BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027763
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 112/235 (47%), Gaps = 23/235 (9%)
Query: 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKT---KKPPQPSDS---V 60
+ HV+++PYP QGHINP F+ AK L +G IT T + +K + P+ D
Sbjct: 7 RKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDF 66
Query: 61 QIDTISDGYD--DGGFSEAESIDAYLQNMEVAGLKTLAELITKYKSSSN--PIDCVVYDA 116
++I DG +G ++ + Q++ LK EL+T+ S+N P+ C+V D
Sbjct: 67 NFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDC 126
Query: 117 FLYWALDVAKGFGLFSAAFFTQT-CA-VNFIYY--LVHHGLLKLPVSS--------TPVS 164
+ + + A+ F L + +F+ + C+ +N +++ V G++ S T V
Sbjct: 127 CMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVD 186
Query: 165 -IPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQV 218
IPG+ L+D+ FI E + ++ +L+NTF +LES V
Sbjct: 187 WIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 94/233 (40%), Gaps = 32/233 (13%)
Query: 1 MEEKKIHRAHVLIVPYPSQGHINPTFQFAKRLAS-KGLKITLAITNFIYKTKKPPQPSDS 59
MEE K HV I+P P GH+ P +FAKRL GL +T F+ + PP +
Sbjct: 1 MEESKT--PHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVT-----FVIAGEGPPSKAQR 53
Query: 60 VQIDTISDG--------YDDGGFSEAESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDC 111
+D++ D S + I++ + L ++ +
Sbjct: 54 TVLDSLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTA 113
Query: 112 VVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHHGLLKLPVSSTPVSIPGMPLL 171
+V D F A DVA F + F+ T N + + +H LP VS L
Sbjct: 114 LVVDLFGTDAFDVAVEFHVPPYIFYPTTA--NVLSFFLH-----LPKLDETVSCEFRELT 166
Query: 172 ELQDMPSFIGVQGQ---YPAY------FEMVLNQFSNADRADLVLVNTFYKLE 215
E +P + V G+ PA ++ +L+ A+ +LVNTF++LE
Sbjct: 167 EPLMLPGCVPVAGKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELE 219
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 98 LITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHHGLLKLP 157
++ + P+ C+V DAF+++A D+A G+ F+T + + K+
Sbjct: 102 MVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIG 161
Query: 158 VSSTPVS-------IPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNA-DRADLVLVN 209
VS IPGM + +D+ I V G + F +L++ +A V +N
Sbjct: 162 VSGIQGREDELLNFIPGMSKVRFRDLQEGI-VFGNLNSLFSRMLHRMGQVLPKATAVFIN 220
Query: 210 TFYKLESQVS 219
+F +L+ ++
Sbjct: 221 SFEELDDSLT 230
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 22/217 (10%)
Query: 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSD----SVQIDTI 65
HV ++ +P H P K++A++ K+T + S+ +++ +
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNV 74
Query: 66 SDGYDDGGFSEA---ESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWAL 122
DG G S E I +++ M+ + E + + + I C+V DAF ++
Sbjct: 75 HDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAE---TGKNITCLVTDAFFWFGA 131
Query: 123 DVAKGFGLFSAAFFTQTCAVNFIYYLVHHGLLKLPVSSTPVS-------IPGMPLLELQD 175
D+A+ + T + + V+ L++ S V +PG P L+ D
Sbjct: 132 DLAEEMHAKWVPLW--TAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPGFPELKASD 189
Query: 176 MPSFIGVQGQYPAYFEMVLNQFS-NADRADLVLVNTF 211
+P GV F +L++ RA+ V +N+F
Sbjct: 190 LPE--GVIKDIDVPFATMLHKMGLELPRANAVAINSF 224
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 424
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45
H+ P GH+NP+ + L ++G +++ AIT+
Sbjct: 14 HISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITD 49
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43
AH+ + + GH+NP+ + + L ++G ++T AI
Sbjct: 8 AHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAI 42
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 46/235 (19%)
Query: 8 RAHVLIVPYPSQGHINPTFQFAKRLAS--KGLKITLAITNFIYKTKKPPQPSDSVQIDTI 65
+ ++ +P P GH+ +FAK L + K L IT ++ K P P I ++
Sbjct: 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYIT------VFCIKFPGMPFADSYIKSV 62
Query: 66 SDGYDDGGFSEAESID----AYLQNMEVAGLKTLAELITKYKSS-----SNPIDCVVYDA 116
+ ++ L++ E L L LI K++ SN + +V D
Sbjct: 63 LASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDF 122
Query: 117 FLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLV----------------HHGLLKLPVSS 160
F +DV FG+ S F T V F+ ++ H LL +P S
Sbjct: 123 FCVSMIDVGNEFGIPSYLFLTSN--VGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGIS 180
Query: 161 TPVSIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLE 215
V +P + G Y AY+++ +F + ++VNTF LE
Sbjct: 181 NQVPSNVLP-------DACFNKDGGYIAYYKLA-ERFRDTKG---IIVNTFSDLE 224
>pdb|3AKJ|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKJ|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|C Chain C, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKK|D Chain D, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|A Chain A, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|B Chain B, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|C Chain C, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
pdb|3AKL|D Chain D, Crystal Structure Of A Helicobacter Pylori Proinflammatory
Kinase Ctka
Length = 325
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 22 INPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESID 81
INP F + G KI+L N +Y K PP+PS ++ Y +G FSE +
Sbjct: 11 INPKKGFG---GANGNKISLFYNNELYMVKFPPKPSTHKEM-----SYTNGCFSEY--VA 60
Query: 82 AYLQNMEVAGLKTLAELITKYKS 104
++ N GLK L+ YK+
Sbjct: 61 CHIVN--SLGLKVQETLLGTYKN 81
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 90/235 (38%), Gaps = 46/235 (19%)
Query: 8 RAHVLIVPYPSQGHINPTFQFAKRLAS--KGLKITLAITNFIYKTKKPPQPSDSVQIDTI 65
+ ++ +P P GH+ +FAK L + K L IT ++ K P P I ++
Sbjct: 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYIT------VFCIKFPGMPFADSYIKSV 62
Query: 66 SDGYDDGGFSEAESID----AYLQNMEVAGLKTLAELITKYKSS-----SNPIDCVVYDA 116
+ ++ L++ E L L LI K++ SN + +V D
Sbjct: 63 LASQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDF 122
Query: 117 FLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLV----------------HHGLLKLPVSS 160
F +DV FG+ S F T V F+ ++ H LL +P S
Sbjct: 123 FCVSMIDVGNEFGIPSYLFLTSN--VGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIPGIS 180
Query: 161 TPVSIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLE 215
V +P + G Y AY+++ +F + ++VNTF LE
Sbjct: 181 NQVPSNVLP-------DACFNKDGGYIAYYKLA-ERFRDTKG---IIVNTFSDLE 224
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 10/116 (8%)
Query: 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGY 69
H+L GH+ P+ LA +G +IT +T ++ + ++ V + D +
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITY-VTTPLFADEVKAAGAEVVLYKSEFDTF 64
Query: 70 DDGGFSEAESIDAYLQ----NMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWA 121
+ E + L VA L+ E + NP D VVYD F + A
Sbjct: 65 HVPEVVKQEDAETQLHLVYVRENVAILRAAEEAL-----GDNPPDLVVYDVFPFIA 115
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 415
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKIT 40
H AH+LIV S G I PT L +G +++
Sbjct: 19 HXAHLLIVNVASHGLILPTLTVVTELVRRGHRVS 52
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKIT 40
H AH+LIV S G I PT L +G +++
Sbjct: 19 HXAHLLIVNVASHGLILPTLTVVTELVRRGHRVS 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,384,725
Number of Sequences: 62578
Number of extensions: 245953
Number of successful extensions: 557
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 13
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)