Query 027772
Match_columns 219
No_of_seqs 207 out of 1318
Neff 6.4
Searched_HMMs 29240
Date Tue Mar 26 01:39:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 2.9E-56 9.9E-61 376.5 12.7 175 7-185 23-200 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.8E-55 6.2E-60 364.8 10.9 169 13-185 2-170 (176)
3 3h16_A TIR protein; bacteria T 100.0 2.7E-36 9.4E-41 243.4 3.1 137 14-158 15-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 2.3E-30 7.9E-35 208.0 -1.3 133 13-155 4-145 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 2.9E-26 9.9E-31 184.2 2.7 106 16-123 2-111 (149)
6 1t3g_A X-linked interleukin-1 99.9 4.4E-25 1.5E-29 179.4 6.4 102 18-119 1-114 (159)
7 2js7_A Myeloid differentiation 99.9 2.2E-25 7.5E-30 181.3 4.5 104 14-119 11-117 (160)
8 2j67_A TOLL like receptor 10; 99.9 3.6E-25 1.2E-29 183.1 4.4 107 14-122 30-140 (178)
9 3j0a_A TOLL-like receptor 5; m 99.7 1.3E-18 4.5E-23 170.7 7.4 104 15-120 666-775 (844)
10 1eiw_A Hypothetical protein MT 97.9 6.8E-06 2.3E-10 62.7 4.0 72 18-114 3-74 (111)
11 3hyn_A Putative signal transdu 97.0 0.0035 1.2E-07 51.6 9.2 89 34-127 32-130 (189)
12 2khz_A C-MYC-responsive protei 83.9 6.6 0.00023 30.8 8.9 88 17-113 9-109 (165)
13 2f62_A Nucleoside 2-deoxyribos 83.2 6.3 0.00022 31.1 8.5 75 34-113 27-104 (161)
14 4fyk_A Deoxyribonucleoside 5'- 77.8 12 0.0004 29.4 8.3 85 21-114 4-101 (152)
15 2yvq_A Carbamoyl-phosphate syn 67.9 12 0.0004 28.6 6.0 62 22-85 27-106 (143)
16 3ehd_A Uncharacterized conserv 63.4 39 0.0013 26.6 8.4 75 34-114 20-104 (162)
17 2d00_A V-type ATP synthase sub 53.1 52 0.0018 24.0 7.1 44 40-87 15-58 (109)
18 2jug_A TUBC protein; docking d 48.0 11 0.00039 25.7 2.5 40 36-75 7-49 (78)
19 2i4r_A V-type ATP synthase sub 44.2 54 0.0019 23.7 5.8 45 40-87 21-65 (102)
20 3aon_B V-type sodium ATPase su 41.5 24 0.0008 26.2 3.5 61 42-113 16-76 (115)
21 1wu7_A Histidyl-tRNA synthetas 31.6 1.1E+02 0.0039 26.9 7.1 59 19-83 332-391 (434)
22 1s2d_A Purine trans deoxyribos 31.0 1.9E+02 0.0064 22.5 8.6 85 21-113 9-115 (167)
23 2i4l_A Proline-tRNA ligase; al 28.5 38 0.0013 30.6 3.4 61 19-84 365-428 (458)
24 1evl_A Threonyl-tRNA synthetas 27.9 1.2E+02 0.004 26.6 6.4 60 19-83 298-357 (401)
25 3net_A Histidyl-tRNA synthetas 27.6 99 0.0034 27.9 6.0 62 18-84 370-431 (465)
26 1byr_A Protein (endonuclease); 27.3 1.8E+02 0.0061 21.1 6.9 26 60-85 12-37 (155)
27 4g84_A Histidine--tRNA ligase, 26.5 1.4E+02 0.0049 26.3 6.8 62 17-82 364-425 (464)
28 4h3d_A 3-dehydroquinate dehydr 26.4 82 0.0028 26.3 4.9 65 38-104 103-167 (258)
29 1v95_A Nuclear receptor coacti 26.3 1.2E+02 0.0042 22.9 5.4 48 32-81 20-67 (130)
30 4g85_A Histidine-tRNA ligase, 25.3 1.7E+02 0.0057 26.6 7.2 62 17-82 417-478 (517)
31 1sc3_B Interleukin-1 beta conv 24.6 23 0.00079 24.9 0.9 25 23-47 21-45 (88)
32 3hjn_A DTMP kinase, thymidylat 23.7 86 0.003 24.6 4.3 31 23-53 2-34 (197)
33 3lc0_A Histidyl-tRNA synthetas 23.6 1.5E+02 0.0052 26.7 6.5 60 18-82 360-419 (456)
34 1qe0_A Histidyl-tRNA synthetas 22.8 94 0.0032 27.2 4.8 61 18-83 328-388 (420)
35 3ikl_A DNA polymerase subunit 22.4 77 0.0026 29.1 4.2 66 17-86 348-416 (459)
36 2ql9_B Caspase-7; cysteine pro 21.5 27 0.00091 24.8 0.7 25 23-47 23-47 (97)
37 1htt_A Histidyl-tRNA synthetas 21.2 1.4E+02 0.0046 26.2 5.5 60 18-82 326-387 (423)
38 1qtn_B Caspase-8; apoptosis, d 21.1 25 0.00087 24.9 0.5 29 19-47 12-49 (95)
39 1bax_A M-PMV MA, M-PMV matrix 20.7 51 0.0018 23.8 2.1 19 33-51 9-27 (94)
40 1f8y_A Nucleoside 2-deoxyribos 20.7 2.5E+02 0.0085 21.5 6.3 85 21-113 5-112 (157)
41 1nj1_A PROR, proline-tRNA synt 20.3 75 0.0025 29.2 3.7 60 19-83 314-378 (501)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=2.9e-56 Score=376.50 Aligned_cols=175 Identities=37% Similarity=0.652 Sum_probs=151.7
Q ss_pred CCCCCCCCCCCCeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccC
Q 027772 7 SSSSTHHQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA 86 (219)
Q Consensus 7 ~~sssss~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~ 86 (219)
+|+++|++++.++|||||||||+|+|++|++||+++|+++||++|+|++++++|+.|.++|.+||++|+++|+|||+||+
T Consensus 23 ~s~~~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa 102 (204)
T 3ozi_A 23 DSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYA 102 (204)
T ss_dssp -----------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGG
T ss_pred cCCCCcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccc
Confidence 34556778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHhccc-cCCCeEEEEEeeeCCcccccccccchHHHHHHHHHHhccChHHHHHHHHHHHHhhccccee
Q 027772 87 SSPWCLDELAKIVECGNK-RKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWH 165 (219)
Q Consensus 87 ~S~wCl~EL~~i~~~~~~-~~~~~ViPVFy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~Wr~AL~~va~~~G~~ 165 (219)
+|+||++||++|++| .+ .++++||||||+|+|++||+|+| .||++|.+|++++. ++++++||.||++||+++||+
T Consensus 103 ~S~WCl~EL~~I~e~-~~~~~~~~ViPIFY~VdPs~Vr~q~g-~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~ 178 (204)
T 3ozi_A 103 DSKWCLMELAEIVRR-QEEDPRRIILPIFYMVDPSDVRHQTG-CYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWH 178 (204)
T ss_dssp GCHHHHHHHHHHHHH-HHHCTTSEECCEEESSCHHHHHHTCT-THHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEE
T ss_pred cCcHHHHHHHHHHHH-HHhcCCeeeEEEEeecCHHHHHhccc-cHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCcee
Confidence 999999999999999 54 46899999999999999999999 99999999998864 689999999999999999999
Q ss_pred ecCCch--hHHHHHHHhhhhhh
Q 027772 166 LQDRFF--PLIYLLLFNYLFTL 185 (219)
Q Consensus 166 ~~~~~~--~~~~~~~~~~~~~~ 185 (219)
+.++.. .++.+|+.++...+
T Consensus 179 ~~~~~~e~~~i~~Iv~di~~kl 200 (204)
T 3ozi_A 179 IGKNDKQGAIADKVSADIWSHI 200 (204)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHh
Confidence 998743 34566666665543
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.8e-55 Score=364.79 Aligned_cols=169 Identities=43% Similarity=0.660 Sum_probs=139.6
Q ss_pred CCCCCCeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHH
Q 027772 13 HQILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL 92 (219)
Q Consensus 13 s~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl 92 (219)
|++.+++|||||||||+|+|++|++||+++|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||+
T Consensus 2 sss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl 81 (176)
T 3jrn_A 2 SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCL 81 (176)
T ss_dssp -----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHH
T ss_pred CCCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCeEEEEEeeeCCcccccccccchHHHHHHHHHHhccChHHHHHHHHHHHHhhcccceeecCCchh
Q 027772 93 DELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTVASLAGWHLQDRFFP 172 (219)
Q Consensus 93 ~EL~~i~~~~~~~~~~~ViPVFy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~Wr~AL~~va~~~G~~~~~~~~~ 172 (219)
+||++|++| .+.++++||||||+|+|++||+|+| .||++|.+|+++ .+.+++++||.||++||+++||++..++..
T Consensus 82 ~EL~~i~~~-~~~~~~~ViPIfy~V~ps~Vr~q~g-~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~~~e~~ 157 (176)
T 3jrn_A 82 DELVTIMDF-EKKGSITVMPIFYGVEPNHVRWQTG-VLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSGDDDSK 157 (176)
T ss_dssp HHHHHHHHH-HHTTSCEEEEEECSSCHHHHHHTCT-HHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECCSCHHH
T ss_pred HHHHHHHhh-hccCCCEEEEEEecCCHHHhhhccC-cHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecCCCHHH
Confidence 999999999 7888999999999999999999999 999999999987 467999999999999999999999766566
Q ss_pred HHHHHHHhhhhhh
Q 027772 173 LIYLLLFNYLFTL 185 (219)
Q Consensus 173 ~~~~~~~~~~~~~ 185 (219)
++.+|+.++...+
T Consensus 158 ~i~~Iv~~v~~~l 170 (176)
T 3jrn_A 158 LVDKIANEISNKK 170 (176)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666544
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=2.7e-36 Score=243.42 Aligned_cols=137 Identities=20% Similarity=0.325 Sum_probs=119.4
Q ss_pred CCCCCeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHHH
Q 027772 14 QILQSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLD 93 (219)
Q Consensus 14 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~ 93 (219)
..+.++|||||||+++| +..|+.+|+.+|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|++|.||++
T Consensus 15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~ 93 (154)
T 3h16_A 15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK 93 (154)
T ss_dssp ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence 46789999999999999 66899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCCeEEEEEeeeCCcccccccccchHHHHHHHHHHhccChHHHHHHHHHHHHh
Q 027772 94 ELAKIVECGNKRKDRKVFAVFYGVDPADVRKQKGEDFERVFAKYEEEFKENHEKVLKWRAALTTV 158 (219)
Q Consensus 94 EL~~i~~~~~~~~~~~ViPVFy~v~psdVr~q~g~~f~~~f~~~~~~~~~~~~~v~~Wr~AL~~v 158 (219)
||..|++| ...++++||||||+|+|++|++|.| .|+++|...... ..+.++-+.|.++
T Consensus 94 El~~~~~~-~~~~~~~iiPV~~~v~p~~v~~~~~-~~~~~~~~~~~~-----~~~~~ia~~l~~l 151 (154)
T 3h16_A 94 ELDGLFQL-ESSGRSRILPIWHKVSKDEVASFSP-TMADKLAFNTST-----KSVDEIVADLMAI 151 (154)
T ss_dssp HHHHHTCC-CTTSCCCEEEEEESCCTGGGTTTCC-CCCSSCCEETTT-----SCHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCCCEEEEEEecCCHHHHhhCCc-cHHHHHhhhcCc-----ccHHHHHHHHHHH
Confidence 99999998 7777889999999999999999999 999888644322 2355555555443
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.95 E-value=2.3e-30 Score=207.99 Aligned_cols=133 Identities=19% Similarity=0.305 Sum_probs=94.4
Q ss_pred CCCCCCeeeEEEecccccCccchHHHHHHHHHc--CCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChh
Q 027772 13 HQILQSKYDVFLSFRGEDTRNNFTDNLHTALIR--NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPW 90 (219)
Q Consensus 13 s~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~--~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~w 90 (219)
|....+.|||||||+++|+ .||.+|+.+|++ .|+++|+|++++.+|+.+.++|.++|++|+++|+|+|+||++|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 3556789999999999996 489999999998 599999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCeEEEEEeeeCCccc----cccccc---chHHHHHHHHHHhccChHHHHHHHHHH
Q 027772 91 CLDELAKIVECGNKRKDRKVFAVFYGVDPADV----RKQKGE---DFERVFAKYEEEFKENHEKVLKWRAAL 155 (219)
Q Consensus 91 Cl~EL~~i~~~~~~~~~~~ViPVFy~v~psdV----r~q~g~---~f~~~f~~~~~~~~~~~~~v~~Wr~AL 155 (219)
|+.|+..|+.+ ...+..+||||||+|+++++ +..... ...+.|.++ .+.|.+|+.||
T Consensus 82 c~~El~~al~~-~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l-------~~~v~~~~~~~ 145 (146)
T 3ub2_A 82 CKYQMLQALTE-APGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQV-------KEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHT-SSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHH-------HHHHHHHHTTC
T ss_pred HHHHHHHHHHH-HhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHH-------HHHHHHHHHhc
Confidence 99999999998 43334478899999986554 444321 223444433 37789998875
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.92 E-value=2.9e-26 Score=184.25 Aligned_cols=106 Identities=19% Similarity=0.295 Sum_probs=94.3
Q ss_pred CCCeeeEEEecccccCccchHHH-HHHHHHcC--CeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHH
Q 027772 16 LQSKYDVFLSFRGEDTRNNFTDN-LHTALIRN--GFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCL 92 (219)
Q Consensus 16 ~~~~yDVFISfrg~D~r~~Fv~~-L~~aL~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl 92 (219)
.++.|||||||+++|+ .||.+ |+.+|+++ |+++|+|++++.+|+.+.++|.++|++|+++|+|+|+||++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 3578999999999996 79986 99999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCCCeEEEEEee-eCCcccc
Q 027772 93 DELAKIVECGNKRKDRKVFAVFYG-VDPADVR 123 (219)
Q Consensus 93 ~EL~~i~~~~~~~~~~~ViPVFy~-v~psdVr 123 (219)
.||..|+.+..+.+++.||||||+ +++.++.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999999864356677889999996 5554443
No 6
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.91 E-value=4.4e-25 Score=179.38 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=91.7
Q ss_pred CeeeEEEecccccC---------ccchHHHHHH-HHH-cCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccC
Q 027772 18 SKYDVFLSFRGEDT---------RNNFTDNLHT-ALI-RNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYA 86 (219)
Q Consensus 18 ~~yDVFISfrg~D~---------r~~Fv~~L~~-aL~-~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~ 86 (219)
+.|||||||+++|+ ++.||.+|.. .|+ +.|+++|+|++|+.+|+.+.++|.++|++|+.+|+|+|+||+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 4679999776 699 799999999999999999999999999999999999999997
Q ss_pred -CChhHHHHHHHHHHhccccCCCeEEEEEeeeCC
Q 027772 87 -SSPWCLDELAKIVECGNKRKDRKVFAVFYGVDP 119 (219)
Q Consensus 87 -~S~wCl~EL~~i~~~~~~~~~~~ViPVFy~v~p 119 (219)
.|.||+.|+..++.+....+++.||||+|.-.+
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~ 114 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR 114 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence 999999999999998556778899999987444
No 7
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.91 E-value=2.2e-25 Score=181.34 Aligned_cols=104 Identities=16% Similarity=0.246 Sum_probs=93.3
Q ss_pred CCCCCeeeEEEecccccCccchHHHHHHHHHcC--CeeeEecCCCCcCCccchHHHHHHHH-hcCceEEEEecccCCChh
Q 027772 14 QILQSKYDVFLSFRGEDTRNNFTDNLHTALIRN--GFIAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSKNYASSPW 90 (219)
Q Consensus 14 ~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI~-~S~~~IvV~S~ny~~S~w 90 (219)
...++.|||||||+++| ..||.+|+.+|+++ |+++|+|++++.+|+.+.++|.++|+ +|+++|+|+|++|++|.|
T Consensus 11 ~~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w 88 (160)
T 2js7_A 11 GHMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE 88 (160)
T ss_dssp SCCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred CCCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence 34467899999999999 47999999999985 69999999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHhccccCCCeEEEEEeeeCC
Q 027772 91 CLDELAKIVECGNKRKDRKVFAVFYGVDP 119 (219)
Q Consensus 91 Cl~EL~~i~~~~~~~~~~~ViPVFy~v~p 119 (219)
|+.|+..|+++..+.++++||||||+.-+
T Consensus 89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~ 117 (160)
T 2js7_A 89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK 117 (160)
T ss_dssp HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence 99999999988445556799999998543
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.90 E-value=3.6e-25 Score=183.14 Aligned_cols=107 Identities=19% Similarity=0.312 Sum_probs=89.9
Q ss_pred CCCCCeeeEEEecccccCccchHH-HHHHHHHc--CCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChh
Q 027772 14 QILQSKYDVFLSFRGEDTRNNFTD-NLHTALIR--NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPW 90 (219)
Q Consensus 14 ~~~~~~yDVFISfrg~D~r~~Fv~-~L~~aL~~--~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~w 90 (219)
...++.|||||||+++|+ .||. +|+.+|++ +|+++|+|++++.+|+.+.++|.++|++|+++|+|+||||++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 456789999999999995 7997 59999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCeEEEEEee-eCCccc
Q 027772 91 CLDELAKIVECGNKRKDRKVFAVFYG-VDPADV 122 (219)
Q Consensus 91 Cl~EL~~i~~~~~~~~~~~ViPVFy~-v~psdV 122 (219)
|+.||..|+++..+.++++||||||+ +.+.++
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~l 140 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYCI 140 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCCCGGGS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCCChHHC
Confidence 99999999976355667899999997 433333
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.74 E-value=1.3e-18 Score=170.68 Aligned_cols=104 Identities=19% Similarity=0.310 Sum_probs=94.1
Q ss_pred CCCCeeeEEEecccccCccchH-HHHHHHHHc-----CCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCC
Q 027772 15 ILQSKYDVFLSFRGEDTRNNFT-DNLHTALIR-----NGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASS 88 (219)
Q Consensus 15 ~~~~~yDVFISfrg~D~r~~Fv-~~L~~aL~~-----~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S 88 (219)
...+.|||||||+++|. .|| .+|...|+. .|+++|++++|+.+|+.+.++|.++|++||.+|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 35789999999999995 687 779999985 5899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhccccCCCeEEEEEeeeCCc
Q 027772 89 PWCLDELAKIVECGNKRKDRKVFAVFYGVDPA 120 (219)
Q Consensus 89 ~wCl~EL~~i~~~~~~~~~~~ViPVFy~v~ps 120 (219)
.||..|+..++.+..++++++||||||+..|.
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99999999999875677788999999975443
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=97.92 E-value=6.8e-06 Score=62.69 Aligned_cols=72 Identities=10% Similarity=0.128 Sum_probs=53.7
Q ss_pred CeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHHHHHHH
Q 027772 18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAK 97 (219)
Q Consensus 18 ~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~EL~~ 97 (219)
..|.|||||..+| . .+.|...|.+.|+. |.| +.|+.|++.||+.++...+|+||..|+..
T Consensus 3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~-~~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVE-D---YRVFLERLEQSGLE-WRP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSH-H---HHHHHHHHHHHCSC-EEE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHh-H---HHHHHHHHhCCCCe-eec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 4799999999998 2 33444444444553 223 56889999999999999999999999988
Q ss_pred HHHhccccCCCeEEEEE
Q 027772 98 IVECGNKRKDRKVFAVF 114 (219)
Q Consensus 98 i~~~~~~~~~~~ViPVF 114 (219)
+.+. +..|+-|.
T Consensus 63 A~~~-----gkpIigV~ 74 (111)
T 1eiw_A 63 ARKS-----SKPIITVR 74 (111)
T ss_dssp HTTT-----TCCEEEEC
T ss_pred HHHc-----CCCEEEEE
Confidence 7544 66777665
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=97.01 E-value=0.0035 Score=51.63 Aligned_cols=89 Identities=17% Similarity=0.195 Sum_probs=66.2
Q ss_pred chHHHHHHHHHcCCeeeEecCCCC----c---C-CccchHHHHHHHHhcCceEEEEecccCCChhHHHHHHHHH-Hhccc
Q 027772 34 NFTDNLHTALIRNGFIAFKDDETL----D---R-GNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIV-ECGNK 104 (219)
Q Consensus 34 ~Fv~~L~~aL~~~Gi~vf~D~~~l----~---~-G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~EL~~i~-~~~~~ 104 (219)
.+.+.|..--.+..+-.|.|-++. . . -..|...|.+.|..|+.+|+++|++...|.|-..|+..++ ++
T Consensus 32 ~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~--- 108 (189)
T 3hyn_A 32 VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGTK--- 108 (189)
T ss_dssp HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTT---
T ss_pred HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhc---
Confidence 456667666666666677775444 2 2 2357889999999999999999999999999999999997 55
Q ss_pred cCCCeEEEEEeeeC-Ccccccccc
Q 027772 105 RKDRKVFAVFYGVD-PADVRKQKG 127 (219)
Q Consensus 105 ~~~~~ViPVFy~v~-psdVr~q~g 127 (219)
+.+||-|..+-. .+++..-.|
T Consensus 109 --~~PII~Vy~~~~~~~~i~~~~g 130 (189)
T 3hyn_A 109 --GLPVIVIYPDYDKKSDIVDSNG 130 (189)
T ss_dssp --CCCEEEEETTCCSGGGTBCTTS
T ss_pred --CCcEEEEECCccccchhhhccc
Confidence 788888875533 335554344
No 12
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=83.89 E-value=6.6 Score=30.79 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=56.3
Q ss_pred CCeeeEEEec--ccccCccchHHHHHHHHHcCCeeeEecCCC----CcCCc-------cchHHHHHHHHhcCceEEEEec
Q 027772 17 QSKYDVFLSF--RGEDTRNNFTDNLHTALIRNGFIAFKDDET----LDRGN-------EISSELSKAIEESNVSIVILSK 83 (219)
Q Consensus 17 ~~~yDVFISf--rg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~----l~~G~-------~i~~~i~~aI~~S~~~IvV~S~ 83 (219)
+.+..|||+= .+..........+.+.|++.| .|+.+..- -..|. .+...-.+.|++|++.|+++.
T Consensus 9 ~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~- 86 (165)
T 2khz_A 9 QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT- 86 (165)
T ss_dssp CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS-
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC-
Confidence 3346799973 222111224588999999999 77654311 11221 122333578999999999997
Q ss_pred ccCCChhHHHHHHHHHHhccccCCCeEEEE
Q 027772 84 NYASSPWCLDELAKIVECGNKRKDRKVFAV 113 (219)
Q Consensus 84 ny~~S~wCl~EL~~i~~~~~~~~~~~ViPV 113 (219)
-.+.-+..|+-.+... ++.|+-+
T Consensus 87 --~~d~Gt~~EiGyA~al-----gKPVi~l 109 (165)
T 2khz_A 87 --QPSLGVGYELGRAVAL-----GKPILCL 109 (165)
T ss_dssp --SCCHHHHHHHHHHHHT-----CSSEEEE
T ss_pred --CCCCCHHHHHHHHHHC-----CCEEEEE
Confidence 4567799999998776 6666644
No 13
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=83.19 E-value=6.3 Score=31.11 Aligned_cols=75 Identities=11% Similarity=0.142 Sum_probs=54.2
Q ss_pred chHHHHHHHHHcCCeeeEecCCC-CcCCccchHHHHHHHHhcCceEEEEec--ccCCChhHHHHHHHHHHhccccCCCeE
Q 027772 34 NFTDNLHTALIRNGFIAFKDDET-LDRGNEISSELSKAIEESNVSIVILSK--NYASSPWCLDELAKIVECGNKRKDRKV 110 (219)
Q Consensus 34 ~Fv~~L~~aL~~~Gi~vf~D~~~-l~~G~~i~~~i~~aI~~S~~~IvV~S~--ny~~S~wCl~EL~~i~~~~~~~~~~~V 110 (219)
.+...+.+.|++.|+.+|.-.++ ......|...-.++|++|++.|++++| .-..++-...|+-.+... ++.|
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~Al-----gKPV 101 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAAL-----NKMV 101 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHT-----TCEE
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHC-----CCEE
Confidence 68899999999999998874321 112334455557899999999999986 333445588899998776 6666
Q ss_pred EEE
Q 027772 111 FAV 113 (219)
Q Consensus 111 iPV 113 (219)
+-+
T Consensus 102 i~l 104 (161)
T 2f62_A 102 LTF 104 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 644
No 14
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=77.78 E-value=12 Score=29.43 Aligned_cols=85 Identities=19% Similarity=0.310 Sum_probs=55.3
Q ss_pred eEEEe--cccccCccchHHHHHHHHHcCCeeeEec---CCCC-cCCc-------cchHHHHHHHHhcCceEEEEecccCC
Q 027772 21 DVFLS--FRGEDTRNNFTDNLHTALIRNGFIAFKD---DETL-DRGN-------EISSELSKAIEESNVSIVILSKNYAS 87 (219)
Q Consensus 21 DVFIS--frg~D~r~~Fv~~L~~aL~~~Gi~vf~D---~~~l-~~G~-------~i~~~i~~aI~~S~~~IvV~S~ny~~ 87 (219)
.|||+ +++.+....+...+.+.|++.| .|+-. +.++ ..|+ .|...-.++|++|++.|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 46665 4453334467799999999999 67532 1111 1222 245556678999999999988 55
Q ss_pred ChhHHHHHHHHHHhccccCCCeEEEEE
Q 027772 88 SPWCLDELAKIVECGNKRKDRKVFAVF 114 (219)
Q Consensus 88 S~wCl~EL~~i~~~~~~~~~~~ViPVF 114 (219)
|.=...|+..+... ++.|+-++
T Consensus 80 d~Gt~~EiG~A~al-----gkPV~~l~ 101 (152)
T 4fyk_A 80 SLGVGYELGRAVAL-----GKPILCLF 101 (152)
T ss_dssp CHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred CCCHHHHHHHHHHc-----CCeEEEEE
Confidence 77788899998776 56666444
No 15
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=67.93 E-value=12 Score=28.62 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=37.4
Q ss_pred EEEecccccCccchHHHHHHHHHcCCeeeEecC--------C-----CC---cCC-c-cchHHHHHHHHhcCceEEEEec
Q 027772 22 VFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDD--------E-----TL---DRG-N-EISSELSKAIEESNVSIVILSK 83 (219)
Q Consensus 22 VFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~--------~-----~l---~~G-~-~i~~~i~~aI~~S~~~IvV~S~ 83 (219)
||||.+..| +.-+-.+.+.|...|++++--. . .+ ..| + .-.++|.+.|++-++.+||..+
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998766 2344567778888888877211 0 01 111 1 0004577777777777777766
Q ss_pred cc
Q 027772 84 NY 85 (219)
Q Consensus 84 ny 85 (219)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 16
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=63.38 E-value=39 Score=26.59 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=52.2
Q ss_pred chHHHHHHHHHcC--CeeeEecCCCC----cCCc----cchHHHHHHHHhcCceEEEEecccCCChhHHHHHHHHHHhcc
Q 027772 34 NFTDNLHTALIRN--GFIAFKDDETL----DRGN----EISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGN 103 (219)
Q Consensus 34 ~Fv~~L~~aL~~~--Gi~vf~D~~~l----~~G~----~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~EL~~i~~~~~ 103 (219)
.+...+.++|+++ |+.+|.-.++- .++. .|...=.++|++|++.|.++. ....+..+.-|+-.+...
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~-- 96 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAK-- 96 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHC--
Confidence 5788899999875 89988642211 1222 344444567999999999995 334678899999998876
Q ss_pred ccCCCeEEEEE
Q 027772 104 KRKDRKVFAVF 114 (219)
Q Consensus 104 ~~~~~~ViPVF 114 (219)
++.|+.+.
T Consensus 97 ---gkPVi~~~ 104 (162)
T 3ehd_A 97 ---GIPVVALY 104 (162)
T ss_dssp ---TCCEEEEC
T ss_pred ---CCEEEEEE
Confidence 56666553
No 17
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=53.14 E-value=52 Score=23.95 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=33.3
Q ss_pred HHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCC
Q 027772 40 HTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYAS 87 (219)
Q Consensus 40 ~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~ 87 (219)
...++..|+.+|.-. ..+.+...+.+.+++-++.|++++++.+.
T Consensus 15 v~GFrLaGi~~~~v~----~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 15 AQGFRLAGLEGYGAS----SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHHTTSEEEECS----SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHHcCCeEEEeC----CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 345677899888542 23556667777777889999999999988
No 18
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=47.98 E-value=11 Score=25.67 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=29.0
Q ss_pred HHHHHHHHHcCCeeeEecCCCCc---CCccchHHHHHHHHhcC
Q 027772 36 TDNLHTALIRNGFIAFKDDETLD---RGNEISSELSKAIEESN 75 (219)
Q Consensus 36 v~~L~~aL~~~Gi~vf~D~~~l~---~G~~i~~~i~~aI~~S~ 75 (219)
+..|...|+++||+.|.|.+.+. +-..+.+++...+.+.+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 34677899999999999987664 33456777777775543
No 19
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=44.17 E-value=54 Score=23.68 Aligned_cols=45 Identities=16% Similarity=0.367 Sum_probs=32.5
Q ss_pred HHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCC
Q 027772 40 HTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYAS 87 (219)
Q Consensus 40 ~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~ 87 (219)
...++..|+..+.+. ..-+.+...+.+.+++.++.|++++++.+.
T Consensus 21 v~GFrLaGi~~~~~~---~~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 21 TIGFMLAGISDIYEV---TSDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHHTTCCCEEEC---CSHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHHcCCCcccCC---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 345677898877622 122456667777777789999999999886
No 20
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=41.48 E-value=24 Score=26.24 Aligned_cols=61 Identities=8% Similarity=0.195 Sum_probs=38.5
Q ss_pred HHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHHHHHHHHHHhccccCCCeEEEE
Q 027772 42 ALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAV 113 (219)
Q Consensus 42 aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~~ViPV 113 (219)
.++..|+.+|.-. .-+.+...+.+.+++ ++.|++++++.+.. +.+++.. + ++.....|++|
T Consensus 16 GFrLaGie~~~v~----~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~-~---~~~~~P~IveI 76 (115)
T 3aon_B 16 PFRLFGFDVQHGT----TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER-Y---KGQLTPAIILI 76 (115)
T ss_dssp GGGGGTCEEECCC----SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH-H---HTSSSCEEEEE
T ss_pred HHHHcCCeEEEeC----CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH-H---hCCCCCEEEEE
Confidence 4566799887542 234566667777777 99999999998763 3344444 2 22224455555
No 21
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=31.62 E-value=1.1e+02 Score=26.94 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=38.2
Q ss_pred eeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHH-hcCceEEEEec
Q 027772 19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSK 83 (219)
Q Consensus 19 ~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~-~S~~~IvV~S~ 83 (219)
.+||+|-.-+++. ...+..|+..|++.|++|-+|.++ ..+...+..|-. ... .++|+.+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~-~~iiiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGAD-FAVIFGE 391 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCS-EEEEEEH
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCC-EEEEECc
Confidence 4889866555543 457889999999999999998743 344444444433 333 4455543
No 22
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=31.00 E-value=1.9e+02 Score=22.50 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=56.8
Q ss_pred eEEEe---cccccCccchHHHHHHHHHcC--CeeeEecCCC-C--------cCC--------ccchHHHHHHHHhcCceE
Q 027772 21 DVFLS---FRGEDTRNNFTDNLHTALIRN--GFIAFKDDET-L--------DRG--------NEISSELSKAIEESNVSI 78 (219)
Q Consensus 21 DVFIS---frg~D~r~~Fv~~L~~aL~~~--Gi~vf~D~~~-l--------~~G--------~~i~~~i~~aI~~S~~~I 78 (219)
.|||. |+..+ ......+.+.|++. |+.+|.-.++ . ..| ..|...=.++|++|++.|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 46665 33332 35789999999999 8888864321 1 111 123444456899999999
Q ss_pred EEEecccCCChhHHHHHHHHHHhccccCCCeEEEE
Q 027772 79 VILSKNYASSPWCLDELAKIVECGNKRKDRKVFAV 113 (219)
Q Consensus 79 vV~S~ny~~S~wCl~EL~~i~~~~~~~~~~~ViPV 113 (219)
.++...-. +.=+.-|+-.+... ++.|+-+
T Consensus 87 A~ldg~~~-D~GTa~EiGyA~al-----gKPVv~l 115 (167)
T 1s2d_A 87 FLYDMDQL-DDGSAFXIGFMRAM-----HKPVILV 115 (167)
T ss_dssp EEEESSSC-CHHHHHHHHHHHHT-----TCCEEEE
T ss_pred EECCCCCC-CCCceeehhhHhhC-----CCeEEEE
Confidence 99987554 45678899988766 6666654
No 23
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=28.48 E-value=38 Score=30.58 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=37.2
Q ss_pred eeeEEEeccc--ccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHH-hcCceEEEEecc
Q 027772 19 KYDVFLSFRG--EDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSKN 84 (219)
Q Consensus 19 ~yDVFISfrg--~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~-~S~~~IvV~S~n 84 (219)
.++|+|---+ .+.....+..|+..|++.|+.|-+|+++ ..+...+.+|-. ... .++|+.++
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~----~~~g~k~~~ad~~g~p-~~iivG~~ 428 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTD----QRAGAKFATADLIGIP-WQIHVGPR 428 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSS----CCHHHHHHHHHHHTCS-EEEEECHH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCC----CCHHHHHHHHHhcCCC-EEEEECCc
Confidence 3688775332 1223467899999999999999999854 334444444432 233 44555443
No 24
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=27.89 E-value=1.2e+02 Score=26.59 Aligned_cols=60 Identities=10% Similarity=0.149 Sum_probs=39.0
Q ss_pred eeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEec
Q 027772 19 KYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSK 83 (219)
Q Consensus 19 ~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ 83 (219)
.+||+|---+++ ....+..|+..|++.|++|-+|+++ ..+...+.+|-..---.++|+.+
T Consensus 298 p~~v~vi~~~~~-~~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~k~~~A~~~g~p~~iiiG~ 357 (401)
T 1evl_A 298 PVQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVPYMLVCGD 357 (401)
T ss_dssp SSCEEEEESSGG-GHHHHHHHHHHHHHTTCCEEEECCS----SCHHHHHHHHHHTTCSEEEEECH
T ss_pred CeEEEEEecCHH-HHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHhcCCCEEEEECc
Confidence 478887655544 3467899999999999999999743 34555555553332234444433
No 25
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=27.65 E-value=99 Score=27.88 Aligned_cols=62 Identities=11% Similarity=0.103 Sum_probs=41.0
Q ss_pred CeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecc
Q 027772 18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKN 84 (219)
Q Consensus 18 ~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~n 84 (219)
..+||+|-.-+++. ...+-.+...|+++|++|-+|.++ ..+...+..|-+.---.++|+.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~~----~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCSC----CCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeCC----CCHHHHHHHHHHcCCCEEEEECch
Confidence 35799976655553 357889999999999999998743 344445555544333355555544
No 26
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=27.27 E-value=1.8e+02 Score=21.06 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=17.2
Q ss_pred CccchHHHHHHHHhcCceEEEEeccc
Q 027772 60 GNEISSELSKAIEESNVSIVILSKNY 85 (219)
Q Consensus 60 G~~i~~~i~~aI~~S~~~IvV~S~ny 85 (219)
++.+.+.+.+.|++++..|.+.++.+
T Consensus 12 ~~~~~~~~~~~i~~A~~~I~i~~~~~ 37 (155)
T 1byr_A 12 EGSARVLVLSAIDSAKTSIRMMAYSF 37 (155)
T ss_dssp TTHHHHHHHHHHHHCSSEEEEEESSB
T ss_pred CCcHHHHHHHHHHHHhhEEEEEEEEe
Confidence 44555667777777777777776655
No 27
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=26.49 E-value=1.4e+02 Score=26.28 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=39.0
Q ss_pred CCeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEe
Q 027772 17 QSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILS 82 (219)
Q Consensus 17 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S 82 (219)
....||++..-+++. ...+-.|...|+++||++-+|.. .+..+...+..|-..---.+||+-
T Consensus 364 ~~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG 425 (464)
T 4g84_A 364 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIG 425 (464)
T ss_dssp SCCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC---SSCCHHHHHHHHHHHTCCEEEECC
T ss_pred cccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEEC
Confidence 345789998766654 34677899999999999977642 233455555555433222444443
No 28
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=26.38 E-value=82 Score=26.28 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=37.8
Q ss_pred HHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEecccCCChhHHHHHHHHHHhccc
Q 027772 38 NLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSKNYASSPWCLDELAKIVECGNK 104 (219)
Q Consensus 38 ~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~~S~wCl~EL~~i~~~~~~ 104 (219)
.|+..+-..|.--++|- ++..++.+...+.+.......-| |.|-+..+.+|-.+||...+..+.+
T Consensus 103 ~ll~~~~~~~~~d~iDv-El~~~~~~~~~l~~~a~~~~~ki-I~S~Hdf~~TP~~~el~~~~~~~~~ 167 (258)
T 4h3d_A 103 TLNKEISNTGLVDLIDV-ELFMGDEVIDEVVNFAHKKEVKV-IISNHDFNKTPKKEEIVSRLCRMQE 167 (258)
T ss_dssp HHHHHHHHTTCCSEEEE-EGGGCHHHHHHHHHHHHHTTCEE-EEEEEESSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchhhHH-hhhccHHHHHHHHHHHHhCCCEE-EEEEecCCCCCCHHHHHHHHHHHHH
Confidence 34444445555456665 45555555555555555555444 5566655667777888888877333
No 29
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=26.28 E-value=1.2e+02 Score=22.91 Aligned_cols=48 Identities=6% Similarity=0.097 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEE
Q 027772 32 RNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVIL 81 (219)
Q Consensus 32 r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~ 81 (219)
...++..+...|...|+++=+|.. ..++.+...|.++-.+---.++|+
T Consensus 20 ~~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 20 TKDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp GGHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred hHHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 357999999999999999999763 225666655665543322344444
No 30
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=25.31 E-value=1.7e+02 Score=26.60 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=39.1
Q ss_pred CCeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEe
Q 027772 17 QSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILS 82 (219)
Q Consensus 17 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S 82 (219)
...+|||+..-+++. ...+-.|...|+++||++-+|.. .+..+...+..|-+.---.+||+-
T Consensus 417 ~~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~~~viiG 478 (517)
T 4g85_A 417 TTETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIPLVAIIG 478 (517)
T ss_dssp SCCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS---SSCCHHHHHHHHHHHCCCEEEEEC
T ss_pred CCCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCCEEEEEC
Confidence 346899987765543 35678899999999999987642 233455555555443223444443
No 31
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=24.61 E-value=23 Score=24.87 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=18.1
Q ss_pred EEecccccCccchHHHHHHHHHcCC
Q 027772 23 FLSFRGEDTRNNFTDNLHTALIRNG 47 (219)
Q Consensus 23 FISfrg~D~r~~Fv~~L~~aL~~~G 47 (219)
|.|||+....-.|+..|++.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 4566766555679999999988654
No 32
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=23.65 E-value=86 Score=24.60 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=24.9
Q ss_pred EEecccccC--ccchHHHHHHHHHcCCeeeEec
Q 027772 23 FLSFRGEDT--RNNFTDNLHTALIRNGFIAFKD 53 (219)
Q Consensus 23 FISfrg~D~--r~~Fv~~L~~aL~~~Gi~vf~D 53 (219)
||.+-|-|. +.+-+..|.+.|+.+|+++..-
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 888888875 3567889999999999987653
No 33
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=23.63 E-value=1.5e+02 Score=26.70 Aligned_cols=60 Identities=15% Similarity=0.006 Sum_probs=39.2
Q ss_pred CeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEe
Q 027772 18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILS 82 (219)
Q Consensus 18 ~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S 82 (219)
...|||+..-+++.+ .-+-.+...|+++|++|-+|.. +..+...+..|-+.---.++++.
T Consensus 360 ~~~~v~v~~~~~~~~-~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiG 419 (456)
T 3lc0_A 360 HVVDDVVIPFDESMR-PHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVA 419 (456)
T ss_dssp CCEEEEEEESSGGGH-HHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEEC
T ss_pred CCCcEEEEEcCHHHH-HHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEEC
Confidence 357888776666643 4577899999999999988753 23455555555443333455554
No 34
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=22.81 E-value=94 Score=27.16 Aligned_cols=61 Identities=20% Similarity=0.308 Sum_probs=38.5
Q ss_pred CeeeEEEecccccCccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEec
Q 027772 18 SKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIEESNVSIVILSK 83 (219)
Q Consensus 18 ~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ 83 (219)
..+||+|-.-+++. ...+..|+..|++.|++|-+|+++ ..+...+..|-..---.++|+.+
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iiig~ 388 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYLQ----RKIKGQMKQADRLGAKFTIVIGD 388 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCSC----CCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCCEEEEECc
Confidence 34788876544432 357789999999999999998743 34444455543332234555543
No 35
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=22.39 E-value=77 Score=29.10 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=37.1
Q ss_pred CCeeeEEEecccccCccchHHHHHHHHHcCCeeeE--ecCC-CCcCCccchHHHHHHHHhcCceEEEEecccC
Q 027772 17 QSKYDVFLSFRGEDTRNNFTDNLHTALIRNGFIAF--KDDE-TLDRGNEISSELSKAIEESNVSIVILSKNYA 86 (219)
Q Consensus 17 ~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~Gi~vf--~D~~-~l~~G~~i~~~i~~aI~~S~~~IvV~S~ny~ 86 (219)
+.+.-|.++-...|.-..++..|++.|++.||+|. +|++ +-..|.. +.+|=..---.+||+.++-+
T Consensus 348 P~qV~Iii~~~~~e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK----~r~Ad~iGiPy~IiVG~kEl 416 (459)
T 3ikl_A 348 PIKVALDVGRGPTLELRQVCQGLFNELLENGISVWPGYLETMQSSLEQL----YSKYDEMSILFTVLVTETTL 416 (459)
T ss_dssp SCCEEEEESSCCSTTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHHH----HHHHGGGTCSEEEEECTTST
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHHH----HHHHHHcCCCEEEEECchhh
Confidence 34444544321123345789999999999999999 6764 3334433 33332222224555655543
No 36
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=21.48 E-value=27 Score=24.82 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=16.2
Q ss_pred EEecccccCccchHHHHHHHHHcCC
Q 027772 23 FLSFRGEDTRNNFTDNLHTALIRNG 47 (219)
Q Consensus 23 FISfrg~D~r~~Fv~~L~~aL~~~G 47 (219)
|.|||+.+..-.|+..|++.|++.|
T Consensus 23 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 23 YYSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp BCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred cEeeecCCCCCeeHHHHHHHHHHhC
Confidence 3445555445568888888887654
No 37
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=21.21 E-value=1.4e+02 Score=26.19 Aligned_cols=60 Identities=17% Similarity=0.235 Sum_probs=38.4
Q ss_pred CeeeEEEecccccCccchHHHHHHHHHcC--CeeeEecCCCCcCCccchHHHHHHHHhcCceEEEEe
Q 027772 18 SKYDVFLSFRGEDTRNNFTDNLHTALIRN--GFIAFKDDETLDRGNEISSELSKAIEESNVSIVILS 82 (219)
Q Consensus 18 ~~yDVFISfrg~D~r~~Fv~~L~~aL~~~--Gi~vf~D~~~l~~G~~i~~~i~~aI~~S~~~IvV~S 82 (219)
..+||+|-.-+++ ....+..|++.|+++ |++|-+|+++ ..+...+..|-..---.++|+.
T Consensus 326 ~p~~v~i~~~~~~-~~~~a~~l~~~Lr~~~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p~~iiiG 387 (423)
T 1htt_A 326 PVVDIYLVASGAD-TQSAAMALAERLRDELPGVKLMTNHGG----GNFKKQFARADKWGARVAVVLG 387 (423)
T ss_dssp CSCSEEEEECSTT-HHHHHHHHHHHHHHHSTTCCEEECCSC----CCHHHHHHHHHHHTCSEEEEEC
T ss_pred CCCcEEEEEcCHH-HHHHHHHHHHHHHcCCCCcEEEEeCCC----CCHHHHHHHHHHcCCCEEEEEC
Confidence 3478888765544 345788999999999 9999998753 3444445555332222444444
No 38
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=21.11 E-value=25 Score=24.94 Aligned_cols=29 Identities=14% Similarity=0.197 Sum_probs=18.2
Q ss_pred eeeEEEecc---------cccCccchHHHHHHHHHcCC
Q 027772 19 KYDVFLSFR---------GEDTRNNFTDNLHTALIRNG 47 (219)
Q Consensus 19 ~yDVFISfr---------g~D~r~~Fv~~L~~aL~~~G 47 (219)
.-|.+++|+ +.+..-.|+..|++.|++.|
T Consensus 12 ~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~~ 49 (95)
T 1qtn_B 12 EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRERC 49 (95)
T ss_dssp TCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHG
T ss_pred CCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHhC
Confidence 456666554 44444558888888887643
No 39
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=20.73 E-value=51 Score=23.82 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.8
Q ss_pred cchHHHHHHHHHcCCeeeE
Q 027772 33 NNFTDNLHTALIRNGFIAF 51 (219)
Q Consensus 33 ~~Fv~~L~~aL~~~Gi~vf 51 (219)
..|+..|...|.++||+|=
T Consensus 9 q~fi~~lk~lLk~RgIkVk 27 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKVK 27 (94)
T ss_pred hHHHHHHHHHHHHcCeeec
Confidence 3699999999999999983
No 40
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=20.68 E-value=2.5e+02 Score=21.49 Aligned_cols=85 Identities=12% Similarity=0.090 Sum_probs=55.1
Q ss_pred eEEEe---cccccCccchHHHHHHHHHcCCe----eeEecCCCCc---------C---C----ccchHHHHHHHHhcCce
Q 027772 21 DVFLS---FRGEDTRNNFTDNLHTALIRNGF----IAFKDDETLD---------R---G----NEISSELSKAIEESNVS 77 (219)
Q Consensus 21 DVFIS---frg~D~r~~Fv~~L~~aL~~~Gi----~vf~D~~~l~---------~---G----~~i~~~i~~aI~~S~~~ 77 (219)
.|||. |+..+ ......+.++|+..|. .+|.-.++-. . + ..|...=.++|++|++.
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 35655 44333 3578899999999985 6765432111 1 1 12344445689999999
Q ss_pred EEEEecccCCChhHHHHHHHHHHhccccCCCeEEEE
Q 027772 78 IVILSKNYASSPWCLDELAKIVECGNKRKDRKVFAV 113 (219)
Q Consensus 78 IvV~S~ny~~S~wCl~EL~~i~~~~~~~~~~~ViPV 113 (219)
|.++...-. +.=+..|+-.+... ++.|+-+
T Consensus 83 vA~ldg~~~-D~GT~~EiGyA~A~-----gkPVv~~ 112 (157)
T 1f8y_A 83 LGVYIPDEE-DVGLGMELGYALSQ-----GKYVLLV 112 (157)
T ss_dssp EEECCGGGC-CHHHHHHHHHHHHT-----TCEEEEE
T ss_pred EEEcCCCCC-CccHHHHHHHHHHC-----CCeEEEE
Confidence 999985444 45678899998766 6666654
No 41
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=20.33 E-value=75 Score=29.18 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=37.2
Q ss_pred eeeEEEecc-c-cc--CccchHHHHHHHHHcCCeeeEecCCCCcCCccchHHHHHHHH-hcCceEEEEec
Q 027772 19 KYDVFLSFR-G-ED--TRNNFTDNLHTALIRNGFIAFKDDETLDRGNEISSELSKAIE-ESNVSIVILSK 83 (219)
Q Consensus 19 ~yDVFISfr-g-~D--~r~~Fv~~L~~aL~~~Gi~vf~D~~~l~~G~~i~~~i~~aI~-~S~~~IvV~S~ 83 (219)
.|+|+|--- + ++ .-...+..|++.|++.|++|-+|+++-..| -.+.+|-. ... .++++.+
T Consensus 314 P~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g----~k~~~a~~~G~p-~~iiiG~ 378 (501)
T 1nj1_A 314 AHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAG----RKYYEWEMRGVP-LRVEIGP 378 (501)
T ss_dssp SCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHH----HHHHHHHHEECS-EEEEECH
T ss_pred CceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHH----HHHHHHHhcCCC-EEEEECc
Confidence 478876543 3 21 234688999999999999999998643333 33444433 233 3445544
Done!