Query 027761
Match_columns 219
No_of_seqs 200 out of 768
Neff 5.9
Searched_HMMs 29240
Date Tue Mar 26 01:20:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2an7_A Protein PARD; bacterial 28.3 50 0.0017 23.7 3.2 42 25-66 6-50 (83)
2 2ba3_A NIKA; dimer, bacterial 21.4 1.5E+02 0.005 18.2 4.3 26 20-45 15-40 (51)
3 3ts9_A Interferon-induced heli 17.7 95 0.0033 24.2 3.2 28 114-141 110-137 (138)
4 3ewt_E Tumor necrosis factor r 15.2 1E+02 0.0034 17.2 2.0 14 31-44 12-25 (25)
5 1baz_A ARC repressor; transcri 14.3 1.6E+02 0.0056 18.5 3.2 20 26-45 13-32 (53)
6 2k9i_A Plasmid PRN1, complete 14.1 2.3E+02 0.0078 17.1 4.3 26 20-45 9-34 (55)
7 3hyk_A Holo-[acyl-carrier-prot 13.9 1.6E+02 0.0056 21.6 3.6 22 116-137 48-69 (122)
8 3f09_A Holo-[acyl-carrier-prot 13.1 1.9E+02 0.0065 22.0 3.8 22 116-137 70-91 (143)
9 3guv_A Site-specific recombina 12.0 3.5E+02 0.012 20.2 5.2 51 18-68 4-72 (167)
10 2lju_A Putative oxidoreductase 11.8 78 0.0027 23.6 1.2 16 30-45 67-82 (108)
No 1
>2an7_A Protein PARD; bacterial antidote, ribbon-helix-helix, DNA-binding motif, plasmid addiction, DNA binding protein; NMR {Escherichia coli}
Probab=28.29 E-value=50 Score=23.67 Aligned_cols=42 Identities=14% Similarity=0.187 Sum_probs=34.6
Q ss_pred EeeCHHHHHHHHHHHHHcCCCC---CccccccCchhHHHHHHHhh
Q 027761 25 FWFSEEKRNRSQKFAADVGLPV---LTNVLLPKTRGFCLCLETLR 66 (219)
Q Consensus 25 ~RfT~~k~~kS~~fA~k~gLP~---lkhvL~PRtkGf~~~l~~Lr 66 (219)
+|+++++|++-+++|++.|.-. ....|.|--.+-..+.+.|.
T Consensus 6 IrLpd~qH~rLKalAa~qG~SInqli~E~lf~~~~~~~~aw~el~ 50 (83)
T 2an7_A 6 IDMTDQQHQSLKALAALQGKTIKQYALERLFPGDADADQAWQELK 50 (83)
T ss_dssp EEECHHHHHHHHHHHHHHTSCHHHHHHHHTSCCCSSHHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHcCCcHHHHHHHHcccCCCcHHHHHHHHH
Confidence 3899999999999999999883 34557888788888887775
No 2
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=21.36 E-value=1.5e+02 Score=18.18 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.5
Q ss_pred EEEEEEeeCHHHHHHHHHHHHHcCCC
Q 027761 20 HILLYFWFSEEKRNRSQKFAADVGLP 45 (219)
Q Consensus 20 ~~~~~~RfT~~k~~kS~~fA~k~gLP 45 (219)
+..+=+|+|++-.+.-++.|+..|+.
T Consensus 15 ~~~i~vRlt~eE~~~l~~~A~~~g~s 40 (51)
T 2ba3_A 15 TVVRTLRFSPVEDETIRKKAEDSGLT 40 (51)
T ss_dssp SEEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred ceeEEEEECHHHHHHHHHHHHHhCCC
Confidence 34455799999999999999999987
No 3
>3ts9_A Interferon-induced helicase C domain-containing P; helix bundle, fancm helicase, super family 2 helicase, SF2 H DEXD/H helicase; 2.00A {Mus musculus}
Probab=17.67 E-value=95 Score=24.23 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 027761 114 ETDAAAWLMDAFQLKDQLLDKFNAQGHF 141 (219)
Q Consensus 114 e~~~~~WL~~~w~eKD~lL~~f~~~g~F 141 (219)
-++...||.++|.+|-+.|+....++.+
T Consensus 110 ~d~ter~L~~lF~e~k~eL~~lA~~~~~ 137 (138)
T 3ts9_A 110 LDETDEFLMNLFFDNKKMLKKLAENPKY 137 (138)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCGGG
T ss_pred cChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3457799999999999999998887754
No 4
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=15.24 E-value=1e+02 Score=17.16 Aligned_cols=14 Identities=14% Similarity=0.309 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHcCC.
Q 027761 31 KRNRSQKFAADVGL. 44 (219)
Q Consensus 31 k~~kS~~fA~k~gL. 44 (219)
+.....+|++++|+
T Consensus 12 ~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 12 TLSQVKGFVRKNGVx 26 (26)
T ss_pred hHHHHHHHHHHcCC.
Confidence 34567789999986
No 5
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=14.31 E-value=1.6e+02 Score=18.55 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=19.1
Q ss_pred eeCHHHHHHHHHHHHHcCCC
Q 027761 26 WFSEEKRNRSQKFAADVGLP 45 (219)
Q Consensus 26 RfT~~k~~kS~~fA~k~gLP 45 (219)
|+.++-|++-.+.|+++|.-
T Consensus 13 Rlp~eL~~~l~~~A~~~grS 32 (53)
T 1baz_A 13 RWPREVLDLVRKVAEENGRS 32 (53)
T ss_dssp ECCHHHHHHHHHHHHHTTCC
T ss_pred ECCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999986
No 6
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=14.12 E-value=2.3e+02 Score=17.06 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=21.8
Q ss_pred EEEEEEeeCHHHHHHHHHHHHHcCCC
Q 027761 20 HILLYFWFSEEKRNRSQKFAADVGLP 45 (219)
Q Consensus 20 ~~~~~~RfT~~k~~kS~~fA~k~gLP 45 (219)
...+=+|++++-+++-.++|++.|..
T Consensus 9 ~~~i~vrl~~el~~~l~~~a~~~g~s 34 (55)
T 2k9i_A 9 GIKLGVYIPQEWHDRLMEIAKEKNLT 34 (55)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred cceEEEEcCHHHHHHHHHHHHHhCCC
Confidence 34444599999999999999999985
No 7
>3hyk_A Holo-[acyl-carrier-protein] synthase; structural genomics, I diseases; HET: MSE A3P; 2.31A {Bacillus anthracis} SCOP: d.150.1.0
Probab=13.93 E-value=1.6e+02 Score=21.55 Aligned_cols=22 Identities=9% Similarity=0.209 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027761 116 DAAAWLMDAFQLKDQLLDKFNA 137 (219)
Q Consensus 116 ~~~~WL~~~w~eKD~lL~~f~~ 137 (219)
...+||..+|..||+.++....
T Consensus 48 ~~~~~la~rwaaKEA~~KAlg~ 69 (122)
T 3hyk_A 48 RLTEFVAGRFAAKEAYSKAVGT 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHhcc
Confidence 4567999999999999998875
No 8
>3f09_A Holo-[acyl-carrier-protein] synthase; structural genomics, I deseases, fatty acid biosynthesis, lipid synthesis; 1.82A {Staphylococcus aureus subsp} PDB: 4dxe_A
Probab=13.07 E-value=1.9e+02 Score=22.03 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 027761 116 DAAAWLMDAFQLKDQLLDKFNA 137 (219)
Q Consensus 116 ~~~~WL~~~w~eKD~lL~~f~~ 137 (219)
+..+||-.+|..||+.++..-.
T Consensus 70 ~~~~~lA~RwAaKEA~~KAlG~ 91 (143)
T 3f09_A 70 RKIEFLAGRFATKEAFSKALGT 91 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHhcc
Confidence 4457999999999999998753
No 9
>3guv_A Site-specific recombinase, resolvase family prote; structural genomics, PSI-2, protein structure initiative; 2.20A {Streptococcus pneumoniae}
Probab=12.02 E-value=3.5e+02 Score=20.21 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=31.8
Q ss_pred ceEEEEEEeeCHHH----------HHHHHHHHHHcCCCCCc---cc----ccc-CchhHHHHHHHhhcc
Q 027761 18 EIHILLYFWFSEEK----------RNRSQKFAADVGLPVLT---NV----LLP-KTRGFCLCLETLRNT 68 (219)
Q Consensus 18 ~~~~~~~~RfT~~k----------~~kS~~fA~k~gLP~lk---hv----L~P-RtkGf~~~l~~Lr~~ 68 (219)
+.-++.|.|.+.++ .+...+||+++|+...+ -. ... .-.||..+++.++..
T Consensus 4 ~~r~~~Y~RvSt~~q~~~~sl~~Q~~~l~~~a~~~g~~i~~~~~D~g~Sg~~~~~Rp~l~~ll~~~~~g 72 (167)
T 3guv_A 4 KIKVYLYTRVSTSIQIEGYSLEAQKSRMKAFAIYNDYEIVGEYEDAGKSGKSIEGRIQFNRMMEDIKSG 72 (167)
T ss_dssp CCEEEEEEECSSCHHHHGGGHHHHHHHHHHHHHHTTCEEEEEEEECCCSSSSSCCCHHHHHHHHHHHTC
T ss_pred CcEEEEEEEECCcccccCCCHHHHHHHHHHHHHhCCCEEEEEEeecCCCCCCcccCHHHHHHHHHHHcC
Confidence 34578899887533 23456689999987321 11 111 235888888888754
No 10
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=11.83 E-value=78 Score=23.65 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHcCCC
Q 027761 30 EKRNRSQKFAADVGLP 45 (219)
Q Consensus 30 ~k~~kS~~fA~k~gLP 45 (219)
..+|.+.+||+++|++
T Consensus 67 ~skE~AiayAek~G~~ 82 (108)
T 2lju_A 67 TTRELAIAYAVAHKID 82 (108)
T ss_dssp SSHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHcCCE
Confidence 4588999999999998
Done!