHHHHHhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999987
No 2
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-34 Score=223.64 Aligned_cols=193 Identities=22% Similarity=0.443 Sum_probs=171.4
Q ss_pred ceEEEEEEe--CCeEEEeecC-C--CCC----HHHHHHHHhccCCCC-CCeeEEEECCeEEEEEeeCCEEEEEEecCCcc
Q 027759 5 SLIYSFVAR--GTVILAEYTE-F--TGN----FTSIASQCLQKLPAT-NNKFTYNCDGHTFNYLVENGFTYCVVAVESAG 74 (219)
Q Consensus 5 ~i~Ya~Iar--~~~iLae~~~-~--~~~----~~~ia~~il~ki~~~-~~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~ 74 (219)
+|++++|+| ++.||+...+ . +++ +++.++.+++++.+. +++.|.+.++|.|||++++|++|+++||.+||
T Consensus 1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP 80 (216)
T KOG0862|consen 1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP 80 (216)
T ss_pred CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence 589999999 5699986543 1 233 367899999999988 78999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCcc-ccccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHH
Q 027759 75 RQIPIAFLERVKEDFNKRYGGGKAA-TAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVL 153 (219)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~-~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl 153 (219)
+.+||.||+++.++|.+.++..... .+.||++ .+|++.|++.-++|| |+...+.+.++.+++.+|+.+|.+||+.++
T Consensus 81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~F-ieFD~~IQk~Kk~yn-d~r~~~n~~~~n~el~~v~~im~~niedvl 158 (216)
T KOG0862|consen 81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAF-IEFDTFIQKTKKRYN-DTRSQRNLLKLNQELQDVQRIMVENLEDVL 158 (216)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCccCCCeeE-EehhHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999654433 5789999 899999999999995 666569999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH
Q 027759 154 DRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVL 199 (219)
Q Consensus 154 ~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~ 199 (219)
.|||.|+.+...+.+|+..|+..+++|+.++++..|.+|..+..++
T Consensus 159 ~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~ 204 (216)
T KOG0862|consen 159 QRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFF 204 (216)
T ss_pred hhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998444333
No 3
>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.1e-33 Score=207.47 Aligned_cols=177 Identities=20% Similarity=0.314 Sum_probs=149.5
Q ss_pred cceEEEEEEeC----CeEEEeecC------CC-CCH----HHHHHHHhccCCCCCCeeEEEECCeEEEEE-eeCCEEEEE
Q 027759 4 QSLIYSFVARG----TVILAEYTE------FT-GNF----TSIASQCLQKLPATNNKFTYNCDGHTFNYL-VENGFTYCV 67 (219)
Q Consensus 4 ~~i~Ya~Iar~----~~iLae~~~------~~-~~~----~~ia~~il~ki~~~~~k~~~~~~~~~~~~l-~~~~~~~~~ 67 (219)
|.|++..|-+. ..+|+.-++ +. ++. .-+++.+.++.+|+ .+++++.++|..|.. ..||+++++
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dls~FsfFqRssV~Efm~F~sktvaeRt~~g-~rqsvk~~~Y~~h~yvrndgL~~V~ 79 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDLSSFSFFQRSSVQEFMTFISKTVAERTGPG-QRQSVKHEEYLVHVYVRNDGLCGVL 79 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhcccccccceeeccHHHHHHHHHHHHHHhcCcc-cccccccceeEEEEEEecCCeeEEE
Confidence 56777777774 244554322 21 332 34789999999998 588999999999955 467999999
Q ss_pred EecCCcccchHHHHHHHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHH
Q 027759 68 VAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMME 147 (219)
Q Consensus 68 vtd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~ 147 (219)
++|.+||.|+||.+|.++.++|....++.+|+...+..+ +| |.|...+.+| +||.++|++.++|+++||+|.||.+
T Consensus 80 ~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~~~~~~~--~~-~~L~~~l~ky-qdP~ead~l~kvQ~EldETKiiLhk 155 (198)
T KOG0861|consen 80 IADDEYPVRVAFTLLNKVLDEFTTKVPATQWPVGETADL--SY-PYLDTLLSKY-QDPAEADPLLKVQNELDETKIILHK 155 (198)
T ss_pred EecCcCchhHHHHHHHHHHHHHhhcCcccccCcCCCcCC--Cc-hhHHHHHHHh-cChhhhChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988888888985444332 33 7899999999 8999999999999999999999999
Q ss_pred hHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Q 027759 148 NIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRR 185 (219)
Q Consensus 148 Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~ 185 (219)
.|+.+|+|||+||+|++||++|+.+|+.|+++|||.++
T Consensus 156 TiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~Ns 193 (198)
T KOG0861|consen 156 TIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTNS 193 (198)
T ss_pred HHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999988663
No 4
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.7e-29 Score=177.95 Aligned_cols=87 Identities=40% Similarity=0.710 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALIL 207 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~ 207 (219)
.+++.++|+++|||++||++|++|+|||||||++|++||++|++.|..|++.|.++||+|||+|.|+.++++++++++++
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~ 107 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLV 107 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHhc
Q 027759 208 IIVLSVC 214 (219)
Q Consensus 208 ~i~~~~C 214 (219)
+|++++-
T Consensus 108 iiii~~~ 114 (116)
T KOG0860|consen 108 VIIIYIF 114 (116)
T ss_pred HHHHHHh
Confidence 8877653
No 5
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.96 E-value=3e-29 Score=175.44 Aligned_cols=88 Identities=47% Similarity=0.826 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALIL 207 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~ 207 (219)
.|++.++++++++|+++|.+|++++++|||+|++|+++|++|+++|..|+++|++++|++||+++|++++++++++++++
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~i~~~iv~~~~~ 81 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYIIIIIIVIIIIL 81 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 027759 208 IIVLSVCH 215 (219)
Q Consensus 208 ~i~~~~C~ 215 (219)
+|++++||
T Consensus 82 ~i~~~~~g 89 (89)
T PF00957_consen 82 IIIIVICG 89 (89)
T ss_dssp HHHHTT--
T ss_pred HHHHHHhC
Confidence 99999996
No 6
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.91 E-value=4.5e-23 Score=159.14 Aligned_cols=181 Identities=23% Similarity=0.300 Sum_probs=140.8
Q ss_pred ceEEEEEEeCC--eEEEe-ecCCCCCH--HHHHHHHhccCCCC-CCeeEEEECCeEEEEEee-CCEEEEEEecCCcccch
Q 027759 5 SLIYSFVARGT--VILAE-YTEFTGNF--TSIASQCLQKLPAT-NNKFTYNCDGHTFNYLVE-NGFTYCVVAVESAGRQI 77 (219)
Q Consensus 5 ~i~Ya~Iar~~--~iLae-~~~~~~~~--~~ia~~il~ki~~~-~~k~~~~~~~~~~~~l~~-~~~~~~~vtd~~~~~~~ 77 (219)
.++|..+..+. .+|++ ++..+..| ...+..+|..+.|. .++.+++.+++.|||... +|++|+|+++++||.++
T Consensus 2 ~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~l 81 (190)
T COG5143 2 ASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNKL 81 (190)
T ss_pred ceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchhh
Confidence 35555666664 33443 22222222 34566777776655 346678889999999875 59999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCcc-ccccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhhh
Q 027759 78 PIAFLERVKEDFNKRYGGGKAA-TAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRG 156 (219)
Q Consensus 78 af~fL~~i~~~f~~~~~~~~~~-~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rg 156 (219)
|+..++++..+|........+. +..++.+ .+|++.+.+ . | ++|...|++.+++.++++|+.+|.+|++++|+||
T Consensus 82 a~~~~~~~~~~~~~s~~~~~~~d~~~~~~~-~~~d~~~e~--~-y-~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ 156 (190)
T COG5143 82 AYGYLNSIATEFLKSSALEQLIDDTVGIMR-VNIDKVIEK--G-Y-RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRD 156 (190)
T ss_pred hhHHHHhhccHhhhhhhHhhcccCccchhh-hhHHHHHHh--h-c-CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999998887666444433 3333333 456666665 2 6 6888889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHH
Q 027759 157 EKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQ 190 (219)
Q Consensus 157 e~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~ 190 (219)
|+|+.|+++|+.|...|+.|+++|++.+..+||+
T Consensus 157 ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~~~~ 190 (190)
T COG5143 157 EKLDLLVDLSSILLLSSKMFPKSAKKSNLCCLIN 190 (190)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhheeC
Confidence 9999999999999999999999999999999994
No 7
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=99.80 E-value=5.6e-19 Score=121.82 Aligned_cols=81 Identities=35% Similarity=0.678 Sum_probs=73.1
Q ss_pred HHHHHhccCCCCC-CeeEEEECCeEEEEEeeCCEEEEEEecCCcccchHHHHHHHHHHHHhhhcCCCCccccccccchHH
Q 027759 31 IASQCLQKLPATN-NKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKE 109 (219)
Q Consensus 31 ia~~il~ki~~~~-~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~ 109 (219)
+|+++|+++++.+ +|.+++.+++.|||++++|++|+|+||++||+++||.||++|+++|.+.++...+.++.++++ .+
T Consensus 1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~ 79 (83)
T PF13774_consen 1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE 79 (83)
T ss_dssp HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence 5889999999665 899999999999999999999999999999999999999999999999997677888889999 88
Q ss_pred HhH
Q 027759 110 FGS 112 (219)
Q Consensus 110 f~~ 112 (219)
|++
T Consensus 80 F~~ 82 (83)
T PF13774_consen 80 FDS 82 (83)
T ss_dssp HHH
T ss_pred cCC
Confidence 875
No 8
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=97.95 E-value=3.7e-05 Score=60.06 Aligned_cols=78 Identities=23% Similarity=0.336 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027759 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALIL 207 (219)
Q Consensus 130 kl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~ 207 (219)
+...++...++++.+|..|+|++++||++...+.|+.++|+.+++.|++-+.+...++|||.-|+-.+++....+..-
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~ 172 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLS 172 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999999999999999999999999999998888776555433
No 9
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=96.91 E-value=0.04 Score=37.93 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~ 208 (219)
++++.++..+.+.-+.+.++=+++=+=.++-+.|.+.|+....+|...++.. +...++-+-+.+++.+++++++++
T Consensus 10 ~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~----~~~~~k~~~i~~~iv~~~~~~i~~ 85 (89)
T PF00957_consen 10 EQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM----WWRNYKLYIIIIIIVIIIILIIII 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHhHHhhhhhhhhHHHH
Confidence 4555556555555555555555555556666777788888888888876643 333344555555555555555554
Q ss_pred H
Q 027759 209 I 209 (219)
Q Consensus 209 i 209 (219)
.
T Consensus 86 ~ 86 (89)
T PF00957_consen 86 V 86 (89)
T ss_dssp T
T ss_pred H
Confidence 4
No 10
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.86 E-value=0.064 Score=37.30 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=48.1
Q ss_pred HHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHh----------HHHHHHHHHHHHhHHHHHHHHHH
Q 027759 133 KVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQ----------GTKMRRKMWIQNMKIKLIVLGII 202 (219)
Q Consensus 133 ~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~----------a~~l~~~~~~~~~k~~~ii~~vv 202 (219)
.+-+.+..++..|.+.+++- ...++.|.+.|+.|......|..- -+++.|+.|.-++-+++.+++++
T Consensus 5 ~vT~~L~rt~~~m~~ev~~s---~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~ 81 (92)
T PF03908_consen 5 DVTESLRRTRQMMAQEVERS---ELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFL 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45566677777777766543 455666777777776554444332 25566777777777777777777
Q ss_pred HHHHHHHH
Q 027759 203 IALILIIV 210 (219)
Q Consensus 203 ~~~~~~i~ 210 (219)
++++||+|
T Consensus 82 ~~v~yI~~ 89 (92)
T PF03908_consen 82 LVVLYILW 89 (92)
T ss_pred HHHHHHhh
Confidence 77777665
No 11
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.026 Score=47.00 Aligned_cols=46 Identities=15% Similarity=0.297 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQ 174 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~ 174 (219)
+.+.+++.++.||.+|+.+==..|=+-|+.+|.+++.-++.+.+..
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nve 225 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVE 225 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHH
Confidence 6788999999999999998777788999999999988888776533
No 12
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.042 Score=46.49 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHH---HHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLR---SQAQDFRQQGTKMRRKMWIQNMKIKLIVLGI 201 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~---~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~v 201 (219)
+.+.++++.+.|++++-.+=--.+-..||.+|.++...++-. .++.+=-++|.+..++.. ++|+++|++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaR--K~k~i~ii~~i 279 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKAR--KWKIIIIIILI 279 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hceeeeehHHH
Confidence 667788889999999877766778889999888876554443 333333344555555442 33444444333
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.99 E-value=0.081 Score=42.74 Aligned_cols=77 Identities=16% Similarity=0.305 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH---HHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027759 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ---AQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 130 kl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~---s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~ 206 (219)
.+.++++-+.|+.+...+=-+.+.++.|.+|.+.+..++-+.+ +..-..+|-+-.|+...+++.-|+|+++++|+++
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv 265 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIV 265 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHH
Confidence 4566667777777776666678899999999998888776543 2223333444455555555555555554444433
No 14
>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.
Probab=94.79 E-value=0.06 Score=45.12 Aligned_cols=64 Identities=20% Similarity=0.346 Sum_probs=41.0
Q ss_pred HHHHHHHhccCCCCCCeeEEEECCeEEEEEeeC--CEEEEEEecCCcccchHHHHHHHHHHHHhhhcC
Q 027759 29 TSIASQCLQKLPATNNKFTYNCDGHTFNYLVEN--GFTYCVVAVESAGRQIPIAFLERVKEDFNKRYG 94 (219)
Q Consensus 29 ~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~--~~~~~~vtd~~~~~~~af~fL~~i~~~f~~~~~ 94 (219)
..+++.+|-.=.. ...+|++++|..+|...+ +++|++|-..-..-..+=.||+.|+..|...|.
T Consensus 5 n~LI~~vlleeR~--~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~ 70 (279)
T PF04086_consen 5 NALIRDVLLEERS--GNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYK 70 (279)
T ss_dssp HHHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHhheeecc--CCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHh
Confidence 4556666532222 234689999999988765 799999999888888888999999999999885
No 15
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=94.64 E-value=0.97 Score=31.29 Aligned_cols=40 Identities=5% Similarity=0.098 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhh
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~ 168 (219)
+.+....+.+.+.-+-...|++.+.+.-+.|..+.+.=.+
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~ 47 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDG 47 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444555554455555555555555555555544333
No 16
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=93.24 E-value=1.7 Score=35.84 Aligned_cols=41 Identities=17% Similarity=0.481 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHhHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHH
Q 027759 167 ENLRSQAQDFRQQGTKMRRK---MWIQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 167 ~~L~~~s~~f~~~a~~l~~~---~~~~~~k~~~ii~~vv~~~~~~i 209 (219)
+.+..+...+.+.+.+++.. .|+ ++.|+++++|++++++.|
T Consensus 202 ~~~d~n~~~l~~~~~rl~~~~~~~~~--~~~~~~i~~v~~~Fi~mv 245 (251)
T PF09753_consen 202 EGLDRNLSSLKRESKRLKEHSSKSWG--CWTWLMIFVVIIVFIMMV 245 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHH
Confidence 33334444455544444432 233 555555555544444433
No 17
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=0.28 Score=44.03 Aligned_cols=86 Identities=16% Similarity=0.295 Sum_probs=63.4
Q ss_pred EEEEEEeCCeEEEeecCCCCCH----HHHHHHHhccCCCCCCeeEEEECCeEEEEEee--CCEEEEEEecCCcccchHHH
Q 027759 7 IYSFVARGTVILAEYTEFTGNF----TSIASQCLQKLPATNNKFTYNCDGHTFNYLVE--NGFTYCVVAVESAGRQIPIA 80 (219)
Q Consensus 7 ~Ya~Iar~~~iLae~~~~~~~~----~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~--~~~~~~~vtd~~~~~~~af~ 80 (219)
.++.+.+|+.||..|.....+| ..+.+.+|-.-.. .-.+++.+.|+.-|-.+ -+++|+|+-.+-..-..+-.
T Consensus 4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~er~--~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~~ 81 (587)
T KOG0781|consen 4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSERG--GVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVDK 81 (587)
T ss_pred eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHhhc--CcccCchhheeEeeeecCCccEEEEEEEeccchhhhHHH
Confidence 5788899999999998765554 4444544422111 12237778888777654 47999999988888888889
Q ss_pred HHHHHHHHHhhhcC
Q 027759 81 FLERVKEDFNKRYG 94 (219)
Q Consensus 81 fL~~i~~~f~~~~~ 94 (219)
||+++.+.|...|.
T Consensus 82 ll~~v~~~f~e~~~ 95 (587)
T KOG0781|consen 82 LLNDVLNLFREKYD 95 (587)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998884
No 18
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.34 E-value=4.2 Score=29.40 Aligned_cols=24 Identities=8% Similarity=0.279 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHh
Q 027759 156 GEKIELLVDKTENLRSQAQDFRQQ 179 (219)
Q Consensus 156 ge~L~~l~~ks~~L~~~s~~f~~~ 179 (219)
++|-|.|.+-|+.-...|...++.
T Consensus 63 ~drad~L~~~as~F~~~A~klkrk 86 (116)
T KOG0860|consen 63 DDRADQLQAGASQFEKTAVKLKRK 86 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566667888888888877663
No 19
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=89.61 E-value=3.9 Score=27.24 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 027759 157 EKIELLVDKTENLRSQAQDFRQQGTKMRRKM 187 (219)
Q Consensus 157 e~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (219)
+|||.+++|-|. .+|.-|++..+++-|..
T Consensus 22 ~rLD~iEeKVEf--tn~Ei~Qr~GkkvGRDi 50 (77)
T PRK01026 22 KRLDEIEEKVEF--TNAEIFQRIGKKVGRDI 50 (77)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 445555555554 34667778778877665
No 20
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=89.49 E-value=5.7 Score=29.83 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=37.6
Q ss_pred HHHhccCCCC---------CCeeEEEECCeEEEEEe-eCCEEEEEEecCCcccchHHHHHHHHHHHHhhh
Q 027759 33 SQCLQKLPAT---------NNKFTYNCDGHTFNYLV-ENGFTYCVVAVESAGRQIPIAFLERVKEDFNKR 92 (219)
Q Consensus 33 ~~il~ki~~~---------~~k~~~~~~~~~~~~l~-~~~~~~~~vtd~~~~~~~af~fL~~i~~~f~~~ 92 (219)
+.+..++.|. ..-.+++.+.|..|+.- -.|+-|+++||++.+. ..-.+++.+.+.|..-
T Consensus 46 ~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dy 114 (142)
T PF04099_consen 46 KAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCFETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDY 114 (142)
T ss_dssp HHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEEE-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccccccceeEEEEEeCCEEEEEEEcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHH
Confidence 4556666662 23557888999999875 5799999999999863 4445566666666443
No 21
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=88.62 E-value=2.9 Score=34.06 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=32.6
Q ss_pred HHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 027759 146 MENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALILIIVLSVC 214 (219)
Q Consensus 146 ~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~i~~~~C 214 (219)
.+|+|.+-..-+....-++....=.+.|-.. +|+- |+..|+=|-+.++++++|++++|-...++.
T Consensus 212 ~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks---aRaa-Rkkki~c~gI~~iii~viv~vv~~v~~~v~ 276 (280)
T COG5074 212 QENVDVIDKNVEDAQENVEQGVGHTDKAVKS---ARAA-RKKKIRCYGICFIIIIVIVVVVFKVVPFVV 276 (280)
T ss_pred cchHHHHHhhHhhHHhhHHHhhhhHHHHHHH---HHHH-HhcceehhhhHHHHHHHHHHHHhcccchhh
Confidence 3455555444433333333222222333333 3333 334456677777777777777776555443
No 22
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=88.47 E-value=5.1 Score=26.09 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 027759 157 EKIELLVDKTENLRSQAQDFRQQGTKMRRKM 187 (219)
Q Consensus 157 e~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (219)
+|||.+++|-|. .+|.-|++..+++-|..
T Consensus 19 ~rLd~iEeKVEf--~~~E~~Qr~Gkk~GRDi 47 (70)
T TIGR01149 19 KRLDEIEEKVEF--VNGEVAQRIGKKVGRDI 47 (70)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHhHHhhhHH
Confidence 455555555554 34566777777777654
No 23
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=88.08 E-value=5.5 Score=25.99 Aligned_cols=30 Identities=20% Similarity=0.363 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 027759 156 GEKIELLVDKTENLRSQAQDFRQQGTKMRRKM 187 (219)
Q Consensus 156 ge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (219)
.+|||.+++|-|. .+|.-+++..+|+-|..
T Consensus 18 ~~rLd~iEeKvEf--~~~Ei~Qr~GkkiGRDi 47 (70)
T PF04210_consen 18 MKRLDEIEEKVEF--TNAEIAQRAGKKIGRDI 47 (70)
T ss_pred HHHHHHHHHHHHh--HHHHHHHHHhHHhhhHH
Confidence 3455566655554 34566777778877665
No 24
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=86.83 E-value=6.7 Score=25.67 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027759 156 GEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 156 ge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~i 209 (219)
.++++.++..++.+.........+-.++.-...| -+.++++++|.+++++|
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW---~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKW---IWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4455555555555555544444444455544433 12355555555555544
No 25
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.83 E-value=0.56 Score=46.30 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=36.9
Q ss_pred HHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHH
Q 027759 144 VMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMW 188 (219)
Q Consensus 144 im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 188 (219)
....--+.+.+|||+|+.++++|++|++.+++|...|.++.-++-
T Consensus 942 ~~~~a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~ 986 (993)
T KOG1983|consen 942 AASGALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYK 986 (993)
T ss_pred hhhhcchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhh
Confidence 334455778999999999999999999999999998877664443
No 26
>PF09426 Nyv1_N: Vacuolar R-SNARE Nyv1 N terminal; InterPro: IPR019005 This entry represents the N-terminal domain of vacuolar R-SNARE Nyv1, which adopts a longin fold []. Vacuolar v-SNARE is required for docking and is only involved in homotypic vacuole fusion. Nyv1 is required for Ca(2+) efflux from the vacuolar lumen, a required signal for subsequent membrane fusion events, by inhibiting vacuolar Ca(2+)-ATPase PMC1 and promoting Ca(2+) release when forming trans-SNARE assemblies during the docking step. In yeast, the N-terminal domain of Nyv1 is sufficient to direct the transport of Nyv1 to limiting membrane of the vacuole []. ; PDB: 2FZ0_A.
Probab=86.44 E-value=1.3 Score=32.77 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=30.7
Q ss_pred ECCeEEEEEe---eCCEEEEEEecCCcccchHHHHHHHHHH
Q 027759 50 CDGHTFNYLV---ENGFTYCVVAVESAGRQIPIAFLERVKE 87 (219)
Q Consensus 50 ~~~~~~~~l~---~~~~~~~~vtd~~~~~~~af~fL~~i~~ 87 (219)
.+||-.+|.. +++-+++|.+..+.|+-++...|.|++.
T Consensus 70 IDGyDCYYTT~~~d~~~vlVCFt~~~vPKILPiRlLSeLK~ 110 (141)
T PF09426_consen 70 IDGYDCYYTTEDNDDNKVLVCFTRVDVPKILPIRLLSELKG 110 (141)
T ss_dssp SSSEEEEE---SS-TTEEEEEEEETTS-SSHHHHHHHHHTT
T ss_pred ccccceeeecccCCCCeEEEEEEecCCcceecHHHHHhhcc
Confidence 4899888876 4689999999999999999999999865
No 27
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=85.26 E-value=13 Score=27.53 Aligned_cols=88 Identities=17% Similarity=0.313 Sum_probs=58.9
Q ss_pred ceEEEEEEe--CCeEEEee-cCCCCC-----HHHHHHHHhccCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCcccc
Q 027759 5 SLIYSFVAR--GTVILAEY-TEFTGN-----FTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQ 76 (219)
Q Consensus 5 ~i~Ya~Iar--~~~iLae~-~~~~~~-----~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~ 76 (219)
||...+|.. |.++++-| ...+.. ++...+.+..+-+.. --.+..+++.+-|..-+++.++++++.+...-
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel 78 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSSRNSKQ--SPIFEHDNYRIVYKRYSDLYFVVVGDENENEL 78 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHTSSSSS--TSEEEETTEEEEEEEETTEEEEEEESSTSBHH
T ss_pred CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHhccccc--ceeeecccceeeeEeeccEEEEEEeecccchH
Confidence 355666665 44666655 322221 333334444332221 23577899999888889999999999999988
Q ss_pred hHHHHHHHHHHHHhhhcC
Q 027759 77 IPIAFLERVKEDFNKRYG 94 (219)
Q Consensus 77 ~af~fL~~i~~~f~~~~~ 94 (219)
....||..+.+.+..-++
T Consensus 79 ~~~e~l~~~v~~l~~~~~ 96 (141)
T PF01217_consen 79 LLLEFLHRLVEVLDDYFG 96 (141)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhhhhhhhc
Confidence 889999998888877664
No 28
>PTZ00478 Sec superfamily; Provisional
Probab=84.94 E-value=4.5 Score=27.33 Aligned_cols=57 Identities=11% Similarity=0.081 Sum_probs=38.5
Q ss_pred HHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027759 152 VLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 152 vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~ 208 (219)
+.+..+.++.+.+...+.-.+|.+|-+..+|=.|+-+.+-.+...+-.+++-++-|+
T Consensus 9 ~~~~m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy~ 65 (81)
T PTZ00478 9 LTDKSNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGYS 65 (81)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455567777777777788888888888888888877777666555444444333
No 29
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=84.19 E-value=17 Score=30.41 Aligned_cols=43 Identities=14% Similarity=0.190 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRS 171 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~ 171 (219)
..+..+..-+.|+..|..+==.-|.+.|+.+|.+.-.-++++.
T Consensus 195 ~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~ 237 (283)
T COG5325 195 EEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSD 237 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhH
Confidence 3566667777778788777667788999999888765555443
No 30
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.68 E-value=8.1 Score=27.90 Aligned_cols=76 Identities=11% Similarity=0.194 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHH----HhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVD----KTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIA 204 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~----ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~ 204 (219)
..++.++++|...|..-.+--+++=....-||.+.+ -|.-|+..-..|+.-|++-.++.| .|.+++++|++
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~-----~~m~~f~lV~~ 110 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLL-----CWMAVFSLVAF 110 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHHH
Confidence 556677777777777644333333222223333222 222233333445444544333333 45556655555
Q ss_pred HHHHH
Q 027759 205 LILII 209 (219)
Q Consensus 205 ~~~~i 209 (219)
+++.+
T Consensus 111 fi~~~ 115 (118)
T KOG3385|consen 111 FILWV 115 (118)
T ss_pred HHhhe
Confidence 44433
No 31
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=83.34 E-value=13 Score=28.83 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHh
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQ 179 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~ 179 (219)
.-...+...+++++.-|.+.|+++-..=++||.+..++..|.+.+..+...
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~e 159 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESE 159 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999888888888877766554
No 32
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=82.77 E-value=0.66 Score=35.06 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=24.3
Q ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 027759 177 RQQGTKMRRKMWIQNMKIKLIVLGIIIALILIIVLSVC 214 (219)
Q Consensus 177 ~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~i~~~~C 214 (219)
++.-.+.||... +|+..+++++||+++++|++.+|
T Consensus 121 KkKEae~kr~K~---Cki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 121 KKKEAELKRSKV---CKIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHheEEEEEEEE
Confidence 333344554443 46777888888888999999998
No 33
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=82.13 E-value=7.7 Score=24.76 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=31.8
Q ss_pred HHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027759 161 LLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 161 ~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~i 209 (219)
.+.+...++-.++.++-+.++|=.|+-.++..|...+..+++-++-|+|
T Consensus 5 ~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~I 53 (61)
T PRK09400 5 KLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFII 53 (61)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666667777777777777788777777666555555444444
No 34
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=81.85 E-value=26 Score=28.44 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Q 027759 194 IKLIVLGIIIALILIIVLSVCHGF 217 (219)
Q Consensus 194 ~~~ii~~vv~~~~~~i~~~~C~gf 217 (219)
...+.+.++++++|+.++.+-|+|
T Consensus 151 ~~gi~aml~Vf~LF~lvmt~g~d~ 174 (230)
T PF03904_consen 151 YKGIGAMLFVFMLFALVMTIGSDF 174 (230)
T ss_pred HHhHHHHHHHHHHHHHHHHhcccc
Confidence 344555555556666655555444
No 35
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=80.87 E-value=16 Score=25.35 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhh
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRG 156 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rg 156 (219)
+.+..-+...++|-+-|..++|+ +.|.
T Consensus 28 ~~Ik~gq~~qe~v~~kld~tlD~-i~re 54 (98)
T PF11166_consen 28 DEIKDGQHDQELVNQKLDRTLDE-INRE 54 (98)
T ss_pred HHHHHhHhhHHHHHHHHHhhHHH-HHHH
Confidence 33444456667777777777777 4444
No 36
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.83 E-value=32 Score=28.20 Aligned_cols=25 Identities=8% Similarity=0.290 Sum_probs=12.0
Q ss_pred HHHHHHHHHhHHHHHHHhHHHHHhh
Q 027759 131 LAKVKAQVSEVKGVMMENIEKVLDR 155 (219)
Q Consensus 131 l~~i~~~l~~vk~im~~Ni~~vl~R 155 (219)
+...|+++-+=+++..++|.+-+.|
T Consensus 139 ~~~~qqqm~~eQDe~Ld~ls~ti~r 163 (235)
T KOG3202|consen 139 IVQLQQQMLQEQDEGLDGLSATVQR 163 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544455555555444443
No 37
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=79.63 E-value=41 Score=30.12 Aligned_cols=41 Identities=15% Similarity=0.134 Sum_probs=19.7
Q ss_pred hHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHH
Q 027759 107 NKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIE 150 (219)
Q Consensus 107 ~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~ 150 (219)
|.+|...+.+..+.. + +..+-+..+.++++.+...+...++
T Consensus 104 N~~~h~gV~~t~~si-~--~an~tv~~l~nqv~~l~~al~~t~~ 144 (418)
T cd07912 104 NDETHDGVVQLTYSL-R--NANHTVAGIDNQTSDTEASLNVTVE 144 (418)
T ss_pred cHHHhhhHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 345555555554443 1 1224455555555555555544443
No 38
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.51 E-value=33 Score=27.54 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHhhhHHHH
Q 027759 155 RGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 155 Rge~L~~l~~ks~~L~~~ 172 (219)
+...++.|.+.-++|..+
T Consensus 130 ~~~~~~~L~~~n~~L~~~ 147 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQ 147 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 39
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=77.90 E-value=19 Score=28.06 Aligned_cols=108 Identities=14% Similarity=0.188 Sum_probs=56.9
Q ss_pred EEEEEEecCCcccchHHHHHHHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHH
Q 027759 63 FTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVK 142 (219)
Q Consensus 63 ~~~~~vtd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk 142 (219)
.+|.|++-+- -......|++.+..++.+............-.+ -|...++-.++-. ..+.. .+-+.++-
T Consensus 64 ~IF~~L~~~l-~~efl~~~~~~L~~~~~~~L~~p~~~d~~~W~L--Al~~a~~~~Iql~-e~~~~-------~~~vk~L~ 132 (174)
T PF04510_consen 64 HIFICLPMPL-YGEFLIPFMENLLPEISKVLLPPEEVDVEDWVL--ALTGAVCMAIQLL-ESSMR-------VDLVKELL 132 (174)
T ss_pred HHHHhCCchh-hhhHHHHHHHHHHHHHHHHcCCchhccHHHHHH--HHHHHHHHHHHHh-ccccH-------HHHHHHHH
Confidence 3455555333 344556678888888877664321111110011 1233333222222 11111 23345566
Q ss_pred HHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 027759 143 GVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQN 191 (219)
Q Consensus 143 ~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~ 191 (219)
.+|.+.+.++++||...+-+.. .|+.=.+-+++.++|=+
T Consensus 133 ~~mv~Sv~elV~~g~E~~~l~r----------gl~~~e~~v~~~~~~y~ 171 (174)
T PF04510_consen 133 PKMVKSVKELVERGMEVGFLRR----------GLRDFESFVSRQMNWYK 171 (174)
T ss_pred HHHHHHHHHHHHcccHHHHHHH----------HHHHHHHHHHHHHHHhh
Confidence 6699999999999987776653 34443456777777644
No 40
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.90 E-value=41 Score=27.82 Aligned_cols=44 Identities=20% Similarity=0.236 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
+|+..++.-+++..+...+--+.--.+..+++.+..+-+.++..
T Consensus 192 ~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~ 235 (264)
T PF06008_consen 192 AKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQ 235 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444443344444444555555555554433
No 41
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=76.39 E-value=35 Score=28.08 Aligned_cols=11 Identities=0% Similarity=0.271 Sum_probs=5.7
Q ss_pred HHHHHHHHHhh
Q 027759 81 FLERVKEDFNK 91 (219)
Q Consensus 81 fL~~i~~~f~~ 91 (219)
+-.+++++...
T Consensus 114 ~~~eLR~~ll~ 124 (251)
T PF09753_consen 114 YTSELRKRLLS 124 (251)
T ss_pred hhHHHHhhhcc
Confidence 44556665443
No 42
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=75.33 E-value=7.2 Score=27.01 Aligned_cols=12 Identities=25% Similarity=0.462 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHh
Q 027759 181 TKMRRKMWIQNM 192 (219)
Q Consensus 181 ~~l~~~~~~~~~ 192 (219)
|+-||+..|++.
T Consensus 6 kK~K~k~~l~~~ 17 (96)
T PF13800_consen 6 KKAKRKSRLRTV 17 (96)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 43
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.19 E-value=38 Score=28.90 Aligned_cols=50 Identities=16% Similarity=0.356 Sum_probs=28.7
Q ss_pred HhHHHHHhchhhcCCchhhhHHHHHHHHHHh---HHHHHHHhHHHHHhhhHHHHHHHHH
Q 027759 110 FGSKLKEHMQYCVDHPEEISKLAKVKAQVSE---VKGVMMENIEKVLDRGEKIELLVDK 165 (219)
Q Consensus 110 f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~---vk~im~~Ni~~vl~Rge~L~~l~~k 165 (219)
|+...+.+...+| +..|.+.++++.+-| ++++|. +++++..++||.+.+-
T Consensus 216 ~E~En~~l~~~~n---~~~devrqie~~lvEI~~Lq~ifs---ehvl~Q~~~Id~I~d~ 268 (316)
T KOG3894|consen 216 LETENQRLLNELN---ELLDEVRQIEKRLVEISALQDIFS---EHVLQQDQNIDLIHDL 268 (316)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 3444444444442 223666666655544 444444 5678888888888873
No 44
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=73.23 E-value=26 Score=28.39 Aligned_cols=19 Identities=5% Similarity=0.106 Sum_probs=12.1
Q ss_pred HHhhhHHHHHHHHHHhHHH
Q 027759 164 DKTENLRSQAQDFRQQGTK 182 (219)
Q Consensus 164 ~ks~~L~~~s~~f~~~a~~ 182 (219)
+.++.|...|....+.+++
T Consensus 194 ~N~~~L~~~Serve~y~ks 212 (244)
T KOG2678|consen 194 VNSQGLMDVSERVEKYDKS 212 (244)
T ss_pred HHHHHHHhhhHHHHHHHHh
Confidence 4566677777777666544
No 45
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.35 E-value=50 Score=26.64 Aligned_cols=47 Identities=21% Similarity=0.403 Sum_probs=19.6
Q ss_pred HHHHhhhHHHHHHHHHHhHHH---HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027759 162 LVDKTENLRSQAQDFRQQGTK---MRRKMWIQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 162 l~~ks~~L~~~s~~f~~~a~~---l~~~~~~~~~k~~~ii~~vv~~~~~~ 208 (219)
|+.-=+.|.+.....-+..+- +.|++.-.++-.++|+++.+++++++
T Consensus 165 L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~i 214 (220)
T KOG1666|consen 165 LERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLI 214 (220)
T ss_pred HHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444443444443333 33444444444555554444444333
No 46
>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.48 E-value=68 Score=27.87 Aligned_cols=84 Identities=13% Similarity=0.269 Sum_probs=58.5
Q ss_pred EEEEEeCCeEEEee-c-CCCCCHHHHHHH-HhccCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCcccchHHHHHHH
Q 027759 8 YSFVARGTVILAEY-T-EFTGNFTSIASQ-CLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLER 84 (219)
Q Consensus 8 Ya~Iar~~~iLae~-~-~~~~~~~~ia~~-il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~af~fL~~ 84 (219)
|..=.||++++.-. . +-.++..++.+- ++....-.++ ..+.++-+|||...+++-.++||..+......|.||.+
T Consensus 6 fi~n~rGevlink~fr~dlkrs~~diFRv~vi~n~d~r~P--V~~igsttf~~~r~~nl~lvaitksN~Nva~v~eFl~k 83 (446)
T KOG0938|consen 6 FIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINNLDVRSP--VLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEFLYK 83 (446)
T ss_pred EEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhccccCCC--eeEecceeEEEEeeccEEEEEEecCCCchhhHHHHHHH
Confidence 33446888888753 2 334565554432 3333222222 46789999999999999999999999999999999999
Q ss_pred HHHHHhhhc
Q 027759 85 VKEDFNKRY 93 (219)
Q Consensus 85 i~~~f~~~~ 93 (219)
+-+.+..-+
T Consensus 84 l~avm~aYf 92 (446)
T KOG0938|consen 84 LDAVMNAYF 92 (446)
T ss_pred HHHHHHHHh
Confidence 987776544
No 47
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.15 E-value=66 Score=27.18 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHH---HHHHHHhhhHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKI---ELLVDKTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L---~~l~~ks~~L~~~ 172 (219)
..+..++..+.|+=+|+.+=-..+=+.||-+ |+.++.++-.-+.
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~g 273 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEG 273 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHH
Confidence 5566778888888888877666677777644 4444444443333
No 48
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=69.88 E-value=45 Score=25.17 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=35.0
Q ss_pred cCCcccchHHHHHHHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcCCchhhhHHHHH-HHHHHhHHHHHHHh
Q 027759 70 VESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKV-KAQVSEVKGVMMEN 148 (219)
Q Consensus 70 d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i-~~~l~~vk~im~~N 148 (219)
+++.|-=+.....+.+.++..+... ..-..|+..|.....++.++ ..+|-+++ ..-+...++-|.+.
T Consensus 21 ~~DDPILil~TiNe~ll~~~~~aq~----------~~l~~fk~elE~~~~~w~~d--ak~kAEkiL~aal~~ske~m~~~ 88 (144)
T PF11657_consen 21 SRDDPILILQTINERLLEDSAKAQQ----------EQLDQFKEELEEIASRWGED--AKEKAEKILNAALAASKEAMNKI 88 (144)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555655555555555555443321 11156777777776665322 22444333 34445555555555
Q ss_pred HH
Q 027759 149 IE 150 (219)
Q Consensus 149 i~ 150 (219)
+.
T Consensus 89 l~ 90 (144)
T PF11657_consen 89 LQ 90 (144)
T ss_pred HH
Confidence 53
No 49
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=68.03 E-value=9.2 Score=30.00 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=21.6
Q ss_pred HHHHHHhHHHHHHH--hHHHHHhhhHHHHHHHHHhhhHH
Q 027759 134 VKAQVSEVKGVMME--NIEKVLDRGEKIELLVDKTENLR 170 (219)
Q Consensus 134 i~~~l~~vk~im~~--Ni~~vl~Rge~L~~l~~ks~~L~ 170 (219)
.|-+++.++.+|.+ |-+.+++|.-.=.+|.++-++|.
T Consensus 21 aKiq~~~~k~~m~d~snf~~ife~~~sdse~Dd~vd~lE 59 (214)
T PF06837_consen 21 AKIQIESIKPIMQDFSNFDEIFERPLSDSELDDKVDKLE 59 (214)
T ss_pred HHHHHHhhhHHHHhccchHHHHcccCcchhHHHHHHHHh
Confidence 34566777778776 77888876433333344444443
No 50
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.65 E-value=26 Score=27.94 Aligned_cols=18 Identities=28% Similarity=0.593 Sum_probs=11.5
Q ss_pred HHHHHhHHHHH-HHHHHHH
Q 027759 174 QDFRQQGTKMR-RKMWIQN 191 (219)
Q Consensus 174 ~~f~~~a~~l~-~~~~~~~ 191 (219)
..|+..|...+ |-|||.-
T Consensus 170 ~~FR~tSES~NsRvm~Wsv 188 (215)
T KOG1690|consen 170 ETFRDTSESANSRVMWWSV 188 (215)
T ss_pred HHHHhhhhhhcceeeehhH
Confidence 45777776666 5578743
No 51
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=67.41 E-value=3.3 Score=28.65 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=15.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhc
Q 027759 191 NMKIKLIVLGIIIALILIIVLSVC 214 (219)
Q Consensus 191 ~~k~~~ii~~vv~~~~~~i~~~~C 214 (219)
.||.++..++.+++++++|.+..|
T Consensus 40 ayWpyLA~GGG~iLilIii~Lv~C 63 (98)
T PF07204_consen 40 AYWPYLAAGGGLILILIIIALVCC 63 (98)
T ss_pred hhhHHhhccchhhhHHHHHHHHHH
Confidence 356777777766666666666666
No 52
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=66.98 E-value=23 Score=22.57 Aligned_cols=43 Identities=14% Similarity=0.057 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027759 167 ENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 167 ~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~i 209 (219)
.+.-.++.++-+.++|=.|+-.++..+...+..+++-++-|+|
T Consensus 7 ~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf~I 49 (61)
T TIGR00327 7 VEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGYII 49 (61)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777888788888888887766655555544444
No 53
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=66.07 E-value=14 Score=25.46 Aligned_cols=20 Identities=5% Similarity=0.096 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhHHHHHHHHH
Q 027759 182 KMRRKMWIQNMKIKLIVLGI 201 (219)
Q Consensus 182 ~l~~~~~~~~~k~~~ii~~v 201 (219)
-+||..|+..++.+++..++
T Consensus 4 i~kK~K~k~~l~~~~isi~~ 23 (96)
T PF13800_consen 4 ILKKAKRKSRLRTVVISIIS 23 (96)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 46777788777877665444
No 54
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=65.81 E-value=30 Score=21.51 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
+.+..+.+.+.+++++..+==+.+-+.|+-|+.+.+..+.-...
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~ 47 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANEN 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHH
Confidence 67888999999999998877778888899999988776665543
No 55
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=65.39 E-value=62 Score=25.08 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVL 153 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl 153 (219)
....+++.+++.+++-+.+-|+++-
T Consensus 80 ~~~e~L~~eie~l~~~L~~ei~~l~ 104 (177)
T PF07798_consen 80 SENEKLQREIEKLRQELREEINKLR 104 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888888887643
No 56
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.52 E-value=74 Score=25.65 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=29.8
Q ss_pred hHHHHHhhhHH-HHHHHHHhhhHHHHHHHHHHhH----------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027759 148 NIEKVLDRGEK-IELLVDKTENLRSQAQDFRQQG----------TKMRRKMWIQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 148 Ni~~vl~Rge~-L~~l~~ks~~L~~~s~~f~~~a----------~~l~~~~~~~~~k~~~ii~~vv~~~~~~i 209 (219)
-+|.+|++|-. +|.|+++=..|+..-+.+..-+ +-+.|+.. .=|+++++|+++|+++++.
T Consensus 137 ~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~--~Dk~iF~~G~i~~~v~~yl 207 (213)
T KOG3251|consen 137 MLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVR--EDKIIFYGGVILTLVIMYL 207 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHH
Confidence 34556666643 4666666666665444444332 22233221 2345556666655554443
No 57
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=64.09 E-value=1.1e+02 Score=29.98 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q 027759 197 IVLGIIIALILIIVLSVCH 215 (219)
Q Consensus 197 ii~~vv~~~~~~i~~~~C~ 215 (219)
++.+|+++.++..+.+.||
T Consensus 423 ~llLIv~~~~lGLl~G~~G 441 (806)
T PF05478_consen 423 VLLLIVLCLLLGLLCGCCG 441 (806)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3444555566677778887
No 58
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=63.78 E-value=58 Score=26.47 Aligned_cols=28 Identities=4% Similarity=0.026 Sum_probs=15.6
Q ss_pred HHHHHHHHhHHHHHHHHHHH-HhHHHHHH
Q 027759 171 SQAQDFRQQGTKMRRKMWIQ-NMKIKLIV 198 (219)
Q Consensus 171 ~~s~~f~~~a~~l~~~~~~~-~~k~~~ii 198 (219)
.++...+-.|.++++...-+ .+|.++.+
T Consensus 194 ~N~~~L~~~Serve~y~ksk~s~wf~~~m 222 (244)
T KOG2678|consen 194 VNSQGLMDVSERVEKYDKSKLSYWFYITM 222 (244)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhHHHHHHH
Confidence 44555666667777766544 44444333
No 59
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.76 E-value=20 Score=30.48 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=16.4
Q ss_pred HHHHHHHh-HHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHH
Q 027759 172 QAQDFRQQ-GTKMRRKMWI-QNMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 172 ~s~~f~~~-a~~l~~~~~~-~~~k~~~ii~~vv~~~~~~i~ 210 (219)
+|..|-.+ +-.+++.... ++-+=|-++++++++++++|+
T Consensus 245 ~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~ 285 (297)
T KOG0810|consen 245 NAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVL 285 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHH
Confidence 34444443 2334433322 333444455555444444333
No 60
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=63.39 E-value=35 Score=21.55 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQD 175 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~ 175 (219)
.+.+.....-++++.++-.+.++.+-..++.|....++..++...-..
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~ 54 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPK 54 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 377888899999999999999999999999999888888777766443
No 61
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=62.72 E-value=11 Score=36.98 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 027759 182 KMRRKMWIQNMKIKLIVLGIIIALILIIVL 211 (219)
Q Consensus 182 ~l~~~~~~~~~k~~~ii~~vv~~~~~~i~~ 211 (219)
|--+...|+.|++++|+.++++++++..++
T Consensus 1060 K~~~~i~W~~yr~~il~~l~ililll~l~~ 1089 (1105)
T KOG1326|consen 1060 KSFKFILWHRYRWYILLLLLILILLLLLAL 1089 (1105)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333678999999999887766665554443
No 62
>smart00096 UTG Uteroglobin.
Probab=62.01 E-value=22 Score=23.31 Aligned_cols=40 Identities=18% Similarity=0.231 Sum_probs=30.1
Q ss_pred HhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhh
Q 027759 116 EHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (219)
Q Consensus 116 ~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~R 155 (219)
..++.|+.+|+..+...++++=+|....--+.||-+++++
T Consensus 23 ~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 23 ASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4455777788877888888988888777777777777654
No 63
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.79 E-value=40 Score=28.52 Aligned_cols=35 Identities=9% Similarity=0.285 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLV 163 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~ 163 (219)
..+.++-+-+.|+..|+.+==..|++.|--+|.+.
T Consensus 218 ~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRID 252 (305)
T KOG0809|consen 218 KEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRID 252 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhee
Confidence 34677778888888888887788889987776654
No 64
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=60.40 E-value=21 Score=20.04 Aligned_cols=18 Identities=22% Similarity=0.687 Sum_probs=10.7
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 027759 186 KMWIQNMKIKLIVLGIII 203 (219)
Q Consensus 186 ~~~~~~~k~~~ii~~vv~ 203 (219)
+.|-||...-+.+.++++
T Consensus 17 qkwirnit~cfal~vv~l 34 (40)
T PF13124_consen 17 QKWIRNITFCFALLVVVL 34 (40)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468888775554444433
No 65
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=60.28 E-value=21 Score=22.97 Aligned_cols=43 Identities=28% Similarity=0.368 Sum_probs=29.3
Q ss_pred HHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhh
Q 027759 113 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (219)
Q Consensus 113 ~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~R 155 (219)
..+..++.|+.+|+......++++-+++...-=+.|+.++|++
T Consensus 18 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~ 60 (67)
T PF01099_consen 18 EYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLEK 60 (67)
T ss_dssp HHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455666776777777888888988888888888888777654
No 66
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=60.22 E-value=33 Score=21.66 Aligned_cols=9 Identities=22% Similarity=0.486 Sum_probs=4.9
Q ss_pred HHHHHHHHh
Q 027759 171 SQAQDFRQQ 179 (219)
Q Consensus 171 ~~s~~f~~~ 179 (219)
+.|..|-++
T Consensus 9 ETA~~FL~R 17 (60)
T PF06072_consen 9 ETATEFLRR 17 (60)
T ss_pred ccHHHHHHH
Confidence 456666553
No 67
>PHA02557 22 prohead core protein; Provisional
Probab=59.96 E-value=64 Score=26.93 Aligned_cols=94 Identities=19% Similarity=0.257 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCccccccccchHHHhHHHHHhc-hhhcCCch-hhhHHHHHHHHHHhHHHHHHHhHHHHHhh
Q 027759 78 PIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHM-QYCVDHPE-EISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (219)
Q Consensus 78 af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~-~~~~~~~~-~~dkl~~i~~~l~~vk~im~~Ni~~vl~R 155 (219)
+-.||+.+-.+|...-. ...+......+..+|-.-|++++ .++..-|+ ..|-+..+..+|++...-...-+++..+.
T Consensus 89 vd~~l~~~~~eW~~ENk-~Av~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l 167 (271)
T PHA02557 89 ADKYLDHLAKEWLAENK-LAVDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVAL 167 (271)
T ss_pred HHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55699999999976432 11223333344456666777776 44434454 45788899999999888888888777777
Q ss_pred hHHHHH------HHHHhhhHHHH
Q 027759 156 GEKIEL------LVDKTENLRSQ 172 (219)
Q Consensus 156 ge~L~~------l~~ks~~L~~~ 172 (219)
.+.++. +.+-|.+|.+.
T Consensus 168 ~e~i~~~~r~~i~~e~t~gLtds 190 (271)
T PHA02557 168 EEYINEVKREVILSEVTKDLTES 190 (271)
T ss_pred HHHHHHHHHHHHHHHHHcchhHH
Confidence 776654 34455666543
No 68
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.06 E-value=42 Score=26.75 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=33.3
Q ss_pred HHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 027759 136 AQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKM 187 (219)
Q Consensus 136 ~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (219)
+.+..+|.-|.+==+-++++=|++-+--++-|=|-+.+...+.++...|++-
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~ 176 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQG 176 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHH
Confidence 5566677777665455555555555544555556688888888887777554
No 69
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=58.71 E-value=22 Score=24.63 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHhH-HHHHHHHHHHHhHHHHHHHHHHHHH
Q 027759 167 ENLRSQAQDFRQQG-TKMRRKMWIQNMKIKLIVLGIIIAL 205 (219)
Q Consensus 167 ~~L~~~s~~f~~~a-~~l~~~~~~~~~k~~~ii~~vv~~~ 205 (219)
+.|+..+..+.++. .+.++..-|-+.+..+++++++.++
T Consensus 78 ~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 117 (124)
T PF00482_consen 78 EVLEQLADQLRERERLRIKRAAELIEPLILIIVGALVLFF 117 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444431 2333333344444444444443333
No 70
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.76 E-value=47 Score=21.37 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=20.5
Q ss_pred HHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 027759 159 IELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLI 197 (219)
Q Consensus 159 L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~i 197 (219)
++.+.+-+.+...+|..|.++.++=-|+-+-+-.+-..+
T Consensus 4 ~~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~ai 42 (67)
T KOG3498|consen 4 VDQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAI 42 (67)
T ss_pred HHHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 344444445555555566665555556665554444433
No 71
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=56.73 E-value=30 Score=22.19 Aligned_cols=42 Identities=29% Similarity=0.336 Sum_probs=30.3
Q ss_pred HHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHh
Q 027759 113 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLD 154 (219)
Q Consensus 113 ~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~ 154 (219)
.+...++.||.+|+..+...++|+=+++....=+.|+-++|+
T Consensus 18 ~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 18 EYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 455666778778887788888888888876666666665554
No 72
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=55.18 E-value=11 Score=19.18 Aligned_cols=9 Identities=44% Similarity=0.633 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 027759 203 IALILIIVL 211 (219)
Q Consensus 203 ~~~~~~i~~ 211 (219)
.+++++|+.
T Consensus 12 LFILLiIvG 20 (24)
T PF09680_consen 12 LFILLIIVG 20 (24)
T ss_pred HHHHHHHhc
Confidence 334444443
No 73
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=54.88 E-value=62 Score=24.46 Aligned_cols=30 Identities=13% Similarity=0.467 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEK 158 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~ 158 (219)
.++.....+++.-+.-..+-+.+.|++|+.
T Consensus 51 ~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 51 KEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred HHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 455556666666544444455555555543
No 74
>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.10 E-value=1e+02 Score=24.07 Aligned_cols=78 Identities=19% Similarity=0.166 Sum_probs=48.9
Q ss_pred HhccCCCCC---CeeEEEECCeEEEEEe-eCCEEEEEEecCCcccchHHHHHHHHHHHHhhhcCCCCccccccccc----
Q 027759 35 CLQKLPATN---NKFTYNCDGHTFNYLV-ENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSL---- 106 (219)
Q Consensus 35 il~ki~~~~---~k~~~~~~~~~~~~l~-~~~~~~~~vtd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~---- 106 (219)
+..++.|.+ .....+.+.+..|+.- -.|+-|++++++.. ..|-.+|+.+...|..-...+ .-|++
T Consensus 110 I~~qlsp~~ksSGie~LetdtF~l~~~QTlTG~KFVvis~~~~--~~aD~lLrKiYelYsDyvlKN-----PfYSlEMPI 182 (199)
T KOG3369|consen 110 ISTQLSPEPKSSGIEVLETDTFTLHIFQTLTGTKFVVIAEPGT--QGADSLLRKIYELYSDYVLKN-----PFYSLEMPI 182 (199)
T ss_pred eeeccCCCCCCCceEEEEeccEEEEEEEccCCcEEEEEecCCc--hhHHHHHHHHHHHHHHHhhcC-----CccCcccce
Confidence 344555442 3445667888877654 58999999999877 467778888887775432211 11222
Q ss_pred -hHHHhHHHHHhch
Q 027759 107 -NKEFGSKLKEHMQ 119 (219)
Q Consensus 107 -~~~f~~~l~~~~~ 119 (219)
+..|++.|+.+++
T Consensus 183 Rc~lFDe~lk~~le 196 (199)
T KOG3369|consen 183 RCELFDEKLKFLLE 196 (199)
T ss_pred eHHHhhHHHHHHHh
Confidence 2457777776653
No 75
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=53.61 E-value=21 Score=20.41 Aligned_cols=14 Identities=21% Similarity=0.733 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 027759 196 LIVLGIIIALILII 209 (219)
Q Consensus 196 ~ii~~vv~~~~~~i 209 (219)
.|+++|++.++.++
T Consensus 7 aIIv~V~vg~~iii 20 (38)
T PF02439_consen 7 AIIVAVVVGMAIII 20 (38)
T ss_pred hHHHHHHHHHHHHH
Confidence 34444444443333
No 76
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=52.46 E-value=1.1e+02 Score=23.68 Aligned_cols=11 Identities=18% Similarity=0.501 Sum_probs=7.0
Q ss_pred HHHHHHHHHHh
Q 027759 80 AFLERVKEDFN 90 (219)
Q Consensus 80 ~fL~~i~~~f~ 90 (219)
.||+++++...
T Consensus 5 efL~~L~~~L~ 15 (181)
T PF08006_consen 5 EFLNELEKYLK 15 (181)
T ss_pred HHHHHHHHHHH
Confidence 46777766654
No 77
>PRK11546 zraP zinc resistance protein; Provisional
Probab=51.33 E-value=68 Score=24.19 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=14.9
Q ss_pred CchhhhHHHHHHHHHHhHHHHHH
Q 027759 124 HPEEISKLAKVKAQVSEVKGVMM 146 (219)
Q Consensus 124 ~~~~~dkl~~i~~~l~~vk~im~ 146 (219)
.|+. .++.++.+|+.+++.-|.
T Consensus 85 ~pD~-~kI~aL~kEI~~Lr~kL~ 106 (143)
T PRK11546 85 PPDS-SKINAVAKEMENLRQSLD 106 (143)
T ss_pred CCCH-HHHHHHHHHHHHHHHHHH
Confidence 3443 678888888888776543
No 78
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=50.66 E-value=78 Score=25.53 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=9.3
Q ss_pred hHHHHHHHHHhhhHHHHHH
Q 027759 156 GEKIELLVDKTENLRSQAQ 174 (219)
Q Consensus 156 ge~L~~l~~ks~~L~~~s~ 174 (219)
|+.|+.|+.+-+++.-...
T Consensus 14 ~~~L~rle~qi~q~~~~~~ 32 (251)
T COG5415 14 TADLSRLESQIHQLDVALK 32 (251)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4455555555555544433
No 79
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=50.42 E-value=1e+02 Score=27.43 Aligned_cols=87 Identities=6% Similarity=0.084 Sum_probs=55.9
Q ss_pred EEEEEeCCeEEEe-ecCCC--CCHHHHHHHHhccCCCC-CCeeEEEECCeEEEEEeeCCEEEEEEecCCcccchHHHHHH
Q 027759 8 YSFVARGTVILAE-YTEFT--GNFTSIASQCLQKLPAT-NNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLE 83 (219)
Q Consensus 8 Ya~Iar~~~iLae-~~~~~--~~~~~ia~~il~ki~~~-~~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~af~fL~ 83 (219)
+.....-++++.. |-+++ ..+-.+.+.++.-.... +.-.+++.+++.|.|+..+++.++||+..+.+......-|+
T Consensus 14 ~fIlS~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~l~~qL~ 93 (415)
T PF03164_consen 14 FFILSSAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQLRKQLD 93 (415)
T ss_pred EEEECCCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHHHHHHHH
Confidence 3344444555543 32211 12334445555443322 34457788999999999999999999999988777777777
Q ss_pred HHHHHHhhhcC
Q 027759 84 RVKEDFNKRYG 94 (219)
Q Consensus 84 ~i~~~f~~~~~ 94 (219)
-+........+
T Consensus 94 ~ly~qils~lt 104 (415)
T PF03164_consen 94 YLYSQILSILT 104 (415)
T ss_pred HHHHHHHHhcc
Confidence 77776655543
No 80
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=49.45 E-value=1.9e+02 Score=26.48 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHHhHHHHHhhhHHH
Q 027759 134 VKAQVSEVKGVMMENIEKVLDRGEKI 159 (219)
Q Consensus 134 i~~~l~~vk~im~~Ni~~vl~Rge~L 159 (219)
+..++.++-....+|++.+...+.-+
T Consensus 160 ~~~~l~~~l~~vq~~~~~a~~~l~~~ 185 (526)
T KOG4433|consen 160 ARPELLQALRRVQGNAETAVGQLSGL 185 (526)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 34444444445555555554444333
No 81
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=48.83 E-value=1.9e+02 Score=26.58 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=8.2
Q ss_pred HHHHhHHHHHHHhHHHHHh
Q 027759 136 AQVSEVKGVMMENIEKVLD 154 (219)
Q Consensus 136 ~~l~~vk~im~~Ni~~vl~ 154 (219)
.+.+++.....+.+...++
T Consensus 68 ~~~~~~~~~w~~~~~~~~~ 86 (569)
T PRK10600 68 AQLQALQDYWRNELKPALQ 86 (569)
T ss_pred HHHHHHHHHHHHhhhHHhh
Confidence 3344444444444444443
No 82
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=48.61 E-value=30 Score=22.91 Aligned_cols=18 Identities=39% Similarity=1.095 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 027759 197 IVLGIIIALILIIVLSVC 214 (219)
Q Consensus 197 ii~~vv~~~~~~i~~~~C 214 (219)
+++++++++++++++.+|
T Consensus 6 ~~~g~~~ll~~v~~~~~~ 23 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIVC 23 (75)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhheeEEEE
Confidence 334444444444445555
No 83
>PHA02650 hypothetical protein; Provisional
Probab=48.49 E-value=15 Score=24.58 Aligned_cols=18 Identities=17% Similarity=0.645 Sum_probs=7.0
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 027759 187 MWIQNMKIKLIVLGIIIA 204 (219)
Q Consensus 187 ~~~~~~k~~~ii~~vv~~ 204 (219)
.||..+.++++++.++++
T Consensus 45 ~~~~~~~~ii~i~~v~i~ 62 (81)
T PHA02650 45 SWFNGQNFIFLIFSLIIV 62 (81)
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 344333344444333333
No 84
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=48.38 E-value=55 Score=20.31 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHhhhHHHHHH
Q 027759 155 RGEKIELLVDKTENLRSQAQ 174 (219)
Q Consensus 155 Rge~L~~l~~ks~~L~~~s~ 174 (219)
=|.|||+|+..-.+|..+|.
T Consensus 33 M~~RIDdLE~si~dl~~qag 52 (54)
T PF06825_consen 33 MSSRIDDLEKSIADLMTQAG 52 (54)
T ss_dssp HHHHHHCCHHHH--------
T ss_pred HHhhHHHHHHHHHHHHHhcC
Confidence 37777777776666665543
No 85
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=48.23 E-value=19 Score=30.27 Aligned_cols=17 Identities=24% Similarity=0.469 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027759 195 KLIVLGIIIALILIIVL 211 (219)
Q Consensus 195 ~~ii~~vv~~~~~~i~~ 211 (219)
.++++++|++++++||+
T Consensus 266 lvllil~vvliiLYiWl 282 (295)
T TIGR01478 266 LVLIILTVVLIILYIWL 282 (295)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455566667778886
No 86
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=48.12 E-value=76 Score=20.73 Aligned_cols=29 Identities=17% Similarity=0.472 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 027759 157 EKIELLVDKTENLRSQAQDFRQQGTKMRRKM 187 (219)
Q Consensus 157 e~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (219)
+|||++++|-|.- ++.-|++-.+++-|..
T Consensus 22 kRLdeieekvef~--~~Ev~Qr~GkkiGRDI 50 (75)
T COG4064 22 KRLDEIEEKVEFV--NGEVYQRIGKKIGRDI 50 (75)
T ss_pred HHHHHHHHHHHhh--HHHHHHHHHHHhcchH
Confidence 4566666655543 3455666667776654
No 87
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=47.59 E-value=4.9 Score=37.18 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=0.4
Q ss_pred HHhHHHHHhchhh
Q 027759 109 EFGSKLKEHMQYC 121 (219)
Q Consensus 109 ~f~~~l~~~~~~~ 121 (219)
+|+..+.++.+.+
T Consensus 481 Dfnkel~e~~~n~ 493 (610)
T PF01601_consen 481 DFNKELDEIFKNL 493 (610)
T ss_dssp ------------S
T ss_pred ChHHHHHHHHHhc
Confidence 4555555555443
No 88
>PHA02844 putative transmembrane protein; Provisional
Probab=47.49 E-value=17 Score=23.99 Aligned_cols=13 Identities=15% Similarity=0.245 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 027759 194 IKLIVLGIIIALI 206 (219)
Q Consensus 194 ~~~ii~~vv~~~~ 206 (219)
++++++.++++++
T Consensus 51 ~ii~i~~v~~~~~ 63 (75)
T PHA02844 51 WILTIIFVVFATF 63 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 89
>COG4327 Predicted membrane protein [Function unknown]
Probab=46.61 E-value=40 Score=23.42 Aligned_cols=31 Identities=16% Similarity=0.436 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 027759 180 GTKMRRKMWIQNMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 180 a~~l~~~~~~~~~k~~~ii~~vv~~~~~~i~ 210 (219)
+..-++..|..|..++.++.+|=.++-|+.+
T Consensus 6 ~~~~a~aywranttli~~lL~vwflVSfvvi 36 (101)
T COG4327 6 AEHPARAYWRANTTLIAALLGVWFLVSFVVI 36 (101)
T ss_pred cccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888777665555555443
No 90
>KOG4782 consensus Predicted membrane protein [Function unknown]
Probab=46.52 E-value=62 Score=22.45 Aligned_cols=39 Identities=23% Similarity=0.398 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHhHHHHHHH----HHHHHhHHHHHHHHHHHHH
Q 027759 167 ENLRSQAQDFRQQGTKMRRK----MWIQNMKIKLIVLGIIIAL 205 (219)
Q Consensus 167 ~~L~~~s~~f~~~a~~l~~~----~~~~~~k~~~ii~~vv~~~ 205 (219)
|+|.-.-..|.+++.+.++. .+-+|||-.+-.+++..++
T Consensus 28 EdL~peQ~h~akQaE~an~ekV~~~~aknykN~is~a~i~alV 70 (108)
T KOG4782|consen 28 EDLPPEQKHFAKQAEKANQEKVKEIFAKNYKNHISFAGIGALV 70 (108)
T ss_pred hhCChHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 44554445566655444422 3456677655554443333
No 91
>PTZ00370 STEVOR; Provisional
Probab=46.39 E-value=21 Score=30.05 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027759 196 LIVLGIIIALILIIVL 211 (219)
Q Consensus 196 ~ii~~vv~~~~~~i~~ 211 (219)
++++++|++++++||+
T Consensus 263 vllil~vvliilYiwl 278 (296)
T PTZ00370 263 VLLILAVVLIILYIWL 278 (296)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566667777886
No 92
>PHA03011 hypothetical protein; Provisional
Probab=46.17 E-value=1e+02 Score=21.70 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=38.9
Q ss_pred HhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhH
Q 027759 110 FGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169 (219)
Q Consensus 110 f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L 169 (219)
....+.++.-+|| .-.|...-+..++.+...+..+|.|.+.--...+|.|.+.-.++
T Consensus 62 i~e~ldeL~~qYN---~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN~ 118 (120)
T PHA03011 62 IIEILDELIAQYN---ELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIANL 118 (120)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcc
Confidence 3455666666563 23366777788888888888888888877777777776655444
No 93
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.13 E-value=1.6e+02 Score=23.91 Aligned_cols=58 Identities=9% Similarity=0.066 Sum_probs=37.5
Q ss_pred HHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHH-----HHHHHHHHHhHHHHHHHHH
Q 027759 144 VMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTK-----MRRKMWIQNMKIKLIVLGI 201 (219)
Q Consensus 144 im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~-----l~~~~~~~~~k~~~ii~~v 201 (219)
.+..+++.+.++-+++..-..++..+++-+..+..+=+. ..|--||.-+-...++++.
T Consensus 150 ~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L~esNf~rVN~WS~vq~~vmi~v~ 212 (236)
T KOG3287|consen 150 QLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNLQESNFDRVNFWSMVQTLVMILVG 212 (236)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcccchhhHHHHHHHHHHHHHh
Confidence 444467777777777777777888887776666554333 3355688877765555443
No 94
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=44.88 E-value=68 Score=19.22 Aligned_cols=44 Identities=20% Similarity=0.416 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
+.+..+...+.+++++..+==..+-+-|+.|+.+.+..+.....
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~ 49 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVN 49 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888899999887655556667778888888666655544
No 95
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=44.71 E-value=72 Score=19.47 Aligned_cols=44 Identities=14% Similarity=0.404 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
+.+..+...+.+++++..+=-..+-+.|+.|+.+.+..++....
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~ 55 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVN 55 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 67888899999999987765566677888888888766665554
No 96
>PRK13664 hypothetical protein; Provisional
Probab=44.71 E-value=45 Score=20.90 Aligned_cols=16 Identities=13% Similarity=0.385 Sum_probs=9.5
Q ss_pred HHHHHhHHHHHHHHHH
Q 027759 187 MWIQNMKIKLIVLGII 202 (219)
Q Consensus 187 ~~~~~~k~~~ii~~vv 202 (219)
.|...|++++++.+.|
T Consensus 2 ~WLadyWWilill~lv 17 (62)
T PRK13664 2 DWLAKYWWILVLVFLV 17 (62)
T ss_pred chHHHHHHHHHHHHHH
Confidence 3677777775554433
No 97
>COG1969 HyaC Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]
Probab=44.23 E-value=21 Score=28.55 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=25.1
Q ss_pred HHHHHHHHHH----HhHHHHHH-------------H-HHHHHHHHHHHHHhcCCC
Q 027759 181 TKMRRKMWIQ----NMKIKLIV-------------L-GIIIALILIIVLSVCHGF 217 (219)
Q Consensus 181 ~~l~~~~~~~----~~k~~~ii-------------~-~vv~~~~~~i~~~~C~gf 217 (219)
..+.++.||+ ..|+++.+ + +......+.|++.+|.||
T Consensus 96 ~~fw~k~w~eg~~~~ik~Ylfl~kkPh~~~~~NPia~~AyFf~~lmiv~MiltGf 150 (227)
T COG1969 96 VPFWRKAWWEGVWYQIKWYLFLGKKPHTKGGHNPIAQVAYFFYFLMIVFMILTGF 150 (227)
T ss_pred hhhhHHHHHHHHHHHhhhheeecCCCccccccCHHHHHHHHHHHHHHHHHHHHhH
Confidence 4577999999 88888874 2 233334456667788776
No 98
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=44.10 E-value=1.3e+02 Score=22.97 Aligned_cols=12 Identities=8% Similarity=0.340 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 027759 180 GTKMRRKMWIQN 191 (219)
Q Consensus 180 a~~l~~~~~~~~ 191 (219)
..+++.-.-|+.
T Consensus 82 gERl~allsWrd 93 (156)
T PF08372_consen 82 GERLQALLSWRD 93 (156)
T ss_pred HHHHHHhhccCC
Confidence 344555555543
No 99
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=44.01 E-value=49 Score=26.12 Aligned_cols=78 Identities=14% Similarity=0.242 Sum_probs=39.2
Q ss_pred cCCcccchHHHHHHHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhH
Q 027759 70 VESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI 149 (219)
Q Consensus 70 d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni 149 (219)
+-+|.+..--..|.|.++...+..... .++-+ ...++....+| .+|+=.+.+-.-+.+..+.-.-+.+.+
T Consensus 108 ~fTfD~~~L~~~L~ec~~~L~~lv~~H----LT~KS-----~~Ri~~vF~~f-~~~efL~~lf~~~~~~~~~L~~i~~~L 177 (186)
T PF05527_consen 108 DFTFDRNYLSKLLKECRDLLHQLVEPH----LTPKS-----HGRIDHVFNFF-SDPEFLDALFSPDEEYRDHLGKICDGL 177 (186)
T ss_dssp TS---HHHHHHHHHHHHHHHHHHHTTT----S-HHH-----HHHHHHHHHHH-T-HHHHHHHTSG--GGHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHh----CChhh-----HHHHHHHHHhh-CChHHHHHHhCcccchHHHHHHHHHHH
Confidence 444555555566666666665554211 11111 23455555566 455433444333445556666677888
Q ss_pred HHHHhhhH
Q 027759 150 EKVLDRGE 157 (219)
Q Consensus 150 ~~vl~Rge 157 (219)
+++|++|.
T Consensus 178 nklld~g~ 185 (186)
T PF05527_consen 178 NKLLDEGS 185 (186)
T ss_dssp HHHHHTT-
T ss_pred HHHHhCCC
Confidence 99999985
No 100
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=43.48 E-value=26 Score=30.83 Aligned_cols=23 Identities=13% Similarity=0.437 Sum_probs=15.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 027759 184 RRKMWIQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 184 ~~~~~~~~~k~~~ii~~vv~~~~ 206 (219)
+++-||.++...+++.+++++++
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~i 316 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVI 316 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHH
Confidence 45679999987777665544333
No 101
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.72 E-value=35 Score=25.03 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027759 194 IKLIVLGIIIALILIIV 210 (219)
Q Consensus 194 ~~~ii~~vv~~~~~~i~ 210 (219)
+..|+++|++.++++|+
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 34444444444444333
No 102
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=42.33 E-value=63 Score=19.72 Aligned_cols=16 Identities=6% Similarity=0.272 Sum_probs=7.7
Q ss_pred HHHhHHHHHHHHHHHH
Q 027759 189 IQNMKIKLIVLGIIIA 204 (219)
Q Consensus 189 ~~~~k~~~ii~~vv~~ 204 (219)
|...++-.++.++|.+
T Consensus 11 y~tLrigGLi~A~vlf 26 (50)
T PF02038_consen 11 YETLRIGGLIFAGVLF 26 (50)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHhhccchHHHHHHH
Confidence 4555555554444333
No 103
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=42.19 E-value=33 Score=23.24 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027759 194 IKLIVLGIIIALILIIVLSV 213 (219)
Q Consensus 194 ~~~ii~~vv~~~~~~i~~~~ 213 (219)
+..|++++|.+++.++++.+
T Consensus 6 i~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555554444444
No 104
>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.90 E-value=2.7e+02 Score=25.24 Aligned_cols=33 Identities=6% Similarity=0.069 Sum_probs=26.1
Q ss_pred eeEEEECCeEEEEEeeCCEEEEEEecCCcccch
Q 027759 45 KFTYNCDGHTFNYLVENGFTYCVVAVESAGRQI 77 (219)
Q Consensus 45 k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~ 77 (219)
...++.+++-|-|-.-|.+-++.||.+.+.--.
T Consensus 46 hT~vEt~~VRYVYqP~d~lY~vLITtk~SNIle 78 (512)
T KOG2635|consen 46 HTFVETDSVRYVYQPLDNLYIVLITTKQSNILE 78 (512)
T ss_pred ccEEecccEEEEEEecccEEEEEEeccccchhh
Confidence 445677888888888899999999999886443
No 105
>PF15339 Afaf: Acrosome formation-associated factor
Probab=41.59 E-value=43 Score=26.03 Aligned_cols=24 Identities=25% Similarity=0.654 Sum_probs=13.9
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHhcC
Q 027759 192 MKIKLIVLG-IIIALILIIVLSVCH 215 (219)
Q Consensus 192 ~k~~~ii~~-vv~~~~~~i~~~~C~ 215 (219)
.|+.+++|+ +.-+++|++++++|.
T Consensus 128 ~KlkLmLGIsLmTl~lfv~Ll~~c~ 152 (200)
T PF15339_consen 128 LKLKLMLGISLMTLFLFVILLAFCS 152 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544 334466777788884
No 106
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.56 E-value=2.8e+02 Score=28.59 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=27.5
Q ss_pred HHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Q 027759 132 AKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMR 184 (219)
Q Consensus 132 ~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~ 184 (219)
..+++..+.+++.+.+-.+....-.+|.+.|.+.+++|-.+|+.-...-+.|.
T Consensus 1664 ~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe 1716 (1758)
T KOG0994|consen 1664 EILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLE 1716 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555666666666666655554333333333
No 107
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=41.32 E-value=17 Score=32.16 Aligned_cols=12 Identities=17% Similarity=0.465 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCC
Q 027759 205 LILIIVLSVCHG 216 (219)
Q Consensus 205 ~~~~i~~~~C~g 216 (219)
|-|+-||++|+|
T Consensus 384 vGfLcWwf~crg 395 (397)
T PF03302_consen 384 VGFLCWWFICRG 395 (397)
T ss_pred HHHHhhheeecc
Confidence 557889999987
No 108
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=40.59 E-value=29 Score=18.04 Aligned_cols=6 Identities=50% Similarity=1.115 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027759 205 LILIIV 210 (219)
Q Consensus 205 ~~~~i~ 210 (219)
++++|+
T Consensus 16 ILLIIi 21 (26)
T TIGR01732 16 ILLVIV 21 (26)
T ss_pred HHHHHh
Confidence 333443
No 109
>PF11675 DUF3271: Protein of unknown function (DUF3271); InterPro: IPR021689 This family of proteins with unknown function appears to be restricted to Plasmodium.
Probab=40.34 E-value=1.1e+02 Score=25.07 Aligned_cols=55 Identities=15% Similarity=0.318 Sum_probs=37.9
Q ss_pred CcceEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCCCCeeEEEECCeEEEEEee
Q 027759 3 QQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVE 60 (219)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~ 60 (219)
|.+|-|+.||.-+..+.........+-.+...++..-+.+ .+..++-++ ||+++.
T Consensus 28 pk~i~y~sv~qpt~~f~~~~k~h~~YLdiIN~il~~eSeN-~Kyayeg~n--YHwvIT 82 (249)
T PF11675_consen 28 PKPIAYISVAQPTATFEHDEKKHTKYLDIINDILRDESEN-IKYAYEGGN--YHWVIT 82 (249)
T ss_pred CCceeEEeccCceEEEeecCccchhHHHHHHHHHhccccc-cceeeeCCc--eEEEEE
Confidence 7889999999877666655555566777888888776655 466666666 454443
No 110
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=40.14 E-value=2.1e+02 Score=23.41 Aligned_cols=20 Identities=5% Similarity=0.134 Sum_probs=9.1
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 027759 189 IQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 189 ~~~~k~~~ii~~vv~~~~~~ 208 (219)
|=...+..++++++++++..
T Consensus 149 ~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 149 SMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 33444555554444444443
No 111
>PHA03054 IMV membrane protein; Provisional
Probab=40.08 E-value=25 Score=23.04 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=7.0
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 027759 188 WIQNMKIKLIVLGIIIAL 205 (219)
Q Consensus 188 ~~~~~k~~~ii~~vv~~~ 205 (219)
||..+.+++++..+++++
T Consensus 45 ~~~~~~~ii~l~~v~~~~ 62 (72)
T PHA03054 45 CWGWYWLIIIFFIVLILL 62 (72)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 433333444443333333
No 112
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=39.99 E-value=1.4e+02 Score=21.59 Aligned_cols=14 Identities=7% Similarity=-0.019 Sum_probs=9.4
Q ss_pred HHHHHHHhHHHHHH
Q 027759 185 RKMWIQNMKIKLIV 198 (219)
Q Consensus 185 ~~~~~~~~k~~~ii 198 (219)
++.+|++|.++.+.
T Consensus 65 ~~~~i~kyg~~GL~ 78 (121)
T PF06695_consen 65 KSKKIEKYGFWGLA 78 (121)
T ss_pred HHHHHHHHhHHHHH
Confidence 66778888755443
No 113
>COG5547 Small integral membrane protein [Function unknown]
Probab=39.88 E-value=43 Score=21.06 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=9.9
Q ss_pred HHHHhHHHHHHHHHH
Q 027759 188 WIQNMKIKLIVLGII 202 (219)
Q Consensus 188 ~~~~~k~~~ii~~vv 202 (219)
|.+.+|+.++-+++-
T Consensus 3 flk~fkypIIgglvg 17 (62)
T COG5547 3 FLKKFKYPIIGGLVG 17 (62)
T ss_pred HHHHhccchHHHHHH
Confidence 677788777655443
No 114
>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.80 E-value=1.1e+02 Score=26.88 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=34.7
Q ss_pred CCeEEEEEeeCCEEEEEEecCCcccchHHHHHHHHHHHHhhhcC
Q 027759 51 DGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYG 94 (219)
Q Consensus 51 ~~~~~~~l~~~~~~~~~vtd~~~~~~~af~fL~~i~~~f~~~~~ 94 (219)
..|.++-...+++.+++++..+.|.=.++.||.+|.+-|.+-++
T Consensus 53 p~hylfsv~~~~i~~~~~st~e~pPL~~iefL~rv~dv~~eyFg 96 (418)
T KOG2740|consen 53 PHHYLFSVYRDLIFFCAVSTVETPPLMVIEFLHRVVDVLLEYFG 96 (418)
T ss_pred CceeeeeeeccCcEEEEEEeccCCChhHHHHHHHHHHHHHHHhc
Confidence 34444445577888888888888988999999999999988775
No 115
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=38.69 E-value=43 Score=22.07 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=4.2
Q ss_pred HHHhHHHHH
Q 027759 137 QVSEVKGVM 145 (219)
Q Consensus 137 ~l~~vk~im 145 (219)
=+|.|+.+|
T Consensus 23 Fi~vVksVl 31 (72)
T PF12575_consen 23 FINVVKSVL 31 (72)
T ss_pred HHHHHHHHH
Confidence 344455444
No 116
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.55 E-value=1.3e+02 Score=24.74 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Q 027759 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRR 185 (219)
Q Consensus 130 kl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~ 185 (219)
.+..+.+.+.-++++-..==+++=+.|.-||++..--+.+...=..=+++..++.+
T Consensus 153 ~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 153 GLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444422211555555666665554444444332222333344444
No 117
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=38.43 E-value=1.9e+02 Score=23.87 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHH
Q 027759 131 LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQ 178 (219)
Q Consensus 131 l~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~ 178 (219)
+..+..+++..+.-...+..+.-......+....++.+|.........
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~ 101 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQD 101 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443333333333333333344444444444333333
No 118
>PHA02819 hypothetical protein; Provisional
Probab=38.15 E-value=28 Score=22.76 Aligned_cols=10 Identities=10% Similarity=0.321 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 027759 194 IKLIVLGIII 203 (219)
Q Consensus 194 ~~~ii~~vv~ 203 (219)
+++++..+++
T Consensus 49 ~ii~l~~~~~ 58 (71)
T PHA02819 49 LIIGLVTIVF 58 (71)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 119
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=38.11 E-value=2.2e+02 Score=24.89 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027759 194 IKLIVLGIIIALILIIVLS 212 (219)
Q Consensus 194 ~~~ii~~vv~~~~~~i~~~ 212 (219)
+.++++++|.++++.+.++
T Consensus 372 ~il~ig~~v~~i~~~i~lP 390 (399)
T PRK10573 372 LMIITGGIVGTLVVAMYLP 390 (399)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455544454444444
No 120
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=38.02 E-value=46 Score=20.34 Aligned_cols=12 Identities=25% Similarity=0.243 Sum_probs=7.8
Q ss_pred HHHHHhHHHHHH
Q 027759 187 MWIQNMKIKLIV 198 (219)
Q Consensus 187 ~~~~~~k~~~ii 198 (219)
.||+++|..++-
T Consensus 2 e~~~~~~~~iiG 13 (51)
T PF10031_consen 2 EFWKNHRGKIIG 13 (51)
T ss_pred hHHHHCcchHHH
Confidence 478888755543
No 121
>PHA02975 hypothetical protein; Provisional
Probab=37.95 E-value=46 Score=21.65 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 027759 194 IKLIVLGIIIAL 205 (219)
Q Consensus 194 ~~~ii~~vv~~~ 205 (219)
++++++.+++++
T Consensus 47 ~ii~i~~v~~~~ 58 (69)
T PHA02975 47 LIIFIIFITCIA 58 (69)
T ss_pred HHHHHHHHHHHH
Confidence 333333343333
No 122
>PHA03386 P10 fibrous body protein; Provisional
Probab=37.78 E-value=93 Score=21.57 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHhHHHH
Q 027759 129 SKLAKVKAQVSEVKGV 144 (219)
Q Consensus 129 dkl~~i~~~l~~vk~i 144 (219)
+|+..+|.+|++++.-
T Consensus 19 ~KVdaLQ~qV~dv~~n 34 (94)
T PHA03386 19 TKVDALQTQLNGLEED 34 (94)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 7778888888877643
No 123
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=37.48 E-value=1.7e+02 Score=23.30 Aligned_cols=11 Identities=18% Similarity=0.443 Sum_probs=4.4
Q ss_pred HHHHHhHHHHH
Q 027759 135 KAQVSEVKGVM 145 (219)
Q Consensus 135 ~~~l~~vk~im 145 (219)
.++++...+..
T Consensus 107 ~~~i~~~~~~i 117 (204)
T PF00517_consen 107 EKEISNYTGNI 117 (204)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhcccHHHH
Confidence 34444443333
No 124
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=37.40 E-value=31 Score=26.11 Aligned_cols=11 Identities=18% Similarity=0.157 Sum_probs=4.4
Q ss_pred hHHHHHHHHHH
Q 027759 192 MKIKLIVLGII 202 (219)
Q Consensus 192 ~k~~~ii~~vv 202 (219)
.|+++.+.+.+
T Consensus 119 nklilaisvtv 129 (154)
T PF14914_consen 119 NKLILAISVTV 129 (154)
T ss_pred chhHHHHHHHH
Confidence 34444443333
No 125
>PF14992 TMCO5: TMCO5 family
Probab=36.71 E-value=2.6e+02 Score=23.61 Aligned_cols=15 Identities=13% Similarity=0.514 Sum_probs=9.9
Q ss_pred HHHHHHHHHHhHHHH
Q 027759 182 KMRRKMWIQNMKIKL 196 (219)
Q Consensus 182 ~l~~~~~~~~~k~~~ 196 (219)
+-++..|.+..++.+
T Consensus 208 ~~~~~~wkr~lr~l~ 222 (280)
T PF14992_consen 208 KNSPTFWKRALRLLF 222 (280)
T ss_pred hhhhHHHHHHHHHHH
Confidence 334677888888743
No 126
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=36.46 E-value=1.6e+02 Score=21.09 Aligned_cols=48 Identities=17% Similarity=0.364 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHhh----hHHHHHHHHHhhhHHHHHHHHH
Q 027759 130 KLAKVKAQVSEVKGVMMENIEKVLDR----GEKIELLVDKTENLRSQAQDFR 177 (219)
Q Consensus 130 kl~~i~~~l~~vk~im~~Ni~~vl~R----ge~L~~l~~ks~~L~~~s~~f~ 177 (219)
++..++.+++++++=|.+.-|+.-.. ..|+|+|+++...|......++
T Consensus 9 q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk 60 (112)
T PF07439_consen 9 QLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLK 60 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333211 2345555555555544333333
No 127
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=36.42 E-value=53 Score=20.73 Aligned_cols=13 Identities=8% Similarity=0.521 Sum_probs=8.2
Q ss_pred HHHHHhHHHHHHH
Q 027759 187 MWIQNMKIKLIVL 199 (219)
Q Consensus 187 ~~~~~~k~~~ii~ 199 (219)
.|...|++++++.
T Consensus 2 ~WladYWWiiLl~ 14 (63)
T PF13980_consen 2 HWLADYWWIILLI 14 (63)
T ss_pred cHHHHHHHHHHHH
Confidence 3777787775443
No 128
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=36.29 E-value=1.7e+02 Score=21.35 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=31.9
Q ss_pred eEEEECCe-EEEEEeeCCEEEEEEec---CCcccchHHHHHHHHHHHHhhhc
Q 027759 46 FTYNCDGH-TFNYLVENGFTYCVVAV---ESAGRQIPIAFLERVKEDFNKRY 93 (219)
Q Consensus 46 ~~~~~~~~-~~~~l~~~~~~~~~vtd---~~~~~~~af~fL~~i~~~f~~~~ 93 (219)
..+..+++ .|.|+...++=|+.+++ ........-.|.+++++.|....
T Consensus 55 ~l~~~~~~~vygyvT~t~~Kfvl~~~~~~~~~~d~~ik~fF~~vh~~Y~~~~ 106 (132)
T PF04628_consen 55 LLDPFEDYKVYGYVTNTGIKFVLVHDMSDNSIRDEDIKQFFKEVHELYVKAL 106 (132)
T ss_dssp EEEEETTEEEEEEETTT--EEEEEECGGG-S--HHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHHhhhccCceeEEEEEecccCCcchHHHHHHHHHHHHHHHHHc
Confidence 34556776 55687778888988887 34445568889999998887655
No 129
>PF13937 DUF4212: Domain of unknown function (DUF4212)
Probab=36.05 E-value=1.1e+02 Score=20.72 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=15.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 027759 184 RRKMWIQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 184 ~~~~~~~~~k~~~ii~~vv~~~~~~ 208 (219)
++..|-+|.+++.++.++=.++.|+
T Consensus 3 ~~~yWr~n~rl~~~lL~iW~vvsfg 27 (81)
T PF13937_consen 3 ARAYWRKNLRLIAILLAIWFVVSFG 27 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888776665544444333
No 130
>PLN03223 Polycystin cation channel protein; Provisional
Probab=35.90 E-value=93 Score=32.23 Aligned_cols=44 Identities=16% Similarity=0.278 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRS 171 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~ 171 (219)
.|.+.+.++.+-+++..+.++=-++++|++++.++++|-.+|.+
T Consensus 1580 ~~~L~~s~erL~~~Q~~l~egQ~k~~~~Q~~la~~q~kl~~l~~ 1623 (1634)
T PLN03223 1580 VDQLQQSLERLAEVQRELAEGQVKVIEGQKQMAERQSRLSQLEN 1623 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 36677778888888888999999999999999999988777654
No 131
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.71 E-value=49 Score=23.94 Aligned_cols=11 Identities=9% Similarity=0.310 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 027759 201 IIIALILIIVL 211 (219)
Q Consensus 201 vv~~~~~~i~~ 211 (219)
+.+++.++|++
T Consensus 104 ~f~lV~~fi~~ 114 (118)
T KOG3385|consen 104 VFSLVAFFILW 114 (118)
T ss_pred HHHHHHHHHhh
Confidence 44444444443
No 132
>PRK10884 SH3 domain-containing protein; Provisional
Probab=35.36 E-value=2.3e+02 Score=22.66 Aligned_cols=10 Identities=0% Similarity=-0.074 Sum_probs=3.8
Q ss_pred HHHhhhHHHH
Q 027759 163 VDKTENLRSQ 172 (219)
Q Consensus 163 ~~ks~~L~~~ 172 (219)
.++-+.++..
T Consensus 145 ~~~l~~~~~~ 154 (206)
T PRK10884 145 KNQLIVAQKK 154 (206)
T ss_pred HHHHHHHHHH
Confidence 3333334433
No 133
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=35.05 E-value=2.1e+02 Score=22.00 Aligned_cols=44 Identities=20% Similarity=0.376 Sum_probs=34.6
Q ss_pred HHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhH
Q 027759 131 LAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 180 (219)
Q Consensus 131 l~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a 180 (219)
+-.+-++++.....|..|- +.+|+.+.++-..|+.+|......+
T Consensus 32 lv~la~~iq~Ad~~~~~~t------~~kL~~I~eQi~~Lq~QA~~ile~~ 75 (159)
T PF10504_consen 32 LVDLAQQIQKADSAMRANT------CNKLEVIAEQIRFLQEQARKILEEA 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777888887 7788899999999998888777654
No 134
>PF10039 DUF2275: Predicted integral membrane protein (DUF2275); InterPro: IPR018734 This domain, found in various hypothetical bacterial proteins and in the RNA polymerase sigma factor, has no known function.
Probab=34.99 E-value=72 Score=25.88 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Q 027759 181 TKMRRKMWIQNMKIKLIVLGIIIA 204 (219)
Q Consensus 181 ~~l~~~~~~~~~k~~~ii~~vv~~ 204 (219)
++.=.++|.+++|.+.++++++++
T Consensus 23 ~~~~~~~~~k~~r~~Al~alil~i 46 (218)
T PF10039_consen 23 KKGVFRMWRKYKRAIALAALILFI 46 (218)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 343345565555555555544443
No 135
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=34.77 E-value=76 Score=27.19 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHhHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVM 145 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im 145 (219)
+.+..++.+++.++.+|
T Consensus 230 ~eL~~iqaqL~tvks~m 246 (372)
T COG3524 230 DELIVIQAQLDTVKSVM 246 (372)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67788899999999999
No 136
>COG4499 Predicted membrane protein [Function unknown]
Probab=34.39 E-value=66 Score=28.44 Aligned_cols=29 Identities=21% Similarity=0.346 Sum_probs=15.0
Q ss_pred HHHHHhccCCCC-CCeeEEEECCeEEEEEe
Q 027759 31 IASQCLQKLPAT-NNKFTYNCDGHTFNYLV 59 (219)
Q Consensus 31 ia~~il~ki~~~-~~k~~~~~~~~~~~~l~ 59 (219)
+-..+|++.||. +...+...+.+.+||-+
T Consensus 40 ~~~~lld~~~~f~~~eit~~~Ds~vIsy~i 69 (434)
T COG4499 40 LLAELLDKSPPFIVAEITEDNDSFVISYPI 69 (434)
T ss_pred HHHHHhccCCCccceeecccCceeEEEecC
Confidence 445667776655 23333344555666543
No 137
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=34.31 E-value=64 Score=21.78 Aligned_cols=20 Identities=30% Similarity=0.670 Sum_probs=9.9
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 027759 191 NMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 191 ~~k~~~ii~~vv~~~~~~i~ 210 (219)
+.|-.+|+.++|++++.+|+
T Consensus 32 ~lKrlliivvVvVlvVvviv 51 (93)
T PF08999_consen 32 NLKRLLIIVVVVVLVVVVIV 51 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEeeehhHHHHH
Confidence 45544555555444444444
No 138
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=34.19 E-value=2.3e+02 Score=25.25 Aligned_cols=25 Identities=8% Similarity=0.208 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcC
Q 027759 191 NMKIKLIVLGIIIALILIIVLSVCH 215 (219)
Q Consensus 191 ~~k~~~ii~~vv~~~~~~i~~~~C~ 215 (219)
-|+|+.++.++.|+++|+++++.++
T Consensus 383 ~F~~vv~~~~~~~~~lf~~i~~~~k 407 (414)
T KOG2662|consen 383 AFKWVVGITFTLCIVLFVVILGYAK 407 (414)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889999988877763
No 139
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=34.14 E-value=1.3e+02 Score=23.02 Aligned_cols=11 Identities=27% Similarity=0.271 Sum_probs=4.5
Q ss_pred HHHHHHHHHhH
Q 027759 183 MRRKMWIQNMK 193 (219)
Q Consensus 183 l~~~~~~~~~k 193 (219)
.|+|+.-|-++
T Consensus 23 ~r~k~~~R~i~ 33 (161)
T PHA02673 23 KRQKAIRRYIK 33 (161)
T ss_pred HHHHHHHHHHH
Confidence 33444434333
No 140
>PF00306 ATP-synt_ab_C: ATP synthase alpha/beta chain, C terminal domain; InterPro: IPR000793 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the C-terminal domain, which forms a left-handed superhelix composed of 4-5 individual helices. The C-terminal domain can vary between the alpha and beta subunits, and between different ATPases []. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3OAA_U 2F43_B 1MAB_B 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B ....
Probab=33.99 E-value=1e+02 Score=21.74 Aligned_cols=41 Identities=15% Similarity=0.334 Sum_probs=28.7
Q ss_pred HHHhHHHHHhhhHHHHHHHHH--hhhHHHHHHHHHHhHHHHHH
Q 027759 145 MMENIEKVLDRGEKIELLVDK--TENLRSQAQDFRQQGTKMRR 185 (219)
Q Consensus 145 m~~Ni~~vl~Rge~L~~l~~k--s~~L~~~s~~f~~~a~~l~~ 185 (219)
+...+..+|.++..|+.+..- ++.|..........++.++.
T Consensus 3 v~~~l~~~Laq~~EL~~~~q~vG~d~L~~~~k~~l~~g~~i~e 45 (113)
T PF00306_consen 3 VAGQLKLILAQYRELEEFVQFVGSDALDDEDKLILERGRRIRE 45 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTCSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence 345666777777777777775 66677777766666777665
No 141
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=33.61 E-value=75 Score=20.92 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=15.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 027759 187 MWIQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 187 ~~~~~~k~~~ii~~vv~~~~~~i 209 (219)
.||+..|..++..+..+++-+.+
T Consensus 2 ~~~~~ik~~~LF~~~T~lfYy~~ 24 (71)
T PF14004_consen 2 RWLDMIKFFLLFTGCTLLFYYAI 24 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888877766666554433
No 142
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=33.58 E-value=40 Score=20.18 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=11.9
Q ss_pred HhHHHHHH-HHHHHHHHHHHHH-Hhc
Q 027759 191 NMKIKLIV-LGIIIALILIIVL-SVC 214 (219)
Q Consensus 191 ~~k~~~ii-~~vv~~~~~~i~~-~~C 214 (219)
+++|.+++ .+++|++++...+ +.|
T Consensus 3 k~rwiili~iv~~Cl~lyl~ald~~C 28 (47)
T PRK10299 3 KFRWVVLVVVVLACLLLWAQVFNMMC 28 (47)
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHh
Confidence 44544443 4455556554443 455
No 143
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.55 E-value=2.9e+02 Score=23.20 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=7.9
Q ss_pred HHHhHHHHHHHHHHH
Q 027759 176 FRQQGTKMRRKMWIQ 190 (219)
Q Consensus 176 f~~~a~~l~~~~~~~ 190 (219)
-...+..|++....+
T Consensus 224 veqg~~~L~kA~~yq 238 (269)
T KOG0811|consen 224 VEQGTENLRKAAKYQ 238 (269)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344456666655443
No 144
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=33.13 E-value=1.5e+02 Score=19.99 Aligned_cols=46 Identities=22% Similarity=0.412 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHh
Q 027759 81 FLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSE 140 (219)
Q Consensus 81 fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~ 140 (219)
+|+++...|..... .++.+....|+.+ ..+|..+..+.++|..+.+
T Consensus 8 ~l~~v~~~~~~~a~----------~~~~~l~~Al~~l----~~~pdnP~~LA~~Qa~l~e 53 (80)
T PRK15326 8 YLDDVSAKFDTGVD----------NLQTQVTEALDKL----AAKPSDPALLAAYQSKLSE 53 (80)
T ss_pred hHHHHHHHHHHHHH----------HHHHHHHHHHHHh----hcCCCCHHHHHHHHHHHHH
Confidence 78888777765331 1223333333333 2455555666666655554
No 145
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=32.91 E-value=3e+02 Score=23.15 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=12.3
Q ss_pred HhHHHHHhhhHHHHHHHHHhhhH
Q 027759 147 ENIEKVLDRGEKIELLVDKTENL 169 (219)
Q Consensus 147 ~Ni~~vl~Rge~L~~l~~ks~~L 169 (219)
.+..++-++.++++..+++.+++
T Consensus 30 ~~~~~~~e~~~~~~e~~~kaeea 52 (306)
T PF04888_consen 30 AQEKKAEEKAEEIEEAQEKAEEA 52 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666555555443
No 146
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=32.51 E-value=1.4e+02 Score=25.42 Aligned_cols=16 Identities=13% Similarity=0.395 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhhc
Q 027759 78 PIAFLERVKEDFNKRY 93 (219)
Q Consensus 78 af~fL~~i~~~f~~~~ 93 (219)
+-.||+.+.++|....
T Consensus 246 ~~~~Ldklh~eit~~L 261 (384)
T KOG0972|consen 246 VGPYLDKLHKEITKAL 261 (384)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4557888887776554
No 147
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=32.14 E-value=2.6e+02 Score=26.05 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQ 178 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~ 178 (219)
.+++...++.+++++.-=.+|..++.++-+.++.|........+....|++
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~ 240 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKN 240 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999888855567778888888888777766665554444433
No 148
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=31.55 E-value=1.9e+02 Score=20.45 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=10.0
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 027759 186 KMWIQNMKIKLIVLGIII 203 (219)
Q Consensus 186 ~~~~~~~k~~~ii~~vv~ 203 (219)
+.-|++|...+++.+++.
T Consensus 39 ki~~KKyg~~~il~~l~~ 56 (104)
T PF12420_consen 39 KIIFKKYGLIFILPFLVP 56 (104)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 345666666666554443
No 149
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=31.30 E-value=1.1e+02 Score=20.72 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=19.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 027759 158 KIELLVDKTENLRSQAQDFRQQGTKMRRKM 187 (219)
Q Consensus 158 ~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (219)
.||.|++|.+.|...-..+-...|+.|+.+
T Consensus 41 ~LD~LE~rnD~l~~~L~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 41 CLDHLEQRNDHLHAQLQELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777666666666665543
No 150
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=30.99 E-value=92 Score=17.40 Aligned_cols=13 Identities=15% Similarity=0.130 Sum_probs=5.2
Q ss_pred HHHHhHHHHHHHH
Q 027759 188 WIQNMKIKLIVLG 200 (219)
Q Consensus 188 ~~~~~k~~~ii~~ 200 (219)
+.+-.++..++.+
T Consensus 4 ~~~~H~W~Gl~~g 16 (37)
T PF13706_consen 4 LRKLHRWLGLILG 16 (37)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 151
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=30.91 E-value=4.3e+02 Score=25.59 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=14.2
Q ss_pred HHHHhHHHHHHHhHHHHHhhhHHHHH
Q 027759 136 AQVSEVKGVMMENIEKVLDRGEKIEL 161 (219)
Q Consensus 136 ~~l~~vk~im~~Ni~~vl~Rge~L~~ 161 (219)
+++.+..+.+.+.++.+.+|.+.|..
T Consensus 589 ~~l~~~ae~LaeR~e~a~d~Qe~L~~ 614 (717)
T PF10168_consen 589 KSLRESAEKLAERYEEAKDKQEKLMK 614 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444456666666666665543
No 152
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=30.71 E-value=51 Score=25.27 Aligned_cols=54 Identities=24% Similarity=0.411 Sum_probs=33.6
Q ss_pred HHHHHHHhccCCCC----CCeeEEEE-CCeEEE-EEeeCCEEEEEEecCCc-ccchHHHHH
Q 027759 29 TSIASQCLQKLPAT----NNKFTYNC-DGHTFN-YLVENGFTYCVVAVESA-GRQIPIAFL 82 (219)
Q Consensus 29 ~~ia~~il~ki~~~----~~k~~~~~-~~~~~~-~l~~~~~~~~~vtd~~~-~~~~af~fL 82 (219)
...|+.++++...+ +.++.+.- -|.+|| |..++|-.|+.+..|+- +.+.++.||
T Consensus 65 q~QA~~ile~~~~~~~l~~A~cnF~pipG~iYhLY~r~~G~~ylSmisP~EWg~~~p~~fl 125 (159)
T PF10504_consen 65 QEQARKILEEAERNEELHHAKCNFEPIPGQIYHLYRRENGQDYLSMISPEEWGGSCPHEFL 125 (159)
T ss_pred HHHHHHHHHHHHHhHHHhhcccCceecCCCEEEEEECCCCCEEEEeeCHHHhCCCCCcCEE
Confidence 45667777776654 46677764 577887 55667877777766543 444444343
No 153
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.97 E-value=3e+02 Score=22.28 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHhhh--------HHHHHHHHH---hhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 027759 130 KLAKVKAQVSEVKGVMMENIEKVLDRG--------EKIELLVDK---TENLRSQAQDFRQQGTKMRRKMWIQNMKIKLI 197 (219)
Q Consensus 130 kl~~i~~~l~~vk~im~~Ni~~vl~Rg--------e~L~~l~~k---s~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~i 197 (219)
=|.++++.-++++. .+|+.++.+-- ++|+++..+ .+.|+..+..+...|++-+...-.=|.+..+.
T Consensus 119 ~IQk~Kk~ynd~r~--~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~ 195 (216)
T KOG0862|consen 119 FIQKTKKRYNDTRS--QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIR 195 (216)
T ss_pred HHHHHHHHhcCcHH--HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHH
Confidence 45667777777754 44444443322 334444443 34455667777777766655554444443333
No 154
>PRK09697 protein secretion protein GspB; Provisional
Probab=29.82 E-value=45 Score=23.97 Aligned_cols=28 Identities=7% Similarity=0.196 Sum_probs=16.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhc
Q 027759 185 RKMWIQNMKIKLIVLGIIIALILIIVLSVC 214 (219)
Q Consensus 185 ~~~~~~~~k~~~ii~~vv~~~~~~i~~~~C 214 (219)
.-||-++..-. |+.|+|+.++.+|.+.|
T Consensus 17 ~~~~~~~~~~T--I~~Vi~L~~~~L~~AG~ 44 (139)
T PRK09697 17 PGIFSRQKHST--IIYVICLLLICLWFAGM 44 (139)
T ss_pred cchhhhhhccc--hHHHHHHHHHHHHHhcc
Confidence 45665554433 44566777777777666
No 155
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=29.69 E-value=43 Score=26.94 Aligned_cols=9 Identities=22% Similarity=0.449 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 027759 193 KIKLIVLGI 201 (219)
Q Consensus 193 k~~~ii~~v 201 (219)
|+-+++.+|
T Consensus 127 K~amLIClI 135 (227)
T PF05399_consen 127 KMAMLICLI 135 (227)
T ss_pred chhHHHHHH
Confidence 433333333
No 156
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=29.55 E-value=82 Score=27.73 Aligned_cols=16 Identities=6% Similarity=-0.054 Sum_probs=8.9
Q ss_pred HHHHHHhHHHHHHHHH
Q 027759 186 KMWIQNMKIKLIVLGI 201 (219)
Q Consensus 186 ~~~~~~~k~~~ii~~v 201 (219)
+.+|++.+++++++++
T Consensus 34 ~~L~r~k~~Il~~~~~ 49 (377)
T PRK10381 34 SVLWKAKKTIIAITFA 49 (377)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666555443
No 157
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=29.08 E-value=19 Score=24.77 Aligned_cols=26 Identities=4% Similarity=-0.081 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhc
Q 027759 189 IQNMKIKLIVLGIIIALILIIVLSVC 214 (219)
Q Consensus 189 ~~~~k~~~ii~~vv~~~~~~i~~~~C 214 (219)
|.++-..+|+.++.++++|+.|.++-
T Consensus 34 ws~vv~v~i~~lvaVg~~YL~y~~fL 59 (91)
T PF01708_consen 34 WSRVVEVAIFTLVAVGCLYLAYTWFL 59 (91)
T ss_pred ceeEeeeeehHHHHHHHHHHHHHHHH
Confidence 56666666666677777777776653
No 158
>PF03555 Flu_C_NS2: Influenza C non-structural protein (NS2); InterPro: IPR005188 The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1 IPR005187 from INTERPRO as well as the NS2 protein. The NS2 protein is only about 60 amino acids in length and of unknown function.
Probab=28.83 E-value=1.2e+02 Score=18.14 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=21.4
Q ss_pred HHHHHhHHHHHhhhHHHHHHHH-HhhhHHHHHH
Q 027759 143 GVMMENIEKVLDRGEKIELLVD-KTENLRSQAQ 174 (219)
Q Consensus 143 ~im~~Ni~~vl~Rge~L~~l~~-ks~~L~~~s~ 174 (219)
+.|.=--.++|+|.|.||.-.+ +.+.+..+.+
T Consensus 5 nlmafvatkmlerqedldtctemqvekmkastk 37 (57)
T PF03555_consen 5 NLMAFVATKMLERQEDLDTCTEMQVEKMKASTK 37 (57)
T ss_pred hHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhHH
Confidence 4555556789999999987544 4555555544
No 159
>PRK14125 cell division suppressor protein YneA; Provisional
Probab=28.81 E-value=88 Score=22.09 Aligned_cols=15 Identities=7% Similarity=0.189 Sum_probs=8.8
Q ss_pred HHHHHHhHHHHHHHH
Q 027759 186 KMWIQNMKIKLIVLG 200 (219)
Q Consensus 186 ~~~~~~~k~~~ii~~ 200 (219)
++.|+.+++.+|+.+
T Consensus 2 ~~~~~~~~~~ii~~~ 16 (103)
T PRK14125 2 KLKESKIHVSIFFVL 16 (103)
T ss_pred chHHHHHHHHHHHHH
Confidence 456777776654443
No 160
>PF08858 IDEAL: IDEAL domain; InterPro: IPR014957 This entry represents the C-terminal domain of Bacteriophage SPP1, p90. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. his domain may also be referred to as the IDEAL domain, after the sequence of the most conserved region of the domain.; PDB: 3DO9_A.
Probab=28.80 E-value=1.1e+02 Score=17.15 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=12.5
Q ss_pred HHHHHHHhHHHHHhhhHH
Q 027759 141 VKGVMMENIEKVLDRGEK 158 (219)
Q Consensus 141 vk~im~~Ni~~vl~Rge~ 158 (219)
-++-+...||..|++|++
T Consensus 10 ~~~~L~~~ID~ALd~~D~ 27 (37)
T PF08858_consen 10 RKEQLLELIDEALDNRDK 27 (37)
T ss_dssp HHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHcCCH
Confidence 345566788888888865
No 161
>PF03238 ESAG1: ESAG protein; InterPro: IPR004922 Trypanosoma brucei is the causative agent of sleeping sickness in humans and nagana in cattle. The parasite lives extracellularly in the blood and tissue fluids of the mammalian host, and is transmitted by the bite of infected tsetse. Each variant surface glycoprotein (Vsg) expression site (ES) in bloodstream-form T. brucei is a polycistronic transcription unit containing several distinct expression site-associated genes (esag), in addition to a single vsg gene. They are co-transcribed with the gene encoding the VSG protein, forming the surface coat of the parasite. ESAG1 genes from different ESs encode a highly polymorphic family of membrane-associated glycoproteins, whose function is unknown [].
Probab=28.30 E-value=2.1e+02 Score=23.16 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=37.2
Q ss_pred HhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Q 027759 147 ENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGI 201 (219)
Q Consensus 147 ~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~v 201 (219)
+.++|++.-|..+.+|+.|...|=..-..--|.-|+.---...+.-|+|-.++=|
T Consensus 7 dKLEKLISyGN~MGDLVaKvGGLFAeVNESVRaVRkeiP~ALikaNKYYTAiAEI 61 (231)
T PF03238_consen 7 DKLEKLISYGNEMGDLVAKVGGLFAEVNESVRAVRKEIPGALIKANKYYTAIAEI 61 (231)
T ss_pred hhHHHHHHcCcchhhHHHhccchhHHHHHHHHHHHHHChHHHHHHHHHHHHHHHH
Confidence 4677888888888899988888876655544444443344566677777666544
No 162
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.18 E-value=3.3e+02 Score=22.18 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=13.9
Q ss_pred HHHHHHHHHhHHHHHHHHHH--HHHHHHHH
Q 027759 183 MRRKMWIQNMKIKLIVLGII--IALILIIV 210 (219)
Q Consensus 183 l~~~~~~~~~k~~~ii~~vv--~~~~~~i~ 210 (219)
+=++.--|+-|=.+|+++|+ |.++++++
T Consensus 199 Ll~kIk~kkrrdslILa~Vis~C~llllfy 228 (231)
T KOG3208|consen 199 LLQKIKIKKRRDSLILAAVISVCTLLLLFY 228 (231)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 34445555555556665554 43444443
No 163
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.04 E-value=3e+02 Score=23.13 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHH
Q 027759 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQA 173 (219)
Q Consensus 130 kl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s 173 (219)
.+.++..-+..+|+...+-=.++=...++|+.+.++++.+...-
T Consensus 219 NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v 262 (273)
T KOG3065|consen 219 NLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRV 262 (273)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHH
Confidence 44455555555555544443444456677888888888877553
No 164
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=27.92 E-value=33 Score=23.93 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=7.3
Q ss_pred HHHHHHHHhcCC
Q 027759 205 LILIIVLSVCHG 216 (219)
Q Consensus 205 ~~~~i~~~~C~g 216 (219)
+.++.|+++|++
T Consensus 83 v~~l~w~f~~r~ 94 (96)
T PTZ00382 83 VGFLCWWFVCRG 94 (96)
T ss_pred HHHHhheeEEee
Confidence 345667777754
No 165
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=27.23 E-value=1.2e+02 Score=25.05 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 027759 180 GTKMRRKMWIQNMKIKLIVLGIIIAL 205 (219)
Q Consensus 180 a~~l~~~~~~~~~k~~~ii~~vv~~~ 205 (219)
+.+-+--.||..|.+++++++.+.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (249)
T PRK15348 209 ANKGKVVKWLMKYPYQLMLSLTGLLL 234 (249)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445568999999888877665443
No 166
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=27.16 E-value=31 Score=26.77 Aligned_cols=14 Identities=50% Similarity=0.921 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhc
Q 027759 201 IIIALILIIVLSVC 214 (219)
Q Consensus 201 vv~~~~~~i~~~~C 214 (219)
|++++++||++.+|
T Consensus 84 vi~~Vi~Iv~~Iv~ 97 (179)
T PF13908_consen 84 VICGVIAIVVLIVC 97 (179)
T ss_pred hhhHHHHHHHhHhh
Confidence 43444444545555
No 167
>PF13044 DUF3904: Protein of unknown function (DUF3904)
Probab=27.10 E-value=2.3e+02 Score=23.66 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHhc
Q 027759 181 TKMRRKMWIQNMKIKLIVLGIIIAL-ILIIVLSVC 214 (219)
Q Consensus 181 ~~l~~~~~~~~~k~~~ii~~vv~~~-~~~i~~~~C 214 (219)
+.+--..||--+--|||++++|+++ ++.+=+|.|
T Consensus 401 kevtgtswwmvmihyiivgliviv~vv~glklwgc 435 (436)
T PF13044_consen 401 KEVTGTSWWMVMIHYIIVGLIVIVVVVFGLKLWGC 435 (436)
T ss_pred hhccCcchHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 4455566777666677776655443 333334444
No 168
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=27.05 E-value=1.2e+02 Score=16.52 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=7.5
Q ss_pred HHHHHHHhHHHHHHHH
Q 027759 185 RKMWIQNMKIKLIVLG 200 (219)
Q Consensus 185 ~~~~~~~~k~~~ii~~ 200 (219)
|+.|++-.++..++.+
T Consensus 2 r~~~~~~H~~~g~~~~ 17 (34)
T PF13172_consen 2 RKFWRKIHRWLGLIAA 17 (34)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445555554444443
No 169
>PRK00807 50S ribosomal protein L24e; Validated
Probab=26.99 E-value=84 Score=19.20 Aligned_cols=23 Identities=13% Similarity=0.251 Sum_probs=17.3
Q ss_pred cCCCCCCeeEEEECCeEEEEEee
Q 027759 38 KLPATNNKFTYNCDGHTFNYLVE 60 (219)
Q Consensus 38 ki~~~~~k~~~~~~~~~~~~l~~ 60 (219)
+|.|++.+..+..||..|+|+..
T Consensus 10 ~I~pg~G~~~vr~Dgkv~~Fcs~ 32 (52)
T PRK00807 10 EIEPGTGKMYVKKDGTILYFCSS 32 (52)
T ss_pred eEcCCCCeEEEEeCCcEEEEeCH
Confidence 46677777777888888888763
No 170
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=26.89 E-value=1.2e+02 Score=28.38 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHhH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENI 149 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni 149 (219)
.+-+..++++++.+.++..+|=
T Consensus 441 ~~~i~~l~~~~~sl~~~v~qnr 462 (561)
T PF00429_consen 441 EDSISALQEQLTSLAEVVLQNR 462 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCc
Confidence 3788889999999999887774
No 171
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=26.83 E-value=64 Score=20.74 Aligned_cols=9 Identities=11% Similarity=0.184 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 027759 195 KLIVLGIII 203 (219)
Q Consensus 195 ~~ii~~vv~ 203 (219)
|+++.+++.
T Consensus 2 WIiiSIvLa 10 (66)
T PF07438_consen 2 WIIISIVLA 10 (66)
T ss_pred hhhHHHHHH
Confidence 445544433
No 172
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=26.56 E-value=1e+02 Score=23.27 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhH
Q 027759 180 GTKMRRKMWIQNMK 193 (219)
Q Consensus 180 a~~l~~~~~~~~~k 193 (219)
..+++|.-+|++++
T Consensus 85 ~sk~~r~n~~kk~~ 98 (147)
T PF05659_consen 85 CSKVRRWNLYKKPR 98 (147)
T ss_pred hccccHHHHHhhHh
Confidence 33444444444443
No 173
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=26.33 E-value=1.2e+02 Score=26.70 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=20.5
Q ss_pred HHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHH
Q 027759 162 LVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLI 197 (219)
Q Consensus 162 l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~i 197 (219)
..+|+.+---.++.|-.+-+.-+|-+|-|.+++-++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (379)
T PRK12430 106 VIKKTNDTLLQKNNFNRSLKNFSKTSWKKTMFYRII 141 (379)
T ss_pred HHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Confidence 334444433444556665566667777777766655
No 174
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=26.28 E-value=3.1e+02 Score=21.19 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHh
Q 027759 130 KLAKVKAQVSEVKGVMMENIEKVLD 154 (219)
Q Consensus 130 kl~~i~~~l~~vk~im~~Ni~~vl~ 154 (219)
++.+..++..+-.+.+.+.+.+.++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~e~l~ 188 (275)
T PF00664_consen 164 KIRKLSKKYQEANSELNSFLSESLS 188 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccchh
Confidence 4444444444444444444444443
No 175
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=26.00 E-value=1.7e+02 Score=19.96 Aligned_cols=10 Identities=10% Similarity=0.444 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 027759 201 IIIALILIIV 210 (219)
Q Consensus 201 vv~~~~~~i~ 210 (219)
+++..++++|
T Consensus 23 v~~~a~~~v~ 32 (97)
T PF04999_consen 23 VLISALGVVY 32 (97)
T ss_pred HHHHHHHHHH
Confidence 3333334444
No 176
>KOG4827 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.95 E-value=45 Score=26.54 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=14.3
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 027759 185 RKMWIQNMKIKLIVLGIIIA 204 (219)
Q Consensus 185 ~~~~~~~~k~~~ii~~vv~~ 204 (219)
.+-+|.+||||+|-.++|++
T Consensus 238 eRSF~AKYWMYiiPlglVVl 257 (279)
T KOG4827|consen 238 ERSFLAKYWMYIIPLGLVVL 257 (279)
T ss_pred chhHHHHHHHhhccchhhhh
Confidence 45678899999986555443
No 177
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=25.93 E-value=3.2e+02 Score=21.28 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=21.3
Q ss_pred HHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHH
Q 027759 133 KVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQ 178 (219)
Q Consensus 133 ~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~ 178 (219)
..++++++--.-+.+.|+.+=+-..+...|.+|+..|...=..|.+
T Consensus 120 ~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 120 QTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333334444444444444455555555555555555543
No 178
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=25.79 E-value=82 Score=22.09 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=10.3
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 027759 188 WIQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 188 ~~~~~k~~~ii~~vv~~~~ 206 (219)
...|.++-+++++++..++
T Consensus 75 ~~tn~fyGf~igL~i~~lv 93 (97)
T PF05440_consen 75 IFTNMFYGFIIGLVIAGLV 93 (97)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3445556666666554433
No 179
>PHA02692 hypothetical protein; Provisional
Probab=25.76 E-value=52 Score=21.53 Aligned_cols=8 Identities=38% Similarity=0.530 Sum_probs=3.4
Q ss_pred HHhHHHHH
Q 027759 138 VSEVKGVM 145 (219)
Q Consensus 138 l~~vk~im 145 (219)
+|-|+.+|
T Consensus 24 i~vVksVL 31 (70)
T PHA02692 24 LNIVRTVM 31 (70)
T ss_pred HHHHHHHH
Confidence 34444443
No 180
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=25.53 E-value=3.1e+02 Score=22.28 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=29.1
Q ss_pred HhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhh
Q 027759 110 FGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTEN 168 (219)
Q Consensus 110 f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~ 168 (219)
.+..++.+|++. .- .+.|--..+++++.--+..+.. +.+++++..++++.++.+.
T Consensus 136 ~~~Ql~Rl~~Rd-~l-se~dAe~Rl~sQmp~~~k~~~a--~~Vi~Nng~~~~l~~qv~~ 190 (225)
T KOG3220|consen 136 EELQLERLVERD-EL-SEEDAENRLQSQMPLEKKCELA--DVVIDNNGSLEDLYEQVEK 190 (225)
T ss_pred cHHHHHHHHHhc-cc-cHHHHHHHHHhcCCHHHHHHhh--heeecCCCChHHHHHHHHH
Confidence 345666666553 11 1224445555555444444333 3477777777777655544
No 181
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=25.36 E-value=2.3e+02 Score=22.79 Aligned_cols=71 Identities=20% Similarity=0.326 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhhcCCCCcccccccc-chHHHhHHHHHhchhhcCCch---------hhhHHHHHHHHHHhHHHHHHH
Q 027759 78 PIAFLERVKEDFNKRYGGGKAATAVANS-LNKEFGSKLKEHMQYCVDHPE---------EISKLAKVKAQVSEVKGVMME 147 (219)
Q Consensus 78 af~fL~~i~~~f~~~~~~~~~~~~~~~~-~~~~f~~~l~~~~~~~~~~~~---------~~dkl~~i~~~l~~vk~im~~ 147 (219)
+..||++|-......... ...++ -+..|...|.++-.++..++. ...+..+.-+++++-+..|.+
T Consensus 14 t~~~ik~liK~c~~li~A-----~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~ 88 (207)
T cd07634 14 TNKFIKELIKDGSLLIGA-----LRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQ 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777766655433211 11111 134566666665544433331 224555666667777777777
Q ss_pred hHHHHH
Q 027759 148 NIEKVL 153 (219)
Q Consensus 148 Ni~~vl 153 (219)
|++..+
T Consensus 89 ~~~~~l 94 (207)
T cd07634 89 NANDVL 94 (207)
T ss_pred HHHHHH
Confidence 765444
No 182
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.19 E-value=3.8e+02 Score=23.83 Aligned_cols=15 Identities=7% Similarity=0.291 Sum_probs=7.3
Q ss_pred HHHhhhHHHHHHHHH
Q 027759 151 KVLDRGEKIELLVDK 165 (219)
Q Consensus 151 ~vl~Rge~L~~l~~k 165 (219)
.+-||+++|+..-++
T Consensus 130 ~~gE~~G~L~~~l~~ 144 (397)
T COG1459 130 AAGERSGNLDEVLQR 144 (397)
T ss_pred HHHHhcCCHHHHHHH
Confidence 344555555544433
No 183
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.12 E-value=2.7e+02 Score=22.27 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=16.5
Q ss_pred HHHHhHHHHHHHhHHHHHhhh
Q 027759 136 AQVSEVKGVMMENIEKVLDRG 156 (219)
Q Consensus 136 ~~l~~vk~im~~Ni~~vl~Rg 156 (219)
..++-..+.|.++||..|+..
T Consensus 133 e~Mdm~~Emm~daIDdal~~~ 153 (224)
T KOG3230|consen 133 EIMDMKEEMMDDAIDDALGDD 153 (224)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 445777888999999999644
No 184
>KOG3658 consensus Tumor necrosis factor-alpha-converting enzyme (TACE/ADAM17) and related metalloproteases [Extracellular structures]
Probab=24.93 E-value=93 Score=29.58 Aligned_cols=29 Identities=17% Similarity=0.603 Sum_probs=20.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcC
Q 027759 187 MWIQNMKIKLIVLGIIIALILIIVLSVCH 215 (219)
Q Consensus 187 ~~~~~~k~~~ii~~vv~~~~~~i~~~~C~ 215 (219)
.|...-||...|.+++++++.++|+.+|.
T Consensus 677 ~w~~~~w~~v~i~gi~~i~~m~~fik~~a 705 (764)
T KOG3658|consen 677 EWIVLNWLAVNIVGIVLIVLMAFFIKICA 705 (764)
T ss_pred HHHHhhhHHhHhHHHHHHHHHHHhhhheE
Confidence 46666666667777777788888888873
No 185
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=24.91 E-value=4.4e+02 Score=22.48 Aligned_cols=46 Identities=20% Similarity=0.426 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTK 182 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~ 182 (219)
.++..+..++++.+.++..| +.+..|...++.+...+..|+.....
T Consensus 138 q~I~~L~k~le~~~k~~e~~--------~~~~el~aei~~lk~~~~e~~eki~~ 183 (294)
T COG1340 138 QKIKELRKELEDAKKALEEN--------EKLKELKAEIDELKKKAREIHEKIQE 183 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555443 34444444444444444444443333
No 186
>PHA02947 S-S bond formation pathway protein; Provisional
Probab=24.87 E-value=67 Score=25.88 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 027759 192 MKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 192 ~k~~~ii~~vv~~~~~~i~ 210 (219)
.++|+|++++++++++++.
T Consensus 177 ~~~W~i~~~~~i~~i~~i~ 195 (215)
T PHA02947 177 NKPWFIVGVVIILIIFVIA 195 (215)
T ss_pred CCchHHHHHHHHHHHHHHH
Confidence 4456666666666666553
No 187
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.84 E-value=2.9e+02 Score=25.86 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhh
Q 027759 79 IAFLERVKEDFNK 91 (219)
Q Consensus 79 f~fL~~i~~~f~~ 91 (219)
-.|-++|+.....
T Consensus 529 ~~f~k~i~s~lqr 541 (741)
T KOG4460|consen 529 DSFEKHIRSILQR 541 (741)
T ss_pred CcHHHHHHHhhhh
Confidence 3356666655543
No 188
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=24.68 E-value=3.4e+02 Score=21.19 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEK 151 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~ 151 (219)
+.+.+..++.+++-+.+.+++++
T Consensus 156 ~~~~~~l~e~~~~L~~l~~~f~~ 178 (199)
T PF10112_consen 156 EEIKQSLEEIEETLDTLNQAFEK 178 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555543
No 189
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=24.50 E-value=1.5e+02 Score=17.11 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHhhhHHHHHHHHHhh
Q 027759 142 KGVMMENIEKVLDRGEKIELLVDKTE 167 (219)
Q Consensus 142 k~im~~Ni~~vl~Rge~L~~l~~ks~ 167 (219)
.+.+.+|-..+|...+-++.++++-+
T Consensus 9 eeLV~eNK~ell~d~~~me~Ieerie 34 (40)
T PF13040_consen 9 EELVRENKQELLNDKEAMEKIEERIE 34 (40)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 34566677777777777777766544
No 190
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=24.45 E-value=3e+02 Score=20.40 Aligned_cols=11 Identities=9% Similarity=0.410 Sum_probs=5.7
Q ss_pred ccchHHHHHHH
Q 027759 74 GRQIPIAFLER 84 (219)
Q Consensus 74 ~~~~af~fL~~ 84 (219)
|-..|..||++
T Consensus 23 pv~~al~~ld~ 33 (142)
T PF04048_consen 23 PVELALSLLDD 33 (142)
T ss_pred HHHHHHHhcCC
Confidence 44555555554
No 191
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=24.43 E-value=1.2e+02 Score=18.94 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHhccCCCC-CCeeEEEECCeEEEEEe--eCCEEEEEEecCC
Q 027759 25 TGNFTSIASQCLQKLPAT-NNKFTYNCDGHTFNYLV--ENGFTYCVVAVES 72 (219)
Q Consensus 25 ~~~~~~ia~~il~ki~~~-~~k~~~~~~~~~~~~l~--~~~~~~~~vtd~~ 72 (219)
-.+|+.+...+-+++... .-+.-|+.+|...+-+. .+|-.|+|...+.
T Consensus 8 ~~s~e~lL~~it~~v~l~~gVr~lyt~~G~~V~~l~~l~dg~~yVa~g~e~ 58 (60)
T PF03607_consen 8 FRSFEQLLDEITEKVQLPSGVRKLYTLDGKRVKSLDELEDGGSYVASGREP 58 (60)
T ss_dssp HSSHHHHHHHHHHSSSSTTS-SEEEETTSSEESSGGGS-TTEEEEEESSSS
T ss_pred hcCHHHHHHHHHhhcCCCcccceEECCCCCEeCCHHHHCCCCEEEEEcCCc
Confidence 367888888888887654 25667888887665443 4788899986543
No 192
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=24.35 E-value=1.4e+02 Score=19.80 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHhccCCC--CCCeeEEEECC-eEEEEEe--eCCEEEEEEecCCc
Q 027759 25 TGNFTSIASQCLQKLPA--TNNKFTYNCDG-HTFNYLV--ENGFTYCVVAVESA 73 (219)
Q Consensus 25 ~~~~~~ia~~il~ki~~--~~~k~~~~~~~-~~~~~l~--~~~~~~~~vtd~~~ 73 (219)
-.+|+.+...+-+++.+ +.-+..++.+| +...-+. ++|-.|+|...+.+
T Consensus 25 ~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~~~v~~~~~l~~g~~yVa~g~e~f 78 (80)
T cd01617 25 FKSFDALLDDLTEKVQLDPGAVRKLYTLDGGHRVSLLDELEDGGVYVASGREPF 78 (80)
T ss_pred hCCHHHHHHHHHHHhCCCCCcEEEEEcCCCCeEeccHHHhcCCCEEEEECCCCC
Confidence 46899998888888874 45566788877 5554332 57999999876543
No 193
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=24.05 E-value=83 Score=22.98 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=18.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027759 187 MWIQNMKIKLIVLGIIIALILIIVLS 212 (219)
Q Consensus 187 ~~~~~~k~~~ii~~vv~~~~~~i~~~ 212 (219)
.|-==-||+++|+..-++++|++++.
T Consensus 18 lw~iItKWyL~IavaSlI~lyy~v~g 43 (139)
T PF10875_consen 18 LWSIITKWYLIIAVASLITLYYTVLG 43 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444578899888878888887754
No 194
>COG3771 Predicted membrane protein [Function unknown]
Probab=23.85 E-value=58 Score=22.36 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCCC
Q 027759 205 LILIIVLSVCHGF 217 (219)
Q Consensus 205 ~~~~i~~~~C~gf 217 (219)
+-+++-+.+||+|
T Consensus 51 ~G~~lgwli~g~f 63 (97)
T COG3771 51 AGFALGWLICGLF 63 (97)
T ss_pred HHHHHHHHHHHHH
Confidence 3445556788877
No 195
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=23.68 E-value=1.5e+02 Score=25.48 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=35.1
Q ss_pred HHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 027759 150 EKVLDRGEKIELLVDKTENLRSQAQDFRQQGT--KMRRKMWIQNMKIKLIVLGIIIALILIIVLSVCHGF 217 (219)
Q Consensus 150 ~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~--~l~~~~~~~~~k~~~ii~~vv~~~~~~i~~~~C~gf 217 (219)
..-++=|.|.+.|..+-+-..+....+..+.. ...+--|| ++++|++-|++.++=|++-.|+++
T Consensus 266 ~~yLdI~~RvnvLN~Rl~vi~d~l~il~e~ln~~~s~~lEWi----vIiLI~~eVllsl~~i~~~~~~~~ 331 (331)
T COG1723 266 REYLDINPRVNVLNRRLEVISDLLDILNEQLNHSHSTRLEWI----VIILIGLEVLLSLYNIIVKYIGAL 331 (331)
T ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeEEE----ehhHHHHHHHHHHHHHHHHHhcCC
Confidence 33344466666666666655555554443321 11222243 555666667777777777777653
No 196
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=23.00 E-value=2.8e+02 Score=19.50 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=37.5
Q ss_pred HHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhhh
Q 027759 84 RVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRG 156 (219)
Q Consensus 84 ~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rg 156 (219)
+.+++|..-+.... . + ..+....+.+....|+ - .+.+..-+.++..-++-+.+|+..++.+=
T Consensus 2 ea~~ef~~I~~n~~---l---t-~~e~~~~l~~Wa~~~~---v-~~~~~~f~~~~~~~~~~~~~~~~~vi~~L 63 (113)
T PF02520_consen 2 EARKEFFQIFQNPN---L---T-KAEIEEQLDEWAEKYG---V-QDQYNEFKAQVQAQKEEVRKNVTAVISNL 63 (113)
T ss_pred hHHHHHHHHHcCCC---C---C-HHHHHHHHHHHHHHCC---c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777664211 1 1 1345566666666553 1 26777777777777777777777666553
No 197
>PHA01811 hypothetical protein
Probab=22.60 E-value=1.1e+02 Score=19.65 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=14.3
Q ss_pred CeeEEEECCeEEEEEeeC
Q 027759 44 NKFTYNCDGHTFNYLVEN 61 (219)
Q Consensus 44 ~k~~~~~~~~~~~~l~~~ 61 (219)
.-.+....||.+||+-++
T Consensus 5 divtlrvkgyi~hyldd~ 22 (78)
T PHA01811 5 DIVTLRVKGYILHYLDDD 22 (78)
T ss_pred cEEEEEEeeEEEEEEcCc
Confidence 356778899999999764
No 198
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.53 E-value=2.4e+02 Score=18.53 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQA 173 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s 173 (219)
.|.+.-+|-++++.|+.-..=-+.+-+-.+..+.|+...+.|+..-
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777766532222222223334444555555554443
No 199
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=22.33 E-value=1.1e+02 Score=21.36 Aligned_cols=26 Identities=12% Similarity=0.082 Sum_probs=15.3
Q ss_pred HHHHhHHHHHHHHHHHHhHHHHHHHH
Q 027759 175 DFRQQGTKMRRKMWIQNMKIKLIVLG 200 (219)
Q Consensus 175 ~f~~~a~~l~~~~~~~~~k~~~ii~~ 200 (219)
+|-+.+-.....-.|||+-+.+.+.+
T Consensus 35 ~YL~~~y~y~~sh~WRN~GIli~f~i 60 (103)
T PF06422_consen 35 DYLEESYGYSYSHRWRNFGILIAFWI 60 (103)
T ss_pred HHHhhhccccccchhhhHHHHHHHHH
Confidence 34454445556667888875554443
No 200
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=22.32 E-value=1.3e+02 Score=19.62 Aligned_cols=12 Identities=17% Similarity=0.703 Sum_probs=7.0
Q ss_pred hHHHHHHHhHHH
Q 027759 140 EVKGVMMENIEK 151 (219)
Q Consensus 140 ~vk~im~~Ni~~ 151 (219)
+++.+|.+|+..
T Consensus 10 ~L~~ii~~~~~~ 21 (76)
T PF04155_consen 10 ELRKIILKNMKE 21 (76)
T ss_pred HHHHHHHHHhcc
Confidence 455666666643
No 201
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=22.02 E-value=2.1e+02 Score=19.49 Aligned_cols=11 Identities=9% Similarity=0.422 Sum_probs=5.9
Q ss_pred HHHHHHHhHHH
Q 027759 185 RKMWIQNMKIK 195 (219)
Q Consensus 185 ~~~~~~~~k~~ 195 (219)
++...|.+-+.
T Consensus 29 N~sfirdFvLV 39 (84)
T PF06143_consen 29 NRSFIRDFVLV 39 (84)
T ss_pred ChHHHHHHHHH
Confidence 34555666553
No 202
>PF13163 DUF3999: Protein of unknown function (DUF3999)
Probab=21.92 E-value=79 Score=28.34 Aligned_cols=22 Identities=5% Similarity=-0.265 Sum_probs=16.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 027759 189 IQNMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 189 ~~~~k~~~ii~~vv~~~~~~i~ 210 (219)
|+++.+|.++++.|+++.++.|
T Consensus 406 ~~~~~LW~~Lv~gV~vL~~mA~ 427 (429)
T PF13163_consen 406 WKRWLLWGALVLGVAVLGGMAW 427 (429)
T ss_pred hhhhHHHHHHHHHHHHHHHHhe
Confidence 7788888888887777666654
No 203
>PF12277 DUF3618: Protein of unknown function (DUF3618); InterPro: IPR022062 This domain family is found in bacteria, and is approximately 50 amino acids in length.
Probab=21.90 E-value=1.9e+02 Score=17.23 Aligned_cols=27 Identities=7% Similarity=0.276 Sum_probs=22.1
Q ss_pred HHHHHHHHHhHHHHHHHhHHHHHhhhH
Q 027759 131 LAKVKAQVSEVKGVMMENIEKVLDRGE 157 (219)
Q Consensus 131 l~~i~~~l~~vk~im~~Ni~~vl~Rge 157 (219)
...|+.+++.++.-|..+++.+-.|=.
T Consensus 5 ~~~ie~dIe~tR~~La~tvd~L~~r~~ 31 (49)
T PF12277_consen 5 PDEIERDIERTRAELAETVDELAARLS 31 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 467899999999999888887766643
No 204
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=21.75 E-value=3.3e+02 Score=19.87 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=18.3
Q ss_pred HHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Q 027759 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMR 184 (219)
Q Consensus 145 m~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~ 184 (219)
..+|-+.+|+.-..++.+..-.+.+..+-........+++
T Consensus 53 v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~ 92 (132)
T PF10392_consen 53 VTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLR 92 (132)
T ss_pred HHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544444444444444444444443
No 205
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=21.69 E-value=4.2e+02 Score=21.56 Aligned_cols=7 Identities=14% Similarity=0.558 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 027759 172 QAQDFRQ 178 (219)
Q Consensus 172 ~s~~f~~ 178 (219)
.+..|..
T Consensus 21 ~a~~~E~ 27 (229)
T PRK13865 21 EVEAFQT 27 (229)
T ss_pred HHHHHHH
Confidence 3445554
No 206
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=21.55 E-value=58 Score=24.78 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=14.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 027759 187 MWIQNMKIKLIVLGIIIALILIIVL 211 (219)
Q Consensus 187 ~~~~~~k~~~ii~~vv~~~~~~i~~ 211 (219)
.=.|+-|+--|++++++++-.+|++
T Consensus 125 ae~kr~K~Cki~~Li~~~vc~~ilV 149 (159)
T PF06789_consen 125 AELKRSKVCKIFALIVLAVCAVILV 149 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheEE
Confidence 3556777766666655544444433
No 207
>PRK11901 hypothetical protein; Reviewed
Probab=21.31 E-value=1e+02 Score=26.63 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027759 196 LIVLGIIIALILIIVLSV 213 (219)
Q Consensus 196 ~ii~~vv~~~~~~i~~~~ 213 (219)
|-+|++|+++|+|.|.++
T Consensus 40 iGiGilVLlLLIi~IgSA 57 (327)
T PRK11901 40 IGIGILVLLLLIIAIGSA 57 (327)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 344444444444443333
No 208
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=21.18 E-value=3e+02 Score=19.31 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=18.8
Q ss_pred HHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 135 KAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 135 ~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
+..++++...+.++++.+ .++++.|..+-+.|...
T Consensus 62 ~~~~~e~~~~l~~r~e~i---e~~i~~lek~~~~l~~~ 96 (110)
T TIGR02338 62 KTDKEEAIQELKEKKETL---ELRVKTLQRQEERLREQ 96 (110)
T ss_pred eecHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455566666665555555 44555555555555444
No 209
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=21.11 E-value=3.4e+02 Score=20.92 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHH
Q 027759 154 DRGEKIELLVDKTENLRSQAQDF 176 (219)
Q Consensus 154 ~Rge~L~~l~~ks~~L~~~s~~f 176 (219)
+||+.+..+.++-+.|+..-..|
T Consensus 75 ~~a~~~~~~~~R~~~L~~~~~~l 97 (167)
T PF11157_consen 75 ARAESMQATIERYQRLSQQLQAL 97 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555554443333
No 210
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=21.05 E-value=1.2e+02 Score=18.79 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=17.9
Q ss_pred cCCCCCCeeEEEECCeEEEEEee
Q 027759 38 KLPATNNKFTYNCDGHTFNYLVE 60 (219)
Q Consensus 38 ki~~~~~k~~~~~~~~~~~~l~~ 60 (219)
+|.|++.+.-+..||..|+|+..
T Consensus 12 ~I~PG~G~~~Vr~Dgkv~~F~s~ 34 (54)
T cd00472 12 KIYPGHGKMYVRNDGKVFRFCSS 34 (54)
T ss_pred eecCCCccEEEecCCCEEEEECH
Confidence 57788777777788888888764
No 211
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.03 E-value=3.4e+02 Score=20.20 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Q 027759 178 QQGTKMRRKMWIQNMK-IKLIVLGIIIALILIIV 210 (219)
Q Consensus 178 ~~a~~l~~~~~~~~~k-~~~ii~~vv~~~~~~i~ 210 (219)
..+..+-+++.|..-+ +|++-...+++++-+|+
T Consensus 68 ~~av~~~kk~~~fsg~a~Wi~tTt~lIL~vP~i~ 101 (136)
T KOG4111|consen 68 GDAVFVVKKLYSFSGKAAWIATTTFLILVVPLIF 101 (136)
T ss_pred hhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 3344444444444433 44444444444444443
No 212
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=20.99 E-value=1e+02 Score=22.74 Aligned_cols=24 Identities=8% Similarity=0.274 Sum_probs=19.4
Q ss_pred ccCCCCCCeeEEEECCeEEEEEee
Q 027759 37 QKLPATNNKFTYNCDGHTFNYLVE 60 (219)
Q Consensus 37 ~ki~~~~~k~~~~~~~~~~~~l~~ 60 (219)
.+|.|++.+..+..+|..|+|+..
T Consensus 12 ~kIyPG~G~~fVR~DGkvf~Fcss 35 (131)
T PRK14891 12 EEIEPGTGTMFVRKDGTVLHFVDS 35 (131)
T ss_pred CcccCCCCcEEEecCCCEEEEecH
Confidence 457888888888888999988875
No 213
>PF12279 DUF3619: Protein of unknown function (DUF3619); InterPro: IPR022064 This protein is found in bacteria. Proteins in this family are about 140 amino acids in length. This protein has two conserved sequence motifs: AAR and DDLP.
Probab=20.95 E-value=1.7e+02 Score=21.67 Aligned_cols=19 Identities=16% Similarity=0.485 Sum_probs=12.2
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 027759 185 RKMWIQNMKIKLIVLGIII 203 (219)
Q Consensus 185 ~~~~~~~~k~~~ii~~vv~ 203 (219)
..-||.+....+.+..+|+
T Consensus 67 ~~~~~~r~~~~~pl~aLv~ 85 (131)
T PF12279_consen 67 GGSWWRRLGLALPLLALVA 85 (131)
T ss_pred CccHHHHHHHHHHHHHHHH
Confidence 4568888886655555443
No 214
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.80 E-value=3e+02 Score=22.01 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=14.4
Q ss_pred HHHHHhHHHHHHH-hHHHHHhhhHHHHHHHHHhhhHH
Q 027759 135 KAQVSEVKGVMME-NIEKVLDRGEKIELLVDKTENLR 170 (219)
Q Consensus 135 ~~~l~~vk~im~~-Ni~~vl~Rge~L~~l~~ks~~L~ 170 (219)
+.-+.+.|.-+.+ ||+++=+=.+.+.++.+.+++++
T Consensus 110 K~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQ 146 (218)
T KOG1655|consen 110 KDTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQ 146 (218)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333 44444444444444444444433
No 215
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=20.75 E-value=2.2e+02 Score=23.31 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=5.2
Q ss_pred HHHHHHHHhcC
Q 027759 205 LILIIVLSVCH 215 (219)
Q Consensus 205 ~~~~i~~~~C~ 215 (219)
++|+|.+.++|
T Consensus 170 ilF~i~~~~~g 180 (232)
T TIGR00869 170 ILFVLTLIVVK 180 (232)
T ss_pred HHHHHHHHHhC
Confidence 44444445553
No 216
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=20.74 E-value=81 Score=26.66 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHH-HHhhh
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEK-VLDRG 156 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~-vl~Rg 156 (219)
+...++++++-+.=+-|-.+=.. +|..|
T Consensus 103 e~~~klEKel~e~~~~~fg~e~~imlksg 131 (295)
T TIGR01478 103 EPMSTIEKELLEKYEEMFGDESHIMLKSG 131 (295)
T ss_pred chhhHHHHHHHHHHHHHhCCccchhhhcC
Confidence 45567777777776666655554 34444
No 217
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=20.63 E-value=1.4e+02 Score=16.51 Aligned_cols=7 Identities=29% Similarity=0.643 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 027759 205 LILIIVL 211 (219)
Q Consensus 205 ~~~~i~~ 211 (219)
.|++.|.
T Consensus 18 ~ILvFWf 24 (34)
T PF08113_consen 18 FILVFWF 24 (34)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 218
>PRK05529 cell division protein FtsQ; Provisional
Probab=20.61 E-value=89 Score=25.83 Aligned_cols=18 Identities=6% Similarity=0.058 Sum_probs=7.0
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 027759 182 KMRRKMWIQNMKIKLIVL 199 (219)
Q Consensus 182 ~l~~~~~~~~~k~~~ii~ 199 (219)
+..|+..|+...+...++
T Consensus 26 ~~~~~~~~r~~~~~~~~~ 43 (255)
T PRK05529 26 RFTTRIRRRFILLACAVG 43 (255)
T ss_pred chhhhccchhhhHHHHHH
Confidence 333334444333343333
No 219
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=20.32 E-value=86 Score=28.73 Aligned_cols=16 Identities=13% Similarity=0.416 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHhHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVM 145 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im 145 (219)
++++ +-.++..+.+-+
T Consensus 432 ~PlD-IS~eL~~vn~sL 447 (490)
T PF00523_consen 432 DPLD-ISSELGQVNNSL 447 (490)
T ss_dssp SHHH-HHHHHHHHHHHH
T ss_pred Cccc-hhhHHHHHHHHH
Confidence 5555 566665554443
No 220
>PF02937 COX6C: Cytochrome c oxidase subunit VIc; InterPro: IPR004204 Cytochrome c oxidase, a 13 subunit complex, 1.9.3.1 from EC is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit VIc.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3AG4_I 2DYS_V 3ASO_I 2EIK_V 2EIM_I 1OCC_V 1V54_V 1OCO_V 3ASN_V 2EIL_I ....
Probab=20.06 E-value=2.4e+02 Score=18.63 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=14.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 027759 187 MWIQNMKIKLIVLGIIIALILIIV 210 (219)
Q Consensus 187 ~~~~~~k~~~ii~~vv~~~~~~i~ 210 (219)
..+++.|--+++++++++++...|
T Consensus 12 ll~~~l~~~i~~a~~ls~~~~~~~ 35 (73)
T PF02937_consen 12 LLAKRLKRHIVVAFVLSLGVAAAY 35 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666554443
Done!