Query 027762
Match_columns 219
No_of_seqs 139 out of 241
Neff 4.4
Searched_HMMs 13730
Date Tue Mar 26 01:22:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027762.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027762hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mnta_ a.43.1.1 (A:) Mnt repr 57.6 1.8 0.00013 29.3 1.3 22 20-41 4-25 (66)
2 d1vpka2 d.131.1.1 (A:121-243) 35.7 28 0.002 24.4 5.0 47 25-77 71-117 (123)
3 d1v5va1 b.44.2.1 (A:313-401) G 33.2 16 0.0012 24.5 3.1 23 58-80 55-77 (89)
4 d1ok7a2 d.131.1.1 (A:123-244) 31.8 17 0.0012 25.4 3.2 44 27-77 73-116 (122)
5 d1pj5a1 b.44.2.1 (A:743-830) N 31.2 17 0.0012 24.3 3.0 23 58-80 56-78 (88)
6 d1vloa1 b.44.2.1 (A:278-367) G 26.8 23 0.0016 23.6 3.0 24 58-81 57-80 (90)
7 d1wosa1 b.44.2.1 (A:279-361) G 23.6 11 0.00079 24.8 0.7 23 58-80 55-77 (83)
8 d2z1ea2 d.139.1.1 (A:156-334) 16.3 63 0.0046 22.8 3.8 57 20-80 117-175 (179)
9 d1rwza1 d.131.1.2 (A:1-122) Pr 14.9 1.3E+02 0.0094 20.6 5.2 55 18-79 60-114 (122)
10 d1ud9a1 d.131.1.2 (A:1-119) Pr 13.9 1.6E+02 0.012 20.0 5.5 55 19-80 61-118 (119)
No 1
>d1mnta_ a.43.1.1 (A:) Mnt repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=57.55 E-value=1.8 Score=29.31 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=16.9
Q ss_pred cceeEEecCcchHHHHHHHHhc
Q 027762 20 EEQFILRVPPSVAERIDRLLSE 41 (219)
Q Consensus 20 EeQfILRlPp~~A~~vr~~l~~ 41 (219)
..||.||||.++-+.|...-+.
T Consensus 4 ~~qf~lR~P~~lr~~I~~~Ak~ 25 (66)
T d1mnta_ 4 DPHFNFRMPMEVREKLKFRAEA 25 (66)
T ss_dssp SCCCEEECCHHHHHHHHHTHHH
T ss_pred CccceeeCCHHHHHHHHHHHHH
Confidence 3599999999988888654443
No 2
>d1vpka2 d.131.1.1 (A:121-243) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}
Probab=35.70 E-value=28 Score=24.41 Aligned_cols=47 Identities=11% Similarity=0.318 Sum_probs=33.3
Q ss_pred EecCcchHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECCeecceeecc
Q 027762 25 LRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77 (219)
Q Consensus 25 LRlPp~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~~~y~a~LVD 77 (219)
+=+|-.....|.+.+.... ...+.|.+ ++.++.|.+++..+..+|+|
T Consensus 71 ~iiP~k~l~el~k~l~~~~----~~~v~i~~--~~~~i~~~~~~~~~~srlie 117 (123)
T d1vpka2 71 FLLSLKSMKEVQNVLDNTT----EPTITVRY--DGRRVSLSTNDVETVMRVVD 117 (123)
T ss_dssp EEEEHHHHHHHHHHHHTCC----CSEEEEEE--CSSEEEEECSSEEEEEECCS
T ss_pred EEEeechhhHHHhhhcccc----cceEEEEE--CCCEEEEEECCEEEEEEeeC
Confidence 3346566677777776542 22455555 68889999999999999887
No 3
>d1v5va1 b.44.2.1 (A:313-401) Glycine cleavage system T protein, GcvT {Pyrococcus horikoshii [TaxId: 53953]}
Probab=33.22 E-value=16 Score=24.54 Aligned_cols=23 Identities=13% Similarity=0.034 Sum_probs=20.4
Q ss_pred CCceEEEEECCeecceeeccCCe
Q 027762 58 DGRSGTFVIGNDHFPVSLMDLPC 80 (219)
Q Consensus 58 D~R~~~v~i~~~~y~a~LVDLPc 80 (219)
.+....|.++|..+.|+++++|-
T Consensus 55 ~g~~v~v~i~g~~~~a~v~~~Pf 77 (89)
T d1v5va1 55 PGIEIEVEIRGQRKKAVTVTPPF 77 (89)
T ss_dssp TTCEEEEEETTEEEEEEEECSCS
T ss_pred CCCEEEEEECCeEEEEEEECCCC
Confidence 46778899999999999999994
No 4
>d1ok7a2 d.131.1.1 (A:123-244) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=31.82 E-value=17 Score=25.43 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=31.9
Q ss_pred cCcchHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECCeecceeecc
Q 027762 27 VPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMD 77 (219)
Q Consensus 27 lPp~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~~~y~a~LVD 77 (219)
+|...+..+.+++... ...+.|.+. ..++.|.+++..+..+|+|
T Consensus 73 ip~k~l~el~~~l~~~-----~~~v~i~~~--~~~i~f~~~~~~~~srlIe 116 (122)
T d1ok7a2 73 VPRKGVIELMRMLDGG-----DNPLRVQIG--SNNIRAHVGDFIFTSKLVD 116 (122)
T ss_dssp EEHHHHHHHHHTCCCC-----SSEEEEEEE--SSEEEEEETTEEEEEECCC
T ss_pred cchhHHHHHHHhhccC-----cceEEEEec--CCeEEEEECCEEEEEEEec
Confidence 6777666666655432 234777775 5689999999999999886
No 5
>d1pj5a1 b.44.2.1 (A:743-830) N,N-dimethylglycine oxidase, C-terminal domain {Arthrobacter globiformis [TaxId: 1665]}
Probab=31.18 E-value=17 Score=24.34 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.6
Q ss_pred CCceEEEEECCeecceeeccCCe
Q 027762 58 DGRSGTFVIGNDHFPVSLMDLPC 80 (219)
Q Consensus 58 D~R~~~v~i~~~~y~a~LVDLPc 80 (219)
.+-...|.+.|+.|+|+++++|-
T Consensus 56 ~g~~~~V~~~g~~~~a~v~~~P~ 78 (88)
T d1pj5a1 56 VGDSVDIEYFGRRITATVTEDPL 78 (88)
T ss_dssp TTCEEEEEETTEEEEEEEECSCS
T ss_pred CCCEEEEEECCEEEEEEEEccCC
Confidence 35667889999999999999984
No 6
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein, GcvT {Escherichia coli [TaxId: 562]}
Probab=26.80 E-value=23 Score=23.64 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.9
Q ss_pred CCceEEEEECCeecceeeccCCee
Q 027762 58 DGRSGTFVIGNDHFPVSLMDLPCV 81 (219)
Q Consensus 58 D~R~~~v~i~~~~y~a~LVDLPcI 81 (219)
-+..+.|.++|+.+.|.++++|=+
T Consensus 57 ~g~~~~v~v~g~~~~a~v~~~PF~ 80 (90)
T d1vloa1 57 IGETAIVQIRNREMPVKVTKPVFV 80 (90)
T ss_dssp CCSEEEEEETTEEEEEEEECSCCE
T ss_pred CCCEEEEEECCEEEEEEEECCCcc
Confidence 367788999999999999999965
No 7
>d1wosa1 b.44.2.1 (A:279-361) Glycine cleavage system T protein, GcvT {Thermotoga maritima [TaxId: 2336]}
Probab=23.60 E-value=11 Score=24.78 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=18.3
Q ss_pred CCceEEEEECCeecceeeccCCe
Q 027762 58 DGRSGTFVIGNDHFPVSLMDLPC 80 (219)
Q Consensus 58 D~R~~~v~i~~~~y~a~LVDLPc 80 (219)
.+....+.++|+.+.|++++||-
T Consensus 55 ~~~~~~~~~~g~~~~a~v~~~PF 77 (83)
T d1wosa1 55 GDQLGVVFPGGKLVEALVVKKPF 77 (83)
T ss_dssp TCEEEEEETTTEEEEEEEECSCS
T ss_pred CCeEEEEEECCeEEEEEEECCCC
Confidence 34555667789999999999995
No 8
>d2z1ea2 d.139.1.1 (A:156-334) Hydrogenase expression/formation protein HypE {Thermococcus kodakaraensis [TaxId: 311400]}
Probab=16.28 E-value=63 Score=22.84 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=35.2
Q ss_pred cceeEEecCcchHHHHHHHHhcCCCCCCCCCce-E-EEecCCceEEEEECCeecceeeccCCe
Q 027762 20 EEQFILRVPPSVAERIDRLLSENESSEEDKSLD-L-SFCEDGRSGTFVIGNDHFPVSLMDLPC 80 (219)
Q Consensus 20 EeQfILRlPp~~A~~vr~~l~~~~~~~~~~~l~-i-~f~~D~R~~~v~i~~~~y~a~LVDLPc 80 (219)
+.++++-+|++.++.+.+.++.... ...+. | ++. ++..+.|.+++..-.-+++|+|-
T Consensus 117 ~g~ll~~v~~~~~~~i~~~l~~~~~---g~~~~vIG~Vt-~~~~~~v~l~~~~g~~r~ld~p~ 175 (179)
T d2z1ea2 117 EGKVVMVVAREYAEEALEAMRKTEK---GRNAAIIGEVI-ADYRGKVLLETGIGGKRFMEPPE 175 (179)
T ss_dssp SSCCEEEECGGGHHHHHHHHHTSST---TTTCEEEEEEE-SSSTTCEEEECTTSCEEECCCSS
T ss_pred ccceeeEeCHHHHHHHHHHHHhCCC---CCCeEEEEEEE-cCCCCEEEEEcCCCCEEECCCCC
Confidence 3478999999998888887764321 11121 2 244 34445566666555667788873
No 9
>d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=14.85 E-value=1.3e+02 Score=20.64 Aligned_cols=55 Identities=18% Similarity=0.236 Sum_probs=36.8
Q ss_pred cccceeEEecCcchHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECCeecceeeccCC
Q 027762 18 LMEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGNDHFPVSLMDLP 79 (219)
Q Consensus 18 ~iEeQfILRlPp~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~~~y~a~LVDLP 79 (219)
.+++...|-+. .+.+.++++... .++.+.+..+ ++....+.++|..|.-+|+|.=
T Consensus 60 ~~~~~~~iGv~---~~~l~kilk~~~---~~d~l~l~~~-~~~~l~i~~~~~~f~l~LlD~~ 114 (122)
T d1rwza1 60 NIDEEKTIGVD---MDRIFDISKSIS---TKDLVELIVE-DESTLKVKFGSVEYKVALIDPS 114 (122)
T ss_dssp EESSCEEEEEE---HHHHHHHHTTSC---TTSEEEEEES-SSSEEEEEETTEEEEEECBCGG
T ss_pred ecCCCEEEEEE---HHHHHHHHhhCC---CCCEEEEEEc-CCCEEEEEEeccEEEEeCcccc
Confidence 34444555443 456677776654 3456777765 5567889999999998988853
No 10
>d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=13.95 E-value=1.6e+02 Score=20.00 Aligned_cols=55 Identities=11% Similarity=0.203 Sum_probs=34.7
Q ss_pred ccceeEEecCcchHHHHHHHHhcCCCCCCCCCceEEEecCCceEEEEECC---eecceeeccCCe
Q 027762 19 MEEQFILRVPPSVAERIDRLLSENESSEEDKSLDLSFCEDGRSGTFVIGN---DHFPVSLMDLPC 80 (219)
Q Consensus 19 iEeQfILRlPp~~A~~vr~~l~~~~~~~~~~~l~i~f~~D~R~~~v~i~~---~~y~a~LVDLPc 80 (219)
+++.+.|-+. .+.+.++++... .++.|.+..+ ++....+.+.| +.|.-.|+|+++
T Consensus 61 ~~~~~~igv~---~~~l~kilk~~~---~~d~l~l~~~-~~~~l~i~~~~~~~r~f~l~lidi~~ 118 (119)
T d1ud9a1 61 VPEEFKFGFN---TQYMSKLLKAAK---RKEEIIIDAD-SPEVVKLTLSGALNRVFNVNNIEVLP 118 (119)
T ss_dssp CSSCEEEEEE---HHHHHHHHTTCC---SCCCEEEEEE-ETTEEEEEECSSSCEEEEEECCCCCC
T ss_pred cCCCEEEEEE---HHHHHHHHhhCC---CCCEEEEEeC-CCCEEEEEEECCceEEEEEEeecccC
Confidence 4445555443 445666676664 3457777765 45667777764 468888888865
Done!