Query 027759
Match_columns 219
No_of_seqs 154 out of 1008
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 01:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b93_A Vesicle-associated memb 100.0 2E-59 6.7E-64 370.0 4.1 189 3-193 1-189 (189)
2 2nut_C Vesicle-trafficking pro 100.0 1.5E-50 5E-55 321.6 12.4 184 5-191 2-196 (196)
3 3kyq_A YKT6, synaptobrevin hom 100.0 1.3E-38 4.4E-43 252.1 6.2 177 4-185 2-194 (199)
4 4afi_A AP-3 complex subunit de 100.0 4.2E-34 1.4E-38 221.1 14.8 120 3-123 53-172 (173)
5 3hd7_A Vesicle-associated memb 100.0 6E-32 2E-36 187.6 12.9 88 128-215 4-91 (91)
6 2vx8_A Nucleoporin-like protei 100.0 1.2E-29 4.1E-34 195.6 13.5 121 3-124 43-163 (169)
7 2kog_A Vesicle-associated memb 100.0 4.5E-31 1.5E-35 191.4 1.5 89 127-215 31-119 (119)
8 2nps_A VAMP-4, vesicle-associa 99.9 8.6E-26 2.9E-30 150.9 5.4 72 124-195 3-74 (74)
9 3bw6_A Synaptobrevin homolog Y 99.9 4.5E-24 1.5E-28 160.9 12.3 124 3-130 4-144 (144)
10 1sfc_A VAMP 2, protein (synapt 99.9 1.9E-24 6.6E-29 150.9 9.3 68 128-195 29-96 (96)
11 1l4a_A Synaptobrevin; snare, s 99.9 3E-25 1E-29 150.3 3.3 71 124-194 10-80 (80)
12 3b5n_A Synaptobrevin homolog 1 99.9 1.3E-21 4.3E-26 125.7 8.4 60 129-188 2-61 (61)
13 1n7s_A Vesicle-associated memb 99.9 1.3E-21 4.5E-26 126.6 8.4 61 128-188 3-63 (63)
14 1gl2_A Endobrevin; membrane pr 99.8 5.6E-20 1.9E-24 119.5 6.5 62 124-185 4-65 (65)
15 1urq_A M-tomosyn isoform; tran 99.7 2.5E-17 8.4E-22 105.5 7.2 59 129-187 4-62 (63)
16 3zym_A Phosphatidylinositol-bi 98.3 3.1E-07 1.1E-11 76.9 3.5 32 128-159 279-310 (310)
17 3fie_C Fragment of vesicle-ass 98.2 1.2E-09 4.1E-14 62.5 -9.1 30 128-157 8-37 (38)
18 3hd7_B Syntaxin-1A; membrane p 97.8 0.0015 5.1E-08 46.0 13.9 44 129-172 21-64 (109)
19 2fh5_A Signal recognition part 97.5 0.0003 1E-08 54.1 7.8 89 4-94 10-104 (185)
20 3hd7_A Vesicle-associated memb 95.0 0.48 1.6E-05 31.9 11.7 50 130-179 13-62 (91)
21 1w63_Q Adapter-related protein 90.9 2.6 8.9E-05 31.1 9.9 48 47-94 49-96 (158)
22 2vgl_S AP-2 complex subunit si 89.4 4.6 0.00016 29.1 10.2 47 47-93 49-95 (142)
23 2fz0_A R-snare NYV1P, V-snare 88.5 1.4 4.7E-05 31.7 6.2 87 1-87 1-114 (149)
24 3hd7_B Syntaxin-1A; membrane p 88.2 4.8 0.00016 27.8 12.0 7 143-149 48-54 (109)
25 1jth_B Syntaxin 1A; coiled-coi 88.2 3.7 0.00013 26.4 8.1 43 129-171 10-52 (77)
26 2kog_A Vesicle-associated memb 87.8 0.085 2.9E-06 37.5 -0.4 52 129-180 40-91 (119)
27 1w63_M Adaptor-related protein 87.0 3.7 0.00013 35.3 9.4 90 4-93 1-95 (423)
28 2vgl_M AP-2 complex subunit MU 82.1 23 0.0008 30.3 12.4 48 47-94 47-94 (435)
29 1n7s_A Vesicle-associated memb 80.9 7.5 0.00025 23.8 8.4 53 136-188 4-56 (63)
30 1sfc_A VAMP 2, protein (synapt 79.1 12 0.00041 25.1 9.3 52 136-187 30-81 (96)
31 2j3t_C Trafficking protein par 78.7 10 0.00034 27.5 7.6 86 33-121 46-137 (145)
32 3b5n_A Synaptobrevin homolog 1 78.4 9.1 0.00031 23.3 8.4 52 137-188 3-54 (61)
33 1rh5_B Preprotein translocase 77.7 1.7 5.7E-05 28.0 2.7 52 158-209 4-55 (74)
34 2nps_B Syntaxin 13, vesicle-as 77.3 11 0.00037 23.7 7.9 44 129-172 6-49 (71)
35 2ww9_B Protein transport prote 76.6 2.3 7.7E-05 27.8 3.1 44 165-208 24-67 (80)
36 3tjz_C Coatomer subunit zeta-1 76.4 20 0.00068 26.2 12.0 88 5-93 12-105 (153)
37 1t3j_A Mitofusin 1; coiled coi 74.3 17 0.00058 24.4 8.6 48 129-176 36-83 (96)
38 2j3w_A Sedlin, trafficking pro 71.0 26 0.00088 25.1 10.5 74 45-121 64-139 (142)
39 2j3t_D Trafficking protein par 68.1 40 0.0014 26.2 9.7 87 33-122 119-210 (219)
40 3b5n_B Protein SSO1; snare com 67.9 19 0.00065 22.4 9.0 44 129-172 10-53 (69)
41 1n7s_B Syntaxin 1A; neuronal s 65.7 21 0.00072 22.1 8.2 44 129-172 12-55 (68)
42 3cue_C Transport protein parti 65.5 36 0.0012 24.9 8.0 57 33-91 52-113 (159)
43 1ccd_A Clara cell 17 KD protei 64.8 12 0.00041 24.1 4.6 42 114-155 23-64 (77)
44 1utg_A Uteroglobin; steroid bi 63.7 11 0.00036 23.8 4.1 42 114-155 21-62 (70)
45 3cue_A Transport protein parti 62.2 38 0.0013 26.3 7.8 74 46-120 120-217 (219)
46 2wwb_B SEC61gamma, protein tra 61.8 1.3 4.3E-05 28.1 -0.6 48 161-208 6-53 (68)
47 2nps_A VAMP-4, vesicle-associa 60.6 27 0.00091 22.0 5.7 24 156-179 42-65 (74)
48 3lcn_C MRNA transport factor G 60.6 12 0.00041 19.0 3.0 22 127-148 4-25 (29)
49 1gl2_B Syntaxin 7; membrane pr 59.3 28 0.00095 21.3 8.1 44 129-172 9-52 (65)
50 2k1a_A Integrin alpha-IIB; sin 55.0 18 0.0006 20.4 3.6 16 201-217 21-36 (42)
51 2zxe_G FXYD10, phospholemman-l 54.0 20 0.0007 22.7 4.1 15 189-203 16-30 (74)
52 3mp7_B Preprotein translocase 53.5 6.3 0.00022 24.3 1.6 48 162-209 4-51 (61)
53 3j1r_A Archaeal adhesion filam 51.7 17 0.00057 18.1 2.7 16 196-211 10-25 (26)
54 1gl2_A Endobrevin; membrane pr 50.8 40 0.0014 20.6 7.2 52 136-187 9-60 (65)
55 4a4y_A Protein MXIG; protein b 50.8 29 0.00098 23.6 4.7 43 5-59 85-127 (146)
56 1urq_A M-tomosyn isoform; tran 50.5 41 0.0014 20.6 7.6 49 130-178 12-60 (63)
57 2ygg_A Sodium/hydrogen exchang 49.8 18 0.00063 22.7 3.3 23 135-157 6-28 (70)
58 1txp_A HnRNP C, heterogeneous 48.7 15 0.00051 18.6 2.3 24 133-160 3-26 (28)
59 1nhl_A Synaptosomal-associated 48.5 40 0.0014 19.8 6.8 40 133-172 4-43 (54)
60 1sfc_B Protein (syntaxin 1A), 47.4 54 0.0018 21.0 8.7 44 129-172 21-64 (83)
61 1l4a_A Synaptobrevin; snare, s 46.7 14 0.00046 23.9 2.5 51 129-179 22-72 (80)
62 1utr_A Uteroglobin; clara cell 46.6 17 0.00057 24.4 3.1 41 115-155 43-83 (96)
63 3h3g_B Parathyroid hormone-rel 45.9 13 0.00045 18.2 1.8 13 180-192 4-16 (24)
64 3fym_A Putative uncharacterize 43.8 4.8 0.00017 28.4 0.0 24 188-211 101-124 (130)
65 2ww9_B Protein transport prote 41.0 27 0.00091 22.7 3.2 50 154-203 6-58 (80)
66 3b5n_C Protein transport prote 40.6 66 0.0022 20.1 8.9 56 129-184 12-67 (70)
67 2knc_A Integrin alpha-IIB; tra 40.6 21 0.00071 21.3 2.5 16 200-215 22-37 (54)
68 2l8s_A Integrin alpha-1; trans 39.5 22 0.00077 21.2 2.5 15 201-215 20-34 (54)
69 1zkr_A Major allergen I polype 39.0 46 0.0016 24.3 4.5 43 114-156 22-65 (153)
70 2pjw_V Vacuolar protein sortin 38.7 84 0.0029 20.8 7.1 43 127-169 31-73 (91)
71 1f5n_A Interferon-induced guan 37.6 1E+02 0.0035 27.7 7.6 24 169-192 517-540 (592)
72 1l4a_C S-SNAP25 fusion protein 37.1 84 0.0029 20.3 6.8 45 128-172 26-70 (83)
73 1pi7_A VPU protein, U ORF prot 36.4 37 0.0013 18.4 2.9 16 196-211 7-22 (36)
74 1n7s_C SNAP-25A; neuronal snar 34.5 90 0.0031 19.9 8.1 45 128-172 22-66 (79)
75 3t97_C Nuclear pore glycoprote 33.8 63 0.0021 19.9 4.0 25 152-176 7-31 (64)
76 1dn1_B Syntaxin 1A, syntaxin b 33.8 32 0.0011 27.4 3.4 41 129-169 200-240 (267)
77 2jp3_A FXYD domain-containing 32.9 55 0.0019 20.3 3.5 14 189-202 14-27 (67)
78 3vmt_A Monofunctional glycosyl 32.5 22 0.00074 28.6 2.1 29 181-209 25-53 (263)
79 2oxj_A Hybrid alpha/beta pepti 30.8 64 0.0022 17.1 3.7 10 161-170 5-14 (34)
80 2klu_A T-cell surface glycopro 30.6 7.7 0.00026 24.2 -0.6 21 194-214 10-30 (70)
81 3f4m_A Tumor necrosis factor, 29.9 83 0.0028 23.2 4.8 76 70-157 85-160 (161)
82 2g0u_A Type III secretion syst 28.0 63 0.0021 21.5 3.4 11 81-91 17-27 (92)
83 2jo1_A Phospholemman; FXYD1, N 26.9 75 0.0026 19.9 3.4 11 190-200 14-24 (72)
84 3kf9_B MLCK2, myosin light cha 26.3 20 0.00067 17.1 0.5 8 186-193 2-9 (22)
85 3c3f_A Alpha/beta peptide with 24.2 89 0.003 16.5 3.7 7 163-169 7-13 (34)
86 1spf_A Pulmonary surfactant-as 23.4 91 0.0031 16.3 3.6 18 193-210 11-28 (35)
87 2kfe_A Meucin-24; alpha-helix, 22.8 45 0.0015 16.6 1.5 18 130-147 6-23 (26)
88 2jwa_A Receptor tyrosine-prote 22.2 37 0.0013 19.3 1.3 7 197-203 14-20 (44)
89 1iij_A ERBB-2 receptor protein 21.2 87 0.003 16.8 2.6 16 194-209 7-22 (35)
90 3ghg_A Fibrinogen alpha chain; 20.9 2E+02 0.0067 25.5 6.1 70 113-187 50-119 (562)
91 3rkg_A Magnesium transporter M 20.5 3.2E+02 0.011 21.6 8.9 37 79-121 103-139 (261)
92 3n2f_G Na+/K+ ATPase gamma sub 20.4 79 0.0027 16.4 2.2 11 189-199 7-17 (31)
No 1
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=100.00 E-value=2e-59 Score=369.99 Aligned_cols=189 Identities=35% Similarity=0.622 Sum_probs=149.7
Q ss_pred CcceEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCcccchHHHHH
Q 027759 3 QQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFL 82 (219)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~af~fL 82 (219)
.|+|+|||||||++|||||+..+|||..+++++|+++|+.++|.+++.++|.|||+.++|++|+|+||.+||+++||.||
T Consensus 1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL 80 (189)
T 4b93_A 1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 80 (189)
T ss_dssp CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence 38999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHH
Q 027759 83 ERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELL 162 (219)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l 162 (219)
++|+++|.+.|+ ..+.++.|++++.+|++.|++.|++|+ +|.+.|++.+++++|+||++||.+||+++|+|||+||.|
T Consensus 81 ~~i~~eF~~~~~-~~~~~~~~~~~~~~f~~~l~~~~~~y~-d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L 158 (189)
T 4b93_A 81 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHS-ENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELL 158 (189)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHH-CC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCC
T ss_pred HHHHHHHHhhcc-ccccccCCccccchhhHHHHHHHHhhh-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 999999999995 456677788888999999999999994 666679999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHhHHHHHHHHHHHHhH
Q 027759 163 VDKTENLRSQAQDFRQQGTKMRRKMWIQNMK 193 (219)
Q Consensus 163 ~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k 193 (219)
++||++|+.+|..|+++|++|+|+|||+|+|
T Consensus 159 ~~ks~~L~~~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 159 IDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp EETTCC-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999987
No 2
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=100.00 E-value=1.5e-50 Score=321.58 Aligned_cols=184 Identities=25% Similarity=0.437 Sum_probs=115.7
Q ss_pred ceEEEEEEeC--CeEEEeecCCC---CC----HHHHHHHHhccCCC-CCCeeEEEECCeEEEEEeeCCEEEEEEecCCcc
Q 027759 5 SLIYSFVARG--TVILAEYTEFT---GN----FTSIASQCLQKLPA-TNNKFTYNCDGHTFNYLVENGFTYCVVAVESAG 74 (219)
Q Consensus 5 ~i~Ya~Iar~--~~iLae~~~~~---~~----~~~ia~~il~ki~~-~~~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~ 74 (219)
||+|+||||+ ++|||+|++.+ ++ |..+++.+++++|+ .++|.+++.++|.|||+.++|++|+||||++||
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp 81 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP 81 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence 4999999999 79999998643 33 88999999999997 568999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCccc-cccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHH
Q 027759 75 RQIPIAFLERVKEDFNKRYGGGKAAT-AVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVL 153 (219)
Q Consensus 75 ~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl 153 (219)
+++||.||++|+++|...|+. .+.. +.|+++ .+|++.|+++|++| ++|.+.|++.+++++|+||++||.+||+++|
T Consensus 82 ~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~-~~f~~~l~~~~~~y-~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl 158 (196)
T 2nut_C 82 KKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSF-IEFDTFIQKTKKLY-IDSRARRNLGSINTELQDVQRIMVANIEEVL 158 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTT-GGGHHHHHHHHTTT-SCCC-----------------CCEEEHHHHC
T ss_pred hHHHHHHHHHHHHHHHHhccc-hhccccCCCch-HHHHHHHHHHHHHh-cCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999964 4433 578898 49999999999999 6787779999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 027759 154 DRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQN 191 (219)
Q Consensus 154 ~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~ 191 (219)
+|||+||.|++||++|+.+|..|+++|++++|+|||++
T Consensus 159 ~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 159 QRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp --------------------------------------
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999985
No 3
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-38 Score=252.12 Aligned_cols=177 Identities=20% Similarity=0.334 Sum_probs=148.7
Q ss_pred cceEEEEEEeC--C--eEEEeecCCC----------CCHHH-HHHHHhccCCCCCCeeEEEECCeEEE-EEeeCCEEEEE
Q 027759 4 QSLIYSFVARG--T--VILAEYTEFT----------GNFTS-IASQCLQKLPATNNKFTYNCDGHTFN-YLVENGFTYCV 67 (219)
Q Consensus 4 ~~i~Ya~Iar~--~--~iLae~~~~~----------~~~~~-ia~~il~ki~~~~~k~~~~~~~~~~~-~l~~~~~~~~~ 67 (219)
|.|++..|.+. + .+|+...+.+ ++|.. +++.+++++|++ +|.+++.++|.|| |+.++|++|+|
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~-~r~s~~~~~y~fH~y~~~~gl~yl~ 80 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKG-SRASVKEQEYLCHVYVRSDSLAGVV 80 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTT-EEEEEECSSEEEEEEECTTSEEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCC-CeEEEEeCCEEEEEEEecCCEEEEE
Confidence 66888888873 2 4566433221 34544 567999999885 7999999999999 89999999999
Q ss_pred EecCCcccchHHHHHHHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHH
Q 027759 68 VAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMME 147 (219)
Q Consensus 68 vtd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~ 147 (219)
+||++||+++||.||++|+++|.+.|+...|....+.+. .| +.|+++|++| +||.+.|++.+++++|+||++||.+
T Consensus 81 itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~--~f-~~l~~~m~~Y-~dp~~~d~l~~~q~el~evk~iM~~ 156 (199)
T 3kyq_A 81 IADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATI--HY-TALDGHLSRY-QNPREADPMSKVQAELDETKIILHN 156 (199)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTC--CC-CTHHHHHHHT-TSGGGCCCCHHHHHHHHTCCCEEES
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccc--cc-HHHHHHHHHh-CCchhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997555543222222 35 6788999889 6788889999999999999999999
Q ss_pred hHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Q 027759 148 NIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRR 185 (219)
Q Consensus 148 Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~ 185 (219)
||+++|+|||+||+|++||++|+.+|..|+++|+++++
T Consensus 157 NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 157 TMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp SGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999986
No 4
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.2e-34 Score=221.13 Aligned_cols=120 Identities=33% Similarity=0.582 Sum_probs=114.7
Q ss_pred CcceEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCcccchHHHHH
Q 027759 3 QQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFL 82 (219)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~af~fL 82 (219)
.|+|+|||||||++|||||+..+|||..+++++|+++|+.++|.+++.++|.|||++++|++|+|+||++||+++||.||
T Consensus 53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL 132 (173)
T 4afi_A 53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 132 (173)
T ss_dssp CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence 68899999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcC
Q 027759 83 ERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVD 123 (219)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~ 123 (219)
++|+++|.+.|+ ..+.++.||+++.+|++.|++.|++||+
T Consensus 133 edI~~eF~~~yg-~~~~ta~pya~~~eF~~~L~~~M~~yn~ 172 (173)
T 4afi_A 133 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSE 172 (173)
T ss_dssp HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-hhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence 999999999995 5678889999999999999999999964
No 5
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.98 E-value=6e-32 Score=187.63 Aligned_cols=88 Identities=32% Similarity=0.587 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALIL 207 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~ 207 (219)
.|++.+++++++||+++|.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++++++++++++++
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~iii~~iv~~il~ 83 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILI 83 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q 027759 208 IIVLSVCH 215 (219)
Q Consensus 208 ~i~~~~C~ 215 (219)
+|++++|.
T Consensus 84 ii~~~~~~ 91 (91)
T 3hd7_A 84 IIIVYFST 91 (91)
T ss_dssp HHHHTTCC
T ss_pred HHHHHHhC
Confidence 99999993
No 6
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=99.96 E-value=1.2e-29 Score=195.56 Aligned_cols=121 Identities=32% Similarity=0.578 Sum_probs=107.9
Q ss_pred CcceEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCcccchHHHHH
Q 027759 3 QQSLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFL 82 (219)
Q Consensus 3 ~~~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~af~fL 82 (219)
+|+|+|++|+||++||+||++.++||..+++.+++++++.++|.+++.++|.|||+.+||++|+||||++||+++||.||
T Consensus 43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL 122 (169)
T 2vx8_A 43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL 122 (169)
T ss_dssp SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence 58999999999999999999999999999999999999977899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcCC
Q 027759 83 ERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDH 124 (219)
Q Consensus 83 ~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~ 124 (219)
++|+++|.+.|+ ..+..+.+++++.+|++.|++.+++|+++
T Consensus 123 edI~~eF~~~y~-~~~~~a~pysf~~eF~~~Lk~~~~~~~~~ 163 (169)
T 2vx8_A 123 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSEN 163 (169)
T ss_dssp HHHHHHHHHHHT-TGGGTCCTTTTHHHHHHHHSCC-------
T ss_pred HHHHHHHHHHhh-hhhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence 999999999996 45666678999889999999999999643
No 7
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.96 E-value=4.5e-31 Score=191.43 Aligned_cols=89 Identities=31% Similarity=0.561 Sum_probs=86.2
Q ss_pred hhhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 027759 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALI 206 (219)
Q Consensus 127 ~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~ 206 (219)
+.|++.+++++++||+++|.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|+++++++++++++
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii 110 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 110 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcC
Q 027759 207 LIIVLSVCH 215 (219)
Q Consensus 207 ~~i~~~~C~ 215 (219)
++|++++|.
T Consensus 111 ~iIi~~~c~ 119 (119)
T 2kog_A 111 IIIIVYFST 119 (119)
T ss_dssp HHHHHHHHC
T ss_pred HHhhhheeC
Confidence 999999993
No 8
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.92 E-value=8.6e-26 Score=150.87 Aligned_cols=72 Identities=42% Similarity=0.666 Sum_probs=62.2
Q ss_pred CchhhhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 027759 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIK 195 (219)
Q Consensus 124 ~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~ 195 (219)
+|.+.|++.+++.+|+||++||.+||+++|+|||+||.|+++|++|+.+|..|+++|++++|+|||+|+|++
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 466679999999999999999999999999999999999999999999999999999999999999999974
No 9
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=99.91 E-value=4.5e-24 Score=160.86 Aligned_cols=124 Identities=13% Similarity=0.160 Sum_probs=99.5
Q ss_pred CcceEEEEEEeC----CeEEEeecCCC----------CCH-HHHHHHHhccCCCCCCeeEEEECCeEEEEE-eeCCEEEE
Q 027759 3 QQSLIYSFVARG----TVILAEYTEFT----------GNF-TSIASQCLQKLPATNNKFTYNCDGHTFNYL-VENGFTYC 66 (219)
Q Consensus 3 ~~~i~Ya~Iar~----~~iLae~~~~~----------~~~-~~ia~~il~ki~~~~~k~~~~~~~~~~~~l-~~~~~~~~ 66 (219)
.|.|+|.+|+|+ .++|+++++.+ ++| ..+++++++|+|++ +|.+++.++|.|||+ .++|++|+
T Consensus 4 ~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~-~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 4 AMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG-QRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT-EEEEEEETTEEEEEEECTTSEEEE
T ss_pred EEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC-ceEEEEeCCEEEEEEEecCCEEEE
Confidence 477889889998 68999987765 555 77899999999986 799999999999999 78999999
Q ss_pred EEecCCcccchHHHHHHHHHHHHhhhcCCCCccc-cccccchHHHhHHHHHhchhhcCCchhhhH
Q 027759 67 VVAVESAGRQIPIAFLERVKEDFNKRYGGGKAAT-AVANSLNKEFGSKLKEHMQYCVDHPEEISK 130 (219)
Q Consensus 67 ~vtd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~~~~~~~~~dk 130 (219)
|+||++||+++||.||++|+++|.+.|+...|.+ ..+++ +..| +.|++.|++| +||.+.||
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~-~~~f-~~l~~~i~kY-qdp~~aD~ 144 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETND-ALKM-KQLDTYISKY-QDPSQADA 144 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCG-GGCC-THHHHHHHHT-SCC-----
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccC-Ccch-HHHHHHHHHh-CchhhcCC
Confidence 9999999999999999999999999996543655 33111 2344 7888888889 78877674
No 10
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.91 E-value=1.9e-24 Score=150.90 Aligned_cols=68 Identities=35% Similarity=0.628 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIK 195 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~ 195 (219)
.|++.+++.+|+||++||.+||+++|+|||+||.|++||++|+.+|..|+++|++++|+|||+|+|++
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 49999999999999999999999999999999999999999999999999999999999999999974
No 11
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.90 E-value=3e-25 Score=150.32 Aligned_cols=71 Identities=35% Similarity=0.596 Sum_probs=62.5
Q ss_pred CchhhhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHH
Q 027759 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKI 194 (219)
Q Consensus 124 ~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~ 194 (219)
+|.+.|++.+++.+|+||++||.+||+++|+|||+||.|+++|++|+.+|..|+++|++++|+|||+|+|+
T Consensus 10 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 10 PVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC------
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45556999999999999999999999999999999999999999999999999999999999999999985
No 12
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.86 E-value=1.3e-21 Score=125.74 Aligned_cols=60 Identities=37% Similarity=0.744 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMW 188 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 188 (219)
|++.+++.+|+||++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++++|+||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 799999999999999999999999999999999999999999999999999999999999
No 13
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.86 E-value=1.3e-21 Score=126.61 Aligned_cols=61 Identities=36% Similarity=0.642 Sum_probs=59.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMW 188 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 188 (219)
.|++.+++.++++|++||.+||+++|+|||+|+.|+++|++|+.+|..|+++|++++|+||
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3999999999999999999999999999999999999999999999999999999999998
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.80 E-value=5.6e-20 Score=119.46 Aligned_cols=62 Identities=29% Similarity=0.580 Sum_probs=52.7
Q ss_pred CchhhhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHH
Q 027759 124 HPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRR 185 (219)
Q Consensus 124 ~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~ 185 (219)
+|.+.|++.+++.+|+||++||.+||+++|+|||+|+.|++||++|+.+|..|+++|++|+|
T Consensus 4 ~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 4 MSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45566999999999999999999999999999999999999999999999999999999986
No 15
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.71 E-value=2.5e-17 Score=105.51 Aligned_cols=59 Identities=25% Similarity=0.337 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKM 187 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (219)
.++..++.++++|+++|.+|++++++|||+|+.|+++|++|.++|..|.+.|++|++++
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999875
No 16
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.29 E-value=3.1e-07 Score=76.94 Aligned_cols=32 Identities=31% Similarity=0.735 Sum_probs=23.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L 159 (219)
.|++.++|++++||++||.+|||++|+|||+|
T Consensus 279 ~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 48999999999999999999999999999986
No 17
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.20 E-value=1.2e-09 Score=62.50 Aligned_cols=30 Identities=40% Similarity=0.550 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGE 157 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge 157 (219)
.|++.+++.+|+||++||.+||+++|+||+
T Consensus 8 ~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 8 NRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 388999999999999999999999999996
No 18
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.78 E-value=0.0015 Score=46.04 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
+.+.++++.+.|+.+++.+=-..+-+.|+.+|.++...++-..+
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~ 64 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 64 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 67889999999999999888888899999999998877766543
No 19
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=97.54 E-value=0.0003 Score=54.08 Aligned_cols=89 Identities=12% Similarity=0.260 Sum_probs=64.2
Q ss_pred cceEEEEEEeCCeEEEeecCCC----CCHHHHHHHHhccCCCCCCeeEEEECCeEEEEEeeC--CEEEEEEecCCcccch
Q 027759 4 QSLIYSFVARGTVILAEYTEFT----GNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVEN--GFTYCVVAVESAGRQI 77 (219)
Q Consensus 4 ~~i~Ya~Iar~~~iLae~~~~~----~~~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~--~~~~~~vtd~~~~~~~ 77 (219)
|.=+++.+.+|+.||..|+... ...+.+++.++-.=..+ ..++++++|...+..++ +++|++|-..-.+-..
T Consensus 10 ~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~~--~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Y 87 (185)
T 2fh5_A 10 MVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGG--NNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY 87 (185)
T ss_dssp SCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred ceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccccC--CCceeEcCeEEEEEEeccCCEEEEEEEcccccchH
Confidence 3346788999999999985332 23566777766332222 23688899999988765 7999999888777777
Q ss_pred HHHHHHHHHHHHhhhcC
Q 027759 78 PIAFLERVKEDFNKRYG 94 (219)
Q Consensus 78 af~fL~~i~~~f~~~~~ 94 (219)
+=.||+.++..|...|.
T Consensus 88 iD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 88 VDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899999999999884
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=95.02 E-value=0.48 Score=31.87 Aligned_cols=50 Identities=10% Similarity=0.206 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHh
Q 027759 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQ 179 (219)
Q Consensus 130 kl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~ 179 (219)
.++.++.-+.+.-+-+.++=+++=+=.++-++|.+.|.....+|...++.
T Consensus 13 ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 13 QVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333333333445555666667777776666553
No 21
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=90.93 E-value=2.6 Score=31.10 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=41.7
Q ss_pred EEEECCeEEEEEeeCCEEEEEEecCCcccchHHHHHHHHHHHHhhhcC
Q 027759 47 TYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYG 94 (219)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~af~fL~~i~~~f~~~~~ 94 (219)
.++.+++.|.|..-+++.|+++++.+.+.-..+.||..+.+.+..-++
T Consensus 49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~ 96 (158)
T 1w63_Q 49 FLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG 96 (158)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred eEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 567789999898889999999999999999999999998888777663
No 22
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=89.42 E-value=4.6 Score=29.06 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=41.2
Q ss_pred EEEECCeEEEEEeeCCEEEEEEecCCcccchHHHHHHHHHHHHhhhc
Q 027759 47 TYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRY 93 (219)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~af~fL~~i~~~f~~~~ 93 (219)
.++.+++.|.|..-+++.|+++++.+.+.-..+.||..+.+.+..-+
T Consensus 49 ~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf 95 (142)
T 2vgl_S 49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYF 95 (142)
T ss_dssp EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 56788999989888999999999999999999999999888887666
No 23
>2fz0_A R-snare NYV1P, V-snare component of the vacuolar snare complex involved in vesicle fusion; inhibits...; snare protein, longin domain; NMR {Saccharomyces cerevisiae}
Probab=88.52 E-value=1.4 Score=31.72 Aligned_cols=87 Identities=20% Similarity=0.309 Sum_probs=56.1
Q ss_pred CCCcceEEEEEEeCCeEEEe-e-cC-C--------CC-------CHHHHH-HHHhccCCCC-CCee---EEE-ECCeEEE
Q 027759 1 MGQQSLIYSFVARGTVILAE-Y-TE-F--------TG-------NFTSIA-SQCLQKLPAT-NNKF---TYN-CDGHTFN 56 (219)
Q Consensus 1 ~~~~~i~Ya~Iar~~~iLae-~-~~-~--------~~-------~~~~ia-~~il~ki~~~-~~k~---~~~-~~~~~~~ 56 (219)
|.+-.+.|.=|..++..++. | .. . .+ -|..++ ..++.++-+- ..|. +.. .+||-.+
T Consensus 1 MK~fnvSYvEvi~~g~~~sscy~~~~~~s~YGs~~~~~~~~tp~~Fh~Li~dmViPkVV~v~GNKVTKmS~~LIDGyDCY 80 (149)
T 2fz0_A 1 MKRFNVSYVEVIKNGETISSCFQPFQKNENYGTITSANEQITPVIFHNLIMDMVLPKVVPIKGNKVTKMSMNLIDGFDCF 80 (149)
T ss_dssp CCCCCCSEEEEEESSSCCCEEECCCSSSSSCSCCSSTTSSCCHHHHHHHHHHTTGGGCCCCSSCSSEECCSCCSSSEEEE
T ss_pred CCccceEEEEEEeCCeeEEEEeeccCCCcccccccccccccCHHHHHHHHHheecceEEecCCCeEEEEeeeccccceee
Confidence 55545677766666544443 3 11 0 11 155544 3345665443 2343 333 4899888
Q ss_pred EEe---eCCEEEEEEecCCcccchHHHHHHHHHH
Q 027759 57 YLV---ENGFTYCVVAVESAGRQIPIAFLERVKE 87 (219)
Q Consensus 57 ~l~---~~~~~~~~vtd~~~~~~~af~fL~~i~~ 87 (219)
|.. +++.+|+|.+..+.|+-++...|.++++
T Consensus 81 YtT~~~~~~~VlVCFt~~dvPKILPiRlLSeLk~ 114 (149)
T 2fz0_A 81 YSTDDHDPKTVYVCFTLVDIPKILPIRILSGLQE 114 (149)
T ss_dssp ECCCSSCTTEEEEEEEETTSCSSHHHHHHHHHTT
T ss_pred eeccCCCCCeEEEEEEecCCcccccHHHHhhhcc
Confidence 876 3578999999999999999999999976
No 24
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=88.21 E-value=4.8 Score=27.76 Aligned_cols=7 Identities=43% Similarity=0.881 Sum_probs=2.7
Q ss_pred HHHHHhH
Q 027759 143 GVMMENI 149 (219)
Q Consensus 143 ~im~~Ni 149 (219)
+-|.++|
T Consensus 48 ge~Id~I 54 (109)
T 3hd7_B 48 GEMIDRI 54 (109)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333444
No 25
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=88.17 E-value=3.7 Score=26.38 Aligned_cols=43 Identities=21% Similarity=0.315 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRS 171 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~ 171 (219)
+.+.++++.+.|+.+++.+=-..+.+.|+-||.++...++-..
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 52 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVD 52 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 6688999999999999998888899999999998877666554
No 26
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=87.83 E-value=0.085 Score=37.53 Aligned_cols=52 Identities=10% Similarity=0.180 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 180 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a 180 (219)
+++..++..+.+.-+.+.+.=+++=+=.++-+.|.+.|.....+|...+++.
T Consensus 40 ~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkm 91 (119)
T 2kog_A 40 AQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 91 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556555555555555444444445555566677788888887776643
No 27
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=86.99 E-value=3.7 Score=35.30 Aligned_cols=90 Identities=13% Similarity=0.156 Sum_probs=58.9
Q ss_pred cceEEEEEEeC-CeE-EEe-ecC-CCCC-HHHHHHHHhccCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCcccchH
Q 027759 4 QSLIYSFVARG-TVI-LAE-YTE-FTGN-FTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIP 78 (219)
Q Consensus 4 ~~i~Ya~Iar~-~~i-Lae-~~~-~~~~-~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~a 78 (219)
|||...+|... +.+ |+- |.. ...+ .+..-+.++.+......--.++.+++.|.|..-+++.|+|+++.+...-..
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 56777777653 344 443 432 2222 333334444332211112356788999999888999999999999998899
Q ss_pred HHHHHHHHHHHhhhc
Q 027759 79 IAFLERVKEDFNKRY 93 (219)
Q Consensus 79 f~fL~~i~~~f~~~~ 93 (219)
+.||..+.+.+..-+
T Consensus 81 le~L~~~v~~l~~yf 95 (423)
T 1w63_M 81 FSFLYKVVQVFSEYF 95 (423)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988887766
No 28
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=82.07 E-value=23 Score=30.31 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=42.0
Q ss_pred EEEECCeEEEEEeeCCEEEEEEecCCcccchHHHHHHHHHHHHhhhcC
Q 027759 47 TYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYG 94 (219)
Q Consensus 47 ~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~af~fL~~i~~~f~~~~~ 94 (219)
.++.+++.|.|..-+++.|+|+++.+...-..+.||..+.+.+..-++
T Consensus 47 ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 47 VTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 567899999998889999999999999988999999998888777663
No 29
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=80.95 E-value=7.5 Score=23.84 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=34.9
Q ss_pred HHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHH
Q 027759 136 AQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMW 188 (219)
Q Consensus 136 ~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 188 (219)
+.+..++.-+.+..+-+.++-+++-.=-++-+.|.+.|..+...|...++..-
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~ 56 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAA 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666677777777777777766554
No 30
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=79.14 E-value=12 Score=25.14 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=28.2
Q ss_pred HHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 027759 136 AQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKM 187 (219)
Q Consensus 136 ~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (219)
..+..++.-+.+..+-+.++-+++-.=-++-+.|.+.|..+...|...++..
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A 81 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSA 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555444
No 31
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=78.66 E-value=10 Score=27.50 Aligned_cols=86 Identities=9% Similarity=0.118 Sum_probs=53.3
Q ss_pred HHHhccCCCC---CCeeEEEECCeEEEEE-eeCCEEEEEEecCCcccchHHHHHHHHH-HHHhhhcCCCCccc-cccccc
Q 027759 33 SQCLQKLPAT---NNKFTYNCDGHTFNYL-VENGFTYCVVAVESAGRQIPIAFLERVK-EDFNKRYGGGKAAT-AVANSL 106 (219)
Q Consensus 33 ~~il~ki~~~---~~k~~~~~~~~~~~~l-~~~~~~~~~vtd~~~~~~~af~fL~~i~-~~f~~~~~~~~~~~-~~~~~~ 106 (219)
..+.+++.|. ..-.+++.++|..|+. ...|+=|+.++|+..+ -.-.||.+|. +.|......+..-. ..|-.
T Consensus 46 ~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~- 122 (145)
T 2j3t_C 46 RSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVG--PIRDVLHHIYSALYVEFVVKNPLCPLGQTVQ- 122 (145)
T ss_dssp HHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSCEEEEEECTTCC--CCHHHHHHHHHTTHHHHTTTCTTSCTTSCCC-
T ss_pred HHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCCEEEEEecCCcc--hHHHHHHHHHHHHHHHHHhcCCCCCCCCcee-
Confidence 4455666554 2345677788877754 5579999999998755 4668899999 56655332121111 11111
Q ss_pred hHHHhHHHHHhchhh
Q 027759 107 NKEFGSKLKEHMQYC 121 (219)
Q Consensus 107 ~~~f~~~l~~~~~~~ 121 (219)
+..|+..++.+++.+
T Consensus 123 s~~Fd~~v~~~~~~~ 137 (145)
T 2j3t_C 123 SELFRSRLDSYVRSL 137 (145)
T ss_dssp CHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHhC
Confidence 256888888887653
No 32
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=78.37 E-value=9.1 Score=23.31 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=31.7
Q ss_pred HHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHH
Q 027759 137 QVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMW 188 (219)
Q Consensus 137 ~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~ 188 (219)
++..++.-+.+-.+-+.++-+++-.=-++-+.|.+.|..+...|...++..-
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~ 54 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGAN 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555666666677777777766665554
No 33
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=77.74 E-value=1.7 Score=28.01 Aligned_cols=52 Identities=8% Similarity=0.138 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027759 158 KIELLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 158 ~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~i 209 (219)
+++.+.+...+.-.++..|-+.++|=.|+-+++-.|...+..+++-++-|+|
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiI 55 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYII 55 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666677777777777778888888877766555554444444
No 34
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=77.26 E-value=11 Score=23.65 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
+.+.++++.+.++.+++.+=-..+-+.|+-||.++...++-...
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 49 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVH 49 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 56889999999999999988888899999999998877666544
No 35
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=76.60 E-value=2.3 Score=27.80 Aligned_cols=44 Identities=11% Similarity=-0.012 Sum_probs=26.6
Q ss_pred HhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027759 165 KTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 165 ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~ 208 (219)
...+.-.++.+|-+.++|=.|+-+++-.|...+..+++-++-|+
T Consensus 24 ~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 24 APVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp HHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556666666666777877777776655555554444
No 36
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=76.35 E-value=20 Score=26.16 Aligned_cols=88 Identities=11% Similarity=0.182 Sum_probs=59.8
Q ss_pred ceEEEEEEe--CCeEEEee-cCCCCCH---HHHHHHHhccCCCCCCeeEEEECCeEEEEEeeCCEEEEEEecCCcccchH
Q 027759 5 SLIYSFVAR--GTVILAEY-TEFTGNF---TSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIP 78 (219)
Q Consensus 5 ~i~Ya~Iar--~~~iLae~-~~~~~~~---~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~~~~~~~~~vtd~~~~~~~a 78 (219)
||.+.+|-. |.++|+-| ...-.+. ..+.+.+.+++...+. -....+++.+.|..-.++.|+++++.+...-..
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~i 90 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELML 90 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHHH
T ss_pred HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHHH
Confidence 466666665 45777765 3211121 2222333333332222 356789999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 027759 79 IAFLERVKEDFNKRY 93 (219)
Q Consensus 79 f~fL~~i~~~f~~~~ 93 (219)
+.||..+.+.+..-+
T Consensus 91 le~L~~~ve~l~~yf 105 (153)
T 3tjz_C 91 MTVLNCLFDSLSQML 105 (153)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988887766
No 37
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=74.33 E-value=17 Score=24.45 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDF 176 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f 176 (219)
.-...+...|++++.-|.+-|+.+-.+=..||.+..++..|...|..+
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L 83 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQL 83 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345688999999999999999888888888887777776666655544
No 38
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=70.99 E-value=26 Score=25.08 Aligned_cols=74 Identities=8% Similarity=-0.011 Sum_probs=46.2
Q ss_pred eeEEEECCeEEE-EEeeCCEEEEEEecCCcccchHHHHHHHHHHHHhhhcCCCCccc-cccccchHHHhHHHHHhchhh
Q 027759 45 KFTYNCDGHTFN-YLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAAT-AVANSLNKEFGSKLKEHMQYC 121 (219)
Q Consensus 45 k~~~~~~~~~~~-~l~~~~~~~~~vtd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~~~~f~~~l~~~~~~~ 121 (219)
..+...+++..| |....|+=|+.++|+. .....-.||.+|.+.|..... +..-. ..|-. ...|+..++++++.|
T Consensus 64 ~~~~~~~~y~v~~~~T~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~-NPfy~~~~pI~-s~~Fd~~v~~~~~~~ 139 (142)
T 2j3w_A 64 KTVDKFNEWFVSAFVTAGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIR-SSAFDRKVQFLGKKH 139 (142)
T ss_dssp EEEEEETTEEEEEEECTTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHH-STTCCTTCCCC-CHHHHHHHHHHHHHH
T ss_pred EeeecccceEEEEEEcCCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhc-CCCCCCCCcee-cHHHHHHHHHHHHHh
Confidence 345556777666 4556799999999974 233567889999988766442 21111 01111 256888888887655
No 39
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=68.12 E-value=40 Score=26.19 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=55.0
Q ss_pred HHHhccCCCCC---CeeEEEECCeEEEEE-eeCCEEEEEEecCCcccchHHHHHHHHHHHHhhhcCCCCccc-cccccch
Q 027759 33 SQCLQKLPATN---NKFTYNCDGHTFNYL-VENGFTYCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAAT-AVANSLN 107 (219)
Q Consensus 33 ~~il~ki~~~~---~k~~~~~~~~~~~~l-~~~~~~~~~vtd~~~~~~~af~fL~~i~~~f~~~~~~~~~~~-~~~~~~~ 107 (219)
..+.+++.|.+ .-.+++.+.|..|+. ...|+-|+.++|+. ....-.||.+|.+.|......+..-. ..|-. +
T Consensus 119 d~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~--~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~-s 195 (219)
T 2j3t_D 119 FAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPR--QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIR-C 195 (219)
T ss_dssp HHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTT--CCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCC-C
T ss_pred HHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCC--chHHHHHHHHHHHHHHHHhccCCCCCCCCccc-h
Confidence 34456666542 234677888877754 55799999999986 44677889999987766432121111 11111 2
Q ss_pred HHHhHHHHHhchhhc
Q 027759 108 KEFGSKLKEHMQYCV 122 (219)
Q Consensus 108 ~~f~~~l~~~~~~~~ 122 (219)
..|+..++++++.+.
T Consensus 196 ~~Fd~~v~~l~~~~~ 210 (219)
T 2j3t_D 196 ELFDQNLKLALEVAE 210 (219)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 568888888887663
No 40
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=67.86 E-value=19 Score=22.36 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
+.+.++++.+.++.+++.+=-..+.+.|+-||.++...++-...
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 53 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLD 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 67889999999999999998888999999999999777766554
No 41
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=65.66 E-value=21 Score=22.05 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
+.+.++++.+.++.+++.+=-..+.+.|+.||.++...++-...
T Consensus 12 ~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 55 (68)
T 1n7s_B 12 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 55 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 67889999999999999988888999999999998776665544
No 42
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=65.54 E-value=36 Score=24.94 Aligned_cols=57 Identities=11% Similarity=0.067 Sum_probs=40.2
Q ss_pred HHHhccCCCCC---CeeEEEECCeEEEEE-eeCCEEEEEEecCCcccchHHHHHHHHHH-HHhh
Q 027759 33 SQCLQKLPATN---NKFTYNCDGHTFNYL-VENGFTYCVVAVESAGRQIPIAFLERVKE-DFNK 91 (219)
Q Consensus 33 ~~il~ki~~~~---~k~~~~~~~~~~~~l-~~~~~~~~~vtd~~~~~~~af~fL~~i~~-~f~~ 91 (219)
+.+.+++.|.+ .-..++.+.|..|+. ...|+=|++++|+..+ -.-.+|.+|.+ .|..
T Consensus 52 ~~i~~kls~~~~~~~f~~~~T~~ykl~~~eT~TgiKFvl~td~~~~--~i~~~l~~iy~~lYv~ 113 (159)
T 3cue_C 52 RSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQ--SYTQVLQYIYSHIYVK 113 (159)
T ss_dssp HHHHHHSCCSSSCCCEEEEECSSCBEEEECCSSCCEEEEECCSSSS--CTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCeEEEeeCCEEEEEEEeCCCCEEEEEeCCCcc--hHHHHHHHHHHHHHHH
Confidence 55567776653 334566688877655 4579999999998744 55677999987 6655
No 43
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=64.75 E-value=12 Score=24.07 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=33.0
Q ss_pred HHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhh
Q 027759 114 LKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (219)
Q Consensus 114 l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~R 155 (219)
....++.|+.+|+..+...++++-++....--+.|+.++|++
T Consensus 23 Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 23 YEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445667787788877888899998888888888888877765
No 44
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=63.65 E-value=11 Score=23.81 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=32.7
Q ss_pred HHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhh
Q 027759 114 LKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (219)
Q Consensus 114 l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~R 155 (219)
....++.|+.+|+..+...++++=++....-=+.|+.++|++
T Consensus 21 Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 21 YETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566787788777888899988888888888888887765
No 45
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=62.25 E-value=38 Score=26.35 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=43.6
Q ss_pred eEEEECCeEEEE-EeeCCEEEEEEecCCccc----------------------chHHHHHHHHHHHHhhhcCCCCc-ccc
Q 027759 46 FTYNCDGHTFNY-LVENGFTYCVVAVESAGR----------------------QIPIAFLERVKEDFNKRYGGGKA-ATA 101 (219)
Q Consensus 46 ~~~~~~~~~~~~-l~~~~~~~~~vtd~~~~~----------------------~~af~fL~~i~~~f~~~~~~~~~-~~~ 101 (219)
..+..+.+..|+ ....|+=|++++|+..+. ...-.||.+|.+.|.+....+.. ...
T Consensus 120 ~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~ 199 (219)
T 3cue_A 120 RQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSME 199 (219)
T ss_dssp CEEEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTT
T ss_pred EEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 456667776664 456799999999987633 44678899988877663311110 000
Q ss_pred ccccchHHHhHHHHHhchh
Q 027759 102 VANSLNKEFGSKLKEHMQY 120 (219)
Q Consensus 102 ~~~~~~~~f~~~l~~~~~~ 120 (219)
.+-. ...|+..++.+++.
T Consensus 200 ~pI~-S~~Fd~~V~~~~~~ 217 (219)
T 3cue_A 200 MPIR-SNLFDEKVKKMVEN 217 (219)
T ss_dssp SCCC-CHHHHHHHHHHHHH
T ss_pred Cccc-cHHHHHHHHHHHHh
Confidence 0100 14577777766654
No 46
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=61.79 E-value=1.3 Score=28.10 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=28.9
Q ss_pred HHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 027759 161 LLVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALILI 208 (219)
Q Consensus 161 ~l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~ 208 (219)
.+.+...+.-.++.+|-+.++|=.|+-+++-.|...+..+++-++-|+
T Consensus 6 ~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 6 QFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp SSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666767666666777777777665555544444444
No 47
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=60.63 E-value=27 Score=22.04 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHh
Q 027759 156 GEKIELLVDKTENLRSQAQDFRQQ 179 (219)
Q Consensus 156 ge~L~~l~~ks~~L~~~s~~f~~~ 179 (219)
.++-+.|...|.....+|...++.
T Consensus 42 ~~ks~~L~~~s~~F~~~a~~l~r~ 65 (74)
T 2nps_A 42 QDKSESLSDNATAFSNRSKQLRRQ 65 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666677777777666554
No 48
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=60.58 E-value=12 Score=18.96 Aligned_cols=22 Identities=18% Similarity=0.377 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHh
Q 027759 127 EISKLAKVKAQVSEVKGVMMEN 148 (219)
Q Consensus 127 ~~dkl~~i~~~l~~vk~im~~N 148 (219)
..+|+.-++..++|-++|..++
T Consensus 4 ~~sKm~lLKKKIEEQr~i~~~~ 25 (29)
T 3lcn_C 4 TASKMKLLKKKIEEQREILQKT 25 (29)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 3489999999999999998765
No 49
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=59.25 E-value=28 Score=21.30 Aligned_cols=44 Identities=11% Similarity=0.288 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
+.+.++++.+.++.+++.+=-..+-+.|+.||.++...++-...
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 52 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVH 52 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66889999999999999988888899999999998776666554
No 50
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=55.04 E-value=18 Score=20.43 Aligned_cols=16 Identities=25% Similarity=0.652 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHhcCCC
Q 027759 201 IIIALILIIVLSVCHGF 217 (219)
Q Consensus 201 vv~~~~~~i~~~~C~gf 217 (219)
++++.+++..++=| ||
T Consensus 21 LllL~li~~~LwK~-GF 36 (42)
T 2k1a_A 21 LLLLTILVLAMWKV-GF 36 (42)
T ss_dssp HHHHHHHHHHHHHT-TT
T ss_pred HHHHHHHHHHHHHc-Cc
Confidence 33444445556788 55
No 51
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=53.97 E-value=20 Score=22.71 Aligned_cols=15 Identities=0% Similarity=0.306 Sum_probs=7.4
Q ss_pred HHHhHHHHHHHHHHH
Q 027759 189 IQNMKIKLIVLGIII 203 (219)
Q Consensus 189 ~~~~k~~~ii~~vv~ 203 (219)
|...++-.++.++|.
T Consensus 16 Y~tLRigGLifA~vL 30 (74)
T 2zxe_G 16 YYRLRVVGLIVAAVL 30 (74)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHheeccchhHHHH
Confidence 455555555544433
No 52
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=53.46 E-value=6.3 Score=24.25 Aligned_cols=48 Identities=13% Similarity=0.103 Sum_probs=28.5
Q ss_pred HHHHhhhHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027759 162 LVDKTENLRSQAQDFRQQGTKMRRKMWIQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 162 l~~ks~~L~~~s~~f~~~a~~l~~~~~~~~~k~~~ii~~vv~~~~~~i 209 (219)
+.+...+.-.++..|-+.++|=.|+-+.+-.|...+..+++-++-|+|
T Consensus 4 ~~e~~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~I 51 (61)
T 3mp7_B 4 LQERIRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLI 51 (61)
T ss_dssp ----CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666777777777777777777777666555554444443
No 53
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=51.69 E-value=17 Score=18.06 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 027759 196 LIVLGIIIALILIIVL 211 (219)
Q Consensus 196 ~ii~~vv~~~~~~i~~ 211 (219)
+|+..+...+++++|+
T Consensus 10 LIviav~aaVllylW~ 25 (26)
T 3j1r_A 10 LILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444445555554
No 54
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=50.81 E-value=40 Score=20.59 Aligned_cols=52 Identities=12% Similarity=0.191 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 027759 136 AQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKM 187 (219)
Q Consensus 136 ~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (219)
..+..++.-+.+-.+-+.++-+++-.=-++-+.|.+.|..+...|...++..
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A 60 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTS 60 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566665555555555555555555566666666777776666666543
No 55
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella flexneri} PDB: 2xxs_A
Probab=50.80 E-value=29 Score=23.57 Aligned_cols=43 Identities=14% Similarity=0.445 Sum_probs=31.8
Q ss_pred ceEEEEEEeCCeEEEeecCCCCCHHHHHHHHhccCCCCCCeeEEEECCeEEEEEe
Q 027759 5 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLV 59 (219)
Q Consensus 5 ~i~Ya~Iar~~~iLae~~~~~~~~~~ia~~il~ki~~~~~k~~~~~~~~~~~~l~ 59 (219)
-|+|.-|+++.. |++++..+ +++.-+.+--+++++|..||...
T Consensus 85 giiyltiskdni--cqfsdekg----------eqidinsqfnsfeydgisfhlkn 127 (146)
T 4a4y_A 85 GIIYLTISKDNI--CQFSDEKG----------EQIDINSQFNSFEYDGISFHLKN 127 (146)
T ss_dssp EEEEEEECTTCC--EEEECTTS----------CEECCCSSSSEEEETTEEEEEEE
T ss_pred cEEEEEEecCcc--eecccccC----------cEeeccccccceeecceEeehhc
Confidence 388999999885 88988765 33444434458999999999864
No 56
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=50.53 E-value=41 Score=20.60 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHH
Q 027759 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQ 178 (219)
Q Consensus 130 kl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~ 178 (219)
++..+...+.+..+.+.+.-+++=.=.++-+.|.+.+++.+.+|..+++
T Consensus 12 qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~ 60 (63)
T 1urq_A 12 AASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMML 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555566666667777777777766654
No 57
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=49.83 E-value=18 Score=22.73 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.9
Q ss_pred HHHHHhHHHHHHHhHHHHHhhhH
Q 027759 135 KAQVSEVKGVMMENIEKVLDRGE 157 (219)
Q Consensus 135 ~~~l~~vk~im~~Ni~~vl~Rge 157 (219)
.++++++++|+..|+.++-+|.-
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~~ 28 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRLR 28 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999988864
No 58
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=48.70 E-value=15 Score=18.59 Aligned_cols=24 Identities=29% Similarity=0.635 Sum_probs=14.6
Q ss_pred HHHHHHHhHHHHHHHhHHHHHhhhHHHH
Q 027759 133 KVKAQVSEVKGVMMENIEKVLDRGEKIE 160 (219)
Q Consensus 133 ~i~~~l~~vk~im~~Ni~~vl~Rge~L~ 160 (219)
.+++++.++| .++|.+|+|=|+++
T Consensus 3 ~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 3 AIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 3455555544 46777887766654
No 59
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=48.47 E-value=40 Score=19.83 Aligned_cols=40 Identities=8% Similarity=0.207 Sum_probs=32.3
Q ss_pred HHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 133 KVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 133 ~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
....-+.++.++-.+.+..+-+.||+|+...+.-++....
T Consensus 4 ~~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~ 43 (54)
T 1nhl_A 4 RILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKD 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhH
Confidence 3456678899999999999999999999888766666554
No 60
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=47.44 E-value=54 Score=21.05 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
..+.++++.+.++.+++.+=-..+-+.|+-|+.++...++-...
T Consensus 21 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~ 64 (83)
T 1sfc_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDY 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 67889999999999999988888899999999998776665544
No 61
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=46.70 E-value=14 Score=23.90 Aligned_cols=51 Identities=10% Similarity=0.202 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHh
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQ 179 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~ 179 (219)
+.+..++..+.+.-+.+.+.=+++=+=.++-+.|.+.|.....+|...++.
T Consensus 22 ~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk 72 (80)
T 1l4a_A 22 AQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRK 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444555666777788888888777553
No 62
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=46.64 E-value=17 Score=24.38 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=31.3
Q ss_pred HHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhh
Q 027759 115 KEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDR 155 (219)
Q Consensus 115 ~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~R 155 (219)
+..++.|+.+|+..+...++|+=+++....-+.|+.++|++
T Consensus 43 ~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 43 EAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556787777777888889988888888878888777754
No 63
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=45.89 E-value=13 Score=18.18 Aligned_cols=13 Identities=15% Similarity=0.618 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHh
Q 027759 180 GTKMRRKMWIQNM 192 (219)
Q Consensus 180 a~~l~~~~~~~~~ 192 (219)
-..++|+||.++.
T Consensus 4 ~Q~~rRr~wL~~l 16 (24)
T 3h3g_B 4 IQDLRRRFFLHHL 16 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3578899998874
No 64
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=43.83 E-value=4.8 Score=28.42 Aligned_cols=24 Identities=17% Similarity=0.355 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 027759 188 WIQNMKIKLIVLGIIIALILIIVL 211 (219)
Q Consensus 188 ~~~~~k~~~ii~~vv~~~~~~i~~ 211 (219)
.++.+.+.++++++++++++++|+
T Consensus 101 ~~~~~~~~~i~~~~~i~i~~~~~~ 124 (130)
T 3fym_A 101 KSKEPIQLLVIMGITVLITLLLWI 124 (130)
T ss_dssp ------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345555566665555555555554
No 65
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=41.03 E-value=27 Score=22.66 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHH---HHHHHhHHHHHHHHHHH
Q 027759 154 DRGEKIELLVDKTENLRSQAQDFRQQGTKMRRK---MWIQNMKIKLIVLGIII 203 (219)
Q Consensus 154 ~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~---~~~~~~k~~~ii~~vv~ 203 (219)
+.|++.+...++-+.+.+...+|.+.++++=++ -=|+-|....-+.++.+
T Consensus 6 ~k~~~~~~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~ 58 (80)
T 2ww9_B 6 EKGEEKKQSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGF 58 (80)
T ss_dssp ---------------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHH
T ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 344445555555555666666777766554432 23444554444444433
No 66
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=40.56 E-value=66 Score=20.11 Aligned_cols=56 Identities=5% Similarity=0.107 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMR 184 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~ 184 (219)
+.....-.-.++..++=..++..+-+-||+|+..+..-+.+..+.+.=.++.+.|+
T Consensus 12 ~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 12 ASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455566677788888889999999999999998888888777665555555554
No 67
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=40.56 E-value=21 Score=21.31 Aligned_cols=16 Identities=19% Similarity=0.478 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHhcC
Q 027759 200 GIIIALILIIVLSVCH 215 (219)
Q Consensus 200 ~vv~~~~~~i~~~~C~ 215 (219)
+++++.+++.+++=||
T Consensus 22 GLllL~li~~~LwK~G 37 (54)
T 2knc_A 22 GLLLLTILVLAMWKVG 37 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3344444455567784
No 68
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=39.48 E-value=22 Score=21.17 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhcC
Q 027759 201 IIIALILIIVLSVCH 215 (219)
Q Consensus 201 vv~~~~~~i~~~~C~ 215 (219)
++++.+++.+++=||
T Consensus 20 LLLL~Lii~~LwK~G 34 (54)
T 2l8s_A 20 LLLLMLLILALWKIG 34 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 334444455567784
No 69
>1zkr_A Major allergen I polypeptide, fused chain 1, CHAI; CAT allergen, uteroglobin, secretoglobin; 1.64A {Felis catus} SCOP: a.101.1.1 a.101.1.1 PDB: 2ejn_A
Probab=39.03 E-value=46 Score=24.29 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=30.8
Q ss_pred HHHhchhhcCCchhhhHHHHHHHHHH-hHHHHHHHhHHHHHhhh
Q 027759 114 LKEHMQYCVDHPEEISKLAKVKAQVS-EVKGVMMENIEKVLDRG 156 (219)
Q Consensus 114 l~~~~~~~~~~~~~~dkl~~i~~~l~-~vk~im~~Ni~~vl~Rg 156 (219)
....++.|+.+|+......++++-++ ....-=+.|+.++|++-
T Consensus 22 Yk~~LkkYn~~pealeA~~eLKqCvD~~LS~Etr~nI~klLekI 65 (153)
T 1zkr_A 22 YVEQVAQYKALPVVLENARILKNCVDAKMTEEDKENALSLLDKI 65 (153)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 34555677778877788888888888 66666667777666553
No 70
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=38.66 E-value=84 Score=20.77 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhH
Q 027759 127 EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169 (219)
Q Consensus 127 ~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L 169 (219)
...++..+-.++..++--|..++++-.++-+.+-++.+|-...
T Consensus 31 ~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls~a 73 (91)
T 2pjw_V 31 EDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKISEI 73 (91)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999999999999888777777665443
No 71
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=37.60 E-value=1e+02 Score=27.67 Aligned_cols=24 Identities=8% Similarity=0.277 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Q 027759 169 LRSQAQDFRQQGTKMRRKMWIQNM 192 (219)
Q Consensus 169 L~~~s~~f~~~a~~l~~~~~~~~~ 192 (219)
|.++=..|+.+-++|..+|=..+-
T Consensus 517 ~~~~~~~~~e~~~ql~~kme~~~~ 540 (592)
T 1f5n_A 517 MEQKERSYQEHLKQLTEKMENDRV 540 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555677777777776655443
No 72
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=37.05 E-value=84 Score=20.34 Aligned_cols=45 Identities=9% Similarity=0.243 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
.+.....-.-+++.+++....+..+..-||+|+..+...+++...
T Consensus 26 l~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~d 70 (83)
T 1l4a_C 26 LESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQD 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366667778889999999999999999999999998877777655
No 73
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=36.43 E-value=37 Score=18.37 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 027759 196 LIVLGIIIALILIIVL 211 (219)
Q Consensus 196 ~ii~~vv~~~~~~i~~ 211 (219)
.++++++++++.++++
T Consensus 7 ~ivalivalIiaIVVW 22 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVW 22 (36)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555444444433
No 74
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=34.48 E-value=90 Score=19.89 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHH
Q 027759 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQ 172 (219)
Q Consensus 128 ~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~ 172 (219)
.+.+.....-+.++.++-.+.+..+-..||.|+...+..++....
T Consensus 22 ~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~ 66 (79)
T 1n7s_C 22 LESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQD 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhH
Confidence 477788888999999999999999999999999988776666554
No 75
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=33.84 E-value=63 Score=19.87 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=14.5
Q ss_pred HHhhhHHHHHHHHHhhhHHHHHHHH
Q 027759 152 VLDRGEKIELLVDKTENLRSQAQDF 176 (219)
Q Consensus 152 vl~Rge~L~~l~~ks~~L~~~s~~f 176 (219)
++++|++|..|.+.+.........+
T Consensus 7 LveNgekI~~L~~~v~~~e~~Q~~l 31 (64)
T 3t97_C 7 LIENGEKITSLHREVEKVKLDQKRL 31 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666555443333
No 76
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=33.79 E-value=32 Score=27.42 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhH
Q 027759 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL 169 (219)
Q Consensus 129 dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L 169 (219)
..+.++++.+.++.+++.+=-..|.+.|+-|+.++...++-
T Consensus 200 ~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a 240 (267)
T 1dn1_B 200 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHA 240 (267)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45778888888899888877777889999999998777664
No 77
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=32.87 E-value=55 Score=20.34 Aligned_cols=14 Identities=7% Similarity=0.363 Sum_probs=6.3
Q ss_pred HHHhHHHHHHHHHH
Q 027759 189 IQNMKIKLIVLGII 202 (219)
Q Consensus 189 ~~~~k~~~ii~~vv 202 (219)
|...++-.++.++|
T Consensus 14 Y~tLRigGLifA~v 27 (67)
T 2jp3_A 14 WESLQLGGLIFGGL 27 (67)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred hHHheecchhhHHH
Confidence 44455444444433
No 78
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=32.48 E-value=22 Score=28.58 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 027759 181 TKMRRKMWIQNMKIKLIVLGIIIALILII 209 (219)
Q Consensus 181 ~~l~~~~~~~~~k~~~ii~~vv~~~~~~i 209 (219)
.+-.+|.|+++.-.+++++++++++++..
T Consensus 25 ~~~~kk~~~~~~~~~~~~~~l~~~~~~~~ 53 (263)
T 3vmt_A 25 GKPPKKKKSKRILLKILLTILIIIALFIG 53 (263)
T ss_dssp ----------CCTTHHHHHHHHHHHHHHH
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35556777777766666655555444433
No 79
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=30.78 E-value=64 Score=17.08 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=4.0
Q ss_pred HHHHHhhhHH
Q 027759 161 LLVDKTENLR 170 (219)
Q Consensus 161 ~l~~ks~~L~ 170 (219)
.|++|.++|-
T Consensus 5 QLE~kVEeLl 14 (34)
T 2oxj_A 5 QLEXKVXELL 14 (34)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 80
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=30.57 E-value=7.7 Score=24.20 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 027759 194 IKLIVLGIIIALILIIVLSVC 214 (219)
Q Consensus 194 ~~~ii~~vv~~~~~~i~~~~C 214 (219)
+.+++++++.+++|.-+..+|
T Consensus 10 ~LivlGg~~~lll~~glcI~c 30 (70)
T 2klu_A 10 ALIVLGGVAGLLLFIGLGIFF 30 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHH
Confidence 335677776666666555554
No 81
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=29.94 E-value=83 Score=23.17 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=38.6
Q ss_pred cCCcccchHHHHHHHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhH
Q 027759 70 VESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENI 149 (219)
Q Consensus 70 d~~~~~~~af~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni 149 (219)
|-+|.+...-..|.|.++...+..... .++-| ...++....+| .+|+=.+.+-.- +..+.-.-+.+.+
T Consensus 85 dfTfD~~~L~~~L~ec~~lL~~lv~~H----LT~KS-----~~Ri~~vF~~f-~~~efL~~lf~~--~~~~~L~kI~~~L 152 (161)
T 3f4m_A 85 DFTFEAAVLAGLLTECRDVLLELVEHH----LTPKS-----HGRIRHVFDHF-SDPGLLTALYGP--DFTQHLGKICDGL 152 (161)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHTTT----SCHHH-----HHHHHHHHHHH-TCHHHHHHHTSG--GGHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHhh----CCcch-----HHHHHHHHHHh-CCHHHHHHHhCc--HHHHHHHHHHHHH
Confidence 344555555666666666665554211 11111 13455555555 345332222222 4444445556778
Q ss_pred HHHHhhhH
Q 027759 150 EKVLDRGE 157 (219)
Q Consensus 150 ~~vl~Rge 157 (219)
+++|++|.
T Consensus 153 nklld~g~ 160 (161)
T 3f4m_A 153 RKLLDEGK 160 (161)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 88888874
No 82
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=28.02 E-value=63 Score=21.46 Aligned_cols=11 Identities=18% Similarity=0.601 Sum_probs=7.4
Q ss_pred HHHHHHHHHhh
Q 027759 81 FLERVKEDFNK 91 (219)
Q Consensus 81 fL~~i~~~f~~ 91 (219)
||++|...|..
T Consensus 17 ~Ld~vs~~f~~ 27 (92)
T 2g0u_A 17 YLTGIGRAFDD 27 (92)
T ss_dssp HHHHHHGGGCT
T ss_pred hHHHHHHHHHH
Confidence 77777776653
No 83
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=26.90 E-value=75 Score=19.92 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=4.6
Q ss_pred HHhHHHHHHHH
Q 027759 190 QNMKIKLIVLG 200 (219)
Q Consensus 190 ~~~k~~~ii~~ 200 (219)
...++-.++.+
T Consensus 14 ~tLRiGGLifA 24 (72)
T 2jo1_A 14 QSLQIGGLVIA 24 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhccchHHH
Confidence 34444444433
No 84
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=26.26 E-value=20 Score=17.14 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=5.8
Q ss_pred HHHHHHhH
Q 027759 186 KMWIQNMK 193 (219)
Q Consensus 186 ~~~~~~~k 193 (219)
+.||+++-
T Consensus 2 ~~WkK~f~ 9 (22)
T 3kf9_B 2 RRWKKNFI 9 (26)
T ss_dssp HHHHHHHH
T ss_pred chHHHHHH
Confidence 46888864
No 85
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.16 E-value=89 Score=16.51 Aligned_cols=7 Identities=29% Similarity=0.316 Sum_probs=2.6
Q ss_pred HHHhhhH
Q 027759 163 VDKTENL 169 (219)
Q Consensus 163 ~~ks~~L 169 (219)
++|-++|
T Consensus 7 EdKVEeL 13 (34)
T 3c3f_A 7 EXKLEXI 13 (34)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 86
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=23.38 E-value=91 Score=16.34 Aligned_cols=18 Identities=28% Similarity=0.611 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027759 193 KIKLIVLGIIIALILIIV 210 (219)
Q Consensus 193 k~~~ii~~vv~~~~~~i~ 210 (219)
|-.+|+..++++++.+|.
T Consensus 11 KrLlivVvVvVlvVvViv 28 (35)
T 1spf_A 11 KRLLVVVVVVVLVVVVIV 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred heEEEEEeeehhhHHHHH
Confidence 333444444444444443
No 87
>2kfe_A Meucin-24; alpha-helix, antimicrobial protein; NMR {Synthetic}
Probab=22.83 E-value=45 Score=16.59 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhHHHHHHH
Q 027759 130 KLAKVKAQVSEVKGVMME 147 (219)
Q Consensus 130 kl~~i~~~l~~vk~im~~ 147 (219)
-+.++++.+.++++-|..
T Consensus 6 i~~kiK~kl~~akdK~k~ 23 (26)
T 2kfe_A 6 FMSNLKEKLSGVKEKMKN 23 (26)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 355667777777776643
No 88
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.24 E-value=37 Score=19.28 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 027759 197 IVLGIII 203 (219)
Q Consensus 197 ii~~vv~ 203 (219)
|.+++|.
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333333
No 89
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.19 E-value=87 Score=16.78 Aligned_cols=16 Identities=19% Similarity=0.571 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 027759 194 IKLIVLGIIIALILII 209 (219)
Q Consensus 194 ~~~ii~~vv~~~~~~i 209 (219)
...|.+++|.+++++|
T Consensus 7 ~~sIaagVvglll~vi 22 (35)
T 1iij_A 7 VTFIIATVVGVLLFLI 22 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcEeHHHHHHHHHHHH
Confidence 3445555555333333
No 90
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.91 E-value=2e+02 Score=25.46 Aligned_cols=70 Identities=10% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHhchhhcCCchhhhHHHHHHHHHHhHHHHHHHhHHHHHhhhHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHH
Q 027759 113 KLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKM 187 (219)
Q Consensus 113 ~l~~~~~~~~~~~~~~dkl~~i~~~l~~vk~im~~Ni~~vl~Rge~L~~l~~ks~~L~~~s~~f~~~a~~l~~~~ 187 (219)
.|+.+|.+ ++.+-...|++++++++++ .--...++... ....+.|..+-.+-.++-+.+..-+..|+|+.
T Consensus 50 rLQglLdk--qErDltkrINELKnqLEdl-sKnsKdseqy~--k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrI 119 (562)
T 3ghg_A 50 RMKGLIDE--VNQDFTNRINKLKNSLFEY-QKNNKDSHSLT--TNIMEILRGDFSSANNRDNTYNRVSEDLRSRI 119 (562)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHTHH-HHHHHHHHHHH--HHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred chhhhHHh--hcCcHHHHHHHHHHHHHHH-HhhchhHHHHH--HHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
No 91
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=20.47 E-value=3.2e+02 Score=21.59 Aligned_cols=37 Identities=5% Similarity=0.025 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhhcCCCCccccccccchHHHhHHHHHhchhh
Q 027759 79 IAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYC 121 (219)
Q Consensus 79 f~fL~~i~~~f~~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~~ 121 (219)
-.|+.++........ ....||.| .-++..|...+..+
T Consensus 103 ~~f~~~l~~~l~~~~-----~~~lPFEf-raLEa~L~~v~~~L 139 (261)
T 3rkg_A 103 SVLMYDLESKLSSTK-----NNSQFYEH-RALESIFINVMSAL 139 (261)
T ss_dssp HHHHHHHHHHHHCSS-----CCSSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCC-----CCCCChHH-HHHHHHHHHHHHHH
Confidence 358888887775421 12356655 33444555444433
No 92
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=20.38 E-value=79 Score=16.44 Aligned_cols=11 Identities=0% Similarity=0.165 Sum_probs=4.7
Q ss_pred HHHhHHHHHHH
Q 027759 189 IQNMKIKLIVL 199 (219)
Q Consensus 189 ~~~~k~~~ii~ 199 (219)
|...+.-.++.
T Consensus 7 y~tLrigGLi~ 17 (31)
T 3n2f_G 7 YETVRNGGLIF 17 (31)
T ss_dssp HHHHHHHHTTT
T ss_pred hHHHhhcchhH
Confidence 34444444433
Done!