BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027767
         (219 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P36069|PMU1_YEAST Probable phosphomutase PMU1 OS=Saccharomyces cerevisiae (strain
           ATCC 204508 / S288c) GN=PMU1 PE=1 SV=1
          Length = 295

 Score = 47.4 bits (111), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 79/184 (42%), Gaps = 26/184 (14%)

Query: 14  EFFDAHLSPLGWQQVGNLRKRV---EASGLTQKIDLVITSPLLRTLQTAVGVFGGDGESQ 70
           E+ D+ L+PLG  QV      V    A  L     +  +SP+ R L+T +       ES 
Sbjct: 92  EWLDSKLTPLGKDQVRRTGSNVLLPMAKQLGMLPHVFFSSPMRRCLETFI-------ESW 144

Query: 71  TDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKR----RSISEYHSLFP----AI 122
           T  +     L A   ++      +E  RE LG H CDKR     ++ EY          +
Sbjct: 145 TPVLAETQELPAGTKISTR---IIEGLRETLGSHTCDKRVAHSMAVDEYQDFSTESGHTV 201

Query: 123 DFKLIES--EDDKLWKADAREPFEEVTARGMEFMKWLWTR---QEKEIAVVSHGIFLQQT 177
            ++ +    EDD+LW  D RE   E+  R +  +  L+ +   +EK I++  H   +Q  
Sbjct: 202 HWQYVPDYPEDDELWLPDHRETCAEMDKRTLNGLFELFNQLSSEEKFISLTCHSGVIQSV 261

Query: 178 LNAL 181
           L  L
Sbjct: 262 LRNL 265


>sp|Q09676|YA03_SCHPO Uncharacterized protein C5H10.03 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC5H10.03 PE=4 SV=1
          Length = 219

 Score = 42.0 bits (97), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 35/188 (18%)

Query: 4   NNGPEALLSQEFFDAHLSPLGWQQVGNLRKRVEASGLTQKIDLVITSPLLRTLQT---AV 60
           N GP+        D  L+  G +Q   L K +E+  +   ID ++ SP+ RTLQT   A+
Sbjct: 20  NVGPDE--DHNIRDPVLTSEGIEQCEALAKELESKQIP--IDGIVCSPMRRTLQTMEIAL 75

Query: 61  GVFGGDGESQTDGIDAHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFP 120
             +  +G     G D  P       V   P        + +G  PCD    + + + L+P
Sbjct: 76  KKYLAEG-----GPDKVP-------VYISPFF------QEVGHLPCDIGLELDKLNKLYP 117

Query: 121 AIDFKL----IESEDDKLWKADAREPFEEVTA-RGMEFMKWLWTRQEKEIAVVSHGIFLQ 175
             +F+     I  E   ++ +D       ++A R  E +++L    +++IAV++H  F++
Sbjct: 118 KYNFQSCQDGIYPEKRDIYASDVT-----ISAIRSKEALEYLAALPQQQIAVITHSAFIR 172

Query: 176 QTLNALLN 183
             L  ++ 
Sbjct: 173 FLLKKMVK 180


>sp|O94420|YQGD_SCHPO Probable phosphatase C1620.13 OS=Schizosaccharomyces pombe (strain
           972 / ATCC 24843) GN=SPCC1620.13 PE=3 SV=1
          Length = 282

 Score = 37.0 bits (84), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 61/172 (35%), Gaps = 30/172 (17%)

Query: 16  FDAHLSPLGWQQVGNLRKRVEASGLTQKIDLVITSPLLRTLQTAVGVFGGDGESQTDGID 75
            D+ L+  G+ Q   L K +        I  V +SP  R  +TA  +             
Sbjct: 77  IDSELTVHGYNQAKKLAKSIR----NLDIVCVYSSPQKRAKRTAEEI------------- 119

Query: 76  AHPSLTATATVNCPPIIAVELCRERLGVHPCDKRRSISEYHSLFPAIDFKLIESEDDKLW 135
                  T   NCP  I+  L  + LG       R  + Y    P +    +ES D  L 
Sbjct: 120 -------TKVANCPLYISDFLMEKDLGSLEGTSFRYTANYRPREPPMKVTNLESRDSLLT 172

Query: 136 KADAREPFEEVTARGMEFMKWLWTRQEKEIAVVSHGIFLQQTLNALLNDCQT 187
           +A          A G E          K I VVSHGIFL   L A+L   +T
Sbjct: 173 RARGFTDILFNEAIGFE------GESGKTIVVVSHGIFLPFLLRAILARART 218


>sp|O42905|RTI1_SCHPO DNA repair and recombination protein rti1 OS=Schizosaccharomyces
           pombe (strain 972 / ATCC 24843) GN=rti1 PE=1 SV=1
          Length = 371

 Score = 33.5 bits (75), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 50  SPLLRTLQTAVGVFGGDGESQTDGIDAHPSLTATATVNCPPI 91
           SP +   +  +  F GD +   D IDAH  +T    V  PP+
Sbjct: 268 SPRVEEFEELLNQFEGDEKVSVDKIDAHDKMTEAQVVKIPPV 309


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,083,507
Number of Sequences: 539616
Number of extensions: 3017079
Number of successful extensions: 7097
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 7092
Number of HSP's gapped (non-prelim): 8
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)