Query 027770
Match_columns 219
No_of_seqs 55 out of 57
Neff 3.4
Searched_HMMs 13730
Date Tue Mar 26 01:35:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027770.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027770hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fpwa1 c.108.1.19 (A:3-163) H 44.4 19 0.0014 26.2 5.5 93 107-205 5-120 (161)
2 d2o2xa1 c.108.1.19 (A:8-216) H 43.5 24 0.0017 26.7 6.1 74 110-189 29-114 (209)
3 d1ixka_ c.66.1.38 (A:) Hypothe 33.5 6.5 0.00048 32.2 1.3 62 109-170 195-264 (313)
4 d1sqga2 c.66.1.38 (A:145-428) 32.2 5.8 0.00042 31.9 0.7 66 108-173 180-253 (284)
5 d1xpja_ c.108.1.18 (A:) Hypoth 31.8 56 0.004 23.4 6.2 72 105-184 2-85 (124)
6 d1q92a_ c.108.1.8 (A:) 5'(3')- 30.2 20 0.0014 25.9 3.4 77 127-215 72-153 (195)
7 d2obba1 c.108.1.25 (A:1-122) H 28.4 86 0.0063 22.0 6.7 60 106-169 2-61 (122)
8 d1zcca1 c.1.18.3 (A:1-240) Gly 25.5 30 0.0022 25.7 3.8 57 139-204 96-152 (240)
9 d2abqa1 c.72.1.1 (A:1-306) Fru 21.5 63 0.0046 24.1 5.0 39 134-173 39-78 (306)
10 d1vd6a1 c.1.18.3 (A:8-224) Put 20.6 46 0.0033 23.5 3.8 60 138-204 78-140 (217)
No 1
>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}
Probab=44.45 E-value=19 Score=26.20 Aligned_cols=93 Identities=15% Similarity=0.230 Sum_probs=50.4
Q ss_pred EEEeecceeeccCChhh---hhccceeehhHHHHHHHHhhc-CceEEEEEee-------chhhH----HHHHHHHHHcCC
Q 027770 107 VTCRLLGVILEESCPEE---LQKQVTVKSSVLEALLEITKF-CDLYLMERVL-------DNESE----KKVLLALETAGV 171 (219)
Q Consensus 107 vTis~~gvvlee~sp~e---l~~~a~v~esalevLleLsk~-~DlYLm~~V~-------dD~eE----~~Vl~~Le~~Gl 171 (219)
|=+=..||+.++..... .-++..+.+.++|.|.+|.+- +.+++++.-. +-++- ..+...|+..
T Consensus 5 i~~D~DGtL~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~i~TNq~~ia~~~~~~~~~~~~~~~l~~~l~~~-- 82 (161)
T d2fpwa1 5 LFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQ-- 82 (161)
T ss_dssp EEECCBTTTBCCC--CCCCCSGGGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTSTTSCHHHHHHHHHHHHHHHHHT--
T ss_pred EEEeCCCCeEeeCCCCCccCCHHHceECccHHHHHHHHHHcCCceeeecccccchhHHHHHHHhhhhhhhhhhhcccc--
Confidence 33445677766543211 113567889999999999875 6666655311 11122 2345556663
Q ss_pred CCCCCCccceEEeeecCcCc--------cceeeecccceeec
Q 027770 172 FTSGGLVKDKVLFCSTEIGR--------TSFVRQLEPDWHID 205 (219)
Q Consensus 172 F~~gGL~rHKVLFCST~~Gr--------~sfVRQLeP~lHID 205 (219)
|+..+.+.||+...+. ..|+.++.=.+.||
T Consensus 83 ----~~~~~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~~~id 120 (161)
T d2fpwa1 83 ----GVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQAMD 120 (161)
T ss_dssp ----TCCEEEEEEECCCGGGCCSSSTTSSGGGGGGC----CC
T ss_pred ----ccccceeeeccccccccccccccccHHHHHHHHhcCCC
Confidence 5555899999765443 34454444444443
No 2
>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}
Probab=43.50 E-value=24 Score=26.74 Aligned_cols=74 Identities=19% Similarity=0.240 Sum_probs=45.8
Q ss_pred eecceeeccCChhhhhccceeehhHHHHHHHHhhc-CceEEEEEee-------c----hhhHHHHHHHHHHcCCCCCCCC
Q 027770 110 RLLGVILEESCPEELQKQVTVKSSVLEALLEITKF-CDLYLMERVL-------D----NESEKKVLLALETAGVFTSGGL 177 (219)
Q Consensus 110 s~~gvvlee~sp~el~~~a~v~esalevLleLsk~-~DlYLm~~V~-------d----D~eE~~Vl~~Le~~GlF~~gGL 177 (219)
=..|||..+..+-...+.+.+.+.+.|.|.+|.+. +.+++++--. + +.=.+.++..|+..|++-
T Consensus 29 DrDGtl~~~~~y~~~~~~~~l~pgv~e~L~~L~~~G~~l~IvTNQ~gi~~g~~~~~~~~~~~~~~~~~l~~~g~~~---- 104 (209)
T d2o2xa1 29 DRDGTINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVFV---- 104 (209)
T ss_dssp CSBTTTBCCCSCTTCGGGCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCCC----
T ss_pred eCCCCeECCCCCCCCHHHeEecccHHHHHHHHHhhCCeEEEecccccchhhhhhhhhhhhhhhHHHHHhhhccccc----
Confidence 45566655433322234678999999999999775 6666655310 1 111255677777866655
Q ss_pred ccceEEeeecCc
Q 027770 178 VKDKVLFCSTEI 189 (219)
Q Consensus 178 ~rHKVLFCST~~ 189 (219)
..+.+|....
T Consensus 105 --~~~~~~~~~~ 114 (209)
T d2o2xa1 105 --DMVLACAYHE 114 (209)
T ss_dssp --SEEEEECCCT
T ss_pred --ceEEEecccc
Confidence 7888887543
No 3
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=33.53 E-value=6.5 Score=32.19 Aligned_cols=62 Identities=21% Similarity=0.171 Sum_probs=41.3
Q ss_pred Eeeccee------eccCChhhhhccceeehhHHHHHHHHhhcC--ceEEEEEeechhhHHHHHHHHHHcC
Q 027770 109 CRLLGVI------LEESCPEELQKQVTVKSSVLEALLEITKFC--DLYLMERVLDNESEKKVLLALETAG 170 (219)
Q Consensus 109 is~~gvv------lee~sp~el~~~a~v~esalevLleLsk~~--DlYLm~~V~dD~eE~~Vl~~Le~~G 170 (219)
||-.|++ .|+.+++++.+.+....+.++.-..+.+-- =||--|.+.-.|.|++|..+|++.+
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~~~~ 264 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD 264 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSS
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHhcCC
Confidence 5666665 233445555555555555555555555543 5899999999999999999999865
No 4
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.23 E-value=5.8 Score=31.94 Aligned_cols=66 Identities=20% Similarity=0.222 Sum_probs=42.4
Q ss_pred EEeecceee------ccCChhhhhccceeehhHHHHHHHHhhc--CceEEEEEeechhhHHHHHHHHHHcCCCC
Q 027770 108 TCRLLGVIL------EESCPEELQKQVTVKSSVLEALLEITKF--CDLYLMERVLDNESEKKVLLALETAGVFT 173 (219)
Q Consensus 108 Tis~~gvvl------ee~sp~el~~~a~v~esalevLleLsk~--~DlYLm~~V~dD~eE~~Vl~~Le~~GlF~ 173 (219)
-||-.|++- |..+++++.+........++...++.+. .=||--|.+...|.|++|..+|++.+-|.
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~ 253 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAE 253 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCE
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcE
Confidence 367777652 2233444444444444444444444443 36899999999999999999999855443
No 5
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=31.75 E-value=56 Score=23.39 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=50.2
Q ss_pred eeEEEeecceeeccCChhhhhccceeehhHHHHHHHHhhc-CceEEEEEee-----------chhhHHHHHHHHHHcCCC
Q 027770 105 RKVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKF-CDLYLMERVL-----------DNESEKKVLLALETAGVF 172 (219)
Q Consensus 105 RkvTis~~gvvlee~sp~el~~~a~v~esalevLleLsk~-~DlYLm~~V~-----------dD~eE~~Vl~~Le~~GlF 172 (219)
++++|-+.|||.+....+ -.++...+.+++.|-+|-+. ..+++++-=. .+.-.+...+-|++
T Consensus 2 K~i~~DiDGTI~~~~~~~--y~~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~---- 75 (124)
T d1xpja_ 2 KKLIVDLDGTLTQANTSD--YRNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDK---- 75 (124)
T ss_dssp CEEEECSTTTTBCCCCSC--GGGCCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHH----
T ss_pred CEEEEeCCCCeECCCCCC--cCccCcCHHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHH----
Confidence 578999999998754432 35678899999999999544 6666665321 12234566777777
Q ss_pred CCCCCccceEEe
Q 027770 173 TSGGLVKDKVLF 184 (219)
Q Consensus 173 ~~gGL~rHKVLF 184 (219)
. |++=|+++|
T Consensus 76 -~-gI~Yd~Li~ 85 (124)
T d1xpja_ 76 -H-QVPYDEILV 85 (124)
T ss_dssp -T-TCCCSEEEE
T ss_pred -c-CCCceEEEE
Confidence 3 666799988
No 6
>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.20 E-value=20 Score=25.94 Aligned_cols=77 Identities=17% Similarity=0.267 Sum_probs=48.6
Q ss_pred cceeehhHHHHHHHHhhc--CceEEEEEeechh---hHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccc
Q 027770 127 QVTVKSSVLEALLEITKF--CDLYLMERVLDNE---SEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPD 201 (219)
Q Consensus 127 ~a~v~esalevLleLsk~--~DlYLm~~V~dD~---eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~ 201 (219)
+....+.++|+|-+|+.. .++|+++...... .+++.. -|++. | +++...+++||-. ++ .+..+
T Consensus 72 ~L~p~~gA~e~l~~L~~~~~~~v~i~t~~~~~~~~~~~~k~~-Wl~~~--~--~~~~~~~~~~t~~-K~------~~~~d 139 (195)
T d1q92a_ 72 ELEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYA-WVEKY--F--GPDFLEQIVLTRD-KT------VVSAD 139 (195)
T ss_dssp TCCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHHHHHH-HHHHH--H--CGGGGGGEEECSC-ST------TSCCS
T ss_pred hCCcccCHHHHHHHHhhccCccceEEccccccCcchHHHHHH-HHHHh--c--CCCCccEEEEccc-cc------eecCe
Confidence 456789999999999875 4667666654332 123333 34432 1 2455578888753 32 34678
Q ss_pred eeecCCHHHHHhhh
Q 027770 202 WHIDTNPEIVSQLA 215 (219)
Q Consensus 202 lHIDtd~~vv~~L~ 215 (219)
+.||-.++.+..+.
T Consensus 140 ~lIDD~p~n~~~~~ 153 (195)
T d1q92a_ 140 LLIDDRPDITGAEP 153 (195)
T ss_dssp EEEESCSCCCCSCS
T ss_pred EEecCcHHHHHHHh
Confidence 99998887766543
No 7
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=28.41 E-value=86 Score=21.98 Aligned_cols=60 Identities=13% Similarity=0.085 Sum_probs=43.5
Q ss_pred eEEEeecceeeccCChhhhhccceeehhHHHHHHHHhhcCceEEEEEeechhhHHHHHHHHHHc
Q 027770 106 KVTCRLLGVILEESCPEELQKQVTVKSSVLEALLEITKFCDLYLMERVLDNESEKKVLLALETA 169 (219)
Q Consensus 106 kvTis~~gvvlee~sp~el~~~a~v~esalevLleLsk~~DlYLm~~V~dD~eE~~Vl~~Le~~ 169 (219)
+++|=+.|+|.+.+.++. ..-.+.+++.|.+|-+.-.-..+..-..+...+...+-|++-
T Consensus 2 ti~vDiDGTl~~~~~~~~----~kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~ 61 (122)
T d2obba1 2 TIAVDFDGTIVEHRYPRI----GEEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRAR 61 (122)
T ss_dssp EEEECCBTTTBCSCTTSC----CCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCcCCCCCCcc----ccccHHHHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHc
Confidence 578889999987666543 445789999999997774433445566666667777778873
No 8
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]}
Probab=25.47 E-value=30 Score=25.68 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=38.9
Q ss_pred HHHhhcCceEEEEEeechhhHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccceee
Q 027770 139 LEITKFCDLYLMERVLDNESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (219)
Q Consensus 139 leLsk~~DlYLm~~V~dD~eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lHI 204 (219)
+++.+. ++.++.-+.++. ++.+..++++.|.. ++|+|+|-..-...-+|++.|.+.+
T Consensus 96 l~~~~~-~~~l~iEiK~~~-~~~v~~l~~~~~~~-------~~v~~~Sf~~~~l~~~~~~~P~~~~ 152 (240)
T d1zcca1 96 LEHLRG-RAGVYIELKYCD-PAKVAALVRHLGMV-------RDTFYFSFSEEMRQGLQSIAPEFRR 152 (240)
T ss_dssp HHHHTT-TCEEEEEEEESC-HHHHHHHHHHHTCS-------TTEEEECSCHHHHHHHHHHCTTSEE
T ss_pred hhcccc-cceeEEEEccCc-chhhhHHHHHHHhh-------cccccccccHHHHHHHHHhhhccce
Confidence 344442 344555666654 56788999997653 4799999877777778888887653
No 9
>d2abqa1 c.72.1.1 (A:1-306) Fructose 1-phosphate kinase FruB {Bacillus halodurans [TaxId: 86665]}
Probab=21.46 E-value=63 Score=24.10 Aligned_cols=39 Identities=10% Similarity=-0.047 Sum_probs=30.7
Q ss_pred HHHHHHHHhhc-CceEEEEEeechhhHHHHHHHHHHcCCCC
Q 027770 134 VLEALLEITKF-CDLYLMERVLDNESEKKVLLALETAGVFT 173 (219)
Q Consensus 134 alevLleLsk~-~DlYLm~~V~dD~eE~~Vl~~Le~~GlF~ 173 (219)
+..+..-|++. .++++|..|-+| +-+.+++.|++.|+=.
T Consensus 39 ~~N~A~~l~~lG~~~~~ig~vG~D-~g~~i~~~L~~~gi~~ 78 (306)
T d2abqa1 39 GINVSRVLKRLGHETKALGFLGGF-TGAYVRNALEKEEIGL 78 (306)
T ss_dssp HHHHHHHHHHTTCCCEEEEEEEHH-HHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCEEEEEEecCc-cHHHHHHHHHhccccc
Confidence 45566666666 799999999988 4678999999988744
No 10
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]}
Probab=20.62 E-value=46 Score=23.49 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=38.1
Q ss_pred HHHHh-hcCceEEEEEeech--hhHHHHHHHHHHcCCCCCCCCccceEEeeecCcCccceeeecccceee
Q 027770 138 LLEIT-KFCDLYLMERVLDN--ESEKKVLLALETAGVFTSGGLVKDKVLFCSTEIGRTSFVRQLEPDWHI 204 (219)
Q Consensus 138 LleLs-k~~DlYLm~~V~dD--~eE~~Vl~~Le~~GlF~~gGL~rHKVLFCST~~Gr~sfVRQLeP~lHI 204 (219)
++++. ..-++++..-+.++ ..+..+..+++..+ ..++++|||-.......+|++.|.+.+
T Consensus 78 ~l~~~~~~~~~~~~ie~K~~~~~~~~~~~~l~~~~~-------~~~~v~~~Sf~~~~l~~~~~~~p~~~~ 140 (217)
T d1vd6a1 78 VLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLR-------GREGVWVSSFDPLALLALRKAAPGLPL 140 (217)
T ss_dssp HHGGGGTCTTCEEEEEECCCTTSHHHHHHHHHHHTT-------TCSSEEEEESCHHHHHHHHHHCTTSCE
T ss_pred HHHHHHhCCCceeeeeeccCcchhHHHHHHHHHHhh-------ccceEEEeeccHHHHHHHHHHhccCce
Confidence 44444 33577776666653 34455556666533 236799999887777777888777653
Done!