BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027761
         (219 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AM6|A Chain A, C-terminal Domain Of Actin-related Protein Arp8 From S.
           Cerevisiae
 pdb|4AM6|B Chain B, C-terminal Domain Of Actin-related Protein Arp8 From S.
           Cerevisiae
 pdb|4AM7|A Chain A, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
           From S. Cerevisiae
 pdb|4AM7|B Chain B, Adp-bound C-terminal Domain Of Actin-related Protein Arp8
           From S. Cerevisiae
          Length = 655

 Score = 27.7 bits (60), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 121 LMDAFQLKDQLLDKFNAQGHFPNQCQENELSTLKCLVNFIVVISLTAIFTYLTLFSS 177
           ++DA  + DQL DK    G   N  +EN     K +V  I   S+TA  T +  F S
Sbjct: 449 ILDAHNIIDQLQDKPENYG---NTLKENFAPLEKAIVQSIANASITADVTRMNSFYS 502


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.139    0.442 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,129,786
Number of Sequences: 62578
Number of extensions: 227666
Number of successful extensions: 499
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 1
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (23.5 bits)