Query 027763
Match_columns 219
No_of_seqs 251 out of 1562
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 14:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027763.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027763hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02555 limonoid glucosyltran 100.0 7.6E-41 1.7E-45 292.1 22.7 215 1-217 1-228 (480)
2 PLN02173 UDP-glucosyl transfer 100.0 2.2E-40 4.7E-45 287.1 22.1 205 7-217 4-208 (449)
3 PLN02152 indole-3-acetate beta 100.0 3.7E-38 7.9E-43 273.6 20.4 203 8-217 3-211 (455)
4 PLN02410 UDP-glucoronosyl/UDP- 100.0 6.8E-38 1.5E-42 272.3 22.0 210 1-217 1-218 (451)
5 PLN02863 UDP-glucoronosyl/UDP- 100.0 5.3E-38 1.1E-42 274.7 19.9 213 1-217 1-229 (477)
6 PLN02562 UDP-glycosyltransfera 100.0 1.6E-37 3.5E-42 270.3 21.7 207 7-217 5-220 (448)
7 PLN03004 UDP-glycosyltransfera 100.0 2.7E-36 5.9E-41 261.7 20.2 206 9-217 4-223 (451)
8 PLN02210 UDP-glucosyl transfer 100.0 7.1E-36 1.5E-40 260.3 21.1 208 1-217 1-214 (456)
9 PLN00164 glucosyltransferase; 100.0 4.2E-36 9.2E-41 263.2 18.8 203 7-217 2-221 (480)
10 PLN02992 coniferyl-alcohol glu 100.0 7.7E-36 1.7E-40 260.3 19.4 202 7-217 4-215 (481)
11 PLN02670 transferase, transfer 100.0 5.4E-36 1.2E-40 260.9 18.1 203 7-217 5-228 (472)
12 PLN02534 UDP-glycosyltransfera 100.0 1.1E-35 2.5E-40 260.0 19.8 203 7-217 7-230 (491)
13 PLN02448 UDP-glycosyltransfera 100.0 4.9E-35 1.1E-39 256.0 21.3 208 4-217 6-223 (459)
14 PLN03015 UDP-glucosyl transfer 100.0 3.2E-35 7E-40 255.3 19.8 203 9-217 4-219 (470)
15 PLN02554 UDP-glycosyltransfera 100.0 7.4E-35 1.6E-39 255.9 19.8 201 8-218 2-226 (481)
16 PLN02207 UDP-glycosyltransfera 100.0 1.8E-34 4E-39 251.1 21.2 206 8-217 3-226 (468)
17 PLN02167 UDP-glycosyltransfera 100.0 8.1E-34 1.8E-38 249.0 19.7 206 8-217 3-230 (475)
18 PLN02764 glycosyltransferase f 100.0 9.9E-34 2.1E-38 245.2 19.4 197 6-217 3-214 (453)
19 PLN02208 glycosyltransferase f 100.0 2.4E-33 5.1E-38 243.3 19.4 195 7-217 3-208 (442)
20 PLN00414 glycosyltransferase f 100.0 4.4E-33 9.5E-38 241.9 18.0 193 7-217 3-207 (446)
21 PLN03007 UDP-glucosyltransfera 100.0 8.5E-32 1.8E-36 236.7 20.5 204 7-217 4-232 (482)
22 cd03784 GT1_Gtf_like This fami 99.7 3.9E-16 8.6E-21 134.6 8.9 126 9-140 1-136 (401)
23 TIGR01426 MGT glycosyltransfer 99.6 4.9E-15 1.1E-19 127.6 10.3 119 14-138 1-122 (392)
24 KOG1192 UDP-glucuronosyl and U 99.5 1.7E-14 3.7E-19 127.7 1.7 143 8-151 5-158 (496)
25 PF03033 Glyco_transf_28: Glyc 99.3 3.2E-12 6.9E-17 94.3 5.9 122 11-139 1-131 (139)
26 PHA03392 egt ecdysteroid UDP-g 99.0 7E-09 1.5E-13 92.3 13.1 130 9-140 21-169 (507)
27 PF00201 UDPGT: UDP-glucoronos 98.8 1.2E-10 2.6E-15 103.4 -4.0 122 10-136 2-147 (500)
28 PF13528 Glyco_trans_1_3: Glyc 98.5 1.8E-06 3.9E-11 72.1 12.4 123 9-141 1-126 (318)
29 COG1819 Glycosyl transferases, 98.4 2.6E-07 5.7E-12 80.1 5.1 55 8-66 1-55 (406)
30 TIGR00661 MJ1255 conserved hyp 98.4 3.5E-06 7.5E-11 70.9 10.5 120 11-139 2-123 (321)
31 PRK12446 undecaprenyldiphospho 98.0 0.0002 4.3E-09 61.1 13.3 119 10-141 3-126 (352)
32 COG0707 MurG UDP-N-acetylgluco 97.6 0.002 4.3E-08 55.1 13.3 123 10-143 2-128 (357)
33 cd03785 GT1_MurG MurG is an N- 97.5 0.0024 5.3E-08 53.8 12.5 115 10-135 1-118 (350)
34 TIGR01133 murG undecaprenyldip 97.3 0.0059 1.3E-07 51.4 12.9 112 10-135 2-119 (348)
35 PRK00726 murG undecaprenyldiph 97.1 0.012 2.6E-07 49.9 12.7 116 9-135 2-120 (357)
36 TIGR00215 lpxB lipid-A-disacch 96.9 0.0077 1.7E-07 52.1 9.6 37 9-46 6-42 (385)
37 cd03818 GT1_ExpC_like This fam 96.9 0.033 7.2E-07 48.0 13.5 104 24-136 12-116 (396)
38 COG4671 Predicted glycosyl tra 96.0 0.063 1.4E-06 45.4 8.9 58 7-67 8-69 (400)
39 cd03816 GT1_ALG1_like This fam 95.9 0.29 6.2E-06 42.7 13.3 58 8-66 3-60 (415)
40 cd03823 GT1_ExpE7_like This fa 95.8 0.25 5.4E-06 40.8 12.4 30 19-48 15-44 (359)
41 PRK10307 putative glycosyl tra 95.7 0.27 5.8E-06 42.6 12.5 22 25-46 21-42 (412)
42 TIGR03590 PseG pseudaminic aci 95.7 0.059 1.3E-06 44.5 7.8 48 16-67 11-61 (279)
43 cd03800 GT1_Sucrose_synthase T 95.7 0.15 3.2E-06 43.3 10.6 108 19-135 21-130 (398)
44 PRK00025 lpxB lipid-A-disaccha 95.6 0.12 2.7E-06 44.0 9.9 36 9-45 2-37 (380)
45 PF13579 Glyco_trans_4_4: Glyc 95.2 0.054 1.2E-06 39.5 5.5 96 24-136 6-103 (160)
46 cd03794 GT1_wbuB_like This fam 95.1 0.57 1.2E-05 38.9 12.0 30 19-48 14-43 (394)
47 PLN00142 sucrose synthase 95.0 0.39 8.5E-06 45.4 11.6 105 27-137 319-439 (815)
48 TIGR02470 sucr_synth sucrose s 95.0 1.2 2.5E-05 42.2 14.5 120 9-135 256-414 (784)
49 TIGR02468 sucrsPsyn_pln sucros 94.6 0.75 1.6E-05 44.7 12.5 117 20-137 196-341 (1050)
50 TIGR03449 mycothiol_MshA UDP-N 94.3 0.95 2.1E-05 38.9 11.8 112 18-137 19-132 (405)
51 PF12000 Glyco_trans_4_3: Gkyc 94.0 1.3 2.8E-05 33.8 10.5 92 34-136 1-95 (171)
52 PF13477 Glyco_trans_4_2: Glyc 93.9 1.3 2.8E-05 31.8 10.3 99 11-134 2-104 (139)
53 cd03805 GT1_ALG2_like This fam 93.7 1.9 4.1E-05 36.6 12.4 37 10-46 2-40 (392)
54 cd03808 GT1_cap1E_like This fa 93.1 1.9 4.2E-05 35.2 11.3 53 11-66 2-54 (359)
55 PF04007 DUF354: Protein of un 92.5 0.85 1.8E-05 38.8 8.2 105 20-142 11-116 (335)
56 TIGR02472 sucr_P_syn_N sucrose 90.8 4 8.6E-05 35.8 11.0 108 20-136 27-144 (439)
57 COG3980 spsG Spore coat polysa 89.2 0.66 1.4E-05 38.2 4.3 40 10-49 2-45 (318)
58 cd03796 GT1_PIG-A_like This fa 88.9 7.3 0.00016 33.5 11.0 100 20-135 15-119 (398)
59 cd04962 GT1_like_5 This family 88.7 0.63 1.4E-05 39.2 4.2 37 10-46 2-39 (371)
60 PRK13609 diacylglycerol glucos 88.3 0.79 1.7E-05 39.2 4.6 38 8-45 4-42 (380)
61 PLN02275 transferase, transfer 87.5 17 0.00037 31.0 13.9 124 8-138 6-135 (371)
62 cd03819 GT1_WavL_like This fam 87.2 6.4 0.00014 32.7 9.4 96 20-137 11-109 (355)
63 cd02070 corrinoid_protein_B12- 86.5 4.6 9.9E-05 31.6 7.6 39 8-46 82-120 (201)
64 cd03814 GT1_like_2 This family 86.3 1.3 2.7E-05 36.7 4.6 29 19-47 14-42 (364)
65 PF13439 Glyco_transf_4: Glyco 86.3 0.9 2E-05 33.4 3.4 29 20-48 13-41 (177)
66 cd03801 GT1_YqgM_like This fam 85.4 13 0.00028 30.2 10.3 30 19-48 14-43 (374)
67 cd02067 B12-binding B12 bindin 85.1 1.5 3.3E-05 30.9 4.0 36 10-45 1-36 (119)
68 PRK02261 methylaspartate mutas 84.2 2.4 5.2E-05 31.1 4.7 43 7-49 2-44 (137)
69 PLN02871 UDP-sulfoquinovose:DA 84.1 2.3 5E-05 37.5 5.5 41 6-46 56-101 (465)
70 cd03817 GT1_UGDG_like This fam 83.1 2.1 4.5E-05 35.3 4.6 31 17-47 12-42 (374)
71 cd04951 GT1_WbdM_like This fam 81.2 1.9 4.1E-05 35.9 3.6 28 19-46 12-39 (360)
72 cd04955 GT1_like_6 This family 80.9 4.8 0.0001 33.5 6.0 45 20-66 16-60 (363)
73 PLN02846 digalactosyldiacylgly 79.7 3.3 7.1E-05 36.8 4.7 40 7-46 3-47 (462)
74 PRK05749 3-deoxy-D-manno-octul 79.2 12 0.00026 32.5 8.1 98 10-136 51-154 (425)
75 cd03806 GT1_ALG11_like This fa 78.1 41 0.0009 29.3 11.1 107 21-137 16-137 (419)
76 cd03821 GT1_Bme6_like This fam 77.3 4.3 9.2E-05 33.4 4.6 31 18-48 13-43 (375)
77 cd03825 GT1_wcfI_like This fam 76.6 4.6 9.9E-05 33.6 4.6 38 10-47 2-41 (365)
78 cd03802 GT1_AviGT4_like This f 75.2 5.7 0.00012 32.6 4.8 27 20-46 20-46 (335)
79 PRK08506 replicative DNA helic 74.8 19 0.00041 32.2 8.1 39 11-49 195-233 (472)
80 PF02441 Flavoprotein: Flavopr 74.4 7.1 0.00015 28.0 4.5 39 10-49 2-40 (129)
81 PRK00654 glgA glycogen synthas 74.3 5.5 0.00012 35.3 4.7 27 20-46 18-44 (466)
82 PF02310 B12-binding: B12 bind 74.1 7.6 0.00017 27.1 4.6 37 10-46 2-38 (121)
83 PF09314 DUF1972: Domain of un 74.1 7 0.00015 30.3 4.6 42 23-66 21-62 (185)
84 cd01635 Glycosyltransferase_GT 73.6 5.2 0.00011 30.4 3.9 26 18-43 12-37 (229)
85 PRK10422 lipopolysaccharide co 73.2 56 0.0012 27.6 10.8 107 7-134 4-113 (352)
86 KOG2941 Beta-1,4-mannosyltrans 72.9 13 0.00029 31.8 6.2 63 2-67 6-70 (444)
87 cd03811 GT1_WabH_like This fam 72.4 7.3 0.00016 31.6 4.7 31 18-48 11-41 (353)
88 TIGR03492 conserved hypothetic 71.7 49 0.0011 28.7 9.8 103 20-135 8-119 (396)
89 cd03820 GT1_amsD_like This fam 70.1 9 0.00019 31.0 4.8 30 19-48 13-42 (348)
90 TIGR02370 pyl_corrinoid methyl 69.8 10 0.00022 29.5 4.8 43 7-49 83-125 (197)
91 cd03795 GT1_like_4 This family 69.4 8.9 0.00019 31.7 4.7 31 18-48 13-43 (357)
92 cd00561 CobA_CobO_BtuR ATP:cor 67.2 52 0.0011 24.8 8.3 33 10-42 4-36 (159)
93 PF04244 DPRP: Deoxyribodipyri 67.1 5.8 0.00013 31.7 2.9 27 20-46 46-72 (224)
94 cd03786 GT1_UDP-GlcNAc_2-Epime 66.7 22 0.00049 29.8 6.6 30 17-46 7-37 (363)
95 PF08660 Alg14: Oligosaccharid 66.7 43 0.00094 25.4 7.5 29 17-45 6-35 (170)
96 cd02071 MM_CoA_mut_B12_BD meth 66.4 12 0.00026 26.6 4.2 38 10-47 1-38 (122)
97 cd02069 methionine_synthase_B1 65.8 13 0.00028 29.4 4.7 42 7-48 87-128 (213)
98 COG1817 Uncharacterized protei 65.8 44 0.00096 28.2 7.7 105 18-140 9-115 (346)
99 PLN02316 synthase/transferase 65.7 8.1 0.00018 37.8 4.0 40 7-46 586-631 (1036)
100 COG2185 Sbm Methylmalonyl-CoA 65.4 12 0.00025 27.7 4.0 38 7-44 11-48 (143)
101 TIGR02095 glgA glycogen/starch 64.0 12 0.00027 33.0 4.7 27 20-46 18-44 (473)
102 PF12146 Hydrolase_4: Putative 63.4 16 0.00035 23.8 4.1 33 10-42 17-49 (79)
103 PRK14089 ipid-A-disaccharide s 63.4 11 0.00023 32.3 4.0 35 107-141 75-114 (347)
104 PF04127 DFP: DNA / pantothena 62.9 8 0.00017 29.9 2.9 21 26-46 33-53 (185)
105 PRK06321 replicative DNA helic 62.8 54 0.0012 29.3 8.4 39 11-49 229-268 (472)
106 TIGR00236 wecB UDP-N-acetylglu 62.4 58 0.0013 27.5 8.4 110 10-135 2-116 (365)
107 cd03791 GT1_Glycogen_synthase_ 62.4 7.5 0.00016 34.2 3.0 24 23-46 20-43 (476)
108 PF07894 DUF1669: Protein of u 62.2 9.3 0.0002 31.6 3.2 47 93-139 133-184 (284)
109 COG1618 Predicted nucleotide k 61.8 70 0.0015 24.5 8.2 56 7-66 4-59 (179)
110 COG2910 Putative NADH-flavin r 61.1 12 0.00027 29.1 3.5 33 10-46 2-34 (211)
111 PF08323 Glyco_transf_5: Starc 60.7 7.2 0.00016 31.5 2.4 24 23-46 20-43 (245)
112 COG1484 DnaC DNA replication p 60.1 9 0.0002 31.2 2.8 44 9-52 106-149 (254)
113 COG1797 CobB Cobyrinic acid a, 59.1 12 0.00025 33.0 3.4 30 11-40 4-33 (451)
114 PRK08305 spoVFB dipicolinate s 58.2 18 0.00039 28.3 4.1 38 10-48 7-45 (196)
115 cd01018 ZntC Metal binding pro 58.1 44 0.00096 27.2 6.6 50 94-145 205-256 (266)
116 COG0299 PurN Folate-dependent 57.4 24 0.00053 27.5 4.6 46 94-139 13-60 (200)
117 PF06506 PrpR_N: Propionate ca 56.2 26 0.00057 26.6 4.7 113 20-141 17-155 (176)
118 PF01975 SurE: Survival protei 55.6 13 0.00028 29.1 2.9 27 24-50 15-41 (196)
119 PRK01021 lpxB lipid-A-disaccha 53.4 60 0.0013 30.0 7.1 46 94-141 298-348 (608)
120 cd03798 GT1_wlbH_like This fam 53.4 23 0.0005 28.8 4.4 31 18-48 13-43 (377)
121 cd03799 GT1_amsK_like This is 52.6 30 0.00065 28.4 5.0 26 21-46 13-38 (355)
122 PF02951 GSH-S_N: Prokaryotic 52.5 35 0.00076 24.3 4.5 38 10-47 2-42 (119)
123 PRK07773 replicative DNA helic 50.9 77 0.0017 30.8 7.9 40 11-50 220-260 (886)
124 TIGR02852 spore_dpaB dipicolin 50.8 23 0.00051 27.4 3.7 38 10-47 2-39 (187)
125 PF10087 DUF2325: Uncharacteri 50.6 40 0.00087 22.8 4.5 36 108-143 48-89 (97)
126 COG4081 Uncharacterized protei 50.5 30 0.00064 25.2 3.8 38 11-48 6-44 (148)
127 PF00070 Pyr_redox: Pyridine n 50.4 25 0.00054 22.6 3.3 24 24-47 10-33 (80)
128 cd03812 GT1_CapH_like This fam 48.8 20 0.00044 29.6 3.3 31 17-47 10-40 (358)
129 TIGR02193 heptsyl_trn_I lipopo 48.1 34 0.00075 28.3 4.6 53 10-65 1-56 (319)
130 cd01425 RPS2 Ribosomal protein 48.0 61 0.0013 25.1 5.6 32 107-138 126-159 (193)
131 PRK07313 phosphopantothenoylcy 47.8 29 0.00064 26.7 3.8 39 10-49 3-41 (182)
132 PRK09620 hypothetical protein; 47.2 21 0.00045 28.6 3.0 21 26-46 33-53 (229)
133 PLN02891 IMP cyclohydrolase 47.0 19 0.0004 32.6 2.8 45 21-71 31-77 (547)
134 PRK13604 luxD acyl transferase 46.6 55 0.0012 27.6 5.4 33 10-42 38-70 (307)
135 TIGR03264 met_CoM_red_C methyl 46.6 30 0.00065 26.6 3.5 34 10-43 35-69 (194)
136 PF13450 NAD_binding_8: NAD(P) 46.3 25 0.00054 22.1 2.7 21 26-46 9-29 (68)
137 PRK13982 bifunctional SbtC-lik 46.1 37 0.0008 30.4 4.6 39 9-47 257-307 (475)
138 PF02684 LpxB: Lipid-A-disacch 45.3 35 0.00077 29.5 4.3 41 95-137 71-116 (373)
139 KOG1615 Phosphoserine phosphat 44.4 34 0.00074 26.9 3.6 39 93-132 91-129 (227)
140 PRK06732 phosphopantothenate-- 43.9 25 0.00055 28.0 3.0 20 26-45 30-49 (229)
141 PRK06249 2-dehydropantoate 2-r 43.4 38 0.00083 28.2 4.2 35 7-46 4-38 (313)
142 COG0052 RpsB Ribosomal protein 43.0 47 0.001 27.0 4.3 30 109-138 157-188 (252)
143 PF01210 NAD_Gly3P_dh_N: NAD-d 42.7 19 0.00041 26.7 2.0 21 26-46 12-32 (157)
144 COG1703 ArgK Putative periplas 42.6 61 0.0013 27.3 5.0 42 8-49 50-92 (323)
145 TIGR00355 purH phosphoribosyla 42.4 30 0.00065 31.2 3.4 43 23-71 11-55 (511)
146 cd03807 GT1_WbnK_like This fam 42.3 41 0.00089 27.3 4.2 31 16-46 9-39 (365)
147 cd00861 ProRS_anticodon_short 41.7 57 0.0012 21.3 4.1 34 10-43 3-38 (94)
148 COG4088 Predicted nucleotide k 41.5 34 0.00074 27.3 3.2 34 11-44 4-37 (261)
149 cd02034 CooC The accessory pro 41.2 74 0.0016 22.3 4.8 37 10-46 1-37 (116)
150 TIGR00421 ubiX_pad polyprenyl 41.1 36 0.00078 26.2 3.3 32 17-49 8-39 (181)
151 PF08026 Antimicrobial_5: Bee 40.8 4.2 9.1E-05 22.1 -1.3 22 15-36 17-38 (39)
152 TIGR00234 tyrS tyrosyl-tRNA sy 40.7 27 0.00059 30.2 2.9 34 12-46 36-72 (377)
153 cd03822 GT1_ecORF704_like This 40.6 46 0.00099 27.3 4.3 29 19-47 13-41 (366)
154 PTZ00445 p36-lilke protein; Pr 40.6 34 0.00074 27.2 3.2 28 20-47 74-102 (219)
155 cd02065 B12-binding_like B12 b 40.4 60 0.0013 22.5 4.3 35 11-45 2-36 (125)
156 PF01380 SIS: SIS domain SIS d 40.3 56 0.0012 22.7 4.2 32 17-48 61-92 (131)
157 PRK05986 cob(I)alamin adenolsy 40.2 61 0.0013 25.2 4.5 99 8-119 22-126 (191)
158 TIGR02113 coaC_strep phosphopa 40.2 38 0.00083 25.9 3.4 39 10-49 2-40 (177)
159 PF12695 Abhydrolase_5: Alpha/ 39.9 78 0.0017 22.1 4.9 30 13-42 3-32 (145)
160 COG0162 TyrS Tyrosyl-tRNA synt 39.7 34 0.00075 29.9 3.3 36 10-46 36-74 (401)
161 PF00391 PEP-utilizers: PEP-ut 39.6 47 0.001 21.6 3.3 30 108-137 30-61 (80)
162 COG1255 Uncharacterized protei 39.2 36 0.00078 24.3 2.8 22 24-45 24-45 (129)
163 PF01555 N6_N4_Mtase: DNA meth 39.0 28 0.00061 26.9 2.6 42 94-139 180-223 (231)
164 KOG2585 Uncharacterized conser 38.9 66 0.0014 28.4 4.8 36 7-45 265-302 (453)
165 PF03720 UDPG_MGDP_dh_C: UDP-g 38.7 39 0.00084 23.2 3.0 26 23-48 17-42 (106)
166 COG0467 RAD55 RecA-superfamily 38.6 78 0.0017 25.5 5.2 42 9-50 24-65 (260)
167 TIGR00679 hpr-ser Hpr(Ser) kin 38.2 2.2E+02 0.0048 23.9 7.7 50 93-143 69-120 (304)
168 PF09001 DUF1890: Domain of un 38.1 26 0.00057 25.7 2.0 28 24-51 15-42 (139)
169 TIGR03568 NeuC_NnaA UDP-N-acet 37.9 1.4E+02 0.003 25.5 6.8 114 10-137 2-125 (365)
170 PLN02939 transferase, transfer 37.5 81 0.0018 31.0 5.6 40 7-46 480-525 (977)
171 PRK05920 aromatic acid decarbo 37.4 45 0.00098 26.2 3.4 39 9-48 4-42 (204)
172 PF06925 MGDG_synth: Monogalac 37.3 1.4E+02 0.003 22.3 6.0 25 21-45 1-28 (169)
173 PF02603 Hpr_kinase_N: HPr Ser 37.1 35 0.00076 24.5 2.6 43 94-137 69-113 (127)
174 PF03853 YjeF_N: YjeF-related 36.8 39 0.00085 25.5 3.0 36 7-44 24-60 (169)
175 PLN02331 phosphoribosylglycina 36.4 81 0.0018 24.8 4.7 44 94-137 12-57 (207)
176 TIGR03087 stp1 sugar transfera 36.4 32 0.0007 29.5 2.7 32 14-46 8-40 (397)
177 PF01297 TroA: Periplasmic sol 36.3 79 0.0017 25.4 4.9 43 94-138 187-231 (256)
178 PF10657 RC-P840_PscD: Photosy 35.8 55 0.0012 23.4 3.2 40 8-47 46-85 (144)
179 PRK10916 ADP-heptose:LPS hepto 35.3 57 0.0012 27.5 4.0 50 10-62 2-53 (348)
180 PF01316 Arg_repressor: Argini 35.2 27 0.00058 22.4 1.5 22 25-46 22-43 (70)
181 cd01983 Fer4_NifH The Fer4_Nif 35.2 93 0.002 19.8 4.4 33 11-43 2-34 (99)
182 KOG1838 Alpha/beta hydrolase [ 35.1 94 0.002 27.3 5.2 40 7-46 124-164 (409)
183 cd01421 IMPCH Inosine monophos 35.1 61 0.0013 25.2 3.7 43 23-71 11-55 (187)
184 PF00289 CPSase_L_chain: Carba 34.4 30 0.00064 24.3 1.8 29 15-45 78-106 (110)
185 TIGR00347 bioD dethiobiotin sy 34.3 1.1E+02 0.0024 22.5 5.1 27 16-42 6-32 (166)
186 TIGR02329 propionate_PrpR prop 34.1 1.2E+02 0.0026 27.6 6.0 42 92-138 131-172 (526)
187 PRK04940 hypothetical protein; 34.1 1.2E+02 0.0026 23.4 5.2 34 110-143 62-96 (180)
188 PRK06849 hypothetical protein; 34.0 93 0.002 26.7 5.2 35 8-46 4-38 (389)
189 cd01981 Pchlide_reductase_B Pc 33.9 77 0.0017 27.8 4.7 26 108-136 370-395 (430)
190 cd02067 B12-binding B12 bindin 33.7 87 0.0019 21.7 4.2 39 7-45 49-88 (119)
191 PF13460 NAD_binding_10: NADH( 33.7 42 0.00092 25.0 2.7 35 26-65 12-46 (183)
192 COG0300 DltE Short-chain dehyd 33.5 43 0.00093 27.5 2.8 33 10-45 7-39 (265)
193 PF00919 UPF0004: Uncharacteri 33.3 27 0.00058 23.9 1.4 13 200-212 34-46 (98)
194 TIGR00640 acid_CoA_mut_C methy 33.2 71 0.0015 23.1 3.7 38 7-44 52-90 (132)
195 PF00448 SRP54: SRP54-type pro 33.0 89 0.0019 24.2 4.5 38 11-48 4-41 (196)
196 TIGR03274 methan_mark_7 putati 32.8 58 0.0013 26.9 3.4 34 10-43 72-106 (302)
197 cd01017 AdcA Metal binding pro 32.8 1.1E+02 0.0024 25.1 5.2 42 94-137 208-251 (282)
198 TIGR01234 L-ribulokinase L-rib 32.7 3.1E+02 0.0068 24.8 8.5 44 94-137 421-469 (536)
199 PRK12311 rpsB 30S ribosomal pr 32.7 73 0.0016 27.1 4.1 32 108-139 152-185 (326)
200 PF07015 VirC1: VirC1 protein; 32.4 74 0.0016 25.6 3.9 34 16-49 10-43 (231)
201 COG0569 TrkA K+ transport syst 32.4 43 0.00093 26.6 2.7 21 26-46 13-33 (225)
202 TIGR02195 heptsyl_trn_II lipop 32.3 2.9E+02 0.0064 22.9 8.8 100 10-132 1-103 (334)
203 PF02558 ApbA: Ketopantoate re 32.2 45 0.00099 24.1 2.6 20 27-46 12-31 (151)
204 TIGR00639 PurN phosphoribosylg 32.1 1.3E+02 0.0028 23.3 5.2 44 94-137 13-58 (190)
205 COG2861 Uncharacterized protei 31.9 2.8E+02 0.0061 22.6 7.8 40 92-135 137-179 (250)
206 TIGR02699 archaeo_AfpA archaeo 31.8 63 0.0014 24.7 3.3 32 17-48 7-40 (174)
207 TIGR02700 flavo_MJ0208 archaeo 31.7 65 0.0014 25.7 3.6 36 14-49 4-42 (234)
208 cd03115 SRP The signal recogni 31.5 1.1E+02 0.0024 22.6 4.7 37 11-47 3-39 (173)
209 TIGR00176 mobB molybdopterin-g 31.4 94 0.002 23.0 4.2 35 11-45 2-36 (155)
210 PRK13932 stationary phase surv 31.1 1.3E+02 0.0028 24.6 5.2 42 6-50 3-45 (257)
211 PRK00771 signal recognition pa 31.1 1.1E+02 0.0024 27.1 5.2 39 10-48 97-135 (437)
212 PRK08674 bifunctional phosphog 30.8 3.3E+02 0.0071 23.0 9.7 56 10-69 80-135 (337)
213 cd01452 VWA_26S_proteasome_sub 30.8 1.8E+02 0.0038 22.5 5.7 36 11-46 111-146 (187)
214 PF03403 PAF-AH_p_II: Platelet 30.7 55 0.0012 28.3 3.2 38 8-45 99-136 (379)
215 TIGR00064 ftsY signal recognit 30.7 1.2E+02 0.0026 24.9 5.1 38 10-47 74-111 (272)
216 cd00860 ThrRS_anticodon ThrRS 30.6 1.1E+02 0.0024 19.6 4.2 33 10-43 3-35 (91)
217 PF05724 TPMT: Thiopurine S-me 30.5 47 0.001 26.3 2.6 27 11-43 40-66 (218)
218 COG1090 Predicted nucleoside-d 30.5 49 0.0011 27.5 2.6 21 26-46 12-32 (297)
219 PF02702 KdpD: Osmosensitive K 30.3 89 0.0019 24.7 3.9 39 7-45 4-42 (211)
220 PRK00945 acetyl-CoA decarbonyl 30.2 1.3E+02 0.0027 23.1 4.7 30 107-137 35-71 (171)
221 PRK06522 2-dehydropantoate 2-r 30.1 69 0.0015 26.2 3.6 30 10-44 2-31 (304)
222 cd03789 GT1_LPS_heptosyltransf 30.1 77 0.0017 25.7 3.9 43 10-52 1-45 (279)
223 KOG1014 17 beta-hydroxysteroid 30.0 49 0.0011 27.8 2.6 19 26-44 63-81 (312)
224 PF04413 Glycos_transf_N: 3-De 29.7 1E+02 0.0022 23.7 4.2 99 10-137 22-126 (186)
225 TIGR00745 apbA_panE 2-dehydrop 29.5 46 0.001 27.0 2.5 20 27-46 5-24 (293)
226 PRK09361 radB DNA repair and r 29.5 1.2E+02 0.0026 23.7 4.8 35 11-45 26-60 (225)
227 PRK00881 purH bifunctional pho 29.5 66 0.0014 29.1 3.5 44 22-71 14-59 (513)
228 TIGR01675 plant-AP plant acid 29.5 70 0.0015 25.7 3.4 26 22-47 122-147 (229)
229 TIGR02114 coaB_strep phosphopa 29.3 53 0.0011 26.2 2.7 19 25-43 28-46 (227)
230 PRK14098 glycogen synthase; Pr 29.3 53 0.0012 29.4 3.0 39 7-45 4-48 (489)
231 KOG2848 1-acyl-sn-glycerol-3-p 29.2 99 0.0021 25.4 4.1 91 6-98 161-258 (276)
232 PRK10964 ADP-heptose:LPS hepto 29.0 74 0.0016 26.4 3.7 43 10-52 2-46 (322)
233 PF08897 DUF1841: Domain of un 29.0 42 0.0009 24.6 1.8 18 17-34 57-74 (137)
234 PF05728 UPF0227: Uncharacteri 28.9 1.5E+02 0.0032 22.9 5.0 34 110-143 61-95 (187)
235 PF02142 MGS: MGS-like domain 28.8 51 0.0011 22.1 2.2 35 25-65 2-36 (95)
236 COG0560 SerB Phosphoserine pho 28.8 64 0.0014 25.4 3.0 42 93-135 80-121 (212)
237 COG3433 Aryl carrier domain [S 28.8 32 0.00068 22.3 1.0 22 23-44 32-53 (74)
238 PLN02828 formyltetrahydrofolat 28.7 1.3E+02 0.0028 24.8 4.9 45 93-137 82-131 (268)
239 COG1519 KdtA 3-deoxy-D-manno-o 28.6 4.1E+02 0.009 23.5 8.4 100 10-137 50-154 (419)
240 cd02032 Bchl_like This family 28.6 1.1E+02 0.0023 24.7 4.5 36 10-45 2-37 (267)
241 COG2085 Predicted dinucleotide 28.5 56 0.0012 25.9 2.6 29 18-48 8-36 (211)
242 PLN00016 RNA-binding protein; 28.4 90 0.002 26.6 4.2 36 9-46 53-90 (378)
243 TIGR01012 Sa_S2_E_A ribosomal 28.3 85 0.0018 24.6 3.6 29 109-137 109-139 (196)
244 TIGR00288 conserved hypothetic 28.3 80 0.0017 23.9 3.3 32 10-46 108-139 (160)
245 COG3046 Uncharacterized protei 28.3 68 0.0015 28.2 3.2 26 21-46 51-76 (505)
246 PRK09545 znuA high-affinity zi 28.2 1.4E+02 0.003 25.0 5.2 41 95-137 241-283 (311)
247 PF04609 MCR_C: Methyl-coenzym 28.2 75 0.0016 26.0 3.3 33 10-42 73-106 (268)
248 CHL00076 chlB photochlorophyll 28.1 1E+02 0.0022 27.9 4.6 26 108-136 374-399 (513)
249 PF00205 TPP_enzyme_M: Thiamin 28.1 76 0.0016 22.6 3.2 40 97-138 3-48 (137)
250 PRK00455 pyrE orotate phosphor 27.9 1.9E+02 0.0042 22.3 5.6 29 108-136 64-94 (202)
251 PF03205 MobB: Molybdopterin g 27.9 1.3E+02 0.0029 21.8 4.4 33 10-42 2-34 (140)
252 cd03809 GT1_mtfB_like This fam 27.9 58 0.0013 26.6 2.9 28 20-47 16-43 (365)
253 TIGR01425 SRP54_euk signal rec 27.9 1.4E+02 0.003 26.5 5.1 39 10-48 102-140 (429)
254 PF01738 DLH: Dienelactone hyd 27.6 1.4E+02 0.0029 23.1 4.7 32 9-41 15-46 (218)
255 PLN03050 pyridoxine (pyridoxam 27.4 62 0.0014 26.2 2.8 34 9-44 61-95 (246)
256 cd00395 Tyr_Trp_RS_core cataly 27.3 61 0.0013 26.7 2.8 25 20-45 16-40 (273)
257 PF02780 Transketolase_C: Tran 27.3 1.4E+02 0.0031 20.8 4.4 35 9-45 10-44 (124)
258 PF01695 IstB_IS21: IstB-like 27.2 1.5E+02 0.0033 22.4 4.9 44 8-51 47-90 (178)
259 PRK04148 hypothetical protein; 27.1 63 0.0014 23.6 2.5 32 9-46 18-49 (134)
260 PRK05973 replicative DNA helic 27.0 95 0.0021 25.0 3.7 41 10-50 66-106 (237)
261 cd05014 SIS_Kpsf KpsF-like pro 26.9 1.5E+02 0.0033 20.5 4.6 32 17-48 55-86 (128)
262 PRK06719 precorrin-2 dehydroge 26.8 69 0.0015 23.9 2.8 32 9-45 14-45 (157)
263 cd05844 GT1_like_7 Glycosyltra 26.7 3.6E+02 0.0079 22.1 8.8 28 108-135 82-111 (367)
264 PRK06222 ferredoxin-NADP(+) re 26.5 73 0.0016 26.1 3.1 38 9-48 99-136 (281)
265 PRK14099 glycogen synthase; Pr 26.5 67 0.0014 28.8 3.1 38 8-45 3-46 (485)
266 PRK08939 primosomal protein Dn 26.5 1.2E+02 0.0026 25.4 4.4 40 9-48 157-196 (306)
267 PF07801 DUF1647: Protein of u 26.3 1.3E+02 0.0028 22.3 4.0 60 7-66 58-120 (142)
268 PRK04020 rps2P 30S ribosomal p 25.6 93 0.002 24.5 3.4 30 109-138 115-146 (204)
269 TIGR00640 acid_CoA_mut_C methy 25.5 1.6E+02 0.0034 21.3 4.4 39 7-45 1-39 (132)
270 TIGR02137 HSK-PSP phosphoserin 25.3 80 0.0017 24.6 3.0 41 91-133 69-109 (203)
271 PRK11524 putative methyltransf 25.2 1.1E+02 0.0023 25.2 3.9 37 109-145 208-246 (284)
272 PRK02277 orotate phosphoribosy 25.1 2.2E+02 0.0048 22.1 5.5 30 107-136 84-115 (200)
273 TIGR01490 HAD-SF-IB-hyp1 HAD-s 25.0 2E+02 0.0043 21.8 5.2 41 92-133 89-129 (202)
274 PRK14106 murD UDP-N-acetylmura 24.9 1.1E+02 0.0025 26.7 4.3 32 10-46 7-38 (450)
275 PF08357 SEFIR: SEFIR domain; 24.9 99 0.0021 22.4 3.3 30 12-41 5-35 (150)
276 cd00805 TyrRS_core catalytic c 24.8 82 0.0018 25.8 3.1 26 20-46 17-42 (269)
277 PRK14974 cell division protein 24.8 1.7E+02 0.0038 24.9 5.1 38 10-47 142-179 (336)
278 TIGR01278 DPOR_BchB light-inde 24.6 1.3E+02 0.0028 27.2 4.6 26 108-136 364-389 (511)
279 PF03796 DnaB_C: DnaB-like hel 24.5 1.2E+02 0.0026 24.4 4.0 40 11-50 22-62 (259)
280 PRK12404 stage V sporulation p 24.5 2.3E+02 0.005 24.1 5.7 32 108-139 75-109 (334)
281 PLN02896 cinnamyl-alcohol dehy 24.5 1.9E+02 0.0042 24.2 5.5 39 2-44 4-42 (353)
282 TIGR02201 heptsyl_trn_III lipo 24.5 1.1E+02 0.0024 25.6 4.0 105 10-134 1-108 (344)
283 COG0332 FabH 3-oxoacyl-[acyl-c 24.4 1.8E+02 0.0038 24.7 5.0 54 94-147 59-118 (323)
284 PRK09177 xanthine-guanine phos 24.3 2.9E+02 0.0062 20.5 5.7 26 108-133 31-58 (156)
285 cd05008 SIS_GlmS_GlmD_1 SIS (S 24.1 1.7E+02 0.0037 20.2 4.4 31 18-48 55-85 (126)
286 cd03792 GT1_Trehalose_phosphor 24.1 1.2E+02 0.0027 25.4 4.2 30 17-46 10-39 (372)
287 CHL00067 rps2 ribosomal protei 24.1 1.4E+02 0.0031 23.9 4.3 31 108-138 161-193 (230)
288 PTZ00318 NADH dehydrogenase-li 23.8 1.2E+02 0.0025 26.5 4.1 35 7-46 9-43 (424)
289 PF08384 NPP: Pro-opiomelanoco 23.8 27 0.00058 20.3 0.0 10 16-25 35-44 (45)
290 cd05013 SIS_RpiR RpiR-like pro 23.8 1.7E+02 0.0038 20.2 4.4 31 17-47 68-98 (139)
291 PRK13354 tyrosyl-tRNA syntheta 23.7 86 0.0019 27.5 3.2 35 11-46 38-75 (410)
292 cd01980 Chlide_reductase_Y Chl 23.7 1.4E+02 0.003 26.1 4.5 27 107-136 349-375 (416)
293 PRK00652 lpxK tetraacyldisacch 23.6 1.5E+02 0.0032 25.2 4.5 36 10-45 51-88 (325)
294 COG0543 UbiB 2-polyprenylpheno 23.5 95 0.0021 25.1 3.2 37 11-49 110-148 (252)
295 PRK05963 3-oxoacyl-(acyl carri 23.5 1.7E+02 0.0038 24.2 5.0 40 94-133 59-104 (326)
296 PRK13010 purU formyltetrahydro 23.5 1.7E+02 0.0037 24.4 4.7 42 94-137 106-149 (289)
297 KOG3062 RNA polymerase II elon 23.4 1.7E+02 0.0037 23.8 4.4 35 10-44 3-39 (281)
298 cd01141 TroA_d Periplasmic bin 23.4 1.5E+02 0.0033 22.2 4.2 30 108-137 69-100 (186)
299 cd00550 ArsA_ATPase Oxyanion-t 23.4 1.6E+02 0.0034 23.8 4.5 37 11-47 3-39 (254)
300 TIGR00655 PurU formyltetrahydr 23.3 1.6E+02 0.0034 24.4 4.5 43 93-137 96-140 (280)
301 cd01124 KaiC KaiC is a circadi 23.3 1.5E+02 0.0033 22.0 4.2 39 11-49 2-40 (187)
302 PF03446 NAD_binding_2: NAD bi 23.2 93 0.002 23.1 2.9 20 26-45 14-33 (163)
303 PRK06029 3-octaprenyl-4-hydrox 23.2 1.4E+02 0.003 23.1 3.9 39 10-49 3-42 (185)
304 PRK00090 bioD dithiobiotin syn 23.2 2E+02 0.0044 22.3 5.0 28 16-43 8-35 (222)
305 PF07302 AroM: AroM protein; 23.2 2.3E+02 0.0051 22.6 5.2 44 94-139 166-212 (221)
306 PLN02605 monogalactosyldiacylg 23.0 3E+02 0.0064 23.5 6.4 34 12-45 3-39 (382)
307 PF03698 UPF0180: Uncharacteri 23.0 74 0.0016 21.0 2.0 23 24-46 9-31 (80)
308 TIGR01082 murC UDP-N-acetylmur 23.0 94 0.002 27.3 3.3 29 11-43 2-30 (448)
309 TIGR01501 MthylAspMutase methy 23.0 1.9E+02 0.0041 21.1 4.3 39 9-47 2-40 (134)
310 PRK07475 hypothetical protein; 22.9 2.7E+02 0.0059 22.3 5.8 44 94-137 182-227 (245)
311 TIGR01281 DPOR_bchL light-inde 22.8 1.6E+02 0.0034 23.7 4.4 36 10-45 2-37 (268)
312 PRK05299 rpsB 30S ribosomal pr 22.8 1.3E+02 0.0028 24.6 3.8 32 108-139 157-190 (258)
313 PRK11889 flhF flagellar biosyn 22.6 2.1E+02 0.0046 25.3 5.2 40 9-48 242-281 (436)
314 PF01266 DAO: FAD dependent ox 22.6 80 0.0017 26.0 2.7 20 26-45 12-31 (358)
315 TIGR02845 spore_V_AD stage V s 22.6 3.2E+02 0.0069 23.3 6.1 34 108-141 71-107 (327)
316 PRK05647 purN phosphoribosylgl 22.6 2.3E+02 0.005 22.1 5.1 44 94-137 14-59 (200)
317 PRK04280 arginine repressor; P 22.5 67 0.0015 23.8 2.0 22 25-46 21-42 (148)
318 cd01965 Nitrogenase_MoFe_beta_ 22.5 1.6E+02 0.0036 25.7 4.7 25 108-135 371-395 (428)
319 PF13614 AAA_31: AAA domain; P 22.4 1.5E+02 0.0033 21.2 4.0 36 13-48 6-41 (157)
320 PRK02910 light-independent pro 22.3 1.6E+02 0.0034 26.7 4.7 25 108-135 362-386 (519)
321 TIGR00708 cobA cob(I)alamin ad 22.3 2.6E+02 0.0056 21.4 5.2 35 8-42 5-39 (173)
322 PLN02211 methyl indole-3-aceta 22.2 2E+02 0.0042 23.3 4.9 39 7-46 17-55 (273)
323 cd02069 methionine_synthase_B1 22.2 1.5E+02 0.0033 23.3 4.1 40 7-46 138-177 (213)
324 PF00781 DAGK_cat: Diacylglyce 22.2 1.8E+02 0.004 20.4 4.2 37 9-46 2-38 (130)
325 cd00859 HisRS_anticodon HisRS 22.1 1.8E+02 0.0038 18.3 3.9 34 10-44 3-36 (91)
326 PRK08309 short chain dehydroge 22.1 1.3E+02 0.0029 22.8 3.6 20 26-45 13-32 (177)
327 COG0503 Apt Adenine/guanine ph 22.1 2.4E+02 0.0052 21.5 5.1 37 97-135 44-82 (179)
328 PRK03094 hypothetical protein; 22.1 82 0.0018 20.8 2.1 21 25-45 10-30 (80)
329 TIGR03127 RuMP_HxlB 6-phospho 22.1 1.9E+02 0.0041 21.6 4.5 32 17-48 80-111 (179)
330 smart00382 AAA ATPases associa 21.9 1.4E+02 0.003 20.1 3.6 39 8-46 2-40 (148)
331 TIGR00379 cobB cobyrinic acid 21.9 2.6E+02 0.0057 24.8 5.9 101 16-139 8-120 (449)
332 PRK13011 formyltetrahydrofolat 21.7 2E+02 0.0043 23.9 4.8 42 93-136 101-144 (286)
333 PRK05428 HPr kinase/phosphoryl 21.6 5E+02 0.011 21.9 7.7 50 92-142 68-119 (308)
334 PF01494 FAD_binding_3: FAD bi 21.6 88 0.0019 25.7 2.8 21 25-45 13-33 (356)
335 CHL00194 ycf39 Ycf39; Provisio 21.6 86 0.0019 26.0 2.7 31 10-44 2-32 (317)
336 COG1763 MobB Molybdopterin-gua 21.5 2E+02 0.0044 21.7 4.4 36 11-46 5-40 (161)
337 KOG1210 Predicted 3-ketosphing 21.5 1.8E+02 0.004 24.6 4.5 34 9-46 34-67 (331)
338 PF13378 MR_MLE_C: Enolase C-t 21.5 2.7E+02 0.0059 18.8 5.1 42 108-149 18-66 (111)
339 TIGR03018 pepcterm_TyrKin exop 21.4 2.5E+02 0.0053 21.7 5.1 39 8-46 34-75 (207)
340 CHL00072 chlL photochlorophyll 21.4 1.8E+02 0.004 24.0 4.6 37 10-46 2-38 (290)
341 TIGR03088 stp2 sugar transfera 21.4 1.6E+02 0.0035 24.6 4.4 100 13-134 7-108 (374)
342 PRK03359 putative electron tra 21.3 1.9E+02 0.0041 23.6 4.5 31 108-138 112-148 (256)
343 PF13604 AAA_30: AAA domain; P 21.1 2.7E+02 0.0059 21.3 5.3 37 10-46 20-56 (196)
344 PRK10867 signal recognition pa 21.1 2.1E+02 0.0046 25.3 5.1 40 9-48 100-141 (433)
345 PF03767 Acid_phosphat_B: HAD 21.1 74 0.0016 25.4 2.1 24 24-47 119-142 (229)
346 CHL00175 minD septum-site dete 20.9 2.2E+02 0.0048 23.0 5.0 39 8-46 14-54 (281)
347 TIGR02964 xanthine_xdhC xanthi 20.9 1.8E+02 0.004 23.4 4.4 35 7-46 99-133 (246)
348 PRK13869 plasmid-partitioning 20.9 2.2E+02 0.0048 24.9 5.1 37 10-46 122-160 (405)
349 COG2894 MinD Septum formation 20.8 2.2E+02 0.0047 23.2 4.5 37 10-46 3-41 (272)
350 PF09334 tRNA-synt_1g: tRNA sy 20.8 81 0.0018 27.4 2.4 28 20-47 17-47 (391)
351 TIGR00521 coaBC_dfp phosphopan 20.8 1.1E+02 0.0025 26.6 3.3 37 10-47 5-41 (390)
352 cd01120 RecA-like_NTPases RecA 20.8 2.3E+02 0.0051 20.0 4.7 39 10-48 1-39 (165)
353 cd01020 TroA_b Metal binding p 20.7 2.7E+02 0.0058 22.5 5.4 39 95-135 195-238 (264)
354 TIGR03772 anch_rpt_subst ancho 20.7 2.3E+02 0.0051 25.5 5.3 39 95-135 409-451 (479)
355 PF07972 Flavodoxin_NdrI: NrdI 20.6 64 0.0014 23.1 1.5 22 115-136 87-108 (122)
356 cd03466 Nitrogenase_NifN_2 Nit 20.6 2E+02 0.0042 25.3 4.8 25 108-135 372-396 (429)
357 PF00175 NAD_binding_1: Oxidor 20.6 1.7E+02 0.0037 19.4 3.7 27 22-48 8-36 (109)
358 COG2179 Predicted hydrolase of 20.6 2E+02 0.0043 22.0 4.1 42 92-135 48-90 (175)
359 PRK08057 cobalt-precorrin-6x r 20.5 2.3E+02 0.0049 23.0 4.8 33 9-46 3-35 (248)
360 PRK07231 fabG 3-ketoacyl-(acyl 20.5 1E+02 0.0022 24.0 2.8 20 26-45 19-38 (251)
361 TIGR02015 BchY chlorophyllide 20.5 1.7E+02 0.0036 25.8 4.3 26 107-135 354-379 (422)
362 PLN02686 cinnamoyl-CoA reducta 20.5 2.4E+02 0.0053 24.0 5.3 32 10-44 54-85 (367)
363 smart00851 MGS MGS-like domain 20.5 88 0.0019 20.6 2.1 26 25-52 2-27 (90)
364 PRK10481 hypothetical protein; 20.4 2.5E+02 0.0053 22.5 4.9 45 94-140 170-217 (224)
365 PRK14494 putative molybdopteri 20.3 1.8E+02 0.0039 23.3 4.1 34 11-44 4-37 (229)
366 KOG0332 ATP-dependent RNA heli 20.3 86 0.0019 27.4 2.4 24 24-47 342-365 (477)
367 PRK06835 DNA replication prote 20.3 1.8E+02 0.0039 24.6 4.4 41 9-49 184-224 (329)
368 TIGR01680 Veg_Stor_Prot vegeta 20.3 1.4E+02 0.003 24.7 3.5 27 21-47 146-172 (275)
369 cd01019 ZnuA Zinc binding prot 20.3 2.5E+02 0.0054 23.1 5.1 25 109-133 229-255 (286)
370 TIGR02069 cyanophycinase cyano 20.3 2.6E+02 0.0056 22.6 5.1 38 7-44 27-65 (250)
371 PRK12342 hypothetical protein; 20.2 2.2E+02 0.0048 23.2 4.7 30 109-138 110-145 (254)
372 PRK05717 oxidoreductase; Valid 20.2 2.4E+02 0.0053 22.1 5.0 32 9-43 10-41 (255)
373 PRK14478 nitrogenase molybdenu 20.2 1.4E+02 0.0031 26.6 3.9 24 108-134 393-416 (475)
374 COG0451 WcaG Nucleoside-diphos 20.1 1.5E+02 0.0032 24.0 3.8 27 18-46 8-34 (314)
375 PLN02662 cinnamyl-alcohol dehy 20.1 95 0.0021 25.5 2.7 32 10-45 6-37 (322)
No 1
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=7.6e-41 Score=292.06 Aligned_cols=215 Identities=32% Similarity=0.649 Sum_probs=165.4
Q ss_pred CcccCCCCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCC-------C---CCCeEEEEccCCCC
Q 027763 1 MEEKKIHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQ-------P---SDSVQIDTISDGYD 70 (219)
Q Consensus 1 m~~~~~~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~-------~---~~~i~~~~l~~~~~ 70 (219)
|++. +.++|||++|||+|||++||++||++|++||+.|||++|+.+..++.+.. . ...++|..+|+++|
T Consensus 1 ~~~~-~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp 79 (480)
T PLN02555 1 MESE-SSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWA 79 (480)
T ss_pred CCCC-CCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCC
Confidence 6554 35689999999999999999999999999999999999998776543200 0 12367777888887
Q ss_pred CCCCCCcccHHHHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHh
Q 027763 71 DGGFSEAESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVH 150 (219)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~ 150 (219)
+ +.+...+...++..+.+.+.+.++++++++..+.+|++|||+|.|++|+.++|+++|||+++||+++|+++++++++.
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~ 158 (480)
T PLN02555 80 E-DDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY 158 (480)
T ss_pred C-CcccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh
Confidence 6 433223444455555545677888888876433345699999999999999999999999999999999999999987
Q ss_pred cCcccCCC---CCCceecCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 151 HGLLKLPV---SSTPVSIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 151 ~~~~~~~~---~~~~~~~Pg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
++.++.+. .+.++.+||+|+++.+|||+++......+..++.+.+..++..+|+|||+|||+|||++
T Consensus 159 ~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 228 (480)
T PLN02555 159 HGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKE 228 (480)
T ss_pred hcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHH
Confidence 66443221 12346799999999999998775322334456667777888899999999999999985
No 2
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.2e-40 Score=287.11 Aligned_cols=205 Identities=55% Similarity=0.920 Sum_probs=160.2
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHH
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQN 86 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 86 (219)
+++||+++|||+|||++||++|||+|+++|++|||++|+.+..++.+. ..++|+++.+|+++|+++.+..++...++..
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~ 82 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-PSSPISIATISDGYDQGGFSSAGSVPEYLQN 82 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-CCCCEEEEEcCCCCCCcccccccCHHHHHHH
Confidence 568999999999999999999999999999999999999877655321 1246999999998886322333345455666
Q ss_pred HHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhcCcccCCCCCCceecC
Q 027763 87 MEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHHGLLKLPVSSTPVSIP 166 (219)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~P 166 (219)
+.+.+.+.++++++++..+.+|++|||+|.|++|+.++|+++|||++.||+++++.++++++... . . ++..+.+|
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~~~---~-~-~~~~~~~p 157 (449)
T PLN02173 83 FKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLSYI---N-N-GSLTLPIK 157 (449)
T ss_pred HHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhHHh---c-c-CCccCCCC
Confidence 65566778889888764333456999999999999999999999999999999998877765321 1 1 12335689
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 167 GMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 167 g~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
|+|+++.+|||+++.+....+...+.+.+..++..+|+|||+|||+|||++
T Consensus 158 g~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 208 (449)
T PLN02173 158 DLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLH 208 (449)
T ss_pred CCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHH
Confidence 999999999998776433333455666777888899999999999999985
No 3
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.7e-38 Score=273.62 Aligned_cols=203 Identities=31% Similarity=0.549 Sum_probs=154.7
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHh-CCCcEEEEeCccc-ccccCCC-CCCCCeEEEEccCCCCCCCCC-CcccHHHH
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLAS-KGLKITLAITNFI-YKTKKPP-QPSDSVQIDTISDGYDDGGFS-EAESIDAY 83 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~-rG~~VT~~t~~~~-~~~~~~~-~~~~~i~~~~l~~~~~~~~~~-~~~~~~~~ 83 (219)
++||+++|||+|||+|||++|||+|++ +|++|||++|+.+ ..++.+. ...++|+++.+++++|+ +.+ ...+....
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~-g~~~~~~~~~~~ 81 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDD-GVISNTDDVQNR 81 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCC-ccccccccHHHH
Confidence 369999999999999999999999996 7999999999865 2222111 11236999999988876 432 23344444
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhcCcccCCCCCCce
Q 027763 84 LQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHHGLLKLPVSSTPV 163 (219)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
+..+...+.+.++++++++...++|++|||+|.+++|+.++|+++|||++.||+++|+++++|+++..+. +..+
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~------~~~~ 155 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN------NSVF 155 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC------CCee
Confidence 4445555678899998886433356799999999999999999999999999999999999998876431 2346
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccC--CCCeEEEcChhhhccC
Q 027763 164 SIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNAD--RADLVLVNTFYKLESQ 217 (219)
Q Consensus 164 ~~Pg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vlvNtf~eLE~~ 217 (219)
.+||+|+++.+|||+++......+...+.+.+..+... .++|||+|||+|||++
T Consensus 156 ~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 211 (455)
T PLN02152 156 EFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPE 211 (455)
T ss_pred ecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHH
Confidence 79999999999999877543333334556666666554 3689999999999986
No 4
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.8e-38 Score=272.31 Aligned_cols=210 Identities=29% Similarity=0.408 Sum_probs=154.7
Q ss_pred CcccCCCCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccH
Q 027763 1 MEEKKIHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESI 80 (219)
Q Consensus 1 m~~~~~~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~ 80 (219)
||++. ++.|||++|||+|||++||++||++|++||+.|||++|+.+..+... ..++|+++.+|+++|+.+.+.. ..
T Consensus 1 ~~~~~-~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~--~~~~i~~~~ip~glp~~~~~~~-~~ 76 (451)
T PLN02410 1 MEEKP-ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSD--DFTDFQFVTIPESLPESDFKNL-GP 76 (451)
T ss_pred CCcCC-CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccccc--CCCCeEEEeCCCCCCccccccc-CH
Confidence 88654 77899999999999999999999999999999999999987632111 1246999999998886222222 22
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhc-CCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhc----Cc-c
Q 027763 81 DAYLQNMEVAGLKTLAELITKYKS-SSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHH----GL-L 154 (219)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~----~~-~ 154 (219)
..++..+...+...++++++++.. ..++++|||+|+|++|+.++|+++|||+++||+++|+.+++++++.. +. .
T Consensus 77 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~ 156 (451)
T PLN02410 77 IEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLA 156 (451)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCC
Confidence 234444544566778888887642 23567999999999999999999999999999999999998887531 11 1
Q ss_pred cCCC--CCCceecCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 155 KLPV--SSTPVSIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 155 ~~~~--~~~~~~~Pg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
+.+. ++..+.+||+|+++.+|+|...... .+.....+.. ....++|+|||+|||+|||++
T Consensus 157 ~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~--~~~~~~~~~~-~~~~~~~~~vlvNTf~eLE~~ 218 (451)
T PLN02410 157 PLKEPKGQQNELVPEFHPLRCKDFPVSHWAS--LESIMELYRN-TVDKRTASSVIINTASCLESS 218 (451)
T ss_pred CccccccCccccCCCCCCCChHHCcchhcCC--cHHHHHHHHH-HhhcccCCEEEEeChHHhhHH
Confidence 2111 1233468999999999999755322 1223333333 335678999999999999985
No 5
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.3e-38 Score=274.69 Aligned_cols=213 Identities=21% Similarity=0.288 Sum_probs=152.5
Q ss_pred CcccC-CCCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCC-CCCCeEEEEcc----CCCCCCCC
Q 027763 1 MEEKK-IHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQ-PSDSVQIDTIS----DGYDDGGF 74 (219)
Q Consensus 1 m~~~~-~~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~-~~~~i~~~~l~----~~~~~~~~ 74 (219)
|-+++ .+++|||++|||+|||++||++|||+|+++|++|||++|+.+.+++.+.. ..++|+++.+| +++|+ |.
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPd-G~ 79 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPS-GV 79 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCC-CC
Confidence 54543 36789999999999999999999999999999999999999887665321 12468887765 24555 44
Q ss_pred CCcccHH-HHHHHHH---HHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHh
Q 027763 75 SEAESID-AYLQNME---VAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVH 150 (219)
Q Consensus 75 ~~~~~~~-~~~~~~~---~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~ 150 (219)
+...++. .....+. ..+.+.+.+++++. ..+++|||+|.|++|+.++|+++|||+++|||++|+++++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~---~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~ 156 (477)
T PLN02863 80 ENVKDLPPSGFPLMIHALGELYAPLLSWFRSH---PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLW 156 (477)
T ss_pred cChhhcchhhHHHHHHHHHHhHHHHHHHHHhC---CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHh
Confidence 4332221 1111121 12344555555543 246799999999999999999999999999999999999999886
Q ss_pred cCccc---CCCCCCce---ecCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 151 HGLLK---LPVSSTPV---SIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 151 ~~~~~---~~~~~~~~---~~Pg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
.+... ..+.++.+ .+||+|+++.+|+|.+++.....+...+.+.+..+..+.++|||+|||+|||++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 229 (477)
T PLN02863 157 REMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGI 229 (477)
T ss_pred hcccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHH
Confidence 43211 01111223 479999999999998775432223344556666666778999999999999985
No 6
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-37 Score=270.26 Aligned_cols=207 Identities=26% Similarity=0.448 Sum_probs=158.2
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCC-CCCCCeEEEEccCCCCCCCCCCcccHHHHHH
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPP-QPSDSVQIDTISDGYDDGGFSEAESIDAYLQ 85 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~-~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 85 (219)
+++|||++|||+|||++||++||++|++||++|||+||+.+.+++.+. ...++|+++.+|+++++ +. ..++..+..
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~-~~--~~~~~~l~~ 81 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDD-DP--PRDFFSIEN 81 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCC-Cc--cccHHHHHH
Confidence 457999999999999999999999999999999999999987655432 11236999999987654 32 123333444
Q ss_pred HHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHh----cCcccCCC---
Q 027763 86 NMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVH----HGLLKLPV--- 158 (219)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~----~~~~~~~~--- 158 (219)
.+...+.+.++++++++... .|++|||+|+|++|+.++|+++|||+++||+++++.+++++++. .+.++..+
T Consensus 82 a~~~~~~~~l~~ll~~l~~~-~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (448)
T PLN02562 82 SMENTMPPQLERLLHKLDED-GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGCPR 160 (448)
T ss_pred HHHHhchHHHHHHHHHhcCC-CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccccc
Confidence 44445677888888876432 35799999999999999999999999999999999999887764 22222111
Q ss_pred CCCce-ecCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 159 SSTPV-SIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 159 ~~~~~-~~Pg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
..+++ .+||+|+++.+|+|+++.+.......++.+.+..+...+++|||+|||+|||++
T Consensus 161 ~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 220 (448)
T PLN02562 161 QLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYD 220 (448)
T ss_pred cccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHH
Confidence 11234 589999999999998775432233446777788888899999999999999984
No 7
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.7e-36 Score=261.68 Aligned_cols=206 Identities=16% Similarity=0.230 Sum_probs=148.1
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCC--CcEE--EEeCcccccccC----CC-CCCCCeEEEEccCCCCC-CCCCCcc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKG--LKIT--LAITNFIYKTKK----PP-QPSDSVQIDTISDGYDD-GGFSEAE 78 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG--~~VT--~~t~~~~~~~~~----~~-~~~~~i~~~~l~~~~~~-~~~~~~~ 78 (219)
.|||++|||+|||++||++|||+|++|| +.|| ++++..+...+. .. ...++|+++.+|++.+. .+.+...
T Consensus 4 ~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 83 (451)
T PLN03004 4 EAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSRH 83 (451)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccccc
Confidence 3999999999999999999999999998 4455 455555432211 11 01246999999976532 1211112
Q ss_pred cHHHHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhcC--cccC
Q 027763 79 SIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHHG--LLKL 156 (219)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~--~~~~ 156 (219)
+....+..+...+...++++++++.. .++++|||+|+|++|+.++|+++|||+++|||++|+++++++|++.. ..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~l~~l~~-~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~ 162 (451)
T PLN03004 84 HHESLLLEILCFSNPSVHRTLFSLSR-NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDETTPG 162 (451)
T ss_pred CHHHHHHHHHHhhhHHHHHHHHhcCC-CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccccccc
Confidence 22222222333456678888887632 24579999999999999999999999999999999999999987532 1111
Q ss_pred C--CCCCceecCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 157 P--VSSTPVSIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 157 ~--~~~~~~~~Pg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
. .+..++.+||+|+++.+|||+++.+.+ +..++.+.+..+...+++|||+|||+|||++
T Consensus 163 ~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~ 223 (451)
T PLN03004 163 KNLKDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALENR 223 (451)
T ss_pred cccccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHHH
Confidence 1 111336789999999999998776532 2355677777888889999999999999985
No 8
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=7.1e-36 Score=260.35 Aligned_cols=208 Identities=29% Similarity=0.483 Sum_probs=152.3
Q ss_pred CcccCCCCceEEEEeCCCccChhHHHHHHHH--HHhCCCcEEEEeCcccccccCCCC-CCCCeEEEEccCCCCCCCCCCc
Q 027763 1 MEEKKIHRAHVLIVPYPSQGHINPTFQFAKR--LASKGLKITLAITNFIYKTKKPPQ-PSDSVQIDTISDGYDDGGFSEA 77 (219)
Q Consensus 1 m~~~~~~~~hvvv~p~p~~GH~~P~l~La~~--L~~rG~~VT~~t~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~~~~~~ 77 (219)
|++...++.||+++|+|++||++||++||++ |++||++|||++|+.+.+++++.. ....+++..+|+++|+ +.+
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~-~~~-- 77 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPK-DDP-- 77 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCC-Ccc--
Confidence 7666667889999999999999999999999 558999999999999876654321 1235788878888876 332
Q ss_pred ccHHHHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhc--Cccc
Q 027763 78 ESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHH--GLLK 155 (219)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~--~~~~ 155 (219)
.+...++..+.+.+.+.+++++++ .++||||+|.+++|+.++|+++|||+++||++++++++++++++. +.++
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~-----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~ 152 (456)
T PLN02210 78 RAPETLLKSLNKVGAKNLSKIIEE-----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFP 152 (456)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHhc-----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCC
Confidence 223334444443444445555543 368999999999999999999999999999999999998887643 2222
Q ss_pred CCCC-CCceecCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 156 LPVS-STPVSIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 156 ~~~~-~~~~~~Pg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
...+ +..+.+||+|+++.+|+|+.+.+... ......+.+..+...+++||++|||+|||++
T Consensus 153 ~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 214 (456)
T PLN02210 153 DLEDLNQTVELPALPLLEVRDLPSFMLPSGG-AHFNNLMAEFADCLRYVKWVLVNSFYELESE 214 (456)
T ss_pred cccccCCeeeCCCCCCCChhhCChhhhcCCc-hHHHHHHHHHHHhcccCCEEEEeCHHHHhHH
Confidence 1111 23457899999999999987754321 2122333344456778999999999999985
No 9
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.2e-36 Score=263.24 Aligned_cols=203 Identities=17% Similarity=0.220 Sum_probs=149.6
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCC----CcEEEEeCccccc----ccCCC----C-CCCCeEEEEccCCCCCCC
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKG----LKITLAITNFIYK----TKKPP----Q-PSDSVQIDTISDGYDDGG 73 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG----~~VT~~t~~~~~~----~~~~~----~-~~~~i~~~~l~~~~~~~~ 73 (219)
+++|||++|||+|||++||++||++|++|| +.|||++|+.+.. ++.+. . ...+|+++.+|++.++.+
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~ 81 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD 81 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc
Confidence 357999999999999999999999999996 8999999876532 22110 0 012599999997532212
Q ss_pred CCCcccHHHHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhc--
Q 027763 74 FSEAESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHH-- 151 (219)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~-- 151 (219)
.+ +...++..+.+.+.+.++++++++ ..+++|||+|+|++|+.++|+++|||+++|||++|++++++++++.
T Consensus 82 ~e---~~~~~~~~~~~~~~~~l~~~L~~l---~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 82 AA---GVEEFISRYIQLHAPHVRAAIAGL---SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred cc---cHHHHHHHHHHhhhHHHHHHHHhc---CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 22 222334434445566777777765 2467999999999999999999999999999999999999998753
Q ss_pred Cccc--CCCCCCceecCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 152 GLLK--LPVSSTPVSIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 152 ~~~~--~~~~~~~~~~Pg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
+..+ .++.+.++.+||+|+++.+|||..+.+.. +..++++....++..+|+|||+|||+|||++
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 221 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTAAELEPG 221 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEechHHhhHH
Confidence 2211 11112346799999999999998775432 2234555666777889999999999999985
No 10
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=7.7e-36 Score=260.27 Aligned_cols=202 Identities=19% Similarity=0.266 Sum_probs=149.6
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHH-hCCCcEEEEeCcccccccCCC-CCCCCeEEEEccC----CCCCCCCCCcccH
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLA-SKGLKITLAITNFIYKTKKPP-QPSDSVQIDTISD----GYDDGGFSEAESI 80 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~-~rG~~VT~~t~~~~~~~~~~~-~~~~~i~~~~l~~----~~~~~~~~~~~~~ 80 (219)
.++|||++|||+|||++||++|||+|+ ++|++|||++|+.+..++.+. ...++|+++.+|+ ++|+.+ .+.
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~----~~~ 79 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS----AHV 79 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC----ccH
Confidence 468999999999999999999999998 799999999999887554221 1123689998884 333111 122
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhc--CcccCC-
Q 027763 81 DAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHH--GLLKLP- 157 (219)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~--~~~~~~- 157 (219)
...+......+.+.++++++++. .+++|||+|+|++|+.++|+++|||+++||+++|++++++++++. +.....
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~---~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~~ 156 (481)
T PLN02992 80 VTKIGVIMREAVPTLRSKIAEMH---QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEEH 156 (481)
T ss_pred HHHHHHHHHHhHHHHHHHHHhcC---CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhcccccccc
Confidence 22222223334567777777642 357999999999999999999999999999999999988877642 211111
Q ss_pred -CCCCceecCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 158 -VSSTPVSIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 158 -~~~~~~~~Pg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
..++++.+||+|+++.+|+|..+.++. ...+..+.+..++..+|+|||+|||+|||++
T Consensus 157 ~~~~~~~~iPg~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 215 (481)
T PLN02992 157 TVQRKPLAMPGCEPVRFEDTLDAYLVPD--EPVYRDFVRHGLAYPKADGILVNTWEEMEPK 215 (481)
T ss_pred ccCCCCcccCCCCccCHHHhhHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHH
Confidence 112346789999999999997554432 2356677788888889999999999999985
No 11
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=5.4e-36 Score=260.94 Aligned_cols=203 Identities=17% Similarity=0.198 Sum_probs=143.4
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCC--CCCCeEEEEcc----CCCCCCCCCCcccH
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQ--PSDSVQIDTIS----DGYDDGGFSEAESI 80 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~--~~~~i~~~~l~----~~~~~~~~~~~~~~ 80 (219)
.++|||++|||+|||++||++|||+|++||++|||++|+.+..++.+.. ..++|+++.+| +|+|+ +.+...+.
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~-~~~~~~~~ 83 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPS-SAESSTDV 83 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCC-Cccccccc
Confidence 4579999999999999999999999999999999999999876554210 12359999988 56765 33322233
Q ss_pred H----HHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHh----cC
Q 027763 81 D----AYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVH----HG 152 (219)
Q Consensus 81 ~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~----~~ 152 (219)
. .++....+.+.+.+++++++ .+++|||+|.|++|+.++|+++|||+++|+++++++++++++.. ++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~ 158 (472)
T PLN02670 84 PYTKQQLLKKAFDLLEPPLTTFLET-----SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG 158 (472)
T ss_pred chhhHHHHHHHHHHhHHHHHHHHHh-----CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc
Confidence 2 12222222334455555543 25799999999999999999999999999999999999887552 23
Q ss_pred cccCCCCCCce-ecCCCCC------CCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 153 LLKLPVSSTPV-SIPGMPL------LELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 153 ~~~~~~~~~~~-~~Pg~p~------~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
.++.. ++.+ .+||++| ++.+|+|+++............+.+......+|+|||+|||+|||++
T Consensus 159 ~~~~~--~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~ 228 (472)
T PLN02670 159 DLRST--AEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPE 228 (472)
T ss_pred cCCCc--cccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHH
Confidence 22211 2223 3566532 56679998764322222234445566677888999999999999985
No 12
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.1e-35 Score=260.04 Aligned_cols=203 Identities=21% Similarity=0.345 Sum_probs=143.5
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCC---C--CCCeEEEEcc-----CCCCCCCCCC
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQ---P--SDSVQIDTIS-----DGYDDGGFSE 76 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~---~--~~~i~~~~l~-----~~~~~~~~~~ 76 (219)
++.||+++|||+|||++||++||++|++||+.|||++|+.+..++.+.. . ...|+++.+| +++|+ +.+.
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~-~~~~ 85 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPI-GCEN 85 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCC-Cccc
Confidence 4579999999999999999999999999999999999998876543211 0 1248999987 57775 4332
Q ss_pred cccHH--HHHHHHHH---HhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHh-
Q 027763 77 AESID--AYLQNMEV---AGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVH- 150 (219)
Q Consensus 77 ~~~~~--~~~~~~~~---~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~- 150 (219)
..++. .+...+.. .+.+.+++++++. ..+++|||+|.|++|+.++|+++|||+++||+++++++++++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~ 162 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL 162 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH
Confidence 22211 22222222 2344555555532 246799999999999999999999999999999999998876553
Q ss_pred -cCcccCCCCCCceecCCCCC---CCCCCCCCCCCCCCCChHHHHHHHHHHh-ccCCCCeEEEcChhhhccC
Q 027763 151 -HGLLKLPVSSTPVSIPGMPL---LELQDMPSFIGVQGQYPAYFEMVLNQFS-NADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 151 -~~~~~~~~~~~~~~~Pg~p~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNtf~eLE~~ 217 (219)
.+..+.+.++.++.+||+|+ ++.+|||+.+.... .++.+.+... ..++++|||+|||+|||++
T Consensus 163 ~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (491)
T PLN02534 163 HNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLP----DLDDVRNKMREAESTAFGVVVNSFNELEHG 230 (491)
T ss_pred hcccccCCCCCceeecCCCCccccccHHHCChhhcCcc----cHHHHHHHHHhhcccCCEEEEecHHHhhHH
Confidence 22222222335677999985 89999997654321 1223333333 3456899999999999985
No 13
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.9e-35 Score=255.95 Aligned_cols=208 Identities=25% Similarity=0.467 Sum_probs=158.7
Q ss_pred cCCCCceEEEEeCCCccChhHHHHHHHHHHhC--CCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHH
Q 027763 4 KKIHRAHVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESID 81 (219)
Q Consensus 4 ~~~~~~hvvv~p~p~~GH~~P~l~La~~L~~r--G~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 81 (219)
+++.+.||+++|+|++||++||++||++|++| ||+|||++|+.+.+++.+....++|+|+.+|+++|+ +.+...+..
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~-~~~~~~~~~ 84 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPS-ELVRAADFP 84 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCC-ccccccCHH
Confidence 34567899999999999999999999999999 999999999998776654211247999999987665 333223444
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhc----CcccCC
Q 027763 82 AYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHH----GLLKLP 157 (219)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~----~~~~~~ 157 (219)
.++..+...+.+.++++++++. .++||||+|.+++|+.++|+++|||++.||+++++.+++++++.. +..+..
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~---~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (459)
T PLN02448 85 GFLEAVMTKMEAPFEQLLDRLE---PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVE 161 (459)
T ss_pred HHHHHHHHHhHHHHHHHHHhcC---CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 4444444445667777777653 468999999999999999999999999999999999988877642 222211
Q ss_pred C---CCCce-ecCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 158 V---SSTPV-SIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 158 ~---~~~~~-~~Pg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
. .++.+ .+||+++++.+|+|.++.+. ....++.+.+..++..++++||+|||+|||++
T Consensus 162 ~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 223 (459)
T PLN02448 162 LSESGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQ 223 (459)
T ss_pred cccccCCccccCCCCCCCChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHH
Confidence 1 12223 48999999999999876543 22345667777788888999999999999986
No 14
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=3.2e-35 Score=255.25 Aligned_cols=203 Identities=16% Similarity=0.195 Sum_probs=147.2
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhC-CCcEEEEeCcccccccC--C-CC---CCCCeEEEEccCCCCCCCC-CCcccH
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASK-GLKITLAITNFIYKTKK--P-PQ---PSDSVQIDTISDGYDDGGF-SEAESI 80 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~r-G~~VT~~t~~~~~~~~~--~-~~---~~~~i~~~~l~~~~~~~~~-~~~~~~ 80 (219)
+||+++|||+|||++||++||++|+++ |..|||++|..+..++. . .. ..++|+++.+|++..+ ++ ....+.
T Consensus 4 pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~l~~~~~~~ 82 (470)
T PLN03015 4 PHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVD-NLVEPDATI 82 (470)
T ss_pred cEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccc-cCCCCCccH
Confidence 699999999999999999999999987 99999999887654331 1 00 0125999999853222 22 111122
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCC-eeEEechhhHHHHHHHHHhc--CcccC-
Q 027763 81 DAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLF-SAAFFTQTCAVNFIYYLVHH--GLLKL- 156 (219)
Q Consensus 81 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP-~v~~~~~~a~~~~~~~~~~~--~~~~~- 156 (219)
...+....+.+.+.++++++++. .+++|||+|.|++|+.++|+++||| +++|++++++.+++++|++. +....
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~---~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~~~ 159 (470)
T PLN03015 83 FTKMVVKMRAMKPAVRDAVKSMK---RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVEGE 159 (470)
T ss_pred HHHHHHHHHhchHHHHHHHHhcC---CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccccc
Confidence 22222233346678888888763 3579999999999999999999999 69999999998888887742 22111
Q ss_pred -CCCCCceecCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 157 -PVSSTPVSIPGMPLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 157 -~~~~~~~~~Pg~p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
.+.++++.+||+|+++.+|+|..+.+.. ...+..+.+..++..+|+|||+|||+|||++
T Consensus 160 ~~~~~~~~~vPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~ 219 (470)
T PLN03015 160 YVDIKEPLKIPGCKPVGPKELMETMLDRS--DQQYKECVRSGLEVPMSDGVLVNTWEELQGN 219 (470)
T ss_pred cCCCCCeeeCCCCCCCChHHCCHhhcCCC--cHHHHHHHHHHHhcccCCEEEEechHHHhHH
Confidence 0112457799999999999998765532 2234455567778899999999999999985
No 15
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.4e-35 Score=255.91 Aligned_cols=201 Identities=23% Similarity=0.327 Sum_probs=147.1
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCC--CcEEEEeCccccccc-------CCCCC--CCCeEEEEccCCCCCCCCCC
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKG--LKITLAITNFIYKTK-------KPPQP--SDSVQIDTISDGYDDGGFSE 76 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG--~~VT~~t~~~~~~~~-------~~~~~--~~~i~~~~l~~~~~~~~~~~ 76 (219)
|.|||++|||+|||++||++|||+|++|| ++|||++|+.+..++ .+... .++|+++.+|++.+. ....
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~~~~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP-TTED 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC-cccc
Confidence 46999999999999999999999999998 899999999875432 11100 236999999876532 1111
Q ss_pred cccHHHHHHHHHHHhhHHHHHHHHHhhc-----CCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhc
Q 027763 77 AESIDAYLQNMEVAGLKTLAELITKYKS-----SSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHH 151 (219)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~-----~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~ 151 (219)
..+...+ ..+.+.+++.++++.. +++|++|||+|+|++|+.++|+++|||++.|||++|++++++++++.
T Consensus 81 -~~~~~~~----~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~ 155 (481)
T PLN02554 81 -PTFQSYI----DNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQM 155 (481)
T ss_pred -hHHHHHH----HHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhh
Confidence 1111222 2234455666655431 12346899999999999999999999999999999999999998853
Q ss_pred C--c--ccCC---CCCCceecCCCC-CCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccCC
Q 027763 152 G--L--LKLP---VSSTPVSIPGMP-LLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQV 218 (219)
Q Consensus 152 ~--~--~~~~---~~~~~~~~Pg~p-~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~~ 218 (219)
. . ++++ +.++++.+||++ +++.+|+|+.+.+. ..++.+.+..+..++++||++|||+|||+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~----~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~ 226 (481)
T PLN02554 156 LYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK----EWLPLFLAQARRFREMKGILVNTVAELEPQA 226 (481)
T ss_pred hccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH----HHHHHHHHHHHhcccCCEEEEechHHHhHHH
Confidence 2 1 2211 112446799995 89999999876532 3456777888888999999999999999853
No 16
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.8e-34 Score=251.09 Aligned_cols=206 Identities=20% Similarity=0.309 Sum_probs=144.3
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCC--CcEEEEeCccccc-cc----CCC-CCCCCeEEEEccCCCCCCCCCCccc
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKG--LKITLAITNFIYK-TK----KPP-QPSDSVQIDTISDGYDDGGFSEAES 79 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG--~~VT~~t~~~~~~-~~----~~~-~~~~~i~~~~l~~~~~~~~~~~~~~ 79 (219)
++||+++|+|+|||++||++||++|++|| +.|||++|+.+.. .+ .+. ...++|+|+.+|++......+...+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 82 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQS 82 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccC
Confidence 47999999999999999999999999998 9999999997652 11 110 0123699999996432101011223
Q ss_pred HHHHHHHHHHHhhHH----HHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhcCccc
Q 027763 80 IDAYLQNMEVAGLKT----LAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHHGLLK 155 (219)
Q Consensus 80 ~~~~~~~~~~~~~~~----l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~ 155 (219)
....+..+.+.+.+. +++++++...+++|++|||+|.|++|+.++|+++|||+++||+++|++++++++++....+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~~ 162 (468)
T PLN02207 83 VEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHSK 162 (468)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcccc
Confidence 332222222234333 4444443321224569999999999999999999999999999999999998887532111
Q ss_pred -----CCCCCCceecCCC-CCCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 156 -----LPVSSTPVSIPGM-PLLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 156 -----~~~~~~~~~~Pg~-p~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
.++.+..+.+||+ |+++.+|+|+++.+.. . +..+.+..+..+++++||+|||+|||++
T Consensus 163 ~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~---~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~ 226 (468)
T PLN02207 163 DTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED---G-YDAYVKLAILFTKANGILVNSSFDIEPY 226 (468)
T ss_pred ccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc---c-HHHHHHHHHhcccCCEEEEEchHHHhHH
Confidence 1111244679999 6899999998775322 1 4455677778889999999999999985
No 17
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.1e-34 Score=248.98 Aligned_cols=206 Identities=22% Similarity=0.293 Sum_probs=143.0
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCC---cEEEEeCccccc-----ccCCC-CCCCCeEEEEccCCCCCCCCCC-c
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGL---KITLAITNFIYK-----TKKPP-QPSDSVQIDTISDGYDDGGFSE-A 77 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~---~VT~~t~~~~~~-----~~~~~-~~~~~i~~~~l~~~~~~~~~~~-~ 77 (219)
++||+++|||+|||++||++|||+|++||. .||++++..+.. .+.+. ...++|+|+.+|++..+.+.+. .
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~~ 82 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELFV 82 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccccc
Confidence 469999999999999999999999999994 567776654321 11111 0124699999986531101110 1
Q ss_pred ccHHHHHHHHHHHhhHHHHHHHHHhhcC----CC-CccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhc-
Q 027763 78 ESIDAYLQNMEVAGLKTLAELITKYKSS----SN-PIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHH- 151 (219)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~----~~-~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~- 151 (219)
......+..+...+.+.+++.++++..+ ++ |++|||+|.|++|+.++|+++|||+++|||++|++++++++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~~ 162 (475)
T PLN02167 83 KASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPER 162 (475)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHHh
Confidence 1111122223334556777777765321 12 56999999999999999999999999999999999999887753
Q ss_pred -Cccc--CCC--CCCceecCCCC-CCCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 152 -GLLK--LPV--SSTPVSIPGMP-LLELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 152 -~~~~--~~~--~~~~~~~Pg~p-~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
+..+ .+. .++++.+||+| +++..|+|..+.+.. .++.+.+..++..+|+|||+|||+|||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvNTf~eLE~~ 230 (475)
T PLN02167 163 HRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVNSFTELEPN 230 (475)
T ss_pred ccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeeccHHHHHHH
Confidence 2221 111 12446799995 699999997665431 24456677788889999999999999985
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=9.9e-34 Score=245.22 Aligned_cols=197 Identities=20% Similarity=0.270 Sum_probs=137.9
Q ss_pred CCCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCC---CeEEEEcc--CCCCCCCCCCcccH
Q 027763 6 IHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSD---SVQIDTIS--DGYDDGGFSEAESI 80 (219)
Q Consensus 6 ~~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~---~i~~~~l~--~~~~~~~~~~~~~~ 80 (219)
..++|||++|||+|||++||++||++|++||++|||++|+.+..++.+....+ .++++++| +++|+ +.+...++
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~-g~e~~~~~ 81 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPV-GTETVSEI 81 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCC-cccccccC
Confidence 36789999999999999999999999999999999999998876554321111 26677777 67765 43322222
Q ss_pred H-HHHHHHHH---HhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhcCcccC
Q 027763 81 D-AYLQNMEV---AGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHHGLLKL 156 (219)
Q Consensus 81 ~-~~~~~~~~---~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~~ 156 (219)
. .....+.. .+.+.++++++++ +++|||+|+ ++|+.++|+++|||++.||+++|+.++++++ ..+.+
T Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~l~~~-----~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~~~~-- 152 (453)
T PLN02764 82 PVTSADLLMSAMDLTRDQVEVVVRAV-----EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PGGEL-- 152 (453)
T ss_pred ChhHHHHHHHHHHHhHHHHHHHHHhC-----CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-ccccC--
Confidence 1 11112222 2344555665542 469999995 8999999999999999999999999988864 22111
Q ss_pred CCCCCceecCCCCC----CCCCCCCCCCC--CCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 157 PVSSTPVSIPGMPL----LELQDMPSFIG--VQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 157 ~~~~~~~~~Pg~p~----~~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
...+||+|. ++.+|+|+... .....+....++.+..+..++++|||+|||+|||++
T Consensus 153 -----~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~ 214 (453)
T PLN02764 153 -----GVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGN 214 (453)
T ss_pred -----CCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHH
Confidence 122589983 78889987422 111112233455555577889999999999999986
No 19
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2.4e-33 Score=243.34 Aligned_cols=195 Identities=18% Similarity=0.326 Sum_probs=132.3
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCC-CCCeEEEEc--c--CCCCCCCCCCcccHH
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQP-SDSVQIDTI--S--DGYDDGGFSEAESID 81 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~-~~~i~~~~l--~--~~~~~~~~~~~~~~~ 81 (219)
+++|||++|||++||++||++||++|++||++|||+|+..+..++.+... .+.+++..+ | +++|+ +.+...++.
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~-g~~~~~~l~ 81 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPA-GAETTSDIP 81 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCC-Ccccccchh
Confidence 45899999999999999999999999999999999999987766543211 125667655 3 45665 433222332
Q ss_pred HHH-HHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhcCcccCCCCC
Q 027763 82 AYL-QNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHHGLLKLPVSS 160 (219)
Q Consensus 82 ~~~-~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (219)
..+ ..+.. ....+.+.++++.++ .++||||+| +++|+.++|+++|||+++||+++|+.++ +++++.+..
T Consensus 82 ~~l~~~~~~-~~~~~~~~l~~~L~~-~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~~~~------ 151 (442)
T PLN02208 82 ISMDNLLSE-ALDLTRDQVEAAVRA-LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPGGKL------ 151 (442)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhh-CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCcccc------
Confidence 111 11211 122333334443322 257999999 5899999999999999999999998765 555443211
Q ss_pred CceecCCCCC----CCCCCCCCCCCCCCCChHHHHHHHH-HHhccCCCCeEEEcChhhhccC
Q 027763 161 TPVSIPGMPL----LELQDMPSFIGVQGQYPAYFEMVLN-QFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 161 ~~~~~Pg~p~----~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
...+||+|. ++.+|+|.+ +. .+..++.+.+ ..+...+|+|||+|||+|||++
T Consensus 152 -~~~~pglp~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~ 208 (442)
T PLN02208 152 -GVPPPGYPSSKVLFRENDAHAL--AT--LSIFYKRLYHQITTGLKSCDVIALRTCKEIEGK 208 (442)
T ss_pred -CCCCCCCCCcccccCHHHcCcc--cc--cchHHHHHHHHHHhhhccCCEEEEECHHHHHHH
Confidence 123689885 678899964 11 1223344443 3356778999999999999985
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=4.4e-33 Score=241.92 Aligned_cols=193 Identities=22% Similarity=0.319 Sum_probs=132.6
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCC-CCCeEEEEcc----CCCCCCCCCCcccHH
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQP-SDSVQIDTIS----DGYDDGGFSEAESID 81 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~-~~~i~~~~l~----~~~~~~~~~~~~~~~ 81 (219)
.++|||++|||++||+|||++|||+|++||++|||++|+.+..++.+... .++|+++.++ +++|+ +.+...++.
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~-g~e~~~~l~ 81 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPF-GAETASDLP 81 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCC-cccccccch
Confidence 35899999999999999999999999999999999999988766543211 1358885553 56665 333222322
Q ss_pred HH-HHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHHHHHhcCcccCCCCC
Q 027763 82 AY-LQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIYYLVHHGLLKLPVSS 160 (219)
Q Consensus 82 ~~-~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (219)
.. ...+.. ....+.+.++++.++ .++||||+|+ ++|+.++|+++|||++.||++++++++++++.... . +
T Consensus 82 ~~~~~~~~~-a~~~l~~~l~~~L~~-~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~~-----~-~ 152 (446)
T PLN00414 82 NSTKKPIFD-AMDLLRDQIEAKVRA-LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRAE-----L-G 152 (446)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHHhc-CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHhh-----c-C
Confidence 11 111222 223444445444332 3579999995 89999999999999999999999999988763210 0 1
Q ss_pred CceecCCCCC----CCCCCC--CCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 161 TPVSIPGMPL----LELQDM--PSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 161 ~~~~~Pg~p~----~~~~dl--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
..+||+|. ++.+|+ |.++.. ..+.+.+..+...+|+|||+|||+|||++
T Consensus 153 --~~~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 207 (446)
T PLN00414 153 --FPPPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVSIRTCVELEGN 207 (446)
T ss_pred --CCCCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEEEechHHHHHH
Confidence 22577774 444443 333311 12345566677888999999999999985
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=8.5e-32 Score=236.74 Aligned_cols=204 Identities=25% Similarity=0.366 Sum_probs=140.0
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCC-----CCC----CeEEEEcc---CCCCCCCC
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQ-----PSD----SVQIDTIS---DGYDDGGF 74 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~-----~~~----~i~~~~l~---~~~~~~~~ 74 (219)
++.||+++|+|++||+|||++||++|++||++|||++|+.+.+++++.. ..+ .+....+| +++|+ +.
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~-g~ 82 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPE-GC 82 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCC-Cc
Confidence 5679999999999999999999999999999999999998876544210 011 34445555 45665 33
Q ss_pred CCcc--------cHHHHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHHHHHH
Q 027763 75 SEAE--------SIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAVNFIY 146 (219)
Q Consensus 75 ~~~~--------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~~~~ 146 (219)
+... +...+...+.. ....+.+.++++.++ .++||||+|.+++|+.++|+++|||+++||+++++.++++
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~l~~-~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~ 160 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLF-STKYFKDQLEKLLET-TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCAS 160 (482)
T ss_pred ccccccccccccchHHHHHHHHH-HHHHHHHHHHHHHhc-CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHH
Confidence 2211 11123333332 234555556655433 3689999999999999999999999999999999988887
Q ss_pred HHHhc-Ccc-cCCCCCCceecCCCCC---CCCCCCCCCCCCCCCChHHHHHHHHHHhccCCCCeEEEcChhhhccC
Q 027763 147 YLVHH-GLL-KLPVSSTPVSIPGMPL---LELQDMPSFIGVQGQYPAYFEMVLNQFSNADRADLVLVNTFYKLESQ 217 (219)
Q Consensus 147 ~~~~~-~~~-~~~~~~~~~~~Pg~p~---~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNtf~eLE~~ 217 (219)
+++.. ... .....+..+.+||+|+ ++..+++.. + ......+++....+...++++|++|||+|||++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~ 232 (482)
T PLN03007 161 YCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDA--D--EESPMGKFMKEVRESEVKSFGVLVNSFYELESA 232 (482)
T ss_pred HHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCC--C--CchhHHHHHHHHHhhcccCCEEEEECHHHHHHH
Confidence 76532 111 1111123456899973 566777742 1 222344555566667889999999999999975
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.65 E-value=3.9e-16 Score=134.59 Aligned_cols=126 Identities=16% Similarity=0.178 Sum_probs=89.1
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCC--CCCC--------cc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDG--GFSE--------AE 78 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--~~~~--------~~ 78 (219)
+||+++++|+.||++|++.||++|++|||+|||++++.....+++ .+++++.+++..+.. .... ..
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA----AGLEFVPVGGDPDELLASPERNAGLLLLGPG 76 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH----cCCceeeCCCCHHHHHhhhhhcccccccchH
Confidence 489999999999999999999999999999999999976655543 468888876532210 0000 00
Q ss_pred cHHHHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhh
Q 027763 79 SIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTC 140 (219)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a 140 (219)
........+...+...++++++.+. . .++||||+|.+..|+..+|+++|||++.++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 77 LLLGALRLLRREAEAMLDDLVAAAR-D-WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-c-cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 1111222333333444555555442 2 4689999999999999999999999999987663
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.60 E-value=4.9e-15 Score=127.61 Aligned_cols=119 Identities=19% Similarity=0.272 Sum_probs=83.6
Q ss_pred EeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCC-CCCC--cccHHHHHHHHHHH
Q 027763 14 VPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDG-GFSE--AESIDAYLQNMEVA 90 (219)
Q Consensus 14 ~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~--~~~~~~~~~~~~~~ 90 (219)
+.+|++||++|+++||++|.+|||+||+++++.+.+.+++ .+++++.+++..+.. ..+. ..+.......+...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~----~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA----AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDE 76 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH----cCCEEEecCCcCccccccccccCcchHHHHHHHHHH
Confidence 3578999999999999999999999999999988877664 368888887543220 1100 01222233333333
Q ss_pred hhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEech
Q 027763 91 GLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQ 138 (219)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~ 138 (219)
+...+.++++.+. . .++||||+|.+..|+..+|+++|||++.+++.
T Consensus 77 ~~~~~~~l~~~~~-~-~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~ 122 (392)
T TIGR01426 77 AEDVLPQLEEAYK-G-DRPDLIVYDIASWTGRLLARKWDVPVISSFPT 122 (392)
T ss_pred HHHHHHHHHHHhc-C-CCCCEEEECCccHHHHHHHHHhCCCEEEEehh
Confidence 3334444444332 2 35899999999999999999999999988754
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.45 E-value=1.7e-14 Score=127.70 Aligned_cols=143 Identities=25% Similarity=0.340 Sum_probs=92.3
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEE---EEc-----cCCCCCCCCCCc-c
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQI---DTI-----SDGYDDGGFSEA-E 78 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~---~~l-----~~~~~~~~~~~~-~ 78 (219)
+.|++++|+|++||++|+++||++|+++||+||++++..+............+.. ... +++++. +.... .
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPE-GWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhcc-chHHHHH
Confidence 5799999999999999999999999999999999999876654322100111111 111 112222 11000 0
Q ss_pred cHHHHHHHHHHHhhHHHHHHHHHhhc-CCCCccEEEeCCCcccHHHHHHHcC-CCeeEEechhhHHHHHHHHHhc
Q 027763 79 SIDAYLQNMEVAGLKTLAELITKYKS-SSNPIDCVVYDAFLYWALDVAKGFG-LFSAAFFTQTCAVNFIYYLVHH 151 (219)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~l~~-~~~~~d~vI~D~~~~~~~~vA~~lg-iP~v~~~~~~a~~~~~~~~~~~ 151 (219)
........+...+...+++.+..+.. ...++||+|+|.|+.|...+|.+.+ ++...+++.++...++..+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~ 158 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPL 158 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcc
Confidence 11111233444455566665544322 2234999999999999999998885 9999999999888776655443
No 25
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.31 E-value=3.2e-12 Score=94.31 Aligned_cols=122 Identities=17% Similarity=0.264 Sum_probs=76.7
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHHH
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVA 90 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (219)
|++...++.||++|++.|+++|.+|||+|++.+++...+.+.+ .+++++.++.+ . ................+.
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~----~Gl~~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 73 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEA----AGLEFVPIPGD--S-RLPRSLEPLANLRRLARL 73 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHH----TT-EEEESSSC--G-GGGHHHHHHHHHHCHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccc----cCceEEEecCC--c-CcCcccchhhhhhhHHHH
Confidence 6888999999999999999999999999999999988877654 47999988743 0 111100011111001000
Q ss_pred --hhHHHHHHHHHhhc------CC-CCccEEEeCCCcccHHHHHHHcCCCeeEEechh
Q 027763 91 --GLKTLAELITKYKS------SS-NPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQT 139 (219)
Q Consensus 91 --~~~~l~~~l~~l~~------~~-~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~ 139 (219)
....+.+.+++... .+ ...|+++.+.....+..+|+++|||++.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p 131 (139)
T PF03033_consen 74 IRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFP 131 (139)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSG
T ss_pred hhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCC
Confidence 01112222222211 11 235788888888888999999999999886655
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.00 E-value=7e-09 Score=92.28 Aligned_cols=130 Identities=15% Similarity=0.099 Sum_probs=76.4
Q ss_pred ceEEEE-eCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCC--CCCCC-----c-c-
Q 027763 9 AHVLIV-PYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDD--GGFSE-----A-E- 78 (219)
Q Consensus 9 ~hvvv~-p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~--~~~~~-----~-~- 78 (219)
.+|+++ |.++.||++-+..++++|++|||+||++++..... .... ...+++...++...+. ..... . .
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH-LCGNITEIDASLSVEYFKKLVKSSAVFRKRGV 98 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC-CCCCEEEEEcCCChHHHHHHHhhhhHHHhhhh
Confidence 467655 98999999999999999999999999998764211 1110 1235665554311000 00000 0 0
Q ss_pred --cH----HHHHHHHHHHhhHHHH--HHHHHhhcCCCCccEEEeCCCcccHHHHHHHc-CCCeeEEechhh
Q 027763 79 --SI----DAYLQNMEVAGLKTLA--ELITKYKSSSNPIDCVVYDAFLYWALDVAKGF-GLFSAAFFTQTC 140 (219)
Q Consensus 79 --~~----~~~~~~~~~~~~~~l~--~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~l-giP~v~~~~~~a 140 (219)
+. ......+...|...+. ++.+.+..+..++|+||+|.+..++..+|+.+ |+|.+.++++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~ 169 (507)
T PHA03392 99 VADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYG 169 (507)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCC
Confidence 00 0011111223333332 22232321235799999999988888999999 999887766543
No 27
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.84 E-value=1.2e-10 Score=103.42 Aligned_cols=122 Identities=23% Similarity=0.330 Sum_probs=56.0
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCC-cccH-HH-----
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSE-AESI-DA----- 82 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~-~~~~-~~----- 82 (219)
+|+++|. +.||+++|..++++|++|||+||++++.... .+... ...++++..++.+.+....+. ..+. ..
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS-KPSNIRFETYPDPYPEEEFEEIFPEFISKFFSES 78 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-------S-CCEEEE-----TT------TTHHHHHHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc-cccceeeEEEcCCcchHHHhhhhHHHHHHHhhhc
Confidence 6889985 7899999999999999999999999886532 22211 123567776665443311111 1111 00
Q ss_pred -----HHHHHH----------HHhhHHH--HHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEe
Q 027763 83 -----YLQNME----------VAGLKTL--AELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFF 136 (219)
Q Consensus 83 -----~~~~~~----------~~~~~~l--~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~ 136 (219)
....+. ..|...+ .++++.+.. .++|++|+|.+.+|+..+|+.+|+|.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~--~~fDlvI~d~f~~c~~~la~~l~iP~i~~~ 147 (500)
T PF00201_consen 79 SFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS--EKFDLVISDAFDPCGLALAHYLGIPVIIIS 147 (500)
T ss_dssp CCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH--HHHCT-EEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--hccccceEeeccchhHHHHHHhcCCeEEEe
Confidence 000000 0010000 011111211 258999999888888889999999887653
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.53 E-value=1.8e-06 Score=72.12 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=70.2
Q ss_pred ceEEEEeC-CCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHH-
Q 027763 9 AHVLIVPY-PSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQN- 86 (219)
Q Consensus 9 ~hvvv~p~-p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~- 86 (219)
+||++... -|.||+.-.+.|+++| |||+|+|++.....+.+.. .+....+++-.........+........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-----RFPVREIPGLGPIQENGRLDRWKTVRNNI 73 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-----ccCEEEccCceEeccCCccchHHHHHHHH
Confidence 36665554 4889999999999999 6999999998754433322 2344444421111000011111111111
Q ss_pred -HHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhH
Q 027763 87 -MEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCA 141 (219)
Q Consensus 87 -~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~ 141 (219)
+.......++++.+.+.+ .++|+||+|. .+.+...|+..|||++.+......
T Consensus 74 ~~~~~~~~~~~~~~~~l~~--~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 74 RWLARLARRIRREIRWLRE--FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred HhhHHHHHHHHHHHHHHHh--cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHc
Confidence 111112233444444432 3589999995 445678899999999987665533
No 29
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.43 E-value=2.6e-07 Score=80.13 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=47.3
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEcc
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~ 66 (219)
++||+++..|..||++|.+.|+++|.++||+|++++++...+.+.+. ++.|..++
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a----g~~f~~~~ 55 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA----GLAFVAYP 55 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh----Ccceeecc
Confidence 35899999999999999999999999999999999999988777653 46666655
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.38 E-value=3.5e-06 Score=70.87 Aligned_cols=120 Identities=17% Similarity=0.140 Sum_probs=65.9
Q ss_pred EEE-EeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeE-EEEccCCCCCCCCCCcccHHHHHHHHH
Q 027763 11 VLI-VPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQ-IDTISDGYDDGGFSEAESIDAYLQNME 88 (219)
Q Consensus 11 vvv-~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (219)
|++ +...|.||+.|.+.++++|.+ ||+|+++++......+.. .++. +...|. +.-......-+.........
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~----~~~~~~~~~p~-~~~~~~~~~~~~~~~l~~~~ 75 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK----YGFKVFETFPG-IKLKGEDGKVNIVKTLRNKE 75 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh----hcCcceeccCC-ceEeecCCcCcHHHHHHhhc
Confidence 444 456677999999999999999 999999987763322222 1222 222221 10000001111111111000
Q ss_pred HHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechh
Q 027763 89 VAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQT 139 (219)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~ 139 (219)
......+.+..+.+.+ .+||+||+| +-+.+..+|+.+|||.+.+.-+.
T Consensus 76 ~~~~~~~~~~~~~l~~--~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 76 YSPKKAIRREINIIRE--YNPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred cccHHHHHHHHHHHHh--cCCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 1001123333333322 358999999 56667889999999999765443
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=97.99 E-value=0.0002 Score=61.12 Aligned_cols=119 Identities=11% Similarity=0.013 Sum_probs=71.2
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccc-ccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHH
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK-TKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNME 88 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (219)
+|++..-..-||+.|.+.+|++|.++||+|+|+++....+ .+-+ ..++.+..++.. ++.....+.. +....
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~---~~g~~~~~~~~~----~l~~~~~~~~-~~~~~ 74 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIE---KENIPYYSISSG----KLRRYFDLKN-IKDPF 74 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCc---ccCCcEEEEecc----CcCCCchHHH-HHHHH
Confidence 4666666666999999999999999999999998765432 1211 125677666521 1211112211 11111
Q ss_pred HHhhH--HHHHHHHHhhcCCCCccEEEeCCCccc--HHHHHHHcCCCeeEEechhhH
Q 027763 89 VAGLK--TLAELITKYKSSSNPIDCVVYDAFLYW--ALDVAKGFGLFSAAFFTQTCA 141 (219)
Q Consensus 89 ~~~~~--~l~~~l~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~~~~~~a~ 141 (219)
..... ....++++ .+||+||....+.. +...|+.+|+|.+++-.....
T Consensus 75 ~~~~~~~~~~~i~~~-----~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~ 126 (352)
T PRK12446 75 LVMKGVMDAYVRIRK-----LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTP 126 (352)
T ss_pred HHHHHHHHHHHHHHh-----cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCc
Confidence 11111 11233333 35899998765543 468889999999887665433
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.002 Score=55.06 Aligned_cols=123 Identities=14% Similarity=0.095 Sum_probs=73.0
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCC-cEEEEeCccccc-ccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHH
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGL-KITLAITNFIYK-TKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNM 87 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~-~VT~~t~~~~~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 87 (219)
.|++....+-||+.|.+.|++.|.++|+ +|.++.+....+ .+.+ ..++.+..++.+-.. +..........+..+
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~---~~~~~~~~I~~~~~~-~~~~~~~~~~~~~~~ 77 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVK---QYGIEFELIPSGGLR-RKGSLKLLKAPFKLL 77 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeecc---ccCceEEEEeccccc-ccCcHHHHHHHHHHH
Confidence 4666677777999999999999999999 577775544333 2222 136777777642111 111111222222222
Q ss_pred HHHhhHHHHHHHHHhhcCCCCccEEEeCCCccc--HHHHHHHcCCCeeEEechhhHHH
Q 027763 88 EVAGLKTLAELITKYKSSSNPIDCVVYDAFLYW--ALDVAKGFGLFSAAFFTQTCAVN 143 (219)
Q Consensus 88 ~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~~~~~~a~~~ 143 (219)
.. ....++++++. +||+||.=..+.. +...|..+|||.+..-+-.....
T Consensus 78 ~~--~~~a~~il~~~-----kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ 128 (357)
T COG0707 78 KG--VLQARKILKKL-----KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGL 128 (357)
T ss_pred HH--HHHHHHHHHHc-----CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcch
Confidence 21 22345556653 5799997544433 45777899999999866554433
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.50 E-value=0.0024 Score=53.75 Aligned_cols=115 Identities=19% Similarity=0.156 Sum_probs=65.2
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCC-CCCCCCCCcccHHHHHHHHH
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDG-YDDGGFSEAESIDAYLQNME 88 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 88 (219)
+|++......||......|++.|.++||+|++++....... ... ...++++..++.. ... ......+...+....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 76 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA-RLV-PKAGIPLHTIPVGGLRR--KGSLKKLKAPFKLLK 76 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh-hcc-cccCCceEEEEecCcCC--CChHHHHHHHHHHHH
Confidence 36666666679999999999999999999999987643211 100 0124666665521 111 000111111111111
Q ss_pred HHhhHHHHHHHHHhhcCCCCccEEEeCCC--cccHHHHHHHcCCCeeEE
Q 027763 89 VAGLKTLAELITKYKSSSNPIDCVVYDAF--LYWALDVAKGFGLFSAAF 135 (219)
Q Consensus 89 ~~~~~~l~~~l~~l~~~~~~~d~vI~D~~--~~~~~~vA~~lgiP~v~~ 135 (219)
. ...+.+++++ .+||+|++..- ..++...|+..|+|.+..
T Consensus 77 ~--~~~~~~~i~~-----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 77 G--VLQARKILKK-----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred H--HHHHHHHHHh-----cCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 1 1123333432 35899997642 233567788889999864
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.34 E-value=0.0059 Score=51.39 Aligned_cols=112 Identities=18% Similarity=0.091 Sum_probs=64.6
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccc-ccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHH--
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK-TKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQN-- 86 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~-~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-- 86 (219)
||+++.....||+.....|++.|.++||+|++++.+.... .+.. ..++++..++-.-.. + ......+..
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~---~~g~~~~~i~~~~~~-~----~~~~~~l~~~~ 73 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVP---KAGIEFYFIPVGGLR-R----KGSFRLIKTPL 73 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccc---cCCCceEEEeccCcC-C----CChHHHHHHHH
Confidence 6888887788999977899999999999999998643211 1111 135666655421100 0 111111111
Q ss_pred -HHHHhhHHHHHHHHHhhcCCCCccEEEeCCCc--ccHHHHHHHcCCCeeEE
Q 027763 87 -MEVAGLKTLAELITKYKSSSNPIDCVVYDAFL--YWALDVAKGFGLFSAAF 135 (219)
Q Consensus 87 -~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~--~~~~~vA~~lgiP~v~~ 135 (219)
+... ...+.+++++ .+||+|++.... .++..+++..|+|.+.+
T Consensus 74 ~~~~~-~~~l~~~i~~-----~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 74 KLLKA-VFQARRILKK-----FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHH-HHHHHHHHHh-----cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 1111 1123333332 368999986533 23445678889999764
No 35
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.14 E-value=0.012 Score=49.91 Aligned_cols=116 Identities=15% Similarity=0.152 Sum_probs=65.9
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccC-CCCCCCCCCcccHHHHHHHH
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISD-GYDDGGFSEAESIDAYLQNM 87 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~~~~~~~ 87 (219)
++|+++.-...||...+..|++.|.++||+|++++......... . ...+++++.++. +... ......+......+
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 77 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARL-V-PKAGIEFHFIPSGGLRR--KGSLANLKAPFKLL 77 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhc-c-ccCCCcEEEEeccCcCC--CChHHHHHHHHHHH
Confidence 46888876666999999999999999999999998865221110 0 012566666542 1111 00000011111111
Q ss_pred HHHhhHHHHHHHHHhhcCCCCccEEEeCCCc-cc-HHHHHHHcCCCeeEE
Q 027763 88 EVAGLKTLAELITKYKSSSNPIDCVVYDAFL-YW-ALDVAKGFGLFSAAF 135 (219)
Q Consensus 88 ~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~~ 135 (219)
.. ...+.+++++ .+||+|++.... .| +..+++..++|.+..
T Consensus 78 -~~-~~~~~~~ik~-----~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 78 -KG-VLQARKILKR-----FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred -HH-HHHHHHHHHh-----cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 10 1122333332 368999988632 44 356677889999865
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=96.93 E-value=0.0077 Score=52.06 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=32.6
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
++|++..-...||+.|- .|+++|.++|.+|+++....
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg 42 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG 42 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc
Confidence 57888887777999999 99999999999999988763
No 37
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=96.91 E-value=0.033 Score=47.97 Aligned_cols=104 Identities=11% Similarity=0.051 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHhh
Q 027763 24 PTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVAGLKTLAELITKYK 103 (219)
Q Consensus 24 P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 103 (219)
++.+||+.|+++||+|+++|....... . .+++.+.++..-.. ......-...+.....+ .. .+...+..+.
T Consensus 12 ~~~~la~~L~~~G~~v~~~~~~~~~~~-~-----~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 82 (396)
T cd03818 12 QFRHLAPALAAQGHEVVFLTEPNAAPP-P-----GGVRVVRYRPPRGP-TSGTHPYLREFEEAVLR-GQ-AVARALLALR 82 (396)
T ss_pred hHHHHHHHHHHCCCEEEEEecCCCCCC-C-----CCeeEEEecCCCCC-CCCCCccchhHHHHHHH-HH-HHHHHHHHHH
Confidence 377899999999999999988764321 1 14777776532111 10000011111111111 11 2222233332
Q ss_pred cCCCCccEEEeCCCcccHHHHHHHc-CCCeeEEe
Q 027763 104 SSSNPIDCVVYDAFLYWALDVAKGF-GLFSAAFF 136 (219)
Q Consensus 104 ~~~~~~d~vI~D~~~~~~~~vA~~l-giP~v~~~ 136 (219)
.++-+||+|++-....++..+.+.+ ++|.+.++
T Consensus 83 ~~~~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 83 AKGFRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred hcCCCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 2334689999887666666777775 48887743
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=95.96 E-value=0.063 Score=45.36 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=46.4
Q ss_pred CCceEEEEe--CCCccChhHHHHHHHHHHhC--CCcEEEEeCcccccccCCCCCCCCeEEEEccC
Q 027763 7 HRAHVLIVP--YPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKKPPQPSDSVQIDTISD 67 (219)
Q Consensus 7 ~~~hvvv~p--~p~~GH~~P~l~La~~L~~r--G~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~ 67 (219)
++++|+++. ..|-||+-=++.+|+.|+.. |++|++++.........- ..+++++.+|.
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~---~~gVd~V~LPs 69 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG---PAGVDFVKLPS 69 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC---cccCceEecCc
Confidence 345899998 56779999999999999996 999999998765543332 25799999984
No 39
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=95.87 E-value=0.29 Score=42.68 Aligned_cols=58 Identities=17% Similarity=0.112 Sum_probs=38.9
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEcc
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~ 66 (219)
+.+|.++...-.|+-.=+..+|+.|+++||+||+++....... .......+++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~-~~~~~~~~v~~~~~~ 60 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPH-DEILSNPNITIHPLP 60 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCC-HHHhcCCCEEEEECC
Confidence 4466777766667777778899999999999999986532211 000012467777765
No 40
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.84 E-value=0.25 Score=40.81 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=26.2
Q ss_pred ccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 19 QGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 19 ~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
-|+-.-...|++.|.++||+|+++++....
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 44 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGEDP 44 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCCC
Confidence 488888999999999999999999886543
No 41
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.75 E-value=0.27 Score=42.57 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=19.9
Q ss_pred HHHHHHHHHhCCCcEEEEeCcc
Q 027763 25 TFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 25 ~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+.+|++.|.++||+|+++|+..
T Consensus 21 ~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 21 TGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred HHHHHHHHHHCCCeEEEEecCC
Confidence 5799999999999999999764
No 42
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.70 E-value=0.059 Score=44.48 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=35.7
Q ss_pred CCCccChhHHHHHHHHHHhCCCcEEEEeCccccc---ccCCCCCCCCeEEEEccC
Q 027763 16 YPSQGHINPTFQFAKRLASKGLKITLAITNFIYK---TKKPPQPSDSVQIDTISD 67 (219)
Q Consensus 16 ~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~---~~~~~~~~~~i~~~~l~~ 67 (219)
--|.||+.=.+.||++|.++|++|+|++...... .++. .++.+..+++
T Consensus 11 ~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~~~~~~i~~----~g~~v~~~~~ 61 (279)
T TIGR03590 11 EIGLGHVMRCLTLARALHAQGAEVAFACKPLPGDLIDLLLS----AGFPVYELPD 61 (279)
T ss_pred cccccHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH----cCCeEEEecC
Confidence 3478999999999999999999999999875332 2222 3466666653
No 43
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.69 E-value=0.15 Score=43.33 Aligned_cols=108 Identities=15% Similarity=0.174 Sum_probs=57.6
Q ss_pred ccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHHHhhHHHHHH
Q 027763 19 QGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVAGLKTLAEL 98 (219)
Q Consensus 19 ~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (219)
-|+-..+.+|++.|+++||+|+++++..............++.+..++.. +. ..............+. ..+...
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~----~~~~~~ 94 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAG-PA-EYLPKEELWPYLDEFA----DDLLRF 94 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccc-cc-cCCChhhcchhHHHHH----HHHHHH
Confidence 37888999999999999999999987543322110001235666655421 11 0000001111111111 112222
Q ss_pred HHHhhcCCCCccEEEeCCCc-cc-HHHHHHHcCCCeeEE
Q 027763 99 ITKYKSSSNPIDCVVYDAFL-YW-ALDVAKGFGLFSAAF 135 (219)
Q Consensus 99 l~~l~~~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~~ 135 (219)
++. ...++|+|++.... .+ +..+++.+|+|++..
T Consensus 95 ~~~---~~~~~Div~~~~~~~~~~~~~~~~~~~~~~i~~ 130 (398)
T cd03800 95 LRR---EGGRPDLIHAHYWDSGLVALLLARRLGIPLVHT 130 (398)
T ss_pred HHh---cCCCccEEEEecCccchHHHHHHhhcCCceEEE
Confidence 222 11268999876533 33 567788999998754
No 44
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.62 E-value=0.12 Score=44.03 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=29.8
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
++|++..-...||+.|-. +++.|.++++++.++...
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~ 37 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVG 37 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEc
Confidence 368888877779999998 999999988888777643
No 45
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.21 E-value=0.054 Score=39.48 Aligned_cols=96 Identities=15% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHHHhhHHHHHHHHHhh
Q 027763 24 PTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVAGLKTLAELITKYK 103 (219)
Q Consensus 24 P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 103 (219)
=+.+|++.|+++||+||+++.......-.. ...++++..++- +... .... ..... ..+.+++..
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~-~~~~-~~~~~--------~~~~~~l~~-- 69 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEE--EEDGVRVHRLPL--PRRP-WPLR-LLRFL--------RRLRRLLAA-- 69 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SE--EETTEEEEEE----S-SS-SGGG-HCCHH--------HHHHHHCHH--
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccccc--ccCCceEEeccC--Cccc-hhhh-hHHHH--------HHHHHHHhh--
Confidence 367899999999999999997654332110 123577777652 2101 0000 00011 123333311
Q ss_pred cCCCCccEEEeCCCc-ccHHHHHH-HcCCCeeEEe
Q 027763 104 SSSNPIDCVVYDAFL-YWALDVAK-GFGLFSAAFF 136 (219)
Q Consensus 104 ~~~~~~d~vI~D~~~-~~~~~vA~-~lgiP~v~~~ 136 (219)
. ..++|+|.+-... .+...+++ ..|+|.+.-.
T Consensus 70 ~-~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 70 R-RERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp C-T---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred h-ccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 1 2468999866543 23445555 8899987654
No 46
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=95.07 E-value=0.57 Score=38.90 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=26.5
Q ss_pred ccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 19 QGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 19 ~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
.|+-.-+..+++.|+++||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHEVTVITGSPNY 43 (394)
T ss_pred CCcceeHHHHHHHHHhCCceEEEEecCCCc
Confidence 489999999999999999999999876543
No 47
>PLN00142 sucrose synthase
Probab=95.01 E-value=0.39 Score=45.38 Aligned_cols=105 Identities=12% Similarity=0.129 Sum_probs=55.2
Q ss_pred HHHHHHHhCCCcEE----EEeCccccc-------ccCCCCCCCCeEEEEccCCCCCCCCC---CcccHHHHHHHHHHHhh
Q 027763 27 QFAKRLASKGLKIT----LAITNFIYK-------TKKPPQPSDSVQIDTISDGYDDGGFS---EAESIDAYLQNMEVAGL 92 (219)
Q Consensus 27 ~La~~L~~rG~~VT----~~t~~~~~~-------~~~~~~~~~~i~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 92 (219)
+|+++|+++||+|+ ++|--.... +++.....++.+++.+|-+-...-.. ...++..++..+..
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~~~~~~~~~e~v~~~~~~~I~rvP~g~~~~~l~~~i~ke~l~p~L~~f~~--- 395 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAKGTTCNQRLEKVSGTEHSHILRVPFRTEKGILRKWISRFDVWPYLETFAE--- 395 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCccCCcccCcceeccCCCceEEEecCCCCCccccccccCHHHHHHHHHHHHH---
Confidence 35578889999875 666422211 11111112467777777542210011 11222223333322
Q ss_pred HHHHHHHHHhhcCCCCccEEEeCCCcc-c-HHHHHHHcCCCeeEEec
Q 027763 93 KTLAELITKYKSSSNPIDCVVYDAFLY-W-ALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 93 ~~l~~~l~~l~~~~~~~d~vI~D~~~~-~-~~~vA~~lgiP~v~~~~ 137 (219)
...+.+.++. ..+||+|.+-+... + |..+|+++|||.+...-
T Consensus 396 ~~~~~~~~~~---~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 396 DAASEILAEL---QGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred HHHHHHHHhc---CCCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 1222332322 24689999887664 5 46999999999986544
No 48
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=94.98 E-value=1.2 Score=42.17 Aligned_cols=120 Identities=14% Similarity=0.143 Sum_probs=66.1
Q ss_pred ceEEEEeCCC-------------ccChhHHHHHHHH--------HHhCCC----cEEEEeCccccc-------ccCCCCC
Q 027763 9 AHVLIVPYPS-------------QGHINPTFQFAKR--------LASKGL----KITLAITNFIYK-------TKKPPQP 56 (219)
Q Consensus 9 ~hvvv~p~p~-------------~GH~~P~l~La~~--------L~~rG~----~VT~~t~~~~~~-------~~~~~~~ 56 (219)
.+|+++..-+ -|+..=.+++|++ |+++|| +|+++|-..... .++....
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~~~~~~~~e~~~~ 335 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEGTTCNQRLEKVYG 335 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccccccccccccccC
Confidence 4677765444 4777778888887 468999 677888643221 1111112
Q ss_pred CCCeEEEEccCCCCCCC--CC---CcccHHHHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcc-c-HHHHHHHcC
Q 027763 57 SDSVQIDTISDGYDDGG--FS---EAESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLY-W-ALDVAKGFG 129 (219)
Q Consensus 57 ~~~i~~~~l~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~-~-~~~vA~~lg 129 (219)
.++++++.+|.+-.. + .. ...++..++..+.. ...+.+.++. ..+||+|++-+... + +..+|+++|
T Consensus 336 ~~~~~I~rvp~g~~~-~~~~~~~i~k~~l~p~l~~f~~---~~~~~~~~~~---~~~pDlIHahy~d~glva~lla~~lg 408 (784)
T TIGR02470 336 TEHAWILRVPFRTEN-GIILRNWISRFEIWPYLETFAE---DAEKEILAEL---QGKPDLIIGNYSDGNLVASLLARKLG 408 (784)
T ss_pred CCceEEEEecCCCCc-ccccccccCHHHHHHHHHHHHH---HHHHHHHHhc---CCCCCEEEECCCchHHHHHHHHHhcC
Confidence 357888777754221 1 01 11222222333322 1222222221 24689999877553 4 469999999
Q ss_pred CCeeEE
Q 027763 130 LFSAAF 135 (219)
Q Consensus 130 iP~v~~ 135 (219)
||.+..
T Consensus 409 VP~v~t 414 (784)
T TIGR02470 409 VTQCTI 414 (784)
T ss_pred CCEEEE
Confidence 996543
No 49
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=94.59 E-value=0.75 Score=44.66 Aligned_cols=117 Identities=15% Similarity=0.047 Sum_probs=65.1
Q ss_pred cChhHHHHHHHHHHhCC--CcEEEEeCccccccc-----CC---------------CCCCCCeEEEEccCCCCCCCCCCc
Q 027763 20 GHINPTFQFAKRLASKG--LKITLAITNFIYKTK-----KP---------------PQPSDSVQIDTISDGYDDGGFSEA 77 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG--~~VT~~t~~~~~~~~-----~~---------------~~~~~~i~~~~l~~~~~~~~~~~~ 77 (219)
|+..=.++||++|+++| |+|+++|-....+.. .. ....++++++.+|.|-.. ..-..
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~~~~~~~~~~g~rIvRip~GP~~-~~l~K 274 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSENDGDEMGESSGAYIIRIPFGPRD-KYIPK 274 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCccccccccccccccccccCCCCeEEEEeccCCCC-CCcCH
Confidence 46666799999999998 899999975432211 00 001247888888755221 11122
Q ss_pred ccHHHHHHHHHHHhhHHHHH----HHHHhhc-CCCCccEEEeCCCc-cc-HHHHHHHcCCCeeEEec
Q 027763 78 ESIDAYLQNMEVAGLKTLAE----LITKYKS-SSNPIDCVVYDAFL-YW-ALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 78 ~~~~~~~~~~~~~~~~~l~~----~l~~l~~-~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~~~~ 137 (219)
..+...+..|...+...+.. +.+++.. ....||+|-+-+.. .+ +..+++.+|||.+.-.-
T Consensus 275 e~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~~pDvIHaHyw~sG~aa~~L~~~lgVP~V~T~H 341 (1050)
T TIGR02468 275 EELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGH 341 (1050)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCCCCCEEEECcchHHHHHHHHHHhhCCCEEEECc
Confidence 23333444444332222221 1222211 11248999877544 34 46889999999876443
No 50
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=94.30 E-value=0.95 Score=38.87 Aligned_cols=112 Identities=12% Similarity=0.074 Sum_probs=57.7
Q ss_pred CccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHHHhhHHHHH
Q 027763 18 SQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVAGLKTLAE 97 (219)
Q Consensus 18 ~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 97 (219)
.-|--.=..+|+++|+++||+||++++......-.......++++..++.. +-.+. ........+..+. ...++.
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~-~~~~~~~~~~~~~---~~~~~~ 93 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAG-PYEGL-DKEDLPTQLCAFT---GGVLRA 93 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCC-CcccC-CHHHHHHHHHHHH---HHHHHH
Confidence 346778899999999999999999997643211111001246777665421 10010 0001111111111 112223
Q ss_pred HHHHhhcCCCCccEEEeCCC-ccc-HHHHHHHcCCCeeEEec
Q 027763 98 LITKYKSSSNPIDCVVYDAF-LYW-ALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 98 ~l~~l~~~~~~~d~vI~D~~-~~~-~~~vA~~lgiP~v~~~~ 137 (219)
+++.. ..++|+|-+-.. ..+ +..+++.+++|.+..+-
T Consensus 94 ~~~~~---~~~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h 132 (405)
T TIGR03449 94 EARHE---PGYYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAH 132 (405)
T ss_pred Hhhcc---CCCCCeEEechHHHHHHHHHHHHhcCCCEEEecc
Confidence 33221 135898865442 233 45667889999876543
No 51
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.96 E-value=1.3 Score=33.85 Aligned_cols=92 Identities=10% Similarity=0.065 Sum_probs=53.0
Q ss_pred hCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCC-CCCCC-CCcccHHHHHHHHHHHhhHHHHHHHHHhhcCCCCccE
Q 027763 34 SKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGY-DDGGF-SEAESIDAYLQNMEVAGLKTLAELITKYKSSSNPIDC 111 (219)
Q Consensus 34 ~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~ 111 (219)
++||+|++++....... . ++++.+.+...- +..+. ....++. ..+.+ . ....+.+.+|.+++-.||+
T Consensus 1 q~gh~v~fl~~~~~~~~-~-----~GV~~~~y~~~~~~~~~~~~~~~~~e---~~~~r-g-~av~~a~~~L~~~Gf~PDv 69 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI-P-----PGVRVVRYRPPRGPTPGTHPYVRDFE---AAVLR-G-QAVARAARQLRAQGFVPDV 69 (171)
T ss_pred CCCCEEEEEecCCCCCC-C-----CCcEEEEeCCCCCCCCCCCcccccHH---HHHHH-H-HHHHHHHHHHHHcCCCCCE
Confidence 47999999995543322 1 367777664210 10011 1111111 11211 1 2334444555555556899
Q ss_pred EEeCCCcccHHHHHHHc-CCCeeEEe
Q 027763 112 VVYDAFLYWALDVAKGF-GLFSAAFF 136 (219)
Q Consensus 112 vI~D~~~~~~~~vA~~l-giP~v~~~ 136 (219)
||.-.....+.-+-+.+ ++|.+.|+
T Consensus 70 I~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 70 IIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred EEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 99999877788888999 89998874
No 52
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=93.94 E-value=1.3 Score=31.80 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=55.7
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHHH
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVA 90 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (219)
|+++.-....| ..++++.|.++|++|++++.......... ..++.+..++.+ . . .....+.
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~---~~~i~~~~~~~~--~---k---~~~~~~~----- 62 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI---IEGIKVIRLPSP--R---K---SPLNYIK----- 62 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH---hCCeEEEEecCC--C---C---ccHHHHH-----
Confidence 56666555555 56889999999999999999544322111 246787776421 1 0 1111111
Q ss_pred hhHHHHHHHHHhhcCCCCccEEEeCCCcc-c--HHHHHHHcC-CCeeE
Q 027763 91 GLKTLAELITKYKSSSNPIDCVVYDAFLY-W--ALDVAKGFG-LFSAA 134 (219)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~~d~vI~D~~~~-~--~~~vA~~lg-iP~v~ 134 (219)
.. .+..++++ .+||+|.+-...+ + +...++..| +|.+.
T Consensus 63 ~~-~l~k~ik~-----~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~ 104 (139)
T PF13477_consen 63 YF-RLRKIIKK-----EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIY 104 (139)
T ss_pred HH-HHHHHhcc-----CCCCEEEEecCChHHHHHHHHHHHcCCCCEEE
Confidence 11 33444443 3589997666543 2 223456667 66663
No 53
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=93.69 E-value=1.9 Score=36.63 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=26.0
Q ss_pred eEEEE-eCCCc-cChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIV-PYPSQ-GHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~-p~p~~-GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+|+++ |.... |=-.-+..||++|+++||+|+++++..
T Consensus 2 kIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~ 40 (392)
T cd03805 2 RVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHH 40 (392)
T ss_pred eEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 45544 33333 333456899999999999999999753
No 54
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=93.11 E-value=1.9 Score=35.19 Aligned_cols=53 Identities=13% Similarity=0.093 Sum_probs=38.1
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEcc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~ 66 (219)
|+++.....|+..-+..+++.|.++||+|++++.......... ..+++...++
T Consensus 2 Il~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~---~~~~~~~~~~ 54 (359)
T cd03808 2 ILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELE---ALGVKVIPIP 54 (359)
T ss_pred eeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccc---cCCceEEecc
Confidence 5666655678889999999999999999999998765432111 2356666555
No 55
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=92.50 E-value=0.85 Score=38.76 Aligned_cols=105 Identities=19% Similarity=0.148 Sum_probs=62.1
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCcccc-cccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHHHhhHHHHHH
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITNFIY-KTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVAGLKTLAEL 98 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~~~~-~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (219)
-|+.-+.++.++|.++||+|.+.+-.... ..+-. .-++.+..+... + .+ ..........+ ...+-++
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~---~yg~~y~~iG~~----g-~~--~~~Kl~~~~~R--~~~l~~~ 78 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLD---LYGIDYIVIGKH----G-DS--LYGKLLESIER--QYKLLKL 78 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHH---HcCCCeEEEcCC----C-CC--HHHHHHHHHHH--HHHHHHH
Confidence 48999999999999999999887655322 11111 135677665421 1 11 11112222211 1123333
Q ss_pred HHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhHH
Q 027763 99 ITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCAV 142 (219)
Q Consensus 99 l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~~ 142 (219)
+++ .+||++|+ .....+..+|.-+|+|.+.|.=..-+.
T Consensus 79 ~~~-----~~pDv~is-~~s~~a~~va~~lgiP~I~f~D~e~a~ 116 (335)
T PF04007_consen 79 IKK-----FKPDVAIS-FGSPEAARVAFGLGIPSIVFNDTEHAI 116 (335)
T ss_pred HHh-----hCCCEEEe-cCcHHHHHHHHHhCCCeEEEecCchhh
Confidence 332 35799996 333567789999999999997765443
No 56
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=90.81 E-value=4 Score=35.79 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=54.6
Q ss_pred cChhHHHHHHHHHHhCCC--cEEEEeCcccccc----c-CCC-CCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHHHh
Q 027763 20 GHINPTFQFAKRLASKGL--KITLAITNFIYKT----K-KPP-QPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVAG 91 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~--~VT~~t~~~~~~~----~-~~~-~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (219)
|=-.=+.+|+++|+++|| +|+++|....... . ... ....+++++.++.+ +. ...........+..+
T Consensus 27 G~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~-~~-~~~~~~~~~~~~~~~---- 100 (439)
T TIGR02472 27 GQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFG-PR-RYLRKELLWPYLDEL---- 100 (439)
T ss_pred CcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCC-CC-CCcChhhhhhhHHHH----
Confidence 334568899999999997 9999996421110 0 000 00245777666532 11 010111111111111
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCc-cc-HHHHHHHcCCCeeEEe
Q 027763 92 LKTLAELITKYKSSSNPIDCVVYDAFL-YW-ALDVAKGFGLFSAAFF 136 (219)
Q Consensus 92 ~~~l~~~l~~l~~~~~~~d~vI~D~~~-~~-~~~vA~~lgiP~v~~~ 136 (219)
...+...+++ ...++|+|-+-... .+ +..+++.+|+|.+...
T Consensus 101 ~~~l~~~~~~---~~~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 101 ADNLLQHLRQ---QGHLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred HHHHHHHHHH---cCCCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 1123333332 12358999875432 33 4567788999986644
No 57
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.18 E-value=0.66 Score=38.23 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=33.5
Q ss_pred eEEEEe----CCCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 10 HVLIVP----YPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 10 hvvv~p----~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
||++++ --|.||+.=++.||++|..+|+.++|++.+.+..
T Consensus 2 ~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 2 KVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred cEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 566665 3467999999999999999999999999987443
No 58
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=88.90 E-value=7.3 Score=33.48 Aligned_cols=100 Identities=14% Similarity=0.204 Sum_probs=52.9
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCC-CCCCCCCCcccHHHHHHHHHHHhhHHHHHH
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDG-YDDGGFSEAESIDAYLQNMEVAGLKTLAEL 98 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (219)
|--.-..+|++.|+++||+|+++++.......... ...++++..+|.. ... . ..+...... ...++..
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~-~~~~i~v~~~p~~~~~~-~----~~~~~~~~~-----~~~l~~~ 83 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRY-LTNGLKVYYLPFVVFYN-Q----STLPTFFGT-----FPLLRNI 83 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCccc-ccCceeEEEecceeccC-C----ccccchhhh-----HHHHHHH
Confidence 45567899999999999999999975322110000 0135666665521 111 0 001111110 1123333
Q ss_pred HHHhhcCCCCccEEEeCC-Cccc---HHHHHHHcCCCeeEE
Q 027763 99 ITKYKSSSNPIDCVVYDA-FLYW---ALDVAKGFGLFSAAF 135 (219)
Q Consensus 99 l~~l~~~~~~~d~vI~D~-~~~~---~~~vA~~lgiP~v~~ 135 (219)
+++ .++|+|-+-. ...+ +..+++.+|+|.+..
T Consensus 84 ~~~-----~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t 119 (398)
T cd03796 84 LIR-----ERITIVHGHQAFSALAHEALLHARTMGLKTVFT 119 (398)
T ss_pred HHh-----cCCCEEEECCCCchHHHHHHHHhhhcCCcEEEE
Confidence 332 3579886443 3222 456688899998764
No 59
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=88.68 E-value=0.63 Score=39.15 Aligned_cols=37 Identities=24% Similarity=0.355 Sum_probs=29.8
Q ss_pred eEEEEeCCCc-cChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIVPYPSQ-GHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~p~p~~-GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+|+++.+|.. |.-.-..+|++.|+++||+|++++...
T Consensus 2 ki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 2 KIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred ceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 4566655444 777889999999999999999998754
No 60
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=88.32 E-value=0.79 Score=39.19 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=30.8
Q ss_pred CceEEEEeCCC-ccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 8 RAHVLIVPYPS-QGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 8 ~~hvvv~p~p~-~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
.++|+++.... .||..+...|+++|.++|++|.++...
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 45788887554 499999999999999999987766554
No 61
>PLN02275 transferase, transferring glycosyl groups
Probab=87.51 E-value=17 Score=31.01 Aligned_cols=124 Identities=10% Similarity=-0.104 Sum_probs=62.0
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCC-cEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHH
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGL-KITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQN 86 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~-~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 86 (219)
+.||++. +-.|.---|..+++.|+++|+ +||+++....... .......++++..++. +. ...........+..
T Consensus 6 ~~~~~~~--~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~-~~~~~~~~v~v~r~~~--~~-~~~~~~~~~~~~~~ 79 (371)
T PLN02275 6 RAAVVVL--GDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPI-PALLNHPSIHIHLMVQ--PR-LLQRLPRVLYALAL 79 (371)
T ss_pred EEEEEEe--cCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCC-HHHhcCCcEEEEECCC--cc-cccccccchHHHHH
Confidence 3455555 567888889999999999885 7999976442211 1111124688877763 11 11111111111111
Q ss_pred HHHHhhHHHHHHHHHhhcCCCCccEEEeC-CCccc----HHHHHHHcCCCeeEEech
Q 027763 87 MEVAGLKTLAELITKYKSSSNPIDCVVYD-AFLYW----ALDVAKGFGLFSAAFFTQ 138 (219)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~~~~d~vI~D-~~~~~----~~~vA~~lgiP~v~~~~~ 138 (219)
+... ...+..++..+.....++|+|++- ....+ +..+++..++|.++.+..
T Consensus 80 ~~~~-~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 135 (371)
T PLN02275 80 LLKV-AIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHN 135 (371)
T ss_pred HHHH-HHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCC
Confidence 1110 011222222211112468988863 22222 235566789999876543
No 62
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=87.16 E-value=6.4 Score=32.66 Aligned_cols=96 Identities=16% Similarity=0.102 Sum_probs=53.7
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCcccccc-cCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHHHhhHHHHHH
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITNFIYKT-KKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVAGLKTLAEL 98 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~-~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 98 (219)
|--.-...|++.|+++||+|++++....... +. ..+++++.++. .. ......+..+ ..+...
T Consensus 11 G~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~----~~~~~~~~~~~--~~------~~~~~~~~~~-----~~l~~~ 73 (355)
T cd03819 11 GVERGTLELARALVERGHRSLVASAGGRLVAELE----AEGSRHIKLPF--IS------KNPLRILLNV-----ARLRRL 73 (355)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHH----hcCCeEEEccc--cc------cchhhhHHHH-----HHHHHH
Confidence 5557789999999999999999987542211 11 12455555431 11 0111111111 122333
Q ss_pred HHHhhcCCCCccEEEeCC-CcccH-HHHHHHcCCCeeEEec
Q 027763 99 ITKYKSSSNPIDCVVYDA-FLYWA-LDVAKGFGLFSAAFFT 137 (219)
Q Consensus 99 l~~l~~~~~~~d~vI~D~-~~~~~-~~vA~~lgiP~v~~~~ 137 (219)
+++ .++|+|++.. ...|. ...++.+|+|.+..+.
T Consensus 74 ~~~-----~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 74 IRE-----EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred HHH-----cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 332 3579998765 33454 4566788999886554
No 63
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=86.48 E-value=4.6 Score=31.55 Aligned_cols=39 Identities=15% Similarity=0.085 Sum_probs=34.7
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+.+|++.+.++-.|-....=++..|.++|++|+++...-
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~ 120 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDV 120 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCC
Confidence 568999999999999999999999999999998876543
No 64
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=86.29 E-value=1.3 Score=36.71 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=26.4
Q ss_pred ccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 19 QGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 19 ~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
.|+-+.+..|+++|+++||+|+++++...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 59999999999999999999999998753
No 65
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=86.28 E-value=0.9 Score=33.44 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=23.1
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
|=-.-+..|+++|+++||+||++++....
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-TT
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCCc
Confidence 66677899999999999999999876543
No 66
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=85.38 E-value=13 Score=30.17 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=26.8
Q ss_pred ccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 19 QGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 19 ~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
.|+..-+..|++.|.+.||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 689999999999999999999999987543
No 67
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=85.12 E-value=1.5 Score=30.92 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=32.1
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
+|++.+.++-.|...+.-++..|.++|++|+++-..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 478899999999999999999999999999887654
No 68
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=84.25 E-value=2.4 Score=31.11 Aligned_cols=43 Identities=9% Similarity=0.041 Sum_probs=37.2
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
++++|++...++-+|-.-..-++..|.++|++|+++-..-..+
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e 44 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQE 44 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 3568999999999999999999999999999999987765433
No 69
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=84.13 E-value=2.3 Score=37.55 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=30.3
Q ss_pred CCCceEEEEeCC----C-ccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 6 IHRAHVLIVPYP----S-QGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 6 ~~~~hvvv~p~p----~-~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+++||+++..+ . -|=-+=+.+|++.|.++||+|+++++..
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 356788887432 1 1323567899999999999999999764
No 70
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=83.09 E-value=2.1 Score=35.33 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=27.2
Q ss_pred CCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 17 PSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 17 p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
...|+-.-...+++.|+++||+|+++++...
T Consensus 12 ~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 12 QVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred CCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 4568999999999999999999999987653
No 71
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=81.16 E-value=1.9 Score=35.86 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=25.0
Q ss_pred ccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 19 QGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 19 ~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.|+-.....|++.|.++||+|++++...
T Consensus 12 gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 12 GGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred CCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 5889999999999999999999998643
No 72
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=80.88 E-value=4.8 Score=33.49 Aligned_cols=45 Identities=22% Similarity=0.251 Sum_probs=30.8
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEcc
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~ 66 (219)
|=-.-..+|++.|.++||+|++++.......... ...++++..++
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~~~~~~~~~--~~~~i~~~~~~ 60 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRSPYPKQKET--EYNGVRLIHIP 60 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEccCCCCCccc--ccCCceEEEcC
Confidence 4446678999999999999999998653322111 12467777665
No 73
>PLN02846 digalactosyldiacylglycerol synthase
Probab=79.66 E-value=3.3 Score=36.84 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=30.8
Q ss_pred CCceEEEEeCC---Cc-cChhHHHHHHHHHHhCC-CcEEEEeCcc
Q 027763 7 HRAHVLIVPYP---SQ-GHINPTFQFAKRLASKG-LKITLAITNF 46 (219)
Q Consensus 7 ~~~hvvv~p~p---~~-GH~~P~l~La~~L~~rG-~~VT~~t~~~ 46 (219)
+++||++++-. -. |=..-.+.++..|+++| |+|+++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 46899999833 33 66466677788999999 8999998854
No 74
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=79.18 E-value=12 Score=32.49 Aligned_cols=98 Identities=10% Similarity=0.059 Sum_probs=54.1
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCc--EEE--EeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHH
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLK--ITL--AITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQ 85 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~--VT~--~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 85 (219)
.++-+=..+-|.+.-...|+++|.+++++ |.+ .|+.. .+..... ...++....+|-+.+
T Consensus 51 ~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~-~~~~~~~-~~~~~~~~~~P~d~~--------------- 113 (425)
T PRK05749 51 PLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTG-SERAQAL-FGDDVEHRYLPYDLP--------------- 113 (425)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccH-HHHHHHh-cCCCceEEEecCCcH---------------
Confidence 35556667789999999999999997754 332 22222 1111110 012344444442110
Q ss_pred HHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCccc--HHHHHHHcCCCeeEEe
Q 027763 86 NMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYW--ALDVAKGFGLFSAAFF 136 (219)
Q Consensus 86 ~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~~~ 136 (219)
..++.+++.+ +||+|+.-..-.| ....+++.|+|.+...
T Consensus 114 -------~~~~~~l~~~-----~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 114 -------GAVRRFLRFW-----RPKLVIIMETELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred -------HHHHHHHHhh-----CCCEEEEEecchhHHHHHHHHHCCCCEEEEe
Confidence 1234445543 4688774322335 3456788999998764
No 75
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=78.14 E-value=41 Score=29.29 Aligned_cols=107 Identities=5% Similarity=-0.075 Sum_probs=54.4
Q ss_pred ChhHHHHHHHHHHhC--CCcEEEEeCcccccc------cCCC---CCCCCeEEEEcc---CCCCCCCCCCcccHHHHHHH
Q 027763 21 HINPTFQFAKRLASK--GLKITLAITNFIYKT------KKPP---QPSDSVQIDTIS---DGYDDGGFSEAESIDAYLQN 86 (219)
Q Consensus 21 H~~P~l~La~~L~~r--G~~VT~~t~~~~~~~------~~~~---~~~~~i~~~~l~---~~~~~~~~~~~~~~~~~~~~ 86 (219)
==--+...++.|.++ ||+|+++|+...... ..+. ....+++++.+. ..++.+....... ....
T Consensus 16 ~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~ 92 (419)
T cd03806 16 GERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEASTYPRFTL---LGQA 92 (419)
T ss_pred chHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeeccccCCceee---HHHH
Confidence 335677888999887 899999999865432 0000 012345544431 1122211111111 1111
Q ss_pred HHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHH-cCCCeeEEec
Q 027763 87 MEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKG-FGLFSAAFFT 137 (219)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~-lgiP~v~~~~ 137 (219)
+.. +-..++.+.. .+||++|.+...+.+..+++. .++|.+.+.-
T Consensus 93 ~~~-----~~~~~~~~~~--~~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h 137 (419)
T cd03806 93 LGS-----MILGLEALLK--LVPDIFIDTMGYPFTYPLVRLLGGCPVGAYVH 137 (419)
T ss_pred HHH-----HHHHHHHHHh--cCCCEEEEcCCcccHHHHHHHhcCCeEEEEec
Confidence 111 1111222211 247988888877777777765 4678877644
No 76
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=77.33 E-value=4.3 Score=33.40 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=27.0
Q ss_pred CccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 18 SQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 18 ~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
..|+..-...|++.|.++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAGG 43 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCCC
Confidence 4599999999999999999999999886543
No 77
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=76.57 E-value=4.6 Score=33.59 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=30.6
Q ss_pred eEEEEeCC-C-ccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 10 HVLIVPYP-S-QGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 10 hvvv~p~p-~-~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
+|+++... + .|+-.-...+++.|.++||+|++++....
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 56666533 3 58889999999999999999999987653
No 78
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=75.18 E-value=5.7 Score=32.65 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=23.4
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
|--.-...|++.|.++||+|++++...
T Consensus 20 G~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 20 GTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred cHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 555778999999999999999999765
No 79
>PRK08506 replicative DNA helicase; Provisional
Probab=74.77 E-value=19 Score=32.15 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=33.7
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
+++..-|+.|=..-.+++|...+.+|..|.|++.+....
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ 233 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAE 233 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHH
Confidence 566778999999999999999988999999999886543
No 80
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=74.44 E-value=7.1 Score=28.02 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=29.8
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
||++.-..+.+=+. ..++.++|.++|++|+++.++.-.+
T Consensus 2 ~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~ 40 (129)
T PF02441_consen 2 RILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAER 40 (129)
T ss_dssp EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHH
T ss_pred EEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHH
Confidence 56666656554445 9999999999999999999986543
No 81
>PRK00654 glgA glycogen synthase; Provisional
Probab=74.33 E-value=5.5 Score=35.27 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=22.7
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
|.-.-.-.|+++|+++||+|+++++..
T Consensus 18 Gl~~~v~~L~~~L~~~G~~V~v~~p~y 44 (466)
T PRK00654 18 GLGDVVGALPKALAALGHDVRVLLPGY 44 (466)
T ss_pred cHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 444667899999999999999999753
No 82
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=74.13 E-value=7.6 Score=27.11 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=33.1
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
++++...+..-|-.-+.-++..|.++||+|.++-...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 6888999999999999999999999999999885543
No 83
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=74.08 E-value=7 Score=30.27 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEcc
Q 027763 23 NPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (219)
Q Consensus 23 ~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~ 66 (219)
.-.-+|+..|+++||+||+.+.....+.-.. .+.+++.+.+|
T Consensus 21 T~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~--~y~gv~l~~i~ 62 (185)
T PF09314_consen 21 TFVEELAPRLVSKGIDVTVYCRSDYYPYKEF--EYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCCCCc--ccCCeEEEEeC
Confidence 4456788888899999999987655432221 24678888876
No 84
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=73.64 E-value=5.2 Score=30.42 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=24.6
Q ss_pred CccChhHHHHHHHHHHhCCCcEEEEe
Q 027763 18 SQGHINPTFQFAKRLASKGLKITLAI 43 (219)
Q Consensus 18 ~~GH~~P~l~La~~L~~rG~~VT~~t 43 (219)
..|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999998
No 85
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=73.20 E-value=56 Score=27.62 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=65.6
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhC--CCcEEEEeCcccccccCCCCCCCCeEEE-EccCCCCCCCCCCcccHHHH
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKKPPQPSDSVQID-TISDGYDDGGFSEAESIDAY 83 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~r--G~~VT~~t~~~~~~~~~~~~~~~~i~~~-~l~~~~~~~~~~~~~~~~~~ 83 (219)
...+|+++-.-+.|.+.=..++.+.|.++ +.+||+++.+.+.+-++. .+.|+-+ .++. .. . ...
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~---~P~id~vi~~~~--~~-~-----~~~-- 70 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSE---NPEINALYGIKN--KK-A-----GAS-- 70 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhcc---CCCceEEEEecc--cc-c-----cHH--
Confidence 34679999999999999999999999996 899999998876655443 3555432 2221 00 0 000
Q ss_pred HHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeE
Q 027763 84 LQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAA 134 (219)
Q Consensus 84 ~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 134 (219)
..+. .+..+++++.+ .++|++|.=........++...|.+..+
T Consensus 71 -~~~~-----~~~~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 71 -EKIK-----NFFSLIKVLRA--NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred -HHHH-----HHHHHHHHHhh--CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0011 12234455543 4699887433222245667777877644
No 86
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.87 E-value=13 Score=31.83 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=47.1
Q ss_pred cccCCCCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc--cccCCCCCCCCeEEEEccC
Q 027763 2 EEKKIHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY--KTKKPPQPSDSVQIDTISD 67 (219)
Q Consensus 2 ~~~~~~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~--~~~~~~~~~~~i~~~~l~~ 67 (219)
.+...++.|++++-..--||--=|.-=|.-|+..|++|+++.-.... +.+- ++++|+++.++.
T Consensus 6 ~~~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~---~hprI~ih~m~~ 70 (444)
T KOG2941|consen 6 YENKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELL---NHPRIRIHGMPN 70 (444)
T ss_pred cccccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHh---cCCceEEEeCCC
Confidence 34445567888888888899888999999999999999988654332 2222 257899999874
No 87
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=72.44 E-value=7.3 Score=31.56 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=27.1
Q ss_pred CccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 18 SQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 18 ~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
..|+-.-+..+++.|.+.||+|++++.....
T Consensus 11 ~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~ 41 (353)
T cd03811 11 GGGAERVLLNLANGLDKRGYDVTLVVLRDEG 41 (353)
T ss_pred CCCcchhHHHHHHHHHhcCceEEEEEcCCCC
Confidence 5688899999999999999999999886543
No 88
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=71.67 E-value=49 Score=28.71 Aligned_cols=103 Identities=22% Similarity=0.139 Sum_probs=53.1
Q ss_pred cChhHHHHHHHHHHh--CCCcEE---EEeCcccccc-cCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHH-Hhh
Q 027763 20 GHINPTFQFAKRLAS--KGLKIT---LAITNFIYKT-KKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEV-AGL 92 (219)
Q Consensus 20 GH~~P~l~La~~L~~--rG~~VT---~~t~~~~~~~-~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 92 (219)
|-=.--+.++++|.+ +|++|. ++.+..-.++ .-+. -+ .+.. +|..++... .....+....+ ...
T Consensus 8 ged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~---~g-~~~~----~~sgg~~~~-~~~~~~~~~~~gl~~ 78 (396)
T TIGR03492 8 GEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI---IG-PTKE----LPSGGFSYQ-SLRGLLRDLRAGLVG 78 (396)
T ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce---eC-CCCC----CCCCCccCC-CHHHHHHHHHhhHHH
Confidence 333566889999998 699999 8887653321 1110 01 2333 333233221 22222211111 111
Q ss_pred HHH--HHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEE
Q 027763 93 KTL--AELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAF 135 (219)
Q Consensus 93 ~~l--~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~ 135 (219)
... ..+++++. .++|+||.=.-+. ....|...|+|.+++
T Consensus 79 ~~~~~~~~~~~~~---~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~ 119 (396)
T TIGR03492 79 LTLGQWRALRKWA---KKGDLIVAVGDIV-PLLFAWLSGKPYAFV 119 (396)
T ss_pred HHHHHHHHHHHHh---hcCCEEEEECcHH-HHHHHHHcCCCceEE
Confidence 111 23344442 2568777433222 778889999999984
No 89
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=70.11 E-value=9 Score=30.99 Aligned_cols=30 Identities=23% Similarity=0.154 Sum_probs=25.2
Q ss_pred ccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 19 QGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 19 ~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
.|...-+..+++.|.++||+|++++.....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 13 GGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 466677889999999999999999887643
No 90
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=69.81 E-value=10 Score=29.51 Aligned_cols=43 Identities=9% Similarity=-0.081 Sum_probs=37.2
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
.+.+|++.+.++-.|-....-++..|.++|++|+++...-..+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e 125 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPID 125 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHH
Confidence 3568999999999999999999999999999999987665443
No 91
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=69.41 E-value=8.9 Score=31.70 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=26.5
Q ss_pred CccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 18 SQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 18 ~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
.-|.-.-...|++.|.++||+|+++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 43 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPEP 43 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 4488888899999999999999999986543
No 92
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=67.19 E-value=52 Score=24.78 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=29.7
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEE
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLA 42 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~ 42 (219)
-|.++..+|.|=....+.+|-+.+.+|++|.++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 477888899999999999999999999999984
No 93
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=67.05 E-value=5.8 Score=31.70 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=20.9
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
-|+..|.++|..|.++|++|+++....
T Consensus 46 l~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 46 LFFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 467899999999999999999998874
No 94
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=66.74 E-value=22 Score=29.77 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=23.7
Q ss_pred CCccChhHHHHHHHHHHhC-CCcEEEEeCcc
Q 027763 17 PSQGHINPTFQFAKRLASK-GLKITLAITNF 46 (219)
Q Consensus 17 p~~GH~~P~l~La~~L~~r-G~~VT~~t~~~ 46 (219)
..+..+.=+.+|.++|.++ |+++.++.|..
T Consensus 7 gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~ 37 (363)
T cd03786 7 GTRPEYIKLAPLIRALKKDPGFELVLVVTGQ 37 (363)
T ss_pred ecCHHHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 5667777788888999987 89999877754
No 95
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=66.72 E-value=43 Score=25.40 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=20.5
Q ss_pred CCccChhHHHHHHHHH-HhCCCcEEEEeCc
Q 027763 17 PSQGHINPTFQFAKRL-ASKGLKITLAITN 45 (219)
Q Consensus 17 p~~GH~~P~l~La~~L-~~rG~~VT~~t~~ 45 (219)
.+-||+.=|+.|.+.+ .++....+++.+.
T Consensus 6 gsGGHt~eml~L~~~~~~~~~~~~~~ivt~ 35 (170)
T PF08660_consen 6 GSGGHTAEMLRLLKALDNDRYQPRTYIVTE 35 (170)
T ss_pred cCcHHHHHHHHHHHHhhhhcCCCcEEEEEc
Confidence 4569999999999999 4444444544443
No 96
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=66.41 E-value=12 Score=26.55 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=33.7
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
|+++...++-.|-.-..-++..|..+|++|.++.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp 38 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQT 38 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCC
Confidence 58899999999999999999999999999999877543
No 97
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=65.82 E-value=13 Score=29.37 Aligned_cols=42 Identities=7% Similarity=-0.001 Sum_probs=36.7
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
.+.+|++.+.++-.|-+...=++..|.++|++|+++...-..
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~ 128 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPI 128 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCH
Confidence 457899999999999999999999999999999998765433
No 98
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.77 E-value=44 Score=28.24 Aligned_cols=105 Identities=17% Similarity=0.169 Sum_probs=62.9
Q ss_pred CccChhHHHHHHHHHHhCCCcEEEEeCcccc-cccCCCCCCCCeEEEEccCCCCCCCCCCcccHH-HHHHHHHHHhhHHH
Q 027763 18 SQGHINPTFQFAKRLASKGLKITLAITNFIY-KTKKPPQPSDSVQIDTISDGYDDGGFSEAESID-AYLQNMEVAGLKTL 95 (219)
Q Consensus 18 ~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~-~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 95 (219)
-.-|+.-+-++-+.|..+||+|-+.+-.... ..+-+ .-++.+..+... + ...+. .+.....+. -.+
T Consensus 9 n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd---~ygf~~~~Igk~----g---~~tl~~Kl~~~~eR~--~~L 76 (346)
T COG1817 9 NPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLD---LYGFPYKSIGKH----G---GVTLKEKLLESAERV--YKL 76 (346)
T ss_pred CcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHH---HhCCCeEeeccc----C---CccHHHHHHHHHHHH--HHH
Confidence 3457777889999999999998775544321 11111 124555554310 1 11222 222222221 234
Q ss_pred HHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhh
Q 027763 96 AELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTC 140 (219)
Q Consensus 96 ~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a 140 (219)
.+++.+ .++|+.+. ...+.+..+|--+|+|.+.|.-..-
T Consensus 77 ~ki~~~-----~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 77 SKIIAE-----FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred HHHHhh-----cCCceEee-cCCcchhhHHhhcCCceEEecCChh
Confidence 555554 35788888 6677899999999999999976543
No 99
>PLN02316 synthase/transferase
Probab=65.70 E-value=8.1 Score=37.84 Aligned_cols=40 Identities=8% Similarity=0.320 Sum_probs=29.6
Q ss_pred CCceEEEEe---CC--CccCh-hHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 7 HRAHVLIVP---YP--SQGHI-NPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 7 ~~~hvvv~p---~p--~~GH~-~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+++||+++. .| -.|-+ .-...|+++|+++||+|.++++..
T Consensus 586 ~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y 631 (1036)
T PLN02316 586 PPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY 631 (1036)
T ss_pred CCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 457888776 22 12444 445799999999999999999964
No 100
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=65.40 E-value=12 Score=27.72 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=33.6
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeC
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~ 44 (219)
++++|++.+...-||=.=.--+++.|++.|++|.....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 67899999988779999999999999999999986544
No 101
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=64.00 E-value=12 Score=33.01 Aligned_cols=27 Identities=19% Similarity=0.317 Sum_probs=22.2
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
|=-.-+-.|+++|+++||+|.++++..
T Consensus 18 Gl~~~v~~L~~aL~~~G~~v~v~~p~y 44 (473)
T TIGR02095 18 GLADVVGALPKALAALGHDVRVLLPAY 44 (473)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecCC
Confidence 333556899999999999999999754
No 102
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=63.44 E-value=16 Score=23.82 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=27.5
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEE
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLA 42 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~ 42 (219)
-+|++......|..=+.++|+.|+++|+.|...
T Consensus 17 ~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 17 AVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 466666677799999999999999999887654
No 103
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=63.44 E-value=11 Score=32.27 Aligned_cols=35 Identities=14% Similarity=-0.042 Sum_probs=24.3
Q ss_pred CCccEEE-eCC--CcccHHHHHHHc--CCCeeEEechhhH
Q 027763 107 NPIDCVV-YDA--FLYWALDVAKGF--GLFSAAFFTQTCA 141 (219)
Q Consensus 107 ~~~d~vI-~D~--~~~~~~~vA~~l--giP~v~~~~~~a~ 141 (219)
.+||++| .|+ |......-+++. |||.+.|.+-..+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~PqvW 114 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQVW 114 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccce
Confidence 3578877 686 455566677788 7999887665544
No 104
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=62.90 E-value=8 Score=29.89 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=17.1
Q ss_pred HHHHHHHHhCCCcEEEEeCcc
Q 027763 26 FQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~~ 46 (219)
..||+.+..||++||+++.+.
T Consensus 33 ~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 33 AALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp HHHHHHHHHTT-EEEEEE-TT
T ss_pred HHHHHHHHHCCCEEEEEecCc
Confidence 578999999999999999985
No 105
>PRK06321 replicative DNA helicase; Provisional
Probab=62.85 E-value=54 Score=29.35 Aligned_cols=39 Identities=10% Similarity=0.252 Sum_probs=32.5
Q ss_pred EEEEeCCCccChhHHHHHHHHHHh-CCCcEEEEeCccccc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLAS-KGLKITLAITNFIYK 49 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~-rG~~VT~~t~~~~~~ 49 (219)
+++-.-|+.|=..-.+++|+..+. .|..|-|++.+-...
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ 268 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVD 268 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHH
Confidence 566778999999999999999985 589999998876543
No 106
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=62.41 E-value=58 Score=27.50 Aligned_cols=110 Identities=12% Similarity=0.003 Sum_probs=57.6
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhC-CCcEEEEeCcccccccCCCCCCCCeEE-EEccCCCCCCCCCCcccHHHHHHHH
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASK-GLKITLAITNFIYKTKKPPQPSDSVQI-DTISDGYDDGGFSEAESIDAYLQNM 87 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~r-G~~VT~~t~~~~~~~~~~~~~~~~i~~-~~l~~~~~~~~~~~~~~~~~~~~~~ 87 (219)
+|+++. ..+.++.=+.++.++|.++ ++++.++.|.............-+|.. +.+. +. + . ..+.... .
T Consensus 2 ~i~~~~-gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~~~~~~--~~--~-~-~~~~~~~---~ 71 (365)
T TIGR00236 2 KVSIVL-GTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPPDYDLN--IM--S-P-GQTLGEI---T 71 (365)
T ss_pred eEEEEE-ecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCCCeeee--cC--C-C-CCCHHHH---H
Confidence 455444 6778999999999999986 677777766543211110000001110 0011 10 0 0 1122111 1
Q ss_pred HHHhhHHHHHHHHHhhcCCCCccEEEe--CCCccc-HHHHHHHcCCCeeEE
Q 027763 88 EVAGLKTLAELITKYKSSSNPIDCVVY--DAFLYW-ALDVAKGFGLFSAAF 135 (219)
Q Consensus 88 ~~~~~~~l~~~l~~l~~~~~~~d~vI~--D~~~~~-~~~vA~~lgiP~v~~ 135 (219)
.. +...+.+++++ .+||+|++ |..... +..+|..+|||.+..
T Consensus 72 ~~-~~~~l~~~l~~-----~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 72 SN-MLEGLEELLLE-----EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HH-HHHHHHHHHHH-----cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 11 11245555554 24798875 555433 678889999999854
No 107
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=62.38 E-value=7.5 Score=34.22 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 23 NPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 23 ~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.-.-.|+++|+++||+|+++++..
T Consensus 20 ~~~~~L~~aL~~~G~~V~Vi~p~y 43 (476)
T cd03791 20 DVVGALPKALAKLGHDVRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCC
Confidence 456789999999999999999753
No 108
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=62.23 E-value=9.3 Score=31.64 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhcCCCCccEEEeCCCccc-----HHHHHHHcCCCeeEEechh
Q 027763 93 KTLAELITKYKSSSNPIDCVVYDAFLYW-----ALDVAKGFGLFSAAFFTQT 139 (219)
Q Consensus 93 ~~l~~~l~~l~~~~~~~d~vI~D~~~~~-----~~~vA~~lgiP~v~~~~~~ 139 (219)
.+++++++++.++.+++-+||.|.|.-- ..+.|.+.+||+|++--..
T Consensus 133 p~IKE~vR~~I~~A~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~~ 184 (284)
T PF07894_consen 133 PHIKEVVRRMIQQAQKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDEQ 184 (284)
T ss_pred CCHHHHHHHHHHHhcceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEechh
Confidence 4567777665433356789999998732 4577889999999886543
No 109
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=61.78 E-value=70 Score=24.45 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=41.0
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEcc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTIS 66 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~ 66 (219)
...+|.+---||.|-..-.+.++..|.++|++|-=+.++....--. .-+++++.+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGk----R~GF~Ivdl~ 59 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGK----RIGFKIVDLA 59 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCe----EeeeEEEEcc
Confidence 3568999999999999999999999999999997444443221111 1257777665
No 110
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=61.06 E-value=12 Score=29.05 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=22.6
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+|.++.. .|+.- -.+.++...|||+||-++-..
T Consensus 2 KIaiIgA--sG~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 2 KIAIIGA--SGKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred eEEEEec--CchhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 4666653 34332 367899999999999877543
No 111
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=60.74 E-value=7.2 Score=31.45 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 23 NPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 23 ~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.-.-.|+++|+++||+|+++++..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 556789999999999999999863
No 112
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=60.06 E-value=9 Score=31.17 Aligned_cols=44 Identities=11% Similarity=0.263 Sum_probs=37.2
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccC
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKK 52 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~ 52 (219)
..++++--||.|=..=...++.+|..+|+.|+|++++.....++
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 46888888998888888999999998899999999987665544
No 113
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=59.09 E-value=12 Score=33.03 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=24.9
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEE
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKIT 40 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT 40 (219)
|+.-|..+.|-..-.+.|.++|++||++|-
T Consensus 4 vIAg~~SG~GKTTvT~glm~aL~~rg~~Vq 33 (451)
T COG1797 4 VIAGTSSGSGKTTVTLGLMRALRRRGLKVQ 33 (451)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHhcCCccc
Confidence 334456677999999999999999999875
No 114
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=58.19 E-value=18 Score=28.27 Aligned_cols=38 Identities=8% Similarity=0.072 Sum_probs=28.7
Q ss_pred eEEEEeCCCccChhH-HHHHHHHHHhCCCcEEEEeCcccc
Q 027763 10 HVLIVPYPSQGHINP-TFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 10 hvvv~p~p~~GH~~P-~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
+|++-- .|.+...- ...|+++|.++|++|+++.|+...
T Consensus 7 ~IllgV-TGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~ 45 (196)
T PRK08305 7 RIGFGL-TGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQ 45 (196)
T ss_pred EEEEEE-cCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHH
Confidence 555444 44555555 699999999999999999988644
No 115
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=58.07 E-value=44 Score=27.18 Aligned_cols=50 Identities=16% Similarity=0.053 Sum_probs=35.1
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCccc--HHHHHHHcCCCeeEEechhhHHHHH
Q 027763 94 TLAELITKYKSSSNPIDCVVYDAFLYW--ALDVAKGFGLFSAAFFTQTCAVNFI 145 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~~~~~~a~~~~~ 145 (219)
.+.++++.+.+ .++.||+++....- +..+|++.|++.+.+.+.+...+.+
T Consensus 205 ~l~~l~~~ik~--~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~ 256 (266)
T cd01018 205 DLKRLIDLAKE--KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEEN 256 (266)
T ss_pred HHHHHHHHHHH--cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHH
Confidence 45566665543 35889999987654 5699999999998887765443333
No 116
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=57.41 E-value=24 Score=27.54 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=33.5
Q ss_pred HHHHHHHHhhcC--CCCccEEEeCCCcccHHHHHHHcCCCeeEEechh
Q 027763 94 TLAELITKYKSS--SNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQT 139 (219)
Q Consensus 94 ~l~~~l~~l~~~--~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~ 139 (219)
.|+.+++++... ...+.+||+|----.+..-|++.|||.+++..-.
T Consensus 13 Nlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~ 60 (200)
T COG0299 13 NLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKE 60 (200)
T ss_pred cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEecccc
Confidence 455666655421 1247899999977778999999999998886543
No 117
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=56.17 E-value=26 Score=26.58 Aligned_cols=113 Identities=14% Similarity=0.221 Sum_probs=57.7
Q ss_pred cChhHHHHHHHHH-HhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCC----------CCC-C------CCCC-cccH
Q 027763 20 GHINPTFQFAKRL-ASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDG----------YDD-G------GFSE-AESI 80 (219)
Q Consensus 20 GH~~P~l~La~~L-~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~----------~~~-~------~~~~-~~~~ 80 (219)
|.+.=.+..+++| .+.|.+|-+-... +...++.. .++.++.++-. ... + ++.. ..+.
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~---~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~ 92 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKH---VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGL 92 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC----SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHh---CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHH
Confidence 6777788899999 7889998765543 33333332 13444444310 000 0 0000 1122
Q ss_pred HHHHHHHHH-------HhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEechhhH
Q 027763 81 DAYLQNMEV-------AGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQTCA 141 (219)
Q Consensus 81 ~~~~~~~~~-------~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~a~ 141 (219)
..+...+.- .....++..++++..+ .+|+||-+.. +...|+++|+|.+.+.++--+
T Consensus 93 ~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~--G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 93 ESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE--GVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT--T--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHhCCceEEEEECCHHHHHHHHHHHHHc--CCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 222222211 0245677777777653 4899999875 579999999999988775433
No 118
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=55.60 E-value=13 Score=29.08 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeCcccccc
Q 027763 24 PTFQFAKRLASKGLKITLAITNFIYKT 50 (219)
Q Consensus 24 P~l~La~~L~~rG~~VT~~t~~~~~~~ 50 (219)
=+..|++.|.+.||+|+++.+..+.+.
T Consensus 15 Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 15 GIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp HHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 367899999778899999999887654
No 119
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=53.45 E-value=60 Score=30.04 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCCccEEE-eCC--CcccHHHHHHHcCC--CeeEEechhhH
Q 027763 94 TLAELITKYKSSSNPIDCVV-YDA--FLYWALDVAKGFGL--FSAAFFTQTCA 141 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI-~D~--~~~~~~~vA~~lgi--P~v~~~~~~a~ 141 (219)
.++++.+.+.+ .+||++| .|+ |......-+++.|+ |.+.+.+-..+
T Consensus 298 ~~~~l~~~i~~--~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVW 348 (608)
T PRK01021 298 RYRKLYKTILK--TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIW 348 (608)
T ss_pred HHHHHHHHHHh--cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccce
Confidence 34444555543 4678887 686 44446678889996 98777655443
No 120
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=53.40 E-value=23 Score=28.79 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=27.3
Q ss_pred CccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 18 SQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 18 ~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
..|+-.-+..+++.|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 4688889999999999999999999987644
No 121
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=52.56 E-value=30 Score=28.44 Aligned_cols=26 Identities=8% Similarity=-0.038 Sum_probs=22.0
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 21 HINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 21 H~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
--.-+..+++.|.++||+|++++...
T Consensus 13 ~~~~~~~~~~~L~~~g~~v~v~~~~~ 38 (355)
T cd03799 13 SETFILREILALEAAGHEVEIFSLRP 38 (355)
T ss_pred chHHHHHHHHHHHhCCCeEEEEEecC
Confidence 34568899999999999999998754
No 122
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=52.53 E-value=35 Score=24.35 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=23.5
Q ss_pred eEEEEeCCCcc---ChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 10 HVLIVPYPSQG---HINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 10 hvvv~p~p~~G---H~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
+|+++-=|-.+ .-.-...|+++..+|||+|.+++....
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 34444444332 234577899999999999999988754
No 123
>PRK07773 replicative DNA helicase; Validated
Probab=50.85 E-value=77 Score=30.85 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=33.1
Q ss_pred EEEEeCCCccChhHHHHHHHHHHh-CCCcEEEEeCcccccc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLAS-KGLKITLAITNFIYKT 50 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~-rG~~VT~~t~~~~~~~ 50 (219)
+++..-|+.|=..-.+++|...+. +|..|.|++.+.....
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q 260 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ 260 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 666778999999999999999986 4889999998765543
No 124
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=50.83 E-value=23 Score=27.42 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=27.7
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
||++--..+.|=+.-...+.++|.+.|++|+++.|+.-
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A 39 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETV 39 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhH
Confidence 45555444545555556999999999999999888764
No 125
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.61 E-value=40 Score=22.76 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=25.7
Q ss_pred CccEEE--eCCCc---cc-HHHHHHHcCCCeeEEechhhHHH
Q 027763 108 PIDCVV--YDAFL---YW-ALDVAKGFGLFSAAFFTQTCAVN 143 (219)
Q Consensus 108 ~~d~vI--~D~~~---~~-~~~vA~~lgiP~v~~~~~~a~~~ 143 (219)
+.|+|| +|+.. .| +...|++.|+|.+..-..+...+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 357764 77755 34 46999999999999876665443
No 126
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.48 E-value=30 Score=25.16 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=27.5
Q ss_pred EEEEeCCCc-cChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 11 VLIVPYPSQ-GHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 11 vvv~p~p~~-GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
+|++-.|-. -.+.-.+-++.+|-.+|++||+..++...
T Consensus 6 lv~lGCPeiP~qissaiYls~klkkkgf~v~VaateAa~ 44 (148)
T COG4081 6 LVSLGCPEIPPQISSAIYLSHKLKKKGFDVTVAATEAAL 44 (148)
T ss_pred EEEecCCCCCccchHHHHHHHHhhccCccEEEecCHhhh
Confidence 444555544 33445678899999999999999988643
No 127
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=50.45 E-value=25 Score=22.60 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhCCCcEEEEeCccc
Q 027763 24 PTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 24 P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
.-+++|..|+++|.+||++.....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccch
Confidence 457899999999999999887653
No 128
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=48.81 E-value=20 Score=29.64 Aligned_cols=31 Identities=10% Similarity=0.142 Sum_probs=26.4
Q ss_pred CCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 17 PSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 17 p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
..-|.-.-+..+++.|.++||+|++++....
T Consensus 10 ~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~ 40 (358)
T cd03812 10 NRGGIETFIMNYYRNLDRSKIQFDFLVTSKE 40 (358)
T ss_pred CCccHHHHHHHHHHhcCccceEEEEEEeCCC
Confidence 3458888899999999999999999997653
No 129
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=48.06 E-value=34 Score=28.33 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=41.8
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhC--CCcEEEEeCcccccccCCCCCCCCeE-EEEc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKKPPQPSDSVQ-IDTI 65 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~r--G~~VT~~t~~~~~~~~~~~~~~~~i~-~~~l 65 (219)
+|+++-..+.|.+.-...+.+.|.++ +.+||+++.+.+.+-++. .+.|+ ++.+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~---~p~vd~v~~~ 56 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRL---HPAVDEVIPV 56 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhc---CCCccEEEEe
Confidence 47888888999999999999999996 899999999877655543 34564 4443
No 130
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=47.96 E-value=61 Score=25.10 Aligned_cols=32 Identities=22% Similarity=0.139 Sum_probs=23.5
Q ss_pred CCccEEE-eCCCcc-cHHHHHHHcCCCeeEEech
Q 027763 107 NPIDCVV-YDAFLY-WALDVAKGFGLFSAAFFTQ 138 (219)
Q Consensus 107 ~~~d~vI-~D~~~~-~~~~vA~~lgiP~v~~~~~ 138 (219)
..||+|| .|.... .+..=|.++|||.+.+.-+
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dt 159 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDT 159 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecC
Confidence 3578775 776553 4678899999999998543
No 131
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=47.79 E-value=29 Score=26.67 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=29.2
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
||++.-..+.|=+ -...+.+.|.++|++|.++.|+...+
T Consensus 3 ~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~ 41 (182)
T PRK07313 3 NILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATK 41 (182)
T ss_pred EEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHH
Confidence 5665555554444 48999999999999999999886543
No 132
>PRK09620 hypothetical protein; Provisional
Probab=47.23 E-value=21 Score=28.59 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=18.2
Q ss_pred HHHHHHHHhCCCcEEEEeCcc
Q 027763 26 FQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+||+.|..+|++|+++....
T Consensus 33 s~LA~~L~~~Ga~V~li~g~~ 53 (229)
T PRK09620 33 RIIAEELISKGAHVIYLHGYF 53 (229)
T ss_pred HHHHHHHHHCCCeEEEEeCCC
Confidence 688999999999999997653
No 133
>PLN02891 IMP cyclohydrolase
Probab=46.98 E-value=19 Score=32.58 Aligned_cols=45 Identities=13% Similarity=0.179 Sum_probs=31.6
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccC--CCCC
Q 027763 21 HINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISD--GYDD 71 (219)
Q Consensus 21 H~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~--~~~~ 71 (219)
.-.=+.+||+.|.+.| |.+++|....+.++. .+|.+..+.+ ++|+
T Consensus 31 DKtgi~~fAk~L~~~g--veIiSTgGTak~L~e----~Gi~v~~Vsd~TgfPE 77 (547)
T PLN02891 31 DKTDLALLANGLQELG--YTIVSTGGTASALEA----AGVSVTKVEELTNFPE 77 (547)
T ss_pred cccCHHHHHHHHHHCC--CEEEEcchHHHHHHH----cCCceeeHHhccCCch
Confidence 3344789999999998 557888877766654 3677777654 5555
No 134
>PRK13604 luxD acyl transferase; Provisional
Probab=46.61 E-value=55 Score=27.55 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=25.1
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEE
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLA 42 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~ 42 (219)
..+++.....++-.-+..+|+.|+++|+.|.-+
T Consensus 38 ~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 38 NTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 455565555567666999999999999887654
No 135
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=46.58 E-value=30 Score=26.56 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=28.8
Q ss_pred eEEEEeCCCccCh-hHHHHHHHHHHhCCCcEEEEe
Q 027763 10 HVLIVPYPSQGHI-NPTFQFAKRLASKGLKITLAI 43 (219)
Q Consensus 10 hvvv~p~p~~GH~-~P~l~La~~L~~rG~~VT~~t 43 (219)
-+++.|+|++=|+ -|.-+++..|.+.|.++..+.
T Consensus 35 V~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lv 69 (194)
T TIGR03264 35 VVAVAMSPGRRHITKPVCEITYALREAGIQTSVLV 69 (194)
T ss_pred EEEEecCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 3678889999999 899999999999998865543
No 136
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=46.33 E-value=25 Score=22.09 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCcEEEEeCcc
Q 027763 26 FQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~~ 46 (219)
+..|..|+++|++|+++=...
T Consensus 9 l~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHCCCcEEEEecCc
Confidence 567889999999999986543
No 137
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=46.12 E-value=37 Score=30.43 Aligned_cols=39 Identities=31% Similarity=0.419 Sum_probs=31.3
Q ss_pred ceEEEEeCCCccChhHH------------HHHHHHHHhCCCcEEEEeCccc
Q 027763 9 AHVLIVPYPSQGHINPT------------FQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~------------l~La~~L~~rG~~VT~~t~~~~ 47 (219)
.+|++-.-|..--+.|. ..||+++..+|++||+++.+..
T Consensus 257 kkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~ 307 (475)
T PRK13982 257 RRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD 307 (475)
T ss_pred CEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC
Confidence 47887777777777776 4789999999999999997653
No 138
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=45.29 E-value=35 Score=29.50 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCCCCccEEE-eCC--CcccHHHHHHHcCCC--eeEEec
Q 027763 95 LAELITKYKSSSNPIDCVV-YDA--FLYWALDVAKGFGLF--SAAFFT 137 (219)
Q Consensus 95 l~~~l~~l~~~~~~~d~vI-~D~--~~~~~~~vA~~lgiP--~v~~~~ 137 (219)
++++.+.+.+ .+||++| .|+ |......-+++.|++ .+.|.+
T Consensus 71 ~~~~~~~~~~--~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~ 116 (373)
T PF02684_consen 71 FRKLVERIKE--EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYIS 116 (373)
T ss_pred HHHHHHHHHH--cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEEC
Confidence 3444444433 4678776 886 445567788899998 554443
No 139
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=44.37 E-value=34 Score=26.89 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCe
Q 027763 93 KTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFS 132 (219)
Q Consensus 93 ~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~ 132 (219)
+..++++..|.+.+.. -.+|+..|-..+..||.+||||.
T Consensus 91 ~Gi~eLv~~L~~~~~~-v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQ-VYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCHHHHHHHHHHcCCe-EEEEcCChHHHHHHHHHHhCCcH
Confidence 4566777777654433 36778888888999999999998
No 140
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=43.92 E-value=25 Score=28.01 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=17.2
Q ss_pred HHHHHHHHhCCCcEEEEeCc
Q 027763 26 FQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~ 45 (219)
.+||++|+++|++|+++...
T Consensus 30 ~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHhCCCEEEEEECc
Confidence 57899999999999998744
No 141
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=43.42 E-value=38 Score=28.22 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=27.1
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+++|+++-..+.| .-+|..|++.||+||++.-..
T Consensus 4 ~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 34689998766666 446788999999999997654
No 142
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.02 E-value=47 Score=26.98 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=22.8
Q ss_pred ccEE-EeCCCccc-HHHHHHHcCCCeeEEech
Q 027763 109 IDCV-VYDAFLYW-ALDVAKGFGLFSAAFFTQ 138 (219)
Q Consensus 109 ~d~v-I~D~~~~~-~~~vA~~lgiP~v~~~~~ 138 (219)
||++ |.|.-.-- |..=|+++|||++.+.-+
T Consensus 157 Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDT 188 (252)
T COG0052 157 PDVLFVIDPRKEKIAVKEANKLGIPVVALVDT 188 (252)
T ss_pred CCEEEEeCCcHhHHHHHHHHHcCCCEEEEecC
Confidence 6766 58887643 678899999999988543
No 143
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=42.67 E-value=19 Score=26.74 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCcEEEEeCcc
Q 027763 26 FQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~~ 46 (219)
..+|..|+++||+|++.+...
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 378999999999999999874
No 144
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=42.58 E-value=61 Score=27.27 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=35.2
Q ss_pred Cce-EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 8 RAH-VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 8 ~~h-vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
++| |-+--.||-|--.-.-.|.++|.++||+|-++......+
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 444 567779999999999999999999999999988765443
No 145
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=42.45 E-value=30 Score=31.15 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccC--CCCC
Q 027763 23 NPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISD--GYDD 71 (219)
Q Consensus 23 ~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~--~~~~ 71 (219)
.=+..|++.|.+.|++| +.|....+.++. .+|.+..+.+ ++|+
T Consensus 11 ~~iv~lAk~L~~lGfeI--iATgGTak~L~e----~GI~v~~Vsk~TgfPE 55 (511)
T TIGR00355 11 TGIVEFAQGLVERGVEL--LSTGGTAKLLAE----AGVPVTEVSDYTGFPE 55 (511)
T ss_pred ccHHHHHHHHHHCCCEE--EEechHHHHHHH----CCCeEEEeecccCCch
Confidence 33678999999999887 466665655554 3566655542 4554
No 146
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=42.28 E-value=41 Score=27.31 Aligned_cols=31 Identities=10% Similarity=-0.003 Sum_probs=26.5
Q ss_pred CCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 16 YPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 16 ~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+..-|+-..+..|++.|.+.||+|.+++...
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~ 39 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHVVISLTD 39 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEEEEecCc
Confidence 3445899999999999999999999988754
No 147
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=41.69 E-value=57 Score=21.33 Aligned_cols=34 Identities=18% Similarity=0.266 Sum_probs=26.5
Q ss_pred eEEEEeCCCc--cChhHHHHHHHHHHhCCCcEEEEe
Q 027763 10 HVLIVPYPSQ--GHINPTFQFAKRLASKGLKITLAI 43 (219)
Q Consensus 10 hvvv~p~p~~--GH~~P~l~La~~L~~rG~~VT~~t 43 (219)
.|+++|.... .+..-...++..|.+.|..|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 6888986653 466678889999999999998744
No 148
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=41.52 E-value=34 Score=27.33 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=28.9
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeC
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~ 44 (219)
|++--+|+.|-..-.-+||+.|.+++++|..++.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 5566699999999999999999999998766543
No 149
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=41.24 E-value=74 Score=22.34 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=32.7
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
||++..-++.|=......+++.|+++|.+|-++.+..
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4777888899999999999999999999999888765
No 150
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=41.13 E-value=36 Score=26.18 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=24.1
Q ss_pred CCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 17 PSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 17 p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
.+.|-+-- .+|.++|.++|++|.++.|+.-..
T Consensus 8 Gsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~ 39 (181)
T TIGR00421 8 GASGVIYG-IRLLEVLKEAGVEVHLVISDWAKE 39 (181)
T ss_pred CHHHHHHH-HHHHHHHHHCCCEEEEEECccHHH
Confidence 34444433 789999999999999999986543
No 151
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=40.84 E-value=4.2 Score=22.14 Aligned_cols=22 Identities=32% Similarity=0.735 Sum_probs=14.5
Q ss_pred eCCCccChhHHHHHHHHHHhCC
Q 027763 15 PYPSQGHINPTFQFAKRLASKG 36 (219)
Q Consensus 15 p~p~~GH~~P~l~La~~L~~rG 36 (219)
.||+||-+||-.++---|-+.|
T Consensus 17 TFPGqGP~NPKir~Pyplpn~g 38 (39)
T PF08026_consen 17 TFPGQGPFNPKIRWPYPLPNPG 38 (39)
T ss_pred cCCCCCCCCccccccccCCCCC
Confidence 4789999998766544444443
No 152
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=40.68 E-value=27 Score=30.23 Aligned_cols=34 Identities=18% Similarity=0.392 Sum_probs=24.7
Q ss_pred EEEeCC-C--ccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 12 LIVPYP-S--QGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 12 vv~p~p-~--~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+=|.. . -||+.|++.+ +.|.+.||++.++....
T Consensus 36 G~dPTg~~lHlGh~v~l~~l-~~lq~~G~~~~iligd~ 72 (377)
T TIGR00234 36 GFDPTAPSLHLGHLVPLLKL-RDFQQAGHEVIVLLGDA 72 (377)
T ss_pred eeCCCCCCccHHHHHHHHHH-HHHHHCCCcEEEEEecc
Confidence 444544 2 2999997765 68888999999887653
No 153
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=40.62 E-value=46 Score=27.28 Aligned_cols=29 Identities=14% Similarity=0.200 Sum_probs=24.4
Q ss_pred ccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 19 QGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 19 ~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
.|--.-...|++.|+++||+|++++....
T Consensus 13 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 13 CGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 36667889999999999999999887643
No 154
>PTZ00445 p36-lilke protein; Provisional
Probab=40.61 E-value=34 Score=27.17 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.8
Q ss_pred cChhH-HHHHHHHHHhCCCcEEEEeCccc
Q 027763 20 GHINP-TFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 20 GH~~P-~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
+|..| +..+.++|.+.|..|+++|-...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 56777 88999999999999999997653
No 155
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=40.36 E-value=60 Score=22.50 Aligned_cols=35 Identities=17% Similarity=0.008 Sum_probs=30.2
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
++....++..|-.-..-++..|.++|++|.++...
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~ 36 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVD 36 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCC
Confidence 56667788899999999999999999999988654
No 156
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=40.31 E-value=56 Score=22.74 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=27.0
Q ss_pred CCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 17 PSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 17 p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
...|+-..+.+.++.+.++|..|..+|.....
T Consensus 61 s~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 61 SYSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp ESSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred eccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 36789999999999999999999888876544
No 157
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=40.23 E-value=61 Score=25.24 Aligned_cols=99 Identities=14% Similarity=0.175 Sum_probs=58.5
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc------cccCCCCCCCCeEEEEccCCCCCCCCCCcccHH
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY------KTKKPPQPSDSVQIDTISDGYDDGGFSEAESID 81 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~------~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 81 (219)
+..|.++...|.|=....+.+|-+.+.+|++|.++---... ..++. .+++++.....++.- .. .+..
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~---l~~v~~~~~g~~~~~---~~-~~~~ 94 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEF---GGGVEFHVMGTGFTW---ET-QDRE 94 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhc---CCCcEEEECCCCCcc---cC-CCcH
Confidence 45699999999999999999999999999999876532211 11121 246777776543211 11 1111
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcc
Q 027763 82 AYLQNMEVAGLKTLAELITKYKSSSNPIDCVVYDAFLY 119 (219)
Q Consensus 82 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~ 119 (219)
.-... +...++...+.+.. ..+|+||.|-.+.
T Consensus 95 e~~~~----~~~~~~~a~~~l~~--~~ydlvVLDEi~~ 126 (191)
T PRK05986 95 RDIAA----AREGWEEAKRMLAD--ESYDLVVLDELTY 126 (191)
T ss_pred HHHHH----HHHHHHHHHHHHhC--CCCCEEEEehhhH
Confidence 11111 12233333333322 4699999998653
No 158
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=40.17 E-value=38 Score=25.92 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=28.2
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
+|++.- .|.+...-...|.+.|.++|++|.++.|+.-.+
T Consensus 2 ~I~lgv-tGs~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~ 40 (177)
T TIGR02113 2 KILLAV-TGSIAAYKAADLTSQLTKLGYDVTVLMTQAATQ 40 (177)
T ss_pred EEEEEE-cCHHHHHHHHHHHHHHHHCCCEEEEEEChHHHh
Confidence 344443 344556666799999999999999999886443
No 159
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=39.94 E-value=78 Score=22.11 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=22.8
Q ss_pred EEeCCCccChhHHHHHHHHHHhCCCcEEEE
Q 027763 13 IVPYPSQGHINPTFQFAKRLASKGLKITLA 42 (219)
Q Consensus 13 v~p~p~~GH~~P~l~La~~L~~rG~~VT~~ 42 (219)
++-....|.-.-+..+++.|+++|+.|..+
T Consensus 3 v~~HG~~~~~~~~~~~~~~l~~~G~~v~~~ 32 (145)
T PF12695_consen 3 VLLHGWGGSRRDYQPLAEALAEQGYAVVAF 32 (145)
T ss_dssp EEECTTTTTTHHHHHHHHHHHHTTEEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 333344556777999999999999887776
No 160
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.68 E-value=34 Score=29.89 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=27.1
Q ss_pred eEEEEeCC-C--ccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIVPYP-S--QGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~p~p-~--~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+.+=|.. . -||+.|++.| +.|.+.||+|+++....
T Consensus 36 Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd~ 74 (401)
T COG0162 36 YIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGDA 74 (401)
T ss_pred EEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEeccc
Confidence 35555544 2 2999999886 56888999999988764
No 161
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=39.64 E-value=47 Score=21.58 Aligned_cols=30 Identities=13% Similarity=0.005 Sum_probs=20.5
Q ss_pred CccEEEeCCCc--ccHHHHHHHcCCCeeEEec
Q 027763 108 PIDCVVYDAFL--YWALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 108 ~~d~vI~D~~~--~~~~~vA~~lgiP~v~~~~ 137 (219)
++.-||++.-. .-+..+|+++|||.++-..
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 35667766544 3478999999999987543
No 162
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.22 E-value=36 Score=24.31 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeCc
Q 027763 24 PTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 24 P~l~La~~L~~rG~~VT~~t~~ 45 (219)
-.+..|++|+++|++|+..-..
T Consensus 24 ~~~~VA~~L~e~g~dv~atDI~ 45 (129)
T COG1255 24 FFLDVAKRLAERGFDVLATDIN 45 (129)
T ss_pred hHHHHHHHHHHcCCcEEEEecc
Confidence 3688999999999998775544
No 163
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=39.01 E-value=28 Score=26.87 Aligned_cols=42 Identities=17% Similarity=0.076 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCccc--HHHHHHHcCCCeeEEechh
Q 027763 94 TLAELITKYKSSSNPIDCVVYDAFLYW--ALDVAKGFGLFSAAFFTQT 139 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~~~~~~ 139 (219)
.++.+++.. .+..-+|.|+|++. +..+|.++|-.++.+=...
T Consensus 180 l~~~lI~~~----t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~ 223 (231)
T PF01555_consen 180 LIERLIKAS----TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDE 223 (231)
T ss_dssp HHHHHHHHH----S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSH
T ss_pred HHHHHHHhh----hccceeeehhhhccChHHHHHHHcCCeEEEEeCCH
Confidence 344555543 23467899999976 4788999999888775443
No 164
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.90 E-value=66 Score=28.42 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=27.8
Q ss_pred CCceEEEEeCCCc--cChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 7 HRAHVLIVPYPSQ--GHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 7 ~~~hvvv~p~p~~--GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
.+++|++++-|+- |--+- .||+|+..||.++++...
T Consensus 265 ~~P~V~Ilcgpgnnggdg~v---~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 265 QWPLVAILCGPGNNGGDGLV---CGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCceEEEEeCCCCccchhHH---HHHHHHHcCceeEEEeec
Confidence 3568999998875 33322 899999999999987765
No 165
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=38.69 E-value=39 Score=23.24 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 23 NPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 23 ~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
.|.+.+++.|.++|.+|.+.=+....
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~ 42 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDE 42 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHH
T ss_pred CHHHHHHHHHHHCCCEEEEECCccCh
Confidence 68999999999999999887665433
No 166
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=38.62 E-value=78 Score=25.49 Aligned_cols=42 Identities=24% Similarity=0.170 Sum_probs=36.8
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKT 50 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~ 50 (219)
.-+++.-.|+.|..+-.++++...+++|..|-++++......
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEE 65 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHH
Confidence 347788899999999999999999999999999999865543
No 167
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=38.16 E-value=2.2e+02 Score=23.94 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhcCCCCccEEEeCCCcc--cHHHHHHHcCCCeeEEechhhHHH
Q 027763 93 KTLAELITKYKSSSNPIDCVVYDAFLY--WALDVAKGFGLFSAAFFTQTCAVN 143 (219)
Q Consensus 93 ~~l~~~l~~l~~~~~~~d~vI~D~~~~--~~~~vA~~lgiP~v~~~~~~a~~~ 143 (219)
+.-++.++++.+. .+|.+||++.+.. +...+|++.++|.+...-.+....
T Consensus 69 e~~~~~~~~~~~~-~~P~iIvt~~~~~p~~l~~~a~~~~ip~l~t~~~~~~~~ 120 (304)
T TIGR00679 69 EEQKQIIHNLLTL-NPPAIILSKSFTDPTVLLQVNETYQVPILKTDLFSTELS 120 (304)
T ss_pred HHHHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHhCCcEEEeCCcHHHHH
Confidence 3445566666543 4566777877664 467999999999987665544433
No 168
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=38.07 E-value=26 Score=25.65 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeCccccccc
Q 027763 24 PTFQFAKRLASKGLKITLAITNFIYKTK 51 (219)
Q Consensus 24 P~l~La~~L~~rG~~VT~~t~~~~~~~~ 51 (219)
-.+-|+..|.++||+|++..++...+.+
T Consensus 15 ~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 15 SALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 3678899999999999999998755433
No 169
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=37.86 E-value=1.4e+02 Score=25.53 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=58.5
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhC-CCcEEEEeCccccc-ccCCCC---CCCCeEEEEccCCCCCCCCC--CcccHHH
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASK-GLKITLAITNFIYK-TKKPPQ---PSDSVQIDTISDGYDDGGFS--EAESIDA 82 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~r-G~~VT~~t~~~~~~-~~~~~~---~~~~i~~~~l~~~~~~~~~~--~~~~~~~ 82 (219)
+|+++ +..+.-+.=|.++.++|.++ ++++.++.|....+ ...... ...++... ++ ..- ... ...+...
T Consensus 2 ki~~v-~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~g~~~~~~~~~~~~~~--~~-~~~-~~~~~~~~~~~~ 76 (365)
T TIGR03568 2 KICVV-TGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEYGNTVNEIEKDGFDID--EK-IEI-LLDSDSNAGMAK 76 (365)
T ss_pred eEEEE-EecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhhccHHHHHHHcCCCCC--Cc-ccc-ccCCCCCCCHHH
Confidence 34433 36777888899999999984 78988877664322 110000 00011111 11 000 011 1112222
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcCCCCccEEE--eCCCccc-HHHHHHHcCCCeeEEec
Q 027763 83 YLQNMEVAGLKTLAELITKYKSSSNPIDCVV--YDAFLYW-ALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~~~~~~d~vI--~D~~~~~-~~~vA~~lgiP~v~~~~ 137 (219)
. +.. +...+.+++++. +||+|| -|.+..- +..+|..+|||.+-+..
T Consensus 77 ~---~~~-~~~~~~~~~~~~-----~Pd~vlv~GD~~~~la~alaA~~~~IPv~Hvea 125 (365)
T TIGR03568 77 S---MGL-TIIGFSDAFERL-----KPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHG 125 (365)
T ss_pred H---HHH-HHHHHHHHHHHh-----CCCEEEEeCCchHHHHHHHHHHHhCCcEEEEEC
Confidence 1 111 122455566542 468777 4555544 57889999999995543
No 170
>PLN02939 transferase, transferring glycosyl groups
Probab=37.46 E-value=81 Score=30.96 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=30.7
Q ss_pred CCceEEEEe-----CCCccCh-hHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 7 HRAHVLIVP-----YPSQGHI-NPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 7 ~~~hvvv~p-----~p~~GH~-~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+.+||+++. +.-.|-+ .-.-.|.++|+++||+|.++++..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 457888775 3334544 567789999999999999999954
No 171
>PRK05920 aromatic acid decarboxylase; Validated
Probab=37.43 E-value=45 Score=26.22 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=29.2
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
.+|++-- .|.....=...+.++|.+.|++|+++.|....
T Consensus 4 krIllgI-TGsiaa~ka~~lvr~L~~~g~~V~vi~T~~A~ 42 (204)
T PRK05920 4 KRIVLAI-TGASGAIYGVRLLECLLAADYEVHLVISKAAQ 42 (204)
T ss_pred CEEEEEE-eCHHHHHHHHHHHHHHHHCCCEEEEEEChhHH
Confidence 3555443 34455567889999999999999999987644
No 172
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=37.29 E-value=1.4e+02 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=16.8
Q ss_pred ChhHHHHHHHHHHh-CC--CcEEEEeCc
Q 027763 21 HINPTFQFAKRLAS-KG--LKITLAITN 45 (219)
Q Consensus 21 H~~P~l~La~~L~~-rG--~~VT~~t~~ 45 (219)
|......|+++|.+ +| .+|.++-..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~D~~ 28 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVVDFL 28 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEehH
Confidence 67777889999987 55 455544443
No 173
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=37.11 E-value=35 Score=24.49 Aligned_cols=43 Identities=16% Similarity=0.038 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCc--ccHHHHHHHcCCCeeEEec
Q 027763 94 TLAELITKYKSSSNPIDCVVYDAFL--YWALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI~D~~~--~~~~~vA~~lgiP~v~~~~ 137 (219)
..++.++++.+. .+|.+||++.+. .+...+|++.|+|.....-
T Consensus 69 ~r~~~l~~l~~~-~~P~iIvt~~~~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 69 ERKERLEKLFSY-NPPCIIVTRGLEPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HHCCHHHHHCTT-T-S-EEEETTT---HHHHHHHHHCT--EEEESS
T ss_pred HHHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHhCCcEEEcCC
Confidence 344556666543 467788888876 3568999999999977644
No 174
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=36.76 E-value=39 Score=25.46 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=24.9
Q ss_pred CCceEEEEeCCCccCh-hHHHHHHHHHHhCCCcEEEEeC
Q 027763 7 HRAHVLIVPYPSQGHI-NPTFQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~-~P~l~La~~L~~rG~~VT~~t~ 44 (219)
+..+|+++.-++ += -=-+.+||.|+++|++|+++..
T Consensus 24 ~~~~v~il~G~G--nNGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 24 KGPRVLILCGPG--NNGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp TT-EEEEEE-SS--HHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCeEEEEECCC--CChHHHHHHHHHHHHCCCeEEEEEE
Confidence 456788888554 22 2257789999999999998443
No 175
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=36.43 E-value=81 Score=24.83 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCC--CCccEEEeCCCcccHHHHHHHcCCCeeEEec
Q 027763 94 TLAELITKYKSSS--NPIDCVVYDAFLYWALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 94 ~l~~~l~~l~~~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~ 137 (219)
.++.+++.+.+.. ..+.+||+|--.-.+...|+++|||...+..
T Consensus 12 n~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 12 NFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred hHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 4556666654321 2366888886444568999999999987644
No 176
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=36.41 E-value=32 Score=29.46 Aligned_cols=32 Identities=25% Similarity=0.532 Sum_probs=26.6
Q ss_pred EeCCCc-cChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 14 VPYPSQ-GHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 14 ~p~p~~-GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+|+|.. |.-+=+.++++.|+++ |+||+++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 566665 9999999999999776 8999998754
No 177
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=36.31 E-value=79 Score=25.36 Aligned_cols=43 Identities=28% Similarity=0.290 Sum_probs=28.8
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCccc--HHHHHHHcCCCeeEEech
Q 027763 94 TLAELITKYKSSSNPIDCVVYDAFLYW--ALDVAKGFGLFSAAFFTQ 138 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~~~~~ 138 (219)
.+.++.+.+.+ .++.||+++....- +..+|++.|+|.+.+.+.
T Consensus 187 ~l~~l~~~ik~--~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 187 DLAELIKLIKE--NKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHHH--TT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHHhhh--cCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 45555555544 35789999876654 468899999999888766
No 178
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=35.79 E-value=55 Score=23.45 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=36.2
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
+..+-+.|..|.+.+.|.-++.+.|.+.-.++.++|+...
T Consensus 46 ~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqpD 85 (144)
T PF10657_consen 46 KLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQPD 85 (144)
T ss_pred ceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCCC
Confidence 5678899999999999999999999998899999998754
No 179
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=35.31 E-value=57 Score=27.50 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=40.6
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhC--CCcEEEEeCcccccccCCCCCCCCeEE
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKKPPQPSDSVQI 62 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~r--G~~VT~~t~~~~~~~~~~~~~~~~i~~ 62 (219)
+|+++-..+.|.+.=...+.+.|.++ +.+|++++.+.+.+-++. .+.|+-
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~---~P~vd~ 53 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSR---MPEVNE 53 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhc---CCccCE
Confidence 68999999999999999999999994 899999998876655443 345554
No 180
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=35.23 E-value=27 Score=22.42 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCCcEEEEeCcc
Q 027763 25 TFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 25 ~l~La~~L~~rG~~VT~~t~~~ 46 (219)
--+|+..|..+|+.||=.|-..
T Consensus 22 Q~eL~~~L~~~Gi~vTQaTiSR 43 (70)
T PF01316_consen 22 QEELVELLEEEGIEVTQATISR 43 (70)
T ss_dssp HHHHHHHHHHTT-T--HHHHHH
T ss_pred HHHHHHHHHHcCCCcchhHHHH
Confidence 4579999999999988666543
No 181
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=35.15 E-value=93 Score=19.79 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=26.9
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEe
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t 43 (219)
+++...+|.|=..-...|++.|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 345555677888889999999999999998776
No 182
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=35.11 E-value=94 Score=27.29 Aligned_cols=40 Identities=15% Similarity=0.199 Sum_probs=33.8
Q ss_pred CCceEEEEe-CCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 7 HRAHVLIVP-YPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 7 ~~~hvvv~p-~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
..+-|+++| ..+.||-.=+++|+.++.++|+++.+++...
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 446788888 5566888889999999999999999998876
No 183
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=35.07 E-value=61 Score=25.16 Aligned_cols=43 Identities=28% Similarity=0.400 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccC--CCCC
Q 027763 23 NPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISD--GYDD 71 (219)
Q Consensus 23 ~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~--~~~~ 71 (219)
.=+..||+.|.+.|+++ +.|....+.++. .+|....+.+ ++|+
T Consensus 11 ~~l~~lAk~L~~lGf~I--~AT~GTAk~L~e----~GI~v~~V~k~TgfpE 55 (187)
T cd01421 11 TGLVEFAKELVELGVEI--LSTGGTAKFLKE----AGIPVTDVSDITGFPE 55 (187)
T ss_pred ccHHHHHHHHHHCCCEE--EEccHHHHHHHH----cCCeEEEhhhccCCcH
Confidence 34778999999999887 466655555553 3566655542 4554
No 184
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=34.43 E-value=30 Score=24.26 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=22.8
Q ss_pred eCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 15 PYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 15 p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
-+||+|+++=-.+|++++.+.| |+|+.+.
T Consensus 78 i~pGyg~lse~~~fa~~~~~~g--i~fiGp~ 106 (110)
T PF00289_consen 78 IHPGYGFLSENAEFAEACEDAG--IIFIGPS 106 (110)
T ss_dssp EESTSSTTTTHHHHHHHHHHTT---EESSS-
T ss_pred cccccchhHHHHHHHHHHHHCC--CEEECcC
Confidence 4679999999999999999877 6676554
No 185
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=34.27 E-value=1.1e+02 Score=22.51 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=23.5
Q ss_pred CCCccChhHHHHHHHHHHhCCCcEEEE
Q 027763 16 YPSQGHINPTFQFAKRLASKGLKITLA 42 (219)
Q Consensus 16 ~p~~GH~~P~l~La~~L~~rG~~VT~~ 42 (219)
-++.|-..-.+.|++.|+++|.+|-++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 356688888999999999999999886
No 186
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.10 E-value=1.2e+02 Score=27.62 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEEech
Q 027763 92 LKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAFFTQ 138 (219)
Q Consensus 92 ~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~ 138 (219)
....+..++++.++ .+++||-|.. +...|+++|++.+...+.
T Consensus 131 ~~e~~~~~~~l~~~--G~~~viG~~~---~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 131 EEDARSCVNDLRAR--GIGAVVGAGL---ITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHHHC--CCCEEECChH---HHHHHHHcCCceEEEecH
Confidence 34566777777653 5899999985 579999999999988764
No 187
>PRK04940 hypothetical protein; Provisional
Probab=34.09 E-value=1.2e+02 Score=23.36 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=25.6
Q ss_pred cEEE-eCCCcccHHHHHHHcCCCeeEEechhhHHH
Q 027763 110 DCVV-YDAFLYWALDVAKGFGLFSAAFFTQTCAVN 143 (219)
Q Consensus 110 d~vI-~D~~~~~~~~vA~~lgiP~v~~~~~~a~~~ 143 (219)
.+|| +-.-.+||.-+|+++|+|.|.+.|+---..
T Consensus 62 ~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P~~ 96 (180)
T PRK04940 62 PLICGVGLGGYWAERIGFLCGIRQVIFNPNLFPEE 96 (180)
T ss_pred cEEEEeChHHHHHHHHHHHHCCCEEEECCCCChHH
Confidence 4666 344447899999999999999988754433
No 188
>PRK06849 hypothetical protein; Provisional
Probab=34.05 E-value=93 Score=26.73 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=26.3
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+.+|++.- |-....++++|.|.++||+|.++....
T Consensus 4 ~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITG----ARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34677664 333358999999999999999987764
No 189
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=33.86 E-value=77 Score=27.78 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=19.8
Q ss_pred CccEEEeCCCcccHHHHHHHcCCCeeEEe
Q 027763 108 PIDCVVYDAFLYWALDVAKGFGLFSAAFF 136 (219)
Q Consensus 108 ~~d~vI~D~~~~~~~~vA~~lgiP~v~~~ 136 (219)
+||++|.+. +...+|+++|+|.+.+.
T Consensus 370 ~pdliig~~---~~~~~a~~~gip~~~~~ 395 (430)
T cd01981 370 EPELIFGTQ---MERHIGKRLDIPCAVIS 395 (430)
T ss_pred CCCEEEecc---hhhHHHHHcCCCEEEEe
Confidence 578888877 45667899999987763
No 190
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=33.71 E-value=87 Score=21.70 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=28.6
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCC-cEEEEeCc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGL-KITLAITN 45 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~-~VT~~t~~ 45 (219)
.++.++.+.+....|.....++++++.+++. ++.++...
T Consensus 49 ~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG 88 (119)
T cd02067 49 EDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGG 88 (119)
T ss_pred cCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence 4567777777777888888888888888776 66655544
No 191
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=33.65 E-value=42 Score=24.97 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEc
Q 027763 26 FQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTI 65 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l 65 (219)
..++++|.++||+|+.++-.... ... .++++++..
T Consensus 12 ~~l~~~L~~~~~~V~~~~R~~~~--~~~---~~~~~~~~~ 46 (183)
T PF13460_consen 12 RALAKQLLRRGHEVTALVRSPSK--AED---SPGVEIIQG 46 (183)
T ss_dssp HHHHHHHHHTTSEEEEEESSGGG--HHH---CTTEEEEES
T ss_pred HHHHHHHHHCCCEEEEEecCchh--ccc---cccccccee
Confidence 46899999999999998865432 111 145676653
No 192
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=33.54 E-value=43 Score=27.53 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=23.4
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
+-++++-.+.| --.++|+.|++||++|.++.=.
T Consensus 7 ~~~lITGASsG---IG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 7 KTALITGASSG---IGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCEEEEEeCc
Confidence 34455544443 3478999999999999987654
No 193
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=33.27 E-value=27 Score=23.94 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=11.0
Q ss_pred cCCCCeEEEcChh
Q 027763 200 ADRADLVLVNTFY 212 (219)
Q Consensus 200 ~~~~~~vlvNtf~ 212 (219)
..+||-+++|||-
T Consensus 34 ~e~AD~iiiNTC~ 46 (98)
T PF00919_consen 34 PEEADVIIINTCT 46 (98)
T ss_pred cccCCEEEEEcCC
Confidence 3579999999995
No 194
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.23 E-value=71 Score=23.10 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=31.7
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCC-cEEEEeC
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGL-KITLAIT 44 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~-~VT~~t~ 44 (219)
..++++.++....+|.--+-.++++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4678899998888999999999999999886 5666665
No 195
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=33.03 E-value=89 Score=24.23 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=31.4
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
++++-..|-|=..-...||..+..+|.+|.+++...+.
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 56677788899999999999999999999999987654
No 196
>TIGR03274 methan_mark_7 putative methanogenesis marker protein 7. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=32.79 E-value=58 Score=26.86 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=28.9
Q ss_pred eEEEEeCCCccCh-hHHHHHHHHHHhCCCcEEEEe
Q 027763 10 HVLIVPYPSQGHI-NPTFQFAKRLASKGLKITLAI 43 (219)
Q Consensus 10 hvvv~p~p~~GH~-~P~l~La~~L~~rG~~VT~~t 43 (219)
-+++.|+|+.-|+ .|..+++..|.+.|.++..+.
T Consensus 72 V~vVamSpgrrHlpkpvCdIt~~LR~~G~~tn~l~ 106 (302)
T TIGR03274 72 IAVVSPSLARHHLPHAACDIAEYLRRYGAKTNMIG 106 (302)
T ss_pred EEEEecCcccccCCCcHHHHHHHHHhcCCccceEE
Confidence 3678889999999 899999999999998866543
No 197
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=32.75 E-value=1.1e+02 Score=25.07 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=24.9
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCccc--HHHHHHHcCCCeeEEec
Q 027763 94 TLAELITKYKSSSNPIDCVVYDAFLYW--ALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~~~~ 137 (219)
.+.++++.+.+ .++.||+++....- +..+|++.|++.+.+.+
T Consensus 208 ~l~~l~~~ik~--~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~ 251 (282)
T cd01017 208 QLAELVEFVKK--SDVKYIFFEENASSKIAETLAKETGAKLLVLNP 251 (282)
T ss_pred HHHHHHHHHHH--cCCCEEEEeCCCChHHHHHHHHHcCCcEEEecc
Confidence 34444444433 34677777766543 45777778877766544
No 198
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=32.67 E-value=3.1e+02 Score=24.79 Aligned_cols=44 Identities=7% Similarity=-0.045 Sum_probs=29.4
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCc-----ccHHHHHHHcCCCeeEEec
Q 027763 94 TLAELITKYKSSSNPIDCVVYDAFL-----YWALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI~D~~~-----~~~~~vA~~lgiP~v~~~~ 137 (219)
.++..++.+.+.+.+++.|+...-. .|.+..|.-+|+|+...-.
T Consensus 421 ~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~ 469 (536)
T TIGR01234 421 GTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS 469 (536)
T ss_pred HHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC
Confidence 4555566554333346666655433 6899999999999977653
No 199
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=32.67 E-value=73 Score=27.07 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=24.1
Q ss_pred CccEEE-eCCCcc-cHHHHHHHcCCCeeEEechh
Q 027763 108 PIDCVV-YDAFLY-WALDVAKGFGLFSAAFFTQT 139 (219)
Q Consensus 108 ~~d~vI-~D~~~~-~~~~vA~~lgiP~v~~~~~~ 139 (219)
.||+|| .|.-.. .+..=|.++|||.+.+.-+.
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 467665 787663 47788999999999986443
No 200
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=32.45 E-value=74 Score=25.61 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 16 YPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 16 ~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
=+|-|=..-.+-||..|+++|-.|+++=+..|..
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 3566999999999999999999999999988764
No 201
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=32.44 E-value=43 Score=26.62 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=18.3
Q ss_pred HHHHHHHHhCCCcEEEEeCcc
Q 027763 26 FQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~~ 46 (219)
..+|+.|.++||+|+.+-...
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCH
Confidence 678999999999999887654
No 202
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=32.28 E-value=2.9e+02 Score=22.89 Aligned_cols=100 Identities=9% Similarity=0.020 Sum_probs=61.1
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhC--CCcEEEEeCcccccccCCCCCCCCeEEE-EccCCCCCCCCCCcccHHHHHHH
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKKPPQPSDSVQID-TISDGYDDGGFSEAESIDAYLQN 86 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~r--G~~VT~~t~~~~~~~~~~~~~~~~i~~~-~l~~~~~~~~~~~~~~~~~~~~~ 86 (219)
+|+++-..+.|.+.=...+.+.|.++ +.+||+++.+.+.+-++. .+.|+-+ .++. .. + ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~---~p~id~v~~~~~--~~-~---~~~~------ 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLER---MPEIRQAIDMPL--GH-G---ALEL------ 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhc---CchhceeeecCC--cc-c---chhh------
Confidence 47888888999999999999999985 899999998766544443 2444432 2221 01 0 0011
Q ss_pred HHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCe
Q 027763 87 MEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFS 132 (219)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~ 132 (219)
. ...++.+++.+ .++|++|.=........++...|+|.
T Consensus 66 -~-----~~~~~~~~lr~--~~yD~vi~l~~~~~s~ll~~~~~~~~ 103 (334)
T TIGR02195 66 -T-----ERRRLGRSLRE--ERYDQAIVLPNSLKSALIPFFAGIPH 103 (334)
T ss_pred -h-----HHHHHHHHHhh--cCCCEEEECCCCHHHHHHHHHcCCCc
Confidence 0 11233344432 46898876444344566676767765
No 203
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=32.17 E-value=45 Score=24.10 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCcEEEEeCcc
Q 027763 27 QFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 27 ~La~~L~~rG~~VT~~t~~~ 46 (219)
-+|..|++.|++|++++...
T Consensus 12 ~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 12 LYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp HHHHHHHHTTCEEEEEESHH
T ss_pred HHHHHHHHCCCceEEEEccc
Confidence 47889999999999999887
No 204
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=32.09 E-value=1.3e+02 Score=23.31 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCC--CccEEEeCCCcccHHHHHHHcCCCeeEEec
Q 027763 94 TLAELITKYKSSSN--PIDCVVYDAFLYWALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 94 ~l~~~l~~l~~~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~ 137 (219)
.++.+++.+.+... .+.+||+|---.-+...|+++|||.+.+.+
T Consensus 13 ~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~ 58 (190)
T TIGR00639 13 NLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSL 58 (190)
T ss_pred hHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECc
Confidence 34555555543221 356777886433457889999999987653
No 205
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.93 E-value=2.8e+02 Score=22.56 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCcc---cHHHHHHHcCCCeeEE
Q 027763 92 LKTLAELITKYKSSSNPIDCVVYDAFLY---WALDVAKGFGLFSAAF 135 (219)
Q Consensus 92 ~~~l~~~l~~l~~~~~~~d~vI~D~~~~---~~~~vA~~lgiP~v~~ 135 (219)
...++.+++.+.+ -++.+.|.-.. -+..+|++.|||++.=
T Consensus 137 ~~aM~~~m~~Lk~----r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 137 EDAMEKLMEALKE----RGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred HHHHHHHHHHHHH----CCeEEEcccccccchhhhhHhhcCCceeee
Confidence 4566777777753 35777776553 3579999999999864
No 206
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=31.79 E-value=63 Score=24.72 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=25.6
Q ss_pred CCccChhH-HHHHHHHHHh-CCCcEEEEeCcccc
Q 027763 17 PSQGHINP-TFQFAKRLAS-KGLKITLAITNFIY 48 (219)
Q Consensus 17 p~~GH~~P-~l~La~~L~~-rG~~VT~~t~~~~~ 48 (219)
-|.||... ..++.+.|.+ +|++|.++.|+.-.
T Consensus 7 tGsg~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~ 40 (174)
T TIGR02699 7 TGSGDKLPETYSIMKDVKNRYGDEIDVFLSKAGE 40 (174)
T ss_pred EccHHHHHHHHHHHHHHHHhcCCEEEEEECHhHH
Confidence 34588866 8899999985 69999999987644
No 207
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=31.71 E-value=65 Score=25.74 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=27.5
Q ss_pred EeCCCccCh-hHHHHHHHHHHhC--CCcEEEEeCccccc
Q 027763 14 VPYPSQGHI-NPTFQFAKRLASK--GLKITLAITNFIYK 49 (219)
Q Consensus 14 ~p~p~~GH~-~P~l~La~~L~~r--G~~VT~~t~~~~~~ 49 (219)
+...|.|+. .=..+|.+.|.++ |++|.++.|+.-.+
T Consensus 4 ~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~ 42 (234)
T TIGR02700 4 WGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEE 42 (234)
T ss_pred EEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHh
Confidence 333455666 5789999999999 99999999876443
No 208
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=31.47 E-value=1.1e+02 Score=22.64 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=32.3
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
+++.-.||.|=......++..|+++|.+|.++.....
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 4566788999999999999999999999999987754
No 209
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=31.36 E-value=94 Score=23.05 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=29.2
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
+.++-+.+.|=..-+..|++.|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 45666778898888999999999999999988654
No 210
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=31.09 E-value=1.3e+02 Score=24.65 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=29.8
Q ss_pred CCCceEEEEeCCCccChhH-HHHHHHHHHhCCCcEEEEeCcccccc
Q 027763 6 IHRAHVLIVPYPSQGHINP-TFQFAKRLASKGLKITLAITNFIYKT 50 (219)
Q Consensus 6 ~~~~hvvv~p~p~~GH~~P-~l~La~~L~~rG~~VT~~t~~~~~~~ 50 (219)
.+++||++.. --|--.| +..|++.|.+.| +|+++.+....+.
T Consensus 3 ~~~M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 3 DKKPHILVCN--DDGIEGEGIHVLAASMKKIG-RVTVVAPAEPHSG 45 (257)
T ss_pred CCCCEEEEEC--CCCCCCHHHHHHHHHHHhCC-CEEEEcCCCCCCC
Confidence 3567888876 3343334 778889998888 7999988876543
No 211
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=31.05 E-value=1.1e+02 Score=27.09 Aligned_cols=39 Identities=21% Similarity=0.386 Sum_probs=34.2
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
.|+++..+|.|=..-...||+.|.++|++|.+++.....
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 477788899999999999999999999999999887543
No 212
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=30.81 E-value=3.3e+02 Score=22.96 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=35.7
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCC
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGY 69 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~ 69 (219)
.++++ ..-.|...-++..++.+.++|..|..+|......+... ..+...+.+|.+.
T Consensus 80 dlvI~-iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~~~L~~~a~---~~~~~~i~ip~~~ 135 (337)
T PRK08674 80 TLVIA-VSYSGNTEETLSAVEQALKRGAKIIAITSGGKLKEMAK---EHGLPVIIVPGGY 135 (337)
T ss_pred cEEEE-EcCCCCCHHHHHHHHHHHHCCCeEEEECCCchHHHHHH---hcCCeEEEeCCCC
Confidence 34444 34568888899999999999998888876432222211 1245666666544
No 213
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=30.80 E-value=1.8e+02 Score=22.54 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=26.3
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
|+++..++.-|--=+...+++|.+.|.+|.++.-..
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~ 146 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGE 146 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 667777767666556788888888888887776543
No 214
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=30.71 E-value=55 Score=28.33 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=25.4
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
+--|++|.....|+-+-...+|..||++|+=|..+-..
T Consensus 99 ~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHr 136 (379)
T PF03403_consen 99 KFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHR 136 (379)
T ss_dssp -EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---
T ss_pred CCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccC
Confidence 34589999888899999999999999999877665443
No 215
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=30.65 E-value=1.2e+02 Score=24.88 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=32.8
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
-++++..+|.|=..-...||..|+.+|.+|.++....+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 35667788889999999999999999999999998753
No 216
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.60 E-value=1.1e+02 Score=19.59 Aligned_cols=33 Identities=21% Similarity=0.613 Sum_probs=26.2
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEe
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t 43 (219)
+|++++. ..++..-.+.+++.|.+.|.+|.+-.
T Consensus 3 ~v~ii~~-~~~~~~~a~~~~~~Lr~~g~~v~~d~ 35 (91)
T cd00860 3 QVVVIPV-TDEHLDYAKEVAKKLSDAGIRVEVDL 35 (91)
T ss_pred EEEEEee-CchHHHHHHHHHHHHHHCCCEEEEEC
Confidence 5666764 56778889999999999999988744
No 217
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=30.53 E-value=47 Score=26.33 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=21.8
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEe
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t 43 (219)
=+++|.-|.||= +..|+++||+|+=+=
T Consensus 40 rvLvPgCG~g~D------~~~La~~G~~VvGvD 66 (218)
T PF05724_consen 40 RVLVPGCGKGYD------MLWLAEQGHDVVGVD 66 (218)
T ss_dssp EEEETTTTTSCH------HHHHHHTTEEEEEEE
T ss_pred eEEEeCCCChHH------HHHHHHCCCeEEEEe
Confidence 466799999986 567889999998653
No 218
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=30.50 E-value=49 Score=27.50 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=17.8
Q ss_pred HHHHHHHHhCCCcEEEEeCcc
Q 027763 26 FQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+|..+|...||+||+++-..
T Consensus 12 ~~L~~~L~~~gh~v~iltR~~ 32 (297)
T COG1090 12 RALTARLRKGGHQVTILTRRP 32 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcCC
Confidence 478888999999999998654
No 219
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=30.27 E-value=89 Score=24.72 Aligned_cols=39 Identities=21% Similarity=0.395 Sum_probs=29.9
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
.+.+|.+=..||-|-..-|++=|++|.++|.+|.+-..+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 456788888999999999999999999999999875443
No 220
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=30.24 E-value=1.3e+02 Score=23.06 Aligned_cols=30 Identities=23% Similarity=0.076 Sum_probs=20.9
Q ss_pred CCccEEEeCCCccc-------HHHHHHHcCCCeeEEec
Q 027763 107 NPIDCVVYDAFLYW-------ALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 107 ~~~d~vI~D~~~~~-------~~~vA~~lgiP~v~~~~ 137 (219)
++| +||...-..+ ...+|+++|+|.+.-..
T Consensus 35 KrP-lIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 35 KRP-LLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CCc-EEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 345 6666654444 57899999999986654
No 221
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=30.09 E-value=69 Score=26.18 Aligned_cols=30 Identities=27% Similarity=0.318 Sum_probs=21.9
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeC
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~ 44 (219)
+|.++-..+.| ..+|..|++.||+||++..
T Consensus 2 ~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred EEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 45555443333 5678899999999999986
No 222
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=30.05 E-value=77 Score=25.67 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=36.4
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhC--CCcEEEEeCcccccccC
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKK 52 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~r--G~~VT~~t~~~~~~~~~ 52 (219)
+|+++-..+.|.+.-+..+.+.|.++ +.+||+++.+.+...++
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~ 45 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLE 45 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHh
Confidence 47888888999999999999999996 48999999987665444
No 223
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=29.95 E-value=49 Score=27.80 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCcEEEEeC
Q 027763 26 FQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~ 44 (219)
-..|++||+||++|.++.-
T Consensus 63 KayA~eLAkrG~nvvLIsR 81 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISR 81 (312)
T ss_pred HHHHHHHHHcCCEEEEEeC
Confidence 5789999999999877764
No 224
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=29.71 E-value=1e+02 Score=23.73 Aligned_cols=99 Identities=18% Similarity=0.276 Sum_probs=44.2
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhC--CCcEEEEeCcccccc-cCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHH
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKT-KKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQN 86 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~r--G~~VT~~t~~~~~~~-~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 86 (219)
.++-+=..+.|=++-..+|+++|.++ |+.|.+-++...-.. ..+. -.+.+....+|-+.+
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~-~~~~v~~~~~P~D~~---------------- 84 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKL-LPDRVDVQYLPLDFP---------------- 84 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG--GGG-SEEE---SSH----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHh-CCCCeEEEEeCccCH----------------
Confidence 45555567789999999999999986 788776555322211 1110 001233333442111
Q ss_pred HHHHhhHHHHHHHHHhhcCCCCccEEE-eCCCccc--HHHHHHHcCCCeeEEec
Q 027763 87 MEVAGLKTLAELITKYKSSSNPIDCVV-YDAFLYW--ALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~~~~d~vI-~D~~~~~--~~~vA~~lgiP~v~~~~ 137 (219)
...+.+++.+ + ||++| .+. -.| ....|++.|||.+....
T Consensus 85 ------~~~~rfl~~~----~-P~~~i~~Et-ElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 85 ------WAVRRFLDHW----R-PDLLIWVET-ELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp ------HHHHHHHHHH-------SEEEEES-----HHHHHH-----S-EEEEEE
T ss_pred ------HHHHHHHHHh----C-CCEEEEEcc-ccCHHHHHHHhhcCCCEEEEee
Confidence 1233445554 2 35444 554 445 35778899999998854
No 225
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=29.54 E-value=46 Score=27.04 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=17.0
Q ss_pred HHHHHHHhCCCcEEEEeCcc
Q 027763 27 QFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 27 ~La~~L~~rG~~VT~~t~~~ 46 (219)
-+|..|++.||+||++.-..
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~ 24 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGE 24 (293)
T ss_pred HHHHHHHhCCCcEEEEecHH
Confidence 47889999999999998763
No 226
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=29.50 E-value=1.2e+02 Score=23.66 Aligned_cols=35 Identities=29% Similarity=0.297 Sum_probs=31.9
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
+.+.-.|+.|-..-.++++...+.+|..|.|++++
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56777889999999999999999999999999998
No 227
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=29.49 E-value=66 Score=29.12 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccC--CCCC
Q 027763 22 INPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISD--GYDD 71 (219)
Q Consensus 22 ~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~--~~~~ 71 (219)
-.=+..|++.|.+.|+++ +.|....+.++. .+|.+..+.+ ++|+
T Consensus 14 K~~iv~lAk~L~~lGfeI--~AT~GTak~L~e----~GI~v~~V~k~TgfpE 59 (513)
T PRK00881 14 KTGIVEFAKALVELGVEI--LSTGGTAKLLAE----AGIPVTEVSDVTGFPE 59 (513)
T ss_pred cccHHHHHHHHHHCCCEE--EEcchHHHHHHH----CCCeeEEeecccCCch
Confidence 344789999999999887 466665655554 3566555542 4554
No 228
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=29.49 E-value=70 Score=25.68 Aligned_cols=26 Identities=15% Similarity=0.301 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 22 INPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 22 ~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
+-+++.+.+.|.++|+.|.++|....
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 35689999999999999999998753
No 229
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=29.33 E-value=53 Score=26.15 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCCCcEEEEe
Q 027763 25 TFQFAKRLASKGLKITLAI 43 (219)
Q Consensus 25 ~l~La~~L~~rG~~VT~~t 43 (219)
-..+|++|+++|++|+++.
T Consensus 28 G~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 28 GKIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHHCCCEEEEEc
Confidence 3678999999999999875
No 230
>PRK14098 glycogen synthase; Provisional
Probab=29.26 E-value=53 Score=29.41 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=29.0
Q ss_pred CCceEEEEe-----CCCc-cChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 7 HRAHVLIVP-----YPSQ-GHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 7 ~~~hvvv~p-----~p~~-GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
+.++|+++. +.=. |=-.-+-.|.++|+++||+|.++.+.
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 446787765 3222 33467788999999999999999984
No 231
>KOG2848 consensus 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]
Probab=29.18 E-value=99 Score=25.36 Aligned_cols=91 Identities=21% Similarity=0.265 Sum_probs=48.0
Q ss_pred CCCceEEEEeCCCc---cChhHHHHHHHHHHhC-CCcE---EEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcc
Q 027763 6 IHRAHVLIVPYPSQ---GHINPTFQFAKRLASK-GLKI---TLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAE 78 (219)
Q Consensus 6 ~~~~hvvv~p~p~~---GH~~P~l~La~~L~~r-G~~V---T~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 78 (219)
.++.+|-++|=..+ |-+.|+-.=|=.||.+ +.-| ++-+.......-...-+..++.+..+|+ +|.+|. +.+
T Consensus 161 k~~~kvWvFPEGTRn~~g~llPFKKGAF~lAvqaqVPIVPvv~ssy~~f~~~~~k~f~sG~v~V~vL~p-I~Tegl-T~d 238 (276)
T KOG2848|consen 161 KENRKVWVFPEGTRNKEGRLLPFKKGAFHLAVQAQVPIVPVVFSSYGDFYSTKEKVFNSGNVIVRVLPP-IPTEGL-TKD 238 (276)
T ss_pred hCCeeEEEccCCccCCCCcccccccceeeeehhcCCCEEEEEEecccccccCccceeecceEEEEEcCC-CCccCC-Ccc
Confidence 34567888887766 6677777777778765 4443 3333332221111111124566666653 444333 245
Q ss_pred cHHHHHHHHHHHhhHHHHHH
Q 027763 79 SIDAYLQNMEVAGLKTLAEL 98 (219)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~~~ 98 (219)
|+..+.+..+..+.+.++++
T Consensus 239 dv~~L~~~~R~~M~~~~~ei 258 (276)
T KOG2848|consen 239 DVDVLSDECRSAMLETFKEI 258 (276)
T ss_pred cHHHHHHHHHHHHHHHHHHh
Confidence 56666666655555555544
No 232
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=29.02 E-value=74 Score=26.43 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=37.2
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhC--CCcEEEEeCcccccccC
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKK 52 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~r--G~~VT~~t~~~~~~~~~ 52 (219)
||+++-..+.|.+.-...+.+.|.++ +.+||+++.+.+.+.++
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 79999999999999999999999985 89999999887654433
No 233
>PF08897 DUF1841: Domain of unknown function (DUF1841); InterPro: IPR014993 This group of proteins are functionally uncharacterised.
Probab=29.01 E-value=42 Score=24.64 Aligned_cols=18 Identities=33% Similarity=0.647 Sum_probs=15.7
Q ss_pred CCccChhHHHHHHHHHHh
Q 027763 17 PSQGHINPTFQFAKRLAS 34 (219)
Q Consensus 17 p~~GH~~P~l~La~~L~~ 34 (219)
|-.|-.||+++|+-.|+=
T Consensus 57 pe~G~tNPFLHlsmHLsI 74 (137)
T PF08897_consen 57 PEQGETNPFLHLSMHLSI 74 (137)
T ss_pred cccCccchhHHHHHHHHH
Confidence 567999999999999874
No 234
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=28.87 E-value=1.5e+02 Score=22.88 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=24.5
Q ss_pred cEEEeCCCc-ccHHHHHHHcCCCeeEEechhhHHH
Q 027763 110 DCVVYDAFL-YWALDVAKGFGLFSAAFFTQTCAVN 143 (219)
Q Consensus 110 d~vI~D~~~-~~~~~vA~~lgiP~v~~~~~~a~~~ 143 (219)
.++|--.+. .||..+|+++|+|.+.+.|+--...
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~~ 95 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVRPYE 95 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHHH
Confidence 355544444 5688999999999999987654443
No 235
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=28.77 E-value=51 Score=22.11 Aligned_cols=35 Identities=26% Similarity=0.329 Sum_probs=22.6
Q ss_pred HHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEc
Q 027763 25 TFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTI 65 (219)
Q Consensus 25 ~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l 65 (219)
++++|++|.+.|++ ++.|....+.++. .++....+
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~----~Gi~~~~v 36 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKE----HGIEVTEV 36 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHH----TT--EEEC
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHH----cCCCceee
Confidence 57899999999955 6677666655553 35664443
No 236
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=28.77 E-value=64 Score=25.41 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeEE
Q 027763 93 KTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAAF 135 (219)
Q Consensus 93 ~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~ 135 (219)
+...++++.+.+.+.+ .+||+..+..++..+|+++|+-.+.-
T Consensus 80 ~ga~elv~~lk~~G~~-v~iiSgg~~~lv~~ia~~lg~d~~~a 121 (212)
T COG0560 80 PGAEELVAALKAAGAK-VVIISGGFTFLVEPIAERLGIDYVVA 121 (212)
T ss_pred ccHHHHHHHHHHCCCE-EEEEcCChHHHHHHHHHHhCCchhee
Confidence 4456777776655433 36678888888999999999877653
No 237
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.76 E-value=32 Score=22.26 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhCCCcEEEEeC
Q 027763 23 NPTFQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 23 ~P~l~La~~L~~rG~~VT~~t~ 44 (219)
+=|+.|..++.++|.+|+|..-
T Consensus 32 iR~M~L~~~wR~~G~~i~F~~L 53 (74)
T COG3433 32 IRMMALLERWRKRGADIDFAQL 53 (74)
T ss_pred HHHHHHHHHHHHcCCcccHHHH
Confidence 4588999999999999998643
No 238
>PLN02828 formyltetrahydrofolate deformylase
Probab=28.74 E-value=1.3e+02 Score=24.77 Aligned_cols=45 Identities=16% Similarity=0.250 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCC--CCccEEEeCCC---cccHHHHHHHcCCCeeEEec
Q 027763 93 KTLAELITKYKSSS--NPIDCVVYDAF---LYWALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 93 ~~l~~~l~~l~~~~--~~~d~vI~D~~---~~~~~~vA~~lgiP~v~~~~ 137 (219)
..+++++.++.... ..+.+||++.- ...+...|+++|||.+.+..
T Consensus 82 ~nl~~ll~~~~~g~l~~eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~ 131 (268)
T PLN02828 82 HCLIDLLHRWQDGRLPVDITCVISNHERGPNTHVMRFLERHGIPYHYLPT 131 (268)
T ss_pred hhHHHHHHhhhcCCCCceEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCC
Confidence 35777877764321 23678888862 22467899999999986644
No 239
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=28.64 E-value=4.1e+02 Score=23.47 Aligned_cols=100 Identities=12% Similarity=0.099 Sum_probs=60.5
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhC--CCcEEEEe-CcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHH
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAI-TNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQN 86 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~r--G~~VT~~t-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~ 86 (219)
-.+-+=..+.|=++-..+|.++|.++ +..|++-| |+...+.++... ...+....+|-+++.
T Consensus 50 p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~-~~~v~h~YlP~D~~~--------------- 113 (419)
T COG1519 50 PLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALF-GDSVIHQYLPLDLPI--------------- 113 (419)
T ss_pred CeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHc-CCCeEEEecCcCchH---------------
Confidence 36677778889999999999999998 77877766 333333332210 123555555522110
Q ss_pred HHHHhhHHHHHHHHHhhcCCCCcc-EEEeCCC-cccHHHHHHHcCCCeeEEec
Q 027763 87 MEVAGLKTLAELITKYKSSSNPID-CVVYDAF-LYWALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~~~~d-~vI~D~~-~~~~~~vA~~lgiP~v~~~~ 137 (219)
.++.+++.+ +|| +||.+.= .+-...-+++.|+|.+....
T Consensus 114 -------~v~rFl~~~-----~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 114 -------AVRRFLRKW-----RPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred -------HHHHHHHhc-----CCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 123344433 245 4556652 23356778899999998755
No 240
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=28.63 E-value=1.1e+02 Score=24.68 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=29.7
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
.|++..=.|-|-..-...||..|+++|++|-++=..
T Consensus 2 ~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 2 VLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 355666677799999999999999999999887554
No 241
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=28.48 E-value=56 Score=25.90 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=21.9
Q ss_pred CccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 18 SQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 18 ~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
|.|++ -..||++|+..||+|++.+.....
T Consensus 8 GtGni--G~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 8 GTGNI--GSALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred ccChH--HHHHHHHHHhCCCeEEEecCCChh
Confidence 34444 357899999999999999876543
No 242
>PLN00016 RNA-binding protein; Provisional
Probab=28.40 E-value=90 Score=26.63 Aligned_cols=36 Identities=33% Similarity=0.391 Sum_probs=24.8
Q ss_pred ceEEEEeC--CCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 9 AHVLIVPY--PSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 9 ~hvvv~p~--p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+|+|+.. .+.|.+ -.+|++.|.++||+|+.++-..
T Consensus 53 ~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 53 KKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred ceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecCC
Confidence 45777621 233443 4678999999999999987643
No 243
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=28.34 E-value=85 Score=24.55 Aligned_cols=29 Identities=28% Similarity=0.189 Sum_probs=22.0
Q ss_pred ccEE-EeCCCccc-HHHHHHHcCCCeeEEec
Q 027763 109 IDCV-VYDAFLYW-ALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 109 ~d~v-I~D~~~~~-~~~vA~~lgiP~v~~~~ 137 (219)
||+| |.|....- |..-|.++|||.+.+.-
T Consensus 109 Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 109 PEVVVVTDPRADHQALKEASEVGIPIVALCD 139 (196)
T ss_pred CCEEEEECCccccHHHHHHHHcCCCEEEEee
Confidence 5655 58886644 67889999999998843
No 244
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=28.30 E-value=80 Score=23.86 Aligned_cols=32 Identities=13% Similarity=0.167 Sum_probs=24.8
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+++++. +-|.+.| |+++|.++|.+|+.+..+.
T Consensus 108 ~~vLvS--gD~DF~~---Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 108 AVALVT--RDADFLP---VINKAKENGKETIVIGAEP 139 (160)
T ss_pred EEEEEe--ccHhHHH---HHHHHHHCCCEEEEEeCCC
Confidence 566665 6777766 6778889999999999764
No 245
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=28.29 E-value=68 Score=28.23 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 21 HINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 21 H~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
|+..|.+++..|.++|++|++.....
T Consensus 51 v~aAMR~Fad~LraeG~~V~Y~~~~~ 76 (505)
T COG3046 51 VFAAMRHFADELRAEGLKVRYERADD 76 (505)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEcCC
Confidence 46789999999999999999988776
No 246
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=28.21 E-value=1.4e+02 Score=24.99 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=24.4
Q ss_pred HHHHHHHhhcCCCCccEEEeCCCccc--HHHHHHHcCCCeeEEec
Q 027763 95 LAELITKYKSSSNPIDCVVYDAFLYW--ALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 95 l~~~l~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~~~~ 137 (219)
+.++++.+.+ .++.||+++....- +..+|++.|++.+.+-+
T Consensus 241 l~~l~~~ik~--~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldp 283 (311)
T PRK09545 241 LHEIRTQLVE--QKATCVFAEPQFRPAVIESVAKGTSVRMGTLDP 283 (311)
T ss_pred HHHHHHHHHH--cCCCEEEecCCCChHHHHHHHHhcCCeEEEecc
Confidence 4444444433 34677777776543 45777777777665533
No 247
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=28.20 E-value=75 Score=25.96 Aligned_cols=33 Identities=18% Similarity=0.394 Sum_probs=27.4
Q ss_pred eEEEEeCCCccCh-hHHHHHHHHHHhCCCcEEEE
Q 027763 10 HVLIVPYPSQGHI-NPTFQFAKRLASKGLKITLA 42 (219)
Q Consensus 10 hvvv~p~p~~GH~-~P~l~La~~L~~rG~~VT~~ 42 (219)
-+++.|+|+.=|+ .|..+++..|.+.|.+..++
T Consensus 73 V~vVamS~gr~Hl~~pvCdIt~~LRr~G~~tn~i 106 (268)
T PF04609_consen 73 VAVVAMSPGRRHLPKPVCDITEYLRRAGAKTNMI 106 (268)
T ss_pred EEEEeCCcccccCCCcHHHHHHHHHHcCCccceE
Confidence 3677889999998 79999999999999776544
No 248
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=28.09 E-value=1e+02 Score=27.90 Aligned_cols=26 Identities=4% Similarity=0.001 Sum_probs=21.5
Q ss_pred CccEEEeCCCcccHHHHHHHcCCCeeEEe
Q 027763 108 PIDCVVYDAFLYWALDVAKGFGLFSAAFF 136 (219)
Q Consensus 108 ~~d~vI~D~~~~~~~~vA~~lgiP~v~~~ 136 (219)
+||+||.+. |...+|+++|||.+..+
T Consensus 374 ~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 589999887 56778999999997654
No 249
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=28.07 E-value=76 Score=22.65 Aligned_cols=40 Identities=13% Similarity=-0.029 Sum_probs=23.5
Q ss_pred HHHHHhhcCCCCccEEEeCCCcc----c--HHHHHHHcCCCeeEEech
Q 027763 97 ELITKYKSSSNPIDCVVYDAFLY----W--ALDVAKGFGLFSAAFFTQ 138 (219)
Q Consensus 97 ~~l~~l~~~~~~~d~vI~D~~~~----~--~~~vA~~lgiP~v~~~~~ 138 (219)
++.+.+.+. ++| +||.+.... + ...+|+++|+|++..+..
T Consensus 3 ~~~~~L~~A-~rP-~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~ 48 (137)
T PF00205_consen 3 EAADLLSSA-KRP-VILAGRGARRSGAAEELRELAEKLGIPVATTPMG 48 (137)
T ss_dssp HHHHHHHH--SSE-EEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGG
T ss_pred HHHHHHHhC-CCE-EEEEcCCcChhhHHHHHHHHHHHHCCCEEecCcc
Confidence 334444333 456 666665433 2 368999999999876543
No 250
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=27.95 E-value=1.9e+02 Score=22.34 Aligned_cols=29 Identities=21% Similarity=0.072 Sum_probs=22.2
Q ss_pred CccEEEe--CCCcccHHHHHHHcCCCeeEEe
Q 027763 108 PIDCVVY--DAFLYWALDVAKGFGLFSAAFF 136 (219)
Q Consensus 108 ~~d~vI~--D~~~~~~~~vA~~lgiP~v~~~ 136 (219)
.+|+|+. .....++..+|+.+|+|.+...
T Consensus 64 ~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~r 94 (202)
T PRK00455 64 EFDVVAGPATGGIPLAAAVARALDLPAIFVR 94 (202)
T ss_pred CCCEEEecccCcHHHHHHHHHHhCCCEEEEe
Confidence 5788873 3455678999999999998764
No 251
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=27.94 E-value=1.3e+02 Score=21.82 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=26.5
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEE
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLA 42 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~ 42 (219)
.|.++-+-..|=..-+..|.+.|.++|++|.++
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~i 34 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVI 34 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEE
Confidence 467777788899999999999999999998854
No 252
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=27.94 E-value=58 Score=26.63 Aligned_cols=28 Identities=11% Similarity=-0.073 Sum_probs=23.2
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
|--.-+.+|++.|+++||.|++++....
T Consensus 16 G~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 16 GIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 4445689999999999999999988754
No 253
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=27.86 E-value=1.4e+02 Score=26.51 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=33.9
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
-|+++-.+|.|=..-...||..|..+|++|.++++..+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 366777889999999999999999999999999987654
No 254
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=27.58 E-value=1.4e+02 Score=23.09 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=22.3
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEE
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITL 41 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~ 41 (219)
+-|++++ -..|-..-+..+|++|+++|+.|.+
T Consensus 15 ~~Vvv~~-d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 15 PAVVVIH-DIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEEE--BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEEc-CCCCCchHHHHHHHHHHhcCCCEEe
Confidence 3455554 5668778888999999999976655
No 255
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=27.43 E-value=62 Score=26.20 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=25.7
Q ss_pred ceEEEEeCCCccCh-hHHHHHHHHHHhCCCcEEEEeC
Q 027763 9 AHVLIVPYPSQGHI-NPTFQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 9 ~hvvv~p~p~~GH~-~P~l~La~~L~~rG~~VT~~t~ 44 (219)
.+|+++.-+|- = -=-+.+||.|+++|++|+++..
T Consensus 61 ~~V~VlcG~GN--NGGDGlv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGN--NGGDGLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCC--CchhHHHHHHHHHHCCCeEEEEEc
Confidence 47888885553 2 1256789999999999999873
No 256
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=27.30 E-value=61 Score=26.68 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=20.6
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
||+.| +...+.|.+.||++.++...
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~d 40 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIGG 40 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEec
Confidence 99999 77777888889999886653
No 257
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=27.25 E-value=1.4e+02 Score=20.83 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=27.0
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
..++++.+... +...++-++.|.+.|.+++++...
T Consensus 10 ~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 10 ADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 46888876655 356788999999999999887654
No 258
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=27.24 E-value=1.5e+02 Score=22.44 Aligned_cols=44 Identities=11% Similarity=0.218 Sum_probs=34.0
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccccc
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTK 51 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~ 51 (219)
...+++.-.+|.|=..=...+++++..+|+.|.|++.......+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 34688999999988888999999999999999999987655444
No 259
>PRK04148 hypothetical protein; Provisional
Probab=27.11 E-value=63 Score=23.60 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=22.7
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+++.+-.. .| ..+|..|++.||+|+.+=...
T Consensus 18 ~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCH
Confidence 467777654 33 346889999999999876544
No 260
>PRK05973 replicative DNA helicase; Provisional
Probab=26.96 E-value=95 Score=25.03 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=35.1
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYKT 50 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~ 50 (219)
-+++..-||.|=..-.++++...+.+|..|.|++.+.....
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~ 106 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQD 106 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Confidence 36677789999999999999999999999999998876443
No 261
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=26.88 E-value=1.5e+02 Score=20.49 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=26.8
Q ss_pred CCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 17 PSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 17 p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
...|...-+.+.++.+.++|..|..+|.....
T Consensus 55 S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s 86 (128)
T cd05014 55 SNSGETDELLNLLPHLKRRGAPIIAITGNPNS 86 (128)
T ss_pred eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 45578888999999999999999888887644
No 262
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=26.83 E-value=69 Score=23.86 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=22.7
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
.+|+++- -|.+ -...++.|.+.|++||++.+.
T Consensus 14 ~~vlVvG---GG~v--a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIG---GGKI--AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEEC---CCHH--HHHHHHHHHhCCCEEEEEcCc
Confidence 3566654 3333 377899999999999999643
No 263
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=26.66 E-value=3.6e+02 Score=22.15 Aligned_cols=28 Identities=25% Similarity=0.205 Sum_probs=19.4
Q ss_pred CccEEEeCC-Cc-ccHHHHHHHcCCCeeEE
Q 027763 108 PIDCVVYDA-FL-YWALDVAKGFGLFSAAF 135 (219)
Q Consensus 108 ~~d~vI~D~-~~-~~~~~vA~~lgiP~v~~ 135 (219)
++|+|.+-. +. .++..+++++|+|.++.
T Consensus 82 ~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~ 111 (367)
T cd05844 82 RPDLVHAHFGFDGVYALPLARRLGVPLVVT 111 (367)
T ss_pred CCCEEEeccCchHHHHHHHHHHcCCCEEEE
Confidence 579887633 22 23567889999999874
No 264
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=26.49 E-value=73 Score=26.11 Aligned_cols=38 Identities=29% Similarity=0.329 Sum_probs=28.9
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
.+++++. .|.| +.|++.+++.|+++|.+|+++....+.
T Consensus 99 ~~~llIa-GGiG-iaPl~~l~~~l~~~~~~v~l~~g~r~~ 136 (281)
T PRK06222 99 GTVVCVG-GGVG-IAPVYPIAKALKEAGNKVITIIGARNK 136 (281)
T ss_pred CeEEEEe-CcCc-HHHHHHHHHHHHHCCCeEEEEEecCCH
Confidence 3677766 3334 899999999999999999988765443
No 265
>PRK14099 glycogen synthase; Provisional
Probab=26.48 E-value=67 Score=28.76 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=28.4
Q ss_pred CceEEEEe-----CCCc-cChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 8 RAHVLIVP-----YPSQ-GHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 8 ~~hvvv~p-----~p~~-GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
++||+++. +.=. |=-.-+-.|.++|+++||+|.++.+.
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 36777664 3323 34467889999999999999999984
No 266
>PRK08939 primosomal protein DnaI; Reviewed
Probab=26.45 E-value=1.2e+02 Score=25.38 Aligned_cols=40 Identities=20% Similarity=0.066 Sum_probs=33.8
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
..+++.--+|.|=..=+..+|+.|+.+|..|+|++.+...
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~ 196 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFI 196 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHH
Confidence 3588888888888888999999999999999998876543
No 267
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=26.29 E-value=1.3e+02 Score=22.28 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=42.9
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCC--CcEEEEeCcccccccCCCC-CCCCeEEEEcc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKG--LKITLAITNFIYKTKKPPQ-PSDSVQIDTIS 66 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG--~~VT~~t~~~~~~~~~~~~-~~~~i~~~~l~ 66 (219)
...+|+++.....+|+.=.+.+.+.+.... +.+.+..-.-....+.... ...++++..+.
T Consensus 58 n~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~Fn 120 (142)
T PF07801_consen 58 NSSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRKFN 120 (142)
T ss_pred cCCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEECC
Confidence 456899999999999999999999999864 7777766554433332211 12567887765
No 268
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=25.64 E-value=93 Score=24.50 Aligned_cols=30 Identities=27% Similarity=0.099 Sum_probs=22.6
Q ss_pred ccEE-EeCCCccc-HHHHHHHcCCCeeEEech
Q 027763 109 IDCV-VYDAFLYW-ALDVAKGFGLFSAAFFTQ 138 (219)
Q Consensus 109 ~d~v-I~D~~~~~-~~~vA~~lgiP~v~~~~~ 138 (219)
||+| |.|....- |..=|.++|||.+.+.-+
T Consensus 115 Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDT 146 (204)
T PRK04020 115 PDVVVVTDPRGDAQAVKEAIEVGIPVVALCDT 146 (204)
T ss_pred CCEEEEECCcccHHHHHHHHHhCCCEEEEEeC
Confidence 5655 58886644 678899999999998543
No 269
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.52 E-value=1.6e+02 Score=21.29 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=32.1
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
++++|++-...+-+|-.=--=++..|...|++|......
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 357888888888899998888888888999999876554
No 270
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=25.29 E-value=80 Score=24.59 Aligned_cols=41 Identities=12% Similarity=0.216 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCee
Q 027763 91 GLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSA 133 (219)
Q Consensus 91 ~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v 133 (219)
..+...++++.+.+. . .-+||++.+-.++..+++++|+..+
T Consensus 69 l~pga~ell~~lk~~-~-~~~IVS~~~~~~~~~il~~lgi~~~ 109 (203)
T TIGR02137 69 PLEGAVEFVDWLRER-F-QVVILSDTFYEFSQPLMRQLGFPTL 109 (203)
T ss_pred CCccHHHHHHHHHhC-C-eEEEEeCChHHHHHHHHHHcCCchh
Confidence 345677888877653 2 3588899988889999999999854
No 271
>PRK11524 putative methyltransferase; Provisional
Probab=25.16 E-value=1.1e+02 Score=25.20 Aligned_cols=37 Identities=19% Similarity=-0.003 Sum_probs=28.1
Q ss_pred ccEEEeCCCccc--HHHHHHHcCCCeeEEechhhHHHHH
Q 027763 109 IDCVVYDAFLYW--ALDVAKGFGLFSAAFFTQTCAVNFI 145 (219)
Q Consensus 109 ~d~vI~D~~~~~--~~~vA~~lgiP~v~~~~~~a~~~~~ 145 (219)
..=+|.|.|++. +..+|+++|--++.+=....++-..
T Consensus 208 ~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a 246 (284)
T PRK11524 208 PGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMG 246 (284)
T ss_pred CCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHH
Confidence 345789999976 4788999999999997776554433
No 272
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=25.14 E-value=2.2e+02 Score=22.07 Aligned_cols=30 Identities=27% Similarity=0.163 Sum_probs=22.9
Q ss_pred CCccEEEe--CCCcccHHHHHHHcCCCeeEEe
Q 027763 107 NPIDCVVY--DAFLYWALDVAKGFGLFSAAFF 136 (219)
Q Consensus 107 ~~~d~vI~--D~~~~~~~~vA~~lgiP~v~~~ 136 (219)
..+|+|+. -...+++..+|..+|+|.+.+.
T Consensus 84 ~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~ 115 (200)
T PRK02277 84 EEVDVVVGIAKSGVPLATLVADELGKDLAIYH 115 (200)
T ss_pred CCCCEEEeeccCCHHHHHHHHHHhCCCcEEEe
Confidence 45899983 3345778999999999987664
No 273
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=25.03 E-value=2e+02 Score=21.75 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCee
Q 027763 92 LKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSA 133 (219)
Q Consensus 92 ~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v 133 (219)
.+...++++.+.+++. .-+|++...-.+...+++++|+..+
T Consensus 89 ~~~~~~~l~~l~~~g~-~v~ivS~s~~~~v~~~~~~lg~~~~ 129 (202)
T TIGR01490 89 YPEARDLIRWHKAEGH-TIVLVSASLTILVKPLARILGIDNA 129 (202)
T ss_pred cHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHcCCcce
Confidence 3455667776654433 2467777777888899999999764
No 274
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=24.89 E-value=1.1e+02 Score=26.67 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=23.8
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+++++ |-|+ .-+ .+|+.|+++|++||++....
T Consensus 7 ~v~ii---G~g~-~G~-~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 7 KVLVV---GAGV-SGL-ALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred EEEEE---CCCH-HHH-HHHHHHHHCCCEEEEEeCCc
Confidence 45554 4555 444 99999999999999987653
No 275
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=24.89 E-value=99 Score=22.41 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=24.9
Q ss_pred EEEeCCCccChhHHHHHHHHHHhC-CCcEEE
Q 027763 12 LIVPYPSQGHINPTFQFAKRLASK-GLKITL 41 (219)
Q Consensus 12 vv~p~p~~GH~~P~l~La~~L~~r-G~~VT~ 41 (219)
+..+.=...|..-+++||..|.+. |.+|.+
T Consensus 5 I~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 5 ISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 445555669999999999999998 999875
No 276
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=24.80 E-value=82 Score=25.79 Aligned_cols=26 Identities=19% Similarity=0.416 Sum_probs=21.2
Q ss_pred cChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 20 GHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 20 GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
||+.|++ ..+.|.+.|+++.++....
T Consensus 17 G~~~~~~-~~~~lq~~g~~~~ilI~D~ 42 (269)
T cd00805 17 GHLVPLM-KLRDFQQAGHEVIVLIGDA 42 (269)
T ss_pred HHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 9999986 6777788899998877764
No 277
>PRK14974 cell division protein FtsY; Provisional
Probab=24.76 E-value=1.7e+02 Score=24.89 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=33.2
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
-|+++-.+|.|=..-...||..|..+|++|.++++...
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 47778889999999999999999999999999887643
No 278
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=24.56 E-value=1.3e+02 Score=27.16 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=21.2
Q ss_pred CccEEEeCCCcccHHHHHHHcCCCeeEEe
Q 027763 108 PIDCVVYDAFLYWALDVAKGFGLFSAAFF 136 (219)
Q Consensus 108 ~~d~vI~D~~~~~~~~vA~~lgiP~v~~~ 136 (219)
++|+||.+. +...+|+++|||.+.+.
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 578888887 57788999999998663
No 279
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=24.52 E-value=1.2e+02 Score=24.35 Aligned_cols=40 Identities=18% Similarity=0.183 Sum_probs=33.7
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhC-CCcEEEEeCcccccc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASK-GLKITLAITNFIYKT 50 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~r-G~~VT~~t~~~~~~~ 50 (219)
+++...|+.|-..-++++|..++.+ |+.|.+++.+.....
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~ 62 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEE 62 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHH
Confidence 5666789999999999999999997 699999999865543
No 280
>PRK12404 stage V sporulation protein AD; Provisional
Probab=24.46 E-value=2.3e+02 Score=24.15 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=21.9
Q ss_pred CccEEEe-CCCc--ccHHHHHHHcCCCeeEEechh
Q 027763 108 PIDCVVY-DAFL--YWALDVAKGFGLFSAAFFTQT 139 (219)
Q Consensus 108 ~~d~vI~-D~~~--~~~~~vA~~lgiP~v~~~~~~ 139 (219)
.+|.++. |... .-+..+++++|||.+-+....
T Consensus 75 DID~i~vGdL~nQ~ipssfvar~LGIP~~gV~gAC 109 (334)
T PRK12404 75 DIQFFLAGDLMNQITPTSFAARTLGIPYLGLFGAC 109 (334)
T ss_pred HCCEEEEEecCCCcCcHHHHHHHhCCCccceeecC
Confidence 3788875 5542 234589999999997665543
No 281
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=24.46 E-value=1.9e+02 Score=24.20 Aligned_cols=39 Identities=13% Similarity=0.176 Sum_probs=26.7
Q ss_pred cccCCCCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeC
Q 027763 2 EEKKIHRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 2 ~~~~~~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~ 44 (219)
|++++...+|+|.- +.| .--.+|+++|+++|++|+.+.-
T Consensus 4 ~~~~~~~~~vLVtG--~~G--fIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 4 EGRESATGTYCVTG--ATG--YIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred cccccCCCEEEEEC--CCc--HHHHHHHHHHHHCCCEEEEEeC
Confidence 34555566777665 334 2346789999999999987643
No 282
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=24.46 E-value=1.1e+02 Score=25.59 Aligned_cols=105 Identities=12% Similarity=0.098 Sum_probs=64.4
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhC--CCcEEEEeCcccccccCCCCCCCCeE-EEEccCCCCCCCCCCcccHHHHHHH
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASK--GLKITLAITNFIYKTKKPPQPSDSVQ-IDTISDGYDDGGFSEAESIDAYLQN 86 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~r--G~~VT~~t~~~~~~~~~~~~~~~~i~-~~~l~~~~~~~~~~~~~~~~~~~~~ 86 (219)
+|+++-..+.|.+.=...+.+.|.++ +.+|++++.+.+.+-++. .+.|+ ++.++.. . ..... ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~---~p~vd~vi~~~~~----~--~~~~~----~~ 67 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSE---NPDINALYGLDRK----K--AKAGE----RK 67 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhc---CCCccEEEEeChh----h--hcchH----HH
Confidence 47888888999999999999999985 899999999877654443 34554 3333211 0 00000 00
Q ss_pred HHHHhhHHHHHHHHHhhcCCCCccEEEeCCCcccHHHHHHHcCCCeeE
Q 027763 87 MEVAGLKTLAELITKYKSSSNPIDCVVYDAFLYWALDVAKGFGLFSAA 134 (219)
Q Consensus 87 ~~~~~~~~l~~~l~~l~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~ 134 (219)
+. ...++++++.+ .++|++|.=....-+..++...|++.-+
T Consensus 68 ~~-----~~~~l~~~lr~--~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 68 LA-----NQFHLIKVLRA--NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred HH-----HHHHHHHHHHh--CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 11 11233444433 4699887432223356788888988644
No 283
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=24.43 E-value=1.8e+02 Score=24.73 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=33.0
Q ss_pred HHHHHHHHhhcCCCCccEEEe-----CCCccc-HHHHHHHcCCCeeEEechhhHHHHHHH
Q 027763 94 TLAELITKYKSSSNPIDCVVY-----DAFLYW-ALDVAKGFGLFSAAFFTQTCAVNFIYY 147 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI~-----D~~~~~-~~~vA~~lgiP~v~~~~~~a~~~~~~~ 147 (219)
..+++++...-+...+|+||+ |..++. +..+.++||+..+.-+-..++|..+.+
T Consensus 59 Aa~~AL~~Agi~~~dIDlII~aT~tpd~~~Ps~A~~vq~~LG~~~~~afDl~aaCsgf~y 118 (323)
T COG0332 59 AARKALEDAGISPDDIDLIIVATSTPDHLFPSTACLVQARLGLGGAPAFDLQAACSGFLY 118 (323)
T ss_pred HHHHHHHHcCCCHHHCCEEEEEcCCcccCCChHHHHHHHHhCCCCcceeechhhhHHHHH
Confidence 344555543211134899985 555555 579999999998665555555544443
No 284
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=24.35 E-value=2.9e+02 Score=20.51 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=19.2
Q ss_pred CccEEE--eCCCcccHHHHHHHcCCCee
Q 027763 108 PIDCVV--YDAFLYWALDVAKGFGLFSA 133 (219)
Q Consensus 108 ~~d~vI--~D~~~~~~~~vA~~lgiP~v 133 (219)
++|+|| .-..+..+..+++.+|+|.+
T Consensus 31 ~~d~vvgv~~GG~~fa~~L~~~L~~~~v 58 (156)
T PRK09177 31 QWKGIIAVTRGGLVPAAILARELGIRLV 58 (156)
T ss_pred CCCEEEEEecCCeehHHHHHHHcCCCce
Confidence 457665 34455678999999999975
No 285
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=24.13 E-value=1.7e+02 Score=20.16 Aligned_cols=31 Identities=16% Similarity=0.070 Sum_probs=25.2
Q ss_pred CccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 18 SQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 18 ~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
..|.-.-+++.++.+.++|..|..+|...+.
T Consensus 55 ~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s 85 (126)
T cd05008 55 QSGETADTLAALRLAKEKGAKTVAITNVVGS 85 (126)
T ss_pred CCcCCHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 4566777999999999999998888887543
No 286
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=24.12 E-value=1.2e+02 Score=25.45 Aligned_cols=30 Identities=7% Similarity=0.031 Sum_probs=24.1
Q ss_pred CCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 17 PSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 17 p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+-|=-.-+..+++.|.+.||+|++++...
T Consensus 10 ~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 10 YGGGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 334666778899999999999999988643
No 287
>CHL00067 rps2 ribosomal protein S2
Probab=24.11 E-value=1.4e+02 Score=23.88 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=22.9
Q ss_pred CccEEE-eCCCcc-cHHHHHHHcCCCeeEEech
Q 027763 108 PIDCVV-YDAFLY-WALDVAKGFGLFSAAFFTQ 138 (219)
Q Consensus 108 ~~d~vI-~D~~~~-~~~~vA~~lgiP~v~~~~~ 138 (219)
.||+|| .|.-.. -+..=|.++|||.+.+.-+
T Consensus 161 ~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDT 193 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRECRKLGIPTISILDT 193 (230)
T ss_pred CCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeC
Confidence 467665 677654 4678899999999988543
No 288
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=23.85 E-value=1.2e+02 Score=26.52 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=24.6
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
++.|||++- .|.+++ ..++.|...+++||++....
T Consensus 9 ~~~~vVIvG-gG~aGl----~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 9 KKPNVVVLG-TGWAGA----YFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred CCCeEEEEC-CCHHHH----HHHHHhCcCCCeEEEEcCCC
Confidence 456788886 444443 45788876789999998654
No 289
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=23.80 E-value=27 Score=20.32 Aligned_cols=10 Identities=40% Similarity=1.205 Sum_probs=8.1
Q ss_pred CCCccChhHH
Q 027763 16 YPSQGHINPT 25 (219)
Q Consensus 16 ~p~~GH~~P~ 25 (219)
|||-||+.|.
T Consensus 35 ~PGn~hlQP~ 44 (45)
T PF08384_consen 35 FPGNGHLQPL 44 (45)
T ss_pred cCCCcccCCC
Confidence 5799999874
No 290
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=23.78 E-value=1.7e+02 Score=20.19 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=25.0
Q ss_pred CCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 17 PSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 17 p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
...|+--.++++++.+.++|..+.++|....
T Consensus 68 S~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~ 98 (139)
T cd05013 68 SFSGETKETVEAAEIAKERGAKVIAITDSAN 98 (139)
T ss_pred eCCCCCHHHHHHHHHHHHcCCeEEEEcCCCC
Confidence 3556777899999999999999888887654
No 291
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=23.75 E-value=86 Score=27.52 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=25.1
Q ss_pred EEEEeCCC---ccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 11 VLIVPYPS---QGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 11 vvv~p~p~---~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+.+=|... -||+.|++. .+.|.+.||++.++....
T Consensus 38 ~G~dPT~~sLHlGhlv~l~~-l~~lq~~G~~~~~ligd~ 75 (410)
T PRK13354 38 LGFDPTAPSLHIGHLVPLMK-LKRFQDAGHRPVILIGGF 75 (410)
T ss_pred EcccCCCCCcchhhHHHHHH-HHHHHHcCCeEEEEEccc
Confidence 34556542 299999666 568889999999887654
No 292
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=23.74 E-value=1.4e+02 Score=26.12 Aligned_cols=27 Identities=15% Similarity=-0.014 Sum_probs=21.1
Q ss_pred CCccEEEeCCCcccHHHHHHHcCCCeeEEe
Q 027763 107 NPIDCVVYDAFLYWALDVAKGFGLFSAAFF 136 (219)
Q Consensus 107 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~ 136 (219)
.++|++|.. +-+..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 368999977 336789999999997653
No 293
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=23.55 E-value=1.5e+02 Score=25.15 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=30.6
Q ss_pred eEEE--EeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 10 HVLI--VPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 10 hvvv--~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
-|.| +...|.|=.--...|++.|.++|++|.+++-.
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRG 88 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRG 88 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCC
Confidence 4555 67889999999999999999999999988754
No 294
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=23.53 E-value=95 Score=25.05 Aligned_cols=37 Identities=38% Similarity=0.525 Sum_probs=28.7
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCC--CcEEEEeCccccc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKG--LKITLAITNFIYK 49 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG--~~VT~~t~~~~~~ 49 (219)
|+++. .+.| +.|+.++++++.++| .+|+++.......
T Consensus 110 vllia-gGtG-~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~ 148 (252)
T COG0543 110 VLLIA-GGTG-IAPLYAIAKELKEKGDANKVTLLYGARTAK 148 (252)
T ss_pred EEEEe-cccC-HhHHHHHHHHHHhcCCCceEEEEEeccChh
Confidence 55555 3444 679999999999999 9999998765543
No 295
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=23.51 E-value=1.7e+02 Score=24.24 Aligned_cols=40 Identities=18% Similarity=0.088 Sum_probs=23.9
Q ss_pred HHHHHHHHhhcCCCCccEEEe-----CCCccc-HHHHHHHcCCCee
Q 027763 94 TLAELITKYKSSSNPIDCVVY-----DAFLYW-ALDVAKGFGLFSA 133 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI~-----D~~~~~-~~~vA~~lgiP~v 133 (219)
..++++++..-....+|+||+ |...+. +..+++++|++..
T Consensus 59 Aa~~aL~~ag~~~~~Id~li~~t~~~d~~~p~~a~~v~~~Lg~~~~ 104 (326)
T PRK05963 59 AGDMALSDAGIERSDIALTLLATSTPDHLLPPSAPLLAHRLGLQNS 104 (326)
T ss_pred HHHHHHHHcCCCHHHCCEEEEECCCCCCCCCcHHHHHHHHhCCCCC
Confidence 345555553111124889986 544444 4689999998553
No 296
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.50 E-value=1.7e+02 Score=24.37 Aligned_cols=42 Identities=10% Similarity=0.028 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCC--CCccEEEeCCCcccHHHHHHHcCCCeeEEec
Q 027763 94 TLAELITKYKSSS--NPIDCVVYDAFLYWALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 94 ~l~~~l~~l~~~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~ 137 (219)
.+++++.+..... -.+.+||+|-- .+...|+++|||.+.+..
T Consensus 106 nl~al~~~~~~~~l~~~i~~visn~~--~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 106 CLNDLLYRWRMGELDMDIVGIISNHP--DLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred cHHHHHHHHHCCCCCcEEEEEEECCh--hHHHHHHHcCCCEEEeCC
Confidence 4788888765432 23667888863 346999999999998753
No 297
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=23.42 E-value=1.7e+02 Score=23.78 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=28.7
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCc--EEEEeC
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLK--ITLAIT 44 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~--VT~~t~ 44 (219)
=||+.-+|..|--.-..+|.++|.++|+. |+++.-
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 47777899999999999999999999965 444433
No 298
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.42 E-value=1.5e+02 Score=22.18 Aligned_cols=30 Identities=17% Similarity=0.014 Sum_probs=19.8
Q ss_pred CccEEEeCCCccc--HHHHHHHcCCCeeEEec
Q 027763 108 PIDCVVYDAFLYW--ALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 108 ~~d~vI~D~~~~~--~~~vA~~lgiP~v~~~~ 137 (219)
+||+||......- ....-++.|||.+.+..
T Consensus 69 ~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 69 KPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 5799987543322 33445689999988753
No 299
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=23.39 E-value=1.6e+02 Score=23.78 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=31.1
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
+++..-+|.|-......+|..++++|.+|-++.+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 3444567889999999999999999999999988754
No 300
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=23.33 E-value=1.6e+02 Score=24.42 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCC--CCccEEEeCCCcccHHHHHHHcCCCeeEEec
Q 027763 93 KTLAELITKYKSSS--NPIDCVVYDAFLYWALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 93 ~~l~~~l~~l~~~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~ 137 (219)
..++++++++.... ..+.+||+|-- .+..+|+++|||++.+..
T Consensus 96 ~nl~~l~~~~~~g~l~~~i~~visn~~--~~~~~A~~~gIp~~~~~~ 140 (280)
T TIGR00655 96 HCLGDLLWRWYSGELDAEIALVISNHE--DLRSLVERFGIPFHYIPA 140 (280)
T ss_pred hhHHHHHHHHHcCCCCcEEEEEEEcCh--hHHHHHHHhCCCEEEcCC
Confidence 46788888765321 23668888873 345579999999988764
No 301
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=23.32 E-value=1.5e+02 Score=22.02 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=33.4
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
+++.--||.|=..-.++++...+..|..|.+++++...+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~ 40 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPE 40 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHH
Confidence 466777899999999999999999999999999876544
No 302
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=23.21 E-value=93 Score=23.07 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCcEEEEeCc
Q 027763 26 FQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~ 45 (219)
..+|+.|+++||+|++....
T Consensus 14 ~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 14 SAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp HHHHHHHHHTTTEEEEEESS
T ss_pred HHHHHHHHhcCCeEEeeccc
Confidence 57899999999999988643
No 303
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=23.19 E-value=1.4e+02 Score=23.08 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=29.1
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHh-CCCcEEEEeCccccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLAS-KGLKITLAITNFIYK 49 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~-rG~~VT~~t~~~~~~ 49 (219)
+|++.-..+-| ..=..+|+++|.+ .|++|.++.|+....
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~ 42 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQ 42 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHH
Confidence 46555555545 5558899999999 599999999986543
No 304
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=23.18 E-value=2e+02 Score=22.27 Aligned_cols=28 Identities=18% Similarity=0.110 Sum_probs=24.0
Q ss_pred CCCccChhHHHHHHHHHHhCCCcEEEEe
Q 027763 16 YPSQGHINPTFQFAKRLASKGLKITLAI 43 (219)
Q Consensus 16 ~p~~GH~~P~l~La~~L~~rG~~VT~~t 43 (219)
-++.|-..-.+.|++.|.++|++|-++-
T Consensus 8 ~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 8 DTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 4456889999999999999999998754
No 305
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=23.15 E-value=2.3e+02 Score=22.60 Aligned_cols=44 Identities=20% Similarity=0.096 Sum_probs=30.1
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCcccH---HHHHHHcCCCeeEEechh
Q 027763 94 TLAELITKYKSSSNPIDCVVYDAFLYWA---LDVAKGFGLFSAAFFTQT 139 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI~D~~~~~~---~~vA~~lgiP~v~~~~~~ 139 (219)
.+.+.-+++.+ ...|+||.|.+.+-. ..+++..|+|++.-.+.-
T Consensus 166 ~l~~Aa~~L~~--~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~lv 212 (221)
T PF07302_consen 166 ELAAAARELAE--QGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTLV 212 (221)
T ss_pred HHHHHHHHHHh--cCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHHH
Confidence 44444555543 357999999987653 478889999998655443
No 306
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=22.98 E-value=3e+02 Score=23.46 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=25.1
Q ss_pred EEEeCCCccChhHHHHHHHHHHhC-C--CcEEEEeCc
Q 027763 12 LIVPYPSQGHINPTFQFAKRLASK-G--LKITLAITN 45 (219)
Q Consensus 12 vv~p~p~~GH~~P~l~La~~L~~r-G--~~VT~~t~~ 45 (219)
++-...|.||......|.+.|.++ | .+|+++-.-
T Consensus 3 ils~~~G~GH~~aa~al~~~~~~~~~~~~~v~~~d~~ 39 (382)
T PLN02605 3 ILMSDTGGGHRASAEAIKDAFQLEFGDEYQVFIVDLW 39 (382)
T ss_pred EEEEcCCcChHHHHHHHHHHHHhhcCCCeeEEEEehh
Confidence 445567889999999999999875 4 456665443
No 307
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=22.97 E-value=74 Score=21.02 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCCcEEEEeCcc
Q 027763 24 PTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 24 P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+-.+...|.++||+|+=+....
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred CchHHHHHHHHCCCEEEecCCcc
Confidence 35678899999999998877654
No 308
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=22.95 E-value=94 Score=27.33 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=21.1
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEe
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t 43 (219)
+.++-..+.| |-.+|+.|+++|++|+..-
T Consensus 2 ~~~iGiggsG----m~~la~~L~~~G~~v~~~D 30 (448)
T TIGR01082 2 IHFVGIGGIG----MSGIAEILLNRGYQVSGSD 30 (448)
T ss_pred EEEEEECHHH----HHHHHHHHHHCCCeEEEEC
Confidence 4455545544 5569999999999998754
No 309
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.95 E-value=1.9e+02 Score=21.09 Aligned_cols=39 Identities=8% Similarity=-0.018 Sum_probs=32.6
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
.+|++-..-+-+|-.=---++..|.+.|++|..+-..-.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~ 40 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSP 40 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCC
Confidence 468888888889999998899999999999998766543
No 310
>PRK07475 hypothetical protein; Provisional
Probab=22.94 E-value=2.7e+02 Score=22.34 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=26.8
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCccc--HHHHHHHcCCCeeEEec
Q 027763 94 TLAELITKYKSSSNPIDCVVYDAFLYW--ALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~~~~ 137 (219)
.+.+.++++.++.+..|+||......- ...+.+++|+|++-..+
T Consensus 182 ~l~~~~~~l~~~~~~~daIvL~CTeLp~~~~~le~~~glPViDs~t 227 (245)
T PRK07475 182 EVVAAARALLERHPDIGAIVLECTNMPPYAAAIQRATGLPVFDIVT 227 (245)
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCcChHHHHHHHHHhcCCCEEeHHH
Confidence 455556665432245899998864432 23555679999975543
No 311
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=22.83 E-value=1.6e+02 Score=23.71 Aligned_cols=36 Identities=8% Similarity=0.058 Sum_probs=28.1
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
.|.++.=.|-|=..-...||..|+++|++|-++=..
T Consensus 2 ~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 2 ILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred EEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 355555556677799999999999999999887443
No 312
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=22.80 E-value=1.3e+02 Score=24.64 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=23.7
Q ss_pred CccEEE-eCCCcc-cHHHHHHHcCCCeeEEechh
Q 027763 108 PIDCVV-YDAFLY-WALDVAKGFGLFSAAFFTQT 139 (219)
Q Consensus 108 ~~d~vI-~D~~~~-~~~~vA~~lgiP~v~~~~~~ 139 (219)
.||+|| .|.--. .+..=|.++|||.+.+.-+.
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 467665 787653 46788999999999985443
No 313
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=22.65 E-value=2.1e+02 Score=25.34 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=34.7
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
..|+++-..|.|=..-+..||..|..+|..|.++++....
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 3577888889999999999999999999999999987543
No 314
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=22.62 E-value=80 Score=26.00 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=17.4
Q ss_pred HHHHHHHHhCCCcEEEEeCc
Q 027763 26 FQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~ 45 (219)
+..|..|+++|++||++-..
T Consensus 12 ~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEeec
Confidence 56788999999999999776
No 315
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=22.60 E-value=3.2e+02 Score=23.30 Aligned_cols=34 Identities=18% Similarity=0.177 Sum_probs=22.7
Q ss_pred CccEEEe-CCCc--ccHHHHHHHcCCCeeEEechhhH
Q 027763 108 PIDCVVY-DAFL--YWALDVAKGFGLFSAAFFTQTCA 141 (219)
Q Consensus 108 ~~d~vI~-D~~~--~~~~~vA~~lgiP~v~~~~~~a~ 141 (219)
.+|+||+ |... ..+..+++++|+|.+-+....+.
T Consensus 71 DID~IIvGdl~~Q~~~As~vA~~LGIP~fdV~~ACST 107 (327)
T TIGR02845 71 DVDFFLAGDLLNQIITANFVARDLGIPFLGLYGACST 107 (327)
T ss_pred HCCEEEEeCCCCcccHHHHHHHHhCCCEEEEeccCHH
Confidence 3788864 5331 24668999999999776654433
No 316
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=22.59 E-value=2.3e+02 Score=22.06 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=27.5
Q ss_pred HHHHHHHHhhcCC--CCccEEEeCCCcccHHHHHHHcCCCeeEEec
Q 027763 94 TLAELITKYKSSS--NPIDCVVYDAFLYWALDVAKGFGLFSAAFFT 137 (219)
Q Consensus 94 ~l~~~l~~l~~~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~ 137 (219)
.++.+++.+.+.. ..+.+||+|--..-+...|++.|||+..+.+
T Consensus 14 ~~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~~ 59 (200)
T PRK05647 14 NLQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLDH 59 (200)
T ss_pred hHHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEECc
Confidence 3455555554322 1245667785333467899999999987654
No 317
>PRK04280 arginine repressor; Provisional
Probab=22.54 E-value=67 Score=23.84 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCcEEEEeCcc
Q 027763 25 TFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 25 ~l~La~~L~~rG~~VT~~t~~~ 46 (219)
--+|++.|.++|+.||=.|-..
T Consensus 21 QeeL~~~L~~~Gi~vTQATiSR 42 (148)
T PRK04280 21 QDELVDRLREEGFNVTQATVSR 42 (148)
T ss_pred HHHHHHHHHHcCCCeehHHHHH
Confidence 3579999999999998777654
No 318
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.52 E-value=1.6e+02 Score=25.73 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=18.9
Q ss_pred CccEEEeCCCcccHHHHHHHcCCCeeEE
Q 027763 108 PIDCVVYDAFLYWALDVAKGFGLFSAAF 135 (219)
Q Consensus 108 ~~d~vI~D~~~~~~~~vA~~lgiP~v~~ 135 (219)
++|+||.+.. ...+|+++|+|.+.+
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 4788888774 468888888888754
No 319
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=22.42 E-value=1.5e+02 Score=21.24 Aligned_cols=36 Identities=28% Similarity=0.334 Sum_probs=26.5
Q ss_pred EEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 13 IVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 13 v~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
+-|.++.|=..-...||+.|+++|++|-++-.....
T Consensus 6 ~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~ 41 (157)
T PF13614_consen 6 WSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFS 41 (157)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS
T ss_pred ECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCC
Confidence 334677788889999999999999998887765433
No 320
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=22.29 E-value=1.6e+02 Score=26.71 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=20.3
Q ss_pred CccEEEeCCCcccHHHHHHHcCCCeeEE
Q 027763 108 PIDCVVYDAFLYWALDVAKGFGLFSAAF 135 (219)
Q Consensus 108 ~~d~vI~D~~~~~~~~vA~~lgiP~v~~ 135 (219)
+||+||.+. +...+|+++|||++.+
T Consensus 362 ~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 362 APELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred CCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 578888766 4678999999998765
No 321
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=22.27 E-value=2.6e+02 Score=21.37 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=30.6
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEE
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLA 42 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~ 42 (219)
+.-|.++.-.+.|=..-.+.+|-+.+.+|++|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 34677888899999999999999999999999654
No 322
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=22.24 E-value=2e+02 Score=23.30 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=27.1
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+++.|++++-.+.+.. -...+++.|.++|++|..+.-+.
T Consensus 17 ~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl~g 55 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDLKS 55 (273)
T ss_pred CCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEecccC
Confidence 3467888885554433 45777888998999987766554
No 323
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=22.18 E-value=1.5e+02 Score=23.29 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=34.5
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+++++.+.+....|..-+.++.++|.+.|.++.++....
T Consensus 138 ~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~ 177 (213)
T cd02069 138 HKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGA 177 (213)
T ss_pred cCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEECh
Confidence 5688999999999999999999999999998888766653
No 324
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=22.16 E-value=1.8e+02 Score=20.41 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=29.3
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
..|++-|..+.|+-. .-.+.+.|...|.++.++.+..
T Consensus 2 ~~vi~Np~sG~~~~~-~~~v~~~l~~~~~~~~~~~t~~ 38 (130)
T PF00781_consen 2 VLVIINPKSGGGRAK-WKKVEPALRAAGIDYEVIETES 38 (130)
T ss_dssp EEEEEETTSTTSHHH-HHHHHHHHHHTTCEEEEEEESS
T ss_pred EEEEECCCCCCCchh-HHHHHHHHHHcCCceEEEEEec
Confidence 357778888888888 6788899999998888776654
No 325
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.14 E-value=1.8e+02 Score=18.28 Aligned_cols=34 Identities=24% Similarity=0.533 Sum_probs=26.1
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeC
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~ 44 (219)
.|++++.. ..+..-.+.+++.|.+.|..|-+...
T Consensus 3 ~v~i~~~~-~~~~~~a~~i~~~Lr~~g~~v~~~~~ 36 (91)
T cd00859 3 DVYVVPLG-EGALSEALELAEQLRDAGIKAEIDYG 36 (91)
T ss_pred cEEEEEcC-hHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 46777744 57778899999999999998876443
No 326
>PRK08309 short chain dehydrogenase; Provisional
Probab=22.13 E-value=1.3e+02 Score=22.81 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=16.7
Q ss_pred HHHHHHHHhCCCcEEEEeCc
Q 027763 26 FQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~ 45 (219)
..+++.|+++|++|++++-.
T Consensus 13 g~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 13 KRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred HHHHHHHHHCcCEEEEEECC
Confidence 45999999999999987643
No 327
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=22.09 E-value=2.4e+02 Score=21.49 Aligned_cols=37 Identities=32% Similarity=0.294 Sum_probs=24.9
Q ss_pred HHHHHhhcCCCCccEEEeC-C-CcccHHHHHHHcCCCeeEE
Q 027763 97 ELITKYKSSSNPIDCVVYD-A-FLYWALDVAKGFGLFSAAF 135 (219)
Q Consensus 97 ~~l~~l~~~~~~~d~vI~D-~-~~~~~~~vA~~lgiP~v~~ 135 (219)
.+.+.+.. ..+|.|+.= . -...+..+|.++|+|.+..
T Consensus 44 ~~~~~~~~--~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 44 ELAERYKD--DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred HHHHHhcc--cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 44444432 358888833 2 3355889999999999876
No 328
>PRK03094 hypothetical protein; Provisional
Probab=22.06 E-value=82 Score=20.83 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCcEEEEeCc
Q 027763 25 TFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 25 ~l~La~~L~~rG~~VT~~t~~ 45 (219)
+..+...|.++|++|.=+.++
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 456889999999999866554
No 329
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.06 E-value=1.9e+02 Score=21.64 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=26.3
Q ss_pred CCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 17 PSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 17 p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
...|...-+...++.+.++|..|..+|.....
T Consensus 80 S~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s 111 (179)
T TIGR03127 80 SGSGETESLVTVAKKAKEIGATVAAITTNPES 111 (179)
T ss_pred eCCCCcHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 34577888999999999999999988886544
No 330
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=21.93 E-value=1.4e+02 Score=20.15 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=31.7
Q ss_pred CceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 8 RAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 8 ~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
..+++++..+|.|-..-+..+++.+...+..+.+++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED 40 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence 357899999999999999999999998875566665554
No 331
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=21.85 E-value=2.6e+02 Score=24.76 Aligned_cols=101 Identities=12% Similarity=0.091 Sum_probs=56.0
Q ss_pred CCCccChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHHHhhHHH
Q 027763 16 YPSQGHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVAGLKTL 95 (219)
Q Consensus 16 ~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (219)
-.+.|=..-...|++.|.++|++|..+=+.. +.+. +. ++..-.+.+..+.+ . ++ ...+.+
T Consensus 8 ~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~--d~~D-----~~--~~~~~~g~~~~~ld---~---~~-----~~~~~i 67 (449)
T TIGR00379 8 SSGVGKTTISTGIMKALSRRKLRVQPFKVGP--DYID-----PM--FHTQATGRPSRNLD---S---FF-----MSEAQI 67 (449)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCceeEEccCC--CCCC-----HH--HHHHHhCCchhhCC---c---cc-----CCHHHH
Confidence 3445778889999999999999998875421 0010 00 00000011110110 0 11 012233
Q ss_pred HHHHHHhhcCCCCccEEEeCCCcc------------cHHHHHHHcCCCeeEEechh
Q 027763 96 AELITKYKSSSNPIDCVVYDAFLY------------WALDVAKGFGLFSAAFFTQT 139 (219)
Q Consensus 96 ~~~l~~l~~~~~~~d~vI~D~~~~------------~~~~vA~~lgiP~v~~~~~~ 139 (219)
.+.++++. .+.|++|++.... ...++|+.+|.|++......
T Consensus 68 ~~~~~~~~---~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 68 QECFHRHS---KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred HHHHHHhc---ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 44444442 3468999776522 25699999999999987654
No 332
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=21.68 E-value=2e+02 Score=23.87 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcCC--CCccEEEeCCCcccHHHHHHHcCCCeeEEe
Q 027763 93 KTLAELITKYKSSS--NPIDCVVYDAFLYWALDVAKGFGLFSAAFF 136 (219)
Q Consensus 93 ~~l~~~l~~l~~~~--~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~ 136 (219)
..++++++++.... ..+.+||+|- ..+..+|+++|||.+.+.
T Consensus 101 ~nl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 101 HCLNDLLYRWRIGELPMDIVGVVSNH--PDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ccHHHHHHHHHcCCCCcEEEEEEECC--ccHHHHHHHhCCCEEEeC
Confidence 35778887764321 2467888874 346677999999998863
No 333
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=21.59 E-value=5e+02 Score=21.93 Aligned_cols=50 Identities=20% Similarity=0.025 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCccc--HHHHHHHcCCCeeEEechhhHH
Q 027763 92 LKTLAELITKYKSSSNPIDCVVYDAFLYW--ALDVAKGFGLFSAAFFTQTCAV 142 (219)
Q Consensus 92 ~~~l~~~l~~l~~~~~~~d~vI~D~~~~~--~~~vA~~lgiP~v~~~~~~a~~ 142 (219)
.+..++.++++.+. .+|.+||++.+..- ...+|++.++|.+.....+...
T Consensus 68 ~~~r~~~~~~l~~~-~~P~iIvt~~~~~p~~l~~~a~~~~ipll~t~~~t~~~ 119 (308)
T PRK05428 68 EEERKERLKKLFSL-EPPCIIVTRGLEPPPELLEAAKEAGIPLLRTPLSTTRL 119 (308)
T ss_pred HHHHHHHHHHHhCC-CCCEEEEECcCCCCHHHHHHHHHcCCcEEEeCCcHHHH
Confidence 34455666666543 45677788887743 5799999999998775544333
No 334
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=21.58 E-value=88 Score=25.72 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCcEEEEeCc
Q 027763 25 TFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 25 ~l~La~~L~~rG~~VT~~t~~ 45 (219)
-+-+|..|+++|++|+++=-.
T Consensus 13 Gl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 13 GLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp HHHHHHHHHHTTCEEEEEESS
T ss_pred HHHHHHHHHhcccccccchhc
Confidence 367899999999999998654
No 335
>CHL00194 ycf39 Ycf39; Provisional
Probab=21.55 E-value=86 Score=25.97 Aligned_cols=31 Identities=13% Similarity=0.373 Sum_probs=21.8
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeC
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~ 44 (219)
+|++. .+.|.+ -.+|+++|.++||+|+.++-
T Consensus 2 kIlVt--GatG~i--G~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 2 SLLVI--GATGTL--GRQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred EEEEE--CCCcHH--HHHHHHHHHHCCCeEEEEEc
Confidence 35544 345543 45789999999999998864
No 336
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=21.54 E-value=2e+02 Score=21.66 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=29.8
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+-++-+-..|=..=+-+|.++|..||++|..+-...
T Consensus 5 l~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 5 LGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred EEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 446667788999999999999999999998875543
No 337
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.54 E-value=1.8e+02 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=25.2
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.||++.+ .++| --+.||++++.+|++||+++-+.
T Consensus 34 ~hi~itg-gS~g---lgl~la~e~~~~ga~Vti~ar~~ 67 (331)
T KOG1210|consen 34 RHILITG-GSSG---LGLALALECKREGADVTITARSG 67 (331)
T ss_pred ceEEEec-Ccch---hhHHHHHHHHHccCceEEEeccH
Confidence 5677665 3333 45789999999999999987653
No 338
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=21.52 E-value=2.7e+02 Score=18.84 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=28.4
Q ss_pred CccEEEeCCCcc-----c--HHHHHHHcCCCeeEEechhhHHHHHHHHH
Q 027763 108 PIDCVVYDAFLY-----W--ALDVAKGFGLFSAAFFTQTCAVNFIYYLV 149 (219)
Q Consensus 108 ~~d~vI~D~~~~-----~--~~~vA~~lgiP~v~~~~~~a~~~~~~~~~ 149 (219)
-+|++..|.... + ...+|+++|+++..-...+....+...|+
T Consensus 18 a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~~~~i~~aa~~hl 66 (111)
T PF13378_consen 18 AVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSMESGIGLAASLHL 66 (111)
T ss_dssp SCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSSSSHHHHHHHHHH
T ss_pred CCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHH
Confidence 478999995332 2 35888999999988776555556666665
No 339
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=21.45 E-value=2.5e+02 Score=21.66 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=30.1
Q ss_pred CceEEEEe--CCCccChhHHHHHHHHHHh-CCCcEEEEeCcc
Q 027763 8 RAHVLIVP--YPSQGHINPTFQFAKRLAS-KGLKITLAITNF 46 (219)
Q Consensus 8 ~~hvvv~p--~p~~GH~~P~l~La~~L~~-rG~~VT~~t~~~ 46 (219)
+.+++.+. -+|.|=-.-...||..|+. +|.+|-++-...
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~ 75 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADL 75 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 34555444 4677999999999999997 699999886654
No 340
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=21.44 E-value=1.8e+02 Score=23.96 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=30.8
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+|++.-=+|-|=..-...||..|+++|.+|-++=...
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4666777788888999999999999999998876543
No 341
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=21.43 E-value=1.6e+02 Score=24.63 Aligned_cols=100 Identities=12% Similarity=0.014 Sum_probs=52.8
Q ss_pred EEeCCCc-cChhHHHHHHHHHHhCCCcEEEEeCcccccccCCCCCCCCeEEEEccCCCCCCCCCCcccHHHHHHHHHHHh
Q 027763 13 IVPYPSQ-GHINPTFQFAKRLASKGLKITLAITNFIYKTKKPPQPSDSVQIDTISDGYDDGGFSEAESIDAYLQNMEVAG 91 (219)
Q Consensus 13 v~p~p~~-GH~~P~l~La~~L~~rG~~VT~~t~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (219)
+++.... |--.-++.|++.|.++|+++++++..... .+.......+++++.++.. . ...+. .+.
T Consensus 7 ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~-~~~~~~~~~~i~~~~~~~~--~-----~~~~~----~~~--- 71 (374)
T TIGR03088 7 VVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVS-AFRKRIQRPDVAFYALHKQ--P-----GKDVA----VYP--- 71 (374)
T ss_pred EeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCC-hhHHHHHhcCceEEEeCCC--C-----CCChH----HHH---
Confidence 4444444 55588999999999999999888743211 1110000125666665421 1 11111 111
Q ss_pred hHHHHHHHHHhhcCCCCccEEEeCCCcc-cHHHHHHHcCCCeeE
Q 027763 92 LKTLAELITKYKSSSNPIDCVVYDAFLY-WALDVAKGFGLFSAA 134 (219)
Q Consensus 92 ~~~l~~~l~~l~~~~~~~d~vI~D~~~~-~~~~vA~~lgiP~v~ 134 (219)
.+..++++ .++|+|-+-.... ++..++...|+|..+
T Consensus 72 --~l~~~l~~-----~~~Divh~~~~~~~~~~~~~~~~~~~~~i 108 (374)
T TIGR03088 72 --QLYRLLRQ-----LRPDIVHTRNLAALEAQLPAALAGVPARI 108 (374)
T ss_pred --HHHHHHHH-----hCCCEEEEcchhHHHHHHHHHhcCCCeEE
Confidence 23333433 2578887544332 344566778888643
No 342
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=21.27 E-value=1.9e+02 Score=23.60 Aligned_cols=31 Identities=10% Similarity=-0.045 Sum_probs=23.1
Q ss_pred CccEEEeCCCc-----c-cHHHHHHHcCCCeeEEech
Q 027763 108 PIDCVVYDAFL-----Y-WALDVAKGFGLFSAAFFTQ 138 (219)
Q Consensus 108 ~~d~vI~D~~~-----~-~~~~vA~~lgiP~v~~~~~ 138 (219)
.+|+|+...-. . -+..+|+.||+|.+.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 38999964433 2 2578999999999988654
No 343
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=21.09 E-value=2.7e+02 Score=21.33 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=29.6
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
-.++.-.||.|-..-+..+.+.+..+|.+|.++++..
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 3556678999999999999999999999998888764
No 344
>PRK10867 signal recognition particle protein; Provisional
Probab=21.09 E-value=2.1e+02 Score=25.32 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.2
Q ss_pred ce-EEEEeCCCccChhHHHHHHHHHHhC-CCcEEEEeCcccc
Q 027763 9 AH-VLIVPYPSQGHINPTFQFAKRLASK-GLKITLAITNFIY 48 (219)
Q Consensus 9 ~h-vvv~p~p~~GH~~P~l~La~~L~~r-G~~VT~~t~~~~~ 48 (219)
++ |+++-.+|.|=..-...||..|+.+ |..|.+++.....
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R 141 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR 141 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence 44 5667788889999999999999998 9999999987654
No 345
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=21.06 E-value=74 Score=25.37 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCCcEEEEeCccc
Q 027763 24 PTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 24 P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
+.++|.+.+.++|..|.|+|....
T Consensus 119 ~a~~l~~~~~~~G~~V~~iT~R~~ 142 (229)
T PF03767_consen 119 GALELYNYARSRGVKVFFITGRPE 142 (229)
T ss_dssp THHHHHHHHHHTTEEEEEEEEEET
T ss_pred HHHHHHHHHHHCCCeEEEEecCCc
Confidence 388999999999999999998653
No 346
>CHL00175 minD septum-site determining protein; Validated
Probab=20.91 E-value=2.2e+02 Score=23.02 Aligned_cols=39 Identities=13% Similarity=0.305 Sum_probs=29.4
Q ss_pred CceEEEEe--CCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 8 RAHVLIVP--YPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 8 ~~hvvv~p--~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
..+++.+. -+|-|=..-...||..|+++|.+|-++-...
T Consensus 14 ~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 14 MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred CceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 34554444 4566778999999999999999988885543
No 347
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=20.91 E-value=1.8e+02 Score=23.44 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=24.2
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+++++++| |.||+. ..|++.+..-|++||++-...
T Consensus 99 p~~~L~If---GaG~va--~~la~la~~lGf~V~v~D~R~ 133 (246)
T TIGR02964 99 PAPHVVLF---GAGHVG--RALVRALAPLPCRVTWVDSRE 133 (246)
T ss_pred CCCEEEEE---CCcHHH--HHHHHHHhcCCCEEEEEeCCc
Confidence 34566655 567773 466777777899999987553
No 348
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=20.86 E-value=2.2e+02 Score=24.87 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=29.0
Q ss_pred eEEEEe--CCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIVP--YPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~p--~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+|+.+. =+|.|=..-..+||..|+.+|++|-++=...
T Consensus 122 ~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 122 QVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred eEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 444333 3677999999999999999999999885543
No 349
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=20.82 E-value=2.2e+02 Score=23.16 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=29.9
Q ss_pred eEEEEeC--CCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 10 HVLIVPY--PSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 10 hvvv~p~--p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+|+++++ .|-|-..-...|+..||.+|+.|.++-..-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 4566664 355888999999999999999999987764
No 350
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=20.80 E-value=81 Score=27.44 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=21.4
Q ss_pred cChhHHH---HHHHHHHhCCCcEEEEeCccc
Q 027763 20 GHINPTF---QFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 20 GH~~P~l---~La~~L~~rG~~VT~~t~~~~ 47 (219)
||+.|++ -++|-+..+|++|-+++....
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGtDe 47 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGTDE 47 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEecch
Confidence 9998766 577888889999999987643
No 351
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=20.79 E-value=1.1e+02 Score=26.59 Aligned_cols=37 Identities=14% Similarity=0.212 Sum_probs=28.3
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
||++.-. |.+...-...+.+.|.+.|++|.++.|+.-
T Consensus 5 ~IllgiT-GSiaa~~~~~ll~~L~~~g~~V~vv~T~~A 41 (390)
T TIGR00521 5 KILLGVT-GGIAAYKTVELVRELVRQGAEVKVIMTEAA 41 (390)
T ss_pred EEEEEEe-CHHHHHHHHHHHHHHHhCCCEEEEEECHhH
Confidence 5665544 445556689999999999999999888743
No 352
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=20.77 E-value=2.3e+02 Score=19.95 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=33.5
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcccc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIY 48 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~ 48 (219)
++++.--+|.|-..-...++..+..+|..|.++..+...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 467777889999999999999999999999999887544
No 353
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.69 E-value=2.7e+02 Score=22.53 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=23.8
Q ss_pred HHHHHHHhhcCCCCccEEEeCCCccc--HH---HHHHHcCCCeeEE
Q 027763 95 LAELITKYKSSSNPIDCVVYDAFLYW--AL---DVAKGFGLFSAAF 135 (219)
Q Consensus 95 l~~~l~~l~~~~~~~d~vI~D~~~~~--~~---~vA~~lgiP~v~~ 135 (219)
+.++++.+.+ .++.||+++....- +. .+|++.|+|.+.+
T Consensus 195 l~~l~~~ik~--~~v~~if~e~~~~~k~~~~l~~la~~~~~~v~~l 238 (264)
T cd01020 195 IAAFQNAIKN--RQIDALIVNPQQASSATTNITGLAKRSGVPVVEV 238 (264)
T ss_pred HHHHHHHHHh--CCCCEEEeCCCCCcHHHHHHHHHHHHcCCCEEee
Confidence 4444554433 35678888876643 22 4588888887654
No 354
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=20.68 E-value=2.3e+02 Score=25.47 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=22.3
Q ss_pred HHHHHHHhhcCCCCccEEEeCCCcc----cHHHHHHHcCCCeeEE
Q 027763 95 LAELITKYKSSSNPIDCVVYDAFLY----WALDVAKGFGLFSAAF 135 (219)
Q Consensus 95 l~~~l~~l~~~~~~~d~vI~D~~~~----~~~~vA~~lgiP~v~~ 135 (219)
+.++++.+.+ .+++||+++.... .+..+|++.|+|.+.+
T Consensus 409 L~~Li~~IK~--~~V~~IF~Epq~~~~~~~l~~IA~e~Gv~V~~l 451 (479)
T TIGR03772 409 RRRLTRTIEN--LKVPAVFLEPNLAARSTTLNEIADELGVRVCAI 451 (479)
T ss_pred HHHHHHHHHH--cCCCEEEEeCCCCCchHHHHHHHHHcCCcEEee
Confidence 4444444433 3467777776553 1457777777776543
No 355
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=20.61 E-value=64 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=15.4
Q ss_pred CCCcccHHHHHHHcCCCeeEEe
Q 027763 115 DAFLYWALDVAKGFGLFSAAFF 136 (219)
Q Consensus 115 D~~~~~~~~vA~~lgiP~v~~~ 136 (219)
+.|+..+..+|++++||.+.=+
T Consensus 87 ~~f~~aa~~ia~ky~VPll~kf 108 (122)
T PF07972_consen 87 DNFCLAADKIAEKYGVPLLYKF 108 (122)
T ss_dssp GGTTHHHHHHHHHHT--EEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEE
Confidence 5566667899999999997643
No 356
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=20.59 E-value=2e+02 Score=25.34 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=16.9
Q ss_pred CccEEEeCCCcccHHHHHHHcCCCeeEE
Q 027763 108 PIDCVVYDAFLYWALDVAKGFGLFSAAF 135 (219)
Q Consensus 108 ~~d~vI~D~~~~~~~~vA~~lgiP~v~~ 135 (219)
++|++|.+.. ...+|+++|||.+..
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 4677776653 567777888887644
No 357
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=20.59 E-value=1.7e+02 Score=19.44 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHh--CCCcEEEEeCcccc
Q 027763 22 INPTFQFAKRLAS--KGLKITLAITNFIY 48 (219)
Q Consensus 22 ~~P~l~La~~L~~--rG~~VT~~t~~~~~ 48 (219)
+.|++.+.+.+.+ .+.+|+++-...+.
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r~~ 36 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGARTP 36 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEESSG
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEccc
Confidence 7899999999995 56889987665444
No 358
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=20.57 E-value=2e+02 Score=22.05 Aligned_cols=42 Identities=17% Similarity=0.087 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhhcCCCCccEEE-eCCCcccHHHHHHHcCCCeeEE
Q 027763 92 LKTLAELITKYKSSSNPIDCVV-YDAFLYWALDVAKGFGLFSAAF 135 (219)
Q Consensus 92 ~~~l~~~l~~l~~~~~~~d~vI-~D~~~~~~~~vA~~lgiP~v~~ 135 (219)
.+.+++.+.++...+ +.++| +..--.=...+++++|||.+.-
T Consensus 48 tpe~~~W~~e~k~~g--i~v~vvSNn~e~RV~~~~~~l~v~fi~~ 90 (175)
T COG2179 48 TPELRAWLAELKEAG--IKVVVVSNNKESRVARAAEKLGVPFIYR 90 (175)
T ss_pred CHHHHHHHHHHHhcC--CEEEEEeCCCHHHHHhhhhhcCCceeec
Confidence 345666666665443 44444 5533333678899999999754
No 359
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=20.53 E-value=2.3e+02 Score=23.01 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=22.4
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
.+|+++.-.+-| ..||+.|..+|+.|++-+...
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~ 35 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAGR 35 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccC
Confidence 357776644444 478999999998887654443
No 360
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.49 E-value=1e+02 Score=24.04 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.9
Q ss_pred HHHHHHHHhCCCcEEEEeCc
Q 027763 26 FQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 26 l~La~~L~~rG~~VT~~t~~ 45 (219)
.++++.|+++|++|+.+...
T Consensus 19 ~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 19 EGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred HHHHHHHHHCCCEEEEEeCC
Confidence 68999999999998877654
No 361
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=20.48 E-value=1.7e+02 Score=25.78 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=21.0
Q ss_pred CCccEEEeCCCcccHHHHHHHcCCCeeEE
Q 027763 107 NPIDCVVYDAFLYWALDVAKGFGLFSAAF 135 (219)
Q Consensus 107 ~~~d~vI~D~~~~~~~~vA~~lgiP~v~~ 135 (219)
.++|++|... -...+|+++|||.+.+
T Consensus 354 ~~pDllig~s---~~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 354 FEPDLAIGTT---PLVQFAKEHGIPALYF 379 (422)
T ss_pred CCCCEEEcCC---cchHHHHHcCCCEEEe
Confidence 3689999873 3667899999999875
No 362
>PLN02686 cinnamoyl-CoA reductase
Probab=20.46 E-value=2.4e+02 Score=23.97 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=21.5
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeC
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~ 44 (219)
+.+++. .+.| .--.+|+++|+++|++|+++.-
T Consensus 54 k~VLVT-GatG--fIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 54 RLVCVT-GGVS--FLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CEEEEE-CCch--HHHHHHHHHHHHCCCEEEEEeC
Confidence 334444 3445 3456789999999999987543
No 363
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=20.46 E-value=88 Score=20.59 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=18.6
Q ss_pred HHHHHHHHHhCCCcEEEEeCcccccccC
Q 027763 25 TFQFAKRLASKGLKITLAITNFIYKTKK 52 (219)
Q Consensus 25 ~l~La~~L~~rG~~VT~~t~~~~~~~~~ 52 (219)
++++++.|.+.|++| +.|+...+.++
T Consensus 2 ~~~~~~~l~~lG~~i--~AT~gTa~~L~ 27 (90)
T smart00851 2 LVELAKRLAELGFEL--VATGGTAKFLR 27 (90)
T ss_pred HHHHHHHHHHCCCEE--EEccHHHHHHH
Confidence 468999999999887 45555444444
No 364
>PRK10481 hypothetical protein; Provisional
Probab=20.43 E-value=2.5e+02 Score=22.50 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=30.2
Q ss_pred HHHHHHHHhhcCCCCccEEEeCCCccc---HHHHHHHcCCCeeEEechhh
Q 027763 94 TLAELITKYKSSSNPIDCVVYDAFLYW---ALDVAKGFGLFSAAFFTQTC 140 (219)
Q Consensus 94 ~l~~~l~~l~~~~~~~d~vI~D~~~~~---~~~vA~~lgiP~v~~~~~~a 140 (219)
.+.+..+++.. ...|+|+.|..... ...+.+.+|+|++.-.+..+
T Consensus 170 ~l~~aa~~L~~--~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~a 217 (224)
T PRK10481 170 ELIDAGKELLD--QGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVA 217 (224)
T ss_pred HHHHHHHHhhc--CCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHH
Confidence 34445555543 35899999987654 34788899999987655443
No 365
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=20.33 E-value=1.8e+02 Score=23.32 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=28.8
Q ss_pred EEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeC
Q 027763 11 VLIVPYPSQGHINPTFQFAKRLASKGLKITLAIT 44 (219)
Q Consensus 11 vvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~ 44 (219)
+.++-+.+.|=..-+..|+++|.++|++|-++-.
T Consensus 4 i~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 4 IGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred EEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 4456667889999999999999999999998853
No 366
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.32 E-value=86 Score=27.35 Aligned_cols=24 Identities=8% Similarity=0.271 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCCCcEEEEeCccc
Q 027763 24 PTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 24 P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
-..-|.++|.+.||+|++++..-.
T Consensus 342 ta~~l~~~m~~~Gh~V~~l~G~l~ 365 (477)
T KOG0332|consen 342 TAMWLYEEMRAEGHQVSLLHGDLT 365 (477)
T ss_pred hHHHHHHHHHhcCceeEEeeccch
Confidence 356789999999999999988643
No 367
>PRK06835 DNA replication protein DnaC; Validated
Probab=20.30 E-value=1.8e+02 Score=24.64 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=33.9
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCccccc
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITNFIYK 49 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~~~~~ 49 (219)
..++++--+|.|=..=...+|+.|..+|+.|.+++......
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 45888888888888888899999999999999988865443
No 368
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=20.30 E-value=1.4e+02 Score=24.71 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.7
Q ss_pred ChhHHHHHHHHHHhCCCcEEEEeCccc
Q 027763 21 HINPTFQFAKRLASKGLKITLAITNFI 47 (219)
Q Consensus 21 H~~P~l~La~~L~~rG~~VT~~t~~~~ 47 (219)
.+-+++.|.+.|.++|+.|.++|....
T Consensus 146 Alp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 146 ALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 356899999999999999999998754
No 369
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=20.29 E-value=2.5e+02 Score=23.10 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=10.9
Q ss_pred ccEEEeCCCccc--HHHHHHHcCCCee
Q 027763 109 IDCVVYDAFLYW--ALDVAKGFGLFSA 133 (219)
Q Consensus 109 ~d~vI~D~~~~~--~~~vA~~lgiP~v 133 (219)
++||+++....- +..+|++.|++.+
T Consensus 229 v~~If~e~~~~~~~~~~ia~~~g~~v~ 255 (286)
T cd01019 229 ATCVFAEPQFHPKIAETLAEGTGAKVG 255 (286)
T ss_pred CcEEEecCCCChHHHHHHHHhcCceEE
Confidence 445554443322 3344445554443
No 370
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=20.26 E-value=2.6e+02 Score=22.64 Aligned_cols=38 Identities=11% Similarity=0.172 Sum_probs=24.6
Q ss_pred CCceEEEEeCCCccChhHHHHHHHHHHhCCC-cEEEEeC
Q 027763 7 HRAHVLIVPYPSQGHINPTFQFAKRLASKGL-KITLAIT 44 (219)
Q Consensus 7 ~~~hvvv~p~p~~GH~~P~l~La~~L~~rG~-~VT~~t~ 44 (219)
+.++|+++|..+...-.-.-...+.|.+.|. +|+++..
T Consensus 27 ~~~rI~~iptAS~~~~~~~~~~~~~~~~lG~~~v~~l~i 65 (250)
T TIGR02069 27 EDAIIVIITSASEEPREVGERYITIFSRLGVKEVKILDV 65 (250)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHcCCceeEEEec
Confidence 4578999997765333334456667778887 4666554
No 371
>PRK12342 hypothetical protein; Provisional
Probab=20.21 E-value=2.2e+02 Score=23.21 Aligned_cols=30 Identities=10% Similarity=0.012 Sum_probs=22.6
Q ss_pred ccEEEeCCCc-----c-cHHHHHHHcCCCeeEEech
Q 027763 109 IDCVVYDAFL-----Y-WALDVAKGFGLFSAAFFTQ 138 (219)
Q Consensus 109 ~d~vI~D~~~-----~-~~~~vA~~lgiP~v~~~~~ 138 (219)
+|+|++.--. . -+..+|+.||+|.+.+...
T Consensus 110 ~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 110 FDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 8999964433 2 2579999999999988643
No 372
>PRK05717 oxidoreductase; Validated
Probab=20.20 E-value=2.4e+02 Score=22.12 Aligned_cols=32 Identities=25% Similarity=0.293 Sum_probs=22.3
Q ss_pred ceEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEe
Q 027763 9 AHVLIVPYPSQGHINPTFQFAKRLASKGLKITLAI 43 (219)
Q Consensus 9 ~hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t 43 (219)
.+.+++.- +.|-+ -.++|++|+++|++|.++.
T Consensus 10 ~k~vlItG-~sg~I--G~~~a~~l~~~g~~v~~~~ 41 (255)
T PRK05717 10 GRVALVTG-AARGI--GLGIAAWLIAEGWQVVLAD 41 (255)
T ss_pred CCEEEEeC-CcchH--HHHHHHHHHHcCCEEEEEc
Confidence 35555553 33333 6788999999999998874
No 373
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=20.20 E-value=1.4e+02 Score=26.64 Aligned_cols=24 Identities=13% Similarity=-0.081 Sum_probs=20.0
Q ss_pred CccEEEeCCCcccHHHHHHHcCCCeeE
Q 027763 108 PIDCVVYDAFLYWALDVAKGFGLFSAA 134 (219)
Q Consensus 108 ~~d~vI~D~~~~~~~~vA~~lgiP~v~ 134 (219)
++|++|.. .+...+|+++|||.+-
T Consensus 393 ~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 393 KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred CCCEEEec---CchhhhhhhcCCCEEE
Confidence 57888886 5678999999999973
No 374
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=20.15 E-value=1.5e+02 Score=24.05 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=21.5
Q ss_pred CccChhHHHHHHHHHHhCCCcEEEEeCcc
Q 027763 18 SQGHINPTFQFAKRLASKGLKITLAITNF 46 (219)
Q Consensus 18 ~~GH~~P~l~La~~L~~rG~~VT~~t~~~ 46 (219)
+.|.+- .+|+++|.++||+|..+....
T Consensus 8 ~tGfiG--~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 8 GAGFIG--SHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred CcccHH--HHHHHHHHhCCCeEEEEeCCC
Confidence 345554 899999999999999988644
No 375
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=20.12 E-value=95 Score=25.47 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=22.2
Q ss_pred eEEEEeCCCccChhHHHHHHHHHHhCCCcEEEEeCc
Q 027763 10 HVLIVPYPSQGHINPTFQFAKRLASKGLKITLAITN 45 (219)
Q Consensus 10 hvvv~p~p~~GH~~P~l~La~~L~~rG~~VT~~t~~ 45 (219)
+|+|. .+.|++- .+|+++|+++||+|+.+...
T Consensus 6 ~ilVt--GatGfIG--~~l~~~L~~~g~~V~~~~r~ 37 (322)
T PLN02662 6 VVCVT--GASGYIA--SWLVKLLLQRGYTVKATVRD 37 (322)
T ss_pred EEEEE--CChHHHH--HHHHHHHHHCCCEEEEEEcC
Confidence 44443 3456654 56899999999999876643
Done!