Query 027764
Match_columns 219
No_of_seqs 270 out of 1391
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 14:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027764.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027764hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542 Cysteine proteinase Ca 100.0 2.7E-31 5.9E-36 240.3 7.2 101 1-106 224-370 (372)
2 PTZ00021 falcipain-2; Provisio 100.0 1.6E-29 3.5E-34 240.1 9.0 107 1-108 333-489 (489)
3 KOG4296 Epithelin/granulin [Si 100.0 1.2E-29 2.6E-34 187.6 5.5 82 129-210 1-82 (90)
4 PTZ00200 cysteine proteinase; 100.0 3.5E-29 7.5E-34 236.0 9.5 105 1-108 302-446 (448)
5 PTZ00203 cathepsin L protease; 100.0 1.1E-28 2.3E-33 226.3 10.5 99 1-105 193-338 (348)
6 KOG1543 Cysteine proteinase Ca 100.0 1.5E-28 3.3E-33 223.4 9.1 101 1-106 179-323 (325)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 2.7E-28 5.9E-33 211.9 10.2 104 2-106 77-237 (239)
8 cd02621 Peptidase_C1A_Cathepsi 99.9 4.7E-28 1E-32 210.3 9.1 98 2-105 79-240 (243)
9 cd02620 Peptidase_C1A_Cathepsi 99.9 6.4E-28 1.4E-32 209.2 9.3 70 29-103 164-234 (236)
10 smart00645 Pept_C1 Papain fami 99.9 1.3E-27 2.9E-32 198.7 9.5 97 2-102 70-170 (174)
11 cd02248 Peptidase_C1A Peptidas 99.9 3.7E-27 8E-32 197.8 9.9 98 2-105 69-210 (210)
12 PF00112 Peptidase_C1: Papain 99.9 1.9E-26 4E-31 192.8 7.4 101 2-106 72-219 (219)
13 PTZ00364 dipeptidyl-peptidase 99.9 7.3E-25 1.6E-29 210.6 10.1 106 1-113 284-464 (548)
14 PTZ00049 cathepsin C-like prot 99.9 1.2E-24 2.5E-29 212.5 8.9 74 30-108 578-677 (693)
15 smart00277 GRAN Granulin. 99.9 1.3E-22 2.9E-27 138.0 3.3 51 130-186 1-51 (51)
16 PTZ00462 Serine-repeat antigen 99.8 1.2E-21 2.6E-26 196.7 8.6 75 30-108 700-782 (1004)
17 cd02619 Peptidase_C1 C1 Peptid 99.8 1E-20 2.2E-25 158.3 7.9 86 2-88 72-213 (223)
18 KOG1544 Predicted cysteine pro 99.7 1.6E-18 3.5E-23 156.9 5.1 96 1-102 281-455 (470)
19 PF00396 Granulin: Granulin; 99.7 1.8E-18 3.8E-23 114.2 2.1 43 140-188 1-43 (43)
20 COG4870 Cysteine protease [Pos 99.4 2.7E-13 5.9E-18 124.4 5.7 42 47-88 263-314 (372)
21 cd00585 Peptidase_C1B Peptidas 99.4 2E-13 4.4E-18 128.9 5.0 58 30-87 318-399 (437)
22 PF03051 Peptidase_C1_2: Pepti 98.4 2.6E-07 5.5E-12 87.8 4.9 40 48-87 359-400 (438)
23 COG3579 PepC Aminopeptidase C 96.5 0.00085 1.8E-08 62.2 1.0 38 48-85 361-400 (444)
24 KOG4128 Bleomycin hydrolases a 76.4 0.29 6.3E-06 45.7 -2.9 37 49-85 372-412 (457)
25 PF13529 Peptidase_C39_2: Pept 72.5 3 6.5E-05 31.5 2.3 23 47-72 122-144 (144)
26 PF14625 Lustrin_cystein: Lust 65.9 4.5 9.8E-05 26.0 1.7 20 125-144 15-34 (45)
27 PF05543 Peptidase_C47: Stapho 58.6 13 0.00027 31.7 3.5 27 47-73 118-145 (175)
28 cd00044 CysPc Calpains, domain 55.5 24 0.00051 31.8 5.1 26 49-74 236-263 (315)
29 PF07829 Toxin_14: Alpha-A con 52.3 5.6 0.00012 23.1 0.3 10 155-164 1-11 (26)
30 smart00289 WR1 Worm-specific r 33.7 28 0.00061 21.1 1.4 20 125-144 12-31 (38)
31 cd00206 snake_toxin Snake toxi 23.0 1.1E+02 0.0024 21.2 3.1 45 129-176 11-62 (64)
32 KOG2675 Adenylate cyclase-asso 22.9 52 0.0011 32.0 1.8 7 52-58 144-150 (480)
33 smart00230 CysPc Calpain-like 22.0 1.8E+02 0.0038 26.4 5.0 25 49-73 228-254 (318)
34 COG4990 Uncharacterized protei 21.3 56 0.0012 28.2 1.5 21 49-73 148-168 (195)
No 1
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-31 Score=240.28 Aligned_cols=101 Identities=44% Similarity=0.884 Sum_probs=90.6
Q ss_pred ChHHHHHHHHcCCCCCCCCCCccccc-----------------------------------------CCcccccccCCce
Q 027764 1 MDYAFEFIIDNGGIDTEEDYPYKAID-----------------------------------------GGGMAFQLYESGI 39 (219)
Q Consensus 1 ~~~A~~yi~~~gGi~~E~~YPY~~~~-----------------------------------------~~~~~f~~Y~~GI 39 (219)
|++||+|+++.+||..|+||||++.. .+...+|+|.+||
T Consensus 224 ~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV 303 (372)
T KOG1542|consen 224 MDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDKSKIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINAKPMQFYRGGV 303 (372)
T ss_pred hhHHHHHHHHhCCccccccCCccccCCCccccchhhceEEEeccEecCCCHHHHHHHHHhcCCeEEEEchHHHHHhcccc
Confidence 68999999999999999999999976 2356799999999
Q ss_pred eeC---CCCCC-CCceEEEEEEeeeC-CeEEEEEeCCCCCCCCCCceEEEeeccCCCcCCceeeccceeeee
Q 027764 40 FTG---RCGTS-LDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 106 (219)
Q Consensus 40 y~~---~c~~~-~~HaVliVGYg~~~-g~~yWivkNSWG~~WG~~Gy~~i~rg~~~~~~g~CgI~~~~~yp~ 106 (219)
+.+ .|+.. +||||||||||.+. .++|||||||||++|||+||+|+.|| .|.|||+.+++-++
T Consensus 304 ~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG-----~N~CGi~~mvss~~ 370 (372)
T KOG1542|consen 304 SCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRG-----SNACGIADMVSSAA 370 (372)
T ss_pred cCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEecc-----ccccccccchhhhh
Confidence 987 78865 79999999999987 89999999999999999999999999 46899999886554
No 2
>PTZ00021 falcipain-2; Provisional
Probab=99.96 E-value=1.6e-29 Score=240.07 Aligned_cols=107 Identities=43% Similarity=0.868 Sum_probs=91.5
Q ss_pred ChHHHHHHHHcCCCCCCCCCCccccc----------------------------------------CCcccccccCCcee
Q 027764 1 MDYAFEFIIDNGGIDTEEDYPYKAID----------------------------------------GGGMAFQLYESGIF 40 (219)
Q Consensus 1 ~~~A~~yi~~~gGi~~E~~YPY~~~~----------------------------------------~~~~~f~~Y~~GIy 40 (219)
+..||+||++++||++|++|||++.. .+..+|++|++|||
T Consensus 333 ~~~Af~yi~~~gGl~tE~~YPY~~~~~~~C~~~~~~~~~~i~~y~~i~~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy 412 (489)
T PTZ00021 333 IPNAFEDMIELGGLCSEDDYPYVSDTPELCNIDRCKEKYKIKSYVSIPEDKFKEAIRFLGPISVSIAVSDDFAFYKGGIF 412 (489)
T ss_pred hHhhhhhhhhccccCcccccCccCCCCCccccccccccceeeeEEEecHHHHHHHHHhcCCeEEEEEeecccccCCCCcC
Confidence 35799999988899999999998741 22358999999999
Q ss_pred eCCCCCCCCceEEEEEEeeeC----------CeEEEEEeCCCCCCCCCCceEEEeeccCCCcCCceeeccceeeeecC
Q 027764 41 TGRCGTSLDHGVTAVGYGTEN----------GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKK 108 (219)
Q Consensus 41 ~~~c~~~~~HaVliVGYg~~~----------g~~yWivkNSWG~~WG~~Gy~~i~rg~~~~~~g~CgI~~~~~yp~~~ 108 (219)
++.|+..++|||+|||||+++ +.+|||||||||++|||+|||||+|+.+.. .++|||.+.++||++.
T Consensus 413 ~~~C~~~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~-~n~CGI~t~a~yP~~~ 489 (489)
T PTZ00021 413 DGECGEEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGL-MKTCSLGTEAYVPLIE 489 (489)
T ss_pred CCCCCCccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCC-CCCCCCcccceeEecC
Confidence 988987889999999999753 247999999999999999999999986433 4789999999999863
No 3
>KOG4296 consensus Epithelin/granulin [Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-29 Score=187.63 Aligned_cols=82 Identities=52% Similarity=1.423 Sum_probs=79.4
Q ss_pred CCCccccCCCCcccccccCCCcccccccccCCCceecCCCCccCCCCCCcccCCCCeeeCCCCCCcccccccccCCcccc
Q 027764 129 CDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYW 208 (219)
Q Consensus 129 C~~~~~Cp~~~TCC~~~~~~~~c~~~gCCp~~~avCC~d~~hCCP~g~~~C~~~~~~C~~~~~~~~~~~~~~k~~a~~~~ 208 (219)
||.+++||+++||||+.+.+++|.+||||||++||||+|+.|||||+||+||+.+++|++..++++.+..|+|.||++.|
T Consensus 1 Cd~~~~Cp~~~TCCcl~e~~~~cfsWgCCp~e~A~CCdD~~hCCPh~ypVCD~~~~~Cl~k~ns~~sikal~kkpA~~~~ 80 (90)
T KOG4296|consen 1 CDSYTECPDSETCCCLYEYGGYCFSWGCCPMESAVCCDDRSHCCPHGYPVCDLQRSTCLMKKNSPTSIKALKKKPAIKTL 80 (90)
T ss_pred CCcceecCCCCceEEeeecCceeceeccccCCcceeecCCCccCCCCCcccccccceeeccCCCcccchhhccCCccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cc
Q 027764 209 AH 210 (219)
Q Consensus 209 ~~ 210 (219)
..
T Consensus 81 ~~ 82 (90)
T KOG4296|consen 81 ER 82 (90)
T ss_pred cc
Confidence 53
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=99.96 E-value=3.5e-29 Score=236.01 Aligned_cols=105 Identities=43% Similarity=0.868 Sum_probs=90.5
Q ss_pred ChHHHHHHHHcCCCCCCCCCCccccc--------------------------------------CCcccccccCCceeeC
Q 027764 1 MDYAFEFIIDNGGIDTEEDYPYKAID--------------------------------------GGGMAFQLYESGIFTG 42 (219)
Q Consensus 1 ~~~A~~yi~~~gGi~~E~~YPY~~~~--------------------------------------~~~~~f~~Y~~GIy~~ 42 (219)
+..||+||+++ ||++|++|||++.. .+..+|++|++|||++
T Consensus 302 ~~~A~~yi~~~-Gi~~e~~YPY~~~~~~C~~~~~~~~~i~~y~~~~~~~~l~~~l~~GPV~v~i~~~~~f~~Yk~GIy~~ 380 (448)
T PTZ00200 302 PDTALEYVKNK-GLSSSSDVPYLAKDGKCVVSSTKKVYIDSYLVAKGKDVLNKSLVISPTVVYIAVSRELLKYKSGVYNG 380 (448)
T ss_pred HHHHHHHHhhc-CccccccCCCCCCCCCCcCCCCCeeEecceEecCHHHHHHHHHhcCCEEEEeecccccccCCCCcccc
Confidence 35799999776 99999999998743 2346899999999998
Q ss_pred CCCCCCCceEEEEEEee--eCCeEEEEEeCCCCCCCCCCceEEEeeccCCCcCCceeeccceeeeecC
Q 027764 43 RCGTSLDHGVTAVGYGT--ENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPIKK 108 (219)
Q Consensus 43 ~c~~~~~HaVliVGYg~--~~g~~yWivkNSWG~~WG~~Gy~~i~rg~~~~~~g~CgI~~~~~yp~~~ 108 (219)
.|+..++|||+|||||. ++|++|||||||||++|||+|||||.|+... .+.|||++.+.||++.
T Consensus 381 ~C~~~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g--~n~CGI~~~~~~P~~~ 446 (448)
T PTZ00200 381 ECGKSLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEG--TDKCGILTVGLTPVFY 446 (448)
T ss_pred ccCCCCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCC--CCcCCccccceeeEEe
Confidence 89877899999999984 4688999999999999999999999997421 4789999999999863
No 5
>PTZ00203 cathepsin L protease; Provisional
Probab=99.95 E-value=1.1e-28 Score=226.33 Aligned_cols=99 Identities=39% Similarity=0.790 Sum_probs=82.8
Q ss_pred ChHHHHHHHHc--CCCCCCCCCCccccc--------------------------------------------CCcccccc
Q 027764 1 MDYAFEFIIDN--GGIDTEEDYPYKAID--------------------------------------------GGGMAFQL 34 (219)
Q Consensus 1 ~~~A~~yi~~~--gGi~~E~~YPY~~~~--------------------------------------------~~~~~f~~ 34 (219)
+..||+||+++ +||.+|++|||++.+ ....+|++
T Consensus 193 ~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a~~f~~ 272 (348)
T PTZ00203 193 MLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFMS 272 (348)
T ss_pred HHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCcCHHHHHHHHHhCCCEEEEEEhhhhcC
Confidence 35799999864 679999999997531 11248999
Q ss_pred cCCceeeCCCC-CCCCceEEEEEEeeeCCeEEEEEeCCCCCCCCCCceEEEeeccCCCcCCceeeccceeee
Q 027764 35 YESGIFTGRCG-TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 105 (219)
Q Consensus 35 Y~~GIy~~~c~-~~~~HaVliVGYg~~~g~~yWivkNSWG~~WG~~Gy~~i~rg~~~~~~g~CgI~~~~~yp 105 (219)
|++|||+. |. ..+||||+|||||+++|++|||||||||++|||+|||||.||. +.|||+..+.+.
T Consensus 273 Y~~GIy~~-c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~-----n~Cgi~~~~~~~ 338 (348)
T PTZ00203 273 YHSGVLTS-CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGV-----NACLLTGYPVSV 338 (348)
T ss_pred ccCceeec-cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCC-----CcccccceEEEE
Confidence 99999985 64 4679999999999988999999999999999999999999984 579998666554
No 6
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-28 Score=223.35 Aligned_cols=101 Identities=53% Similarity=1.036 Sum_probs=86.4
Q ss_pred ChHHHHHHHHcCCCCCCCCCCccccc-----------------------------------------CCcccccccCCce
Q 027764 1 MDYAFEFIIDNGGIDTEEDYPYKAID-----------------------------------------GGGMAFQLYESGI 39 (219)
Q Consensus 1 ~~~A~~yi~~~gGi~~E~~YPY~~~~-----------------------------------------~~~~~f~~Y~~GI 39 (219)
|..||+|++++|++.+|++|||.+.+ .+..+|++|++||
T Consensus 179 ~~~A~~yi~~~G~~t~~~~Ypy~~~~~~C~~~~~~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GV 258 (325)
T KOG1543|consen 179 PKNAFKYIKKNGGVTECENYPYIGKDGTCKSNKKDKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGV 258 (325)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCcCCCCCccCCCccceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCce
Confidence 57899999999666669999998754 2335899999999
Q ss_pred eeCCCCC--CCCceEEEEEEeeeCCeEEEEEeCCCCCCCCCCceEEEeeccCCCcCCceeeccceee-ee
Q 027764 40 FTGRCGT--SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY-PI 106 (219)
Q Consensus 40 y~~~c~~--~~~HaVliVGYg~~~g~~yWivkNSWG~~WG~~Gy~~i~rg~~~~~~g~CgI~~~~~y-p~ 106 (219)
|.+.+.. ..+|||+|||||+.++.+|||||||||+.|||+|||||.|+. +.|+|++.++| |+
T Consensus 259 y~~~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~-----~~~~I~~~~~~~p~ 323 (325)
T KOG1543|consen 259 YAEEKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGV-----NKCGIASEASYGPI 323 (325)
T ss_pred EeCCCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCC-----CchhhhcccccCCC
Confidence 9986544 589999999999966789999999999999999999999996 45789998887 54
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=99.95 E-value=2.7e-28 Score=211.86 Aligned_cols=104 Identities=27% Similarity=0.605 Sum_probs=86.5
Q ss_pred hHHHHHHHHcCCCCCCCCCCcccc-----------------------c--------------------------------
Q 027764 2 DYAFEFIIDNGGIDTEEDYPYKAI-----------------------D-------------------------------- 26 (219)
Q Consensus 2 ~~A~~yi~~~gGi~~E~~YPY~~~-----------------------~-------------------------------- 26 (219)
..||+|++++ ||.+|++|||++. .
T Consensus 77 ~~a~~~~~~~-Gl~~e~~yPY~~~~~~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~~~~~~~~~~i~~~l~~~GPV~v~i 155 (239)
T cd02698 77 GGVYEYAHKH-GIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCGI 155 (239)
T ss_pred HHHHHHHHHc-CcCCCCeeCCcCCCCCCcCCCCCCCcccCcccccccccceEEeeeceecCCHHHHHHHHHHcCCEEEEE
Confidence 5799999886 8999999999641 0
Q ss_pred CCcccccccCCceeeCC-CCCCCCceEEEEEEeeeC-CeEEEEEeCCCCCCCCCCceEEEeeccCCCcCCceeeccceee
Q 027764 27 GGGMAFQLYESGIFTGR-CGTSLDHGVTAVGYGTEN-GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASY 104 (219)
Q Consensus 27 ~~~~~f~~Y~~GIy~~~-c~~~~~HaVliVGYg~~~-g~~yWivkNSWG~~WG~~Gy~~i~rg~~~~~~g~CgI~~~~~y 104 (219)
.+..+|++|++|||+.. |....+|||+|||||+++ +++|||||||||++|||+|||||.|+...-..++|||++++.|
T Consensus 156 ~~~~~f~~Y~~GIy~~~~~~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~ 235 (239)
T cd02698 156 MATEALENYTGGVYKEYVQDPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAW 235 (239)
T ss_pred EecccccccCCeEEccCCCCCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceEE
Confidence 23358999999999864 455679999999999876 9999999999999999999999999862222478999999988
Q ss_pred ee
Q 027764 105 PI 106 (219)
Q Consensus 105 p~ 106 (219)
+.
T Consensus 236 ~~ 237 (239)
T cd02698 236 AD 237 (239)
T ss_pred Ee
Confidence 64
No 8
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=99.95 E-value=4.7e-28 Score=210.29 Aligned_cols=98 Identities=41% Similarity=0.809 Sum_probs=82.4
Q ss_pred hHHHHHHHHcCCCCCCCCCCccc-cc-----------------------------------------------CCccccc
Q 027764 2 DYAFEFIIDNGGIDTEEDYPYKA-ID-----------------------------------------------GGGMAFQ 33 (219)
Q Consensus 2 ~~A~~yi~~~gGi~~E~~YPY~~-~~-----------------------------------------------~~~~~f~ 33 (219)
..||+|++++ ||++|++|||++ .. .+..+|+
T Consensus 79 ~~a~~~~~~~-Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F~ 157 (243)
T cd02621 79 FLVGKFAEDF-GIVTEDYFPYTADDDRPCKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFD 157 (243)
T ss_pred HHHHHHHHhc-CcCCCceeCCCCCCCCCCCCCccccccccccceeEcccccccCCHHHHHHHHHHcCCEEEEEEeccccc
Confidence 4789999876 899999999976 11 2336899
Q ss_pred ccCCceeeCC-----CCC---------CCCceEEEEEEeeeC--CeEEEEEeCCCCCCCCCCceEEEeeccCCCcCCcee
Q 027764 34 LYESGIFTGR-----CGT---------SLDHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCG 97 (219)
Q Consensus 34 ~Y~~GIy~~~-----c~~---------~~~HaVliVGYg~~~--g~~yWivkNSWG~~WG~~Gy~~i~rg~~~~~~g~Cg 97 (219)
+|++|||+.. |.. ..+|||+|||||++. +++|||||||||++|||+|||||+|+. +.||
T Consensus 158 ~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~-----~~cg 232 (243)
T cd02621 158 FYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGT-----NECG 232 (243)
T ss_pred ccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCC-----cccC
Confidence 9999999864 642 469999999999876 899999999999999999999999984 5799
Q ss_pred eccceeee
Q 027764 98 IAMEASYP 105 (219)
Q Consensus 98 I~~~~~yp 105 (219)
|++.+.+.
T Consensus 233 i~~~~~~~ 240 (243)
T cd02621 233 IESQAVFA 240 (243)
T ss_pred cccceEee
Confidence 99887653
No 9
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=99.95 E-value=6.4e-28 Score=209.17 Aligned_cols=70 Identities=41% Similarity=0.919 Sum_probs=62.1
Q ss_pred cccccccCCceeeCCCCC-CCCceEEEEEEeeeCCeEEEEEeCCCCCCCCCCceEEEeeccCCCcCCceeecccee
Q 027764 29 GMAFQLYESGIFTGRCGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEAS 103 (219)
Q Consensus 29 ~~~f~~Y~~GIy~~~c~~-~~~HaVliVGYg~~~g~~yWivkNSWG~~WG~~Gy~~i~rg~~~~~~g~CgI~~~~~ 103 (219)
.++|++|++|||+..+.. ..+|||+|||||++++++|||||||||++|||+|||||+|+. +.|||++++.
T Consensus 164 ~~~f~~Y~~Giy~~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~-----~~cgi~~~~~ 234 (236)
T cd02620 164 YEDFLYYKSGVYQHTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGS-----NECGIESEVV 234 (236)
T ss_pred chhhhhcCCcEEeecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccC-----ccccccccee
Confidence 468999999999876554 458999999999989999999999999999999999999984 5799998764
No 10
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=99.95 E-value=1.3e-27 Score=198.73 Aligned_cols=97 Identities=55% Similarity=1.089 Sum_probs=81.7
Q ss_pred hHHHHHHHHcCCCCCCCCCCccccc-CCcccccccCCceeeC-CCCC-CCCceEEEEEEeee-CCeEEEEEeCCCCCCCC
Q 027764 2 DYAFEFIIDNGGIDTEEDYPYKAID-GGGMAFQLYESGIFTG-RCGT-SLDHGVTAVGYGTE-NGADYWIVKNSWGSSWG 77 (219)
Q Consensus 2 ~~A~~yi~~~gGi~~E~~YPY~~~~-~~~~~f~~Y~~GIy~~-~c~~-~~~HaVliVGYg~~-~g~~yWivkNSWG~~WG 77 (219)
..||+|+++++||.+|++|||++.. ....+|++|++|||+. .|.. ..+|+|+|||||.+ ++++|||||||||+.||
T Consensus 70 ~~a~~~~~~~~Gi~~e~~~PY~~~~~~~~~~f~~Y~~Gi~~~~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG 149 (174)
T smart00645 70 DNAFEYIKKNGGLETESCYPYTGSVAIDASDFQFYKSGIYDHPGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWG 149 (174)
T ss_pred HHHHHHHHHcCCcccccccCcccEEEEEcccccCCcCeEECCCCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcc
Confidence 5799999887789999999997643 2234699999999987 4764 37999999999987 89999999999999999
Q ss_pred CCceEEEeeccCCCcCCceeeccce
Q 027764 78 EAGYIRMERNVAGTLTGKCGIAMEA 102 (219)
Q Consensus 78 ~~Gy~~i~rg~~~~~~g~CgI~~~~ 102 (219)
|+|||||.|+. .+.|+|+...
T Consensus 150 ~~G~~~i~~~~----~~~c~i~~~~ 170 (174)
T smart00645 150 ENGYFRIARGK----NNECGIEASV 170 (174)
T ss_pred cCeEEEEEcCC----CCccCceeee
Confidence 99999999984 2579996543
No 11
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=99.94 E-value=3.7e-27 Score=197.85 Aligned_cols=98 Identities=58% Similarity=1.165 Sum_probs=83.1
Q ss_pred hHHHHHHHHcCCCCCCCCCCccccc------------------------------------------CCcccccccCCce
Q 027764 2 DYAFEFIIDNGGIDTEEDYPYKAID------------------------------------------GGGMAFQLYESGI 39 (219)
Q Consensus 2 ~~A~~yi~~~gGi~~E~~YPY~~~~------------------------------------------~~~~~f~~Y~~GI 39 (219)
..||+|++++ ||++|++|||.+.. .+.++|+.|++||
T Consensus 69 ~~a~~~~~~~-Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Gi 147 (210)
T cd02248 69 DNAFEYVKNG-GLASESDYPYTGKDGTCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGI 147 (210)
T ss_pred HHhHHHHHHC-CcCccccCCccCCCCCccCCCCcccEEEeeEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCc
Confidence 4789988765 99999999997632 2346899999999
Q ss_pred eeCCCC--CCCCceEEEEEEeeeCCeEEEEEeCCCCCCCCCCceEEEeeccCCCcCCceeeccceeee
Q 027764 40 FTGRCG--TSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYP 105 (219)
Q Consensus 40 y~~~c~--~~~~HaVliVGYg~~~g~~yWivkNSWG~~WG~~Gy~~i~rg~~~~~~g~CgI~~~~~yp 105 (219)
|..... ...+|||+|||||++.+++|||||||||++||++|||||.++. +.|||+.++.||
T Consensus 148 y~~~~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~-----~~cgi~~~~~~~ 210 (210)
T cd02248 148 YSGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGS-----NLCGIASYASYP 210 (210)
T ss_pred eeCCCCCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCC-----CccCceeeeecC
Confidence 986433 4569999999999988999999999999999999999999984 579999887765
No 12
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=99.93 E-value=1.9e-26 Score=192.82 Aligned_cols=101 Identities=49% Similarity=0.942 Sum_probs=84.3
Q ss_pred hHHHHHHHHcCCCCCCCCCCccccc--------------------------------------------CCcc-cccccC
Q 027764 2 DYAFEFIIDNGGIDTEEDYPYKAID--------------------------------------------GGGM-AFQLYE 36 (219)
Q Consensus 2 ~~A~~yi~~~gGi~~E~~YPY~~~~--------------------------------------------~~~~-~f~~Y~ 36 (219)
.+||+|++++.||++|++|||.+.. .+.. +|+.|+
T Consensus 72 ~~a~~~~~~~~Gi~~e~~~pY~~~~~~~c~~~~~~~~~~~i~~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~ 151 (219)
T PF00112_consen 72 FDALKYIKNNNGIVTEEDYPYNGNENPTCKSKKSNSYYVKIKGYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYK 151 (219)
T ss_dssp HHHHHHHHHHTSBEBTTTS--SSSSSCSSCHSGGGEEEBEESEEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEE
T ss_pred cccceeecccCcccccccccccccccccccccccccccccccccccccccchhHHHHHHhhCceeeeeeecccccccccc
Confidence 4799999984599999999998632 2234 599999
Q ss_pred CceeeCC-CCC-CCCceEEEEEEeeeCCeEEEEEeCCCCCCCCCCceEEEeeccCCCcCCceeeccceeeee
Q 027764 37 SGIFTGR-CGT-SLDHGVTAVGYGTENGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAMEASYPI 106 (219)
Q Consensus 37 ~GIy~~~-c~~-~~~HaVliVGYg~~~g~~yWivkNSWG~~WG~~Gy~~i~rg~~~~~~g~CgI~~~~~yp~ 106 (219)
+|||... +.. ..+|||+|||||++.++.|||||||||+.||++|||||.|+.+ ++|||+.+++||+
T Consensus 152 ~gi~~~~~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~----~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 152 SGIYDPPDCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYN----NECGIESQAVYPI 219 (219)
T ss_dssp SSEECSTSSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSS----SGGGTTSSEEEEE
T ss_pred ceeeeccccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCC----CcCccCceeeecC
Confidence 9999874 654 5699999999999999999999999999999999999999863 4799999999985
No 13
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=99.91 E-value=7.3e-25 Score=210.61 Aligned_cols=106 Identities=29% Similarity=0.527 Sum_probs=83.1
Q ss_pred ChHHHHHHHHcCCCCCCCCC--Cccccc--------------------------------------------------CC
Q 027764 1 MDYAFEFIIDNGGIDTEEDY--PYKAID--------------------------------------------------GG 28 (219)
Q Consensus 1 ~~~A~~yi~~~gGi~~E~~Y--PY~~~~--------------------------------------------------~~ 28 (219)
+..||+|++++ ||++|++| ||++.+ .+
T Consensus 284 p~~A~~yi~~~-GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaIda 362 (548)
T PTZ00364 284 PEEVGKFAETF-GILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYA 362 (548)
T ss_pred HHHHHHHHHhC-CcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEEEEe
Confidence 45799999876 99999999 996321 22
Q ss_pred cccccccCCceeeC---------CC-----------CCCCCceEEEEEEee-eCCeEEEEEeCCCCC--CCCCCceEEEe
Q 027764 29 GMAFQLYESGIFTG---------RC-----------GTSLDHGVTAVGYGT-ENGADYWIVKNSWGS--SWGEAGYIRME 85 (219)
Q Consensus 29 ~~~f~~Y~~GIy~~---------~c-----------~~~~~HaVliVGYg~-~~g~~yWivkNSWG~--~WG~~Gy~~i~ 85 (219)
..+|++|++|||.+ .| ...+||||+|||||+ ++|++|||||||||+ +|||+|||||+
T Consensus 363 ~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~ 442 (548)
T PTZ00364 363 NSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIA 442 (548)
T ss_pred chHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEE
Confidence 35789999998752 11 134699999999997 478999999999999 99999999999
Q ss_pred eccCCCcCCceeeccceeeeecCCCCCC
Q 027764 86 RNVAGTLTGKCGIAMEASYPIKKGQNPP 113 (219)
Q Consensus 86 rg~~~~~~g~CgI~~~~~yp~~~~~~Pp 113 (219)
||. |+|||++++..... .|.|+
T Consensus 443 RG~-----N~CGIes~~v~~~~-~~~~~ 464 (548)
T PTZ00364 443 RGV-----NAYNIESEVVVMYW-APYPD 464 (548)
T ss_pred cCC-----Ccccccceeeeeee-ecCCC
Confidence 984 57999999864333 44433
No 14
>PTZ00049 cathepsin C-like protein; Provisional
Probab=99.91 E-value=1.2e-24 Score=212.51 Aligned_cols=74 Identities=35% Similarity=0.820 Sum_probs=62.8
Q ss_pred ccccccCCceeeC-------CCCC---------------CCCceEEEEEEeee--CCe--EEEEEeCCCCCCCCCCceEE
Q 027764 30 MAFQLYESGIFTG-------RCGT---------------SLDHGVTAVGYGTE--NGA--DYWIVKNSWGSSWGEAGYIR 83 (219)
Q Consensus 30 ~~f~~Y~~GIy~~-------~c~~---------------~~~HaVliVGYg~~--~g~--~yWivkNSWG~~WG~~Gy~~ 83 (219)
.+|++|++|||+. .|.. .++|||+|||||++ +|+ +|||||||||++||++||||
T Consensus 578 ~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfK 657 (693)
T PTZ00049 578 PDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFK 657 (693)
T ss_pred hhhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEE
Confidence 5899999999974 2632 36999999999975 464 79999999999999999999
Q ss_pred EeeccCCCcCCceeeccceeeeecC
Q 027764 84 MERNVAGTLTGKCGIAMEASYPIKK 108 (219)
Q Consensus 84 i~rg~~~~~~g~CgI~~~~~yp~~~ 108 (219)
|.||. +.|||++++.|+...
T Consensus 658 I~RG~-----N~CGIEs~a~~~~pd 677 (693)
T PTZ00049 658 IIRGK-----NFSGIESQSLFIEPD 677 (693)
T ss_pred EEcCC-----CccCCccceeEEeee
Confidence 99994 579999999887643
No 15
>smart00277 GRAN Granulin.
Probab=99.86 E-value=1.3e-22 Score=138.04 Aligned_cols=51 Identities=51% Similarity=1.357 Sum_probs=48.1
Q ss_pred CCccccCCCCcccccccCCCcccccccccCCCceecCCCCccCCCCCCcccCCCCee
Q 027764 130 DNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTC 186 (219)
Q Consensus 130 ~~~~~Cp~~~TCC~~~~~~~~c~~~gCCp~~~avCC~d~~hCCP~g~~~C~~~~~~C 186 (219)
|.+++||+++|||++.+ +.||||||++||||+|++||||+|| +||++.++|
T Consensus 1 d~~~~Cp~~~TCC~~~~-----g~wgCCP~~~AvCC~D~~hCCP~gy-~Cd~~~~~C 51 (51)
T smart00277 1 DSATSCPDGTTCCLLPQ-----GSWGCCPLPNAVCCEDGIHCCPHGY-HCDTDGGTC 51 (51)
T ss_pred CCcccCCCCCeEcCCCC-----CCEECCCCCCCCccCCCCccCCCCC-eeCCCCCcC
Confidence 56789999999999998 6899999999999999999999999 999998876
No 16
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=99.85 E-value=1.2e-21 Score=196.67 Aligned_cols=75 Identities=36% Similarity=0.718 Sum_probs=61.5
Q ss_pred ccccccC-Ccee-eCCCCC-CCCceEEEEEEeee-----CCeEEEEEeCCCCCCCCCCceEEEeeccCCCcCCceeeccc
Q 027764 30 MAFQLYE-SGIF-TGRCGT-SLDHGVTAVGYGTE-----NGADYWIVKNSWGSSWGEAGYIRMERNVAGTLTGKCGIAME 101 (219)
Q Consensus 30 ~~f~~Y~-~GIy-~~~c~~-~~~HaVliVGYg~~-----~g~~yWivkNSWG~~WG~~Gy~~i~rg~~~~~~g~CgI~~~ 101 (219)
.+|++|. +||| ...|+. .++|||+|||||.+ ++++|||||||||+.|||+|||||.|+. .+.|||...
T Consensus 700 sdf~~Y~~sGIyv~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g----~n~CGin~i 775 (1004)
T PTZ00462 700 ENVLGYEFNGKKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYG----PSHCEDNFI 775 (1004)
T ss_pred ehHHhhhcCCccccCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCC----CCCCccchh
Confidence 3678884 8976 456874 57999999999964 2579999999999999999999999843 467999888
Q ss_pred eeeeecC
Q 027764 102 ASYPIKK 108 (219)
Q Consensus 102 ~~yp~~~ 108 (219)
..++++.
T Consensus 776 ~t~~~fn 782 (1004)
T PTZ00462 776 HSVVIFN 782 (1004)
T ss_pred eeeeeEe
Confidence 8888765
No 17
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=99.83 E-value=1e-20 Score=158.30 Aligned_cols=86 Identities=36% Similarity=0.561 Sum_probs=69.3
Q ss_pred hHHHH-HHHHcCCCCCCCCCCccccc----------------------------------------------CCcccccc
Q 027764 2 DYAFE-FIIDNGGIDTEEDYPYKAID----------------------------------------------GGGMAFQL 34 (219)
Q Consensus 2 ~~A~~-yi~~~gGi~~E~~YPY~~~~----------------------------------------------~~~~~f~~ 34 (219)
..|+. +++++ ||++|++|||.... .+...|..
T Consensus 72 ~~~~~~~~~~~-Gi~~e~~~Py~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~ 150 (223)
T cd02619 72 LSALLKLVALK-GIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDR 150 (223)
T ss_pred HHHHHHHHHHc-CCCccccCCCCCCCCCCCCCCccchhhcceeecceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhc
Confidence 35776 66555 99999999997642 33467889
Q ss_pred cCCceee------CCCC-CCCCceEEEEEEeeeC--CeEEEEEeCCCCCCCCCCceEEEeecc
Q 027764 35 YESGIFT------GRCG-TSLDHGVTAVGYGTEN--GADYWIVKNSWGSSWGEAGYIRMERNV 88 (219)
Q Consensus 35 Y~~GIy~------~~c~-~~~~HaVliVGYg~~~--g~~yWivkNSWG~~WG~~Gy~~i~rg~ 88 (219)
|++|+|. ..+. ...+|||+|||||++. +++|||||||||+.||++||+||.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 151 LKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred ccCccccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 9999862 2233 3469999999999876 899999999999999999999999874
No 18
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only]
Probab=99.74 E-value=1.6e-18 Score=156.87 Aligned_cols=96 Identities=32% Similarity=0.683 Sum_probs=79.9
Q ss_pred ChHHHHHHHHcCCCCCCCCCCccccc------------------------------------------------------
Q 027764 1 MDYAFEFIIDNGGIDTEEDYPYKAID------------------------------------------------------ 26 (219)
Q Consensus 1 ~~~A~~yi~~~gGi~~E~~YPY~~~~------------------------------------------------------ 26 (219)
++.|+=||.+. |++...+|||.+..
T Consensus 281 lDRAWWYlRKr-GvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkE 359 (470)
T KOG1544|consen 281 LDRAWWYLRKR-GVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKE 359 (470)
T ss_pred ccchheeeecc-cccccccccccCCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecCCeeccCCHHHHHHH
Confidence 46788898765 99999999998643
Q ss_pred -----------CCcccccccCCceeeCCCC---------CCCCceEEEEEEeeeC-----CeEEEEEeCCCCCCCCCCce
Q 027764 27 -----------GGGMAFQLYESGIFTGRCG---------TSLDHGVTAVGYGTEN-----GADYWIVKNSWGSSWGEAGY 81 (219)
Q Consensus 27 -----------~~~~~f~~Y~~GIy~~~c~---------~~~~HaVliVGYg~~~-----g~~yWivkNSWG~~WG~~Gy 81 (219)
.++++|..|++|||++.-. ....|+|.|.|||++. ..+|||.-||||+.|||+||
T Consensus 360 lM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GY 439 (470)
T KOG1544|consen 360 LMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGY 439 (470)
T ss_pred HHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCce
Confidence 5789999999999986321 1337999999999862 36899999999999999999
Q ss_pred EEEeeccCCCcCCceeeccce
Q 027764 82 IRMERNVAGTLTGKCGIAMEA 102 (219)
Q Consensus 82 ~~i~rg~~~~~~g~CgI~~~~ 102 (219)
|||.||+ |+|-|++..
T Consensus 440 FriLRGv-----NecdIEsfv 455 (470)
T KOG1544|consen 440 FRILRGV-----NECDIESFV 455 (470)
T ss_pred EEEeccc-----cchhhhHhh
Confidence 9999996 569998765
No 19
>PF00396 Granulin: Granulin; InterPro: IPR000118 Metazoan granulins [] are a family of cysteine-rich peptides of about 6 Kd which may have multiple biological activity. A precursor protein (known as acrogranin) potentially encodes seven different forms of granulin (grnA to grnG) which are probably released by post-translational proteolytic processing. Granulins are evolutionary related to a PMP-D1, a peptide extracted from the pars intercerebralis of migratory locusts []. A schematic representation of the structure of a granulin is shown below: xxxCxxxxxCxxxxxCCxxxxxxxxCCxxxxxxCCxxxxxCCxxxxxCxxxxxxCx 'C': conserved cysteine probably involved in a disulphide bond. In plants a granulin domain is often associated with the C terminus of cysteine proteases belong to the MEROPS peptidase family C1, subfamily C1A (papain).; PDB: 1I8Y_A 1QGM_A 1I8X_A 2JYT_A 2JYU_A 1FWO_A 2JYV_A 2JYE_A 1G26_A.
Probab=99.72 E-value=1.8e-18 Score=114.23 Aligned_cols=43 Identities=44% Similarity=1.229 Sum_probs=39.7
Q ss_pred cccccccCCCcccccccccCCCceecCCCCccCCCCCCcccCCCCeeeC
Q 027764 140 TCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLM 188 (219)
Q Consensus 140 TCC~~~~~~~~c~~~gCCp~~~avCC~d~~hCCP~g~~~C~~~~~~C~~ 188 (219)
|||.+.+ +.|+||||++||||+|++||||+|| +||++.++|+|
T Consensus 1 TCC~~~~-----g~~~CCP~~~avCC~D~~hCCP~G~-~C~~~~~~C~k 43 (43)
T PF00396_consen 1 TCCKTPS-----GGYGCCPYPNAVCCSDGKHCCPHGY-TCDPDGGSCIK 43 (43)
T ss_dssp EEEE-TT-----SSEEEEETSSSTTSSTTTTSSSTTS-EEECTTTEEES
T ss_pred CCcccCC-----CCccccCCCCCCccCCCCccCCCcC-EECCCCCEEcC
Confidence 7998887 5799999999999999999999999 99999999986
No 20
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.7e-13 Score=124.36 Aligned_cols=42 Identities=40% Similarity=0.864 Sum_probs=36.8
Q ss_pred CCCceEEEEEEeee----------CCeEEEEEeCCCCCCCCCCceEEEeecc
Q 027764 47 SLDHGVTAVGYGTE----------NGADYWIVKNSWGSSWGEAGYIRMERNV 88 (219)
Q Consensus 47 ~~~HaVliVGYg~~----------~g~~yWivkNSWG~~WG~~Gy~~i~rg~ 88 (219)
..+|||+||||++. .|...||||||||++||++|||||.+..
T Consensus 263 ~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 263 NWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred cccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 45899999999975 2456999999999999999999999864
No 21
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.40 E-value=2e-13 Score=128.91 Aligned_cols=58 Identities=29% Similarity=0.559 Sum_probs=48.4
Q ss_pred ccccccCCceeeCC----------------------CCCCCCceEEEEEEeee-CCe-EEEEEeCCCCCCCCCCceEEEe
Q 027764 30 MAFQLYESGIFTGR----------------------CGTSLDHGVTAVGYGTE-NGA-DYWIVKNSWGSSWGEAGYIRME 85 (219)
Q Consensus 30 ~~f~~Y~~GIy~~~----------------------c~~~~~HaVliVGYg~~-~g~-~yWivkNSWG~~WG~~Gy~~i~ 85 (219)
..|+.|++||++.. +....+|||+||||+.+ +|+ .||+||||||+.||++|||+|+
T Consensus 318 ~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms 397 (437)
T cd00585 318 GKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMS 397 (437)
T ss_pred ChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCCCCcceEEEEcccCCCCCCCcceehh
Confidence 35789999999642 23356899999999975 476 6999999999999999999998
Q ss_pred ec
Q 027764 86 RN 87 (219)
Q Consensus 86 rg 87 (219)
++
T Consensus 398 ~~ 399 (437)
T cd00585 398 DD 399 (437)
T ss_pred HH
Confidence 75
No 22
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=98.41 E-value=2.6e-07 Score=87.77 Aligned_cols=40 Identities=35% Similarity=0.771 Sum_probs=34.0
Q ss_pred CCceEEEEEEee-eCCe-EEEEEeCCCCCCCCCCceEEEeec
Q 027764 48 LDHGVTAVGYGT-ENGA-DYWIVKNSWGSSWGEAGYIRMERN 87 (219)
Q Consensus 48 ~~HaVliVGYg~-~~g~-~yWivkNSWG~~WG~~Gy~~i~rg 87 (219)
.+|||+|||... ++|+ .+|+|+||||+..|.+|||.|+..
T Consensus 359 ~tHAM~itGv~~D~~g~p~~wkVeNSWG~~~g~kGy~~msd~ 400 (438)
T PF03051_consen 359 MTHAMVITGVDLDEDGKPVRWKVENSWGTDNGDKGYFYMSDD 400 (438)
T ss_dssp -EEEEEEEEEEE-TTSSEEEEEEE-SBTTTSTBTTEEEEEHH
T ss_pred CceeEEEEEEEeccCCCeeEEEEEcCCCCCCCCCcEEEECHH
Confidence 489999999997 5666 599999999999999999999843
No 23
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=96.54 E-value=0.00085 Score=62.22 Aligned_cols=38 Identities=34% Similarity=0.706 Sum_probs=32.7
Q ss_pred CCceEEEEEEee-eCCe-EEEEEeCCCCCCCCCCceEEEe
Q 027764 48 LDHGVTAVGYGT-ENGA-DYWIVKNSWGSSWGEAGYIRME 85 (219)
Q Consensus 48 ~~HaVliVGYg~-~~g~-~yWivkNSWG~~WG~~Gy~~i~ 85 (219)
+.|||+|.|.+. ++|. --|.|.||||..=|.+|||-++
T Consensus 361 mTHAMvlTGvd~d~~g~p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 361 MTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred HHHHHHhhccccccCCCceeeEeecccccccCCCceEeeh
Confidence 379999999985 4444 4799999999999999999886
No 24
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=76.43 E-value=0.29 Score=45.73 Aligned_cols=37 Identities=30% Similarity=0.571 Sum_probs=31.1
Q ss_pred CceEEEEEEee-e---CCeEEEEEeCCCCCCCCCCceEEEe
Q 027764 49 DHGVTAVGYGT-E---NGADYWIVKNSWGSSWGEAGYIRME 85 (219)
Q Consensus 49 ~HaVliVGYg~-~---~g~~yWivkNSWG~~WG~~Gy~~i~ 85 (219)
.||++|.|-+. + .+-.-|-|.||||.+-|.+||.+|.
T Consensus 372 thAml~T~v~~kd~~~g~~~~~rVenswgkd~gkkg~~~mt 412 (457)
T KOG4128|consen 372 THAMLLTSVGLKDPATGGLNEHRVENSWGKDLGKKGVNKMT 412 (457)
T ss_pred HHHHHhhhccccCcccCCchhhhhhchhhhhccccchhhhh
Confidence 79999998883 2 3455799999999999999998875
No 25
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=72.47 E-value=3 Score=31.47 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=15.3
Q ss_pred CCCceEEEEEEeeeCCeEEEEEeCCC
Q 027764 47 SLDHGVTAVGYGTENGADYWIVKNSW 72 (219)
Q Consensus 47 ~~~HaVliVGYg~~~g~~yWivkNSW 72 (219)
...|.|+|+||..+. +++|..+|
T Consensus 122 ~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 122 YGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred cCCEEEEEEEEeCCC---EEEEeCCC
Confidence 358999999998642 67777665
No 26
>PF14625 Lustrin_cystein: Lustrin, cysteine-rich repeated domain
Probab=65.89 E-value=4.5 Score=25.97 Aligned_cols=20 Identities=30% Similarity=0.730 Sum_probs=15.4
Q ss_pred CCCCCCCccccCCCCccccc
Q 027764 125 PPAVCDNYYSCPESNTCCCV 144 (219)
Q Consensus 125 ~~~~C~~~~~Cp~~~TCC~~ 144 (219)
.+..|+....||.+.+|=..
T Consensus 15 ~~~~C~~~~~CP~~y~C~~~ 34 (45)
T PF14625_consen 15 QPVSCSPDNSCPSGYSCHFS 34 (45)
T ss_pred CeeECcCCCCCCCcCEeeec
Confidence 45689887889999998433
No 27
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=58.61 E-value=13 Score=31.73 Aligned_cols=27 Identities=30% Similarity=0.620 Sum_probs=20.3
Q ss_pred CCCceEEEEEEee-eCCeEEEEEeCCCC
Q 027764 47 SLDHGVTAVGYGT-ENGADYWIVKNSWG 73 (219)
Q Consensus 47 ~~~HaVliVGYg~-~~g~~yWivkNSWG 73 (219)
..+||++||||-. .+|.++.++=|-|-
T Consensus 118 ~~gHAlavvGya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 118 HAGHALAVVGYAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp --EEEEEEEEEEEETTSEEEEEEE-TT-
T ss_pred ccceeEEEEeeeecCCCCeEEEEeCCcc
Confidence 4689999999986 46789999999884
No 28
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=55.51 E-value=24 Score=31.84 Aligned_cols=26 Identities=19% Similarity=0.464 Sum_probs=23.2
Q ss_pred CceEEEEEEeeeC--CeEEEEEeCCCCC
Q 027764 49 DHGVTAVGYGTEN--GADYWIVKNSWGS 74 (219)
Q Consensus 49 ~HaVliVGYg~~~--g~~yWivkNSWG~ 74 (219)
+||-.|+++-+.+ +...-.|||-||.
T Consensus 236 ~HaY~Vl~~~~~~~~~~~lv~lrNPWg~ 263 (315)
T cd00044 236 GHAYSVLDVREVQEEGLRLLRLRNPWGV 263 (315)
T ss_pred CcceEEeEEEEEccCceEEEEecCCccC
Confidence 8999999998766 8899999999994
No 29
>PF07829 Toxin_14: Alpha-A conotoxin PIVA-like protein; InterPro: IPR012498 Alpha-A conotoxin PIVA (P55963 from SWISSPROT) is the major paralytic toxin found in the venom produced by the piscivorous snail Conus purpurascens. This peptide acts by blocking the acetylcholine-binding site of the nicotinic acetylcholine receptor at the neuromuscular junction []. The overall shape of the peptide is described as an "iron" with a highly charged hydrophilic loop of 15S-19R forming the "handle" domain that is exposed to the exterior of the protein. The stability of the conotoxin is primarily governed by three disulphide bonds. A triangular structural motif formed by residues 19R, 12H and 6Y is thought to constitute a "binding core" that is important in binding to the acetylcholine receptor []. ; GO: 0030550 acetylcholine receptor inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1PQR_A 1P1P_A.
Probab=52.35 E-value=5.6 Score=23.14 Aligned_cols=10 Identities=60% Similarity=1.693 Sum_probs=6.0
Q ss_pred ccc-cCCCcee
Q 027764 155 GCC-PLEAATC 164 (219)
Q Consensus 155 gCC-p~~~avC 164 (219)
||| |++||.|
T Consensus 1 gccg~ypnaac 11 (26)
T PF07829_consen 1 GCCGPYPNAAC 11 (26)
T ss_dssp --STTSSSSS-
T ss_pred CCccCCCCccc
Confidence 466 8999988
No 30
>smart00289 WR1 Worm-specific repeat type 1. Worm-specific repeat type 1. Cysteine-rich domain apparently unique (so far) to C. elegans. Often appears with KU domains. About 3 dozen worm proteins contain this domain.
Probab=33.74 E-value=28 Score=21.12 Aligned_cols=20 Identities=30% Similarity=0.669 Sum_probs=15.9
Q ss_pred CCCCCCCccccCCCCccccc
Q 027764 125 PPAVCDNYYSCPESNTCCCV 144 (219)
Q Consensus 125 ~~~~C~~~~~Cp~~~TCC~~ 144 (219)
.+..|+....||.+.+|=..
T Consensus 12 ~~~~C~~~~~CP~g~~C~~~ 31 (38)
T smart00289 12 SPVRCSPNGSCPSGYSCQNS 31 (38)
T ss_pred CCeECCCCCCCCCCCEEecC
Confidence 34679888999999998754
No 31
>cd00206 snake_toxin Snake toxin domain, present in short and long neurotoxins, cytotoxins and short toxins, and in other miscellaneous venom peptides. The toxin acts by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and preventing the binding of acetylcholine, thereby blocking the excitation of muscles. This domain contains 60-75 amino acids that are fixed by 4-5 disulfide bridges and is nearly all beta sheet; it exists as either monomers or dimers.
Probab=22.98 E-value=1.1e+02 Score=21.20 Aligned_cols=45 Identities=22% Similarity=0.514 Sum_probs=26.9
Q ss_pred CCCccccCCCCccccccc----CCCccccccc---ccCCCceecCCCCccCCCCC
Q 027764 129 CDNYYSCPESNTCCCVFE----YGNSCFAWGC---CPLEAATCCDDHYSCCPHDY 176 (219)
Q Consensus 129 C~~~~~Cp~~~TCC~~~~----~~~~c~~~gC---Cp~~~avCC~d~~hCCP~g~ 176 (219)
+.....||++++-|-... ..++-.++|| ||-...- ..+.||-.+.
T Consensus 11 ~~~~~tC~~ge~~Cyk~~~~~~~~g~~i~rGCa~tCP~~~~~---~~v~CC~TD~ 62 (64)
T cd00206 11 PFTTETCPDGENICYKKSWKDTPRGVRIERGCAATCPKVKPG---EYVTCCTTDK 62 (64)
T ss_pred CCcceeCCcccCccceeEEEcCCCCCEEEccccCcCcCCCCC---cceEecCCCC
Confidence 444566998888776442 1223467888 5655432 3467777664
No 32
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=22.92 E-value=52 Score=31.98 Aligned_cols=7 Identities=29% Similarity=0.705 Sum_probs=3.1
Q ss_pred EEEEEEe
Q 027764 52 VTAVGYG 58 (219)
Q Consensus 52 VliVGYg 58 (219)
+-+.||=
T Consensus 144 i~algWV 150 (480)
T KOG2675|consen 144 IPALGWV 150 (480)
T ss_pred cccceeE
Confidence 3444553
No 33
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=22.04 E-value=1.8e+02 Score=26.43 Aligned_cols=25 Identities=20% Similarity=0.480 Sum_probs=20.5
Q ss_pred CceEEEEEEeeeCCeE--EEEEeCCCC
Q 027764 49 DHGVTAVGYGTENGAD--YWIVKNSWG 73 (219)
Q Consensus 49 ~HaVliVGYg~~~g~~--yWivkNSWG 73 (219)
+||=.|++....++.+ .-.|||-||
T Consensus 228 ~HaYsVl~v~~~~~~~~~Ll~lrNPWg 254 (318)
T smart00230 228 GHAYSVTDVREVQGRRQELLRLRNPWG 254 (318)
T ss_pred CccEEEEEEEEEecCCeEEEEEECCCC
Confidence 8998888887655444 899999998
No 34
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.29 E-value=56 Score=28.22 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=15.3
Q ss_pred CceEEEEEEeeeCCeEEEEEeCCCC
Q 027764 49 DHGVTAVGYGTENGADYWIVKNSWG 73 (219)
Q Consensus 49 ~HaVliVGYg~~~g~~yWivkNSWG 73 (219)
-|+|+|+||++ .|...-+.||
T Consensus 148 ~H~v~itgyDk----~n~yynDpyG 168 (195)
T COG4990 148 IHSVLITGYDK----YNIYYNDPYG 168 (195)
T ss_pred eeeeEeecccc----cceEeccccc
Confidence 49999999985 3555556663
Done!