Query 027770
Match_columns 219
No_of_seqs 55 out of 57
Neff 3.4
Searched_HMMs 29240
Date Tue Mar 26 01:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027770.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027770hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y9m_B Peroxisome assembly pro 92.2 0.016 5.4E-07 47.1 -1.2 27 178-204 61-87 (130)
2 2l2t_A Receptor tyrosine-prote 82.2 1.5 5.1E-05 29.5 3.7 21 16-36 16-36 (44)
3 2ks1_B Epidermal growth factor 81.3 1.6 5.6E-05 29.2 3.6 21 16-36 17-37 (44)
4 3ks6_A Glycerophosphoryl diest 61.6 9.6 0.00033 31.6 4.6 62 136-204 89-157 (250)
5 3ch0_A Glycerophosphodiester p 57.0 9.2 0.00032 31.6 3.8 52 146-204 130-193 (272)
6 2k1k_A Ephrin type-A receptor 55.9 9.3 0.00032 24.6 2.8 16 13-28 6-21 (38)
7 2o55_A Putative glycerophospho 55.5 11 0.00037 31.1 3.9 62 136-204 96-166 (258)
8 2rbg_A Putative uncharacterize 55.4 18 0.0006 29.2 4.9 70 100-189 29-98 (126)
9 2pz0_A Glycerophosphoryl diest 50.2 12 0.00041 30.8 3.4 62 135-203 102-168 (252)
10 3no3_A Glycerophosphodiester p 48.8 16 0.00054 30.1 3.9 65 132-204 83-155 (238)
11 3qvq_A Phosphodiesterase OLEI0 45.7 15 0.0005 30.4 3.2 63 136-204 101-168 (252)
12 2oog_A Glycerophosphoryl diest 45.4 7.1 0.00024 32.9 1.3 58 146-203 133-194 (287)
13 3l12_A Putative glycerophospho 45.3 21 0.00073 30.4 4.3 52 146-204 143-205 (313)
14 4gyw_A UDP-N-acetylglucosamine 40.8 34 0.0012 32.9 5.4 75 125-207 530-607 (723)
15 1o1z_A GDPD, glycerophosphodie 35.9 35 0.0012 27.9 4.0 45 146-203 103-147 (234)
16 2fpr_A Histidine biosynthesis 35.5 1.4E+02 0.0049 22.5 7.4 78 102-185 12-104 (176)
17 1vd6_A Glycerophosphoryl diest 34.5 22 0.00075 28.7 2.5 58 135-202 82-145 (224)
18 2knc_B Integrin beta-3; transm 34.1 26 0.00089 25.5 2.6 21 15-35 16-36 (79)
19 2p9j_A Hypothetical protein AQ 29.5 93 0.0032 22.6 5.1 70 98-171 3-75 (162)
20 2k9j_B Integrin beta-3; transm 29.3 40 0.0014 22.0 2.6 19 16-34 16-34 (43)
21 2kxa_A Haemagglutinin HA2 chai 27.8 40 0.0014 21.1 2.3 21 17-37 3-27 (30)
22 2obb_A Hypothetical protein; s 26.8 1.9E+02 0.0065 22.5 6.7 91 105-205 4-96 (142)
23 2otd_A Glycerophosphodiester p 26.2 60 0.002 26.4 3.8 62 136-203 98-164 (247)
24 2p23_A FGF-19, fibroblast grow 21.4 50 0.0017 27.8 2.5 32 175-206 17-48 (194)
25 3icj_A Uncharacterized metal-d 21.0 1.7E+02 0.006 26.9 6.3 53 128-187 324-376 (534)
26 2l34_A TYRO protein tyrosine k 20.2 75 0.0026 19.8 2.5 14 15-28 4-17 (33)
27 2kz7_C Carmil homolog, leucine 20.0 57 0.0019 24.7 2.2 10 79-88 71-80 (85)
No 1
>2y9m_B Peroxisome assembly protein 22; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9o_B 2y9p_B
Probab=92.25 E-value=0.016 Score=47.13 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=25.7
Q ss_pred ccceEEeeecCcCccceeeecccceee
Q 027770 178 VKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (219)
Q Consensus 178 ~rHKVLFCST~~Gr~sfVRQLeP~lHI 204 (219)
+.||||.|+|.+|+-+.+|+|+|+..+
T Consensus 61 ~nyKIi~Csn~qG~ws~vK~Lkk~~LL 87 (130)
T 2y9m_B 61 NEHKIIYCDSMDGLWSCVRRLGKFQCI 87 (130)
T ss_dssp CGGGEEEESCHHHHHHHHHHHCCSEEE
T ss_pred CcceEEEeccHHHHHHHHHhcCCceEE
Confidence 559999999999999999999999988
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=82.22 E-value=1.5 Score=29.50 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcC
Q 027770 16 SVGAIAGLALAIVFTWRMFRS 36 (219)
Q Consensus 16 s~~~~ag~a~a~v~~w~~lr~ 36 (219)
=+|+++++++.....|.++|.
T Consensus 16 VVgGv~~v~ii~~~~~~~~RR 36 (44)
T 2l2t_A 16 VIGGLFILVIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred ehHHHHHHHHHHHHHHHHhhh
Confidence 367778887777777888885
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=81.31 E-value=1.6 Score=29.18 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHhhcC
Q 027770 16 SVGAIAGLALAIVFTWRMFRS 36 (219)
Q Consensus 16 s~~~~ag~a~a~v~~w~~lr~ 36 (219)
=+|+++++++.+...|.++|-
T Consensus 17 VVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 17 MVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhhh
Confidence 467788888877777888884
No 4
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A*
Probab=61.58 E-value=9.6 Score=31.58 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=47.3
Q ss_pred HHHHHHhhcCceEEEEEeech-------hhHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccceee
Q 027770 136 EALLEITKFCDLYLMERVLDN-------ESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (219)
Q Consensus 136 evLleLsk~~DlYLm~~V~dD-------~eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lHI 204 (219)
+-++++.+..+++|+.-++++ .-++.+.++++++|+- ++++|.|-.......+|++.|.+.+
T Consensus 89 ~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~-------~~v~~~SF~~~~l~~~~~~~p~~~~ 157 (250)
T 3ks6_A 89 EELCALYVDSHVNFRCEIKPGVDGLPYEGFVALVIAGLERHSML-------ERTTFSSFLLASMDELWKATTRPRL 157 (250)
T ss_dssp HHHHHHHTTCSCEEEEEECCCTTSCCCTTHHHHHHHHHHHTTCG-------GGEEEEESCHHHHHHHHHHCCSCEE
T ss_pred HHHHHHHhccCcEEEEEeCCCcccCcchHHHHHHHHHHHhcCCC-------CCEEEEeCCHHHHHHHHHHCCCCcE
Confidence 334445554678999999873 3478899999996542 6899999988888889999998765
No 5
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=57.03 E-value=9.2 Score=31.60 Aligned_cols=52 Identities=12% Similarity=0.199 Sum_probs=39.4
Q ss_pred ceEEEEEeechhh------------HHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccceee
Q 027770 146 DLYLMERVLDNES------------EKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (219)
Q Consensus 146 DlYLm~~V~dD~e------------E~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lHI 204 (219)
++.+..-++++.. ++.+++++++.|.- ++|+|.|-.-.....+|++.|.+.+
T Consensus 130 ~~~l~iEiK~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~-------~~v~i~Sf~~~~l~~~~~~~p~~~~ 193 (272)
T 3ch0_A 130 KIQYNGEIKSTVEGDNIDHPNIALFCDLVVAEIKKAHIT-------DRFTLQSFDVRALEYMHSQYPDIKL 193 (272)
T ss_dssp SCEEEEEECCCGGGBTTTBCCHHHHHHHHHHHHHHTTCG-------GGEEEEESCHHHHHHHHHHCTTSEE
T ss_pred CceEEEEECCCcCcccccCccHHHHHHHHHHHHHHcCCC-------CcEEEEeCCHHHHHHHHHHCCCCcE
Confidence 7888888887643 57889999986542 6899999887777788888886543
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=55.94 E-value=9.3 Score=24.57 Aligned_cols=16 Identities=13% Similarity=0.322 Sum_probs=9.7
Q ss_pred CCchHHHHHHHHHHHH
Q 027770 13 DSRSVGAIAGLALAIV 28 (219)
Q Consensus 13 ~~~s~~~~ag~a~a~v 28 (219)
+..|-|+|||..+..+
T Consensus 6 ~~ls~GaIAGiVvG~v 21 (38)
T 2k1k_A 6 RGLTGGEIVAVIFGLL 21 (38)
T ss_dssp TTCCHHHHHHHHHHHH
T ss_pred CCCCCCceeeeehHHH
Confidence 3456777777655443
No 7
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria}
Probab=55.53 E-value=11 Score=31.10 Aligned_cols=62 Identities=24% Similarity=0.352 Sum_probs=44.5
Q ss_pred HHHHHHhhcC--ceEEEEEeechh-------hHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccceee
Q 027770 136 EALLEITKFC--DLYLMERVLDNE-------SEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (219)
Q Consensus 136 evLleLsk~~--DlYLm~~V~dD~-------eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lHI 204 (219)
+-++++.+.. +++|+.-++++. -++.++++++++|+ .++|+|+|-.-.....+|++.|.+.+
T Consensus 96 ~evl~~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~-------~~~v~i~Sf~~~~l~~~~~~~p~~~~ 166 (258)
T 2o55_A 96 EELFVAIEEQKFNLKLNLELKGEEWKRKESGDHQRLLLLVEKYHM-------QERVDYCSFHHEALAHLKALCPDVKI 166 (258)
T ss_dssp HHHHHHHHHSCSCCEEEEEECCSSSSSTTSSHHHHHHHHHHTTTC-------GGGEEEEESSHHHHHHHHHHCTTCEE
T ss_pred HHHHHHhhhhcCceEEEEEEccCCccccchHHHHHHHHHHHHcCC-------CCCEEEEeCCHHHHHHHHHHCCCCcE
Confidence 3344455544 788888888754 46789999998653 26899999887777788888887643
No 8
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=55.43 E-value=18 Score=29.16 Aligned_cols=70 Identities=24% Similarity=0.310 Sum_probs=42.0
Q ss_pred HhcCceeEEEeecceeeccCChhhhhccceeehhHHHHHHHHhhcCceEEEEEeechhhHHHHHHHHHHcCCCCCCCCcc
Q 027770 100 KLSEGRKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVK 179 (219)
Q Consensus 100 kls~~RkvTis~~gvvlee~sp~el~~~a~v~esalevLleLsk~~DlYLm~~V~dD~eE~~Vl~~Le~~GlF~~gGL~r 179 (219)
|++|+||++|-...=+ +...|..+++|+|++=- |+=+=..+=..+|-+++++=+.++ +..|+
T Consensus 29 R~~GskKvviNvis~~----------~y~e~v~~~REAiLDNI---DlG~el~~WKp~eVdkm~~k~~q~---~~dGl-- 90 (126)
T 2rbg_A 29 RSSGSKKTTINVFTEI----------QYQELVTLIREALLENI---DIGYELFLWKKNEVDIFLKNLEKS---EVDGL-- 90 (126)
T ss_dssp HHHTCSEEEEEEECSS----------CHHHHHHHTHHHHHHTT---TSEEEEEEECGGGHHHHHHHHTTC---CCCEE--
T ss_pred HhcCCceEEEEEecCC----------cHHHHHHHHHHHHHhcc---ccceEEEEeCHHHHHHHHHHHHHh---CCCce--
Confidence 8999999998654332 55667778888888633 332222333445555555555443 32244
Q ss_pred ceEEeeecCc
Q 027770 180 DKVLFCSTEI 189 (219)
Q Consensus 180 HKVLFCST~~ 189 (219)
+.||+-++
T Consensus 91 --~iYCDdeN 98 (126)
T 2rbg_A 91 --LVYCDDEN 98 (126)
T ss_dssp --EEEECGGG
T ss_pred --EEEeCCCc
Confidence 67887654
No 9
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=50.19 E-value=12 Score=30.84 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCceEEEEEeechh-----hHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeeccccee
Q 027770 135 LEALLEITKFCDLYLMERVLDNE-----SEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWH 203 (219)
Q Consensus 135 levLleLsk~~DlYLm~~V~dD~-----eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lH 203 (219)
++-++++.+..++.|+.-++++. -++.+.++++++|.- ++|+|+|-......-+|++.|.+.
T Consensus 102 L~evL~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~~-------~~vii~SF~~~~l~~~~~~~p~~~ 168 (252)
T 2pz0_A 102 LYEVFELIGDKDFLVNIEIKSGIVLYPGIEEKLIKAIKEYNFE-------ERVIISSFNHYSLRDVKKMAPHLK 168 (252)
T ss_dssp HHHHHHHHTTSCCEEEEEECCSSCCCTTHHHHHHHHHHHTTCT-------TTEEEEESBHHHHHHHHHHCTTSE
T ss_pred HHHHHHHhhhcCCeEEEEeCCCCcccHHHHHHHHHHHHhcCCC-------CCEEEEeCCHHHHHHHHHHCCCCC
Confidence 33344555556788888888764 357899999987542 578998877776677788877653
No 10
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0
Probab=48.80 E-value=16 Score=30.11 Aligned_cols=65 Identities=9% Similarity=0.134 Sum_probs=45.8
Q ss_pred hhHHHHHHHHhhcC-ceEEEEEeechhh-------HHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeeccccee
Q 027770 132 SSVLEALLEITKFC-DLYLMERVLDNES-------EKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWH 203 (219)
Q Consensus 132 esalevLleLsk~~-DlYLm~~V~dD~e-------E~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lH 203 (219)
+.--|+| ++.+.. +++|+.-++++.. ++.+.++++++|+ .++|+|+|-.-.....+|++.|.+.
T Consensus 83 ptL~evl-~~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~-------~~~v~~~Sf~~~~l~~~~~~~p~~~ 154 (238)
T 3no3_A 83 PTLEQYL-KRAKKLKNIRLIFELKSHDTPERNRDAARLSVQMVKRMKL-------AKRTDYISFNMDACKEFIRLCPKSE 154 (238)
T ss_dssp CBHHHHH-HHHHHCTTCEEEEEECCCSSHHHHHHHHHHHHHHHHHTTC-------GGGEEEEESCHHHHHHHHHHCTTSC
T ss_pred CcHHHHH-HHHhhcCCceEEEEeCCCCCcchhHHHHHHHHHHHHHcCC-------cCCEEEEECCHHHHHHHHHHCCCCe
Confidence 3333443 444444 7899899987642 3678888888654 2689999988888888999998765
Q ss_pred e
Q 027770 204 I 204 (219)
Q Consensus 204 I 204 (219)
+
T Consensus 155 ~ 155 (238)
T 3no3_A 155 V 155 (238)
T ss_dssp E
T ss_pred E
Confidence 4
No 11
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=45.71 E-value=15 Score=30.41 Aligned_cols=63 Identities=14% Similarity=-0.004 Sum_probs=43.8
Q ss_pred HHHHHHhhcCceEEEEEeechhh-----HHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccceee
Q 027770 136 EALLEITKFCDLYLMERVLDNES-----EKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (219)
Q Consensus 136 evLleLsk~~DlYLm~~V~dD~e-----E~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lHI 204 (219)
+-++++.+..+++|+.-++++.. ++.+..++++++. ..++|+|+|=.......+|++.|.+.+
T Consensus 101 ~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~------~~~~vii~SF~~~~l~~~~~~~p~~~~ 168 (252)
T 3qvq_A 101 LEAIEVISQYGMGLNLELKPCEGLEEETIAASVEVLKQHWP------QDLPLLFSSFNYFALVSAKALWPEIAR 168 (252)
T ss_dssp HHHHHHHHHTTCEEEEEECCCTTCHHHHHHHHHHHHHHHSC------TTSCEEEEESCHHHHHHHHHHCTTSCE
T ss_pred HHHHHHHhccCcEEEEEecCCCCccHHHHHHHHHHHHHhCc------ccCCEEEEeCCHHHHHHHHHHCCCCcE
Confidence 33444555457888888886432 2556777887553 236899999888888889999887654
No 12
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A
Probab=45.37 E-value=7.1 Score=32.90 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=40.0
Q ss_pred ceEEEEEeechhh----HHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeeccccee
Q 027770 146 DLYLMERVLDNES----EKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWH 203 (219)
Q Consensus 146 DlYLm~~V~dD~e----E~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lH 203 (219)
++.|..-++++.. ++.++++++++|..++.....++|+|.|-..-....+|++.|.+-
T Consensus 133 ~~~l~IEiK~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~vii~SF~~~~l~~~~~~~p~~~ 194 (287)
T 2oog_A 133 NANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVP 194 (287)
T ss_dssp TSCEEEECCCTTTSTTHHHHHHHHHHHTTCSSHHHHHTTSEEEEESCHHHHHHHHHHCTTSC
T ss_pred CceEEEEECCCCCcchHHHHHHHHHHHcCCcccccCCCCCEEEEeCCHHHHHHHHHhCCCCc
Confidence 5666667776532 478999999987754222235789999877666677788877653
No 13
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi}
Probab=45.32 E-value=21 Score=30.39 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=41.4
Q ss_pred ceEEEEEeechh-----------hHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccceee
Q 027770 146 DLYLMERVLDNE-----------SEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (219)
Q Consensus 146 DlYLm~~V~dD~-----------eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lHI 204 (219)
++.|..-++++. -++.++++++++|+- ++|+|.|-.......+|++.|.+.+
T Consensus 143 ~~~l~IEiK~~~~~~~~~~~~~~~~~~v~~~l~~~~~~-------~~v~i~SF~~~~l~~~~~~~p~~~~ 205 (313)
T 3l12_A 143 APYLLLELKSDPALMHDHAARAEMVAAVLADVRRYRME-------PRTVMHSFDWALLGECRRQAPDLPT 205 (313)
T ss_dssp CCEEEEEECCCGGGTTCHHHHHHHHHHHHHHHHHTTCG-------GGEEEEESCHHHHHHHHHHCTTSCE
T ss_pred CceEEEEEccCCccccccccHHHHHHHHHHHHHHcCCC-------CCEEEEcCCHHHHHHHHHHCCCCcE
Confidence 788888888863 257888899986542 6899999999888999999997543
No 14
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=40.81 E-value=34 Score=32.88 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=59.8
Q ss_pred hccceeehhHHHHHHHHhhc---CceEEEEEeechhhHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccc
Q 027770 125 QKQVTVKSSVLEALLEITKF---CDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPD 201 (219)
Q Consensus 125 ~~~a~v~esalevLleLsk~---~DlYLm~~V~dD~eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~ 201 (219)
.+.+++.+++.++..+|.+- +-|.|+. .+...++++...+++ .|+..+||.|.....-..++-|.-.-|
T Consensus 530 N~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~--~~~~~~~~l~~~~~~------~gi~~~r~~f~~~~~~~~~l~~~~~~D 601 (723)
T 4gyw_A 530 NQLYKIDPSTLQMWANILKRVPNSVLWLLR--FPAVGEPNIQQYAQN------MGLPQNRIIFSPVAPKEEHVRRGQLAD 601 (723)
T ss_dssp SCGGGCCHHHHHHHHHHHHHCSSEEEEEEE--TTGGGHHHHHHHHHH------TTCCGGGEEEEECCCHHHHHHHGGGCS
T ss_pred CccccCCHHHHHHHHHHHHhCCCCeEEEEe--CcHHHHHHHHHHHHh------cCCCcCeEEECCCCCHHHHHHHhCCCe
Confidence 45778899999999998886 4566654 456677888888887 477789999998877778888888889
Q ss_pred eeecCC
Q 027770 202 WHIDTN 207 (219)
Q Consensus 202 lHIDtd 207 (219)
+.+||-
T Consensus 602 i~LDt~ 607 (723)
T 4gyw_A 602 VCLDTP 607 (723)
T ss_dssp EEECCS
T ss_pred EEeCCC
Confidence 999964
No 15
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3
Probab=35.87 E-value=35 Score=27.93 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=36.1
Q ss_pred ceEEEEEeechhhHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeeccccee
Q 027770 146 DLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWH 203 (219)
Q Consensus 146 DlYLm~~V~dD~eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lH 203 (219)
.+.|..-++++.-++.+.+++++ .++|+|+|-. ..-+|++.|.+-
T Consensus 103 ~~~l~iEiK~~~~~~~v~~~l~~----------~~~vii~Sf~---l~~~~~~~p~~~ 147 (234)
T 1o1z_A 103 DKIINIEIKEREAADAVLEISKK----------RKNLIFSSFD---LDLLDEKFKGTK 147 (234)
T ss_dssp TSEEEEEECCGGGHHHHHHHHTT----------CCSEEEEESC---HHHHHHHCTTSC
T ss_pred CCeEEEEeCCccHHHHHHHHHhc----------cCCEEEEchh---HHHHHhhCCCCc
Confidence 36777788888888899999877 3789998877 777888888754
No 16
>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*
Probab=35.45 E-value=1.4e+02 Score=22.50 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=50.5
Q ss_pred cCceeEEEeecceeeccCC---hhhhhccceeehhHHHHHHHHhhc-CceEEEEEee-------c----hhhHHHHHHHH
Q 027770 102 SEGRKVTCRLLGVILEESC---PEELQKQVTVKSSVLEALLEITKF-CDLYLMERVL-------D----NESEKKVLLAL 166 (219)
Q Consensus 102 s~~RkvTis~~gvvlee~s---p~el~~~a~v~esalevLleLsk~-~DlYLm~~V~-------d----D~eE~~Vl~~L 166 (219)
|+-|-+.+-..|++..+.+ .........+.+.+++.|.+|.+. ..+++++--. + +..+..+...|
T Consensus 12 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l 91 (176)
T 2fpr_A 12 SSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIF 91 (176)
T ss_dssp -CCEEEEECSBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHH
T ss_pred CcCcEEEEeCCCCeEcCCCCCcCcCCHHHCcCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHH
Confidence 5667788888999876542 222234677899999999998765 5566655320 0 01567788888
Q ss_pred HHcCCCCCCCCccceEEee
Q 027770 167 ETAGVFTSGGLVKDKVLFC 185 (219)
Q Consensus 167 e~~GlF~~gGL~rHKVLFC 185 (219)
+..|+. -+.|++|
T Consensus 92 ~~~gl~------fd~v~~s 104 (176)
T 2fpr_A 92 TSQGVQ------FDEVLIC 104 (176)
T ss_dssp HHTTCC------EEEEEEE
T ss_pred HHcCCC------eeEEEEc
Confidence 887653 2556666
No 17
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A
Probab=34.49 E-value=22 Score=28.73 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=37.9
Q ss_pred HHHHHHHhh-cCceEEEEEeechhh-----HHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccce
Q 027770 135 LEALLEITK-FCDLYLMERVLDNES-----EKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDW 202 (219)
Q Consensus 135 levLleLsk-~~DlYLm~~V~dD~e-----E~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~l 202 (219)
++-++++.+ ..+++|+.-++++.. ++.+.+++++ .++|+|.|-.-.....+|++.|.+
T Consensus 82 L~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~----------~~~v~i~Sf~~~~l~~~~~~~p~~ 145 (224)
T 1vd6_A 82 LEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRG----------REGVWVSSFDPLALLALRKAAPGL 145 (224)
T ss_dssp HHHHHGGGGTCTTCEEEEEECCCTTSHHHHHHHHHHHTTT----------CSSEEEEESCHHHHHHHHHHCTTS
T ss_pred HHHHHHhhhccCCceEEEEECCCCCccHHHHHHHHHHHhc----------CCcEEEEeCCHHHHHHHHHHCCCC
Confidence 344455555 557888888887653 4556666655 368888887666666677776654
No 18
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=34.13 E-value=26 Score=25.49 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=15.3
Q ss_pred chHHHHHHHHHHHHHHHHhhc
Q 027770 15 RSVGAIAGLALAIVFTWRMFR 35 (219)
Q Consensus 15 ~s~~~~ag~a~a~v~~w~~lr 35 (219)
+.+|+|+.+.+.+++.||++.
T Consensus 16 gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 16 SVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356667767777889999765
No 19
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=29.49 E-value=93 Score=22.56 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=42.2
Q ss_pred HHHhcCceeEEEeecceeeccCCh--hhhhccceeehhHHHHHHHHhhc-CceEEEEEeechhhHHHHHHHHHHcCC
Q 027770 98 RQKLSEGRKVTCRLLGVILEESCP--EELQKQVTVKSSVLEALLEITKF-CDLYLMERVLDNESEKKVLLALETAGV 171 (219)
Q Consensus 98 ~~kls~~RkvTis~~gvvlee~sp--~el~~~a~v~esalevLleLsk~-~DlYLm~~V~dD~eE~~Vl~~Le~~Gl 171 (219)
++++..-|-+-+-+.|+++..... .+.+....+.+.+.+.|.+|.+. ..+++++ ...+..+...++..|+
T Consensus 3 ~~~~~~~k~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T----~~~~~~~~~~l~~~gl 75 (162)
T 2p9j_A 3 RDRVKKLKLLIMDIDGVLTDGKLYYTEHGETIKVFNVLDGIGIKLLQKMGITLAVIS----GRDSAPLITRLKELGV 75 (162)
T ss_dssp HHHHHHCCEEEECCTTTTSCSEEEEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEE----SCCCHHHHHHHHHTTC
T ss_pred cccccceeEEEEecCcceECCceeecCCCceeeeecccHHHHHHHHHHCCCEEEEEe----CCCcHHHHHHHHHcCC
Confidence 345556678899999999753321 11122345667788888888765 4555543 2334556666777665
No 20
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=29.32 E-value=40 Score=22.02 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 027770 16 SVGAIAGLALAIVFTWRMF 34 (219)
Q Consensus 16 s~~~~ag~a~a~v~~w~~l 34 (219)
.+|+++.+.+++...||++
T Consensus 16 vi~~ivliGl~lLliwk~~ 34 (43)
T 2k9j_B 16 VMGAILLIGLAALLIWKLL 34 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566665666778889876
No 21
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=27.83 E-value=40 Score=21.07 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=13.6
Q ss_pred HHHHHHHHH----HHHHHHHhhcCC
Q 027770 17 VGAIAGLAL----AIVFTWRMFRSP 37 (219)
Q Consensus 17 ~~~~ag~a~----a~v~~w~~lr~~ 37 (219)
+||||||.. .++-.|+=.|..
T Consensus 3 FGAIAGfieggW~gmi~gwyG~~h~ 27 (30)
T 2kxa_A 3 FGAIAGFIEGGWTGMIDGWYGSGKK 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---
T ss_pred chhhhhhhhcCcccccccccceeec
Confidence 699999986 466677665543
No 22
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=26.81 E-value=1.9e+02 Score=22.47 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=56.7
Q ss_pred eeEEEeecceeeccCChhhhhccceeehhHHHHHHHHhhcCceEEEEEeechhhHHHHHHHHHHcCCCCCC-CCc-cceE
Q 027770 105 RKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSG-GLV-KDKV 182 (219)
Q Consensus 105 RkvTis~~gvvlee~sp~el~~~a~v~esalevLleLsk~~DlYLm~~V~dD~eE~~Vl~~Le~~GlF~~g-GL~-rHKV 182 (219)
+-+-+=+.|+++....+ +-....++++++|.++-+.--..+++.-.+...-..+...+++.|+-... +.+ ++.+
T Consensus 4 k~i~~DlDGTL~~~~~~----~i~~~~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~~~~I~~n~P~~~ 79 (142)
T 2obb_A 4 MTIAVDFDGTIVEHRYP----RIGEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAANKDYPEEE 79 (142)
T ss_dssp CEEEECCBTTTBCSCTT----SCCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEESSSSTTC-
T ss_pred eEEEEECcCCCCCCCCc----cccccCHHHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCCeEEEEcCCchhh
Confidence 45667788998774322 11134578999999997665555666666666667788888887764310 111 1222
Q ss_pred EeeecCcCccceeeecccceeec
Q 027770 183 LFCSTEIGRTSFVRQLEPDWHID 205 (219)
Q Consensus 183 LFCST~~Gr~sfVRQLeP~lHID 205 (219)
.|| ...+|.++|++=||
T Consensus 80 ~~~------~~~~rK~~~~~fID 96 (142)
T 2obb_A 80 RDH------QGFSRKLKADLFID 96 (142)
T ss_dssp --C------CSCCSSCCCSEEEC
T ss_pred hcc------hhhcCCcCCCEEee
Confidence 232 24678889999888
No 23
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=26.19 E-value=60 Score=26.39 Aligned_cols=62 Identities=19% Similarity=0.166 Sum_probs=41.1
Q ss_pred HHHHHHhhcCceEEEEEeechh-----hHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeeccccee
Q 027770 136 EALLEITKFCDLYLMERVLDNE-----SEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWH 203 (219)
Q Consensus 136 evLleLsk~~DlYLm~~V~dD~-----eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lH 203 (219)
+-++++.+..++.|..-++++. -++.+.+++++.. .|.. +|+|+|-.-.....+|++.|.+.
T Consensus 98 ~evl~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~----~~~~--~v~i~Sf~~~~l~~~~~~~p~~~ 164 (247)
T 2otd_A 98 SQVAERCREHGMMANIEIKPTTGTGPLTGKMVALAARQLW----AGMT--PPLLSSFEIDALEAAQQAAPELP 164 (247)
T ss_dssp HHHHHHHHHTTCEEEEEECCCTTCHHHHHHHHHHHHHHHT----TTSC--CCEEEESCHHHHHHHHHHCTTSC
T ss_pred HHHHHHHHhcCCEEEEEECCCCCcchHHHHHHHHHHHHHh----cCcC--CEEEEcCCHHHHHHHHHHCCCCC
Confidence 3344455545788888888753 2467888888742 1333 88888877766677788877654
No 24
>2p23_A FGF-19, fibroblast growth factor 19; atypical beta-trefoil fold, signaling protein; 1.80A {Homo sapiens} SCOP: b.42.1.1
Probab=21.44 E-value=50 Score=27.84 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=28.3
Q ss_pred CCCccceEEeeecCcCccceeeecccceeecC
Q 027770 175 GGLVKDKVLFCSTEIGRTSFVRQLEPDWHIDT 206 (219)
Q Consensus 175 gGL~rHKVLFCST~~Gr~sfVRQLeP~lHIDt 206 (219)
||..|.+=|||.|.-|..++-=||.|+=+||+
T Consensus 17 g~~~R~~qLY~rtg~g~~~~~LqI~~dG~V~G 48 (194)
T 2p23_A 17 GDPIRLRHLYTSGPHGLSSCFLRIRADGVVDC 48 (194)
T ss_dssp -CCCEEEEEEEECTTSCCEEEEEECTTSBEEE
T ss_pred CCccEEEEEEEccCCCCcceEEEECCCCcEeC
Confidence 58999999999999998899999999988885
No 25
>3icj_A Uncharacterized metal-dependent hydrolase; structural genomics, amidohydrolase, PSI-2, protein structur initiative; HET: KCX; 1.95A {Pyrococcus furiosus} PDB: 3etk_A* 3igh_X*
Probab=20.99 E-value=1.7e+02 Score=26.93 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=44.4
Q ss_pred ceeehhHHHHHHHHhhcCceEEEEEeechhhHHHHHHHHHHcCCCCCCCCccceEEeeec
Q 027770 128 VTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCST 187 (219)
Q Consensus 128 a~v~esalevLleLsk~~DlYLm~~V~dD~eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST 187 (219)
..+-++.++.+++.+...++.+..|...|...+.+++++++.+ .+|+|-=|..
T Consensus 324 ~~~~~e~l~~~v~~A~~~G~~v~~Ha~gd~ai~~~l~a~~~~~-------~r~~ieH~~~ 376 (534)
T 3icj_A 324 LVMNKDEIVEVIERAKPLGLDVAVHAIGDKAVDVALDAFEEAE-------FSGRIEHASL 376 (534)
T ss_dssp CSSCHHHHHHHHHHHTTTTCEEEEEECSHHHHHHHHHHHHHHT-------CCCEEEECCB
T ss_pred ccCCHHHHHHHHHHHHHCCCEEEEEEcChHHHHHHHHHHHhcc-------CCCEEEECCC
Confidence 3466788999999999999999999999999999999999866 4566666653
No 26
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=20.22 E-value=75 Score=19.79 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=8.6
Q ss_pred chHHHHHHHHHHHH
Q 027770 15 RSVGAIAGLALAIV 28 (219)
Q Consensus 15 ~s~~~~ag~a~a~v 28 (219)
.|.|+|||+.++-+
T Consensus 4 L~~gaIaGIVvgdi 17 (33)
T 2l34_A 4 VSPGVLAGIVVGDL 17 (33)
T ss_dssp CCTHHHHHHHHHHH
T ss_pred cCcceEEeEeHHHH
Confidence 35677777765543
No 27
>2kz7_C Carmil homolog, leucine-rich repeat-containing protein 16A; trosy, paramagnetic relaxation enhancement, protein-protein protein binding; NMR {Mus musculus}
Probab=20.01 E-value=57 Score=24.70 Aligned_cols=10 Identities=20% Similarity=0.348 Sum_probs=6.6
Q ss_pred HHhhhhhcCC
Q 027770 79 TQIADALFQP 88 (219)
Q Consensus 79 ~~~~~~~~~~ 88 (219)
.+=||+||.-
T Consensus 71 DEGveEFFsK 80 (85)
T 2kz7_C 71 DEGVDEFFTK 80 (85)
T ss_dssp CCCCSSSSCC
T ss_pred hccHHHHHHh
Confidence 4557888863
Done!