BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027762
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9R1C0|TAF7_MOUSE Transcription initiation factor TFIID subunit 7 OS=Mus musculus
GN=Taf7 PE=1 SV=1
Length = 341
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 32/187 (17%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFILR+PP A + R + + +DK L + DGR G + L+DL
Sbjct: 12 LESQFILRLPPEYAATVRRAVQSGHVNLKDK-LSIELHPDGRHGIVRVDRVPLAAKLVDL 70
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
PCV ES KT D KTADI QM++ GD P E
Sbjct: 71 PCVTESLKTIDKKTFYKTADISQMLVATVDGDLYPPVEEAAATADPKANKKKDKDKEKKF 130
Query: 118 -YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADPEV 168
+ HG+T P+++ RKRRFR+ PD+ E+ + + D + T + A+ E
Sbjct: 131 VWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDET 189
Query: 169 NEQEEEG 175
E E +G
Sbjct: 190 KETENQG 196
>sp|Q6R1L1|TAF7_CRIGR Transcription initiation factor TFIID subunit 7 OS=Cricetulus
griseus GN=TAF7 PE=1 SV=1
Length = 341
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 85/187 (45%), Gaps = 32/187 (17%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFILR+PP A + R + + +D+ L + DGR G + L+DL
Sbjct: 12 LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHGIVRVDRVPLAAKLVDL 70
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
PCV+ES KT D KTADI QM++ GD P E
Sbjct: 71 PCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVAPADPKASKKKDKDKEKKF 130
Query: 118 -YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADPEV 168
+ HG+T P+++ RKRRFR+ PD+ E+ + + D + T + A+ E
Sbjct: 131 VWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDET 189
Query: 169 NEQEEEG 175
E E +G
Sbjct: 190 KETENQG 196
>sp|Q5R7L9|TAF7_PONAB Transcription initiation factor TFIID subunit 7 OS=Pongo abelii
GN=TAF7 PE=2 SV=1
Length = 349
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 36/189 (19%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVS--LM 76
+E QFILR+PP A + R + + +D+ L + DGR G ++ D P++ L+
Sbjct: 12 LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHG--IVRVDRVPLASKLV 68
Query: 77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE------------------- 117
DLPCV+ES KT D KTADI QM++ GD P E
Sbjct: 69 DLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEK 128
Query: 118 ---YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADP 166
+ HG+T P+++ RKRRFR+ PD+ E+ + + D + T + A+
Sbjct: 129 KFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAED 187
Query: 167 EVNEQEEEG 175
E E E +G
Sbjct: 188 ETKEAENQG 196
>sp|Q4R5A5|TAF7_MACFA Transcription initiation factor TFIID subunit 7 OS=Macaca
fascicularis GN=TAF7 PE=2 SV=1
Length = 349
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 36/189 (19%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVS--LM 76
+E QFILR+PP A + R + + +D+ L + DGR G ++ D P++ L+
Sbjct: 12 LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHG--IVRVDRVPLASKLV 68
Query: 77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE------------------- 117
DLPCV+ES KT D KTADI QM++ GD P E
Sbjct: 69 DLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEK 128
Query: 118 ---YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADP 166
+ HG+T P+++ RKRRFR+ PD+ E+ + + D + T + A+
Sbjct: 129 KFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAED 187
Query: 167 EVNEQEEEG 175
E E E +G
Sbjct: 188 ETKEAENQG 196
>sp|Q15545|TAF7_HUMAN Transcription initiation factor TFIID subunit 7 OS=Homo sapiens
GN=TAF7 PE=1 SV=1
Length = 349
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 90/189 (47%), Gaps = 36/189 (19%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVS--LM 76
+E QFILR+PP A + R + + +D+ L + DGR G ++ D P++ L+
Sbjct: 12 LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LTIELHPDGRHG--IVRVDRVPLASKLV 68
Query: 77 DLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE------------------- 117
DLPCV+ES KT D KTADI QM++ GD P E
Sbjct: 69 DLPCVMESLKTIDKKTFYKTADICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEK 128
Query: 118 ---YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADP 166
+ HG+T P+++ RKRRFR+ PD+ E+ + + D + T + A+
Sbjct: 129 KFIWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAED 187
Query: 167 EVNEQEEEG 175
E E E +G
Sbjct: 188 ETKEAENQG 196
>sp|Q5H9L4|TAF7L_HUMAN Transcription initiation factor TFIID subunit 7-like OS=Homo
sapiens GN=TAF7L PE=2 SV=1
Length = 462
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 81/167 (48%), Gaps = 23/167 (13%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFILR+P A + R L+ ++S + L + DGR + + L+DL
Sbjct: 98 VENQFILRLPLEHACTV-RNLARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDL 156
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMV----------REPGDST-PDAVE---------- 117
PCV+ES +T D KTADI QM++ EP ST P+ V
Sbjct: 157 PCVIESLRTLDKKTFYKTADISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKC 216
Query: 118 -YRHGLTPPMRDARKRRFRREPDLNPELVQRVEKDLLNIMTGATVEN 163
++HG+TPP+++ RK+RFR+ P++ + + + VEN
Sbjct: 217 VWKHGITPPLKNVRKKRFRKTQKKVPDVKEMEKSSFTEYIESPDVEN 263
>sp|Q2HJG8|TAF7_BOVIN Transcription initiation factor TFIID subunit 7 OS=Bos taurus
GN=TAF7 PE=2 SV=1
Length = 349
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 84/187 (44%), Gaps = 32/187 (17%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFILR+PP A + R + + +D+ L + DGR G + L+DL
Sbjct: 12 LESQFILRLPPEYASTVRRAVQSGHVNLKDR-LSIELHPDGRHGIVRVDRVPLAAKLVDL 70
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE--------------------- 117
P V+ES KT D KTAD+ QM++ GD P E
Sbjct: 71 PRVMESLKTIDKKTFYKTADVCQMLVSTVDGDLYPPVEEPVATADPKASKKKDKDKEKKF 130
Query: 118 -YRHGLTPPMRDARKRRFRR--------EPDLNPELVQRVEKDLLNIMTGATVENADPEV 168
+ HG+T P+++ RKRRFR+ PD+ E+ + + D + T + A+ E
Sbjct: 131 VWNHGITLPLKNVRKRRFRKTAKKKYIESPDVEKEVKRLLSTDAEAVSTRWEI-IAEDET 189
Query: 169 NEQEEEG 175
E E +G
Sbjct: 190 KETENQG 196
>sp|Q9D3R9|TAF7L_MOUSE Transcription initiation factor TFIID subunit 7-like OS=Mus
musculus GN=Taf7l PE=1 SV=2
Length = 471
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 24/134 (17%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+EEQFILR+PP A + +++ ++ +DK L + F DG + N P L++L
Sbjct: 106 VEEQFILRLPPEQAYAVRKIIHSRNAAWKDK-LKIDFSPDGHHAVVQVDNVSLPAKLVNL 164
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMV----------REPGDSTPDAV------------ 116
PCV+ S KT D KTAD+ QM++ EP ST V
Sbjct: 165 PCVIGSLKTIDRKTFYKTADVSQMLVCSPEGEPHSPPEEPVVSTGPTVIGISEGKAERKK 224
Query: 117 -EYRHGLTPPMRDA 129
++HG+TPP+++
Sbjct: 225 YNWKHGITPPLKNV 238
>sp|Q9VHY5|TAF7_DROME Transcription initiation factor TFIID subunit 7 OS=Drosophila
melanogaster GN=Taf7 PE=1 SV=1
Length = 479
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 93/200 (46%), Gaps = 40/200 (20%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+E QFI+RVP +A+ + + N + +D+ L + D R G I + L+DL
Sbjct: 55 LESQFIMRVPKELADTVHEAI--NAGTIKDR-LTIQLDPDLRYGEVRIDDQILYTKLVDL 111
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE-----------------YRHG 121
P VVES+KT D+ + K+ADI Q+++ +E + + + HG
Sbjct: 112 PTVVESYKTIDNKSFYKSADICQILICKEEREDETEKESPNKNKKKDPNKVDKKYLFPHG 171
Query: 122 LTPPMRDARKRRFRREPDLN----PELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDG 177
+TPP ++ RKRRFR+ PE+ + V K LL I A D E+
Sbjct: 172 ITPPCKNVRKRRFRKTLKKKNVEAPEIEKEV-KHLLRIDNEAV--RVDYEI--------- 219
Query: 178 NARHANRKDAPSPQLKQPDI 197
N +D P +L+Q DI
Sbjct: 220 ----INEEDKPMDELEQSDI 235
>sp|O13701|TAF7_SCHPO Transcription initiation factor TFIID subunit 7
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf7 PE=1 SV=1
Length = 393
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDL 78
+EEQ ILR+PP R EN + + F +D R + + L+DL
Sbjct: 72 IEEQIILRLPPGEDCEYVRKAIENREVGRGADIWVKF-KDQRRAVVHVNGHLYAAKLVDL 130
Query: 79 PCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAVE---------YRHGLTPPMRDA 129
PC++ES K++D + K ADI QM++ E + + Y HGLT PM
Sbjct: 131 PCIIESNKSFDKKVIFKAADICQMLIATERIEHENSVLNTQLKQADYIYPHGLTTPMHWV 190
Query: 130 RKRRFRR 136
R++RFR+
Sbjct: 191 RQKRFRK 197
>sp|Q05021|TAF7_YEAST Transcription initiation factor TFIID subunit 7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF7 PE=1
SV=1
Length = 590
Score = 38.9 bits (89), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 62/188 (32%)
Query: 18 LMEEQFILRVPPSVA-ERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLM 76
L+E ILR+ P + E + L + S + + + ++ R I + + L+
Sbjct: 111 LIESGVILRILPDIQLEFVKNSLESGDYS----GISIKW-KNERHAVVTINDVMYGAILV 165
Query: 77 DLPCVVESFKTYDDCALVKTADIGQMIMVREP--------GDSTPDA------------- 115
DLP V+E K+ D L+KT D+ QM++ P PD
Sbjct: 166 DLPTVIEVNKSVDRKNLLKTFDVSQMLLCIRPIQEEEEVYALEAPDTEDLVVKHFEGIED 225
Query: 116 --------------------VEYRH-------------GLTPPMRDARKRRFRREPDLNP 142
+E +H G++PP+ + R RRFRR+ ++P
Sbjct: 226 EIWENKETFLKGYNGAPLSDMEAKHLKEIALKGYDYKHGISPPLYNVRNRRFRRK--MDP 283
Query: 143 ELVQRVEK 150
+ VEK
Sbjct: 284 NEIDYVEK 291
>sp|Q4ZNZ8|SECA_PSEU2 Protein translocase subunit SecA OS=Pseudomonas syringae pv.
syringae (strain B728a) GN=secA PE=3 SV=1
Length = 913
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 111 STPDAVEYRHG--LTPPMRDARKRRFRREP-DLNPELVQRVEKDLLNIMTGATVENADPE 167
ST D + RHG L + K+ ++RE L EL+ +++D + +++ V DPE
Sbjct: 780 STMDHL--RHGIHLRGYAQKNPKQEYKRESFTLFQELLDSIKRDTIRVLSHVQVRREDPE 837
Query: 168 VNEQEEEGDGN--ARHANRKDAPSPQLKQPDIAEAGANTGAPARSDSD 213
E D A + AP+P ++QP + E G GAP S+
Sbjct: 838 EEEARLRQDAEELASRMQFEHAPAPGIEQPLLDEEGG--GAPVAVASE 883
>sp|Q8BYH8|CHD9_MOUSE Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9
PE=1 SV=2
Length = 2885
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 46 EEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMV 105
E D+ L++SFCED +G VI ++ V LP +++ +D L K + Q+
Sbjct: 773 EVDRILEVSFCEDKDTGESVI---YYLVKWCSLPYEDSTWELKEDVDLAKIEEFEQLQAS 829
Query: 106 REPGDSTPDAVEYRHGLTPPMRDARKRRFRRE 137
R PD RH PP +K RE
Sbjct: 830 R------PDT---RHLDRPPSNIWKKIEQSRE 852
>sp|Q8NDW4|ZN248_HUMAN Zinc finger protein 248 OS=Homo sapiens GN=ZNF248 PE=2 SV=1
Length = 579
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 16/106 (15%)
Query: 18 LMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSF-------CEDGRSG--TFVIGN 68
++E+ F + P ++D +L ++ +E+D +L F E+G G TF +G
Sbjct: 68 ILEKGFPSQCHPERKWKVDDVLESSQENEDDHFWELLFHNNKTVSVENGDRGSKTFNLGT 127
Query: 69 DHFPVSLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPD 114
D PVSL + P +K D C + G +I + PD
Sbjct: 128 D--PVSLRNYP-----YKICDSCEMNLKNISGLIISKKNCSRKKPD 166
>sp|Q48EG6|SECA_PSE14 Protein translocase subunit SecA OS=Pseudomonas syringae pv.
phaseolicola (strain 1448A / Race 6) GN=secA PE=3 SV=1
Length = 913
Score = 31.6 bits (70), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 131 KRRFRREP-DLNPELVQRVEKDLLNIMTGATVENADPEVNEQE--EEGDGNARHANRKDA 187
K+ ++RE L EL+ +++D + +++ V DPE E +E + A + A
Sbjct: 800 KQEYKRESFTLFQELLDSIKRDTIRVLSHVQVRREDPEEEEARLRQEAEELASRMQFEHA 859
Query: 188 PSPQLKQPDIAEAG-----ANTGAPARSD 211
P+P + QP + E G A P R+D
Sbjct: 860 PAPGIDQPLLDEEGGEAPVAVASEPVRND 888
>sp|Q6Z2T8|SSY22_ORYSJ Soluble starch synthase 2-2, chloroplastic/amyloplastic OS=Oryza
sativa subsp. japonica GN=SSII-2 PE=2 SV=2
Length = 694
Score = 30.4 bits (67), Expect = 8.8, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 141 NPELVQRVEKDLLNIMTGATVENADPEVNEQEEEGDGNARHANRKDAPSPQLKQPDI--- 197
N E+V R K + + DP V + E DGNA+ K A K+ D+
Sbjct: 115 NGEVVSRATKSDAPV----SKPKVDPSVPASKAEADGNAQAVESKAALD---KKEDVGVA 167
Query: 198 ------AEAGANTGAPARSDSDESDDS 218
A+AG + GA + +D E+ +S
Sbjct: 168 EPLEAKADAGGDAGAVSSADDSENKES 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,384,949
Number of Sequences: 539616
Number of extensions: 3705527
Number of successful extensions: 8961
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 8895
Number of HSP's gapped (non-prelim): 73
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)