Query 027773
Match_columns 219
No_of_seqs 147 out of 1667
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 01:40:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.3 3.4E-12 1.2E-16 94.2 5.2 71 108-178 34-105 (137)
2 3b5d_A Multidrug transporter E 99.0 7.1E-09 2.4E-13 73.6 10.9 70 108-177 34-104 (110)
3 2l2t_A Receptor tyrosine-prote 46.6 21 0.00073 20.2 3.0 14 165-178 24-37 (44)
4 3l1l_A Arginine/agmatine antip 45.0 83 0.0028 26.1 8.0 44 136-180 386-430 (445)
5 4aps_A DI-OR tripeptide H+ sym 43.9 1.4E+02 0.0047 24.8 13.2 13 49-61 68-80 (491)
6 2ks1_B Epidermal growth factor 40.1 28 0.00095 19.7 2.8 12 166-177 26-37 (44)
7 2zxe_G FXYD10, phospholemman-l 32.2 30 0.001 21.8 2.2 19 161-179 25-43 (74)
8 4aps_A DI-OR tripeptide H+ sym 29.3 2.4E+02 0.0082 23.2 10.7 13 120-132 407-419 (491)
9 3rko_J NADH-quinone oxidoreduc 28.9 1.8E+02 0.0062 21.7 12.2 35 145-179 127-163 (184)
10 2i68_A Protein EMRE; transmemb 17.3 2.7E+02 0.0093 19.4 7.0 19 39-57 5-23 (137)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.27 E-value=3.4e-12 Score=94.20 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=55.0
Q ss_pred hHHHhhhHHHHHHHHHHHhhcCceeeeec-cchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhccC
Q 027773 108 YSGIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWGK 178 (219)
Q Consensus 108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~-~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~~ 178 (219)
..++++++++|++|.+++++++++++.++ ..+.|+++++++++++||++++.+++|+++|++|+++..+.+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 46677889999999999999999999998 899999999999999999999999999999999999987644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.97 E-value=7.1e-09 Score=73.60 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=64.5
Q ss_pred hHHHhhhHHHHHHHHHHHhhcCceeeeec-cchHHHHHHHHHHHHhCCcCchHHHHHHHHHHHhhhhhhcc
Q 027773 108 YSGIICSGLTYYIQGIVMKDRGPVFVAAF-SPLCMVIVAIMSTIILAEQMYLGRIIGAIIIIGGLYLVVWG 177 (219)
Q Consensus 108 ~~g~~~~~i~~~l~~~al~~~~a~~~s~~-~~l~Pv~~~l~~~lll~E~~~~~~~lG~~li~~gv~l~~~~ 177 (219)
..++++.++++.++.+++++++.+.+.++ ..+.|+++++++++++||++++.+++|+++|++|+++....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 35566778999999999999999999888 89999999999999999999999999999999999998754
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=46.58 E-value=21 Score=20.16 Aligned_cols=14 Identities=21% Similarity=0.114 Sum_probs=5.6
Q ss_pred HHHHHhhhhhhccC
Q 027773 165 IIIIGGLYLVVWGK 178 (219)
Q Consensus 165 ~li~~gv~l~~~~~ 178 (219)
+++..+.+++.+++
T Consensus 24 ~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 24 VIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhh
Confidence 33333444444433
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=45.03 E-value=83 Score=26.10 Aligned_cols=44 Identities=2% Similarity=-0.105 Sum_probs=23.7
Q ss_pred ccchHHHHHHHHHHHHh-CCcCchHHHHHHHHHHHhhhhhhccCCC
Q 027773 136 FSPLCMVIVAIMSTIIL-AEQMYLGRIIGAIIIIGGLYLVVWGKSK 180 (219)
Q Consensus 136 ~~~l~Pv~~~l~~~lll-~E~~~~~~~lG~~li~~gv~l~~~~~~~ 180 (219)
....-++++.+...+.+ ... ......|.++++.|+.++...+++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSG-AKEVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHHST
T ss_pred hhHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555544443 222 233456777777888777654443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=43.86 E-value=1.4e+02 Score=24.77 Aligned_cols=13 Identities=0% Similarity=-0.146 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhh
Q 027773 49 SFFIILQAITLKA 61 (219)
Q Consensus 49 a~~~i~~k~~~~~ 61 (219)
.+..+...++.++
T Consensus 68 ~~~~~~~g~l~dr 80 (491)
T 4aps_A 68 YLSGTIGGFVADR 80 (491)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 3344444445555
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=40.15 E-value=28 Score=19.65 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=4.8
Q ss_pred HHHHhhhhhhcc
Q 027773 166 IIIGGLYLVVWG 177 (219)
Q Consensus 166 li~~gv~l~~~~ 177 (219)
++..+.+++.++
T Consensus 26 ii~~~~~~~~RR 37 (44)
T 2ks1_B 26 VVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHhhh
Confidence 333333444433
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=32.17 E-value=30 Score=21.83 Aligned_cols=19 Identities=26% Similarity=0.611 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhhhhhccCC
Q 027773 161 IIGAIIIIGGLYLVVWGKS 179 (219)
Q Consensus 161 ~lG~~li~~gv~l~~~~~~ 179 (219)
++++++.+.|+++...+|=
T Consensus 25 ifA~vLfi~GI~iilS~kc 43 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKC 43 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC-
T ss_pred hhHHHHHHHHHHHHHcCcc
Confidence 4556666777777765543
No 8
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=29.33 E-value=2.4e+02 Score=23.23 Aligned_cols=13 Identities=15% Similarity=0.010 Sum_probs=6.5
Q ss_pred HHHHHHhhcCcee
Q 027773 120 IQGIVMKDRGPVF 132 (219)
Q Consensus 120 l~~~al~~~~a~~ 132 (219)
.+.+..+..+...
T Consensus 407 ~~~~~~~~~p~~~ 419 (491)
T 4aps_A 407 GLSVTTKLAPKAF 419 (491)
T ss_dssp HHHHHHHHTTTTC
T ss_pred HHHHHHHhCCHHH
Confidence 3445555555543
No 9
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=28.89 E-value=1.8e+02 Score=21.66 Aligned_cols=35 Identities=3% Similarity=0.037 Sum_probs=26.3
Q ss_pred HHHHHHHhCCcCchHHHHHHHHHH--HhhhhhhccCC
Q 027773 145 AIMSTIILAEQMYLGRIIGAIIII--GGLYLVVWGKS 179 (219)
Q Consensus 145 ~l~~~lll~E~~~~~~~lG~~li~--~gv~l~~~~~~ 179 (219)
--+|..++++.+-+....++.+.+ .|.+...++++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~~ 163 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREER 163 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467888999999999999988754 56666655443
No 10
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=17.31 E-value=2.7e+02 Score=19.42 Aligned_cols=19 Identities=5% Similarity=0.006 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027773 39 LMITAGCFSWSFFIILQAI 57 (219)
Q Consensus 39 ~~~l~sa~~~a~~~i~~k~ 57 (219)
++.++++++-+.+.+..|+
T Consensus 5 l~Ll~ail~ev~~~~~lK~ 23 (137)
T 2i68_A 5 IYLGGAILAEVIGTTLMKF 23 (137)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444
Done!