BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027768
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 189
Score = 130 bits (326), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 112/190 (58%), Gaps = 6/190 (3%)
Query: 5 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFT 64
+++++ VARGT ILA++ GNF + Q L K+P+ NNK TY+ + F+Y+ ++
Sbjct: 3 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 62
Query: 65 YCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDH 124
Y + + R +FL VK+ F Y G +A TA+ ++N EF S L +++ H
Sbjct: 63 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKH---H 118
Query: 125 PE--EISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTK 182
E + K+ + +AQV E+KG+M+ NI+ V RGE++ELL+DKTENL + F+
Sbjct: 119 SENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRN 178
Query: 183 MRRKMWIQNM 192
+ R M ++N+
Sbjct: 179 LARAMCMKNI 188
>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
pdb|4AFI|B Chain B, Complex Between Vamp7 Longin Domain And Fragment Of Delta-
Adaptin From Ap3
Length = 173
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 66/116 (56%), Gaps = 1/116 (0%)
Query: 5 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFT 64
+++++ VARGT ILA++ GNF + Q L K+P+ NNK TY+ + F+Y+ ++
Sbjct: 55 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 114
Query: 65 YCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQY 120
Y + + R +FL VK+ F Y G +A TA+ ++N EF S L +++
Sbjct: 115 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKH 169
>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|B Chain B, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|C Chain C, Vamp7 Longin Domain Hrb Peptide Complex
pdb|2VX8|D Chain D, Vamp7 Longin Domain Hrb Peptide Complex
Length = 169
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 5 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFT 64
+++++ VARGT ILA++ GNF + Q L K+P+ NNK TY+ + F+Y+ ++
Sbjct: 45 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 104
Query: 65 YCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQ 119
Y + + R +FL VK+ F Y G +A TA+ ++N EF S L ++
Sbjct: 105 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLK 158
>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin-
Like Protein 1
Length = 131
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 5 SLIYSFVARGTVILAEYTEFTGNFTSIASQCLQKLPATNNKFTYNCDGHTFNYLVENGFT 64
+++++ VARGT ILA++ GNF + Q L K+P+ NNK TY+ + F+Y+ ++
Sbjct: 9 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 68
Query: 65 YCVVAVESAGRQIPIAFLERVKEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDH 124
Y + + R FL +K+ F Y G +A TA ++N EF S L +++
Sbjct: 69 YLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTAPPYAMNSEFSSVLAAQLKHHSSG 127
Query: 125 PEE 127
P
Sbjct: 128 PSS 130
>pdb|2NUP|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|C Chain C, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 196
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 78/154 (50%), Gaps = 3/154 (1%)
Query: 28 FTSIASQCLQKL-PATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERVK 86
+ S A Q +KL + + T TF+Y++E G Y V+ + +++ A+LE +
Sbjct: 34 YQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLH 93
Query: 87 EDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMM 146
+F++++G + S EF + +++ + +D L + ++ +V+ +M+
Sbjct: 94 SEFDEQHGKKVPTVSRPYSF-IEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIMV 151
Query: 147 ENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQG 180
NIE+VL RGE + L K NL S ++ +RQ
Sbjct: 152 ANIEEVLQRGEALSALDSKANNLSSLSKKYRQDA 185
>pdb|2NPS|A Chain A, Crystal Structure Of The Early Endosomal Snare Complex
Length = 74
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMW 188
K+ V+ QV EV VM ENI KV++RGE+++ L DK+E+L A F + ++RR+MW
Sbjct: 8 DKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMW 67
>pdb|3B5N|A Chain A, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|E Chain E, Structure Of The Yeast Plasma Membrane Snare Complex
pdb|3B5N|I Chain I, Structure Of The Yeast Plasma Membrane Snare Complex
Length = 61
Score = 54.3 bits (129), Expect = 5e-08, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 41/60 (68%)
Query: 129 SKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMW 188
S+ A+++A++ + G+M +NI KV +RGE++ + DK +NL AQ F++ ++R+ MW
Sbjct: 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61
>pdb|3KYQ|A Chain A, Lipid-Induced Conformational Switch Controls Fusion
Activity Of Longin Domain Snare Ykt6
Length = 199
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 64/131 (48%), Gaps = 14/131 (10%)
Query: 57 YLVENGFTYCVVAVESAGRQIPIAFLERVKEDFNKR-----YGGGKAATAVANSLNKEFG 111
Y+ + V+A ++ LE+V ++F+K+ + G AT +L+
Sbjct: 70 YVRSDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYTALDGHLS 129
Query: 112 SKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRS 171
+P E ++KV+A++ E K ++ +E +L+RGEK++ LV K+E L +
Sbjct: 130 R---------YQNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGT 180
Query: 172 QAQDFRQQGTK 182
Q++ F + K
Sbjct: 181 QSKAFYKTARK 191
>pdb|1KIL|A Chain A, Three-Dimensional Structure Of The ComplexinSNARE COMPLEX
Length = 66
Score = 50.1 bits (118), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWI 189
+L + +AQV EV +M N++KVL+R +K+ L D+ + L++ A F K++RK W
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 64
Query: 190 QN 191
+N
Sbjct: 65 KN 66
>pdb|2KOG|A Chain A, Lipid-Bound Synaptobrevin Solution Nmr Structure
Length = 119
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWI 189
+L + +AQV EV +M N++KVL+R +K+ L D+ + L++ A F K++RK W
Sbjct: 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 93
Query: 190 QNM 192
+N+
Sbjct: 94 KNL 96
>pdb|3HD7|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3HD7|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup C 1 2 1
pdb|3IPD|A Chain A, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
pdb|3IPD|E Chain E, Helical Extension Of The Neuronal Snare Complex Into The
Membrane, Spacegroup I 21 21 21
Length = 91
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKM 187
+ +L + +AQV EV +M N++KVL+R +K+ L D+ + L++ A F K++RK
Sbjct: 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKY 63
Query: 188 WIQNM 192
W +N+
Sbjct: 64 WWKNL 68
>pdb|1SFC|A Chain A, Neuronal Synaptic Fusion Complex
pdb|1SFC|E Chain E, Neuronal Synaptic Fusion Complex
pdb|1SFC|I Chain I, Neuronal Synaptic Fusion Complex
Length = 96
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWI 189
+L + +AQV EV +M N++KVL+R +K+ L D+ + L++ A F K++RK W
Sbjct: 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWW 90
Query: 190 QNM 192
+N+
Sbjct: 91 KNL 93
>pdb|1N7S|A Chain A, High Resolution Structure Of A Truncated Neuronal Snare
Complex
Length = 63
Score = 48.1 bits (113), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMW 188
+L + +AQV EV +M N++KVL+R +K+ L D+ + L++ A F K++RK W
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63
>pdb|1L4A|A Chain A, X-Ray Structure Of The Neuronal ComplexinSNARE COMPLEX
From The Squid Loligo Pealei
Length = 80
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRRKMWI 189
+L + +AQV EV +M N++KVL+R KI L D+ + L++ A F K++RK W
Sbjct: 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWW 75
Query: 190 QN 191
+N
Sbjct: 76 KN 77
>pdb|3EGD|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|C Chain C, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 157
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Query: 27 NFTSIASQCLQKL-PATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERV 85
+ S A Q +KL + + T TF+Y++E G Y V+ + +++ A+LE +
Sbjct: 32 QYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 91
Query: 86 KEDFNKRYGGGKAATAVANSLNKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVM 145
+F++++ G K T EF + +++ + +D L + ++ +V+ +M
Sbjct: 92 HSEFDEQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYIDSRAR-RNLGSINTELQDVQRIM 149
Query: 146 MENIEKVL 153
+ NIE+VL
Sbjct: 150 VANIEEVL 157
>pdb|1GL2|A Chain A, Crystal Structure Of An Endosomal Snare Core Complex
Length = 65
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 38/56 (67%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQGTKMRR 185
++ ++++V VK +M +N+E++L RGE ++ L +KTE+L + ++ F+ K+ R
Sbjct: 10 RVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65
>pdb|1IFQ|A Chain A, Sec22b N-Terminal Domain
pdb|1IFQ|B Chain B, Sec22b N-Terminal Domain
Length = 138
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 27 NFTSIASQCLQKL-PATNNKFTYNCDGHTFNYLVENGFTYCVVAVESAGRQIPIAFLERV 85
+ S A Q +KL + + T TF+Y++E G Y V+ + +++ A+LE +
Sbjct: 43 QYQSQAKQLFRKLNEQSPTRCTLEAGAXTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDL 102
Query: 86 KEDFNKRYG 94
+F++++G
Sbjct: 103 HSEFDEQHG 111
>pdb|3RK2|A Chain A, Truncated Snare Complex
pdb|3RK2|E Chain E, Truncated Snare Complex
pdb|3RK3|A Chain A, Truncated Snare Complex With Complexin
pdb|3RL0|A Chain A, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|E Chain E, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|I Chain I, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|M Chain M, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Q Chain Q, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|U Chain U, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|Y Chain Y, Truncated Snare Complex With Complexin (P1)
pdb|3RL0|CC Chain c, Truncated Snare Complex With Complexin (P1)
Length = 37
Score = 30.4 bits (67), Expect = 0.75, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159
+L + +AQV EV +M N++KVL+R +K+
Sbjct: 8 RLQQTQAQVDEVVDIMRVNVDKVLERDQKL 37
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 37 QKLPATNNKFTYNCD-GHTFNYLVENGFTYCVVAV------ESAGRQIPIAF-LERVKED 88
Q +PA NN TY D ++ +++ G T+ A E +G I + LER+++
Sbjct: 180 QLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDA 239
Query: 89 FNKRYGGGKAATAVANSLNKEFGSKLK 115
K Y + TAV +N + G +K
Sbjct: 240 LKKVYLLAQGGTAVGTGINSKIGFDIK 266
>pdb|3ZYM|A Chain A, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|B Chain B, Structure Of Calm (Picalm) In Complex With Vamp8
pdb|3ZYM|C Chain C, Structure Of Calm (Picalm) In Complex With Vamp8
Length = 310
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 128 ISKLAKVKAQVSEVKGVMMENIEKVLDRGEKI 159
+ ++ ++++V VK +M +N+E++L RGE +
Sbjct: 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310
>pdb|3FIE|C Chain C, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
pdb|3FIE|D Chain D, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
Length = 38
Score = 28.9 bits (63), Expect = 2.2, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDR 155
+L + +AQV EV +M N++KVL+R
Sbjct: 10 RLQQTQAQVDEVVDIMRVNVDKVLER 35
>pdb|2FCT|A Chain A, Syrb2 With Fe(Ii), Chloride, And Alpha-Ketoglutarate
pdb|2FCT|B Chain B, Syrb2 With Fe(Ii), Chloride, And Alpha-Ketoglutarate
pdb|2FCU|A Chain A, Syrb2 With Alpha-Ketoglutarate
pdb|2FCU|B Chain B, Syrb2 With Alpha-Ketoglutarate
pdb|2FCV|A Chain A, Syrb2 With Fe(Ii), Bromide, And Alpha-Ketoglutarate
pdb|2FCV|B Chain B, Syrb2 With Fe(Ii), Bromide, And Alpha-Ketoglutarate
Length = 313
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 16 VILAEYTEFTGNFT--------SIASQCLQKLPATNNKFTYN 49
+I E EF G T +IA+ CLQ +P T N Y+
Sbjct: 133 IIWPENEEFGGTITVWTAFTDANIANGCLQFIPGTQNSMNYD 174
>pdb|2ZKR|PP Chain p, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 196
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 133 KVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQQ 179
KVK V + K ++ME+I K+ + +LL D+ E RS+ ++ R++
Sbjct: 126 KVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKR 172
>pdb|3FII|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh2)
Length = 33
Score = 27.3 bits (59), Expect = 7.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 130 KLAKVKAQVSEVKGVMMENIEKVLDR 155
+L + +AQV EV +M N++KVL+R
Sbjct: 5 RLQQTQAQVDEVVDIMRVNVDKVLER 30
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
pdb|2DVL|B Chain B, Crystal Structure Of Project Tt0160 From Thermus
Thermophilus Hb8
Length = 372
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 107 NKEFGSKLKEHMQYCVDHPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIEL 161
++FG KLKEH K+A + +++ + +++E K DRGE+ L
Sbjct: 261 REQFGKKLKEHQAIAF-------KIADMHVKIAAARALVLEAARKK-DRGERFTL 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,745,840
Number of Sequences: 62578
Number of extensions: 222268
Number of successful extensions: 681
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 32
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)