Query 027774
Match_columns 219
No_of_seqs 135 out of 1279
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 14:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 5.8E-59 1.3E-63 388.9 20.6 205 2-219 20-226 (321)
2 KOG0819 Annexin [Intracellular 100.0 1.3E-43 2.8E-48 296.6 16.8 196 2-219 92-301 (321)
3 PF00191 Annexin: Annexin; In 99.7 4.6E-18 1E-22 113.6 7.4 66 82-147 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 1.1E-16 2.3E-21 107.0 7.3 64 2-75 1-66 (66)
5 smart00335 ANX Annexin repeats 99.5 5.3E-14 1.1E-18 89.8 5.6 53 95-147 1-53 (53)
6 smart00335 ANX Annexin repeats 99.3 2.7E-12 5.9E-17 81.8 5.8 51 15-75 1-53 (53)
7 COG5126 FRQ1 Ca2+-binding prot 57.6 46 0.00099 26.0 6.3 70 25-106 11-82 (160)
8 COG5118 BDP1 Transcription ini 53.4 14 0.00029 32.9 2.9 34 2-35 371-404 (507)
9 PF14003 YlbE: YlbE-like prote 51.3 32 0.0007 22.6 3.8 45 104-148 16-61 (65)
10 KOG0031 Myosin regulatory ligh 47.4 1.4E+02 0.0029 23.4 7.7 135 23-194 21-165 (171)
11 COG5118 BDP1 Transcription ini 45.8 50 0.0011 29.5 5.2 83 50-135 329-424 (507)
12 PF13720 Acetyltransf_11: Udp 40.9 43 0.00093 22.9 3.4 21 107-127 27-47 (83)
13 PF06757 Ins_allergen_rp: Inse 38.9 1.6E+02 0.0036 23.0 7.0 72 19-104 105-178 (179)
14 COG3750 Uncharacterized protei 38.4 52 0.0011 22.4 3.3 43 2-44 35-83 (85)
15 smart00717 SANT SANT SWI3, AD 37.8 78 0.0017 17.9 4.4 34 2-35 7-41 (49)
16 PF00249 Myb_DNA-binding: Myb- 36.9 92 0.002 18.4 4.9 34 2-35 7-42 (48)
17 PF12645 HTH_16: Helix-turn-he 35.6 95 0.0021 20.2 4.3 26 5-33 2-27 (65)
18 cd00167 SANT 'SWI3, ADA2, N-Co 35.1 84 0.0018 17.4 4.4 34 2-35 5-39 (45)
19 KOG0859 Synaptobrevin/VAMP-lik 31.6 2.2E+02 0.0048 23.1 6.4 67 108-175 75-142 (217)
20 PF13921 Myb_DNA-bind_6: Myb-l 28.5 78 0.0017 19.6 2.9 34 2-35 4-37 (60)
21 PF13758 Prefoldin_3: Prefoldi 28.4 1.4E+02 0.0031 21.3 4.4 34 3-36 34-72 (99)
22 PF01706 FliG_C: FliG C-termin 27.2 2.3E+02 0.005 20.1 7.1 35 4-40 42-76 (110)
23 PHA02613 48 baseplate subunit; 25.3 45 0.00097 28.9 1.6 106 15-123 115-226 (361)
24 PF13766 ECH_C: 2-enoyl-CoA Hy 25.2 2.2E+02 0.0049 20.7 5.2 48 101-148 36-91 (118)
25 PF12174 RST: RCD1-SRO-TAF4 (R 24.5 2E+02 0.0043 19.1 4.4 45 18-66 11-56 (70)
26 TIGR03031 cas_csx12 CRISPR-ass 24.1 1.9E+02 0.0042 27.6 5.5 77 16-107 237-319 (802)
27 PRK10236 hypothetical protein; 22.3 4.6E+02 0.01 21.8 7.1 35 115-150 65-99 (237)
28 PF12652 CotJB: CotJB protein; 21.1 2.8E+02 0.006 18.8 5.7 42 67-126 14-55 (78)
29 PF10073 DUF2312: Uncharacteri 20.2 2.4E+02 0.0053 19.0 4.1 39 2-40 25-68 (74)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-59 Score=388.87 Aligned_cols=205 Identities=38% Similarity=0.571 Sum_probs=201.0
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHh-hhccCchHHhhhchhHHHHHHHhhhc-cHHHHHHHhhcCC
Q 027774 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLWAMHP 79 (219)
Q Consensus 2 ~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y-~~~~~~~~~~~~~~~~L~~~l~~~~s-~~~~~l~~~~~~p 79 (219)
+||+.|++||+|+||||++||+||++|||+||+.|+.+| ..||++ |.++|++++| +|++++++|+.+|
T Consensus 20 ~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkD----------Li~~Lk~ELsG~Fe~~i~al~~~p 89 (321)
T KOG0819|consen 20 QDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKD----------LIKDLKSELSGDFERAIVALMKPP 89 (321)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHH----------HHHHHHHHhCccHHHHHHHHcCCH
Confidence 799999999999999999999999999999999999999 999998 9999999999 9999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHhhhCccHHHHHhhcccccHHHHHHHHHhhhhccCCCCC
Q 027774 80 WERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVALVSAYRYEGPKVK 159 (219)
Q Consensus 80 ~~~dA~~L~~A~~g~gtd~~~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~ll~~~r~e~~~v~ 159 (219)
+++||..|++||+|.|||+.+||||+|+|||.|+++|+++|+..|+++|++||.+++||+|+++|+.|+++.|+|+..||
T Consensus 90 ~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~~~R~e~~~vd 169 (321)
T KOG0819|consen 90 AEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQGNRDEGDRVD 169 (321)
T ss_pred HHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHhcCCccCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhccccCCCCChhhHHHHhhcCCHHHHHHHHHHHHHHhCCchhhhC
Q 027774 160 EDVAKSEAKALISAVKNAEKQNPIENDEVVRILSTRSKPHLKSVFKHYKEIAGQHFEDVC 219 (219)
Q Consensus 160 ~~~~~~da~~L~~A~~~~~~~~~~d~~~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~I 219 (219)
+..+..||+.|++|++.+ +++|++.|+.||++||.+||++++.+|++.+|++|+++|
T Consensus 170 ~~la~~dA~~L~~Age~k---~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I 226 (321)
T KOG0819|consen 170 DALAKQDAQDLYEAGEKK---WGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSI 226 (321)
T ss_pred HHHHHHHHHHHHHHhhhh---ccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 999999999999999985 568999999999999999999999999999999999876
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-43 Score=296.61 Aligned_cols=196 Identities=23% Similarity=0.307 Sum_probs=187.4
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHh-hhccCchHHhhhchhHHHHHHHhhhc-cHHHHHHHhhcC-
Q 027774 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLWAMH- 78 (219)
Q Consensus 2 ~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y-~~~~~~~~~~~~~~~~L~~~l~~~~s-~~~~~l~~~~~~- 78 (219)
.||..|++||+|+|||+.+||+|||+|||.|+++|+++| ..|+++ |+++|.+++| +|+++|+.++.+
T Consensus 92 ~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~s----------LEeDI~s~TSG~frklLv~L~~~~ 161 (321)
T KOG0819|consen 92 YDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKS----------LEEDIASDTSGDFRKLLVSLVQGN 161 (321)
T ss_pred hHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHccc----------HHHHhhhccCchHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999 999999 9999999999 999999999865
Q ss_pred ----------ChHHHHHHHHHHhhc-CCCcHHHHHHHhccCCHHHHHHHHHHHHhhhCccHHHHHhhcccccHHHHHHHH
Q 027774 79 ----------PWERDARLIKEALKK-GPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVAL 147 (219)
Q Consensus 79 ----------p~~~dA~~L~~A~~g-~gtd~~~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~l 147 (219)
.+..||+.|++|... +|||+..++.||++||..|++++++.|+..+|+++++.|+.+++|+|+++|+++
T Consensus 162 R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~llai 241 (321)
T KOG0819|consen 162 RDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLLAI 241 (321)
T ss_pred CccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHHHH
Confidence 278899999999654 789999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCCChhHHHHHHHHHHHhhhccccCCCCChhhHHHHhhcCCHHHHHHHHHHHHHHhCCchhhhC
Q 027774 148 VSAYRYEGPKVKEDVAKSEAKALISAVKNAEKQNPIENDEVVRILSTRSKPHLKSVFKHYKEIAGQHFEDVC 219 (219)
Q Consensus 148 l~~~r~e~~~v~~~~~~~da~~L~~A~~~~~~~~~~d~~~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~I 219 (219)
+.|.| +++.++|+.||.||+|. |||+.++|||+++||+.+|..|+.+|+++||++|.++|
T Consensus 242 v~c~~--------n~~~yFA~~L~~amkg~----GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I 301 (321)
T KOG0819|consen 242 VKCIR--------NPPAYFAERLRKAMKGL----GTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAI 301 (321)
T ss_pred HHHHc--------CHHHHHHHHHHHHHhcc----CCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHH
Confidence 99988 68999999999999986 48999999999999999999999999999999999876
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.75 E-value=4.6e-18 Score=113.63 Aligned_cols=66 Identities=36% Similarity=0.537 Sum_probs=63.2
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHhhhCccHHHHHhhcccccHHHHHHHH
Q 027774 82 RDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVAL 147 (219)
Q Consensus 82 ~dA~~L~~A~~g~gtd~~~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~l 147 (219)
+||+.|++|++|+|+|+..+++||++||+.|++.|+++|+..||++|+++|++++||+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999999999999876
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.68 E-value=1.1e-16 Score=106.99 Aligned_cols=64 Identities=25% Similarity=0.364 Sum_probs=61.2
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHh-hhccCchHHhhhchhHHHHHHHhhhc-cHHHHHHHh
Q 027774 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLW 75 (219)
Q Consensus 2 ~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y-~~~~~~~~~~~~~~~~L~~~l~~~~s-~~~~~l~~~ 75 (219)
+||+.|++|++|+|+|+..|++||++||+.|++.|.++| ..||++ |.++|++++| +|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~----------L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKD----------LEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-----------HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHH----------HHHHHHHhCCHHHHHHHHhC
Confidence 599999999999999999999999999999999999999 999999 9999999999 999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.49 E-value=5.3e-14 Score=89.82 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=51.1
Q ss_pred CCcHHHHHHHhccCCHHHHHHHHHHHHhhhCccHHHHHhhcccccHHHHHHHH
Q 027774 95 PNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVAL 147 (219)
Q Consensus 95 gtd~~~li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~l 147 (219)
|||+..|++|+|+|++.|+++|+++|+..||++|.++|++++||+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999999999988864
No 6
>smart00335 ANX Annexin repeats.
Probab=99.33 E-value=2.7e-12 Score=81.83 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=49.0
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHh-hhccCchHHhhhchhHHHHHHHhhhc-cHHHHHHHh
Q 027774 15 GVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLW 75 (219)
Q Consensus 15 gtde~~li~il~~rs~~q~~~i~~~Y-~~~~~~~~~~~~~~~~L~~~l~~~~s-~~~~~l~~~ 75 (219)
|||+..|++|+++||+.||+.|+.+| ..||++ |.++|++++| +|+++|++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~----------L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKD----------LEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc----------HHHHHHHhcChHHHHHHHhC
Confidence 69999999999999999999999999 999999 9999999999 999998865
No 7
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=57.58 E-value=46 Score=25.97 Aligned_cols=70 Identities=13% Similarity=0.180 Sum_probs=44.7
Q ss_pred hcCCCHHHHHHHHHHhhhccCchHHhhhchhHHHHHHHhhhccHHHHHHHhhcCChHHHHHHHHHHhhc--CCCcHHHHH
Q 027774 25 LGNSQPEHRQAFRKEGGFFAEDERRFERWNDHHVKLLKHEFMRFKNAVVLWAMHPWERDARLIKEALKK--GPNSNSVIV 102 (219)
Q Consensus 25 l~~rs~~q~~~i~~~Y~~~~~~~~~~~~~~~~L~~~l~~~~s~~~~~l~~~~~~p~~~dA~~L~~A~~g--~gtd~~~li 102 (219)
-+..+..|++.++++|+++.++ =...|-.. .+.+++-.+=.+|+...+..|-+.+.. ...+...++
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d----------~~G~I~~~--el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl 78 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRD----------SDGLIDRN--ELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFL 78 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcC----------CCCCCcHH--HHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHH
Confidence 3556999999999999555543 01111100 466666555567888899999988875 335666655
Q ss_pred HHhc
Q 027774 103 EIAS 106 (219)
Q Consensus 103 ~il~ 106 (219)
.++.
T Consensus 79 ~~ms 82 (160)
T COG5126 79 TVMS 82 (160)
T ss_pred HHHH
Confidence 5553
No 8
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=53.42 E-value=14 Score=32.86 Aligned_cols=34 Identities=32% Similarity=0.368 Sum_probs=28.3
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHH
Q 027774 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQA 35 (219)
Q Consensus 2 ~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~ 35 (219)
.|.+..|+|+.-||||-..|-....+|+..|+.+
T Consensus 371 ~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKa 404 (507)
T COG5118 371 KEIEKFYKALSIWGTDFSLISSLFPNRERKQIKA 404 (507)
T ss_pred HHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHH
Confidence 4788999999999999999888888887665544
No 9
>PF14003 YlbE: YlbE-like protein
Probab=51.32 E-value=32 Score=22.57 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=33.4
Q ss_pred HhccCCHHHHHHHHHHHHhhhCccHHHHHhhcccc-cHHHHHHHHH
Q 027774 104 IASTRSSDELLGARKAYHSLFEHSIEEDVASHIHG-KEKKLLVALV 148 (219)
Q Consensus 104 il~~rs~~~l~~I~~~Y~~~yg~~L~~~i~~~~sg-~~~~~l~~ll 148 (219)
...+|.|.++...-.++..-|++++-+.|..-..+ ..-.+++.+.
T Consensus 16 R~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~~M~ 61 (65)
T PF14003_consen 16 RILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMMEMF 61 (65)
T ss_pred HHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHHHHH
Confidence 44599999999999999999999999988765433 2333444433
No 10
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=47.37 E-value=1.4e+02 Score=23.40 Aligned_cols=135 Identities=10% Similarity=0.156 Sum_probs=64.6
Q ss_pred HHhcCCCHHHHHHHHHHhhhccCchHHhhhchhHHHHHHHhhhccHHHHHHHhhcCChHHHHHHHHHHhhcCCCcHHHH-
Q 027774 23 SILGNSQPEHRQAFRKEGGFFAEDERRFERWNDHHVKLLKHEFMRFKNAVVLWAMHPWERDARLIKEALKKGPNSNSVI- 101 (219)
Q Consensus 23 ~il~~rs~~q~~~i~~~Y~~~~~~~~~~~~~~~~L~~~l~~~~s~~~~~l~~~~~~p~~~dA~~L~~A~~g~gtd~~~l- 101 (219)
.+..-.+..|+++++++|.+-..+ =...|-++ +++.++-.+=..+.+..-...-+...|. .|..++
T Consensus 21 nvFamf~q~QIqEfKEAF~~mDqn----------rDG~Idke--DL~d~~aSlGk~~~d~elDaM~~Ea~gP-INft~FL 87 (171)
T KOG0031|consen 21 NVFAMFDQSQIQEFKEAFNLMDQN----------RDGFIDKE--DLRDMLASLGKIASDEELDAMMKEAPGP-INFTVFL 87 (171)
T ss_pred hHHHHhhHHHHHHHHHHHHHHhcc----------CCCcccHH--HHHHHHHHcCCCCCHHHHHHHHHhCCCC-eeHHHHH
Confidence 345556889999999999333222 11112111 4555554444444444444444433442 454443
Q ss_pred ---HHHhccCCHHHHHHHHHHHHhhhCccHHHHHhhccccc-----HHHHHHHHHhhhhccCCCCChhHHHHHHHHHHHh
Q 027774 102 ---VEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGK-----EKKLLVALVSAYRYEGPKVKEDVAKSEAKALISA 173 (219)
Q Consensus 102 ---i~il~~rs~~~l~~I~~~Y~~~yg~~L~~~i~~~~sg~-----~~~~l~~ll~~~r~e~~~v~~~~~~~da~~L~~A 173 (219)
-+-|++..|++ .|.++|+.- ..+-+|. ++.+|.. .|.| -...++..++..
T Consensus 88 TmfGekL~gtdpe~--~I~~AF~~F---------D~~~~G~I~~d~lre~Ltt--~gDr---------~~~eEV~~m~r~ 145 (171)
T KOG0031|consen 88 TMFGEKLNGTDPEE--VILNAFKTF---------DDEGSGKIDEDYLRELLTT--MGDR---------FTDEEVDEMYRE 145 (171)
T ss_pred HHHHHHhcCCCHHH--HHHHHHHhc---------CccCCCccCHHHHHHHHHH--hccc---------CCHHHHHHHHHh
Confidence 34444545432 345555321 1222332 3333333 3443 234566777776
Q ss_pred hhc-cccCCCCChhhHHHHhhc
Q 027774 174 VKN-AEKQNPIENDEVVRILST 194 (219)
Q Consensus 174 ~~~-~~~~~~~d~~~li~il~~ 194 (219)
+.. .+ + -.|-..|+.++.+
T Consensus 146 ~p~d~~-G-~~dy~~~~~~ith 165 (171)
T KOG0031|consen 146 APIDKK-G-NFDYKAFTYIITH 165 (171)
T ss_pred CCcccC-C-ceeHHHHHHHHHc
Confidence 553 11 1 1355567887764
No 11
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=45.84 E-value=50 Score=29.45 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=49.4
Q ss_pred hhhchhHHHHHHHhhhc---cHHHHHHHh-h---cCC---hHHHHHHHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHH
Q 027774 50 FERWNDHHVKLLKHEFM---RFKNAVVLW-A---MHP---WERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKA 119 (219)
Q Consensus 50 ~~~~~~~L~~~l~~~~s---~~~~~l~~~-~---~~p---~~~dA~~L~~A~~g~gtd~~~li~il~~rs~~~l~~I~~~ 119 (219)
++|+..+.+.....+.- +|.+++..- + .+| ..-+.+.+|+|+.-||||...|-.++-+|+..|+ +..
T Consensus 329 VDrHk~~~i~~ee~E~veen~~ar~vts~t~g~~~~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqI---KaK 405 (507)
T COG5118 329 VDRHKNASIEVEEMEVVEENPFARIVTSSTFGKKKGALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQI---KAK 405 (507)
T ss_pred EeccccccccHHHHHHhhccchhheeecccccCCCCCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHH---HHH
Confidence 34554445554444443 355554221 1 112 2457888999999999999999999988876554 444
Q ss_pred HHhh---hCccHHHHHhhc
Q 027774 120 YHSL---FEHSIEEDVASH 135 (219)
Q Consensus 120 Y~~~---yg~~L~~~i~~~ 135 (219)
|... ...-+.++++..
T Consensus 406 fi~Eek~nP~rIn~aL~~k 424 (507)
T COG5118 406 FIKEEKVNPERINEALNEK 424 (507)
T ss_pred HHHHhhhCHHHHHHHHhcc
Confidence 5432 333344555543
No 12
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=40.92 E-value=43 Score=22.93 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=16.6
Q ss_pred cCCHHHHHHHHHHHHhhhCcc
Q 027774 107 TRSSDELLGARKAYHSLFEHS 127 (219)
Q Consensus 107 ~rs~~~l~~I~~~Y~~~yg~~ 127 (219)
+-++.++..|+++|+..|...
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 357789999999999998544
No 13
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=38.92 E-value=1.6e+02 Score=22.97 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=40.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHh-hhccCchHHhhhchhHHHHHHHhhhc-cHHHHHHHhhcCChHHHHHHHHHHhhcCCC
Q 027774 19 KTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLWAMHPWERDARLIKEALKKGPN 96 (219)
Q Consensus 19 ~~li~il~~rs~~q~~~i~~~Y-~~~~~~~~~~~~~~~~L~~~l~~~~s-~~~~~l~~~~~~p~~~dA~~L~~A~~g~gt 96 (219)
.-+-+++.-.+.+++.++ | .....+ ......+..--| .|+.++-.++..| +...+...++..|.
T Consensus 105 g~~~di~~~lP~~~l~aL---~~~K~~~s--------~~F~~f~~~l~S~ef~~~~~~~~~~~---~~~~~~~~L~~~Gv 170 (179)
T PF06757_consen 105 GFVDDILALLPRDKLRAL---YEEKLATS--------PEFAEFVEALRSPEFQQLYNALWASP---EFQRLLNELRENGV 170 (179)
T ss_pred HHHHHHHHHCCHHHHHHH---HHHHHHCC--------HHHHHHHHHHcCHHHHHHHHHHHcCH---HHHHHHHHHHHcCC
Confidence 334555555565555544 4 433333 225555555555 6777777666655 44555555666667
Q ss_pred cHHHHHHH
Q 027774 97 SNSVIVEI 104 (219)
Q Consensus 97 d~~~li~i 104 (219)
|-+.+++.
T Consensus 171 dv~~l~~~ 178 (179)
T PF06757_consen 171 DVDYLLEL 178 (179)
T ss_pred CHHHHHHh
Confidence 76666553
No 14
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.37 E-value=52 Score=22.43 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=31.6
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHhcCC--CHHH---HHHHHHHh-hhcc
Q 027774 2 AEIEALIKAFSGHGVDEKTVISILGNS--QPEH---RQAFRKEG-GFFA 44 (219)
Q Consensus 2 ~da~~L~~A~~g~gtde~~li~il~~r--s~~q---~~~i~~~Y-~~~~ 44 (219)
+|...++.-.+|.|-|-.++-.|+.-| +.++ ..+|.+.| +..|
T Consensus 35 ~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er~EedAildlY~~aLg 83 (85)
T COG3750 35 DDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAERQEEDAILDLYMDALG 83 (85)
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhc
Confidence 578889999999999999998888766 3333 44566666 5443
No 15
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=37.83 E-value=78 Score=17.89 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=27.5
Q ss_pred hHHHHHHHHhcCCC-CCHHHHHHHhcCCCHHHHHH
Q 027774 2 AEIEALIKAFSGHG-VDEKTVISILGNSQPEHRQA 35 (219)
Q Consensus 2 ~da~~L~~A~~g~g-tde~~li~il~~rs~~q~~~ 35 (219)
+|-..|..++...| .+=..|...+.+||+.|...
T Consensus 7 ~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~ 41 (49)
T smart00717 7 EEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRE 41 (49)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHH
Confidence 45667888888888 78889999999999987765
No 16
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=36.86 E-value=92 Score=18.43 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=28.6
Q ss_pred hHHHHHHHHhcCCCCC-HHHHHHHhc-CCCHHHHHH
Q 027774 2 AEIEALIKAFSGHGVD-EKTVISILG-NSQPEHRQA 35 (219)
Q Consensus 2 ~da~~L~~A~~g~gtd-e~~li~il~-~rs~~q~~~ 35 (219)
+|-+.|.+|++-.|.+ =..|.+-+. +||+.|...
T Consensus 7 eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 7 EEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 4667889999988888 889999999 999988765
No 17
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=35.62 E-value=95 Score=20.17 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHhcCCCHHHH
Q 027774 5 EALIKAFSGHGVDEKTVISILGNSQPEHR 33 (219)
Q Consensus 5 ~~L~~A~~g~gtde~~li~il~~rs~~q~ 33 (219)
+.|.+|..| |+.++.+||....|-=.
T Consensus 2 ~vI~~A~~G---D~~A~~~IL~~y~~yI~ 27 (65)
T PF12645_consen 2 EVIKAAKQG---DPEAMEEILKHYEPYIS 27 (65)
T ss_pred HHHHHHHcC---CHHHHHHHHHHHHHHHH
Confidence 357788888 99999999999877544
No 18
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=35.14 E-value=84 Score=17.45 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=26.9
Q ss_pred hHHHHHHHHhcCCC-CCHHHHHHHhcCCCHHHHHH
Q 027774 2 AEIEALIKAFSGHG-VDEKTVISILGNSQPEHRQA 35 (219)
Q Consensus 2 ~da~~L~~A~~g~g-tde~~li~il~~rs~~q~~~ 35 (219)
.|-..|..++...| .+=..|...+.+||..|...
T Consensus 5 eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 5 EEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHH
Confidence 35567788888778 78888999998899987765
No 19
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.64 E-value=2.2e+02 Score=23.12 Aligned_cols=67 Identities=7% Similarity=0.031 Sum_probs=46.6
Q ss_pred CCHHHHHHHHHHHHhhhCccHHHHHhhcccccHHHHHHHHHhhhhccCCCCC-hhHHHHHHHHHHHhhh
Q 027774 108 RSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKLLVALVSAYRYEGPKVK-EDVAKSEAKALISAVK 175 (219)
Q Consensus 108 rs~~~l~~I~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~ll~~~r~e~~~v~-~~~~~~da~~L~~A~~ 175 (219)
++-.-++.|++.|.+.||.....++.-.+...|.+.|..-+...-+.-. +| ...+...+.+++.-|-
T Consensus 75 ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~-id~lskvkaqv~evk~vM~ 142 (217)
T KOG0859|consen 75 IPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE-ISKLAKVKAQVTEVKGVMM 142 (217)
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc-hhHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999998888888877888877666655432111 22 2455556666666653
No 20
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=28.47 E-value=78 Score=19.58 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=23.2
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHH
Q 027774 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQA 35 (219)
Q Consensus 2 ~da~~L~~A~~g~gtde~~li~il~~rs~~q~~~ 35 (219)
+|-+.|.++++-.|.+=..|.+.|.+||+.|.+.
T Consensus 4 eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~ 37 (60)
T PF13921_consen 4 EEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRN 37 (60)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHH
Confidence 3556777777766667788888886699966554
No 21
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=28.37 E-value=1.4e+02 Score=21.29 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHhcC-----CCHHHHHHH
Q 027774 3 EIEALIKAFSGHGVDEKTVISILGN-----SQPEHRQAF 36 (219)
Q Consensus 3 da~~L~~A~~g~gtde~~li~il~~-----rs~~q~~~i 36 (219)
|...++.-++|...+++.|-+||+. |+++|.-.+
T Consensus 34 ~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~ 72 (99)
T PF13758_consen 34 DLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDV 72 (99)
T ss_pred HHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHH
Confidence 4556777778888888888888887 777776654
No 22
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=27.21 E-value=2.3e+02 Score=20.10 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHhcCCCHHHHHHHHHHh
Q 027774 4 IEALIKAFSGHGVDEKTVISILGNSQPEHRQAFRKEG 40 (219)
Q Consensus 4 a~~L~~A~~g~gtde~~li~il~~rs~~q~~~i~~~Y 40 (219)
.+.|-.|++| +++...-.||.+-|+.....++..+
T Consensus 42 ~~~la~ALkg--a~~e~~~~il~nms~r~a~~l~~e~ 76 (110)
T PF01706_consen 42 PDDLALALKG--ASEELREKILSNMSKRAAEMLREEM 76 (110)
T ss_dssp HHHHHHHHCT--S-HHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HhHHHHHHcc--CCHHHHHHHHHHcCHHHHHHHHHHH
Confidence 3445556665 5666666666666776666666666
No 23
>PHA02613 48 baseplate subunit; Provisional
Probab=25.28 E-value=45 Score=28.88 Aligned_cols=106 Identities=12% Similarity=0.051 Sum_probs=60.9
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHhhhccCchHHhhhchhHHHHHHHhhhc--c---HHHHHHHhhcCChHHHHHHHHH
Q 027774 15 GVDEKTVISILGNSQPEHRQAFRKEGGFFAEDERRFERWNDHHVKLLKHEFM--R---FKNAVVLWAMHPWERDARLIKE 89 (219)
Q Consensus 15 gtde~~li~il~~rs~~q~~~i~~~Y~~~~~~~~~~~~~~~~L~~~l~~~~s--~---~~~~l~~~~~~p~~~dA~~L~~ 89 (219)
+.+...|.+||..|+..+.......|+.-+.+ .++|-|-.+...+....| - ++.+--..|.+.-++ ...--+
T Consensus 115 ~~~~~pianILlPRs~sDvd~~sHrfnDv~dS--litkGggt~tg~LS~~aS~av~GalESit~GimAD~~Eq-iy~~~r 191 (361)
T PHA02613 115 TFDKEPIANILLPRSKSDVDTNSHRFNDVGES--LITKGGGTATGALSNMASTAVFGALESITGGIMADRGEQ-IYTTAR 191 (361)
T ss_pred ccchhhhhhhhccCccccccccccccccchhh--HhhcCCCccchhHHHHHHHHHHHhhhhhcccccccccch-hhHhhH
Confidence 34778999999999999999888777222322 233333333333433333 1 222222223222221 112223
Q ss_pred Hh-hcCCCcHHHHHHHhccCCHHHHHHHHHHHHhh
Q 027774 90 AL-KKGPNSNSVIVEIASTRSSDELLGARKAYHSL 123 (219)
Q Consensus 90 A~-~g~gtd~~~li~il~~rs~~~l~~I~~~Y~~~ 123 (219)
|| .|....-.+...-|.-|+..++.+|-+.|+--
T Consensus 192 smy~GadnRTK~y~w~ltprs~~DL~eiikIY~~F 226 (361)
T PHA02613 192 SMYAGADNRTKVYTWTLTPRSREDLMEIIKIYELF 226 (361)
T ss_pred HHhcCccccceeEEEecccccHHHHHHHHHHHHHH
Confidence 33 34333455678889999999999999999763
No 24
>PF13766 ECH_C: 2-enoyl-CoA Hydratase C-terminal region; PDB: 3JU1_A 3BPT_A.
Probab=25.18 E-value=2.2e+02 Score=20.65 Aligned_cols=48 Identities=17% Similarity=0.011 Sum_probs=35.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHhhhCccHHHHHhhcc--------cccHHHHHHHHH
Q 027774 101 IVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHI--------HGKEKKLLVALV 148 (219)
Q Consensus 101 li~il~~rs~~~l~~I~~~Y~~~yg~~L~~~i~~~~--------sg~~~~~l~~ll 148 (219)
..+.|.++||.-+......++.-.+.+|.+.+.-++ .|+|...+-++|
T Consensus 36 ~~~~l~~~SP~Sl~vt~~~l~~~~~~sl~e~l~~E~~~a~~~~~~~DF~EGVRA~L 91 (118)
T PF13766_consen 36 TLETLRSGSPLSLKVTFEQLRRGRNLSLAECLRMEYRLASRCMRHPDFAEGVRALL 91 (118)
T ss_dssp HHHHHCCS-HHHHHHHHHHHHCCTTS-HHHHHHHHHHHHHHHHCCSCHHHHHHHHT
T ss_pred HHHHHHHCCHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 457778888998888888888888899988887664 467777666665
No 25
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=24.50 E-value=2e+02 Score=19.05 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=31.8
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHhhhccCchHHhhhchhHHHHHHHhhhc
Q 027774 18 EKTVISILGNS-QPEHRQAFRKEGGFFAEDERRFERWNDHHVKLLKHEFM 66 (219)
Q Consensus 18 e~~li~il~~r-s~~q~~~i~~~Y~~~~~~~~~~~~~~~~L~~~l~~~~s 66 (219)
-..|+.+|... ++.++..|...|..|.+. +-.+++++..++..++
T Consensus 11 F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~----kIsR~~fvr~lR~IVG 56 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKMDLLQKHYEEFKKK----KISREEFVRKLRQIVG 56 (70)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
Confidence 34556666554 889999999999656654 5566778888777766
No 26
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=24.07 E-value=1.9e+02 Score=27.60 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=44.6
Q ss_pred CCHHHHHHHhcCCCHHHHHHHHHHh-h-hccCchHHhhhchhHHHHHHHhhhc-cHHHHHHHhhcC---ChHHHHHHHHH
Q 027774 16 VDEKTVISILGNSQPEHRQAFRKEG-G-FFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLWAMH---PWERDARLIKE 89 (219)
Q Consensus 16 tde~~li~il~~rs~~q~~~i~~~Y-~-~~~~~~~~~~~~~~~L~~~l~~~~s-~~~~~l~~~~~~---p~~~dA~~L~~ 89 (219)
..-..+..++++.||-|+..++++| + .+.+. ..-....+. .|.+.+..|-.. ...+....|-.
T Consensus 237 l~~~~l~nLvGnlSN~qlk~LrrYfnDk~~~k~-----------d~wdeqkf~~~~~r~v~~wrh~K~d~~~~~~knli~ 305 (802)
T TIGR03031 237 LPSVCLSNLLGNLSNLQLKNLRRYFNDKIHKKP-----------DQWDEQKFGNEFLRMLKNWRHLKGDQESLAVRNLIQ 305 (802)
T ss_pred CchhhHHHHhhhhhhhhHHHHHHHhcccccccc-----------ccccHhHHHHHHHHHHHhccCcCCcHhHHHHHHHHH
Confidence 3446788999999999999999999 3 33332 222333444 577777766322 23333444444
Q ss_pred HhhcCCCcHHHHHHHhcc
Q 027774 90 ALKKGPNSNSVIVEIAST 107 (219)
Q Consensus 90 A~~g~gtd~~~li~il~~ 107 (219)
-+++. ..++++|.+
T Consensus 306 ~lKqk----~~~i~~L~~ 319 (802)
T TIGR03031 306 QLKQK----QDYISILEK 319 (802)
T ss_pred HHhcc----chHHHHHHh
Confidence 44442 145555544
No 27
>PRK10236 hypothetical protein; Provisional
Probab=22.31 E-value=4.6e+02 Score=21.84 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=15.3
Q ss_pred HHHHHHHhhhCccHHHHHhhcccccHHHHHHHHHhh
Q 027774 115 GARKAYHSLFEHSIEEDVASHIHGKEKKLLVALVSA 150 (219)
Q Consensus 115 ~I~~~Y~~~yg~~L~~~i~~~~sg~~~~~l~~ll~~ 150 (219)
.|.+.++..=|-++.-.++... ..|+.+|.-++..
T Consensus 65 ~Ia~elq~fGgnt~~n~lRG~G-v~YreIL~DVc~~ 99 (237)
T PRK10236 65 LIAGELQHFGGDSIANKLRGHG-KLYRAILLDVSKR 99 (237)
T ss_pred HHHHHHHHhcchHHHHHHhcCC-ccHHHHHHHHHHH
Confidence 3444444433444444444221 1455555555443
No 28
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.09 E-value=2.8e+02 Score=18.82 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=29.8
Q ss_pred cHHHHHHHhhcCChHHHHHHHHHHhhcCCCcHHHHHHHhccCCHHHHHHHHHHHHhhhCc
Q 027774 67 RFKNAVVLWAMHPWERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEH 126 (219)
Q Consensus 67 ~~~~~l~~~~~~p~~~dA~~L~~A~~g~gtd~~~li~il~~rs~~~l~~I~~~Y~~~yg~ 126 (219)
-.-++-+.+=++|.+..|-..++... .++..+++.|++.||=
T Consensus 14 a~~dl~LyLDTHP~d~~Al~~y~~~~------------------~~~~~l~~~Ye~~yGP 55 (78)
T PF12652_consen 14 AVVDLNLYLDTHPDDQEALEYYNEYS------------------KQRKQLKKEYEKRYGP 55 (78)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHH------------------HHHHHHHHHHHHHhCC
Confidence 34455566667888888877777553 3567788899999883
No 29
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.18 E-value=2.4e+02 Score=19.00 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHhcCC--CHHHHH---HHHHHh
Q 027774 2 AEIEALIKAFSGHGVDEKTVISILGNS--QPEHRQ---AFRKEG 40 (219)
Q Consensus 2 ~da~~L~~A~~g~gtde~~li~il~~r--s~~q~~---~i~~~Y 40 (219)
.|...++.=.||.|-|...+-.|+.-| ++.+++ .|...|
T Consensus 25 ~dikdVyaEAK~~GfD~K~lr~ii~lRk~d~~~r~E~eail~~Y 68 (74)
T PF10073_consen 25 DDIKDVYAEAKGNGFDTKALRQIIRLRKKDPDEREEEEAILDLY 68 (74)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHcCCHhHHHHHHHHHHHH
Confidence 467778888899999999988887766 555554 455555
Done!