Query 027773
Match_columns 219
No_of_seqs 147 out of 1667
Neff 8.8
Searched_HMMs 13730
Date Tue Mar 26 01:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027773.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027773hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 76.2 14 0.001 28.2 13.7 14 49-62 73-86 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 56.4 36 0.0026 25.6 9.5 25 108-132 352-376 (447)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 16.1 55 0.004 14.7 2.9 17 36-52 3-19 (27)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 9.4 1.2E+02 0.0087 14.7 3.1 19 34-52 17-35 (37)
5 d1pv7a_ f.38.1.2 (A:) Lactose 8.4 3.2E+02 0.023 19.0 12.7 11 120-130 333-343 (417)
6 d1iwga8 f.35.1.1 (A:513-566,A: 6.2 4E+02 0.029 18.1 9.7 26 143-168 96-121 (222)
7 d1iwga7 f.35.1.1 (A:7-37,A:331 4.2 4.4E+02 0.032 17.4 4.0 21 148-168 83-103 (199)
8 d1uptb_ a.193.1.1 (B:) Golgi a 3.4 2E+02 0.015 15.6 1.1 22 145-166 11-32 (58)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 3.1 3.9E+02 0.029 15.3 2.5 9 167-175 31-39 (91)
10 d2hthb1 b.55.1.12 (B:3-131) Va 2.6 3.3E+02 0.024 17.0 1.7 14 3-16 22-35 (129)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=76.15 E-value=14 Score=28.17 Aligned_cols=14 Identities=7% Similarity=0.000 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhhC
Q 027773 49 SFFIILQAITLKAY 62 (219)
Q Consensus 49 a~~~i~~k~~~~~~ 62 (219)
++..+...++.+++
T Consensus 73 ~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 73 GFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc
Confidence 34444445555555
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=56.42 E-value=36 Score=25.65 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=11.3
Q ss_pred hHHHhhhHHHHHHHHHHHhhcCcee
Q 027773 108 YSGIICSGLTYYIQGIVMKDRGPVF 132 (219)
Q Consensus 108 ~~g~~~~~i~~~l~~~al~~~~a~~ 132 (219)
..|..........+.......+...
T Consensus 352 ~~g~~~~~~~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 352 VIGFLIYGPVMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3333333333444455555555543
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.09 E-value=55 Score=14.68 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027773 36 KGALMITAGCFSWSFFI 52 (219)
Q Consensus 36 ~G~~~~l~sa~~~a~~~ 52 (219)
+|.+..-++.++++.|-
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57777777777777763
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.36 E-value=1.2e+02 Score=14.73 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 027773 34 SIKGALMITAGCFSWSFFI 52 (219)
Q Consensus 34 ~~~G~~~~l~sa~~~a~~~ 52 (219)
.-+|.++.+.-++.++.|.
T Consensus 17 Ly~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 17 LYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3479998888888888775
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=8.40 E-value=3.2e+02 Score=18.98 Aligned_cols=11 Identities=0% Similarity=-0.233 Sum_probs=5.1
Q ss_pred HHHHHHhhcCc
Q 027773 120 IQGIVMKDRGP 130 (219)
Q Consensus 120 l~~~al~~~~a 130 (219)
.+.+..+..++
T Consensus 333 ~~~~~~~~~~~ 343 (417)
T d1pv7a_ 333 CFKYITSQFEV 343 (417)
T ss_dssp HHHHHHHHSCG
T ss_pred HHHHHHHHCCH
Confidence 33444455554
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=6.19 E-value=4e+02 Score=18.06 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCcCchHHHHHHHHHH
Q 027773 143 IVAIMSTIILAEQMYLGRIIGAIIII 168 (219)
Q Consensus 143 ~~~l~~~lll~E~~~~~~~lG~~li~ 168 (219)
.+.+++..+++.+++....+|.++.+
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~ 121 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTI 121 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchh
Confidence 44556666789999998888877644
No 7
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=4.15 E-value=4.4e+02 Score=17.44 Aligned_cols=21 Identities=10% Similarity=0.138 Sum_probs=13.6
Q ss_pred HHHHhCCcCchHHHHHHHHHH
Q 027773 148 STIILAEQMYLGRIIGAIIII 168 (219)
Q Consensus 148 ~~lll~E~~~~~~~lG~~li~ 168 (219)
...+++.+++.....+..+.+
T Consensus 83 ~m~~~g~~l~~~s~~~~~i~i 103 (199)
T d1iwga7 83 VLAAFGFSINTLTMFGMVLAI 103 (199)
T ss_dssp HHHTTTCCSCHHHHHHHHHHH
T ss_pred HhhcCCCchHHHHHHHHHHHH
Confidence 344668888877766665544
No 8
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.39 E-value=2e+02 Score=15.61 Aligned_cols=22 Identities=9% Similarity=0.329 Sum_probs=14.4
Q ss_pred HHHHHHHhCCcCchHHHHHHHH
Q 027773 145 AIMSTIILAEQMYLGRIIGAII 166 (219)
Q Consensus 145 ~l~~~lll~E~~~~~~~lG~~l 166 (219)
+++-+...+|..++..++++++
T Consensus 11 vLfeYMmG~E~~tlaKVi~av~ 32 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITTVL 32 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHHHT
T ss_pred HHHHHHcCcchhHHHHHHHHHH
Confidence 4556666677777777766543
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.09 E-value=3.9e+02 Score=15.35 Aligned_cols=9 Identities=0% Similarity=-0.481 Sum_probs=3.8
Q ss_pred HHHhhhhhh
Q 027773 167 IIGGLYLVV 175 (219)
Q Consensus 167 i~~gv~l~~ 175 (219)
++.|++++.
T Consensus 31 ~V~~~~~~~ 39 (91)
T d1fftb2 31 PAILMAVGF 39 (91)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 334444443
No 10
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.61 E-value=3.3e+02 Score=16.97 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=0.0
Q ss_pred eeeeeCCccccccC
Q 027773 3 MTLIKGPILELFWT 16 (219)
Q Consensus 3 ~~~~~~~~~~~~~~ 16 (219)
|.||+|+..+.+.+
T Consensus 22 V~lydG~~k~~~~~ 35 (129)
T d2hthb1 22 VRIYDGEEKIKFDA 35 (129)
T ss_dssp EEEEETTCSSCCCC
T ss_pred EEeecCCCcccccc
Done!