BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027762
         (219 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MUI|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
           Xylanase Of G. Stearothermophilus.
 pdb|3MUI|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
           Xylanase Of G. Stearothermophilus
          Length = 331

 Score = 26.9 bits (58), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 124 PPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHAN 183
           P +RD     FR    +NP  ++  ++ L++ +   T EN     + Q EEG    + A+
Sbjct: 6   PSLRDVFANDFRIGAAVNPVTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEAD 65

Query: 184 R 184
           R
Sbjct: 66  R 66


>pdb|3MS8|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
           Xylanase Of G. Stearothermophilus.
 pdb|3MS8|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
           Xylanase Of G. Stearothermophilus
          Length = 331

 Score = 26.9 bits (58), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 124 PPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHAN 183
           P +RD     FR    +NP  ++  ++ L++ +   T EN     + Q EEG    + A+
Sbjct: 6   PSLRDVFANDFRIGAAVNPVTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEAD 65

Query: 184 R 184
           R
Sbjct: 66  R 66


>pdb|1N82|A Chain A, The High-Resolution Crystal Structure Of Ixt6, A
           Thermophilic, Intracellular Xylanase From G.
           Stearothermophilus
 pdb|1N82|B Chain B, The High-Resolution Crystal Structure Of Ixt6, A
           Thermophilic, Intracellular Xylanase From G.
           Stearothermophilus
 pdb|3MUA|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
           Xylanase Of G. Stearothermophilus.
 pdb|3MUA|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
           Xylanase Of G. Stearothermophilus
          Length = 331

 Score = 26.9 bits (58), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 124 PPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHAN 183
           P +RD     FR    +NP  ++  ++ L++ +   T EN     + Q EEG    + A+
Sbjct: 6   PSLRDVFANDFRIGAAVNPVTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEAD 65

Query: 184 R 184
           R
Sbjct: 66  R 66


>pdb|2Q8X|A Chain A, The High-resolution Crystal Structure Of Ixt6, A
           Thermophilic, Intracellular Xylanase From G.
           Stearothermophilus
 pdb|2Q8X|B Chain B, The High-resolution Crystal Structure Of Ixt6, A
           Thermophilic, Intracellular Xylanase From G.
           Stearothermophilus
 pdb|3MSD|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
           Xylanase Of G. Stearothermophilus.
 pdb|3MSD|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
           Xylanase Of G. Stearothermophilus.
 pdb|3MSG|A Chain A, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
           Xylanase Of G. Stearothermophilus.
 pdb|3MSG|B Chain B, Enzyme-Substrate Interactions Of Ixt6, The Intracellular
           Xylanase Of G. Stearothermophilus
          Length = 331

 Score = 26.9 bits (58), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 29/61 (47%)

Query: 124 PPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHAN 183
           P +RD     FR    +NP  ++  ++ L++ +   T EN     + Q EEG    + A+
Sbjct: 6   PSLRDVFANDFRIGAAVNPVTIEMQKQLLIDHVNSITAENHMKFEHLQPEEGKFTFQEAD 65

Query: 184 R 184
           R
Sbjct: 66  R 66


>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
           Gamma (Gmfg)
 pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
           Gamma (Gmfg)
          Length = 136

 Score = 26.9 bits (58), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 130 RKRRFRREPDLNPELVQRVEKDLLNIMTGATVENADPE 167
           RK RFR+E D N  ++ +V+KD   ++     +N  PE
Sbjct: 15  RKFRFRKETD-NAAIIMKVDKDRQMVVLEEEFQNISPE 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,265,634
Number of Sequences: 62578
Number of extensions: 236308
Number of successful extensions: 471
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 7
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)