BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027765
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P9O|A Chain A, Structure Of Dutpase From Arabidopsis Thaliana
pdb|2P9O|B Chain B, Structure Of Dutpase From Arabidopsis Thaliana
pdb|2P9O|C Chain C, Structure Of Dutpase From Arabidopsis Thaliana
pdb|2PC5|A Chain A, Native Crystal Structure Analysis On Arabidopsis Dutpase
pdb|2PC5|B Chain B, Native Crystal Structure Analysis On Arabidopsis Dutpase
pdb|2PC5|C Chain C, Native Crystal Structure Analysis On Arabidopsis Dutpase
Length = 169
Score = 265 bits (678), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/163 (80%), Positives = 147/163 (90%), Gaps = 1/163 (0%)
Query: 58 VKEPSPKIPKLHQNGVENDNIGS-LLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPA 116
V EPSPK+ KL +NG+ D+ S +VKKLSEKAV+P RGSPL+AGYDLSSA ++KVPA
Sbjct: 7 VNEPSPKLQKLDRNGIHGDSSPSPFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKVPA 66
Query: 117 RGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD 176
RGKAL+PTDLSIA+PEGTYARIAPRSGLAWKHS+DVGAGVIDADYRGPVGVILFNHSD D
Sbjct: 67 RGKALIPTDLSIAVPEGTYARIAPRSGLAWKHSIDVGAGVIDADYRGPVGVILFNHSDAD 126
Query: 177 FVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 219
F VK GDRIAQLIIEKIVTPDV+EV++LD TVRG+GGFGSTGV
Sbjct: 127 FEVKFGDRIAQLIIEKIVTPDVVEVDDLDETVRGDGGFGSTGV 169
>pdb|3SO2|A Chain A, Chlorella Dutpase
Length = 146
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/138 (67%), Positives = 113/138 (81%)
Query: 82 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPR 141
LRV L+E AVLPKRGS AAG+DL+S +T+VPARG+A+V T L IAIP GTYAR+APR
Sbjct: 7 LRVHLLNEHAVLPKRGSAGAAGFDLASCEDTEVPARGRAVVKTGLQIAIPPGTYARVAPR 66
Query: 142 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEV 201
SGLA KH +D GAGV+D DYRG VGV+LFNH + F V+ GDR+AQLI+E+I TP+V+EV
Sbjct: 67 SGLAVKHFIDTGAGVVDEDYRGEVGVVLFNHGETPFQVRRGDRVAQLILERIATPEVVEV 126
Query: 202 ENLDSTVRGEGGFGSTGV 219
E+LD T RG GG+GSTGV
Sbjct: 127 ESLDETTRGTGGYGSTGV 144
>pdb|3ECY|A Chain A, Crystal Structural Analysis Of Drosophila Melanogaster
Dutpase
pdb|3ECY|B Chain B, Crystal Structural Analysis Of Drosophila Melanogaster
Dutpase
Length = 160
Score = 179 bits (455), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 88/140 (62%), Positives = 107/140 (76%)
Query: 80 SLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIA 139
+LR KL+E A+ P RGS AAG DL SA + VPARGKA+V TDL + +PEG+Y R+A
Sbjct: 20 CVLRFAKLTENALEPVRGSAKAAGVDLRSAYDVVVPARGKAIVKTDLQVQVPEGSYGRVA 79
Query: 140 PRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVL 199
PRSGLA K+ +DVGAGV+D DYRG +GV+LFNHSDVDF VK GDRIAQ I E+I P ++
Sbjct: 80 PRSGLAVKNFIDVGAGVVDEDYRGNLGVVLFNHSDVDFEVKHGDRIAQFICERIFYPQLV 139
Query: 200 EVENLDSTVRGEGGFGSTGV 219
V+ L+ T RGE GFGSTGV
Sbjct: 140 MVDKLEDTERGEAGFGSTGV 159
>pdb|2HQU|A Chain A, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|2HQU|B Chain B, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|2HQU|C Chain C, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|3EHW|A Chain A, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|B Chain B, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|C Chain C, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|X Chain X, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|Y Chain Y, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|Z Chain Z, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3ARA|A Chain A, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARA|B Chain B, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARA|C Chain C, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARN|A Chain A, Human Dutpase In Complex With Novel Uracil Derivative
pdb|3ARN|B Chain B, Human Dutpase In Complex With Novel Uracil Derivative
pdb|3ARN|C Chain C, Human Dutpase In Complex With Novel Uracil Derivative
Length = 164
Score = 170 bits (430), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 86/140 (61%), Positives = 99/140 (70%)
Query: 79 GSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARI 138
G LR +LSE A P RGS AAGYDL SA + +P KA+V TD+ IA+P G Y R+
Sbjct: 23 GMQLRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRV 82
Query: 139 APRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDV 198
APRSGLA KH +DVGAGVID DYRG VGV+LFN F VK GDRIAQLI E+I P++
Sbjct: 83 APRSGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEI 142
Query: 199 LEVENLDSTVRGEGGFGSTG 218
EV+ LD T RG GGFGSTG
Sbjct: 143 EEVQALDDTERGSGGFGSTG 162
>pdb|1Q5H|A Chain A, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5H|B Chain B, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5H|C Chain C, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5U|X Chain X, Human Dutp Pyrophosphatase
pdb|1Q5U|Y Chain Y, Human Dutp Pyrophosphatase
pdb|1Q5U|Z Chain Z, Human Dutp Pyrophosphatase
Length = 147
Score = 169 bits (429), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 98/137 (71%)
Query: 82 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPR 141
LR +LSE A P RGS AAGYDL SA + +P KA+V TD+ IA+P G Y R+APR
Sbjct: 9 LRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPR 68
Query: 142 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEV 201
SGLA KH +DVGAGVID DYRG VGV+LFN F VK GDRIAQLI E+I P++ EV
Sbjct: 69 SGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEV 128
Query: 202 ENLDSTVRGEGGFGSTG 218
+ LD T RG GGFGSTG
Sbjct: 129 QALDDTERGSGGFGSTG 145
>pdb|3C3I|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|B Chain B, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|C Chain C, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|D Chain D, Evolution Of Chlorella Virus Dutpase
Length = 141
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/140 (60%), Positives = 105/140 (75%)
Query: 80 SLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIA 139
S L VKKL E A P RGS AAGYD+SS + VPA G+ V T +SI +P+GTY RIA
Sbjct: 2 SSLLVKKLVESATTPMRGSEGAAGYDISSVEDVVVPAMGRIAVSTGISIRVPDGTYGRIA 61
Query: 140 PRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVL 199
PRSGLA+K+ +DV AGVID+DYRG V VIL+N ++ D+++K GDRIAQLI+E+IVTP V
Sbjct: 62 PRSGLAYKYGIDVLAGVIDSDYRGEVKVILYNTTERDYIIKKGDRIAQLILEQIVTPGVA 121
Query: 200 EVENLDSTVRGEGGFGSTGV 219
V +L T RG GGFGSTG+
Sbjct: 122 VVLDLSDTARGSGGFGSTGI 141
>pdb|3CA9|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3CA9|B Chain B, Evolution Of Chlorella Virus Dutpase
Length = 165
Score = 166 bits (420), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 109/151 (72%), Gaps = 1/151 (0%)
Query: 69 HQNGVENDNIGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSI 128
Q G ++ + SLL VKKL E A P RGS AAGYD+SS + VPA G+ V T +SI
Sbjct: 8 QQMGRGSEFMSSLL-VKKLVESATTPMRGSEGAAGYDISSVEDVVVPAMGRIAVSTGISI 66
Query: 129 AIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQL 188
+P+GTY RIAPRSGLA+K+ +DV AGVID DY G V VIL+N ++ D+++K GDRIAQL
Sbjct: 67 RVPDGTYGRIAPRSGLAYKYGIDVLAGVIDEDYTGEVKVILYNTTERDYIIKKGDRIAQL 126
Query: 189 IIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 219
I+E+IVTP V V +L T RG GGFGSTG+
Sbjct: 127 ILEQIVTPGVAVVLDLSDTARGSGGFGSTGI 157
>pdb|3C2T|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3C2T|B Chain B, Evolution Of Chlorella Virus Dutpase
Length = 141
Score = 164 bits (415), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/140 (60%), Positives = 103/140 (73%)
Query: 80 SLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIA 139
S L VKKL E A P RGS AAGYD+SS + VPA G+ V T +SI +P+GTY RIA
Sbjct: 2 SSLLVKKLVESATTPMRGSEGAAGYDISSVEDVVVPAMGRIAVSTGISIRVPDGTYGRIA 61
Query: 140 PRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVL 199
PRSGLA+K+ +DV AGVID DY G V VIL+N ++ D+++K GDRIAQLI+E+IVTP V
Sbjct: 62 PRSGLAYKYGIDVLAGVIDEDYTGEVKVILYNTTERDYIIKKGDRIAQLILEQIVTPGVA 121
Query: 200 EVENLDSTVRGEGGFGSTGV 219
V +L T RG GGFGSTG+
Sbjct: 122 VVLDLSDTARGSGGFGSTGI 141
>pdb|3P48|A Chain A, Structure Of The Yeast Dutpase Dut1 In Complex With
Dumpnpp
pdb|3P48|B Chain B, Structure Of The Yeast Dutpase Dut1 In Complex With
Dumpnpp
pdb|3P48|C Chain C, Structure Of The Yeast Dutpase Dut1 In Complex With
Dumpnpp
Length = 147
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
Query: 81 LLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAP 140
+L+++ S A +P +GS AAGYD+ ++ + +PA G+ +V TD+S +P GTY RIAP
Sbjct: 8 VLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAP 67
Query: 141 RSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIV-TPDVL 199
RSGLA K+ + GAGV+D DY G V V+LFNHS DF +K GDR+AQLI+EKIV ++
Sbjct: 68 RSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIV 127
Query: 200 EVENLDSTVRGEGGFGSTG 218
V++L+ + RG GGFGSTG
Sbjct: 128 VVDSLEESARGAGGFGSTG 146
>pdb|3F4F|A Chain A, Crystal Structure Of Dut1p, A Dutpase From Saccharomyces
Cerevisiae
pdb|3F4F|B Chain B, Crystal Structure Of Dut1p, A Dutpase From Saccharomyces
Cerevisiae
pdb|3F4F|C Chain C, Crystal Structure Of Dut1p, A Dutpase From Saccharomyces
Cerevisiae
pdb|3HHQ|A Chain A, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|B Chain B, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|C Chain C, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|D Chain D, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|E Chain E, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|F Chain F, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|G Chain G, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|H Chain H, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|I Chain I, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|J Chain J, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|K Chain K, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|L Chain L, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|M Chain M, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|N Chain N, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|O Chain O, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|P Chain P, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|Q Chain Q, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|R Chain R, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|S Chain S, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|T Chain T, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|U Chain U, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|V Chain V, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|W Chain W, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|X Chain X, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
Length = 167
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 100/139 (71%), Gaps = 1/139 (0%)
Query: 81 LLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAP 140
+L+++ S A +P +GS AAGYD+ ++ + +PA G+ +V TD+S +P GTY RIAP
Sbjct: 28 VLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAP 87
Query: 141 RSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIV-TPDVL 199
RSGLA K+ + GAGV+D DY G V V+LFNHS DF +K GDR+AQLI+EKIV ++
Sbjct: 88 RSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIV 147
Query: 200 EVENLDSTVRGEGGFGSTG 218
V++L+ + RG GGFGSTG
Sbjct: 148 VVDSLEESARGAGGFGSTG 166
>pdb|2OKD|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKD|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKD|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
Length = 147
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/145 (52%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 75 NDNIGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGT 134
N NI S +R K + +A P R SP AAGYDL SA + +P + L+ TD+S+++P+
Sbjct: 3 NMNINSPVRFVKETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFC 62
Query: 135 YARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIV 194
Y RIAPRSGL+ K +D+G GVID DYRG +GVIL N+ F V GDRIAQLI ++I
Sbjct: 63 YGRIAPRSGLSLK-GIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIY 121
Query: 195 TPDVLEVENLDSTVRGEGGFGSTGV 219
P++ EV++LDST RG+ GFGSTG+
Sbjct: 122 YPELEEVQSLDSTNRGDQGFGSTGL 146
>pdb|3LQW|A Chain A, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Entamoeba Histolytica
Length = 163
Score = 144 bits (363), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 93/138 (67%)
Query: 81 LLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAP 140
+L VKKL E A++P RGS AAG DL S + + LV T +S+ IP Y RIAP
Sbjct: 25 VLLVKKLVEDAIVPTRGSKCAAGIDLYSNTNFIIQPHERFLVSTGVSVQIPHQCYGRIAP 84
Query: 141 RSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLE 200
RS LA K+ +DVGAGVID DYRG + VILFNHS+ F + GDRIAQLIIE+I + E
Sbjct: 85 RSSLALKYGIDVGAGVIDEDYRGEIKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISE 144
Query: 201 VENLDSTVRGEGGFGSTG 218
V+ L++T RG GFGSTG
Sbjct: 145 VKELNTTDRGTNGFGSTG 162
>pdb|2OKB|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKB|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKB|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
Length = 137
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 95/134 (70%), Gaps = 1/134 (0%)
Query: 86 KLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLA 145
K + +A P R SP AAGYDL SA + +P + L+ TD+S+++P+ Y RIAPRSGL+
Sbjct: 4 KETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSGLS 63
Query: 146 WKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLD 205
K +D+G GVID DYRG +GVIL N+ F V GDRIAQLI ++I P++ EV++LD
Sbjct: 64 LK-GIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSLD 122
Query: 206 STVRGEGGFGSTGV 219
ST RG+ GFGSTG+
Sbjct: 123 STNRGDQGFGSTGL 136
>pdb|3MBQ|A Chain A, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Orthorhombic Crystal Form
pdb|3MBQ|B Chain B, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Orthorhombic Crystal Form
pdb|3MBQ|C Chain C, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Orthorhombic Crystal Form
pdb|3MDX|A Chain A, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Rhombohedral Crystal Form
Length = 178
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 79/134 (58%), Gaps = 8/134 (5%)
Query: 93 LPKRGSPLAAGYDLSSA-AETK----VPARGKALVPTDLSIAIPEGTYARIAPRSGLAWK 147
LP + +AG DL +A AE + +P R + LVPT L + IP+G +I PRSGLA+K
Sbjct: 45 LPAYETAGSAGMDLRAAVAEDRQIVLLPGR-RTLVPTGLILEIPQGYEVQIRPRSGLAFK 103
Query: 148 HSMDV--GAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLD 205
+ + G ID+DYRG V V+L N D DF ++ G RIAQ + ++ P + E +
Sbjct: 104 NGITCLNTPGTIDSDYRGEVKVLLINLGDDDFRIERGMRIAQAVFAPVIQPKIEERAKIS 163
Query: 206 STVRGEGGFGSTGV 219
T RG GGFGSTG
Sbjct: 164 ETARGAGGFGSTGT 177
>pdb|3ZEZ|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism.
pdb|3ZF2|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 90/166 (54%), Gaps = 28/166 (16%)
Query: 82 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPR 141
L+VK LS+ A +P+R AGYD+ SA + + KA++ TD++++IPEG + R
Sbjct: 42 LQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 101
Query: 142 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD------------------------- 176
SG++ K + + G IDA Y G +G+ + N + D
Sbjct: 102 SGVSSKTHLVIETGKIDAGYHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKL 161
Query: 177 --FVVKVGDRIAQLIIEKIVTPDVLEVENLDS-TVRGEGGFGSTGV 219
+ ++ G+RIAQL+I I TP++ +VE +S + RGE GFGS+GV
Sbjct: 162 GSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|3ZF5|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 28/166 (16%)
Query: 82 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPR 141
L+VK LS+ A +P+R AGYD+ SA + + KA++ TD++++IPEG + R
Sbjct: 42 LQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 101
Query: 142 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD------------------------- 176
SG++ K + + G IDA + G +G+ + N + D
Sbjct: 102 SGVSSKTHLVIETGKIDAGFHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKL 161
Query: 177 --FVVKVGDRIAQLIIEKIVTPDVLEVENLDS-TVRGEGGFGSTGV 219
+ ++ G+RIAQL+I I TP++ +VE +S + RGE GFGS+GV
Sbjct: 162 GSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|3ZF1|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 90.1 bits (222), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 90/166 (54%), Gaps = 28/166 (16%)
Query: 82 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPR 141
L+VK LS+ A +P+R AGYD+ SA + + KA++ TD++++IPEG + R
Sbjct: 42 LQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 101
Query: 142 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD------------------------- 176
SG++ K + + G I+A Y G +G+ + N + D
Sbjct: 102 SGVSSKTHLVIETGKINAGYHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKL 161
Query: 177 --FVVKVGDRIAQLIIEKIVTPDVLEVENLDS-TVRGEGGFGSTGV 219
+ ++ G+RIAQL+I I TP++ +VE +S + RGE GFGS+GV
Sbjct: 162 GSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|3ZF0|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 28/166 (16%)
Query: 82 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPR 141
L+VK LS+ A +P+R AGYD+ SA + + KA++ TD++++IPEG + R
Sbjct: 42 LQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 101
Query: 142 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD------------------------- 176
SG++ K + + G I A Y G +G+ + N + D
Sbjct: 102 SGVSSKTHLVIETGKIAAGYHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKL 161
Query: 177 --FVVKVGDRIAQLIIEKIVTPDVLEVENLDS-TVRGEGGFGSTGV 219
+ ++ G+RIAQL+I I TP++ +VE +S + RGE GFGS+GV
Sbjct: 162 GSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|3ZF6|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 88/166 (53%), Gaps = 28/166 (16%)
Query: 82 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPR 141
L+VK LS+ A +P+R AGYD+ SA + + KA++ TD++++IPEG + R
Sbjct: 42 LQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 101
Query: 142 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD------------------------- 176
SG++ K + + G I A Y G +G+ + N + D
Sbjct: 102 SGVSSKTHLVIETGKIAAGYHGNLGINIKNDHEDDKMQTIFLRNICNEKIFEKERHLYKL 161
Query: 177 --FVVKVGDRIAQLIIEKIVTPDVLEVENLDS-TVRGEGGFGSTGV 219
+ ++ G+RIAQL+I I TP++ +VE +S + RGE GFGS GV
Sbjct: 162 GSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSCGV 207
>pdb|3ZF3|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 28/166 (16%)
Query: 82 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPR 141
L+VK LS+ A +P+R AGYD+ SA + + KA++ TD++++IPEG + R
Sbjct: 42 LQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 101
Query: 142 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD------------------------- 176
SG++ K + + G IDA G +G+ + N + D
Sbjct: 102 SGVSSKTHLVIETGKIDAGIHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKL 161
Query: 177 --FVVKVGDRIAQLIIEKIVTPDVLEVENLDS-TVRGEGGFGSTGV 219
+ ++ G+RIAQL+I I TP++ +VE +S + RGE GFGS+GV
Sbjct: 162 GSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|3ZF4|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 89/166 (53%), Gaps = 28/166 (16%)
Query: 82 LRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPR 141
L+VK LS+ A +P+R AGYD+ SA + + KA++ TD++++IPEG + R
Sbjct: 42 LQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSR 101
Query: 142 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD------------------------- 176
SG++ K + + G IDA G +G+ + N + D
Sbjct: 102 SGVSSKTHLVIETGKIDAGAHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHLYKL 161
Query: 177 --FVVKVGDRIAQLIIEKIVTPDVLEVENLDS-TVRGEGGFGSTGV 219
+ ++ G+RIAQL+I I TP++ +VE +S + RGE GFGS+GV
Sbjct: 162 GSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|4GK6|A Chain A, X-Ray Crystal Structure Of A Hypothetical Deoxyuridine
5-Triphosphate Nucleotidohydrolase From Mycobacterium
Abscessus
Length = 138
Score = 85.1 bits (209), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 77/130 (59%), Gaps = 3/130 (2%)
Query: 79 GSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARI 138
GS+L + +L + LP R AG DL SA + + + LV T +++AIP G +
Sbjct: 3 GSMLAIVRLDRELPLPSRAHADDAGVDLYSAEDVVIEPGRRTLVGTGIAVAIPSGMVGLV 62
Query: 139 APRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFVVKVGDRIAQLIIEKIVT 195
PRSGLA + + + G IDA YRG V V L N S+V V+ GDRIAQL+++++
Sbjct: 63 HPRSGLAARVGLSIVNSPGTIDAGYRGEVKVNLINLDSEVPIVIARGDRIAQLLVQQVEL 122
Query: 196 PDVLEVENLD 205
P+++EV++ D
Sbjct: 123 PELVEVDSFD 132
>pdb|3TQZ|A Chain A, Structure Of A Deoxyuridine 5'-Triphosphate
Nucleotidohydrolase (Dut) From Coxiella Burnetii
Length = 155
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 85 KKLSEKAVLPKRGSPLAAGYDLSSAAET--KVPARGKALVPTDLSIAIPEGTYA-RIAPR 141
K+L + LP + +AG DL + + K+ L+ T L+I + A I PR
Sbjct: 15 KRLGSEFPLPAYATTGSAGLDLRACLDEPLKIEPDETCLISTGLAIYLGHSNVAATILPR 74
Query: 142 SGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVL 199
SGL KH + +G G+ID+DY+GP+ V +N + + GDRIAQL++ I+
Sbjct: 75 SGLGHKHGIVLGNLVGLIDSDYQGPLXVSCWNRGKEPYTINPGDRIAQLVVLPILKAQFA 134
Query: 200 EVENLDSTVRGEGGFGSTG 218
VE + T RG GGFGS+G
Sbjct: 135 VVEEFELTERGAGGFGSSG 153
>pdb|1EUW|A Chain A, Atomic Resolution Structure Of E. Coli Dutpase
Length = 152
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 5/131 (3%)
Query: 93 LPKRGSPLAAGYDLSSAAETKVP-ARGKA-LVPTDLSIAIPEGTYARIA-PRSGLAWKHS 149
LP + +AG DL + V A G LVPT L+I I + + A + PRSGL KH
Sbjct: 20 LPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHG 79
Query: 150 MDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDST 207
+ +G G+ID+DY+G + + ++N F ++ G+RIAQ+I +V + VE+ D+T
Sbjct: 80 IVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDAT 139
Query: 208 VRGEGGFGSTG 218
RGEGGFG +G
Sbjct: 140 DRGEGGFGHSG 150
>pdb|1DUP|A Chain A, Deoxyuridine 5'-Triphosphate Nucleotido Hydrolase
(D-Utpase)
pdb|1EU5|A Chain A, Structure Of E. Coli Dutpase At 1.45 A
pdb|1RN8|A Chain A, Crystal Structure Of Dutpase Complexed With Substrate
Analogue Imido-Dutp
pdb|1SEH|A Chain A, Crystal Structure Of E. Coli Dutpase Complexed With The
Product Dump
pdb|1DUD|A Chain A, Deoxyuridine 5'-triphosphate Nucleotide Hydrolase
(d-utpase) Complexed With The Substrate Analogue
Deoxyuridine 5'-diphosphate (d-udp)
pdb|2HR6|A Chain A, Crystal Structure Of Dutpase In Complex With Substrate
Analogue Dudp And Manganese
pdb|2HRM|A Chain A, Crystal Structure Of Dutpase Complexed With Substrate
Analogue Methylene-Dutp
Length = 152
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 93 LPKRGSPLAAGYDLSSAAETKVPAR--GKALVPTDLSIAIPEGTYARIA-PRSGLAWKHS 149
LP + +AG DL + V LVPT L+I I + + A + PRSGL KH
Sbjct: 20 LPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHG 79
Query: 150 MDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDST 207
+ +G G+ID+DY+G + + ++N F ++ G+RIAQ+I +V + VE+ D+T
Sbjct: 80 IVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDAT 139
Query: 208 VRGEGGFGSTG 218
RGEGGFG +G
Sbjct: 140 DRGEGGFGHSG 150
>pdb|1RNJ|A Chain A, Crystal Structure Of Inactive Mutant Dutpase Complexed
With Substrate Analogue Imido-Dutp
pdb|1SYL|A Chain A, Crystal Structure Of Inactive Mutant Dutpase Complexed
With Substrate Dutp
Length = 152
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 75/131 (57%), Gaps = 5/131 (3%)
Query: 93 LPKRGSPLAAGYDLSSAAETKVPAR--GKALVPTDLSIAIPEGTYARIA-PRSGLAWKHS 149
LP + +AG DL + V LVPT L+I I + + A + PRSGL KH
Sbjct: 20 LPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHG 79
Query: 150 MDVG--AGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDST 207
+ +G G+I++DY+G + + ++N F ++ G+RIAQ+I +V + VE+ D+T
Sbjct: 80 IVLGNLVGLINSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDAT 139
Query: 208 VRGEGGFGSTG 218
RGEGGFG +G
Sbjct: 140 DRGEGGFGHSG 150
>pdb|3LOJ|A Chain A, Structure Of Mycobacterium Tuberculosis Dutpase H145a
Mutant
Length = 174
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 77 NIGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYA 136
++ + L + +L LP R AG DL SA + ++ +ALV T +++A+P G
Sbjct: 20 HMSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVG 79
Query: 137 RIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFVVKVGDRIAQLIIEKI 193
+ PRSGLA + + + G IDA YRG + V L N VV GDRIAQL+++++
Sbjct: 80 LVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRV 139
Query: 194 VTPDVLEVENLDSTVRGEGGFGST 217
+++EV + D E G ST
Sbjct: 140 ELVELVEVSSFD-----EAGLAST 158
>pdb|3HZA|A Chain A, Crystal Structure Of Dutpase H145w Mutant
Length = 174
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 77 NIGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYA 136
++ + L + +L LP R AG DL SA + ++ +ALV T +++A+P G
Sbjct: 20 HMSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVG 79
Query: 137 RIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFVVKVGDRIAQLIIEKI 193
+ PRSGLA + + + G IDA YRG + V L N VV GDRIAQL+++++
Sbjct: 80 LVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRV 139
Query: 194 VTPDVLEVENLDSTVRGEGGFGST 217
+++EV + D E G ST
Sbjct: 140 ELVELVEVSSFD-----EAGLAST 158
>pdb|1SIX|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SLH|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SLH|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SLH|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SM8|A Chain A, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SM8|B Chain B, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SM8|C Chain C, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SMC|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SMC|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SMC|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SNF|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|1SNF|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|1SNF|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|2PY4|A Chain A, Full Length Structure Of The Mycobacterium Tuberculosis
Dutpase Complexed With Magnesium And
Alpha,Beta-Imido-Dutp
Length = 174
Score = 73.2 bits (178), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 77 NIGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYA 136
++ + L + +L LP R AG DL SA + ++ +ALV T +++A+P G
Sbjct: 20 HMSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVG 79
Query: 137 RIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFVVKVGDRIAQLIIEKI 193
+ PRSGLA + + + G IDA YRG + V L N VV GDRIAQL+++++
Sbjct: 80 LVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRV 139
Query: 194 VTPDVLEVENLDSTVRGEGGFGST 217
+++EV + D E G ST
Sbjct: 140 ELVELVEVSSFD-----EAGLAST 158
>pdb|3I93|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dutpase
Stop138t Mutant
Length = 158
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 77 NIGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYA 136
++ + L + +L LP R AG DL SA + ++ +ALV T +++A+P G
Sbjct: 20 HMSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVG 79
Query: 137 RIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFVVKVGDRIAQLIIEKI 193
+ PRSGLA + + + G IDA YRG + V L N VV GDRIAQL+++++
Sbjct: 80 LVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRV 139
Query: 194 VTPDVLEVENLDSTVRGEGGFGST 217
+++EV + D E G ST
Sbjct: 140 ELVELVEVSSFD-----EAGLAST 158
>pdb|1SJN|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SJN|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SJN|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
Length = 170
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 8/143 (5%)
Query: 78 IGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYAR 137
+ + L + +L LP R AG DL SA + ++ +ALV T +++A+P G
Sbjct: 1 MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGL 60
Query: 138 IAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFVVKVGDRIAQLIIEKIV 194
+ PRSGLA + + + G IDA YRG + V L N VV GDRIAQL+++++
Sbjct: 61 VHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVE 120
Query: 195 TPDVLEVENLDSTVRGEGGFGST 217
+++EV + D E G ST
Sbjct: 121 LVELVEVSSFD-----EAGLAST 138
>pdb|1MQ7|A Chain A, Crystal Structure Of Dutpase From Mycobacterium
Tuberculosis (rv2697c)
Length = 154
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 8/143 (5%)
Query: 78 IGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYAR 137
+ + L + +L LP R AG DL SA + ++ +ALV T +++A+P G
Sbjct: 1 MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGL 60
Query: 138 IAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFVVKVGDRIAQLIIEKIV 194
+ PRSGLA + + + G IDA YRG + V L N VV GDRIAQL+++++
Sbjct: 61 VHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVE 120
Query: 195 TPDVLEVENLDSTVRGEGGFGST 217
+++EV + D E G ST
Sbjct: 121 LVELVEVSSFD-----EAGLAST 138
>pdb|3H6D|A Chain A, Structure Of The Mycobacterium Tuberculosis Dutpase D28n
Mutant
Length = 174
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 77 NIGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYA 136
++ + L + +L LP R AG +L SA + ++ +ALV T +++A+P G
Sbjct: 20 HMSTTLAIVRLDPGLPLPSRAHDGDAGVNLYSAEDVELAPGRRALVRTGVAVAVPFGMVG 79
Query: 137 RIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFVVKVGDRIAQLIIEKI 193
+ PRSGLA + + + G IDA YRG + V L N VV GDRIAQL+++++
Sbjct: 80 LVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRV 139
Query: 194 VTPDVLEVENLDSTVRGEGGFGST 217
+++EV + D E G ST
Sbjct: 140 ELVELVEVSSFD-----EAGLAST 158
>pdb|1DUT|A Chain A, Fiv Dutp Pyrophosphatase
pdb|1DUT|B Chain B, Fiv Dutp Pyrophosphatase
Length = 133
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 91 AVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSM 150
+L KR AGYDL +A E + ++PT + + +P+G + I +S + K +
Sbjct: 7 GILDKRSED--AGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSK-GL 63
Query: 151 DVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVEN--LDSTV 208
DV GVID YRG +GVI+ N S + +IAQLII +VLE +DS
Sbjct: 64 DVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILP-CKHEVLEQGKVVMDSE- 121
Query: 209 RGEGGFGSTGV 219
RG+ G+GSTGV
Sbjct: 122 RGDNGYGSTGV 132
>pdb|1F7D|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
pdb|1F7D|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
pdb|1F7K|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7K|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7N|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7N|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7R|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
Length = 136
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 91 AVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSM 150
+L KR AGYDL +A E + ++PT + + +P+G + I +S + K +
Sbjct: 7 GILDKRSED--AGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSK-GL 63
Query: 151 DVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVEN--LDSTV 208
DV GVID YRG +GVI+ N S + +IAQLII +VLE +DS
Sbjct: 64 DVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILP-CKHEVLEQGKVVMDSE- 121
Query: 209 RGEGGFGSTGV 219
RG+ G+GSTGV
Sbjct: 122 RGDNGYGSTGV 132
>pdb|1DUC|A Chain A, Eiav Dutpase DudpSTRONTIUM COMPLEX
pdb|1DUN|A Chain A, Eiav Dutpase Native
Length = 134
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 102 AGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGAGVIDADY 161
AG+DL + +P ++PTD+ I +P ++ + +S +A K + + G+ID Y
Sbjct: 17 AGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMA-KQGLLINGGIIDEGY 75
Query: 162 RGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGFGSTGV 219
G + VI N + + G + AQLII + + + + RG+ GFGSTGV
Sbjct: 76 TGEIQVICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDKGFGSTGV 133
>pdb|2XCD|A Chain A, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|B Chain B, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|C Chain C, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|D Chain D, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|E Chain E, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|F Chain F, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCE|A Chain A, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|B Chain B, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|C Chain C, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|D Chain D, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|E Chain E, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|F Chain F, Structure Of Yncf In Complex With Dupnhpp
Length = 144
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 19/148 (12%)
Query: 82 LRVKKLSEKAVLPKRGSPLAAG--YDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIA 139
+++K L E R S + G DL +A + + LVP +++ +PEG A +
Sbjct: 5 IKIKYLDETQT---RISKIEQGDWIDLRAAEDVTIKKDEFKLVPLGVAMELPEGYEAHVV 61
Query: 140 PRS------GLAWKHSMDVGAGVIDADYRGPVGVILF-NHSDVDFVVKVGDRIAQL-IIE 191
PRS G+ +SM GVID Y+G F ++ D +K GDRI Q I++
Sbjct: 62 PRSSTYKNFGVIQTNSM----GVIDESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMK 117
Query: 192 KIVTPDVLEVENLDSTVRGEGGFGSTGV 219
K+ +++EVE+L + R GG GSTG
Sbjct: 118 KMPAVELVEVEHLGNEDR--GGLGSTGT 143
>pdb|2D4N|A Chain A, Crystal Structure Of M-Pmv Dutpase Complexed With Dupnpp,
Substrate Analogue
pdb|3TPW|A Chain A, Crystal Structure Of M-Pmv Dutpase - Dupnpp Complex
Revealing Distorted Ligand Geometry (Approach
Intermediate)
pdb|3TPN|A Chain A, Crystal Structure Of M-Pmv Dutpase Complexed With Dupnpp,
Substrate
pdb|3TPY|A Chain A, Crystal Structure Of M-Pmv Dutpase With A Mixed Population
Of Substrate (Dupnpp) And Post-Inversion Product (Dump)
In The Active Sites
pdb|3TQ3|A Chain A, Crystal Structure Of M-Pmv Dutpase With A Mixed Population
Of Substrate (Dupnpp) And Post-Inversion Product (Dump)
In The Active Sites
pdb|3TQ4|A Chain A, Crystal Structure Of M-Pmv Dutpase With A Mixed Population
Of Substrate (Dupnpp) And Post-Inversion Product (Dump)
In The Active Sites
pdb|3TQ5|A Chain A, Crystal Structure Of M-Pmv Dutpase Post-Inversion Product
(Dump) Complex
pdb|3TRL|A Chain A, Crystal Structure Of M-Pmv Dutpase Post-Inversion Product
(Dump) Complex
pdb|3TSL|A Chain A, Crystal Structure Of M-Pmv Dutpase Relaxed End-Product
(Dump) Complex
pdb|3TTA|A Chain A, Crystal Structure Of M-Pmv Dutpase Relaxed End-Product
(Dump) Complex
Length = 152
Score = 56.6 bits (135), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 96 RGSPLAAGYDLSSAAETKV-PARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGA 154
R +P +AG DL S + T + P G + T + +P T+ I RS + K + V
Sbjct: 33 RATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMK-GLQVYP 91
Query: 155 GVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGF 214
GVID DY G + ++ +++ V G+RIAQLI+ ++ D + RG+G F
Sbjct: 92 GVIDNDYTGEIKIMAKAVNNI-VTVSQGNRIAQLILLPLIETD----NKVQQPYRGQGSF 146
Query: 215 GSTGV 219
GS+ +
Sbjct: 147 GSSDI 151
>pdb|2D4L|A Chain A, Crystal Structure Of Truncated In C-Terminal M-Pmv Dutpase
pdb|2D4M|A Chain A, Crystal Structure Of Apo M-Pmv Dutpase
pdb|3TP1|A Chain A, Crystal Structure Of The Precatalytic M-Pmv Dutpase -
Substrate (Dupnpp) Complex
pdb|3TPS|A Chain A, Crystal Structure Of M-Pmv Dutpase Complexed With Dupnpp
Substrate
pdb|3TRN|A Chain A, Crystal Structure Of M-Pmv Dutpase Post-Inversion Product
(Dump) Complex
pdb|3TS6|A Chain A, Crystal Structure Of M-Pmv Dutpase Relaxed End-Product
(Dump) Complex
Length = 152
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 96 RGSPLAAGYDLSSAAETKV-PARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHSMDVGA 154
R +P +AG DL S + T + P G + T + +P T+ I RS + K + V
Sbjct: 33 RATPGSAGLDLXSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMK-GLQVYP 91
Query: 155 GVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLEVENLDSTVRGEGGF 214
GVID DY G + ++ +++ V G+RIAQLI+ ++ D + RG+G F
Sbjct: 92 GVIDNDYTGEIKIMAKAVNNI-VTVSQGNRIAQLILLPLIETD----NKVQQPYRGQGSF 146
Query: 215 GSTGV 219
GS+ +
Sbjct: 147 GSSDI 151
>pdb|2BAZ|A Chain A, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2BAZ|B Chain B, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2BAZ|C Chain C, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2XX6|A Chain A, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|B Chain B, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|C Chain C, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|D Chain D, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XY3|A Chain A, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|B Chain B, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|C Chain C, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|D Chain D, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|E Chain E, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|F Chain F, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2Y1T|A Chain A, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|B Chain B, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|C Chain C, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|D Chain D, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|E Chain E, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|F Chain F, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
Length = 142
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 14/123 (11%)
Query: 105 DLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRS------GLAWKHSMDVGAGVID 158
DL +A + + LVP +++ +PEG A + PRS G+ +SM GVID
Sbjct: 25 DLRAAEDVAIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSM----GVID 80
Query: 159 ADYRGPVGVILF-NHSDVDFVVKVGDRIAQL-IIEKIVTPDVLEVENLDSTVRGEGGFGS 216
Y+G F ++ D +K GDRI Q I++K+ D++EV+ L + R GG GS
Sbjct: 81 ESYKGDNDFWFFPAYALRDTKIKKGDRICQFRIMKKMPAVDLIEVDRLGNGDR--GGHGS 138
Query: 217 TGV 219
TG
Sbjct: 139 TGT 141
>pdb|3T64|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T64|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T64|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
Length = 181
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 155 GVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLE-VENLDSTVRGEGG 213
G+IDA YRG + L N SD ++ +K D++ QL + P E VE LD T RGEGG
Sbjct: 106 GLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQL-VSFTGEPLSFELVEELDETSRGEGG 164
Query: 214 FGST 217
FGST
Sbjct: 165 FGST 168
>pdb|3T60|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T60|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T60|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
Length = 181
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 155 GVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLE-VENLDSTVRGEGG 213
G+IDA YRG + L N SD ++ +K D++ QL + P E VE LD T RGEGG
Sbjct: 106 GLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQL-VSFTGEPLSFELVEELDETSRGEGG 164
Query: 214 FGST 217
FGST
Sbjct: 165 FGST 168
>pdb|1VYQ|A Chain A, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|1VYQ|B Chain B, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|1VYQ|C Chain C, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|2Y8C|A Chain A, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
pdb|2Y8C|B Chain B, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
pdb|2Y8C|C Chain C, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
Length = 173
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 155 GVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVTPDVLE-VENLDSTVRGEGG 213
G+IDA YRG + L N SD ++ +K D++ QL + P E VE LD T RGEGG
Sbjct: 106 GLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQL-VSFTGEPLSFELVEELDETSRGEGG 164
Query: 214 FGST 217
FGST
Sbjct: 165 FGST 168
>pdb|3H6X|A Chain A, Crystal Structure Of Dutpase From Streptococcus Mutans
pdb|3H6X|B Chain B, Crystal Structure Of Dutpase From Streptococcus Mutans
pdb|3H6X|C Chain C, Crystal Structure Of Dutpase From Streptococcus Mutans
Length = 148
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 84 VKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSG 143
+ +++ +LPKR + AAGYDL A T++ A LVPT + G + RS
Sbjct: 10 ITDYTDENLLPKRETAHAAGYDLKVAERTEISAGAIVLVPTGVKAYXQVGEVLYLFDRSS 69
Query: 144 LAWKHSMDV--GAGVIDADY------RGPVGVILFNHSDVDFVVKVGDRIAQLIIEKIVT 195
K + + GVID DY G + N +D V++ G+R+ Q +
Sbjct: 70 NPRKKGLVLINSVGVIDGDYYNNPNNEGHIFAQXKNXTDQTVVLEAGERVVQ----GVFX 125
Query: 196 PDVLEVENLDSTVRGEGGFGSTG 218
P +L ++ +T GGFGSTG
Sbjct: 126 PFLL-IDGDKATGTRTGGFGSTG 147
>pdb|3EZU|A Chain A, Crystal Structure Of Multidomain Protein Of Unknown
Function With Ggdef-Domain (Np_951600.1) From Geobacter
Sulfurreducens At 1.95 A Resolution
Length = 342
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Query: 133 GTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGDRIAQLIIEK 192
G+ A A RSG +VG +ID DY VG ++ + GDRI QL+ E
Sbjct: 201 GSLAYAAQRSG------SNVGIXLIDLDYFKLVGD--------NYGHQTGDRILQLVAET 246
Query: 193 IVT 195
I +
Sbjct: 247 ITS 249
>pdb|1S72|O Chain O, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|O Chain O, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|O Chain O, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|O Chain O, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|O Chain O, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|O Chain O, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|O Chain O, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|O Chain O, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|O Chain O, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|O Chain O, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|O Chain O, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|O Chain O, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|O Chain O, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|O Chain O, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|O Chain O, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|O Chain O, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|O Chain O, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|O Chain O, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|O Chain O, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|O Chain O, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTJ|O Chain O, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
pdb|2OTL|O Chain O, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|O Chain O, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|O Chain O, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|O Chain O, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|O Chain O, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|O Chain O, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|O Chain O, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|O Chain O, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|O Chain O, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|O Chain O, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|O Chain O, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|O Chain O, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|O Chain O, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|O Chain O, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|O Chain O, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CPW|N Chain N, The Structure Of The Antibiotic Linezolid Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CMA|O Chain O, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|O Chain O, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|O Chain O, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|O Chain O, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|O Chain O, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
pdb|4ADX|O Chain O, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 116
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 77 NIGSLLRVKKLSEKAVLPKR--GSPL------AAGYDLSSAAETKVPARGKALVPTDLSI 128
N+G + R + E V+P + GS + A D S AETK+ G+A+
Sbjct: 45 NLGRIERYAQEDETVVVPGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSLEQAIE 104
Query: 129 AIPEGTYARI 138
PEG++ R+
Sbjct: 105 NNPEGSHVRV 114
>pdb|1FFK|L Chain L, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
pdb|1JJ2|N Chain N, Fully Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution
pdb|1KQS|N Chain N, The Haloarcula Marismortui 50s Complexed With A
Pretranslocational Intermediate In Protein Synthesis
pdb|1K8A|P Chain P, Co-Crystal Structure Of Carbomycin A Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1K9M|P Chain P, Co-Crystal Structure Of Tylosin Bound To The 50s Ribosomal
Subunit Of Haloarcula Marismortui
pdb|1KD1|P Chain P, Co-crystal Structure Of Spiramycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M1K|P Chain P, Co-Crystal Structure Of Azithromycin Bound To The 50s
Ribosomal Subunit Of Haloarcula Marismortui
pdb|1M90|P Chain P, Co-Crystal Structure Of Cca-Phe-Caproic Acid-Biotin And
Sparsomycin Bound To The 50s Ribosomal Subunit
pdb|1K73|P Chain P, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|1KC8|P Chain P, Co-Crystal Structure Of Blasticidin S Bound To The 50s
Ribosomal Subunit
pdb|1N8R|P Chain P, Structure Of Large Ribosomal Subunit In Complex With
Virginiamycin M
pdb|1NJI|P Chain P, Structure Of Chloramphenicol Bound To The 50s Ribosomal
Subunit
pdb|1Q7Y|P Chain P, Crystal Structure Of Ccdap-puromycin Bound At The Peptidyl
Transferase Center Of The 50s Ribosomal Subunit
pdb|1Q81|P Chain P, Crystal Structure Of Minihelix With 3' Puromycin Bound To
A- Site Of The 50s Ribosomal Subunit.
pdb|1Q82|P Chain P, Crystal Structure Of Cc-Puromycin Bound To The A-Site Of
The 50s Ribosomal Subunit
pdb|1Q86|P Chain P, Crystal Structure Of Cca-Phe-Cap-Biotin Bound
Simultaneously At Half Occupancy To Both The A-Site And
P- Site Of The The 50s Ribosomal Subunit.
pdb|1QVF|N Chain N, Structure Of A Deacylated Trna Minihelix Bound To The E
Site Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1QVG|N Chain N, Structure Of Cca Oligonucleotide Bound To The Trna Binding
Sites Of The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1W2B|N Chain N, Trigger Factor Ribosome Binding Domain In Complex With 50s
pdb|3CXC|N Chain N, The Structure Of An Enhanced Oxazolidinone Inhibitor Bound
To The 50s Ribosomal Subunit Of H. Marismortui
pdb|3G4S|O Chain O, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|O Chain O, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|O Chain O, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
pdb|3OW2|N Chain N, Crystal Structure Of Enhanced Macrolide Bound To 50s
Ribosomal Subunit
Length = 115
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 77 NIGSLLRVKKLSEKAVLPKR--GSPL------AAGYDLSSAAETKVPARGKALVPTDLSI 128
N+G + R + E V+P + GS + A D S AETK+ G+A+
Sbjct: 44 NLGRIERYAQEDETVVVPGKVLGSGVLQKDVTVAAVDFSGTAETKIDQVGEAVSLEQAIE 103
Query: 129 AIPEGTYARI 138
PEG++ R+
Sbjct: 104 NNPEGSHVRV 113
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 67 KLHQNGVENDNIGSLLRVKKLSEKAVLPKRGSPLAAGYDLSSAAETKVPARGKALVP--T 124
KL Q+ V+ ++G L+ ++ +R + A D+ + T +P +
Sbjct: 715 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 774
Query: 125 DLSI-AIPEGTYARIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFVVKVGD 183
DLSI A P R+A ++ + SM V ++ RG G + + ++DV+ + K +
Sbjct: 775 DLSIIATPPAR--RLAVKTFVREYDSMVVREAILREILRG--GQVYYLYNDVENIQKAAE 830
Query: 184 RIAQLIIE 191
R+A+L+ E
Sbjct: 831 RLAELVPE 838
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,607,790
Number of Sequences: 62578
Number of extensions: 272587
Number of successful extensions: 645
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 52
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)