Query 027762
Match_columns 219
No_of_seqs 139 out of 241
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 01:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qoq_A Alginate and motility r 45.6 18 0.00062 25.7 3.3 24 19-42 18-41 (69)
2 1baz_A ARC repressor; transcri 38.6 23 0.00077 23.4 2.7 21 21-41 8-28 (53)
3 3c65_A Uvrabc system protein C 33.2 3.8 0.00013 35.3 -2.4 58 75-136 8-74 (226)
4 2ijx_A DNA polymerase sliding 32.7 88 0.003 25.4 6.0 50 23-78 65-116 (244)
5 1ud9_A DNA polymerase sliding 31.8 87 0.003 25.4 5.9 50 23-78 65-116 (245)
6 2nrr_A Uvrabc system protein C 31.3 7.1 0.00024 32.1 -0.9 79 74-155 9-102 (159)
7 1rwz_A DNA polymerase sliding 30.8 82 0.0028 25.7 5.5 49 22-77 64-114 (245)
8 3aiz_C DNA polymerase sliding 21.2 1.4E+02 0.0049 24.1 5.2 49 22-77 64-115 (246)
9 3aiz_A DNA polymerase sliding 19.0 1.8E+02 0.0062 23.5 5.4 49 22-77 65-119 (248)
10 1nla_A Transcriptional repress 18.3 21 0.00072 25.0 -0.4 19 21-39 8-26 (64)
No 1
>3qoq_A Alginate and motility regulator Z; protein-DNA complex, ribbon-helix-helix; HET: DNA; 3.10A {Pseudomonas aeruginosa}
Probab=45.57 E-value=18 Score=25.75 Aligned_cols=24 Identities=21% Similarity=0.577 Sum_probs=18.2
Q ss_pred ccceeEEecCcchHHHHHHHHhcC
Q 027762 19 MEEQFILRVPPSVAERIDRLLSEN 42 (219)
Q Consensus 19 iEeQfILRlPp~~A~~vr~~l~~~ 42 (219)
--.||.||+|+++-+.|+..-+..
T Consensus 18 ~~~kf~LRlP~eL~~~L~~~A~~~ 41 (69)
T 3qoq_A 18 TADKFVVRLPEGMREQIAEVARSH 41 (69)
T ss_dssp TSEEEEEECCTTHHHHHHHHHHHT
T ss_pred cCCceEEECCHHHHHHHHHHHHHh
Confidence 346999999999888887654443
No 2
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=38.58 E-value=23 Score=23.42 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.0
Q ss_pred ceeEEecCcchHHHHHHHHhc
Q 027762 21 EQFILRVPPSVAERIDRLLSE 41 (219)
Q Consensus 21 eQfILRlPp~~A~~vr~~l~~ 41 (219)
.+|-||+|+++-+.|...-..
T Consensus 8 ~~~~lRlp~eL~~~l~~~A~~ 28 (53)
T 1baz_A 8 PQVNLRWPREVLDLVRKVAEE 28 (53)
T ss_dssp CEEEEECCHHHHHHHHHHHHH
T ss_pred CeeEEECCHHHHHHHHHHHHH
Confidence 489999999988777654433
No 3
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=33.19 E-value=3.8 Score=35.27 Aligned_cols=58 Identities=21% Similarity=0.501 Sum_probs=40.6
Q ss_pred eccCCe--eeeeeeecCCcceEEeccccceEEecCCCCCCCCcc-cc-cCCCCcc-----cchhhhccccC
Q 027762 75 LMDLPC--VVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAV-EY-RHGLTPP-----MRDARKRRFRR 136 (219)
Q Consensus 75 LVDLPc--IVEs~KT~D~k~~yKtaDIsQMLvV~~~~d~~p~~~-~~-pHGLTPP-----mknVRkRRFRK 136 (219)
+++||. -||+ +|..++.=+.=|+-| ||++++.|....| .| -.|+++| |+-|-.|||++
T Consensus 8 ~l~l~~p~rIE~---fDiSh~~G~~~V~sm-Vvf~~g~p~k~~YR~f~i~~~~g~DDya~m~Evl~RR~~r 74 (226)
T 3c65_A 8 RLGIPAPRRIEA---FDNSNIYGADPVSAL-VVFLDGKPAKKEYRKYKVKTVAGPNDYETMREVVRRRYTR 74 (226)
T ss_dssp HHTSCCCSEEEE---EEEEESSSSSCEEEE-EEEETTEECGGGCEEEECCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HhCcCCCCEEEE---EECCccCCcCceEEE-EEEeCCccChhhCceeecCCCCCCcHHHHHHHHHHHHHhh
Confidence 455654 5555 688889889999998 6777777665544 22 2467754 88899999985
No 4
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=32.72 E-value=88 Score=25.40 Aligned_cols=50 Identities=12% Similarity=0.264 Sum_probs=33.7
Q ss_pred eEEecCcchHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECC--eecceeeccC
Q 027762 23 FILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGN--DHFPVSLMDL 78 (219)
Q Consensus 23 fILRlPp~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~--~~y~a~LVDL 78 (219)
++++++ ...|.++|+... ..+.+.|.+..++.+..|.+++ ..|..+|+|-
T Consensus 65 i~~~~~---l~~l~kiL~~~~---~~~~v~i~~~~~~~~l~~~~~~~~~~~~~rlidg 116 (244)
T 2ijx_A 65 FKFGFN---TQYLMKILKVAK---RKEAIEIASESPDSVIINIIGSTNREFNVRNLEV 116 (244)
T ss_dssp EEEEEE---HHHHHHHHTTCC---SSCEEEEEEEETTEEEEEEESSSEEEEEEECCCC
T ss_pred EEEEEE---HHHHHHHHhhCC---CCCEEEEEecCCCCEEEEEECCEEEEEEEECCcc
Confidence 455555 456667776322 1345888887666889999988 7777777763
No 5
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=31.84 E-value=87 Score=25.43 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=33.1
Q ss_pred eEEecCcchHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECC--eecceeeccC
Q 027762 23 FILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGN--DHFPVSLMDL 78 (219)
Q Consensus 23 fILRlPp~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~--~~y~a~LVDL 78 (219)
++++++ ...|.++|+... ..+.+.|.+..++.+..|.++| ..|..+|+|-
T Consensus 65 i~~~~~---l~~l~kiL~~~~---~~~~v~i~~~~~~~~l~~~~~~~~~~~~~rlidg 116 (245)
T 1ud9_A 65 FKFGFN---TQYMSKLLKAAK---RKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEV 116 (245)
T ss_dssp EEEEEE---HHHHHHHHTTCC---SCCCEEEEEEETTEEEEEECSSSCEEEEEECCCC
T ss_pred eEEEEE---HHHHHHHHhcCC---CCCEEEEEEcCCCCEEEEEECCEEEEEEEECccc
Confidence 455555 556667776322 1345888887555688999988 7777777663
No 6
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=31.29 E-value=7.1 Score=32.09 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=45.0
Q ss_pred eeccCCeeeeeeeecCCcceEEeccccceEEecCCCCCCCCcc---cccCCCCc-----ccchhhhccccCC--CCC---
Q 027762 74 SLMDLPCVVESFKTYDDCALVKTADIGQMIMVREPGDSTPDAV---EYRHGLTP-----PMRDARKRRFRRE--PDL--- 140 (219)
Q Consensus 74 ~LVDLPcIVEs~KT~D~k~~yKtaDIsQMLvV~~~~d~~p~~~---~~pHGLTP-----PmknVRkRRFRK~--~~~--- 140 (219)
.++.||.+..-.--+|..++.=+.=|+-| ||++++.+....| ... | ++ -|+-|-.|||++- +++
T Consensus 9 ~~L~L~~~P~RIE~fDiSh~~G~~~Vasm-VVf~~g~p~K~~YRrf~I~-~-~g~DDya~M~Evl~RR~~r~~~PDLilI 85 (159)
T 2nrr_A 9 KLLNMKDFPYRIEGIDISHLQGKYTVASL-VVFEDGFPKKGDYRRYKIE-Q-DHPDDYESIRTVVKRRYSKHPLPNLLFV 85 (159)
T ss_dssp HHTTCSSCCCEEEEEEEECC---CCEEEE-EEEETTEECGGGCEEEEC-------CHHHHHHHHHHHHHTTSCCCSEEEE
T ss_pred HHhCCCCCCCEEEEEECCccCCccceEEE-EEEeCCccChhhCceeecC-C-CCCCHHHHHHHHHHHHhccCCCCCEEEE
Confidence 35566654344445689999999999999 6666676655443 222 3 54 3888999999873 221
Q ss_pred --ChHHHHHHHHHHHHH
Q 027762 141 --NPELVQRVEKDLLNI 155 (219)
Q Consensus 141 --~~~~Ie~VEkel~~L 155 (219)
-+..+..+.+-|..|
T Consensus 86 DGGkgQl~aA~~vl~el 102 (159)
T 2nrr_A 86 DGGIGQVNAAIEALKEI 102 (159)
T ss_dssp SSCHHHHHHHHHHHHHT
T ss_pred eCCHHHHHHHHHHHHHc
Confidence 244555555555444
No 7
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=30.83 E-value=82 Score=25.66 Aligned_cols=49 Identities=10% Similarity=0.080 Sum_probs=31.1
Q ss_pred eeEEecCcchHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECC--eecceeecc
Q 027762 22 QFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGN--DHFPVSLMD 77 (219)
Q Consensus 22 QfILRlPp~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~--~~y~a~LVD 77 (219)
.++++++ ...|.++|+... ..+.+.|.+..++ +..|.+++ ..|..+|+|
T Consensus 64 ~i~~~~~---l~el~kiL~~~~---~~~~v~i~~~~~~-~l~~~~~~~~~~~~~rlid 114 (245)
T 1rwz_A 64 EKTIGVD---MDRIFDISKSIS---TKDLVELIVEDES-TLKVKFGSVEYKVALIDPS 114 (245)
T ss_dssp CEEEEEE---HHHHHHHHTTSC---TTSEEEEEESSSS-EEEEEETTEEEEEECBCGG
T ss_pred CeEEEEE---HHHHHHHHhhCC---CCCEEEEEECCCC-eEEEEEeeeEEEEEEEccc
Confidence 3455555 556667776322 1345778776434 89999998 777766665
No 8
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=21.16 E-value=1.4e+02 Score=24.14 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=29.9
Q ss_pred eeEEecCcchHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECC---eecceeecc
Q 027762 22 QFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGN---DHFPVSLMD 77 (219)
Q Consensus 22 QfILRlPp~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~---~~y~a~LVD 77 (219)
.++++++ ...|.++|+... ..+.+.|.+. ++.+..|.+++ ..|..+|+|
T Consensus 64 ~i~~~~~---l~~l~kiL~~~~---~~~~v~i~~~-~~~~l~~~~~~~~~~~~~~rlid 115 (246)
T 3aiz_C 64 EEKVGVK---LEDFTDVLKTVT---KNDSLYLETD-ENQNIKVTLDGVYERTFTFPSIV 115 (246)
T ss_dssp CEEEEEE---HHHHHHHHTTCC---TTCEEEEEEC-SSSCEEEEEESSSEEEEEECCCC
T ss_pred CeEEEEE---HHHHHHHHhhCC---CCCEEEEEEC-CCCeEEEEEecCcEEEEEEEccc
Confidence 3555555 456667775322 1345778773 44589999987 666655554
No 9
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=19.04 E-value=1.8e+02 Score=23.54 Aligned_cols=49 Identities=8% Similarity=0.176 Sum_probs=32.1
Q ss_pred eeEEecCcchHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECC------eecceeecc
Q 027762 22 QFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGN------DHFPVSLMD 77 (219)
Q Consensus 22 QfILRlPp~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~------~~y~a~LVD 77 (219)
.+++++| ...|.++++.. + .+.+.|.+..++.+..|.+++ ..|..+|+|
T Consensus 65 ~i~~~~~---l~~l~kil~~~--~--~~~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlid 119 (248)
T 3aiz_A 65 PLGIKIN---INDLKKILGKA--K--SKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEK 119 (248)
T ss_dssp CEEEEEE---HHHHHHHHHTC--S--STTCEEEEEECSSEEEEEEEETTTTEEEEEEEECEE
T ss_pred CeEEEEE---HHHHHHHHhhc--C--CCEEEEEEeCCCCeEEEEEEeCCCCEEEEEEEEccc
Confidence 3566666 34455556532 0 235888887666888899987 777777766
No 10
>1nla_A Transcriptional repressor ARC; 3(10) helix, beta-ribbon, beta-sheet, structural switching; NMR {Enterobacteria phage P22} SCOP: a.43.1.1
Probab=18.32 E-value=21 Score=24.97 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=14.8
Q ss_pred ceeEEecCcchHHHHHHHH
Q 027762 21 EQFILRVPPSVAERIDRLL 39 (219)
Q Consensus 21 eQfILRlPp~~A~~vr~~l 39 (219)
.+|.||||+++-+.|...-
T Consensus 8 ~~f~lRlp~eLh~~l~~~A 26 (64)
T 1nla_A 8 PQFLNRWPREVLDLVRKVA 26 (64)
T ss_dssp CGGGGSSCHHHHHHHHHHH
T ss_pred CceEeeCCHHHHHHHHHHH
Confidence 5899999999877776543
Done!