Query 027773
Match_columns 219
No_of_seqs 147 out of 1667
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 14:57:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 99.9 1.9E-21 4.2E-26 167.0 16.5 150 33-183 186-335 (358)
2 PRK10532 threonine and homoser 99.8 3.8E-18 8.3E-23 143.3 16.5 140 34-180 146-285 (293)
3 PRK11453 O-acetylserine/cystei 99.8 1.8E-17 4E-22 139.6 16.0 145 35-179 142-290 (299)
4 COG2510 Predicted membrane pro 99.8 2.8E-17 6.2E-22 118.1 13.5 136 37-176 4-139 (140)
5 PRK11272 putative DMT superfam 99.7 1.2E-16 2.6E-21 134.2 14.0 141 34-179 148-288 (292)
6 PRK11689 aromatic amino acid e 99.7 7.5E-17 1.6E-21 135.6 12.7 137 34-179 154-290 (295)
7 TIGR00950 2A78 Carboxylate/Ami 99.7 1.2E-15 2.5E-20 125.6 15.2 135 33-172 125-260 (260)
8 TIGR00817 tpt Tpt phosphate/ph 99.7 8.6E-16 1.9E-20 129.5 11.7 145 34-179 143-296 (302)
9 PF00892 EamA: EamA-like trans 99.6 1E-15 2.2E-20 111.7 9.5 125 46-175 1-125 (126)
10 PF06027 DUF914: Eukaryotic pr 99.6 5.5E-14 1.2E-18 119.2 17.2 152 27-181 159-310 (334)
11 COG5006 rhtA Threonine/homoser 99.6 3.4E-14 7.5E-19 113.5 12.8 144 30-179 142-285 (292)
12 TIGR03340 phn_DUF6 phosphonate 99.6 3.1E-14 6.6E-19 119.0 13.1 134 35-173 143-280 (281)
13 PRK15430 putative chlorampheni 99.5 2.5E-13 5.5E-18 114.3 11.6 132 39-176 152-285 (296)
14 PTZ00343 triose or hexose phos 99.5 6.8E-13 1.5E-17 114.2 12.6 143 34-177 192-349 (350)
15 PRK15430 putative chlorampheni 99.4 2.1E-12 4.6E-17 108.6 13.5 140 32-176 4-145 (296)
16 TIGR00688 rarD rarD protein. T 99.4 3.6E-12 7.9E-17 104.9 12.9 138 36-176 2-142 (256)
17 COG0697 RhaT Permeases of the 99.4 9.6E-12 2.1E-16 103.1 15.5 136 34-177 152-288 (292)
18 TIGR03340 phn_DUF6 phosphonate 99.4 2.3E-11 5.1E-16 101.6 14.6 134 38-177 3-136 (281)
19 KOG2765 Predicted membrane pro 99.3 5.6E-11 1.2E-15 100.1 13.5 154 27-180 238-394 (416)
20 PF03151 TPT: Triose-phosphate 99.3 8.2E-11 1.8E-15 89.2 13.0 139 37-176 1-153 (153)
21 PLN00411 nodulin MtN21 family 99.3 7.7E-11 1.7E-15 101.6 14.2 141 35-178 12-158 (358)
22 PF08449 UAA: UAA transporter 99.2 8.3E-10 1.8E-14 93.3 15.5 145 34-180 152-301 (303)
23 PRK11272 putative DMT superfam 99.2 6E-10 1.3E-14 93.6 14.2 131 38-176 10-141 (292)
24 PRK02971 4-amino-4-deoxy-L-ara 99.2 6.4E-10 1.4E-14 82.2 12.3 121 36-178 2-124 (129)
25 KOG4510 Permease of the drug/m 99.2 2.3E-11 5E-16 98.2 4.8 165 8-179 163-328 (346)
26 PF13536 EmrE: Multidrug resis 99.2 2.6E-10 5.7E-15 82.5 8.9 108 70-179 2-109 (113)
27 TIGR00950 2A78 Carboxylate/Ami 99.1 7.5E-10 1.6E-14 91.0 12.3 119 48-176 1-119 (260)
28 KOG1580 UDP-galactose transpor 99.1 2.7E-09 5.8E-14 85.0 14.3 149 25-175 161-312 (337)
29 PRK11689 aromatic amino acid e 99.1 1.1E-09 2.5E-14 92.0 12.9 132 35-177 3-138 (295)
30 PRK11453 O-acetylserine/cystei 99.1 1.5E-09 3.1E-14 91.6 13.6 126 38-176 6-132 (299)
31 TIGR00776 RhaT RhaT L-rhamnose 99.1 9.1E-10 2E-14 92.5 12.0 132 33-176 149-288 (290)
32 TIGR00817 tpt Tpt phosphate/ph 99.0 1.9E-08 4E-13 84.9 14.2 121 50-175 16-136 (302)
33 COG2962 RarD Predicted permeas 98.9 1.3E-08 2.9E-13 83.5 11.6 144 32-179 3-147 (293)
34 PTZ00343 triose or hexose phos 98.9 3.8E-08 8.3E-13 84.8 15.2 127 46-176 59-186 (350)
35 PRK15051 4-amino-4-deoxy-L-ara 98.9 2.7E-08 5.9E-13 71.7 9.3 67 109-175 42-108 (111)
36 COG0697 RhaT Permeases of the 98.8 1.5E-07 3.3E-12 77.9 14.5 143 33-180 4-147 (292)
37 TIGR00776 RhaT RhaT L-rhamnose 98.7 2E-07 4.3E-12 78.4 12.3 132 37-178 2-138 (290)
38 KOG1441 Glucose-6-phosphate/ph 98.7 2.9E-08 6.2E-13 83.7 7.1 153 29-183 156-314 (316)
39 COG2962 RarD Predicted permeas 98.7 3.4E-07 7.4E-12 75.3 12.0 134 40-178 152-285 (293)
40 TIGR00688 rarD rarD protein. T 98.7 2.1E-07 4.6E-12 76.5 10.5 107 39-151 149-255 (256)
41 KOG1581 UDP-galactose transpor 98.7 1.6E-07 3.4E-12 77.6 9.3 153 26-180 162-317 (327)
42 PRK10532 threonine and homoser 98.7 8E-07 1.7E-11 74.7 13.8 130 32-176 8-137 (293)
43 KOG2766 Predicted membrane pro 98.6 1.6E-07 3.4E-12 75.8 8.1 146 26-178 156-301 (336)
44 PF06027 DUF914: Eukaryotic pr 98.5 5.4E-06 1.2E-10 70.7 13.5 138 36-179 17-154 (334)
45 PRK10452 multidrug efflux syst 98.4 9.8E-06 2.1E-10 59.0 10.8 69 110-178 36-105 (120)
46 TIGR00803 nst UDP-galactose tr 98.3 2.9E-06 6.3E-11 68.4 8.5 137 33-174 82-222 (222)
47 KOG1583 UDP-N-acetylglucosamin 98.2 6.1E-05 1.3E-09 61.8 14.2 174 2-180 134-318 (330)
48 KOG1444 Nucleotide-sugar trans 98.2 1.5E-05 3.4E-10 66.4 11.0 154 28-182 149-306 (314)
49 COG5070 VRG4 Nucleotide-sugar 98.2 1.8E-06 4E-11 68.5 5.3 149 33-182 152-302 (309)
50 PF08449 UAA: UAA transporter 98.2 4.1E-05 9E-10 64.7 13.7 126 50-182 14-142 (303)
51 KOG4510 Permease of the drug/m 98.2 9.8E-07 2.1E-11 71.8 3.5 137 33-178 35-171 (346)
52 KOG2234 Predicted UDP-galactos 98.2 0.00012 2.6E-09 62.1 15.5 150 28-180 175-326 (345)
53 PF04657 DUF606: Protein of un 98.2 8.2E-05 1.8E-09 55.7 12.6 132 37-173 2-138 (138)
54 PF05653 Mg_trans_NIPA: Magnes 98.2 1.4E-05 3.1E-10 67.4 9.3 122 31-177 2-123 (300)
55 KOG1582 UDP-galactose transpor 98.2 1.2E-05 2.5E-10 65.8 8.3 148 31-179 185-335 (367)
56 PRK09541 emrE multidrug efflux 98.1 6.1E-05 1.3E-09 54.1 10.6 68 111-178 37-105 (110)
57 PRK10650 multidrug efflux syst 98.0 9.1E-05 2E-09 53.0 10.3 65 111-175 42-107 (109)
58 PRK11431 multidrug efflux syst 98.0 0.00012 2.5E-09 52.1 9.6 66 111-176 36-102 (105)
59 KOG1443 Predicted integral mem 98.0 0.00048 1E-08 57.4 14.2 141 33-174 161-313 (349)
60 PRK13499 rhamnose-proton sympo 97.9 7.9E-05 1.7E-09 63.8 10.0 138 33-177 4-154 (345)
61 COG2076 EmrE Membrane transpor 97.9 3.7E-05 8.1E-10 54.3 6.5 65 113-177 39-104 (106)
62 PF06800 Sugar_transport: Suga 97.9 0.00017 3.7E-09 59.6 11.1 81 101-182 43-128 (269)
63 COG3238 Uncharacterized protei 97.9 0.00038 8.2E-09 52.4 12.0 140 34-177 3-147 (150)
64 PF06800 Sugar_transport: Suga 97.9 0.00036 7.7E-09 57.7 12.1 132 30-173 132-268 (269)
65 KOG1442 GDP-fucose transporter 97.9 1E-05 2.2E-10 66.2 2.9 152 32-185 181-336 (347)
66 PF04142 Nuc_sug_transp: Nucle 97.9 0.00023 5.1E-09 58.3 10.9 135 31-167 109-244 (244)
67 PF00893 Multi_Drug_Res: Small 97.7 0.00029 6.2E-09 49.0 7.8 57 111-167 36-93 (93)
68 PF10639 UPF0546: Uncharacteri 97.6 0.00065 1.4E-08 48.8 8.7 110 42-174 2-112 (113)
69 PF04142 Nuc_sug_transp: Nucle 97.5 0.00041 8.9E-09 56.9 7.6 79 102-181 16-94 (244)
70 COG4975 GlcU Putative glucose 97.1 0.00022 4.7E-09 57.7 1.8 134 36-180 2-140 (288)
71 PF07857 DUF1632: CEO family ( 97.1 0.001 2.2E-08 54.6 5.1 129 37-182 1-140 (254)
72 KOG2922 Uncharacterized conser 96.9 0.00049 1.1E-08 57.6 2.0 128 30-182 15-142 (335)
73 KOG3912 Predicted integral mem 96.8 0.0079 1.7E-07 49.8 8.2 149 28-176 168-334 (372)
74 KOG1441 Glucose-6-phosphate/ph 96.8 0.00071 1.5E-08 57.3 2.3 119 51-173 32-152 (316)
75 PRK13499 rhamnose-proton sympo 96.7 0.13 2.7E-06 44.4 15.3 145 30-177 168-342 (345)
76 COG5006 rhtA Threonine/homoser 96.5 0.16 3.5E-06 41.6 13.7 103 37-148 13-115 (292)
77 KOG2234 Predicted UDP-galactos 95.7 0.93 2E-05 38.9 15.0 60 118-177 106-165 (345)
78 KOG4314 Predicted carbohydrate 95.6 0.1 2.2E-06 41.2 8.3 146 32-178 131-278 (290)
79 KOG4314 Predicted carbohydrate 95.5 0.0097 2.1E-07 46.8 2.5 61 118-178 67-127 (290)
80 KOG2765 Predicted membrane pro 95.0 0.032 7E-07 47.9 4.2 67 115-181 170-236 (416)
81 KOG1443 Predicted integral mem 94.6 0.44 9.5E-06 40.2 9.7 125 54-179 34-159 (349)
82 KOG1444 Nucleotide-sugar trans 94.4 0.77 1.7E-05 38.8 10.8 133 37-176 13-149 (314)
83 KOG1580 UDP-galactose transpor 94.2 0.092 2E-06 42.6 4.8 135 40-181 17-162 (337)
84 PF06379 RhaT: L-rhamnose-prot 93.5 0.39 8.4E-06 41.1 7.5 142 33-178 4-155 (344)
85 PF05977 MFS_3: Transmembrane 92.9 5.6 0.00012 36.4 14.7 41 135-175 351-391 (524)
86 KOG3912 Predicted integral mem 92.9 1.4 3E-05 36.9 9.6 65 113-177 95-159 (372)
87 PRK02237 hypothetical protein; 92.7 0.61 1.3E-05 33.0 6.3 45 134-178 63-107 (109)
88 PF07168 Ureide_permease: Urei 92.5 0.082 1.8E-06 44.3 2.1 133 41-176 1-146 (336)
89 KOG1581 UDP-galactose transpor 92.4 2.7 5.8E-05 35.5 10.8 138 37-181 15-160 (327)
90 KOG1442 GDP-fucose transporter 91.9 0.37 8.1E-06 40.0 5.2 112 64-178 60-176 (347)
91 COG4975 GlcU Putative glucose 91.9 0.023 4.9E-07 46.3 -1.7 135 30-175 146-284 (288)
92 PF05653 Mg_trans_NIPA: Magnes 91.5 1.4 3.1E-05 37.2 8.5 67 113-179 221-295 (300)
93 PF02694 UPF0060: Uncharacteri 90.3 1.1 2.4E-05 31.6 5.6 44 135-178 62-105 (107)
94 KOG4831 Unnamed protein [Funct 90.0 0.74 1.6E-05 32.5 4.5 59 117-175 65-124 (125)
95 PF04342 DUF486: Protein of un 89.9 0.47 1E-05 33.4 3.5 32 144-175 76-107 (108)
96 COG3169 Uncharacterized protei 89.6 1 2.2E-05 31.4 4.8 34 143-176 82-115 (116)
97 PF05297 Herpes_LMP1: Herpesvi 85.9 0.22 4.8E-06 41.4 -0.2 67 115-181 119-189 (381)
98 COG1742 Uncharacterized conser 85.2 3.5 7.5E-05 29.0 5.5 45 134-178 62-106 (109)
99 KOG2766 Predicted membrane pro 85.2 0.14 3.1E-06 42.0 -1.5 131 36-179 22-153 (336)
100 PF03547 Mem_trans: Membrane t 84.8 25 0.00054 30.4 14.0 22 103-124 62-83 (385)
101 KOG2922 Uncharacterized conser 75.2 9.5 0.00021 32.5 5.9 66 118-183 241-313 (335)
102 COG5070 VRG4 Nucleotide-sugar 73.0 14 0.00031 30.0 6.1 59 122-180 86-144 (309)
103 PF15102 TMEM154: TMEM154 prot 71.4 6.4 0.00014 29.5 3.7 23 161-183 66-88 (146)
104 PRK13108 prolipoprotein diacyl 68.3 34 0.00074 30.8 8.2 23 156-178 254-276 (460)
105 KOG1583 UDP-N-acetylglucosamin 65.1 13 0.00027 31.3 4.5 135 37-182 7-143 (330)
106 PLN00028 nitrate transmembrane 64.2 1E+02 0.0023 27.4 10.7 16 161-176 417-432 (476)
107 PF01102 Glycophorin_A: Glycop 61.1 2.9 6.2E-05 30.5 0.1 17 161-177 74-90 (122)
108 PF06123 CreD: Inner membrane 54.6 1.6E+02 0.0035 26.4 11.9 123 36-174 300-422 (430)
109 COG3086 RseC Positive regulato 52.7 9.9 0.00021 28.5 1.8 24 128-151 72-95 (150)
110 PRK11902 ampG muropeptide tran 49.9 1.7E+02 0.0036 25.2 13.6 19 158-176 370-388 (402)
111 TIGR01299 synapt_SV2 synaptic 49.8 2.5E+02 0.0054 27.1 13.7 38 46-84 606-643 (742)
112 PRK15432 autoinducer 2 ABC tra 49.7 74 0.0016 27.5 6.9 24 157-180 287-310 (344)
113 PRK11715 inner membrane protei 47.4 2.1E+02 0.0046 25.7 11.4 46 36-85 306-351 (436)
114 PRK11010 ampG muropeptide tran 47.1 2.1E+02 0.0046 25.6 13.5 52 126-177 347-402 (491)
115 COG2271 UhpC Sugar phosphate p 47.1 1.5E+02 0.0032 26.7 8.3 46 139-185 168-214 (448)
116 TIGR01167 LPXTG_anchor LPXTG-m 47.0 30 0.00065 18.5 2.8 20 156-175 10-29 (34)
117 TIGR00881 2A0104 phosphoglycer 43.6 1.9E+02 0.004 23.9 13.2 17 46-62 41-57 (379)
118 PRK05122 major facilitator sup 43.5 2.1E+02 0.0045 24.4 13.7 33 144-176 355-387 (399)
119 COG2814 AraJ Arabinose efflux 42.2 2.5E+02 0.0053 24.9 10.8 37 145-181 353-389 (394)
120 PF04246 RseC_MucC: Positive r 41.7 13 0.00028 27.3 1.0 43 133-176 70-115 (135)
121 PF11295 DUF3096: Protein of u 41.5 29 0.00063 19.8 2.1 34 141-174 1-34 (39)
122 PRK10489 enterobactin exporter 39.8 2.4E+02 0.0053 24.2 13.5 17 160-176 382-398 (417)
123 PF01350 Flavi_NS4A: Flaviviru 39.7 1.6E+02 0.0035 22.1 8.0 58 120-181 64-121 (144)
124 PF08507 COPI_assoc: COPI asso 37.0 82 0.0018 23.1 4.6 15 160-174 89-103 (136)
125 TIGR00905 2A0302 transporter, 36.7 3.1E+02 0.0067 24.5 9.3 44 135-179 393-437 (473)
126 PF07123 PsbW: Photosystem II 34.4 23 0.00051 26.2 1.3 30 31-60 101-130 (138)
127 PRK10862 SoxR reducing system 34.3 31 0.00066 26.2 2.0 40 135-175 79-121 (154)
128 COG4858 Uncharacterized membra 33.5 1.7E+02 0.0036 23.2 5.8 12 46-57 110-121 (226)
129 PF05961 Chordopox_A13L: Chord 33.2 70 0.0015 20.6 3.1 18 160-177 6-23 (68)
130 PRK10054 putative transporter; 33.2 3.2E+02 0.0068 23.5 11.8 35 138-172 142-176 (395)
131 TIGR00840 b_cpa1 sodium/hydrog 33.0 4E+02 0.0088 24.7 10.5 40 38-78 12-51 (559)
132 TIGR00803 nst UDP-galactose tr 32.5 19 0.00042 28.5 0.7 41 136-176 10-50 (222)
133 TIGR00893 2A0114 d-galactonate 31.6 3E+02 0.0064 22.7 12.9 11 52-62 46-56 (399)
134 PF03348 Serinc: Serine incorp 30.7 4E+02 0.0086 23.9 12.8 59 107-178 247-305 (429)
135 PF15471 TMEM171: Transmembran 30.7 1E+02 0.0022 25.8 4.5 20 159-178 162-181 (319)
136 PF07444 Ycf66_N: Ycf66 protei 30.5 42 0.0009 22.8 1.9 27 155-181 4-30 (84)
137 COG0811 TolQ Biopolymer transp 29.3 1.1E+02 0.0023 24.5 4.5 59 108-179 131-189 (216)
138 PRK10435 cadB lysine/cadaverin 28.7 4.1E+02 0.0088 23.4 10.2 48 106-153 354-402 (435)
139 PF01618 MotA_ExbB: MotA/TolQ/ 28.1 1.4E+02 0.003 21.8 4.6 59 107-178 66-124 (139)
140 PF15345 TMEM51: Transmembrane 27.6 44 0.00095 27.1 1.9 22 162-183 67-88 (233)
141 PF14851 FAM176: FAM176 family 27.5 2.1E+02 0.0047 21.7 5.5 15 123-137 12-26 (153)
142 KOG2533 Permease of the major 27.1 2.3E+02 0.005 25.8 6.7 7 51-57 329-335 (495)
143 PF08693 SKG6: Transmembrane a 26.9 54 0.0012 18.9 1.7 16 163-178 22-37 (40)
144 PF04306 DUF456: Protein of un 25.7 2.8E+02 0.0061 20.5 7.7 49 101-152 31-79 (140)
145 CHL00196 psbY photosystem II p 25.3 1.4E+02 0.003 16.8 3.7 19 37-55 7-25 (36)
146 PRK06638 NADH:ubiquinone oxido 25.2 3.4E+02 0.0074 21.3 13.2 34 145-178 133-168 (198)
147 PRK12650 putative monovalent c 25.1 7.1E+02 0.015 25.0 10.2 14 34-47 740-753 (962)
148 PF04277 OAD_gamma: Oxaloaceta 25.1 1.5E+02 0.0032 19.2 3.9 12 161-172 9-20 (79)
149 TIGR00910 2A0307_GadC glutamat 25.0 5.2E+02 0.011 23.4 13.4 17 64-80 330-346 (507)
150 PRK10655 potE putrescine trans 24.9 4.7E+02 0.01 22.9 9.1 38 139-176 389-426 (438)
151 PLN00082 photosystem II reacti 24.7 52 0.0011 21.0 1.4 31 30-60 28-58 (67)
152 PRK10644 arginine:agmatin anti 23.4 5.1E+02 0.011 22.8 10.3 18 135-152 385-402 (445)
153 PRK11469 hypothetical protein; 23.2 49 0.0011 26.0 1.4 38 138-175 48-86 (188)
154 PF06781 UPF0233: Uncharacteri 22.7 1.6E+02 0.0034 20.1 3.6 56 101-176 30-85 (87)
155 PF15048 OSTbeta: Organic solu 22.7 66 0.0014 23.5 1.9 23 153-175 29-55 (125)
156 PRK11195 lysophospholipid tran 22.4 5E+02 0.011 22.2 12.5 38 144-182 347-385 (393)
157 PRK12437 prolipoprotein diacyl 22.3 84 0.0018 26.1 2.7 23 156-178 235-257 (269)
158 PRK09579 multidrug efflux prot 22.3 2.2E+02 0.0047 28.6 6.0 32 143-175 883-914 (1017)
159 PF13127 DUF3955: Protein of u 22.3 2.2E+02 0.0047 18.0 4.6 25 34-58 4-28 (63)
160 PHA03049 IMV membrane protein; 22.1 1.4E+02 0.003 19.2 3.0 17 160-176 6-22 (68)
161 PF06946 Phage_holin_5: Phage 22.0 2.8E+02 0.006 19.2 6.4 55 122-176 22-80 (93)
162 PRK05771 V-type ATP synthase s 21.7 6.8E+02 0.015 23.6 12.9 27 153-179 502-528 (646)
163 PF06570 DUF1129: Protein of u 21.7 4E+02 0.0087 20.9 8.5 32 118-152 160-191 (206)
164 PRK09577 multidrug efflux prot 21.4 2.3E+02 0.0051 28.4 6.0 32 143-175 904-935 (1032)
165 PF06298 PsbY: Photosystem II 20.7 1.8E+02 0.0038 16.4 3.7 21 37-57 7-27 (36)
166 PF06679 DUF1180: Protein of u 20.7 2.1E+02 0.0046 21.9 4.4 11 207-217 148-158 (163)
167 COG1971 Predicted membrane pro 20.6 93 0.002 24.5 2.5 39 138-176 48-87 (190)
168 cd08764 Cyt_b561_CG1275_like N 20.5 4.6E+02 0.0099 21.1 13.4 19 159-177 176-194 (214)
169 PRK10801 colicin uptake protei 20.5 2.1E+02 0.0045 23.1 4.6 60 108-180 136-195 (227)
170 TIGR00939 2a57 Equilibrative N 20.4 3.9E+02 0.0085 23.8 6.8 24 40-63 50-73 (437)
171 PF01306 LacY_symp: LacY proto 20.4 4.4E+02 0.0096 23.5 6.9 37 132-168 142-178 (412)
172 PF12606 RELT: Tumour necrosis 20.1 1.8E+02 0.0039 17.6 3.1 13 167-179 14-26 (50)
173 COG4956 Integral membrane prot 20.1 5.7E+02 0.012 22.0 9.3 19 111-129 117-135 (356)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.88 E-value=1.9e-21 Score=167.04 Aligned_cols=150 Identities=31% Similarity=0.647 Sum_probs=123.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHh
Q 027773 33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 112 (219)
Q Consensus 33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 112 (219)
+...|++++++++++|++|.+++|+..+++|+....+++++..+++...+.++..++.+...|....+.....+++.+++
T Consensus 186 ~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~ 265 (358)
T PLN00411 186 DWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAII 265 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHH
Confidence 44679999999999999999999999999975667788888888888777776655422333332222344557777765
Q ss_pred hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCCC
Q 027773 113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHK 183 (219)
Q Consensus 113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~~ 183 (219)
+.++|.+|++++++.||++++++.+++|+++++++++++||++++.+++|+++|+.|+++..+.+++|.+
T Consensus 266 -t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~~ 335 (358)
T PLN00411 266 -TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEEK 335 (358)
T ss_pred -HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 6789999999999999999999999999999999999999999999999999999999999987665544
No 2
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.79 E-value=3.8e-18 Score=143.33 Aligned_cols=140 Identities=13% Similarity=0.152 Sum_probs=115.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhh
Q 027773 34 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 113 (219)
Q Consensus 34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 113 (219)
...|++++++++++|+.|.+..|+..++.+ +... .+...++++.+.+.....+. ...+ +...|..+++.|+++
T Consensus 146 ~~~G~ll~l~aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~--~~~~---~~~~~~~~l~lgv~~ 218 (293)
T PRK10532 146 DLTGAALALGAGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG--EALW---HWSILPLGLAVAILS 218 (293)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC--cccC---CHHHHHHHHHHHHHH
Confidence 467999999999999999999999987774 5554 45666666666665543221 1111 113465678999999
Q ss_pred hHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773 114 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 114 ~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~ 180 (219)
+.++|.+|+++++++++++++++.+++|+++++++++++||++++.+++|+++|++|++...+.+++
T Consensus 219 t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 219 TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998776544
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.77 E-value=1.8e-17 Score=139.56 Aligned_cols=145 Identities=22% Similarity=0.344 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCc--hHHHHHHHHHHHHHHHHHHHHHHhcCCc--cceeeccchhHHHHHhHH
Q 027773 35 IKGALMITAGCFSWSFFIILQAITLKAYPA--ELSLTAWICFFGTVEGTLAALIMERGKA--SIWAIHWDTKLVASVYSG 110 (219)
Q Consensus 35 ~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~g 110 (219)
..|++++++++++|+.|.++.|+..++.++ ......+.+.++.+......+..++... ..+...+...|..+++.+
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 579999999999999999999998765532 2344556666666555544444433111 111112235788999999
Q ss_pred HhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 111 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
+++++++|.+|++++++.++.+++.+.+++|+++++++++++||++++.+++|++++++|+++..+.++
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 999999999999999999999999999999999999999999999999999999999999999876554
No 4
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.76 E-value=2.8e-17 Score=118.07 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHH
Q 027773 37 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 116 (219)
Q Consensus 37 G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i 116 (219)
-.++++++++++++..++.|...++. ||...++.+.++..++++.+.+..+. +....-.+++.|..+++.|+ ++++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~--~~~~~~~~~k~~lflilSGl-a~gl 79 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGN--WQAGGEIGPKSWLFLILSGL-AGGL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCc--eecccccCcceehhhhHHHH-HHHH
Confidence 46899999999999999999999988 58888999999888888777664432 21111124477888888985 8899
Q ss_pred HHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 117 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 117 ~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
++.+|++|++...++++.++..+.|+++++++++++||+++..+++|+++|++|++++.+
T Consensus 80 swl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 80 SWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999999999988754
No 5
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.72 E-value=1.2e-16 Score=134.19 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=118.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhh
Q 027773 34 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 113 (219)
Q Consensus 34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 113 (219)
...|++++++++++|+.|.+..||..++. +...+.+++..+++.+.++....+. +.. ..++...|..+++.++++
T Consensus 148 ~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~i~~l~i~~ 222 (292)
T PRK11272 148 NPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGE-RLT--ALPTLSGFLALGYLAVFG 222 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCC-ccc--ccCCHHHHHHHHHHHHHH
Confidence 45799999999999999999999875433 4556778888888887777654332 211 112335788899999999
Q ss_pred hHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 114 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 114 ~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
+++++.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++++.|+++..++++
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999876544
No 6
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.72 E-value=7.5e-17 Score=135.62 Aligned_cols=137 Identities=10% Similarity=0.149 Sum_probs=106.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhh
Q 027773 34 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 113 (219)
Q Consensus 34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 113 (219)
...|++++++++++|+.|.++.||..++. ++.... ...+.+.+.+.... ++ .. ... .+...|..+++.+ ++
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~-~~-~~-~~~-~~~~~~~~l~~~~-~~ 224 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFL-SP-QP-AMV-FSLPAIIKLLLAA-AA 224 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHH-hc-Cc-ccc-CCHHHHHHHHHHH-HH
Confidence 35699999999999999999999997766 455432 23333444333332 22 11 111 1224677777777 47
Q ss_pred hHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 114 SGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 114 ~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
++++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++|+.|+++..+.++
T Consensus 225 t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 225 MGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 899999999999999999999999999999999999999999999999999999999988876443
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.68 E-value=1.2e-15 Score=125.61 Aligned_cols=135 Identities=19% Similarity=0.269 Sum_probs=114.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHH
Q 027773 33 NSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGI 111 (219)
Q Consensus 33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 111 (219)
....|++++++++++|+.+.+..|+..++.+ ++.....+++.++.+++.+..+..++ .. .+ +...|..+++.++
T Consensus 125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-~~---~~~~~~~~~~~~~ 199 (260)
T TIGR00950 125 INPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGP-NP-QA---LSLQWGALLYLGL 199 (260)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCC-CC-Cc---chHHHHHHHHHHH
Confidence 4578999999999999999999999987763 23455557788888888877764333 11 11 2256777899999
Q ss_pred hhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhh
Q 027773 112 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLY 172 (219)
Q Consensus 112 ~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~ 172 (219)
+++.++|.+|++++++.++++++.+.+++|++++++++++++|++++.+++|+++++.|++
T Consensus 200 ~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 200 IGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999864
No 8
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.66 E-value=8.6e-16 Score=129.51 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=110.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh--hCCchHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cee-----eccchhHH
Q 027773 34 SIKGALMITAGCFSWSFFIILQAITLK--AYPAELSLTAWICFFGTVEGTLAALIMERGKAS--IWA-----IHWDTKLV 104 (219)
Q Consensus 34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~-----~~~~~~~~ 104 (219)
...|++++++++++|++|.+..||..+ +. ++...+.+++..+++.+.++....++.+.. .+. ......+.
T Consensus 143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T TIGR00817 143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYT 221 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHH
Confidence 467999999999999999999999987 66 589999999999999999888765531110 010 00001121
Q ss_pred HHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 105 ASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 105 ~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
..++.+..+....+.++++++++.+|++++++.+++|+++++++++++||++++.+++|+++++.|++++.+.|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~ 296 (302)
T TIGR00817 222 VSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKA 296 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhc
Confidence 122222222233334666899999999999999999999999999999999999999999999999999987554
No 9
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.65 E-value=1e-15 Score=111.72 Aligned_cols=125 Identities=26% Similarity=0.413 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHH
Q 027773 46 FSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVM 125 (219)
Q Consensus 46 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al 125 (219)
++||.+.+..|+..++. ++...+++++..+.+ +++...+... .. +...+...+..+++.+++++.+++.++++++
T Consensus 1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGR-KP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYAL 75 (126)
T ss_pred ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcc-cc--ccCCChhhhhhhhHhhccceehHHHHHHHHH
Confidence 47999999999999998 599999999999998 6666655444 21 2222335677788899988999999999999
Q ss_pred hhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773 126 KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 126 ~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~ 175 (219)
++.+++.++++.+++|+++.++++++++|++++.+++|+++++.|+++..
T Consensus 76 ~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 76 KYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998764
No 10
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.61 E-value=5.5e-14 Score=119.21 Aligned_cols=152 Identities=16% Similarity=0.238 Sum_probs=124.7
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHH
Q 027773 27 SGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVAS 106 (219)
Q Consensus 27 ~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 106 (219)
++.++.+...|+++++++++++|+++++.++..++.+ ......+.-+++.++..+...+.++...+..... .....+
T Consensus 159 ~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~~-~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~--~~~~~~ 235 (334)
T PF06027_consen 159 DSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKKAP-RVEFLGMLGLFGFIISGIQLAILERSGIESIHWT--SQVIGL 235 (334)
T ss_pred cCCCCCccchhHHHHHHHHHHHHHHHHHHHHhcccCC-HHHHHHHHHHHHHHHHHHHHHheehhhhhccCCC--hhhHHH
Confidence 3345677899999999999999999999999999985 7888888888999999888877776333332222 233333
Q ss_pred HhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773 107 VYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 181 (219)
Q Consensus 107 ~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~ 181 (219)
+....++...-|.+....++..+|+...+-..+..+++++++++++|+++++..++|.++|+.|.+++...++++
T Consensus 236 ~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 236 LVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 444445667778888999999999999999999999999999999999999999999999999999998766543
No 11
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.58 E-value=3.4e-14 Score=113.51 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=121.2
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773 30 TTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS 109 (219)
Q Consensus 30 ~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (219)
....+..|..+++.++.||++|.+..+|..+..+ .-.-+...+.+++++.+|+...-.+ ..+.++.-...-+..
T Consensus 142 ~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~ag-----~~l~~p~ll~laLgv 215 (292)
T COG5006 142 VWSLDPVGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQAG-----PALFSPSLLPLALGV 215 (292)
T ss_pred cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhcc-----hhhcChHHHHHHHHH
Confidence 3456789999999999999999999999987664 6677888999999999998863222 112222445566788
Q ss_pred HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
+++++.+.|++...++++++....+.+..++|.++.+.++++++|.+++.||+|++.|+.+..-..+.-+
T Consensus 216 avlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~ 285 (292)
T COG5006 216 AVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTAR 285 (292)
T ss_pred HHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999988886665443
No 12
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.58 E-value=3.1e-14 Score=118.95 Aligned_cols=134 Identities=17% Similarity=0.174 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCchH----HHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHH
Q 027773 35 IKGALMITAGCFSWSFFIILQAITLKAYPAEL----SLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSG 110 (219)
Q Consensus 35 ~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 110 (219)
..|..++++++++|++|.+..|+..++.+ +. ..+.+.+...++...+.....+. . .+. ..+..++.+++.+
T Consensus 143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~-~~~~~~~~~~~~~ 217 (281)
T TIGR03340 143 RKAYAWALAAALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHG-R--SMF-PYARQILPSATLG 217 (281)
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhc-c--chh-hhHHHHHHHHHHH
Confidence 46888999999999999998887654442 22 12223333222222222111111 1 111 1123456677888
Q ss_pred HhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhh
Q 027773 111 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYL 173 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l 173 (219)
.+.+.++|.+|++++++.++++++.+.+++|+++++++++++||++++.+++|+++++.|+++
T Consensus 218 ~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 218 GLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 889999999999999999999999999999999999999999999999999999999999876
No 13
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.49 E-value=2.5e-13 Score=114.28 Aligned_cols=132 Identities=11% Similarity=0.099 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchh-HHHHHhHHHhhhHH
Q 027773 39 LMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTK-LVASVYSGIICSGL 116 (219)
Q Consensus 39 ~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~g~~~~~i 116 (219)
+++++++++|+.|.+..|+..++.. +....+.+.+..+.....+. ... ....+. ..+.. +..++..|+ .+.+
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~-~~~~~~~~~~~~~g~-~t~i 225 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADS-STSHMG-QNPMSLNLLLIAAGI-VTTV 225 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccC-Cccccc-CCcHHHHHHHHHHHH-HHHH
Confidence 4688899999999998888753221 22333344444443332211 111 111111 11122 333334444 6789
Q ss_pred HHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 117 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 117 ~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
+|.+|++++++.++++++++.+++|+++++++++++||++++.+++|+++|++|+.+...
T Consensus 226 ~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~ 285 (296)
T PRK15430 226 PLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM 285 (296)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888777654
No 14
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.47 E-value=6.8e-13 Score=114.18 Aligned_cols=143 Identities=18% Similarity=0.189 Sum_probs=111.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCC------chHHHHHHHHHHHHHHHHHHHHHHhcCC-cccee----eccchh
Q 027773 34 SIKGALMITAGCFSWSFFIILQAITLKAYP------AELSLTAWICFFGTVEGTLAALIMERGK-ASIWA----IHWDTK 102 (219)
Q Consensus 34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~----~~~~~~ 102 (219)
...|++++++++++|+.+.++.|+..++.. ++.....+...+++++++++..+.+... ...+. ......
T Consensus 192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 467999999999999999999999987541 3555666668899999988877555311 11110 000112
Q ss_pred HHHHHhHHHhhhHHHHHHHHH----HHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773 103 LVASVYSGIICSGLTYYIQGI----VMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 103 ~~~l~~~g~~~~~i~~~l~~~----al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~ 177 (219)
+..+++ .++.+++++++|+. ++++++|...+..+++.|+++++++++++||++++.+++|+++++.|++++.+.
T Consensus 272 ~~~~l~-~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 272 KGIIIF-KIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 233344 45667999999984 999999999999999999999999999999999999999999999999998764
No 15
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.44 E-value=2.1e-12 Score=108.64 Aligned_cols=140 Identities=13% Similarity=0.146 Sum_probs=111.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCcccee--eccchhHHHHHhH
Q 027773 32 HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA--IHWDTKLVASVYS 109 (219)
Q Consensus 32 ~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~ 109 (219)
.+...|.+++++++++|+...+..|.. .+. ++....++|+.++.+++.++.... + +..... ..+...+ .....
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~-~-~~~~~~~~~~~~~~~-~~~~~ 78 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSIC-R-QWSYLKTLIQTPQKI-FMLAV 78 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHH-c-cHHHHHHHHcCHHHH-HHHHH
Confidence 355689999999999999999999765 566 589999999999988776665432 2 111100 0011223 23345
Q ss_pred HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
+.+..++.+.++++++++.+++.++++.++.|++++++++++++|+++..+++|+++.++|+.+...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 6667788899999999999999999999999999999999999999999999999999999988763
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.41 E-value=3.6e-12 Score=104.94 Aligned_cols=138 Identities=11% Similarity=0.159 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCC--ccceeec-cchhHHHHHhHHHh
Q 027773 36 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGK--ASIWAIH-WDTKLVASVYSGII 112 (219)
Q Consensus 36 ~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~-~~~~~~~l~~~g~~ 112 (219)
+|.+++++++++|+...++.|. ..+. ++....++|++++++++.++.....+.. ...++.. ....+..+...|++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4899999999999999999997 4566 5999999999999888766554332200 0111111 11223345555554
Q ss_pred hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
..+.+.++++++++++++.++.+.++.|+++++++++++||+++..+++|+++.++|+.+...
T Consensus 80 -~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 80 -IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred -HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999987653
No 17
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.41 E-value=9.6e-12 Score=103.14 Aligned_cols=136 Identities=19% Similarity=0.289 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHH-HHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHh
Q 027773 34 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTA-WICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 112 (219)
Q Consensus 34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 112 (219)
...|++++++++++|+.+.+..|+.. +. ++..... +... ............. . .. ......+..+.+.|++
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~-~--~~-~~~~~~~~~~~~~g~~ 223 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLLLFFLSG-F--GA-PILSRAWLLLLYLGVF 223 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHHHHHhcc-c--cc-cCCHHHHHHHHHHHHH
Confidence 57899999999999999999999887 54 3555555 3333 2222222221111 1 11 1122568888999999
Q ss_pred hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773 113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~ 177 (219)
++++++.+|++++++.++..++++.+++|++++++++++++|+++..+++|+++++.|+.+...+
T Consensus 224 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 224 STGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999998865
No 18
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.36 E-value=2.3e-11 Score=101.57 Aligned_cols=134 Identities=13% Similarity=0.111 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHH
Q 027773 38 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 117 (219)
Q Consensus 38 ~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~ 117 (219)
.++.++++++|+...+..|+..++.+ +. ..+++..+++.++++...... ...|+.+. ..++..+..+.+.....
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~ 76 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYLA--QVGWSRLP-ATFWLLLAISAVANMVY 76 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhcc--cCCCCCcc-hhhHHHHHHHHHHHHHH
Confidence 46889999999999999998877653 43 465666666666665543211 12233222 33444444555577888
Q ss_pred HHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773 118 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 118 ~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~ 177 (219)
+.++++++++.+++.++++.++.|+++++++++++||+++..+++|+++++.|+++....
T Consensus 77 ~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 77 FLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999987653
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.30 E-value=5.6e-11 Score=100.07 Aligned_cols=154 Identities=14% Similarity=0.171 Sum_probs=124.8
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC---chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhH
Q 027773 27 SGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP---AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKL 103 (219)
Q Consensus 27 ~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (219)
++....+..+|+++++++++.||+|.++.||...+.. |-..+-.+.-++..++++|..++......+.+.+|.....
T Consensus 238 ~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~ 317 (416)
T KOG2765|consen 238 SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQF 317 (416)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCcee
Confidence 4445566789999999999999999999999877763 2223333344455566665555544433456667776777
Q ss_pred HHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773 104 VASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 104 ~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~ 180 (219)
..+++.++++++++-++|.+|+--.++..+++-+.++.+.+++...++=+.++++..++|.+.|+.|.++++.....
T Consensus 318 ~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 318 SLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred EeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999875543
No 20
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.29 E-value=8.2e-11 Score=89.20 Aligned_cols=139 Identities=18% Similarity=0.208 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC------CchHHHHHHHHHHHHHHHHHHHHHHhcCCccce--eec------cchh
Q 027773 37 GALMITAGCFSWSFFIILQAITLKAY------PAELSLTAWICFFGTVEGTLAALIMERGKASIW--AIH------WDTK 102 (219)
Q Consensus 37 G~~~~l~sa~~~a~~~i~~k~~~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~------~~~~ 102 (219)
|.++++++.++.+++.++.|+..++. .++..+..+....+.+++++..++.|....... ... .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 67899999999999999999988872 288999999999999999999988776221111 000 1134
Q ss_pred HHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 103 LVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 103 ~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
+..++..|+++ ..-....++.+++.+|...+....+..+..+++++++++|++++.+++|+++.+.|.+++.+
T Consensus 81 ~~~~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 55555565544 56677778999999999999999999999999999999999999999999999999988753
No 21
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.29 E-value=7.7e-11 Score=101.61 Aligned_cols=141 Identities=12% Similarity=0.080 Sum_probs=116.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhh
Q 027773 35 IKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICS 114 (219)
Q Consensus 35 ~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 114 (219)
..-.+.+++.-++++.+.++.|...+..-++....++|+.+++++++++.+..++ .. .++......|..+...|+++
T Consensus 12 ~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~-~~-~~~~~~~~~~~~l~l~g~~g- 88 (358)
T PLN00411 12 AVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNR-SR-SLPPLSVSILSKIGLLGFLG- 88 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHH-hc-ccCcchHHHHHHHHHHHHHH-
Confidence 4467788999999999999999999886689999999999999999888765443 11 11111114566777788776
Q ss_pred HHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHH------hCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 115 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII------LAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 115 ~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~ll------l~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
.+.+.++++++++++++.++++.++.|++++++++++ ++|+++..+++|+++.++|+++....+
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~ 158 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYH 158 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHcc
Confidence 5667789999999999999999999999999999999 699999999999999999999877544
No 22
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.20 E-value=8.3e-10 Score=93.27 Aligned_cols=145 Identities=15% Similarity=0.194 Sum_probs=117.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHH--HhcCCcccee--eccchhHHHHHh
Q 027773 34 SIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALI--MERGKASIWA--IHWDTKLVASVY 108 (219)
Q Consensus 34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~--~~~~~~~~~l~~ 108 (219)
...|+++++++.++-+...+.+++..++++ ++...+++...++.+..++..+. .+. ..+.+. ...+..+..++.
T Consensus 152 ~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~-~~~~~~f~~~~p~~~~~l~~ 230 (303)
T PF08449_consen 152 SALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGE-FRSAIRFISAHPSVLLYLLL 230 (303)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhH-hhHHHHHHHHhHHHHHHHHH
Confidence 345999999999999999999999998765 67789999999999988877776 222 111111 122233444444
Q ss_pred HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773 109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~ 180 (219)
. .+...++..+.++..++.++...+....+.-+++++++++++++++++.+|+|+++++.|..+....+++
T Consensus 231 ~-s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k 301 (303)
T PF08449_consen 231 F-SLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKK 301 (303)
T ss_pred H-HHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhcc
Confidence 4 4466888888889999999999999999999999999999999999999999999999999999876654
No 23
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.19 E-value=6e-10 Score=93.60 Aligned_cols=131 Identities=9% Similarity=0.054 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHH
Q 027773 38 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 117 (219)
Q Consensus 38 ~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~ 117 (219)
.+..++..+.|+...+..|...++. +|...+++|+..++++++++... .+ . .. +...++......|.+.....
T Consensus 10 ~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~-~~-~--~~--~~~~~~~~~~~~g~~~~~~~ 82 (292)
T PRK11272 10 FGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLL-RG-H--PL--PTLRQWLNAALIGLLLLAVG 82 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHH-hC-C--CC--CcHHHHHHHHHHHHHHHHHH
Confidence 5567888999999999999888877 59999999999999988776543 22 1 11 12245666777887776777
Q ss_pred HHHHHHHH-hhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 118 YYIQGIVM-KDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 118 ~~l~~~al-~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
+.+++++. ++.+++.++.+.++.|+++.+++++ +||+++..+++|+++.++|+++...
T Consensus 83 ~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 83 NGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 88889998 9999999999999999999999985 7999999999999999999998764
No 24
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=99.18 E-value=6.4e-10 Score=82.19 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhH
Q 027773 36 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 115 (219)
Q Consensus 36 ~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 115 (219)
.|.++.+.+.++-+...++.|+.+++.+ ....... . . ...... . .....++.|+++.+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~----~-~~~~~~---~------------~p~~~i~lgl~~~~ 59 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-F----I-AALLAF---G------------LALRAVLLGLAGYA 59 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-H----H-HHHHHH---h------------ccHHHHHHHHHHHH
Confidence 4788999999999999999999988874 3321111 0 0 100000 0 01123678888999
Q ss_pred HHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHH--HhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 116 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI--ILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 116 i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~l--ll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
+++.+|.+++++.+++.+.++....+++..+.++. ++||++++.+++|+++|++|+++..+.+
T Consensus 60 la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 60 LSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999888888885 7999999999999999999999987543
No 25
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.18 E-value=2.3e-11 Score=98.20 Aligned_cols=165 Identities=10% Similarity=0.051 Sum_probs=127.3
Q ss_pred CCccccccCcCcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHH
Q 027773 8 GPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIM 87 (219)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 87 (219)
|.++..--.-++-++..+.+++..+.+..|...++.+++.-+.-+++.|+..|+.. ....+.+..+++.+..++.....
T Consensus 163 GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~~i 241 (346)
T KOG4510|consen 163 GVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCASI 241 (346)
T ss_pred eEEEEecCCcccCCCccccccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHhhc
Confidence 55555544455555555555555677788999999999999999999999988773 55555566666666665444322
Q ss_pred hcCCccceeecc-chhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHH
Q 027773 88 ERGKASIWAIHW-DTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAII 166 (219)
Q Consensus 88 ~~~~~~~~~~~~-~~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~l 166 (219)
..+++|. ..+|+.++.+|+++ .+++.+.+.++|+-.|..+++..+++.+++.++.+++++|.|+++.|.|+++
T Consensus 242 -----g~~~lP~cgkdr~l~~~lGvfg-figQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~ 315 (346)
T KOG4510|consen 242 -----GAVQLPHCGKDRWLFVNLGVFG-FIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVM 315 (346)
T ss_pred -----cceecCccccceEEEEEehhhh-hHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceee
Confidence 1344432 36788888899855 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhccCC
Q 027773 167 IIGGLYLVVWGKS 179 (219)
Q Consensus 167 i~~gv~l~~~~~~ 179 (219)
++...+.+..+|.
T Consensus 316 vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 316 VVSSTVWVALKKW 328 (346)
T ss_pred eehhHHHHHHHHH
Confidence 9988887766554
No 26
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.15 E-value=2.6e-10 Score=82.48 Aligned_cols=108 Identities=19% Similarity=0.314 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHH
Q 027773 70 AWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMST 149 (219)
Q Consensus 70 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~ 149 (219)
.++..++.+++..+.....+ ..+.++......+..++..|++....++.++++++++.++ .++++..+.|+++.++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~ 79 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGR-LRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSW 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHHcc-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHH
Confidence 35666666766666654322 1111221112445556667777777899999999999995 888999999999999999
Q ss_pred HHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 150 IILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 150 lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
++++|+++..+++|++++++|+.+..+.+.
T Consensus 80 ~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 80 LFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999987554
No 27
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.14 E-value=7.5e-10 Score=91.03 Aligned_cols=119 Identities=13% Similarity=0.054 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHHhh
Q 027773 48 WSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKD 127 (219)
Q Consensus 48 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~ 127 (219)
|+...+..|...+...++....+++++.+.+.+.+.... . +....+..++..|.++..+.+.++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~----~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~ 70 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR----R------PPLKRLLRLLLLGALQIGVFYVLYFVAVKR 70 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh----c------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777788877665568888999998888877665431 1 122456667778888889999999999999
Q ss_pred cCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 128 RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 128 ~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
.+++.++++..++|+++.+++++++||++++.+++|+++.++|+.+...
T Consensus 71 ~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 71 LPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred cChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 9999999999999999999999999999999999999999999988764
No 28
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.13 E-value=2.7e-09 Score=84.99 Aligned_cols=149 Identities=11% Similarity=0.100 Sum_probs=122.9
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCcc--ceeeccch
Q 027773 25 GSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKAS--IWAIHWDT 101 (219)
Q Consensus 25 ~~~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~ 101 (219)
..++-.......|.++.+++...-++....+.|..+.+. +...++++..+++.+.+..-.++.+. -++ .+....+.
T Consensus 161 Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGE-lweF~yF~~RhP~ 239 (337)
T KOG1580|consen 161 KVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGE-LWEFFYFVQRHPY 239 (337)
T ss_pred ccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhh-HHHHHHHHHhccH
Confidence 455666677789999999999999999998988877654 56788999999999888766554433 221 12223346
Q ss_pred hHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773 102 KLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 102 ~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~ 175 (219)
.|+.+...++ ++++++++.+.-+...+|-.-+.+....-.|+++.++++++.+++..||+|.++++.|+.+=.
T Consensus 240 ~~~~l~l~ai-~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 240 VFWDLTLLAI-ASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHH-HHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 7888888877 779999999999999999999999999999999999999999999999999999999988744
No 29
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.13 E-value=1.1e-09 Score=92.04 Aligned_cols=132 Identities=13% Similarity=0.041 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhh
Q 027773 35 IKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICS 114 (219)
Q Consensus 35 ~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 114 (219)
..+.+++++++++|+...+..|...+..+ |....++|+.++++++.++. .. + ..+ . ..+..++ .+.+..
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~---~~-~--~~~--~-~~~~~~~-~~~l~~ 71 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV---GF-P--RLR--Q-FPKRYLL-AGGLLF 71 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc---cc-c--ccc--c-ccHHHHH-HHhHHH
Confidence 34678899999999999999999998885 99999999999988876542 11 1 111 0 1122222 333344
Q ss_pred HHHHHHHHHHHh----hcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773 115 GLTYYIQGIVMK----DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 115 ~i~~~l~~~al~----~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~ 177 (219)
.+.+.+++.+++ ..++..++.+.++.|+++.++++++++|++++.+++|+++.++|+++....
T Consensus 72 ~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~ 138 (295)
T PRK11689 72 VSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGG 138 (295)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecC
Confidence 455555666665 457778889999999999999999999999999999999999999887753
No 30
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.12 E-value=1.5e-09 Score=91.57 Aligned_cols=126 Identities=10% Similarity=0.098 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHH
Q 027773 38 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLT 117 (219)
Q Consensus 38 ~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~ 117 (219)
.+++++++++|+...+..|...++. +|....++|+.++++.++++. .. +.. .+..++..|++.....
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~---~~-~~~--------~~~~~~~~g~~~~~~~ 72 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFV---AR-PKV--------PLNLLLGYGLTISFGQ 72 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHh---cC-CCC--------chHHHHHHHHHHHHHH
Confidence 4678999999999999999988888 599999999998876654432 11 111 1222334455444455
Q ss_pred HHHHHHHHhh-cCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 118 YYIQGIVMKD-RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 118 ~~l~~~al~~-~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
+.+++.++++ .+++.++.+.++.|+++.++++++++|+++..+++|+++.++|+++...
T Consensus 73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 5677788887 6888999999999999999999999999999999999999999998874
No 31
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.12 E-value=9.1e-10 Score=92.49 Aligned_cols=132 Identities=16% Similarity=0.203 Sum_probs=100.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHH---HHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773 33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICF---FGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS 109 (219)
Q Consensus 33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (219)
+...|.+++++++++++.|.+..|+. ++ ++...++.++. ++++...+ ...+ . ..+ .. ...+..+..
T Consensus 149 ~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~---~~~~-~-~~~--~~-~~~~~~~~~ 217 (290)
T TIGR00776 149 NFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNL---GHIL-A-KPL--KK-YAILLNILP 217 (290)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHH---HHhc-c-cch--HH-HHHHHHHHH
Confidence 34679999999999999999999876 35 57777555554 23332221 1111 0 111 11 233334448
Q ss_pred HHhhhHHHHHHHHHHHh-hcCceeeeeccchHHHHHHHHHHHHhCCcCchHHH----HHHHHHHHhhhhhhc
Q 027773 110 GIICSGLTYYIQGIVMK-DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRI----IGAIIIIGGLYLVVW 176 (219)
Q Consensus 110 g~~~~~i~~~l~~~al~-~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~----lG~~li~~gv~l~~~ 176 (219)
|++ .++++.+|..+.+ +.+++.++.+.+.+|+.++++++++++|+.++.++ +|+++++.|+.+...
T Consensus 218 Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 218 GLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 887 6999999999999 99999999999999999999999999999999999 999999999988654
No 32
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.97 E-value=1.9e-08 Score=84.87 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHHhhcC
Q 027773 50 FFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRG 129 (219)
Q Consensus 50 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~~~ 129 (219)
.+++++|...+..+.|...+.+++.++.+...+. +.... ....+.+. .+|..++..|++. ...+.+.++++++++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~-~~~~~~~~~g~~~-~~~~~~~~~~l~~~s 90 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLS-WSSGL--PKRLKISS-ALLKLLLPVAIVH-TIGHVTSNVSLSKVA 90 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHH-HHhCC--CCCCCCCH-HHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 3456789999886679999999999887776544 11111 11112222 5677788888874 777899999999999
Q ss_pred ceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773 130 PVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 130 a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~ 175 (219)
++.++++..+.|++++++++++++|+++..+++|++++++|+.+..
T Consensus 91 ~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 91 VSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999998754
No 33
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.94 E-value=1.3e-08 Score=83.47 Aligned_cols=144 Identities=10% Similarity=0.183 Sum_probs=117.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCcccee-eccchhHHHHHhHH
Q 027773 32 HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWA-IHWDTKLVASVYSG 110 (219)
Q Consensus 32 ~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~g 110 (219)
++...|+++++.+-+.|+......|-+ ++.| +..+...|.+.+..++..+.....+ ....++ ...+..+..++..+
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~-~~~~~~~~~~p~~~~~~~l~a 79 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPLYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQ-WRELKQLLKQPKTLLMLALTA 79 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCcHHHHHHHHHH
Confidence 344679999999999999988877655 6664 8899999999999998877765543 222222 23345677777776
Q ss_pred HhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 111 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
++. ..-+.+|.||...-.+..+|+-.+++|++.+++|.+++||+++..|++.+++..+|+..-.+...
T Consensus 80 ~li-~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 80 LLI-GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred HHH-HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 644 77799999999999999999999999999999999999999999999999999999988776543
No 34
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.94 E-value=3.8e-08 Score=84.79 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeec-cchhHHHHHhHHHhhhHHHHHHHHHH
Q 027773 46 FSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIH-WDTKLVASVYSGIICSGLTYYIQGIV 124 (219)
Q Consensus 46 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~g~~~~~i~~~l~~~a 124 (219)
.+-..+.+..|...+..|-|+.++.+|++++.++..++. .... . ..++.. ....+..++..|++... .+...+.+
T Consensus 59 ~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~-~~~~-~-~~~~~~~~~~~~~~llp~gl~~~~-~~~~~~~s 134 (350)
T PTZ00343 59 ALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYW-ATGF-R-KIPRIKSLKLFLKNFLPQGLCHLF-VHFGAVIS 134 (350)
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHH-HhCC-C-CCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333456778899999884499999999999987765442 2211 1 111221 22356777888886644 46667799
Q ss_pred HhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 125 MKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 125 l~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
+++.+++.+.++..++|++++++++++++|+++..++++++++++|+++...
T Consensus 135 l~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~ 186 (350)
T PTZ00343 135 MGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV 186 (350)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence 9999999999999999999999999999999999999999999999998764
No 35
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.85 E-value=2.7e-08 Score=71.69 Aligned_cols=67 Identities=19% Similarity=0.295 Sum_probs=61.9
Q ss_pred HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773 109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~ 175 (219)
.++++.++++.++.+++++++.+.+-++.++.++++.+++++++||++++.+++|++++++|+.+..
T Consensus 42 ~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 42 LALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3346678899999999999999999999999999999999999999999999999999999998764
No 36
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.83 E-value=1.5e-07 Score=77.86 Aligned_cols=143 Identities=13% Similarity=0.226 Sum_probs=107.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHh
Q 027773 33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 112 (219)
Q Consensus 33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 112 (219)
....+..+.+..++.|+......|.......+.......+...+.+...+... . . .....+.. ..+......+.+
T Consensus 4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~--~~~~~~~~~~~~ 78 (292)
T COG0697 4 ALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLL-L-E-PRGLRPAL--RPWLLLLLLALL 78 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-h-h-cccccccc--cchHHHHHHHHH
Confidence 34678888999999999999988888776223555555577777666322221 1 1 11111111 224455667777
Q ss_pred hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHH-HHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773 113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMST-IILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~-lll~E~~~~~~~lG~~li~~gv~l~~~~~~~ 180 (219)
.....+.+++.++++.++..++++.++.|+++.++++ ++++|++++.++.|..+.+.|+++..+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 79 GLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 8899999999999999999999999999999999997 6779999999999999999999999875543
No 37
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.73 E-value=2e-07 Score=78.37 Aligned_cols=132 Identities=19% Similarity=0.175 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHH
Q 027773 37 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 116 (219)
Q Consensus 37 G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i 116 (219)
|.+++++++++|+...+..|+.. ..+ +.... +..++.++...+..+... +. .. ....+..-+..|+ .-.+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~-~~~~~--~~~~g~l~~~~~~~~~~~-~~--~~--~~~~~~~g~l~G~-~w~i 71 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGP-YSQTL--GTTFGALILSIAIAIFVL-PE--FW--ALSIFLVGLLSGA-FWAL 71 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCH-HHHHH--HHHHHHHHHHHHHHHHhC-Cc--cc--ccHHHHHHHHHHH-HHHh
Confidence 67899999999999999888775 332 33333 455566655554443332 11 11 1122222222333 3577
Q ss_pred HHHHHHHHHhhcCceeeeeccc-hHHHHHHHHHHHHhCCcCchHH----HHHHHHHHHhhhhhhccC
Q 027773 117 TYYIQGIVMKDRGPVFVAAFSP-LCMVIVAIMSTIILAEQMYLGR----IIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 117 ~~~l~~~al~~~~a~~~s~~~~-l~Pv~~~l~~~lll~E~~~~~~----~lG~~li~~gv~l~~~~~ 178 (219)
++.+|+.++++.+.+.+.++.+ ++++++.+++.+++||+.+..+ ++|.++++.|+++....+
T Consensus 72 g~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 72 GQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred hhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 8899999999999999999999 9999999999999999999999 999999999999886543
No 38
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=98.73 E-value=2.9e-08 Score=83.68 Aligned_cols=153 Identities=14% Similarity=0.146 Sum_probs=115.5
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhh--CC-chHHHHHHHHHHHHHHHH-HHHHHHhcCCccc-eee-ccchh
Q 027773 29 TTTHNSIKGALMITAGCFSWSFFIILQAITLKA--YP-AELSLTAWICFFGTVEGT-LAALIMERGKASI-WAI-HWDTK 102 (219)
Q Consensus 29 ~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~--~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~-~~~-~~~~~ 102 (219)
.+.+-+..|.++++++.+..+...++.|+..++ .. +++....++..++.+.++ |.....++ .... +.. +++..
T Consensus 156 ~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~-~~~~~~~~~~~~~~ 234 (316)
T KOG1441|consen 156 TELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEG-NKFVGFLTAPWFVT 234 (316)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcc-cceeeeeccccchh
Confidence 344566889999999999999999999999852 22 788999999999999998 76665555 2220 011 11112
Q ss_pred HHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCC
Q 027773 103 LVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH 182 (219)
Q Consensus 103 ~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~ 182 (219)
...+++..+ +...-...-++.+.+++|...++.+.+.-++.++.+++++++++++.+.+|+++.++|++++.+.|.+++
T Consensus 235 ~~~~~~~sv-~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 235 FLILLLNSV-LAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 222222222 3233345556889999999999999999999999999999999999999999999999999998776654
Q ss_pred C
Q 027773 183 K 183 (219)
Q Consensus 183 ~ 183 (219)
+
T Consensus 314 ~ 314 (316)
T KOG1441|consen 314 K 314 (316)
T ss_pred c
Confidence 3
No 39
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.69 E-value=3.4e-07 Score=75.30 Aligned_cols=134 Identities=10% Similarity=0.098 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHH
Q 027773 40 MITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYY 119 (219)
Q Consensus 40 ~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~ 119 (219)
.++.-++.|+.|..+-|+. + . ++.+-....++.-....+.+.+..++ ..+.........+..++..|. .|.+...
T Consensus 152 val~la~sf~~Ygl~RK~~-~-v-~a~~g~~lE~l~l~p~al~yl~~l~~-~~~~~~~~~~~~~~LLv~aG~-vTavpL~ 226 (293)
T COG2962 152 VALALALSFGLYGLLRKKL-K-V-DALTGLTLETLLLLPVALIYLLFLAD-SGQFLQQNANSLWLLLVLAGL-VTAVPLL 226 (293)
T ss_pred HHHHHHHHHHHHHHHHHhc-C-C-chHHhHHHHHHHHhHHHHHHHHHHhc-CchhhhcCCchHHHHHHHhhH-HHHHHHH
Confidence 4566678899988855544 2 2 45666666666666666555554444 221011122245666777776 6799999
Q ss_pred HHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 120 IQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 120 l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
+|..+-++++-+..+.+.|.+|..-.+++++++||+++..+++..++|-+|+.++....
T Consensus 227 lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 227 LFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987643
No 40
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.67 E-value=2.1e-07 Score=76.53 Aligned_cols=107 Identities=9% Similarity=0.001 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHH
Q 027773 39 LMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTY 118 (219)
Q Consensus 39 ~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~ 118 (219)
+++++++++|+.|.+..|+..++. ........ +.......+... ..+ .......+....|..+++.|++ +.++|
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~l~~~g~~-t~i~~ 222 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKNTD--LAGFCLET-LSLMPVAIYYLL-QTD-FATVQQTNPFPIWLLLVLAGLI-TGTPL 222 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--cchHHHHH-HHHHHHHHHHHH-Hhc-cCcccccCchhHHHHHHHHHHH-HHHHH
Confidence 467889999999999988875432 22222111 111111111111 111 1111111122367788888875 89999
Q ss_pred HHHHHHHhhcCceeeeeccchHHHHHHHHHHHH
Q 027773 119 YIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTII 151 (219)
Q Consensus 119 ~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~ll 151 (219)
.+|++++++.++++++++.|++|++++++++++
T Consensus 223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999764
No 41
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.66 E-value=1.6e-07 Score=77.56 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=121.6
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceee--ccchh
Q 027773 26 SSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAI--HWDTK 102 (219)
Q Consensus 26 ~~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~ 102 (219)
.+.++..+..+|..++...-++=+..+..++++.+++. +++.++.+..+++++..... ++..+.......+ ..+..
T Consensus 162 ~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~-li~qg~~~~av~F~~~hp~~ 240 (327)
T KOG1581|consen 162 SSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTY-LILQGHLLPAVSFIKEHPDV 240 (327)
T ss_pred ccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHh-hhcCCCCchHHHHHHcChhH
Confidence 34455577789999999999999999999999998754 78899999999998888766 3333311111111 12234
Q ss_pred HHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773 103 LVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 103 ~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~ 180 (219)
++-++.... +..+++.+.++-+++.|+-..+.++.+.-.++++++.+.++.++++.||+|..+++.|+.+-...+++
T Consensus 241 ~~Di~l~s~-~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 241 AFDILLYST-CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHH-hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 555555555 55899999999999999999999999999999999999999999999999999999999987655444
No 42
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.66 E-value=8e-07 Score=74.72 Aligned_cols=130 Identities=13% Similarity=0.037 Sum_probs=100.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHH
Q 027773 32 HNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGI 111 (219)
Q Consensus 32 ~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 111 (219)
-+...|..++++++++|+....+.|...++. ++....++|+.+++++++++... .. ...+. .++...+..|+
T Consensus 8 ~~~~~~~~~~~la~~~~~~~~~~~K~~~~~~-~~~~~~~~R~~~a~l~l~~~~~~-~~-----~~~~~-~~~~~~~~~g~ 79 (293)
T PRK10532 8 LPVWLPILLLLIAMASIQSGASLAKSLFPLV-GAPGVTALRLALGTLILIAIFKP-WR-----LRFAK-EQRLPLLFYGV 79 (293)
T ss_pred cccchHHHHHHHHHHHHHhhHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHhH-Hh-----ccCCH-HHHHHHHHHHH
Confidence 3446799999999999999999999999888 49999999999999888765421 11 11111 45555666776
Q ss_pred hhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 112 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 112 ~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
+ .+..+.++++++++++++.++.+.++.|+++.+++ +|++. +..++.+.++|+++...
T Consensus 80 ~-~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--~~~~~~i~~~Gv~li~~ 137 (293)
T PRK10532 80 S-LGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--DFVWVVLAVLGLWFLLP 137 (293)
T ss_pred H-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--HHHHHHHHHHHHheeee
Confidence 4 47778889999999999999999999999998877 35554 45566777888887653
No 43
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.63 E-value=1.6e-07 Score=75.85 Aligned_cols=146 Identities=15% Similarity=0.253 Sum_probs=113.7
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHH
Q 027773 26 SSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVA 105 (219)
Q Consensus 26 ~~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (219)
.+..++.+...|+.+.++++-++|..++....+.|+. +...++....++|+++..+- +++++.+ ...+.++.....
T Consensus 156 gd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ-~i~~~~~--~~tl~w~~~i~~ 231 (336)
T KOG2766|consen 156 GDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQ-FIFERHH--VSTLHWDSAIFL 231 (336)
T ss_pred ccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHH-Hhhhccc--eeeEeehHHHHH
Confidence 4666777888999999999999999999999999998 58889999999999999877 4555412 222222223332
Q ss_pred HHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 106 SVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 106 l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
++. ..++...-|.+.-..++.-+++...+-..+.-.|++++ ..||-..+|...+..+.+..|.+++..++
T Consensus 232 yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 232 YLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred HHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 222 34455555666677788899999999999999999988 78888899999999999999999985443
No 44
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.46 E-value=5.4e-06 Score=70.72 Aligned_cols=138 Identities=16% Similarity=0.090 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhH
Q 027773 36 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 115 (219)
Q Consensus 36 ~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 115 (219)
.|.+++++-+..-.....+..+ .-.. |...+++....-.+...+... ..+ ....+.......|+..+..+++- .
T Consensus 17 lgQ~lsl~~~~t~~~s~~l~~~-~~~~--P~~Qs~~~Y~~l~~vy~~~~~-~r~-~~~~~~~~~~~~~w~y~lla~~D-v 90 (334)
T PF06027_consen 17 LGQVLSLCITGTGTFSSLLANK-GVNI--PTFQSFFNYVLLALVYTPILL-YRR-GFKKWLKVLKRPWWKYFLLALLD-V 90 (334)
T ss_pred HHHHHHHHHHhHHHHHHHHHhc-CccC--cHHHHHHHHHHHHHHHhhhhh-hcc-ccccchhhcchhHHHHHHHHHHH-H
Confidence 4555555555554444444433 1222 444444444333333333222 222 11222211124566666677654 7
Q ss_pred HHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 116 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 116 i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
.+.++...|+++++.+-+.++.....++++++++++++++.++.+++|++++++|+.++.....
T Consensus 91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 8899999999999999999999999999999999999999999999999999999998876543
No 45
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=98.35 E-value=9.8e-06 Score=58.98 Aligned_cols=69 Identities=17% Similarity=0.363 Sum_probs=58.4
Q ss_pred HHhhhHHHHHHHHHHHhhcCceeeeec-cchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 110 GIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 110 g~~~~~i~~~l~~~al~~~~a~~~s~~-~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
.++..+++++++..++++++.+.+=.+ .-+.-+.+.+++++++||++++.+++|+++|++|++......
T Consensus 36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 344558889999999999998765444 568888899999999999999999999999999999886533
No 46
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.33 E-value=2.9e-06 Score=68.38 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=88.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHH-HHHHHHHHHHHHHHHHHHHhcCCc-ccee--eccchhHHHHHh
Q 027773 33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSL-TAWICFFGTVEGTLAALIMERGKA-SIWA--IHWDTKLVASVY 108 (219)
Q Consensus 33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~-~~~~--~~~~~~~~~l~~ 108 (219)
+...|..+.+.++++-+...+.+++..|+....... .....+.+.+... ......+... ..+. ...+...+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 156 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTF-SVLLWSDGTLISNFGFFIGYPTAVW---- 156 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHH-HHHhhcccchhhccCcccCCchHHH----
Confidence 556788888888888888888888876654311111 1111222222211 1111111010 1111 01111222
Q ss_pred HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhh
Q 027773 109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV 174 (219)
Q Consensus 109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~ 174 (219)
.-++...++..+..+.+++.++...+....++++++.++++++++|+++..+++|+.+++.|++++
T Consensus 157 ~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 157 IVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 222344667778889999999999999999999999999999999999999999999999998753
No 47
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.25 E-value=6.1e-05 Score=61.76 Aligned_cols=174 Identities=13% Similarity=0.061 Sum_probs=112.4
Q ss_pred EeeeeeCCccccccCcCcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHH
Q 027773 2 VMTLIKGPILELFWTKGAENHGHGSSGTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEG 80 (219)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~ 80 (219)
|-||++++-++.-.+.+. +.+..++-..+..|+.+...+.+.-|...+.+++.-+++. ++-..+++....+....
T Consensus 134 IcTl~s~~d~~~~~~~l~----~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~F 209 (330)
T KOG1583|consen 134 ICTLFSSKDGRSKLSGLD----SGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLF 209 (330)
T ss_pred eEEeecCcchhhhhcccc----cCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchH
Confidence 446666665553121221 2233445566678999999999999999998888888765 55677888887776655
Q ss_pred HHHHH-HHhc----CCcccee-----eccchhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHH
Q 027773 81 TLAAL-IMER----GKASIWA-----IHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI 150 (219)
Q Consensus 81 ~~~~~-~~~~----~~~~~~~-----~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~l 150 (219)
+++.- +... ...+... ..-|..|+.++.- ++....+----+.--.+.++-.+++...+.-.+..+++++
T Consensus 210 lf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n-~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~Sii 288 (330)
T KOG1583|consen 210 LFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFN-VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSII 288 (330)
T ss_pred HHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHH-HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheee
Confidence 44331 0000 0001111 1122445554433 2233333333334445677788999999999999999999
Q ss_pred HhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773 151 ILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 151 ll~E~~~~~~~lG~~li~~gv~l~~~~~~~ 180 (219)
.++.+++++-|+|+.+++.|.++.....++
T Consensus 289 yF~Npft~~h~lGa~lVF~Gt~~fa~~~~~ 318 (330)
T KOG1583|consen 289 YFENPFTPWHWLGAALVFFGTLLFANVWNH 318 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999987654433
No 48
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=1.5e-05 Score=66.43 Aligned_cols=154 Identities=11% Similarity=0.106 Sum_probs=120.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCcccee---eccchhH
Q 027773 28 GTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWA---IHWDTKL 103 (219)
Q Consensus 28 ~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~ 103 (219)
.++..-+..|..+++..+++-+.+.+..|+..+... +.+.++.+..+.+...+....++++..+..... ...+..+
T Consensus 149 ~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~ 228 (314)
T KOG1444|consen 149 FTDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVL 228 (314)
T ss_pred cccceecchhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHH
Confidence 344445556999999999999999999999877643 567888999999988888888766642200111 1223457
Q ss_pred HHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCC
Q 027773 104 VASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH 182 (219)
Q Consensus 104 ~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~ 182 (219)
..+.+.++++.++.|+. .++.+..+++..++.....-..+.+...++.+++.++..++|..+-++|-.++...+.+++
T Consensus 229 ~~~~lScv~gf~isy~s-~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k 306 (314)
T KOG1444|consen 229 VVMLLSCVMGFGISYTS-FLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK 306 (314)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence 77888888887776665 6899999999999999888888888888889999999999999999999999887665443
No 49
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.24 E-value=1.8e-06 Score=68.49 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=117.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccc-hhHHHHHhHH
Q 027773 33 NSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD-TKLVASVYSG 110 (219)
Q Consensus 33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~g 110 (219)
....|.+++...++.-+.+.+..|+..+-.+ .....++|..+.+..++..+.++++++.........+ -...++...|
T Consensus 152 ~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISg 231 (309)
T COG5070 152 ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISG 231 (309)
T ss_pred ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHH
Confidence 3456999999999999999999988876543 4678899999999999999998887644332222111 2355677788
Q ss_pred HhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCC
Q 027773 111 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH 182 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~ 182 (219)
+.+.+++| +-.|.++-++.+..+++..++-.-..+.|.++++|+.+...+....+......++...+.+.+
T Consensus 232 l~svgiSy-~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~ 302 (309)
T COG5070 232 LCSVGISY-CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQ 302 (309)
T ss_pred HHHhhhhh-ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 86655554 557999999999999999999999999999999999999999999998877777766554433
No 50
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.23 E-value=4.1e-05 Score=64.66 Aligned_cols=126 Identities=14% Similarity=0.071 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhhCC-c--hHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHHh
Q 027773 50 FFIILQAITLKAYP-A--ELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMK 126 (219)
Q Consensus 50 ~~~i~~k~~~~~~~-~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~ 126 (219)
.+.+.+++..++.. . +..+++.++....+...+....... + .... ..+...+..++ ...++..+-+.+++
T Consensus 14 ~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-~-~~~~----~~~~~~~~~~~-~~~~~~~~~~~al~ 86 (303)
T PF08449_consen 14 SYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-P-KSRK----IPLKKYAILSF-LFFLASVLSNAALK 86 (303)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-c-CCCc----ChHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34566777766543 3 6688888888888777665543321 1 1111 22333344444 55777888999999
Q ss_pred hcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCC
Q 027773 127 DRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH 182 (219)
Q Consensus 127 ~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~ 182 (219)
+++.....++....|+.+++++++++|++.+..++++++++.+|+.+....+.+.+
T Consensus 87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred hCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 99999999999999999999999999999999999999999999999887654433
No 51
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.22 E-value=9.8e-07 Score=71.79 Aligned_cols=137 Identities=12% Similarity=0.082 Sum_probs=95.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHh
Q 027773 33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGII 112 (219)
Q Consensus 33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~ 112 (219)
....|.++.-++ ..+....++.++..... |.....-++++-.+...+..+... ++.+.....-.++++-|+.
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~~--p~e~a~~r~l~~mlit~pcliy~~-----~~v~gp~g~R~~LiLRg~m 106 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEND--PMELASFRLLVRMLITYPCLIYYM-----QPVIGPEGKRKWLILRGFM 106 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhccC--hhHhhhhhhhhehhhhheEEEEEe-----eeeecCCCcEEEEEeehhh
Confidence 345688888888 66666677777676654 555555555444444433332211 1111111111223445553
Q ss_pred hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
+ ..+..+.+|++++++-+.+.++..+.|+++++++|++++|+.+....+|..+-+.|+++..+..
T Consensus 107 G-~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 107 G-FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred h-hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 3 5667888999999999999999999999999999999999999999999999999999988643
No 52
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=98.19 E-value=0.00012 Score=62.06 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=100.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHH-HHHHHHHHHHHHHHhcCCcccee-eccchhHHH
Q 027773 28 GTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWIC-FFGTVEGTLAALIMERGKASIWA-IHWDTKLVA 105 (219)
Q Consensus 28 ~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 105 (219)
.....+...|....+.+++.-+...+...+.+|+...+..+.-.++ +.|.++.+...+..+. ....|. +. ..|-.
T Consensus 175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~-~~i~~~gff--~G~s~ 251 (345)
T KOG2234|consen 175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDG-EAINEYGFF--YGYSS 251 (345)
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccc-cccccCCcc--ccccH
Confidence 4556777899999999999999999999999987653333333333 4455544444333222 211111 11 12222
Q ss_pred HHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773 106 SVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 106 l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~ 180 (219)
..+.-++..+++=.+...-+++.+--.=.....+..+++.+.++.+++-+++....+|+.+|+.++.++...+.+
T Consensus 252 ~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~ 326 (345)
T KOG2234|consen 252 IVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPAR 326 (345)
T ss_pred HHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 233333344444455556677777766666777899999999999999999999999999999999999844433
No 53
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=98.16 E-value=8.2e-05 Score=55.66 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHH
Q 027773 37 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 116 (219)
Q Consensus 37 G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i 116 (219)
..++++.+.++.++...++.++.++..+++..+++.+..+.+.+.++.++.++ . .+....+..|+.++ .|+ ...+
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~-~--~~~~~~~~p~w~~l-GG~-lG~~ 76 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGR-P--SLASLSSVPWWAYL-GGL-LGVF 76 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcc-c--ccchhccCChHHhc-cHH-HHHH
Confidence 46788999999999999999998887568999999999999999888776655 2 22211113344333 555 4466
Q ss_pred HHHHHHHHHhhcCceeeeeccch-HHHHHHHHHHH----HhCCcCchHHHHHHHHHHHhhhh
Q 027773 117 TYYIQGIVMKDRGPVFVAAFSPL-CMVIVAIMSTI----ILAEQMYLGRIIGAIIIIGGLYL 173 (219)
Q Consensus 117 ~~~l~~~al~~~~a~~~s~~~~l-~Pv~~~l~~~l----ll~E~~~~~~~lG~~li~~gv~l 173 (219)
.-.+..+.+++++++....+... |-+.+++++.+ .-++++++.+.+|++++++|+++
T Consensus 77 ~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 77 FVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 67777899999999877766555 55556666765 24788999999999999999864
No 54
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.15 E-value=1.4e-05 Score=67.41 Aligned_cols=122 Identities=20% Similarity=0.195 Sum_probs=91.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHH
Q 027773 31 THNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSG 110 (219)
Q Consensus 31 ~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 110 (219)
+.++..|.++++.++++.+...+++|+...+.+ .-..-.-. . .... ..++.+| .|
T Consensus 2 ~~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~-~~~~~~~~---~-----~~~~-----------l~~~~W~-----~G 56 (300)
T PF05653_consen 2 NTDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLP-RGSLRAGS---G-----GRSY-----------LRRPLWW-----IG 56 (300)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccccc---h-----hhHH-----------HhhHHHH-----HH
Confidence 356788999999999999999999999877664 21100000 0 0010 0010122 34
Q ss_pred HhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773 111 IICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~ 177 (219)
++..+++..+.+.|+...|++.++++..+.-++..+++..+++|+++...++|+++++.|..+....
T Consensus 57 ~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~ 123 (300)
T PF05653_consen 57 LLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIF 123 (300)
T ss_pred HHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEe
Confidence 4444666778888999999999999999999999999999999999999999999999999876543
No 55
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.15 E-value=1.2e-05 Score=65.76 Aligned_cols=148 Identities=13% Similarity=0.191 Sum_probs=114.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceee--ccchhHHHHH
Q 027773 31 THNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAI--HWDTKLVASV 107 (219)
Q Consensus 31 ~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ 107 (219)
.+-+..|.++.-++-++=|.--.++.+.++..| +...+.++...+|.+.++......+. ....|+. ..+..-...+
T Consensus 185 PNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge-~f~a~~fcaehp~~tyGy~ 263 (367)
T KOG1582|consen 185 PNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGE-LFSAWTFCAEHPVRTYGYA 263 (367)
T ss_pred CCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhccc-chhhhHHHHhCcHhHHHHH
Confidence 344467999999999999998888999999877 45677788888888888777665544 4444442 1112122233
Q ss_pred hHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 108 YSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
+.-.+.+.++...-..-++..|+..++.+....-..++++++++|..+++....-|..+++.|+++....++
T Consensus 264 ~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 264 FLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 333346677777777778889999999999999999999999999999999999999999999999887663
No 56
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=98.11 E-value=6.1e-05 Score=54.05 Aligned_cols=68 Identities=19% Similarity=0.364 Sum_probs=57.0
Q ss_pred HhhhHHHHHHHHHHHhhcCceee-eeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 111 IICSGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~a~~~-s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
+++.+++++++..++++++.+.+ +...-+.-+.+++++++++||++++.+++|++++++|++..+...
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44557888899999999988665 444567888889999999999999999999999999999986543
No 57
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=98.05 E-value=9.1e-05 Score=52.99 Aligned_cols=65 Identities=9% Similarity=0.184 Sum_probs=56.0
Q ss_pred HhhhHHHHHHHHHHHhhcCcee-eeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773 111 IICSGLTYYIQGIVMKDRGPVF-VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~a~~-~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~ 175 (219)
+++.++++++...++|++|.+. .+...-+.-+.+++.+++++||++++.+++|+.+++.|+...+
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 3355788999999999999854 4666778888889999999999999999999999999998764
No 58
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.97 E-value=0.00012 Score=52.12 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=57.0
Q ss_pred HhhhHHHHHHHHHHHhhcCcee-eeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 111 IICSGLTYYIQGIVMKDRGPVF-VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~a~~-~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
+++.++++++...++|+++.+. .+...-+..+.+.+.+++++||++++.+++|+.+++.|++..+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 4455788999999999999854 56677788889999999999999999999999999999998754
No 59
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=97.96 E-value=0.00048 Score=57.37 Aligned_cols=141 Identities=14% Similarity=0.182 Sum_probs=104.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhCC----chHHHHHHHHHHHHHHHHHHHHHHhcCCcc----ceeeccch---
Q 027773 33 NSIKGALMITAGCFSWSFFIILQAITLKAYP----AELSLTAWICFFGTVEGTLAALIMERGKAS----IWAIHWDT--- 101 (219)
Q Consensus 33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~--- 101 (219)
-...|..+.+++.++-++-..+.+..+++.| +|.+..+.....-.+.+++..+.+|+.... .|...++.
T Consensus 161 f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~ 240 (349)
T KOG1443|consen 161 FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLIL 240 (349)
T ss_pred eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHH
Confidence 4467999999999998888888888887765 678888888888888888888888873221 12222221
Q ss_pred -hHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhh
Q 027773 102 -KLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV 174 (219)
Q Consensus 102 -~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~ 174 (219)
....+...|..+.+..+ .-+.-+.+++.-..+...-..-+-+.+++..+.+|+++...|+|..++..|+...
T Consensus 241 rv~g~i~l~g~laF~l~~-sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 241 RVIGLISLGGLLAFLLEF-SEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 12223333333322222 2345678889999999999999999999999999999999999999999999987
No 60
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.95 E-value=7.9e-05 Score=63.78 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=92.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH-----HHhcCCccceeeccchhHHHHH
Q 027773 33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAAL-----IMERGKASIWAIHWDTKLVASV 107 (219)
Q Consensus 33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~ 107 (219)
+...|.++.+++++||+.+++-+|+ .++.+ +... |- ++.++.+++.. +..+.-.+..+..+...+..-+
T Consensus 4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~--wE~~-W~--v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~ 77 (345)
T PRK13499 4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWS--WETM-WS--VGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF 77 (345)
T ss_pred hhHHHHHHHHHHHHHhhcccccccc-cCCCc--hhHH-HH--HHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence 4578999999999999999998887 45552 3322 33 22223322222 1111011112212223454445
Q ss_pred hHHHhhhHHHHHHHHHHHhhcCceeeeecc-chHHHHHHHHHHHHhCCcC---c----hHHHHHHHHHHHhhhhhhcc
Q 027773 108 YSGIICSGLTYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQM---Y----LGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~~-~l~Pv~~~l~~~lll~E~~---~----~~~~lG~~li~~gv~l~~~~ 177 (219)
+.|+ .=.+++..+..+++++|.+...++. -++-+.+.+++.++++|.. + ..-.+|++++++|+++..+.
T Consensus 78 l~G~-~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 78 LFGA-LWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHH-HHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 5555 4488899999999999999888765 4778889999999999765 2 34688999999999998873
No 61
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.94 E-value=3.7e-05 Score=54.32 Aligned_cols=65 Identities=20% Similarity=0.400 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHhhcCce-eeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773 113 CSGLTYYIQGIVMKDRGPV-FVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 113 ~~~i~~~l~~~al~~~~a~-~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~ 177 (219)
+..++|.+...++++++.. -.+...-.-.+.+++.++++|||++++.+++|..++++|++..+..
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 4578899999999999984 4577788888889999999999999999999999999999987754
No 62
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.92 E-value=0.00017 Score=59.60 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=64.5
Q ss_pred hhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeecc-chHHHHHHHHHHHHhCCcCchHHH----HHHHHHHHhhhhhh
Q 027773 101 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGRI----IGAIIIIGGLYLVV 175 (219)
Q Consensus 101 ~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~-~l~Pv~~~l~~~lll~E~~~~~~~----lG~~li~~gv~l~~ 175 (219)
..++.-+..|+ .=.+++..++.++++++.+++.++. -++-+.+.++++++|||.-+..++ ++.+++++|+++..
T Consensus 43 ~~~~~~~lsG~-~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 43 TSFIVAFLSGA-FWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 34555555665 4588999999999999999999998 567777899999999999886654 47788889999988
Q ss_pred ccCCCCC
Q 027773 176 WGKSKDH 182 (219)
Q Consensus 176 ~~~~~~~ 182 (219)
+++++++
T Consensus 122 ~~~~~~~ 128 (269)
T PF06800_consen 122 YQDKKSD 128 (269)
T ss_pred ccccccc
Confidence 7665544
No 63
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.92 E-value=0.00038 Score=52.40 Aligned_cols=140 Identities=13% Similarity=0.062 Sum_probs=97.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhh
Q 027773 34 SIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIIC 113 (219)
Q Consensus 34 ~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 113 (219)
..+..++++++.++-.....++.|+.+...+|+...+..+.+|++.+..+.++.++ ...+....+..||. ..-|+++
T Consensus 3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~--~~~~a~~~~~pwW~-~~GG~lG 79 (150)
T COG3238 3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQG--HPGLAAVASAPWWA-WIGGLLG 79 (150)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcC--CCchhhccCCchHH-HHccchh
Confidence 35677889999999999999999998887679999999999999999988887544 22222222223433 2344332
Q ss_pred hHHHHHHHHHHHhhcCceee-eeccchHHHHHHHHHHHHh----CCcCchHHHHHHHHHHHhhhhhhcc
Q 027773 114 SGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIIL----AEQMYLGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 114 ~~i~~~l~~~al~~~~a~~~-s~~~~l~Pv~~~l~~~lll----~E~~~~~~~lG~~li~~gv~l~~~~ 177 (219)
.+--+.-.....+++++.. .....-|.+.+++++.+=+ ..++++.+++|++++++|+++..++
T Consensus 80 -a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 80 -AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred -hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 3334444566788887554 4455566677777776544 3678999999999999996665543
No 64
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.86 E-value=0.00036 Score=57.70 Aligned_cols=132 Identities=19% Similarity=0.245 Sum_probs=91.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHH-HHHHHHHhcCCccceeeccchhHHHHHh
Q 027773 30 TTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEG-TLAALIMERGKASIWAIHWDTKLVASVY 108 (219)
Q Consensus 30 ~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (219)
+..+...|.++.+++.+.|..|.++.|.. +. +++....-+. +|.++. .++..+... . .+ ....|.. +.
T Consensus 132 ~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~-~~~~~~lPqa-iGm~i~a~i~~~~~~~-~--~~---~k~~~~n-il 200 (269)
T PF06800_consen 132 SKSNMKKGILALLISTIGYWIYSVIPKAF--HV-SGWSAFLPQA-IGMLIGAFIFNLFSKK-P--FF---EKKSWKN-IL 200 (269)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc--CC-ChhHhHHHHH-HHHHHHHHHHhhcccc-c--cc---ccchHHh-hH
Confidence 35666789999999999999999986653 33 4666555554 333333 332222111 1 11 1122333 33
Q ss_pred HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchH----HHHHHHHHHHhhhh
Q 027773 109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLG----RIIGAIIIIGGLYL 173 (219)
Q Consensus 109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~----~~lG~~li~~gv~l 173 (219)
.|+ .-.++..+|..+.++.+.+..-.+..+.++++.+.++++|||+-+.. .++|.++++.|..+
T Consensus 201 ~G~-~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 201 TGL-IWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHH-HHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 444 44777888999999999999999999999999999999999998766 45678888777654
No 65
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=1e-05 Score=66.22 Aligned_cols=152 Identities=11% Similarity=0.032 Sum_probs=114.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCcccee---eccchhHHHHH
Q 027773 32 HNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWA---IHWDTKLVASV 107 (219)
Q Consensus 32 ~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~ 107 (219)
.-...|.++.+.+.++-|+..+..|+...... .-+.++++..+.+.++.++...+.+. -...+. .+....|..+.
T Consensus 181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge-~~~v~~~~~l~a~~Fw~~mt 259 (347)
T KOG1442|consen 181 TLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGE-FQAVVGFPHLPAIKFWILMT 259 (347)
T ss_pred ccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcch-HHHHcCcccchHHHHHHHHH
Confidence 34467999999999999999999987755443 34577888888888888877764332 222222 22225577777
Q ss_pred hHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCCCCC
Q 027773 108 YSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDHKSP 185 (219)
Q Consensus 108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~~~~ 185 (219)
..|+++..++|.. .+=++-.+|..-..-....-..=.+++..+++|..+..-|-+-.+++.|-..+.+.|.++.+++
T Consensus 260 LsglfgF~mgyvT-g~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~ 336 (347)
T KOG1442|consen 260 LSGLFGFAMGYVT-GWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKA 336 (347)
T ss_pred HHHHHHHHhhhee-eEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhh
Confidence 8888776666554 3456778888888888888888899999999999999999999999999999998777665443
No 66
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.85 E-value=0.00023 Score=58.31 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=93.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773 31 THNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS 109 (219)
Q Consensus 31 ~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (219)
..+...|.++.++++++-++..+..++.+|+.+ +.+..+......|.++.++.....++.......+. ..|-...+.
T Consensus 109 ~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f--~G~~~~~~~ 186 (244)
T PF04142_consen 109 NQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFF--HGYSWWVWI 186 (244)
T ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCch--hhcchHHHH
Confidence 455678999999999999999999999999874 33344444455555555554433222111111111 111112233
Q ss_pred HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHH
Q 027773 110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIII 167 (219)
Q Consensus 110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li 167 (219)
.++...++=.+....+|+.+...=.....+..+.+.++++++++.+++....+|+.++
T Consensus 187 ~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 187 VIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 3444455556667788999998888999999999999999999999999999998763
No 67
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.69 E-value=0.00029 Score=49.02 Aligned_cols=57 Identities=21% Similarity=0.429 Sum_probs=35.5
Q ss_pred HhhhHHHHHHHHHHHhhcCceee-eeccchHHHHHHHHHHHHhCCcCchHHHHHHHHH
Q 027773 111 IICSGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIII 167 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~a~~~-s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li 167 (219)
+.+.+++++++.+++++++.+.+ +...-+..+.+.+.+++++||++++.+++|+.+|
T Consensus 36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33568889999999999999887 5556689999999999999999999999999876
No 68
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.61 E-value=0.00065 Score=48.80 Aligned_cols=110 Identities=9% Similarity=0.042 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHH
Q 027773 42 TAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQ 121 (219)
Q Consensus 42 l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~ 121 (219)
++-+++|++.+.+.||..+..+ +..-.. +..-.... ++. +| -++ ..+.....+-.+|
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~~~-~~~~~~-~~~~~~~~-----Ll~------n~--------~y~--ipf~lNq~GSv~f 58 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSGLE-KVKASL-QLLQEIKF-----LLL------NP--------KYI--IPFLLNQSGSVLF 58 (113)
T ss_pred eeehHHhcCchHHHHHHHhhcC-CccchH-HHHHHHHH-----HHH------hH--------HHH--HHHHHHHHHHHHH
Confidence 3457899999999999988764 222221 21111111 111 11 111 1233335567788
Q ss_pred HHHHhhcCceeeeec-cchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhh
Q 027773 122 GIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV 174 (219)
Q Consensus 122 ~~al~~~~a~~~s~~-~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~ 174 (219)
++.+.+.+-+.+.++ +.+.-+++++.++++.+|..+...++|++++++|+.+.
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 899999999999999 59999999999988888888999999999999998764
No 69
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.52 E-value=0.00041 Score=56.89 Aligned_cols=79 Identities=13% Similarity=0.236 Sum_probs=66.4
Q ss_pred hHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773 102 KLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 181 (219)
Q Consensus 102 ~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~ 181 (219)
+.+.+..-++ .-.+...+.+.++++++|+...++..+..+++++++++++|++++..||++..+.++|+.+........
T Consensus 16 ~~~~~~vPA~-lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 16 DTLKLAVPAL-LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 3444444444 346667888899999999999999999999999999999999999999999999999999987655443
No 70
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.14 E-value=0.00022 Score=57.68 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhH
Q 027773 36 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 115 (219)
Q Consensus 36 ~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 115 (219)
.+.+.+++=++.|+.......+... +|...+.-+. ++++...+..+++.. +...+ ..+..-+..|. .=.
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT-~GALifaiiv~~~~~-p~~T~-----~~~iv~~isG~-~Ws 70 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTT-LGALIFAIIVFLFVS-PELTL-----TIFIVGFISGA-FWS 70 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeecCC---ChhHhhhhcc-HHHHHHHHHHheeec-Cccch-----hhHHHHHHhhh-Hhh
Confidence 3568899999999997775544422 3444444333 344444333332322 11111 23333333444 336
Q ss_pred HHHHHHHHHHhhcCceeeeeccc-hHHHHHHHHHHHHhCCcCchHH----HHHHHHHHHhhhhhhccCCC
Q 027773 116 LTYYIQGIVMKDRGPVFVAAFSP-LCMVIVAIMSTIILAEQMYLGR----IIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 116 i~~~l~~~al~~~~a~~~s~~~~-l~Pv~~~l~~~lll~E~~~~~~----~lG~~li~~gv~l~~~~~~~ 180 (219)
+++..++.+++.++.+++.++.. ++-+-+.+++++.|+|..++.+ .++.++++.|+++..++++.
T Consensus 71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~ 140 (288)
T COG4975 71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRN 140 (288)
T ss_pred hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccc
Confidence 77899999999999999999865 6777888999999999999876 45667788999988775543
No 71
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.05 E-value=0.001 Score=54.64 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccc-----hhHHHHHhHHH
Q 027773 37 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWD-----TKLVASVYSGI 111 (219)
Q Consensus 37 G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~g~ 111 (219)
|.+.+++|+++++...+=.|+.- .. |++.+-.+++....+..++..++.+.+....|.+... .....+..+-.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-~g-Dg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~ 78 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-TG-DGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKT 78 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-CC-CcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence 56789999999999999777653 22 5666666666555555544444322211111111000 00001111111
Q ss_pred hhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHH-HhCCcC-----chHHHHHHHHHHHhhhhhhccCCCCC
Q 027773 112 ICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTI-ILAEQM-----YLGRIIGAIIIIGGLYLVVWGKSKDH 182 (219)
Q Consensus 112 ~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~l-ll~E~~-----~~~~~lG~~li~~gv~l~~~~~~~~~ 182 (219)
++.++++.+|. ..+-+.+-..+-+ +||++. .+..++|++++++|..+...-|.+++
T Consensus 79 iGLglg~liW~---------------s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~ 140 (254)
T PF07857_consen 79 IGLGLGMLIWG---------------SVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK 140 (254)
T ss_pred hhhHHHHHHHH---------------HHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence 23344444443 1233333333322 444432 46689999999999988877665553
No 72
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.00049 Score=57.64 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=97.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773 30 TTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS 109 (219)
Q Consensus 30 ~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (219)
...++..|.++++.+.+..+...++.|+..++.. . ...| ... ...... .. .+.|.
T Consensus 15 ~~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~r--------------a~~---gg~~yl--~~--~~Ww~ 69 (335)
T KOG2922|consen 15 MSSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGLR--------------AGE---GGYGYL--KE--PLWWA 69 (335)
T ss_pred hccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hccc--------------ccC---CCcchh--hh--HHHHH
Confidence 3466778999999999999999998888766642 1 0000 000 011111 11 22356
Q ss_pred HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCC
Q 027773 110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH 182 (219)
Q Consensus 110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~ 182 (219)
|.+..++|-.+.+.|....+++.++++..+..++.++++..+++|++++...+|++++++|-.+.....++++
T Consensus 70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~ 142 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ 142 (335)
T ss_pred HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence 7777788889999999999999999999999999999999999999999999999999999988776554443
No 73
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=96.81 E-value=0.0079 Score=49.80 Aligned_cols=149 Identities=19% Similarity=0.171 Sum_probs=101.1
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ceeec-c--chh
Q 027773 28 GTTTHNSIKGALMITAGCFSWSFFIILQAITLKAYP-AELSLTAWICFFGTVEGTLAALIMERGKAS-IWAIH-W--DTK 102 (219)
Q Consensus 28 ~~~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~-~--~~~ 102 (219)
-.+.++...|+++.+.+-+.-|+..+.-.|..++.+ +|.....|.-++|.+++..++..+.-.+.. .+... . -.+
T Consensus 168 ~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD 247 (372)
T KOG3912|consen 168 YTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLED 247 (372)
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhh
Confidence 334567788999999999999999998888877755 789999999999977766655443210100 00000 0 011
Q ss_pred HHH---------HHhHHHhhhHHHHHHHH----HHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Q 027773 103 LVA---------SVYSGIICSGLTYYIQG----IVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIG 169 (219)
Q Consensus 103 ~~~---------l~~~g~~~~~i~~~l~~----~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~ 169 (219)
|.. .++..+.+..++..+++ +--+..++++=.++..+...+-=+++..+..|.++..|++|.++.+.
T Consensus 248 ~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~ 327 (372)
T KOG3912|consen 248 WGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIM 327 (372)
T ss_pred HHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11222223333333332 23356777888888888888888888889999999999999999999
Q ss_pred hhhhhhc
Q 027773 170 GLYLVVW 176 (219)
Q Consensus 170 gv~l~~~ 176 (219)
|+++++.
T Consensus 328 Gi~lY~~ 334 (372)
T KOG3912|consen 328 GIILYNQ 334 (372)
T ss_pred HHHHHHH
Confidence 9999874
No 74
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.81 E-value=0.00071 Score=57.32 Aligned_cols=119 Identities=15% Similarity=0.190 Sum_probs=82.6
Q ss_pred HHHHHHHHHh--hCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHHHHHHHHHHHhhc
Q 027773 51 FIILQAITLK--AYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDR 128 (219)
Q Consensus 51 ~~i~~k~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~~ 128 (219)
.++..|..++ ..+-|...+..+...+.+..+..-.+-.. + ....++...|..++..|++ ..++..+-+.++++.
T Consensus 32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~-~--~~~~~~~~~~~~llpl~~~-~~~~~v~~n~Sl~~v 107 (316)
T KOG1441|consen 32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLV-P--PSKISSKLPLRTLLPLGLV-FCISHVLGNVSLSYV 107 (316)
T ss_pred eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCC-C--CCccccccchHHHHHHHHH-HHHHHHhcchhhhcc
Confidence 4446788888 55566777777666666666554432211 1 1122232456677777774 488889999999999
Q ss_pred CceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhh
Q 027773 129 GPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYL 173 (219)
Q Consensus 129 ~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l 173 (219)
+++.+-+.-.++|++++++++++.+|+.+...++-...++.|+.+
T Consensus 108 ~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~i 152 (316)
T KOG1441|consen 108 PVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAI 152 (316)
T ss_pred chhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEE
Confidence 999999999999999999999999999887644333333333333
No 75
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.72 E-value=0.13 Score=44.36 Aligned_cols=145 Identities=13% Similarity=0.096 Sum_probs=83.6
Q ss_pred CCCcchHHHHHHHHHHHHHHHHH-------HHHHHHH-hhCCchHHHHHHHHH---HHHHHHH-HHHHHHh-cC-Cc---
Q 027773 30 TTHNSIKGALMITAGCFSWSFFI-------ILQAITL-KAYPAELSLTAWICF---FGTVEGT-LAALIME-RG-KA--- 92 (219)
Q Consensus 30 ~~~~~~~G~~~~l~sa~~~a~~~-------i~~k~~~-~~~~~~~~~~~~~~~---~~~v~~~-~~~~~~~-~~-~~--- 92 (219)
++.+...|.+.++++.+.++.|. ...+... ... ++.....-+.. ++.++.- ++..+.. +. ..
T Consensus 168 ~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~-~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~ 246 (345)
T PRK13499 168 EEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGV-DPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLK 246 (345)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccc
Confidence 35677899999999999999999 4333221 122 33333333332 3333222 1111111 10 11
Q ss_pred cceeecc---chhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeee---cc-chHHHHHHHHHHHHhCCcCc------hH
Q 027773 93 SIWAIHW---DTKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAA---FS-PLCMVIVAIMSTIILAEQMY------LG 159 (219)
Q Consensus 93 ~~~~~~~---~~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~---~~-~l~Pv~~~l~~~lll~E~~~------~~ 159 (219)
.....+. ..+...-+..|+ .=.+++.+|..+-++.+...... +. .+..+++.++++ ++||.=+ ..
T Consensus 247 ~~~~~~~~~~~~n~l~~~l~G~-~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~ 324 (345)
T PRK13499 247 ADFSLAKPLLITNVLLSALAGV-MWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRV 324 (345)
T ss_pred hhccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhH
Confidence 0111110 012211123333 33566778888888887665544 44 778899999998 5999977 56
Q ss_pred HHHHHHHHHHhhhhhhcc
Q 027773 160 RIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 160 ~~lG~~li~~gv~l~~~~ 177 (219)
-++|.++++.|..+....
T Consensus 325 l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 325 LSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 799999999998887654
No 76
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.52 E-value=0.16 Score=41.61 Aligned_cols=103 Identities=12% Similarity=-0.041 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhHH
Q 027773 37 GALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSGL 116 (219)
Q Consensus 37 G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i 116 (219)
-+++++.+.++.-...-+.|.+.... .+...+.++..++++++..+.-.+.+ ++. ..+|..++..|+ +.+.
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~v-G~~g~t~lRl~~aaLIll~l~RPwr~----r~~---~~~~~~~~~yGv-sLg~ 83 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLV-GAAGVTALRLAIAALILLALFRPWRR----RLS---KPQRLALLAYGV-SLGG 83 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHcccc-ChhhHHHHHHHHHHHHHHHHhhHHHh----ccC---hhhhHHHHHHHH-HHHH
Confidence 47788888888888888888888887 48889999999999988765432222 221 156777888887 5566
Q ss_pred HHHHHHHHHhhcCceeeeeccchHHHHHHHHH
Q 027773 117 TYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMS 148 (219)
Q Consensus 117 ~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~ 148 (219)
-.+++|.++++++-..+-.+.++.|+...+++
T Consensus 84 MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~ 115 (292)
T COG5006 84 MNLLFYLSIERIPLGIAVAIEFTGPLAVALLS 115 (292)
T ss_pred HHHHHHHHHHhccchhhhhhhhccHHHHHHHh
Confidence 67888899999999999999999998876553
No 77
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.70 E-value=0.93 Score=38.86 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=56.1
Q ss_pred HHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773 118 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 118 ~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~ 177 (219)
..+++.++.+++|+.......+....++++..++++++++..||...++...|+.++...
T Consensus 106 Nnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 106 NNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred hhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 347789999999999999999999999999999999999999999999999999999843
No 78
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=95.61 E-value=0.1 Score=41.19 Aligned_cols=146 Identities=10% Similarity=0.055 Sum_probs=92.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhCC--chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773 32 HNSIKGALMITAGCFSWSFFIILQAITLKAYP--AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS 109 (219)
Q Consensus 32 ~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (219)
.+...|+.+++++++.-++|-+.-|+...... +.--++.-.-+...++....+++..-...++|+-....-|..+...
T Consensus 131 a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~ 210 (290)
T KOG4314|consen 131 ADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGA 210 (290)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhH
Confidence 45578999999999999999999999987654 2111111111122222222221111002233431111235555544
Q ss_pred HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
+.+. ....++.+.++..+.|-..+.-..+..+.-.....++-+-..+.....|..++..|.++....+
T Consensus 211 A~L~-lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 211 AGLS-LAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred HHHH-HHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 4433 2224455678888888888888888888888889877777788889999999999999887543
No 79
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=95.55 E-value=0.0097 Score=46.84 Aligned_cols=61 Identities=21% Similarity=0.378 Sum_probs=57.4
Q ss_pred HHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 118 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 118 ~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
.++|..++++++|+.++.+...+-.+..+++|+.+|+++...+++.+++.+.|+.+..+..
T Consensus 67 NY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 67 NYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred CcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 7889999999999999999999999999999999999999999999999999998877544
No 80
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.01 E-value=0.032 Score=47.94 Aligned_cols=67 Identities=16% Similarity=0.261 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773 115 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 181 (219)
Q Consensus 115 ~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~ 181 (219)
.++.+.++.|+.+.+++-.+++..+.-.|+..++.++.+|++++.+.++..+-+.|++++...+.+.
T Consensus 170 F~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 170 FLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 4567888999999999999999999999999999999999999999999999999999998765443
No 81
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=94.61 E-value=0.44 Score=40.15 Aligned_cols=125 Identities=11% Similarity=0.132 Sum_probs=85.1
Q ss_pred HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ceeeccchhHHHHHhHHHhhhHHHHHHHHHHHhhcCcee
Q 027773 54 LQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKAS-IWAIHWDTKLVASVYSGIICSGLTYYIQGIVMKDRGPVF 132 (219)
Q Consensus 54 ~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~ 132 (219)
..+...+..+=|+-.+..++.+-..+....-...+...+. .-...+....-.+.-.|+ ++++--.+-+|++++.+.+.
T Consensus 34 ~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtal-ata~DIGLSN~sl~yVtlSl 112 (349)
T KOG1443|consen 34 YFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTAL-ATALDIGLSNWSLEYVTLSL 112 (349)
T ss_pred HhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhh-hhhcccccccceeeeeeeee
Confidence 3444445554566667777766555554444333331111 111111111222234444 66777888899999999999
Q ss_pred eeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 133 VAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 133 ~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
.++.-...++|..+++.++-=|+++|.-..-..+|..|+++..++..
T Consensus 113 YTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT 159 (349)
T KOG1443|consen 113 YTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST 159 (349)
T ss_pred eeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc
Confidence 99999999999999999999999999999999999999998876543
No 82
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=0.77 Score=38.81 Aligned_cols=133 Identities=13% Similarity=0.136 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC--chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHH--HHhHHHh
Q 027773 37 GALMITAGCFSWSFFIILQAITLKAYP--AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVA--SVYSGII 112 (219)
Q Consensus 37 G~~~~l~sa~~~a~~~i~~k~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~g~~ 112 (219)
....++.-+++-.+-.+..|.....++ ..+....+|.+...+.....-.. .-...+..+....+.|+- +++.+-
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~-~lv~~~~l~~~~~kk~~P~~~lf~~~- 90 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRL-GLVNFRPLDLRTAKKWFPVSLLFVGM- 90 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHh-ceeecCCcChHHHHHHccHHHHHHHH-
Confidence 344445555555556777788888776 33444558888777776655432 110112222211122221 222221
Q ss_pred hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
.+.-..++++++.....++-...|+++++...+++|-+++...+.....+.+|......
T Consensus 91 -----i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~ 149 (314)
T KOG1444|consen 91 -----LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAF 149 (314)
T ss_pred -----HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcc
Confidence 22234788999999999999999999999999999999999999999999988877654
No 83
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.22 E-value=0.092 Score=42.59 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-CC----------chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHh
Q 027773 40 MITAGCFSWSFFIILQAITLKA-YP----------AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVY 108 (219)
Q Consensus 40 ~~l~sa~~~a~~~i~~k~~~~~-~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (219)
++.+--+|+=.|-+.+.|..|. +. -.+.+.+.+|....+..=++..+... .. ......|.+..
T Consensus 17 ca~GifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~---~~--~D~t~~~~YaA- 90 (337)
T KOG1580|consen 17 CAGGIFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKK---TE--IDNTPTKMYAA- 90 (337)
T ss_pred EecchhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccc---cc--ccCCcchHHHH-
Confidence 3444446777778888877653 32 12355666666666665443332221 11 11112343322
Q ss_pred HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773 109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 181 (219)
Q Consensus 109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~ 181 (219)
..+ +-.+++.--+.|+++.+=-..-+--...|+-.+++++++.+..-+|.++..+.+|+.|+.+..+.+++.
T Consensus 91 cs~-sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv 162 (337)
T KOG1580|consen 91 CSA-SYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV 162 (337)
T ss_pred HHH-HHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc
Confidence 222 445566667889999887777778889999999999999999999999999999999999998765443
No 84
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.52 E-value=0.39 Score=41.08 Aligned_cols=142 Identities=13% Similarity=0.087 Sum_probs=79.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHH-hcCCcc-ceeeccchhHHHHHhHH
Q 027773 33 NSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIM-ERGKAS-IWAIHWDTKLVASVYSG 110 (219)
Q Consensus 33 ~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~g 110 (219)
+-..|+++..+++++-+.+++-.||. |+.. ........-+-+-+..|..... .-++.. .....+...++...+.|
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G 80 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFG 80 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc-CCcc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHH
Confidence 45689999999999999999977776 4442 2222211111111112222111 110111 11111112344444455
Q ss_pred HhhhHHHHHHHHHHHhhcCceee-eeccchHHHHHHHHHHHHhC-------CcCchHHHHHHHHHHHhhhhhhccC
Q 027773 111 IICSGLTYYIQGIVMKDRGPVFV-AAFSPLCMVIVAIMSTIILA-------EQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~a~~~-s~~~~l~Pv~~~l~~~lll~-------E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
++= +++-..|-.++|+++.+.. +...-+.-+++.++--++.+ .+-....++|++++++|+.+.-+.-
T Consensus 81 ~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG 155 (344)
T PF06379_consen 81 VLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAG 155 (344)
T ss_pred HHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHH
Confidence 533 6667888899999998653 33334445555555444433 2334567999999999999987643
No 85
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=92.92 E-value=5.6 Score=36.41 Aligned_cols=41 Identities=5% Similarity=-0.075 Sum_probs=18.3
Q ss_pred eccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773 135 AFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 135 ~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~ 175 (219)
......|+-+.++|.+.-.-.+.....+++++.+++..+..
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666667554332333333333333334444433
No 86
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=92.88 E-value=1.4 Score=36.90 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=59.0
Q ss_pred hhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773 113 CSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 113 ~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~ 177 (219)
+-..+-.+++.++..++++-.-++--...+|+.+++.-+++.+++..+|+|+..+.+|+.++...
T Consensus 95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 55667788889999999999999999999999999999999999999999999999999988654
No 87
>PRK02237 hypothetical protein; Provisional
Probab=92.71 E-value=0.61 Score=33.05 Aligned_cols=45 Identities=16% Similarity=0.167 Sum_probs=36.8
Q ss_pred eeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 134 AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 134 s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
+.+.-...+.++++.+.+-|++|+...++|++++++|+.+..+..
T Consensus 63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 344445567778899999999999999999999999998876544
No 88
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=92.47 E-value=0.082 Score=44.31 Aligned_cols=133 Identities=9% Similarity=0.013 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCc----cceee------ccchhHHHHHhHH
Q 027773 41 ITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKA----SIWAI------HWDTKLVASVYSG 110 (219)
Q Consensus 41 ~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~------~~~~~~~~l~~~g 110 (219)
|+++.+||+.+...+|-.-|+.. ....+.|=+.++.++..++.-++.+... +...+ .....+. ..+.|
T Consensus 1 M~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~-~A~aG 78 (336)
T PF07168_consen 1 MVITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVL-FAMAG 78 (336)
T ss_pred CeeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHH-HHHHh
Confidence 46788999999999998877653 2233455555555554443333322011 11111 1111222 23344
Q ss_pred HhhhHHHHHHHHHHHhhcCceeeeeccc-hHHHHHHHHHHHHhCCcCc--hHHHHHHHHHHHhhhhhhc
Q 027773 111 IICSGLTYYIQGIVMKDRGPVFVAAFSP-LCMVIVAIMSTIILAEQMY--LGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~a~~~s~~~~-l~Pv~~~l~~~lll~E~~~--~~~~lG~~li~~gv~l~~~ 176 (219)
-+..-++..+..+++...|.+.+-++.. +.-++++++-|++ ..+.+ ..-+.|++++++++++...
T Consensus 79 GvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 79 GVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred hHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHHH
Confidence 4455677888888888888877766553 2333344555433 44444 2456688888777776543
No 89
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=92.45 E-value=2.7 Score=35.51 Aligned_cols=138 Identities=12% Similarity=0.014 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-C-------CchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHh
Q 027773 37 GALMITAGCFSWSFFIILQAITLKA-Y-------PAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVY 108 (219)
Q Consensus 37 G~~~~l~sa~~~a~~~i~~k~~~~~-~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 108 (219)
..+++.+=-..+-.+-+++++++++ + .++.-+.+.+-+++.++...+.-. . . .. .....-|+...+
T Consensus 15 L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~--~-k-~~--~~~~apl~~y~~ 88 (327)
T KOG1581|consen 15 LVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKW--W-K-KE--LSGVAPLYKYSL 88 (327)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhc--c-c-cc--CCCCCchhHHhH
Confidence 3333333334444566677666543 2 245566777777777666433321 1 1 11 111123555555
Q ss_pred HHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773 109 SGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 181 (219)
Q Consensus 109 ~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~ 181 (219)
.++ ...++-.+.+.|+++++=-...+--....+-.++++.++.+.+.++..++-+.+|-.|+-+....+...
T Consensus 89 is~-tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 89 ISF-TNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHH-HhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 555 567778888999999998888888888888899999999999999999999999999999988765544
No 90
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.94 E-value=0.37 Score=40.02 Aligned_cols=112 Identities=18% Similarity=0.148 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCccceeecc---c--hhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccc
Q 027773 64 AELSLTAWICFFGTVEGTLAALIMERGKASIWAIHW---D--TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSP 138 (219)
Q Consensus 64 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~--~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~ 138 (219)
.|.-++.++|++...+...+...... .+..+..+. + ...-.+-++. .......+.++++++.+++..-.--.
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k-~~~~ftfp~~~ldl~t~r~vlplsv--Vfi~mI~fnnlcL~yVgVaFYyvgRs 136 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVK-YPGLFTFPSLQLDLATARQVLPLSV--VFILMISFNNLCLKYVGVAFYYVGRS 136 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhh-ccceeccCcccccHHHHHhhcchhh--eeeeehhccceehhhcceEEEEeccc
Confidence 57888999998887776666544322 111111111 0 0111111111 11333456688999999999999999
Q ss_pred hHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 139 LCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 139 l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
+..+|++++.++++|++-+.....++.+|+.|..+-...+
T Consensus 137 LttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE 176 (347)
T KOG1442|consen 137 LTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE 176 (347)
T ss_pred hhhhHHHHhHHhhcccccccccceeehhheehheeccccc
Confidence 9999999999999999999999999999999988776544
No 91
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=91.93 E-value=0.023 Score=46.25 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=88.4
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhH
Q 027773 30 TTHNSIKGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYS 109 (219)
Q Consensus 30 ~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 109 (219)
+.++...|....+.+.+.|-.|.++.+... . +.++...-+. +|.+...+ .+.. ........ ...|. -+..
T Consensus 146 ~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~--v-~g~saiLPqA-iGMv~~al---i~~~-~~~~~~~~-K~t~~-nii~ 215 (288)
T COG4975 146 NPSNLKKGIVILLISTLGYVGYVVLFQLFD--V-DGLSAILPQA-IGMVIGAL---ILGF-FKMEKRFN-KYTWL-NIIP 215 (288)
T ss_pred ChHhhhhheeeeeeeccceeeeEeeecccc--c-cchhhhhHHH-HHHHHHHH---HHhh-cccccchH-HHHHH-HHhh
Confidence 345567899999999999999988665543 2 3343333222 33333222 2221 11111111 12333 3345
Q ss_pred HHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHH----HHHHHHHHHhhhhhh
Q 027773 110 GIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGR----IIGAIIIIGGLYLVV 175 (219)
Q Consensus 110 g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~----~lG~~li~~gv~l~~ 175 (219)
|+ .-+++..++..+.++.+.+..=.+..+..+++.+-+++++||+-+..+ ++|.++++.|..+.-
T Consensus 216 G~-~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 216 GL-IWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HH-HHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 55 337778899999999999999999999999999999999999999776 567777777766554
No 92
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=91.51 E-value=1.4 Score=37.24 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=47.2
Q ss_pred hhHHH-HHHHHHHHhhcCceeeeeccchHHHHH-HHHHHHHhCCcCc--hH----HHHHHHHHHHhhhhhhccCC
Q 027773 113 CSGLT-YYIQGIVMKDRGPVFVAAFSPLCMVIV-AIMSTIILAEQMY--LG----RIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 113 ~~~i~-~~l~~~al~~~~a~~~s~~~~l~Pv~~-~l~~~lll~E~~~--~~----~~lG~~li~~gv~l~~~~~~ 179 (219)
.+.+. ..+.++|+++.+++.+.++.+..-... ++-+.++++|.-+ .. ...|+.+++.|+++....|.
T Consensus 221 ~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL~~~~~ 295 (300)
T PF05653_consen 221 VTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLLSSSKD 295 (300)
T ss_pred HHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhheeeccCc
Confidence 34444 455589999999999998887765554 5556667787643 32 46778888899998875443
No 93
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=90.26 E-value=1.1 Score=31.64 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=36.6
Q ss_pred eccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 135 AFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 135 ~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
...-...+.++++++.+-|++|+...++|+.++++|+.+..+..
T Consensus 62 AYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 62 AYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred HhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 33445567788899999999999999999999999999887644
No 94
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=90.00 E-value=0.74 Score=32.53 Aligned_cols=59 Identities=14% Similarity=0.194 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhcCceeeeecc-chHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773 117 TYYIQGIVMKDRGPVFVAAFS-PLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 117 ~~~l~~~al~~~~a~~~s~~~-~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~ 175 (219)
+-.+|++-+++.+-+.+.++. .+.-+++.+.+..+-.|...-..++|..++++|+.+.+
T Consensus 65 gSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 65 GSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred hHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 356777888999988887764 56788899999887777788889999999999998764
No 95
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=89.87 E-value=0.47 Score=33.42 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=27.6
Q ss_pred HHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773 144 VAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 144 ~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~ 175 (219)
-++++.+++||++++....|.++++.++++..
T Consensus 76 F~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 76 FAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred eHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 35678889999999999999999999887654
No 96
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.58 E-value=1 Score=31.35 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 143 IVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 143 ~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
+-+.++.+.++|++.+..+.|..++..|+++..+
T Consensus 82 iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiFr 115 (116)
T COG3169 82 IFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIFR 115 (116)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhcc
Confidence 3356799999999999999999999999988764
No 97
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=85.91 E-value=0.22 Score=41.37 Aligned_cols=67 Identities=6% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCceeeeeccchHHH----HHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773 115 GLTYYIQGIVMKDRGPVFVAAFSPLCMV----IVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 181 (219)
Q Consensus 115 ~i~~~l~~~al~~~~a~~~s~~~~l~Pv----~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~ 181 (219)
+++.++|.+.+++.+|+.-+++.+.--. +-.++++++-...++...-+=-.+.+.++++..+.+...
T Consensus 119 aL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~L~dL~WL~LFlaiLIWlY~H~~~ 189 (381)
T PF05297_consen 119 ALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTILVDLYWLLLFLAILIWLYVHDQR 189 (381)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4556677788999999887766544322 223334444445555554444456667777766655443
No 98
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=85.19 E-value=3.5 Score=29.04 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=36.6
Q ss_pred eeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 134 AAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 134 s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
+...-...+.++++.++.=|.+|+...++|+++.++|+.+.....
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 444555667788888888899999999999999999988776643
No 99
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=85.15 E-value=0.14 Score=42.00 Aligned_cols=131 Identities=14% Similarity=0.060 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-CCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhh
Q 027773 36 KGALMITAGCFSWSFFIILQAITLKA-YPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICS 114 (219)
Q Consensus 36 ~G~~~~l~sa~~~a~~~i~~k~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 114 (219)
+|.++-++....- .....+.++ .+.|...++.....-++.-.++.++... ... .-|...+..+++-
T Consensus 22 LGQiLSL~~t~~a----~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~----~~~----~~~~hYilla~~D- 88 (336)
T KOG2766|consen 22 LGQILSLLITSTA----FTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK----YIK----AKWRHYILLAFVD- 88 (336)
T ss_pred HHHHHHHHHHcch----hhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH----HHH----HHHHHhhheeEEe-
Confidence 4555555443322 222333344 2234555555554444555554443211 111 2355555565533
Q ss_pred HHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 115 GLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 115 ~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
+=+.++...|.|+.+.+.+.++..-..+...+++|++++-+-.+.++.|+++++.|+.++....-
T Consensus 89 VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV 153 (336)
T KOG2766|consen 89 VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDV 153 (336)
T ss_pred ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeee
Confidence 55566667899999999999999999999999999999999999999999999999998876543
No 100
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=84.84 E-value=25 Score=30.38 Aligned_cols=22 Identities=14% Similarity=-0.106 Sum_probs=9.5
Q ss_pred HHHHHhHHHhhhHHHHHHHHHH
Q 027773 103 LVASVYSGIICSGLTYYIQGIV 124 (219)
Q Consensus 103 ~~~l~~~g~~~~~i~~~l~~~a 124 (219)
++.+...+.+...+++.+....
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~ 83 (385)
T PF03547_consen 62 LWFIPVFAFIIFILGLLLGFLL 83 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3333434444445554444333
No 101
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.19 E-value=9.5 Score=32.52 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=47.6
Q ss_pred HHHHHHHHhhcCceeeeeccchH-HHHHHHHHHHHhCCcCch--H----HHHHHHHHHHhhhhhhccCCCCCC
Q 027773 118 YYIQGIVMKDRGPVFVAAFSPLC-MVIVAIMSTIILAEQMYL--G----RIIGAIIIIGGLYLVVWGKSKDHK 183 (219)
Q Consensus 118 ~~l~~~al~~~~a~~~s~~~~l~-Pv~~~l~~~lll~E~~~~--~----~~lG~~li~~gv~l~~~~~~~~~~ 183 (219)
....+.|++..+++.++++.+.. ..++++.+.++++|.-.. . ...|+..++.|+.+....|..+.+
T Consensus 241 ~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~flL~~~kd~~~~ 313 (335)
T KOG2922|consen 241 MNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFLLHRTKDMEIS 313 (335)
T ss_pred HHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeEeeeecccccc
Confidence 33447999999999888887754 455666678888887543 2 567888899999998766554443
No 102
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=73.01 E-value=14 Score=30.04 Aligned_cols=59 Identities=10% Similarity=0.268 Sum_probs=53.9
Q ss_pred HHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773 122 GIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 122 ~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~ 180 (219)
..++++++....+++-.+..+..+....++||.+++........+++..-++..|...+
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q 144 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQ 144 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhh
Confidence 47899999999999999999999999999999999999999999999999888886543
No 103
>PF15102 TMEM154: TMEM154 protein family
Probab=71.37 E-value=6.4 Score=29.51 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhhhhccCCCCCC
Q 027773 161 IIGAIIIIGGLYLVVWGKSKDHK 183 (219)
Q Consensus 161 ~lG~~li~~gv~l~~~~~~~~~~ 183 (219)
++++++++..++++.+.|+++.+
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 34444455555555554444333
No 104
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=68.30 E-value=34 Score=30.83 Aligned_cols=23 Identities=9% Similarity=0.398 Sum_probs=19.2
Q ss_pred CchHHHHHHHHHHHhhhhhhccC
Q 027773 156 MYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 156 ~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
++..|++.+.++++|+++..+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999988876543
No 105
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=65.11 E-value=13 Score=31.25 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCc-hHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhH
Q 027773 37 GALMITAGCFSWSFFIILQAITLKAYPA-ELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 115 (219)
Q Consensus 37 G~~~~l~sa~~~a~~~i~~k~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 115 (219)
++.+.+++|+.-. +..+.+.+..|+ ..-+++.++++-++-.++.. .+........|. +.+..+..+ ..
T Consensus 7 ai~~vf~GCcsnv---v~lE~L~~~~pgsgNLITFaqFlFia~eGlif~---skf~~~k~kipl-k~Y~i~V~m----FF 75 (330)
T KOG1583|consen 7 AISLVFGGCCSNV---VFLELLVRNEPGSGNLITFAQFLFIATEGLIFT---SKFFTVKPKIPL-KDYAITVAM----FF 75 (330)
T ss_pred HHHHHHHhhhchH---HHHHHHHHhCCCCeeehHHHHHHHHHHhceeee---ccccccCCCCch-hhhheehhe----ee
Confidence 3334444444333 234556666662 33456666665555444322 110001122222 333322211 13
Q ss_pred HHHHHHHHHHhh-cCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCCC
Q 027773 116 LTYYIQGIVMKD-RGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKDH 182 (219)
Q Consensus 116 i~~~l~~~al~~-~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~~ 182 (219)
+...+.+++++. ++...-..+-.-.++..+.++|++.|.+-+..|+...+++-+|+++....+.++-
T Consensus 76 ~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~ 143 (330)
T KOG1583|consen 76 IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDG 143 (330)
T ss_pred eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcch
Confidence 335667788865 7888889999999999999999999999999999999999999999987665443
No 106
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=64.20 E-value=1e+02 Score=27.42 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=7.7
Q ss_pred HHHHHHHHHhhhhhhc
Q 027773 161 IIGAIIIIGGLYLVVW 176 (219)
Q Consensus 161 ~lG~~li~~gv~l~~~ 176 (219)
+.|+.++++++.....
T Consensus 417 ~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 417 LMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHHHHHHHHHHHhe
Confidence 4455555554444433
No 107
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=61.13 E-value=2.9 Score=30.49 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=7.0
Q ss_pred HHHHHHHHHhhhhhhcc
Q 027773 161 IIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 161 ~lG~~li~~gv~l~~~~ 177 (219)
+.|++.+++.++.+++|
T Consensus 74 ~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444433444433
No 108
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=54.63 E-value=1.6e+02 Score=26.38 Aligned_cols=123 Identities=11% Similarity=-0.060 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHhcCCccceeeccchhHHHHHhHHHhhhH
Q 027773 36 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAALIMERGKASIWAIHWDTKLVASVYSGIICSG 115 (219)
Q Consensus 36 ~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 115 (219)
.|.++..+.-+++-+.-++.| .+. +|++.....+......++.+++ .|+ .. ..+.+++....+...
T Consensus 300 YgiLFI~LTF~~fflfE~~~~---~~i-HpiQY~LVGlAl~lFYlLLLSl-SEh-----i~----F~~AYliAa~a~i~L 365 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELLSK---LRI-HPIQYLLVGLALVLFYLLLLSL-SEH-----IG----FNLAYLIAALACIGL 365 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---Ccc-cHHHHHHHHHHHHHHHHHHHHH-Hhh-----hc----hHHHHHHHHHHHHHH
Confidence 366665555444444443322 223 5777766666555555555554 333 21 234443333332323
Q ss_pred HHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhh
Q 027773 116 LTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV 174 (219)
Q Consensus 116 i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~ 174 (219)
..+|..++-+-.-.-..+...+.-+.+.+...+-+.|.-=...-+|..++++.++..
T Consensus 366 --i~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~lLq~EdyALL~GSl~LF~iLa~vM~~ 422 (430)
T PF06123_consen 366 --ISLYLSSVLKSWKRGLIFAGLLAALYGFLYVLLQSEDYALLMGSLLLFIILALVMYL 422 (430)
T ss_pred --HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhe
Confidence 333434443333333333444555556666554333332233333444444433333
No 109
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=52.74 E-value=9.9 Score=28.50 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=16.2
Q ss_pred cCceeeeeccchHHHHHHHHHHHH
Q 027773 128 RGPVFVAAFSPLCMVIVAIMSTII 151 (219)
Q Consensus 128 ~~a~~~s~~~~l~Pv~~~l~~~ll 151 (219)
-+.-+.+.+.|+.|+++++++.++
T Consensus 72 kslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 72 KSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666778888888777665
No 110
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=49.95 E-value=1.7e+02 Score=25.17 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHhhhhhhc
Q 027773 158 LGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 158 ~~~~lG~~li~~gv~l~~~ 176 (219)
....+++++.+.++++..+
T Consensus 370 ~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 370 GFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3356666666666666543
No 111
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=49.75 E-value=2.5e+02 Score=27.11 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHH
Q 027773 46 FSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAA 84 (219)
Q Consensus 46 ~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 84 (219)
+.-....++...+.++.. .-......++.+++..+++.
T Consensus 606 l~~i~G~il~g~L~Dr~G-Rr~~l~~~~~lsai~~ll~~ 643 (742)
T TIGR01299 606 LAVLPGNIVSALLMDKIG-RLRMLAGSMVLSCISCFFLS 643 (742)
T ss_pred HHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHH
Confidence 333334444444455553 33334444444555444433
No 112
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=49.67 E-value=74 Score=27.50 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=13.7
Q ss_pred chHHHHHHHHHHHhhhhhhccCCC
Q 027773 157 YLGRIIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 157 ~~~~~lG~~li~~gv~l~~~~~~~ 180 (219)
.+...+..+++++.+++..+.+++
T Consensus 287 ~~~~ii~g~lll~vl~~~~~~~~~ 310 (344)
T PRK15432 287 WWNDFIAGLVLLGVLVFDGRLRCA 310 (344)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHh
Confidence 355666666666666655544433
No 113
>PRK11715 inner membrane protein; Provisional
Probab=47.40 E-value=2.1e+02 Score=25.67 Aligned_cols=46 Identities=13% Similarity=-0.002 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHH
Q 027773 36 KGALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTVEGTLAAL 85 (219)
Q Consensus 36 ~G~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 85 (219)
.|.++..+.-+++-+.-++.| .+. +|++.....+..+...++.+++
T Consensus 306 YgiLFI~LTF~~fFlfE~~~~---~~i-HpiQYlLVGlAl~lFYLLLLSl 351 (436)
T PRK11715 306 YAILFIALTFAAFFLFELLKK---LRI-HPVQYLLVGLALVLFYLLLLSL 351 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhcC---cee-cHHHHHHHHHHHHHHHHHHHHH
Confidence 366666555444444443222 223 5777777666666666666554
No 114
>PRK11010 ampG muropeptide transporter; Validated
Probab=47.14 E-value=2.1e+02 Score=25.61 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=22.6
Q ss_pred hhcCceeeeeccchHHHHHHHH----HHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773 126 KDRGPVFVAAFSPLCMVIVAIM----STIILAEQMYLGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 126 ~~~~a~~~s~~~~l~Pv~~~l~----~~lll~E~~~~~~~lG~~li~~gv~l~~~~ 177 (219)
++.+++..+.++...-+...+. +++.-.-.......+..++.+.|+++..+.
T Consensus 347 ~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 347 KSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555443332322 322211112333455556666666555443
No 115
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=47.07 E-value=1.5e+02 Score=26.72 Aligned_cols=46 Identities=15% Similarity=0.112 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHhCC-cCchHHHHHHHHHHHhhhhhhccCCCCCCCC
Q 027773 139 LCMVIVAIMSTIILAE-QMYLGRIIGAIIIIGGLYLVVWGKSKDHKSP 185 (219)
Q Consensus 139 l~Pv~~~l~~~lll~E-~~~~~~~lG~~li~~gv~l~~~~~~~~~~~~ 185 (219)
+.|+++.+ +++..+- .-...-.-|++.++.|+++..+.|.+++...
T Consensus 168 l~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~G 214 (448)
T COG2271 168 LAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEG 214 (448)
T ss_pred hHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccC
Confidence 44555544 5554432 2233356677778889888887777665543
No 116
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=47.01 E-value=30 Score=18.51 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHHHhhhhhh
Q 027773 156 MYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 156 ~~~~~~lG~~li~~gv~l~~ 175 (219)
-.+..++|++++..+.++..
T Consensus 10 ~~~~~~~G~~l~~~~~~~~~ 29 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGLLLR 29 (34)
T ss_pred cHHHHHHHHHHHHHHHHHhe
Confidence 34556777755555444443
No 117
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=43.56 E-value=1.9e+02 Score=23.91 Aligned_cols=17 Identities=0% Similarity=-0.015 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhC
Q 027773 46 FSWSFFIILQAITLKAY 62 (219)
Q Consensus 46 ~~~a~~~i~~k~~~~~~ 62 (219)
+...+..+...++.++.
T Consensus 41 ~~~~~~~~~~g~l~dr~ 57 (379)
T TIGR00881 41 IAYGISKFVMGSVSDRS 57 (379)
T ss_pred HHHHhhhhhhhHHHHhh
Confidence 33334444445555555
No 118
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=43.47 E-value=2.1e+02 Score=24.37 Aligned_cols=33 Identities=12% Similarity=-0.094 Sum_probs=14.7
Q ss_pred HHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 144 VAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 144 ~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
..+.+++.-.-..+...++++++.++++.+...
T Consensus 355 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 355 GPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444432222344445555555555554443
No 119
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=42.17 E-value=2.5e+02 Score=24.90 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=25.1
Q ss_pred HHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773 145 AIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 181 (219)
Q Consensus 145 ~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~ 181 (219)
.+-+.++-+-......+.|+++.+.+..+.....+++
T Consensus 353 ~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~ 389 (394)
T COG2814 353 ALGGLVLDALGYAATGWVGAALLLLALLLALLSARKD 389 (394)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444455566778999999999988887655443
No 120
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=41.73 E-value=13 Score=27.28 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=21.9
Q ss_pred eeeccchHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHhhhhhhc
Q 027773 133 VAAFSPLCMVIVAIMSTIIL---AEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 133 ~s~~~~l~Pv~~~l~~~lll---~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
.+++.|+-|++.++++.++. .+. ++...++.++.+...++..+
T Consensus 70 aa~l~Y~lPll~li~g~~l~~~~~~~-e~~~~l~~l~~l~~~~~~~~ 115 (135)
T PF04246_consen 70 AAFLVYLLPLLALIAGAVLGSYLGGS-ELWAILGGLLGLALGFLILR 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 33445566777766665443 111 55555555555544444433
No 121
>PF11295 DUF3096: Protein of unknown function (DUF3096); InterPro: IPR021446 This entry is represented by the archaeal Thermoproteus tenax spherical virus 1, Orf18. The characteristics of the protein distribution suggest prophage matches and lateral genetic transfer in addition to the phage matches.
Probab=41.49 E-value=29 Score=19.81 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhh
Q 027773 141 MVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLV 174 (219)
Q Consensus 141 Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~ 174 (219)
|+.+.+.+++++--+=-....+|.-+++.|+.-.
T Consensus 1 pi~aliaGiLiLi~PrllnyiVaiyLI~~G~lgL 34 (39)
T PF11295_consen 1 PILALIAGILILIMPRLLNYIVAIYLIVIGLLGL 34 (39)
T ss_pred CHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5667777777776666666778888888887643
No 122
>PRK10489 enterobactin exporter EntS; Provisional
Probab=39.81 E-value=2.4e+02 Score=24.19 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhhhhhc
Q 027773 160 RIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 160 ~~lG~~li~~gv~l~~~ 176 (219)
...|++..++++++...
T Consensus 382 ~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 382 SASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555555555555444
No 123
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=39.72 E-value=1.6e+02 Score=22.09 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=37.9
Q ss_pred HHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773 120 IQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSKD 181 (219)
Q Consensus 120 l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~~ 181 (219)
+..+-+++.+..+.++-. +.-...+++++--.+++.++.|+.+++.=++++...+...
T Consensus 64 ~~~~lm~~kgi~rm~lG~----~vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPEpg~ 121 (144)
T PF01350_consen 64 VFWFLMRRKGIGRMSLGM----LVMAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPEPGK 121 (144)
T ss_pred HHHhhhcCCCcchhhHHH----HHHHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccCCCC
Confidence 333456666777665433 3344455666667788889999999988777776654433
No 124
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=36.96 E-value=82 Score=23.09 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=7.5
Q ss_pred HHHHHHHHHHhhhhh
Q 027773 160 RIIGAIIIIGGLYLV 174 (219)
Q Consensus 160 ~~lG~~li~~gv~l~ 174 (219)
.+.|..+++.|++..
T Consensus 89 ~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 89 IIIGLLLFLVGVIYI 103 (136)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 125
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=36.67 E-value=3.1e+02 Score=24.46 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=25.0
Q ss_pred eccchHHHHHHHHHHHH-hCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 135 AFSPLCMVIVAIMSTII-LAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 135 ~~~~l~Pv~~~l~~~ll-l~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
.....-|+++.++..++ +.... .....|.+++.+|+.++.+.++
T Consensus 393 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~ 437 (473)
T TIGR00905 393 RKALIVGVIACVYSIWLLYAAGL-KYLLLGFILYAPGIIFYGRARK 437 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556665554443 33322 3456688888888877665443
No 126
>PF07123 PsbW: Photosystem II reaction centre W protein (PsbW); InterPro: IPR009806 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbW found in PSII, where it is a subunit of the oxygen-evolving complex. PsbW appears to have several roles, including guiding PSII biogenesis and assembly, stabilising dimeric PSII [], and facilitating PSII repair after photo-inhibition []. There appears to be two classes of PsbW, class 1 being found predominantly in algae and cyanobacteria, and class 2 being found predominantly in plants. This entry represents class 2 PsbW.; GO: 0015979 photosynthesis, 0009507 chloroplast, 0009523 photosystem II
Probab=34.40 E-value=23 Score=26.20 Aligned_cols=30 Identities=13% Similarity=0.349 Sum_probs=22.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027773 31 THNSIKGALMITAGCFSWSFFIILQAITLK 60 (219)
Q Consensus 31 ~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~ 60 (219)
-++..+|.+++-+=.+.|++|++..|.+-+
T Consensus 101 lsn~~LgwIL~gVf~lIWslY~~~~~~l~e 130 (138)
T PF07123_consen 101 LSNNLLGWILLGVFGLIWSLYFVYTSTLDE 130 (138)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhccccCC
Confidence 466677888888888888888887776543
No 127
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=34.35 E-value=31 Score=26.16 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=17.6
Q ss_pred eccchHHHHHHHHHHHHhCCc---CchHHHHHHHHHHHhhhhhh
Q 027773 135 AFSPLCMVIVAIMSTIILAEQ---MYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 135 ~~~~l~Pv~~~l~~~lll~E~---~~~~~~lG~~li~~gv~l~~ 175 (219)
++.|+-|+++++.+.++. +. -++..++++++.+...++..
T Consensus 79 ~lvYllPLl~li~ga~l~-~~~~~~e~~~~~~~~~g~~~g~~~~ 121 (154)
T PRK10862 79 LLVYMTPLVGLFLGAALF-QLLFGSDLAALCGALLGGVGGFLLA 121 (154)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhcchHHHHHHHHHHHHHHHHHH
Confidence 334455666655543332 11 14445555444443333333
No 128
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=33.54 E-value=1.7e+02 Score=23.19 Aligned_cols=12 Identities=8% Similarity=-0.067 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 027773 46 FSWSFFIILQAI 57 (219)
Q Consensus 46 ~~~a~~~i~~k~ 57 (219)
+.-++...+++.
T Consensus 110 Llsgitaff~~n 121 (226)
T COG4858 110 LLSGITAFFQKN 121 (226)
T ss_pred HHHHHHHHHhcC
Confidence 334444444433
No 129
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=33.23 E-value=70 Score=20.65 Aligned_cols=18 Identities=28% Similarity=0.067 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhhhhcc
Q 027773 160 RIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 160 ~~lG~~li~~gv~l~~~~ 177 (219)
.++++.+++.|++++...
T Consensus 6 iLi~ICVaii~lIlY~iY 23 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356667777777776543
No 130
>PRK10054 putative transporter; Provisional
Probab=33.16 E-value=3.2e+02 Score=23.51 Aligned_cols=35 Identities=14% Similarity=0.110 Sum_probs=15.2
Q ss_pred chHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhh
Q 027773 138 PLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLY 172 (219)
Q Consensus 138 ~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~ 172 (219)
.+...++..++-++..-..+...++.+++.+.+++
T Consensus 142 ~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i 176 (395)
T PRK10054 142 NIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLV 176 (395)
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 33444444444444433344444444444444433
No 131
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=33.01 E-value=4e+02 Score=24.71 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHH
Q 027773 38 ALMITAGCFSWSFFIILQAITLKAYPAELSLTAWICFFGTV 78 (219)
Q Consensus 38 ~~~~l~sa~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~v 78 (219)
.++.++++++.-.+.+..| ..++.|.+.......+++|.+
T Consensus 12 ~~~~l~~~~~~~~~~~~~~-~~~~lP~s~llil~GlllG~i 51 (559)
T TIGR00840 12 ILWILLASLAKIGFHLTHK-VIRAVPESVLLIVYGLLVGGI 51 (559)
T ss_pred HHHHHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHHHHHH
Confidence 4555666666666555444 446677666666666656543
No 132
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=32.54 E-value=19 Score=28.52 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=28.4
Q ss_pred ccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 136 FSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 136 ~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
+....+++.++.++.+.+++.+..+++..+++..|++...+
T Consensus 10 ~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~l 50 (222)
T TIGR00803 10 FKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASL 50 (222)
T ss_pred HHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHh
Confidence 34556777777777777777777777777777777765444
No 133
>TIGR00893 2A0114 d-galactonate transporter.
Probab=31.56 E-value=3e+02 Score=22.69 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=4.7
Q ss_pred HHHHHHHHhhC
Q 027773 52 IILQAITLKAY 62 (219)
Q Consensus 52 ~i~~k~~~~~~ 62 (219)
.....++.++.
T Consensus 46 ~~~~g~l~d~~ 56 (399)
T TIGR00893 46 QFPGGWLLDRF 56 (399)
T ss_pred HHhHHHHHHhc
Confidence 33344444444
No 134
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=30.68 E-value=4e+02 Score=23.88 Aligned_cols=59 Identities=12% Similarity=0.017 Sum_probs=35.7
Q ss_pred HhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 107 VYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 107 ~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
+=.+++.....|.+| .|+..-|..+-.+. -.-.+..-++..++|.++.++.+.-...+.
T Consensus 247 Lqssvv~~Y~~yL~~-SAlss~P~~~CNp~------------~~~~~~~~~~~~iig~i~~~~~v~yss~ra 305 (429)
T PF03348_consen 247 LQSSVVSLYTTYLTW-SALSSEPDKECNPS------------GSRSGSWNTWQSIIGLIFTFVSVLYSSFRA 305 (429)
T ss_pred ccHHHHHHHHHHHHH-HHHHcCCCcccCCc------------ccccCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 345555555556665 67776665554444 001234466778999999888876665543
No 135
>PF15471 TMEM171: Transmembrane protein family 171
Probab=30.66 E-value=1e+02 Score=25.76 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhhhccC
Q 027773 159 GRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 159 ~~~lG~~li~~gv~l~~~~~ 178 (219)
.|++|-++++.|+-+....+
T Consensus 162 lQImGPlIVl~GLCFFVVAH 181 (319)
T PF15471_consen 162 LQIMGPLIVLVGLCFFVVAH 181 (319)
T ss_pred hhhhhhHHHHHhhhhhheee
Confidence 48999999999987766543
No 136
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=30.48 E-value=42 Score=22.76 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=21.2
Q ss_pred cCchHHHHHHHHHHHhhhhhhccCCCC
Q 027773 155 QMYLGRIIGAIIIIGGLYLVVWGKSKD 181 (219)
Q Consensus 155 ~~~~~~~lG~~li~~gv~l~~~~~~~~ 181 (219)
..++..++|+.+++.|+.++..+..++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 467889999999999998887655443
No 137
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=29.31 E-value=1.1e+02 Score=24.53 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=40.2
Q ss_pred hHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 108 YSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
++|+++|+.+..--+.++. .+-. +.+-.....+.-++.+ ..+|.++.+-+++++++.++
T Consensus 131 ~lGL~GTV~GIm~aF~~i~-~~~~-~~~a~vA~GIseAL~a-----------TA~GL~vAIPAvi~yn~l~r 189 (216)
T COG0811 131 FLGLLGTVWGIMPAFIGIG-AGGG-ADLAVVAPGISEALIA-----------TAIGLFVAIPAVVAYNVLRR 189 (216)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccCC-CCHHHHHhhHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 7889999998887777777 2222 3333334445555555 78888888888888886554
No 138
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=28.71 E-value=4.1e+02 Score=23.39 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=19.8
Q ss_pred HHhHHHhhhHHHHHHHHHHHhhcC-ceeeeeccchHHHHHHHHHHHHhC
Q 027773 106 SVYSGIICSGLTYYIQGIVMKDRG-PVFVAAFSPLCMVIVAIMSTIILA 153 (219)
Q Consensus 106 l~~~g~~~~~i~~~l~~~al~~~~-a~~~s~~~~l~Pv~~~l~~~lll~ 153 (219)
+.-.+.+...+.|.+...+.-|.. +..-.......+.++.++..+.+.
T Consensus 354 l~~~~~~~~l~~y~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (435)
T PRK10435 354 LTGIAVLLTMLPYFYSCVDLIRFEGVNIRNFVSLICSVLGCVFCFIALM 402 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555444432222 221122223444555555544443
No 139
>PF01618 MotA_ExbB: MotA/TolQ/ExbB proton channel family MotA family only; InterPro: IPR002898 This family groups together integral membrane proteins that appear to be involved in translocation of proteins across a membrane. These proteins are probably proton channels. MotA is an essential component of the flagellar motor that uses a proton gradient to generate rotational motion in the flagellar []. ExbB is part of the TonB-dependent transduction complex. The TonB complex uses the proton gradient across the inner bacterial membrane to transport large molecules across the outer bacterial membrane.; GO: 0008565 protein transporter activity, 0006810 transport, 0016020 membrane
Probab=28.11 E-value=1.4e+02 Score=21.85 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=33.8
Q ss_pred HhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 107 VYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 107 ~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
-..|+++|+++...-+.++...+. ..+-....-+..++.. ...|.++.+.+..+.++.+
T Consensus 66 P~lGLlGTv~Gmi~~f~~l~~~~~--~~~~~l~~gi~~Al~t-----------T~~GL~vai~~~~~~~~l~ 124 (139)
T PF01618_consen 66 PLLGLLGTVIGMIEAFQALAETGS--GDPSQLAGGISVALIT-----------TAYGLVVAIPALPFYNYLK 124 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccC--CCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
Confidence 467888888888888777776554 1111222222222222 6667776666666555433
No 140
>PF15345 TMEM51: Transmembrane protein 51
Probab=27.63 E-value=44 Score=27.13 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhhhhccCCCCCC
Q 027773 162 IGAIIIIGGLYLVVWGKSKDHK 183 (219)
Q Consensus 162 lG~~li~~gv~l~~~~~~~~~~ 183 (219)
.|+++.++.+.+.++.|++.++
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq 88 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQ 88 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4777788888888876665443
No 141
>PF14851 FAM176: FAM176 family
Probab=27.46 E-value=2.1e+02 Score=21.68 Aligned_cols=15 Identities=13% Similarity=0.044 Sum_probs=6.1
Q ss_pred HHHhhcCceeeeecc
Q 027773 123 IVMKDRGPVFVAAFS 137 (219)
Q Consensus 123 ~al~~~~a~~~s~~~ 137 (219)
|+.-+-.|.+++++.
T Consensus 12 ya~I~~~PE~~aLYF 26 (153)
T PF14851_consen 12 YAHIRDNPERFALYF 26 (153)
T ss_pred HHHHHhChHHHHHHH
Confidence 333333444444443
No 142
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=27.13 E-value=2.3e+02 Score=25.84 Aligned_cols=7 Identities=14% Similarity=-0.282 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 027773 51 FIILQAI 57 (219)
Q Consensus 51 ~~i~~k~ 57 (219)
...+..|
T Consensus 329 ag~lsdr 335 (495)
T KOG2533|consen 329 AGYLSDR 335 (495)
T ss_pred HHHHHHH
Confidence 3333444
No 143
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=26.90 E-value=54 Score=18.89 Aligned_cols=16 Identities=44% Similarity=0.937 Sum_probs=8.4
Q ss_pred HHHHHHHhhhhhhccC
Q 027773 163 GAIIIIGGLYLVVWGK 178 (219)
Q Consensus 163 G~~li~~gv~l~~~~~ 178 (219)
|.++++.+++++.+++
T Consensus 22 ~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYR 37 (40)
T ss_pred HHHHHHHHHHhheEEe
Confidence 4455555556554443
No 144
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=25.66 E-value=2.8e+02 Score=20.53 Aligned_cols=49 Identities=16% Similarity=0.118 Sum_probs=32.3
Q ss_pred hhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHh
Q 027773 101 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIIL 152 (219)
Q Consensus 101 ~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll 152 (219)
..+.......+++...-|..-.+..||.++++.+... -..+.+.+.+++
T Consensus 31 ~~l~~~~~l~~l~~~~d~~~~~~~ak~~G~s~~~~~g---a~iG~IvG~f~~ 79 (140)
T PF04306_consen 31 WFLAILAVLALLGEVLDYLAGAYGAKRFGASRWGIWG---AIIGGIVGFFVL 79 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHHHHHh
Confidence 3455555566667778888888888998888887763 234444444443
No 145
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=25.31 E-value=1.4e+02 Score=16.79 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027773 37 GALMITAGCFSWSFFIILQ 55 (219)
Q Consensus 37 G~~~~l~sa~~~a~~~i~~ 55 (219)
=.++-++.+..|++|++..
T Consensus 7 iVl~Pil~A~~Wa~fNIg~ 25 (36)
T CHL00196 7 VIAAPVLAAASWALFNIGR 25 (36)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 4567788999999999854
No 146
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=25.16 E-value=3.4e+02 Score=21.33 Aligned_cols=34 Identities=3% Similarity=0.234 Sum_probs=23.5
Q ss_pred HHHHHHHhCCcCchHHHHHHHHHH--HhhhhhhccC
Q 027773 145 AIMSTIILAEQMYLGRIIGAIIII--GGLYLVVWGK 178 (219)
Q Consensus 145 ~l~~~lll~E~~~~~~~lG~~li~--~gv~l~~~~~ 178 (219)
-.+|..++.+..-+....|..+.+ .|.+...+++
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~~~ 168 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLARRE 168 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455778888888888888887754 5655555443
No 147
>PRK12650 putative monovalent cation/H+ antiporter subunit A; Reviewed
Probab=25.15 E-value=7.1e+02 Score=24.99 Aligned_cols=14 Identities=14% Similarity=0.005 Sum_probs=9.1
Q ss_pred chHHHHHHHHHHHH
Q 027773 34 SIKGALMITAGCFS 47 (219)
Q Consensus 34 ~~~G~~~~l~sa~~ 47 (219)
+++|.+..+..+..
T Consensus 740 DTlgEi~Vl~~A~~ 753 (962)
T PRK12650 740 DTLGELSVLGMAGV 753 (962)
T ss_pred chhhHHHHHHHHHH
Confidence 57888877655444
No 148
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=25.11 E-value=1.5e+02 Score=19.22 Aligned_cols=12 Identities=42% Similarity=0.365 Sum_probs=5.8
Q ss_pred HHHHHHHHHhhh
Q 027773 161 IIGAIIIIGGLY 172 (219)
Q Consensus 161 ~lG~~li~~gv~ 172 (219)
++|+.+++..++
T Consensus 9 i~Gm~iVF~~L~ 20 (79)
T PF04277_consen 9 IIGMGIVFLVLI 20 (79)
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 149
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=25.03 E-value=5.2e+02 Score=23.42 Aligned_cols=17 Identities=12% Similarity=0.225 Sum_probs=8.9
Q ss_pred chHHHHHHHHHHHHHHH
Q 027773 64 AELSLTAWICFFGTVEG 80 (219)
Q Consensus 64 ~~~~~~~~~~~~~~v~~ 80 (219)
.|......+.++..++.
T Consensus 330 ~P~~a~~~~~~i~~l~~ 346 (507)
T TIGR00910 330 VPVPLVIIQGIITSIAG 346 (507)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 35555555555554433
No 150
>PRK10655 potE putrescine transporter; Provisional
Probab=24.93 E-value=4.7e+02 Score=22.89 Aligned_cols=38 Identities=18% Similarity=0.102 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 139 LCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 139 l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
.-|+.+.+.....+-..+......|..+++.|+.++..
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 426 (438)
T PRK10655 389 FIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGL 426 (438)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444333222222345677777788777643
No 151
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=24.67 E-value=52 Score=20.97 Aligned_cols=31 Identities=6% Similarity=0.230 Sum_probs=24.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027773 30 TTHNSIKGALMITAGCFSWSFFIILQAITLK 60 (219)
Q Consensus 30 ~~~~~~~G~~~~l~sa~~~a~~~i~~k~~~~ 60 (219)
+-++..+|.+++-+-.+.|++|.+..+.+-+
T Consensus 28 Gls~~~LgwIL~gvf~liw~ly~~~~~~l~~ 58 (67)
T PLN00082 28 GVSNGKLTWILVGVTALIWALYFSYSSTLPE 58 (67)
T ss_pred cccCchhhhHHHHHHHHHHHHHhheecccCC
Confidence 3467788999999999999999997665533
No 152
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=23.42 E-value=5.1e+02 Score=22.77 Aligned_cols=18 Identities=6% Similarity=-0.049 Sum_probs=11.4
Q ss_pred eccchHHHHHHHHHHHHh
Q 027773 135 AFSPLCMVIVAIMSTIIL 152 (219)
Q Consensus 135 ~~~~l~Pv~~~l~~~lll 152 (219)
......|+++++...+++
T Consensus 385 p~~~~~~~~~~~~~~~~~ 402 (445)
T PRK10644 385 PAYLAVTLIAFVYCIWAV 402 (445)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 455567777777765554
No 153
>PRK11469 hypothetical protein; Provisional
Probab=23.19 E-value=49 Score=25.96 Aligned_cols=38 Identities=13% Similarity=0.082 Sum_probs=23.5
Q ss_pred chHHHHHHHHHHHHhCCcCchHHHHHHHHH-HHhhhhhh
Q 027773 138 PLCMVIVAIMSTIILAEQMYLGRIIGAIII-IGGLYLVV 175 (219)
Q Consensus 138 ~l~Pv~~~l~~~lll~E~~~~~~~lG~~li-~~gv~l~~ 175 (219)
.+.|..+...+-.+-+-......|+|..+. ..|..+..
T Consensus 48 ~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi~ 86 (188)
T PRK11469 48 TLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666665554444445577877664 47888776
No 154
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.69 E-value=1.6e+02 Score=20.13 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=33.9
Q ss_pred hhHHHHHhHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhc
Q 027773 101 TKLVASVYSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 101 ~~~~~l~~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~ 176 (219)
..|+.-+..|++..++.+...+|-.... .....+-=.|+-.+|..++++|.++..+
T Consensus 30 p~W~~p~m~~lmllGL~WiVvyYi~~~~--------------------i~pi~~lG~WN~~IGfg~~~~Gf~mt~r 85 (87)
T PF06781_consen 30 PRWYAPLMLGLMLLGLLWIVVYYISGGQ--------------------IPPIPDLGNWNLAIGFGLMIVGFLMTMR 85 (87)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhcccCC--------------------CCCcccccchHHHHHHHHHHHHHHHHcc
Confidence 4566667777776666666655443322 0000111157788999999999988653
No 155
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=22.66 E-value=66 Score=23.47 Aligned_cols=23 Identities=9% Similarity=0.200 Sum_probs=10.7
Q ss_pred CCcCchHH----HHHHHHHHHhhhhhh
Q 027773 153 AEQMYLGR----IIGAIIIIGGLYLVV 175 (219)
Q Consensus 153 ~E~~~~~~----~lG~~li~~gv~l~~ 175 (219)
.|..+++. .+.++++++|+++..
T Consensus 29 ~ED~tpWNysiL~Ls~vvlvi~~~LLg 55 (125)
T PF15048_consen 29 VEDATPWNYSILALSFVVLVISFFLLG 55 (125)
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 45555442 233444445555543
No 156
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=22.42 E-value=5e+02 Score=22.25 Aligned_cols=38 Identities=11% Similarity=0.274 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCcCchH-HHHHHHHHHHhhhhhhccCCCCC
Q 027773 144 VAIMSTIILAEQMYLG-RIIGAIIIIGGLYLVVWGKSKDH 182 (219)
Q Consensus 144 ~~l~~~lll~E~~~~~-~~lG~~li~~gv~l~~~~~~~~~ 182 (219)
.++.+ .+..-.+++. ...++.+++...+...|+.++++
T Consensus 347 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK11195 347 LGLYS-LLVKLGVPVVAVIVGFGLLVALAMALLWRWHRRN 385 (393)
T ss_pred HHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444 3334444444 45566666666666666555443
No 157
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=22.33 E-value=84 Score=26.09 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=18.7
Q ss_pred CchHHHHHHHHHHHhhhhhhccC
Q 027773 156 MYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 156 ~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
++..|+++..+++.|+.+..+++
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999988765433
No 158
>PRK09579 multidrug efflux protein; Reviewed
Probab=22.30 E-value=2.2e+02 Score=28.55 Aligned_cols=32 Identities=16% Similarity=0.161 Sum_probs=23.0
Q ss_pred HHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773 143 IVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 143 ~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~ 175 (219)
.+++++.++.+.+++....+|+ ++++|+.+-+
T Consensus 883 ~G~~~~L~i~~~~l~~~s~~G~-i~L~GivVnn 914 (1017)
T PRK09579 883 CGALIPLFLGVSSMNIYTQVGL-VTLIGLISKH 914 (1017)
T ss_pred HHHHHHHHHhCCCccHHHHHHH-HHHHHHHHcC
Confidence 4566666778999999999884 4556766543
No 159
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=22.30 E-value=2.2e+02 Score=18.04 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=14.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Q 027773 34 SIKGALMITAGCFSWSFFIILQAIT 58 (219)
Q Consensus 34 ~~~G~~~~l~sa~~~a~~~i~~k~~ 58 (219)
...+.++++++.+|+.+++......
T Consensus 4 ~~l~~~~~llg~~~l~i~~~~~syV 28 (63)
T PF13127_consen 4 YILSLILLLLGVVCLFIFNIIGSYV 28 (63)
T ss_pred hHHHHHHHHHHHHHHHHHhcccceE
Confidence 3456666666666666666654444
No 160
>PHA03049 IMV membrane protein; Provisional
Probab=22.13 E-value=1.4e+02 Score=19.22 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhhhhhc
Q 027773 160 RIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 160 ~~lG~~li~~gv~l~~~ 176 (219)
.++++.+++.|++++-.
T Consensus 6 ~l~iICVaIi~lIvYgi 22 (68)
T PHA03049 6 ILVIICVVIIGLIVYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666677776543
No 161
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=21.98 E-value=2.8e+02 Score=19.18 Aligned_cols=55 Identities=15% Similarity=0.063 Sum_probs=27.6
Q ss_pred HHHHhhcCceeeeeccchHHHHHHHHHHHH--h-CCc-CchHHHHHHHHHHHhhhhhhc
Q 027773 122 GIVMKDRGPVFVAAFSPLCMVIVAIMSTII--L-AEQ-MYLGRIIGAIIIIGGLYLVVW 176 (219)
Q Consensus 122 ~~al~~~~a~~~s~~~~l~Pv~~~l~~~ll--l-~E~-~~~~~~lG~~li~~gv~l~~~ 176 (219)
..++++++....-.+-.+..+.+++++.+. + ++. +-...|.|.+.-+++.-+...
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~ 80 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQ 80 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHH
Confidence 566666654343444444444455554332 2 322 223347787776666655443
No 162
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=21.73 E-value=6.8e+02 Score=23.56 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=17.6
Q ss_pred CCcCchHHHHHHHHHHHhhhhhhccCC
Q 027773 153 AEQMYLGRIIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 153 ~E~~~~~~~lG~~li~~gv~l~~~~~~ 179 (219)
.....+...+|..+++.|+.+......
T Consensus 502 ~~~~~~~~~~~~~~~~~g~~~~~~~~~ 528 (646)
T PRK05771 502 VVGLGPLGLIGKYLIIGGVVLIILGEG 528 (646)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455667787888888777765443
No 163
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.66 E-value=4e+02 Score=20.90 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=14.7
Q ss_pred HHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHh
Q 027773 118 YYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIIL 152 (219)
Q Consensus 118 ~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll 152 (219)
+...+...+.+++..- + .+.|...+++|.+.+
T Consensus 160 w~~~~~~~~~lp~~in-p--~l~~~~~iiig~i~~ 191 (206)
T PF06570_consen 160 WIVIFVLTSFLPPVIN-P--VLPPWVYIIIGVIAF 191 (206)
T ss_pred HHHHHHHHHHccccCC-c--CCCHHHHHHHHHHHH
Confidence 3333344444655422 2 244555555555544
No 164
>PRK09577 multidrug efflux protein; Reviewed
Probab=21.39 E-value=2.3e+02 Score=28.40 Aligned_cols=32 Identities=19% Similarity=0.069 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhh
Q 027773 143 IVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVV 175 (219)
Q Consensus 143 ~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~ 175 (219)
.+.+++.+++|.+++...++|++ +++|+.+-+
T Consensus 904 ~G~~~~l~l~g~~l~~~s~~G~i-~L~GivVnn 935 (1032)
T PRK09577 904 IGAVLGVTLRGMPNDIYFKVGLI-ATIGLSAKN 935 (1032)
T ss_pred HHHHHHHHHhCCCccHHHHHHHH-HHHHHHHcC
Confidence 35677778889999999999987 677776644
No 165
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=20.71 E-value=1.8e+02 Score=16.36 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027773 37 GALMITAGCFSWSFFIILQAI 57 (219)
Q Consensus 37 G~~~~l~sa~~~a~~~i~~k~ 57 (219)
=.+.-++.+..|++|++..-.
T Consensus 7 iVl~Pil~A~gWa~fNIg~~A 27 (36)
T PF06298_consen 7 IVLLPILPAAGWALFNIGRAA 27 (36)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 356677889999999985443
No 166
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.70 E-value=2.1e+02 Score=21.94 Aligned_cols=11 Identities=18% Similarity=0.096 Sum_probs=5.4
Q ss_pred CCCCcceeeee
Q 027773 207 KENFGHEVTKI 217 (219)
Q Consensus 207 ~~~~~~~~~~~ 217 (219)
.|.+|+.+.+.
T Consensus 148 dedeD~TvFd~ 158 (163)
T PF06679_consen 148 DEDEDSTVFDA 158 (163)
T ss_pred ccccccceeee
Confidence 33455555554
No 167
>COG1971 Predicted membrane protein [Function unknown]
Probab=20.62 E-value=93 Score=24.52 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHHHhCCcCchHHHHHHHH-HHHhhhhhhc
Q 027773 138 PLCMVIVAIMSTIILAEQMYLGRIIGAII-IIGGLYLVVW 176 (219)
Q Consensus 138 ~l~Pv~~~l~~~lll~E~~~~~~~lG~~l-i~~gv~l~~~ 176 (219)
.+.|+++...+.++=.-.-.+..|+|.++ ++.|+.+..-
T Consensus 48 ~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e 87 (190)
T COG1971 48 AIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMIIE 87 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566776666655544445668777766 5588887653
No 168
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=20.51 E-value=4.6e+02 Score=21.08 Aligned_cols=19 Identities=32% Similarity=0.489 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhhhhcc
Q 027773 159 GRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 159 ~~~lG~~li~~gv~l~~~~ 177 (219)
...+|+.+++.|+++....
T Consensus 176 ~N~~gl~~~~fg~~V~~~~ 194 (214)
T cd08764 176 GNFIGIVLVIFGGLVVYLV 194 (214)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4688999999888876543
No 169
>PRK10801 colicin uptake protein TolQ; Provisional
Probab=20.49 E-value=2.1e+02 Score=23.13 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=41.4
Q ss_pred hHHHhhhHHHHHHHHHHHhhcCceeeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773 108 YSGIICSGLTYYIQGIVMKDRGPVFVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~~~ 180 (219)
++|+++|+.|..--+..+...+. ..+-.....+..+++. ...|.++.+-+++.+++-.++
T Consensus 136 ~lGLlGTV~Gmi~aF~~i~~~g~--~~~~~~a~GI~~ALit-----------Ta~GL~vAIPAli~yN~f~~r 195 (227)
T PRK10801 136 YIGLFGTVWGIMHAFIALGAVKQ--ATLQMVAPGIAEALIA-----------TAIGLFAAIPAVMAYNRLNQR 195 (227)
T ss_pred HHHHHHHHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 67888999988887777765442 2333444555566666 778888888888888765443
No 170
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=20.40 E-value=3.9e+02 Score=23.81 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCC
Q 027773 40 MITAGCFSWSFFIILQAITLKAYP 63 (219)
Q Consensus 40 ~~l~sa~~~a~~~i~~k~~~~~~~ 63 (219)
+.+.+.+.--+..+..-+..++.+
T Consensus 50 ~~~~~~v~~l~~~~~~~~~~~~i~ 73 (437)
T TIGR00939 50 YTLASQLPSLLFNSLNLFLIFRIP 73 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 333444443344444444445553
No 171
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=20.37 E-value=4.4e+02 Score=23.46 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=20.8
Q ss_pred eeeeccchHHHHHHHHHHHHhCCcCchHHHHHHHHHH
Q 027773 132 FVAAFSPLCMVIVAIMSTIILAEQMYLGRIIGAIIII 168 (219)
Q Consensus 132 ~~s~~~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~ 168 (219)
++=+...+.=+.+..++=.+++..++...|++.+..+
T Consensus 142 ~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~ 178 (412)
T PF01306_consen 142 RARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAI 178 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHH
Confidence 3344444444555555555566667777777665433
No 172
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=20.15 E-value=1.8e+02 Score=17.59 Aligned_cols=13 Identities=23% Similarity=0.049 Sum_probs=6.7
Q ss_pred HHHhhhhhhccCC
Q 027773 167 IIGGLYLVVWGKS 179 (219)
Q Consensus 167 i~~gv~l~~~~~~ 179 (219)
++.|+.+....|+
T Consensus 14 ~lLg~~I~~~~K~ 26 (50)
T PF12606_consen 14 GLLGLSICTTLKA 26 (50)
T ss_pred HHHHHHHHHHhhc
Confidence 4455555555444
No 173
>COG4956 Integral membrane protein (PIN domain superfamily) [General function prediction only]
Probab=20.14 E-value=5.7e+02 Score=22.05 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=12.5
Q ss_pred HhhhHHHHHHHHHHHhhcC
Q 027773 111 IICSGLTYYIQGIVMKDRG 129 (219)
Q Consensus 111 ~~~~~i~~~l~~~al~~~~ 129 (219)
++...++|+.+..+.++..
T Consensus 117 i~t~il~y~G~~~~~k~~d 135 (356)
T COG4956 117 ILTIILAYFGFQLADKKRD 135 (356)
T ss_pred HHHHHHHHHhhHHhhhhhH
Confidence 3345677777777777654
Done!