BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027770
(219 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LSX7|PEX22_ARATH Peroxisome biogenesis protein 22 OS=Arabidopsis thaliana GN=PEX22
PE=1 SV=1
Length = 283
Score = 275 bits (703), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 141/209 (67%), Positives = 165/209 (78%), Gaps = 6/209 (2%)
Query: 13 DSRSVGAIAGLALAIVFTWRMFRSPGAPQRRQPKRQAPSTSNSVGSTQANATS------T 66
DSRS+GAIAGLA+A++FTWR R+PG ++R+ ++ + + + A + S
Sbjct: 41 DSRSIGAIAGLAIAVIFTWRAIRTPGEQRQRRQPKRRIHNAETSSAAAAASQSNLASSVA 100
Query: 67 PFGASSSSEDLRTQIADALFQPVKPTLGQVVRQKLSEGRKVTCRLLGVILEESCPEELQK 126
P +S ++ + D FQPVKPTLGQ+VRQKLSEGRKVTCRLLGVILEE+ PEELQK
Sbjct: 101 PEVSSPREDNAVQDVVDQFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEETSPEELQK 160
Query: 127 QVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCS 186
Q TV+SSVLE LLEITK+ DLYLMERVLD+ESE KVL ALE AGVFTSGGLVKDKVLFCS
Sbjct: 161 QATVRSSVLEVLLEITKYSDLYLMERVLDDESEAKVLQALENAGVFTSGGLVKDKVLFCS 220
Query: 187 TEIGRTSFVRQLEPDWHIDTNPEIVSQLA 215
TEIGRTSFVRQLEPDWHIDTNPEI +QLA
Sbjct: 221 TEIGRTSFVRQLEPDWHIDTNPEISTQLA 249
>sp|Q7TMB8|CYFP1_MOUSE Cytoplasmic FMR1-interacting protein 1 OS=Mus musculus GN=Cyfip1
PE=1 SV=1
Length = 1253
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 122 EELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKD 180
+ LQ+Q+ V S E L +I C Y R+ SEK +LL + G++ G V +
Sbjct: 222 QSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSN 280
>sp|Q7L576|CYFP1_HUMAN Cytoplasmic FMR1-interacting protein 1 OS=Homo sapiens GN=CYFIP1
PE=1 SV=1
Length = 1253
Score = 31.2 bits (69), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 122 EELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKD 180
+ LQ+Q+ V S E L +I C Y R+ SEK +LL + G++ G V +
Sbjct: 222 QSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSN 280
>sp|P59811|YIDC_STRAW Membrane protein insertase YidC OS=Streptomyces avermitilis (strain
ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
8165 / MA-4680) GN=yidC PE=3 SV=1
Length = 428
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 38 GAPQRRQPKRQAPSTSNSVGSTQANA----TSTPFGASSSSE 75
GAP+R+QPKRQ+ S S GS +A STP S S E
Sbjct: 346 GAPRRQQPKRQSKSQRQS-GSAKAAGESEPKSTPLSLSKSDE 386
>sp|P0ABU7|EXBB_ECOLI Biopolymer transport protein ExbB OS=Escherichia coli (strain
K12) GN=exbB PE=1 SV=1
Length = 244
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 22 GLALAIVFTWRMFRSPGAP---QRRQPKRQAPSTSNSVGSTQANATSTPFGASSSSEDLR 78
GL LA V TW +F S Q+R+ KR+ + + QAN + FG+ S S L
Sbjct: 29 GLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLL 88
Query: 79 TQIADAL 85
+ + L
Sbjct: 89 NEAQNEL 95
>sp|P0ABU8|EXBB_ECO57 Biopolymer transport protein ExbB OS=Escherichia coli O157:H7
GN=exbB PE=3 SV=1
Length = 244
Score = 30.8 bits (68), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 22 GLALAIVFTWRMFRSPGAP---QRRQPKRQAPSTSNSVGSTQANATSTPFGASSSSEDLR 78
GL LA V TW +F S Q+R+ KR+ + + QAN + FG+ S S L
Sbjct: 29 GLILASVVTWAIFFSKSVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLL 88
Query: 79 TQIADAL 85
+ + L
Sbjct: 89 NEAQNEL 95
>sp|Q12830|BPTF_HUMAN Nucleosome-remodeling factor subunit BPTF OS=Homo sapiens GN=BPTF
PE=1 SV=3
Length = 3046
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 15/81 (18%)
Query: 23 LALAIVFTWRMFRSPGAPQ-------RRQPKRQAPSTSNSVGSTQANATSTPFGASSSSE 75
L AI+ T M + PGAPQ R QP A S N+V +STP S +S
Sbjct: 2199 LGKAIIRTPVMVQ-PGAPQQVMTQIIRGQPVSTAVSAPNTV-------SSTPGQKSLTSA 2250
Query: 76 DLRTQIADALFQPVKPTLGQV 96
+ I + QP +P GQV
Sbjct: 2251 TSTSNIQSSASQPPRPQQGQV 2271
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,776,061
Number of Sequences: 539616
Number of extensions: 2782951
Number of successful extensions: 10905
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 10883
Number of HSP's gapped (non-prelim): 53
length of query: 219
length of database: 191,569,459
effective HSP length: 113
effective length of query: 106
effective length of database: 130,592,851
effective search space: 13842842206
effective search space used: 13842842206
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)