Query 027775
Match_columns 219
No_of_seqs 118 out of 150
Neff 4.9
Searched_HMMs 29240
Date Tue Mar 26 01:44:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fhg_A Mjogg, N-glycosylase/DN 98.0 4.6E-05 1.6E-09 64.3 11.4 85 103-193 111-203 (207)
2 3fhf_A Mjogg, N-glycosylase/DN 98.0 0.0001 3.6E-09 63.0 12.8 89 98-193 113-210 (214)
3 3n0u_A Probable N-glycosylase/ 97.8 0.00021 7.1E-09 61.3 11.3 84 103-192 123-214 (219)
4 2xhi_A N-glycosylase/DNA lyase 96.5 0.031 1.1E-06 50.9 12.1 80 103-191 247-337 (360)
5 3s6i_A DNA-3-methyladenine gly 96.2 0.0083 2.8E-07 51.3 6.5 54 104-158 134-193 (228)
6 2h56_A DNA-3-methyladenine gly 96.0 0.023 7.7E-07 48.6 8.2 38 105-143 134-173 (233)
7 4e9f_A Methyl-CPG-binding doma 95.8 0.0046 1.6E-07 50.6 2.9 72 57-131 44-126 (161)
8 3i0w_A 8-oxoguanine-DNA-glycos 95.7 0.0068 2.3E-07 53.5 3.8 39 103-143 205-245 (290)
9 4b21_A Probable DNA-3-methylad 95.6 0.026 8.7E-07 48.5 7.0 33 104-136 145-179 (232)
10 1mpg_A ALKA, 3-methyladenine D 95.0 0.041 1.4E-06 48.0 6.4 44 103-147 201-246 (282)
11 2yg9_A DNA-3-methyladenine gly 95.0 0.019 6.5E-07 48.9 4.2 33 103-135 140-174 (225)
12 1pu6_A 3-methyladenine DNA gly 94.6 0.032 1.1E-06 47.1 4.5 27 104-130 116-142 (218)
13 2jhn_A ALKA, 3-methyladenine D 94.4 0.084 2.9E-06 46.4 6.8 37 105-142 206-243 (295)
14 2abk_A Endonuclease III; DNA-r 94.2 0.1 3.5E-06 43.6 6.7 37 105-143 105-143 (211)
15 1kea_A Possible G-T mismatches 94.1 0.052 1.8E-06 45.8 4.8 25 106-130 112-136 (221)
16 1orn_A Endonuclease III; DNA r 93.3 0.078 2.7E-06 45.0 4.5 36 106-143 110-147 (226)
17 1kg2_A A/G-specific adenine gl 93.2 0.08 2.7E-06 44.7 4.5 36 106-142 106-141 (225)
18 3fsp_A A/G-specific adenine gl 92.6 0.1 3.5E-06 46.9 4.4 38 106-143 115-152 (369)
19 3n5n_X A/G-specific adenine DN 92.0 0.15 5E-06 45.3 4.6 35 107-142 126-161 (287)
20 3arc_U Photosystem II 12 kDa e 91.2 0.055 1.9E-06 41.0 0.8 37 106-147 23-59 (97)
21 1s5l_U Photosystem II 12 kDa e 90.7 0.063 2.2E-06 43.1 0.8 38 106-148 60-97 (134)
22 2duy_A Competence protein come 89.2 0.21 7.2E-06 34.9 2.4 36 107-147 25-60 (75)
23 2i5h_A Hypothetical protein AF 87.5 0.13 4.5E-06 43.9 0.5 63 78-147 106-169 (205)
24 2a1j_B DNA excision repair pro 86.4 1.3 4.5E-05 31.9 5.4 42 83-129 11-52 (91)
25 1x2i_A HEF helicase/nuclease; 86.2 0.51 1.7E-05 32.2 2.9 24 107-130 44-67 (75)
26 2edu_A Kinesin-like protein KI 83.9 0.32 1.1E-05 35.8 1.1 50 107-161 38-87 (98)
27 2ztd_A Holliday junction ATP-d 83.4 0.63 2.1E-05 39.6 2.8 29 104-132 83-111 (212)
28 3u5c_S 40S ribosomal protein S 81.6 1.1 3.7E-05 36.3 3.4 48 107-154 28-81 (146)
29 1ixr_A Holliday junction DNA h 81.3 0.85 2.9E-05 38.0 2.8 27 105-131 68-94 (191)
30 2a1j_A DNA repair endonuclease 78.8 0.71 2.4E-05 31.7 1.3 21 108-128 3-23 (63)
31 1x2i_A HEF helicase/nuclease; 78.3 1.9 6.5E-05 29.2 3.4 24 106-129 11-34 (75)
32 1z00_A DNA excision repair pro 78.1 1.8 6.2E-05 30.9 3.4 24 106-129 16-39 (89)
33 3iz6_M 40S ribosomal protein S 78.0 3 0.0001 33.8 5.0 51 105-155 24-80 (152)
34 1cuk_A RUVA protein; DNA repai 77.8 1.2 4E-05 37.5 2.6 27 105-131 69-95 (203)
35 1kft_A UVRC, excinuclease ABC 77.7 1.6 5.4E-05 30.5 2.9 23 107-129 54-76 (78)
36 1z00_A DNA excision repair pro 76.2 1.8 6.2E-05 30.9 2.9 24 107-130 49-72 (89)
37 3r8n_M 30S ribosomal protein S 76.2 3.1 0.00011 32.2 4.4 39 106-144 13-54 (114)
38 2a1j_B DNA excision repair pro 75.2 1.9 6.4E-05 31.1 2.7 22 108-129 63-84 (91)
39 1kft_A UVRC, excinuclease ABC 73.6 1.5 5E-05 30.7 1.8 21 109-129 24-44 (78)
40 1z00_B DNA repair endonuclease 69.7 3.2 0.00011 30.2 2.9 23 106-128 15-37 (84)
41 3j20_O 30S ribosomal protein S 68.9 4.8 0.00016 32.5 4.1 39 106-144 20-61 (148)
42 2xzm_M RPS18E; ribosome, trans 68.5 5.4 0.00018 32.5 4.3 40 105-144 26-68 (155)
43 3vdp_A Recombination protein R 68.1 2.7 9.3E-05 35.9 2.5 22 104-125 21-42 (212)
44 2fmp_A DNA polymerase beta; nu 66.6 5.7 0.00019 35.5 4.5 63 105-172 94-170 (335)
45 2bcq_A DNA polymerase lambda; 66.4 2 7E-05 38.4 1.5 23 108-130 56-78 (335)
46 2fmp_A DNA polymerase beta; nu 65.2 2.3 7.8E-05 38.1 1.6 33 98-130 46-78 (335)
47 2vqe_M 30S ribosomal protein S 63.9 5.1 0.00017 31.6 3.2 40 106-145 14-56 (126)
48 3ory_A Flap endonuclease 1; hy 62.2 15 0.0005 33.2 6.4 70 113-190 255-340 (363)
49 2w9m_A Polymerase X; SAXS, DNA 61.0 4.7 0.00016 38.4 3.0 24 105-128 93-116 (578)
50 2ihm_A POL MU, DNA polymerase 60.3 5.3 0.00018 36.1 3.0 25 104-128 97-121 (360)
51 1vdd_A Recombination protein R 60.1 4.7 0.00016 34.8 2.5 22 104-125 7-28 (228)
52 1vq8_Y 50S ribosomal protein L 58.7 2 6.9E-05 37.1 0.0 23 106-128 12-34 (241)
53 3b0x_A DNA polymerase beta fam 57.4 5.9 0.0002 37.6 3.0 24 105-128 89-112 (575)
54 2ztd_A Holliday junction ATP-d 56.5 21 0.00073 30.0 6.0 25 108-132 122-146 (212)
55 1jms_A Terminal deoxynucleotid 56.0 6.8 0.00023 35.7 3.0 25 104-128 116-140 (381)
56 2bcq_A DNA polymerase lambda; 54.0 6.5 0.00022 35.1 2.5 61 107-172 94-167 (335)
57 3bqs_A Uncharacterized protein 53.0 21 0.00072 26.3 4.8 57 108-164 3-62 (93)
58 2ihm_A POL MU, DNA polymerase 52.5 3.4 0.00011 37.4 0.4 32 99-130 51-82 (360)
59 3mab_A Uncharacterized protein 51.2 3.9 0.00013 30.4 0.5 23 107-129 2-24 (93)
60 2bgw_A XPF endonuclease; hydro 49.2 10 0.00035 31.1 2.8 22 108-129 161-182 (219)
61 1ci4_A Protein (barrier-TO-aut 49.1 6.5 0.00022 29.4 1.4 19 110-128 19-37 (89)
62 1wcn_A Transcription elongatio 48.4 1.6 5.5E-05 30.7 -1.9 52 87-140 17-69 (70)
63 1jms_A Terminal deoxynucleotid 44.6 5.4 0.00018 36.4 0.4 32 99-130 70-101 (381)
64 2nrt_A Uvrabc system protein C 44.5 12 0.0004 32.0 2.5 22 108-129 167-188 (220)
65 2kp7_A Crossover junction endo 43.6 7.3 0.00025 28.5 0.9 29 99-127 48-76 (87)
66 3psf_A Transcription elongatio 40.5 23 0.00078 36.6 4.3 35 108-142 716-750 (1030)
67 4gfj_A Topoisomerase V; helix- 40.3 14 0.00048 35.4 2.5 21 108-128 467-487 (685)
68 1ixr_A Holliday junction DNA h 38.9 17 0.00057 30.1 2.5 25 107-131 105-129 (191)
69 3oao_A Uncharacterized protein 37.1 27 0.00091 27.9 3.4 62 54-120 78-143 (147)
70 1cuk_A RUVA protein; DNA repai 37.1 18 0.00062 30.1 2.5 23 107-129 106-128 (203)
71 3psi_A Transcription elongatio 35.0 25 0.00087 36.9 3.7 35 108-142 713-747 (1219)
72 3c65_A Uvrabc system protein C 33.0 9.1 0.00031 32.8 0.0 22 108-129 172-193 (226)
73 3sgi_A DNA ligase; HET: DNA AM 32.4 9.5 0.00032 37.2 0.0 13 55-67 487-499 (615)
74 1b22_A DNA repair protein RAD5 31.2 26 0.00088 26.8 2.3 43 87-129 35-78 (114)
75 2bgw_A XPF endonuclease; hydro 30.2 28 0.00097 28.4 2.6 23 107-129 192-214 (219)
76 1vq8_Y 50S ribosomal protein L 29.6 11 0.00038 32.3 0.0 33 97-129 35-68 (241)
77 3bbn_M Ribosomal protein S13; 29.4 7.8 0.00027 31.3 -1.0 25 105-129 58-82 (145)
78 1exn_A 5'-exonuclease, 5'-nucl 27.0 26 0.0009 30.8 1.9 16 114-129 208-223 (290)
79 2w9m_A Polymerase X; SAXS, DNA 26.5 26 0.00089 33.3 1.9 41 88-128 108-150 (578)
80 2ziu_A MUS81 protein; helix-ha 24.6 41 0.0014 29.0 2.7 24 107-131 235-258 (311)
81 4glx_A DNA ligase; inhibitor, 22.5 58 0.002 31.4 3.5 22 107-128 542-563 (586)
82 2fsu_A Protein PHNH; C-P lyase 22.3 67 0.0023 27.1 3.5 22 115-137 58-79 (210)
83 1ul1_X Flap endonuclease-1; pr 22.3 44 0.0015 30.0 2.5 22 107-128 224-251 (379)
84 3c1y_A DNA integrity scanning 21.8 47 0.0016 30.5 2.6 42 85-127 323-365 (377)
85 3bzc_A TEX; helix-turn-helix, 21.3 29 0.00098 34.8 1.1 34 106-140 505-538 (785)
No 1
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=98.03 E-value=4.6e-05 Score=64.28 Aligned_cols=85 Identities=21% Similarity=0.268 Sum_probs=65.6
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHh-hcCCCCCcccHHHHHHh--cC---C--CCCCCHHHHHHHHHHHHHHHHHhccc
Q 027775 103 DLTKAVSELTVLKGVGPATASAVLAA-YAPGVAPFMSDEAMGAA--LG---H--SKDYSLRQYLLFADKLQAKAKELVSE 174 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~-~~P~~~pFfsDEa~~~~--~g---~--~~kYt~keY~~~~~~l~~~~~~L~~~ 174 (219)
+...+++.|++||||||-||++||.. ..++. +..++-+...+ +| . +..-|.++|.++-..++..++.++
T Consensus 111 ~~~~~~~~L~~lpGIG~kTA~~il~~~~~~~~-~~vD~~v~Ri~~rlg~~~~~~~k~~~~k~y~~~~~~l~~~~~~~~-- 187 (207)
T 3fhg_A 111 DQQLARERLLNIKGIGMQEASHFLRNVGYFDL-AIIDRHIIDFMRRIGAIGETNVKQLSKSLYISFENILKSIASNLN-- 187 (207)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHTTCCSS-CCCCHHHHHHHHHTTSSCCCCCSCCCHHHHHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHcCCCcCHHHHHHHHHHhCCCCc-ceecHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHHHHHhC--
Confidence 45578999999999999999999995 55432 33455555432 23 1 346789999999999999999984
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q 027775 175 ENCFTPFDVERALWSSAIG 193 (219)
Q Consensus 175 ~~~~s~~~VEkalws~~v~ 193 (219)
+++..++.++|...-+
T Consensus 188 ---~~~~~lDl~lw~~~~g 203 (207)
T 3fhg_A 188 ---MSVGILDLFIWYKETN 203 (207)
T ss_dssp ---SCHHHHHHHHHHHHHS
T ss_pred ---CCHHHHHHHHHHHHhC
Confidence 8899999999987544
No 2
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=97.97 E-value=0.0001 Score=63.04 Aligned_cols=89 Identities=21% Similarity=0.249 Sum_probs=66.9
Q ss_pred HhhCccHHHHHHHhh-ccCCCChHHHHHHHHhhcCCCCCcc-cHH-HHHHh--cC----CCCCCCHHHHHHHHHHHHHHH
Q 027775 98 FKSLPDLTKAVSELT-VLKGVGPATASAVLAAYAPGVAPFM-SDE-AMGAA--LG----HSKDYSLRQYLLFADKLQAKA 168 (219)
Q Consensus 98 f~~l~d~~~al~~L~-~LkGVGPATASaiLa~~~P~~~pFf-sDE-a~~~~--~g----~~~kYt~keY~~~~~~l~~~~ 168 (219)
|..+.++..+++.|. +||||||-||++||....- .+|+ -|- +...+ +| .+...|.+.|.++-..++..+
T Consensus 113 ~~~~~~~~~~re~Ll~~LpGVG~KTA~~vL~~~g~--~~~~vVDthv~Ri~~RlG~~~~~~k~lt~~~y~e~~~~l~~~g 190 (214)
T 3fhf_A 113 VESFENEKVAREFLVRNIKGIGYKEASHFLRNVGY--DDVAIIDRHILRELYENNYIDEIPKTLSRRKYLEIENILRDIG 190 (214)
T ss_dssp HHHSSSHHHHHHHHHHHSTTCCHHHHHHHHHHTTC--CSCCCCCHHHHHHHHHTTSSSSCCSSCCHHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCCCCHHHHHHHHHHcCC--CCcccCcHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 333346788999999 9999999999999986422 2444 454 33322 34 245678899999999999999
Q ss_pred HHhcccCCCCCHHHHHHHHHHHHHh
Q 027775 169 KELVSEENCFTPFDVERALWSSAIG 193 (219)
Q Consensus 169 ~~L~~~~~~~s~~~VEkalws~~v~ 193 (219)
+.++ +++..+..++|....+
T Consensus 191 ~~~g-----~~~g~lDl~lW~~~tg 210 (214)
T 3fhf_A 191 EEVN-----LKLSELDLYIWYLRTG 210 (214)
T ss_dssp HHTT-----CCHHHHHHHHHHHHHS
T ss_pred HHHC-----CCHHHHHHHHHHHHhC
Confidence 9994 8899999999987543
No 3
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.78 E-value=0.00021 Score=61.32 Aligned_cols=84 Identities=23% Similarity=0.256 Sum_probs=65.6
Q ss_pred cHHHHHHHhh-ccCCCChHHHHHHHHh-hcCCCCCcccHHHHHHh--cC----CCCCCCHHHHHHHHHHHHHHHHHhccc
Q 027775 103 DLTKAVSELT-VLKGVGPATASAVLAA-YAPGVAPFMSDEAMGAA--LG----HSKDYSLRQYLLFADKLQAKAKELVSE 174 (219)
Q Consensus 103 d~~~al~~L~-~LkGVGPATASaiLa~-~~P~~~pFfsDEa~~~~--~g----~~~kYt~keY~~~~~~l~~~~~~L~~~ 174 (219)
++..+++.|+ .||||||-||++||.. ..++.+| .++-+...+ .| .+..-|.+.|.++-+.+++.+++++
T Consensus 123 ~~~~~r~~L~~~l~GVG~kTA~~vL~~~g~~~~~~-VDthv~Ri~~rlg~~~~~~k~~t~k~y~~ie~~~~~~a~~~g-- 199 (219)
T 3n0u_A 123 DPFQSREFLVRNAKGIGWKEASHFLRNTGVEDLAI-LDKHVLRLMKRHGLIQEIPKGWSKKRYLYVEEILRKVAEAFG-- 199 (219)
T ss_dssp CHHHHHHHHHHHSTTCCHHHHHHHHHTTTCCSCCC-CCHHHHHHHHHTTSCSSCCSSCCHHHHHHHHHHHHHHHHHHT--
T ss_pred CcHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCeee-ecHHHHHHHHHcCCCCcCcCcCCHHHHHHHHHHHHHHHHHHC--
Confidence 5778999999 9999999999999975 3433433 455555432 23 2446789999999999999999994
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 027775 175 ENCFTPFDVERALWSSAI 192 (219)
Q Consensus 175 ~~~~s~~~VEkalws~~v 192 (219)
+++..+...+|....
T Consensus 200 ---~~~~~ldl~lW~~~~ 214 (219)
T 3n0u_A 200 ---ESPGKFDLYLWYLVK 214 (219)
T ss_dssp ---CCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHh
Confidence 889999999998644
No 4
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=96.45 E-value=0.031 Score=50.88 Aligned_cols=80 Identities=16% Similarity=0.157 Sum_probs=49.9
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHh--hcCCCCCcccHHHHH---HhcCC--C----CCCCHHHHHHHHHHHHHHHHHh
Q 027775 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAMG---AALGH--S----KDYSLRQYLLFADKLQAKAKEL 171 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfsDEa~~---~~~g~--~----~kYt~keY~~~~~~l~~~~~~L 171 (219)
+...+++.|++||||||-||.+||.. ..|+.+|+ +.-+.. ...|- . ...+.+.|..+...+.+. .
T Consensus 247 ~~~~~~~~L~~LpGIGp~TA~~ill~alg~pd~fpv-DthV~Ri~~r~~gl~~~~~~~k~~~~~~~~~l~~~~~e~---w 322 (360)
T 2xhi_A 247 SYEEAHKALCILPGVGTCVADKICLMALDKPQAVPV-NVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSL---W 322 (360)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCC-SHHHHHHHHHHHCCCCSSCSCSSCCHHHHHHHHHHHHHH---H
T ss_pred CHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCEEEe-cHHHHHHHHHHhCcccccccccCCChHHHHHHHHHHHHH---H
Confidence 34589999999999999999999986 47777775 333332 22342 1 123467788776665333 3
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 027775 172 VSEENCFTPFDVERALWSSA 191 (219)
Q Consensus 172 ~~~~~~~s~~~VEkalws~~ 191 (219)
+ .| ..-.-..||.+.
T Consensus 323 ~----p~-~~~a~~yLw~~~ 337 (360)
T 2xhi_A 323 G----PY-AGWAQAVLFSAD 337 (360)
T ss_dssp C----TT-HHHHHHHHHHHH
T ss_pred H----HH-HHHHHHHHHHhh
Confidence 2 11 233455677554
No 5
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=96.21 E-value=0.0083 Score=51.28 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=35.9
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHh--hcCCCCCcccHHHH----HHhcCCCCCCCHHHHH
Q 027775 104 LTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAM----GAALGHSKDYSLRQYL 158 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfsDEa~----~~~~g~~~kYt~keY~ 158 (219)
...+++.|+.||||||-||.+||.. ..|+.+| .+|-.+ ..+.|.+..-+.++..
T Consensus 134 ~~e~~~~L~~l~GIG~~TA~~ill~~lg~pd~fp-vdD~~v~r~~~~~~~~~~~~~~~~~~ 193 (228)
T 3s6i_A 134 NEELIERLTQIKGIGRWTVEMLLIFSLNRDDVMP-ADDLSIRNGYRYLHRLPKIPTKMYVL 193 (228)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCC-TTCHHHHHHHHHHTTCSSCCCHHHHH
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCEEe-cccHHHHHHHHHHhCCCCCCCHHHHH
Confidence 4568999999999999999999976 4676666 334333 3444533333544433
No 6
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=96.00 E-value=0.023 Score=48.59 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=29.6
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--cCCCCCcccHHHHH
Q 027775 105 TKAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAMG 143 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~~pFfsDEa~~ 143 (219)
..+++.|++||||||-||.+||... .|+.+| .+|=.+.
T Consensus 134 ~~~~~~L~~lpGIG~kTA~~ill~alg~pd~~p-vdd~~~r 173 (233)
T 2h56_A 134 TTVIEKLTAIKGIGQWTAEMFMMFSLGRLDVLS-VGDVGLQ 173 (233)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCSCCCC-TTCHHHH
T ss_pred HHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeee-CchHHHH
Confidence 4789999999999999999999863 666655 4454443
No 7
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=95.82 E-value=0.0046 Score=50.62 Aligned_cols=72 Identities=18% Similarity=0.093 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHhhcCCCCcchHHHhhhCCHHHHHHHHHH-------HHhhCc----cHHHHHHHhhccCCCChHHHHHH
Q 027775 57 NTTELSKLVRWKLTRGKWRPRLLDFVSSLDDSSVKSASEK-------AFKSLP----DLTKAVSELTVLKGVGPATASAV 125 (219)
Q Consensus 57 tk~EL~~Lv~WKL~rGkfRP~L~~lV~sN~~~~V~~~t~~-------Af~~l~----d~~~al~~L~~LkGVGPATASai 125 (219)
|+++-+.-+-.+|.. + -|+...+.+.. ++.|.++.+- |-.+.. .+....+.|.+|+||||-||.+|
T Consensus 44 T~~~~v~~~~~~l~~-~-~pt~~~la~a~-~~el~~~i~~lG~y~~KAk~i~~~a~~~vp~~~~~L~~LpGVG~yTAdav 120 (161)
T 4e9f_A 44 TSGKMAIPVLWKFLE-K-YPSAEVARTAD-WRDVSELLKPLGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSY 120 (161)
T ss_dssp SCHHHHHHHHHHHHH-H-SCSHHHHTTSC-HHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCCSSGGGSTTCCHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-H-CCCHHHHhccC-hHhHHhHhhhcCCHHHHHHHHHHHhCCcCCCChhhhhcCCCchHHHHHHH
Confidence 567777766667653 2 36766665544 4455544321 111100 13335667999999999999999
Q ss_pred HHhhcC
Q 027775 126 LAAYAP 131 (219)
Q Consensus 126 La~~~P 131 (219)
+++..-
T Consensus 121 ~~F~~~ 126 (161)
T 4e9f_A 121 RIFCVN 126 (161)
T ss_dssp HHHTSS
T ss_pred HHHHCC
Confidence 998644
No 8
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=95.71 E-value=0.0068 Score=53.53 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=32.0
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHh--hcCCCCCcccHHHHH
Q 027775 103 DLTKAVSELTVLKGVGPATASAVLAA--YAPGVAPFMSDEAMG 143 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~--~~P~~~pFfsDEa~~ 143 (219)
+...+++.|++||||||-||..||.. ..|+.+|. |-...
T Consensus 205 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpv--D~~v~ 245 (290)
T 3i0w_A 205 NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPV--DTWVK 245 (290)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCC--CHHHH
T ss_pred CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCccee--cHHHH
Confidence 46789999999999999999999965 57888886 54443
No 9
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=95.61 E-value=0.026 Score=48.45 Aligned_cols=33 Identities=18% Similarity=0.115 Sum_probs=27.4
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHhh--cCCCCCc
Q 027775 104 LTKAVSELTVLKGVGPATASAVLAAY--APGVAPF 136 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~~--~P~~~pF 136 (219)
...+++.|+.||||||-||.+||... .|+.+|+
T Consensus 145 ~~~~~~~L~~l~GIG~~TA~~ill~alg~pd~fpv 179 (232)
T 4b21_A 145 EEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPA 179 (232)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHTSCCSSCCCT
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCeeeC
Confidence 34789999999999999999999874 5766663
No 10
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=95.01 E-value=0.041 Score=47.97 Aligned_cols=44 Identities=23% Similarity=0.202 Sum_probs=33.8
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHhh--cCCCCCcccHHHHHHhcC
Q 027775 103 DLTKAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAMGAALG 147 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~~--~P~~~pFfsDEa~~~~~g 147 (219)
+...+++.|++||||||-||.+||... .|+.+| .+|-.+.-.++
T Consensus 201 ~~~~~~~~L~~lpGIG~~TA~~ill~~lg~~d~~p-vdd~~~r~~l~ 246 (282)
T 1mpg_A 201 DVEQAMKTLQTFPGIGRWTANYFALRGWQAKDVFL-PDDYLIKQRFP 246 (282)
T ss_dssp CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCSSCCC-TTCHHHHHHST
T ss_pred CHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCCcCc-cccHHHHHHhc
Confidence 667899999999999999999999864 566544 45666654443
No 11
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.01 E-value=0.019 Score=48.88 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=27.6
Q ss_pred cHHHHHHHhhccCCCChHHHHHHHHhh--cCCCCC
Q 027775 103 DLTKAVSELTVLKGVGPATASAVLAAY--APGVAP 135 (219)
Q Consensus 103 d~~~al~~L~~LkGVGPATASaiLa~~--~P~~~p 135 (219)
+...+++.|+.||||||=||.+||... .|+.+|
T Consensus 140 ~~~e~~~~L~~l~GIG~~TA~~ill~~lg~~d~fp 174 (225)
T 2yg9_A 140 PDELVIAELVQLPGIGRWTAEMFLLFALARPDVFS 174 (225)
T ss_dssp CHHHHHHHHHTSTTCCHHHHHHHHHHTSCCSCCCC
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCeee
Confidence 456789999999999999999999873 566656
No 12
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=94.56 E-value=0.032 Score=47.14 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.3
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHhhc
Q 027775 104 LTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~~~ 130 (219)
...+++.|++||||||-||.+||....
T Consensus 116 ~~~~~~~L~~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 116 QEVTREWLLDQKGIGKESADAILCYAC 142 (218)
T ss_dssp HHCCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred chHHHHHHHcCCCcCHHHHHHHHHHHC
Confidence 455788999999999999999999743
No 13
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=94.36 E-value=0.084 Score=46.41 Aligned_cols=37 Identities=35% Similarity=0.423 Sum_probs=28.7
Q ss_pred HHHHHHhhccCCCChHHHHHHHHh-hcCCCCCcccHHHH
Q 027775 105 TKAVSELTVLKGVGPATASAVLAA-YAPGVAPFMSDEAM 142 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~-~~P~~~pFfsDEa~ 142 (219)
.++++.|++||||||-||.+||.. +.|+.+| .+|=.+
T Consensus 206 ~e~~~~L~~lpGIG~~TA~~ill~~lg~d~fp-vdD~~~ 243 (295)
T 2jhn_A 206 EEAYEYLTSFKGIGRWTAELVLSIALGKNVFP-ADDLGV 243 (295)
T ss_dssp HHHHHHHHTSTTCCHHHHHHHHHHTTCCCCCC-TTCHHH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHHccCCCccc-chHHHH
Confidence 678999999999999999999985 2376656 344443
No 14
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=94.22 E-value=0.1 Score=43.60 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=26.9
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--cCCCCCcccHHHHH
Q 027775 105 TKAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAMG 143 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~~~pFfsDEa~~ 143 (219)
..+++.|++||||||-||.+||... .| .+| .++-+..
T Consensus 105 ~~~~~~L~~l~GIG~~tA~~il~~~~~~~-~~~-vD~~v~R 143 (211)
T 2abk_A 105 PEDRAALEALPGVGRKTANVVLNTAFGWP-TIA-VDTHIFR 143 (211)
T ss_dssp CSCHHHHHHSTTCCHHHHHHHHHHHHCCC-CCC-CCHHHHH
T ss_pred hHHHHHHHhCCCCChHHHHHHHHHHCCCC-cCC-cCHHHHH
Confidence 3467889999999999999999974 44 333 3444443
No 15
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=94.13 E-value=0.052 Score=45.84 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.9
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhc
Q 027775 106 KAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~ 130 (219)
.+++.|++||||||-||.+||....
T Consensus 112 ~~~~~L~~lpGIG~~TA~~il~~~~ 136 (221)
T 1kea_A 112 RNRKAILDLPGVGKYTCAAVMCLAF 136 (221)
T ss_dssp SCHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHhc
Confidence 4578899999999999999999753
No 16
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=93.28 E-value=0.078 Score=44.99 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=27.1
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh--cCCCCCcccHHHHH
Q 027775 106 KAVSELTVLKGVGPATASAVLAAY--APGVAPFMSDEAMG 143 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~--~P~~~pFfsDEa~~ 143 (219)
.+++.|++||||||-||.+||... .| .+| .++-+..
T Consensus 110 ~~~~~L~~lpGIG~~TA~~il~~a~g~~-~~~-vD~~v~R 147 (226)
T 1orn_A 110 RDRDELMKLPGVGRKTANVVVSVAFGVP-AIA-VDTHVER 147 (226)
T ss_dssp SCHHHHTTSTTCCHHHHHHHHHHHHCCC-CCC-CCHHHHH
T ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCc-eee-eCHHHHH
Confidence 468899999999999999999874 44 333 5555544
No 17
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=93.25 E-value=0.08 Score=44.70 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=26.1
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHH
Q 027775 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAM 142 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~ 142 (219)
.+++.|++||||||-||.+||....-.. .|..|--.
T Consensus 106 ~~~~~L~~lpGIG~~TA~~il~~a~~~~-~~~vD~~v 141 (225)
T 1kg2_A 106 ETFEEVAALPGVGRSTAGAILSLSLGKH-FPILDGNV 141 (225)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCS-CCCCCHHH
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHhCCCC-cceeCHHH
Confidence 4688999999999999999998743222 23455443
No 18
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=92.59 E-value=0.1 Score=46.93 Aligned_cols=38 Identities=34% Similarity=0.410 Sum_probs=27.6
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHH
Q 027775 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMG 143 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~ 143 (219)
.+++.|++|+||||-||.+||....-..++..+.-+..
T Consensus 115 ~~~~~L~~l~GIG~~tA~~il~~~~~~~~~~vD~~v~R 152 (369)
T 3fsp_A 115 DDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMR 152 (369)
T ss_dssp CSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_pred hHHHHHhcCCCcCHHHHHHHHHHHCCCCcccccHHHHH
Confidence 46889999999999999999998643333434444443
No 19
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=92.01 E-value=0.15 Score=45.34 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=25.5
Q ss_pred HHHHhhc-cCCCChHHHHHHHHhhcCCCCCcccHHHH
Q 027775 107 AVSELTV-LKGVGPATASAVLAAYAPGVAPFMSDEAM 142 (219)
Q Consensus 107 al~~L~~-LkGVGPATASaiLa~~~P~~~pFfsDEa~ 142 (219)
.++.|.+ |+||||-||.+||....-.. .|..|--.
T Consensus 126 ~~~~Ll~~LpGIG~kTA~~iL~~a~g~p-~~~VDt~V 161 (287)
T 3n5n_X 126 TAETLQQLLPGVGRYTAGAIASIAFGQA-TGVVDGNV 161 (287)
T ss_dssp SHHHHHHHSTTCCHHHHHHHHHHHSCCC-CCCCCHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHhcCCC-CccccHHH
Confidence 5788887 99999999999999854332 23445433
No 20
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=91.18 E-value=0.055 Score=40.96 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=30.2
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHHHhcC
Q 027775 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g 147 (219)
+..+.|+.|+||||++|..|+. .-||-|-|-+.-+.|
T Consensus 23 As~~eL~~lpGIG~~~A~~IV~-----~GpF~s~edL~~V~G 59 (97)
T 3arc_U 23 TNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPG 59 (97)
T ss_dssp SCGGGGGGSTTCTTHHHHHHHH-----HCCCSSGGGGGGCTT
T ss_pred CCHHHHhHCCCCCHHHHHHHHH-----cCCCCCHHHHHhccC
Confidence 4567899999999999999999 248888777766655
No 21
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=90.73 E-value=0.063 Score=43.15 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=30.3
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHHHhcCC
Q 027775 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALGH 148 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g~ 148 (219)
+..+.|+.|+||||++|.+|+. +.||-|-|=+.-+.|-
T Consensus 60 A~~~eL~~LpGiGp~~A~~II~-----~GpF~svedL~~V~GI 97 (134)
T 1s5l_U 60 TNIAAFIQYRGLYPTLAKLIVK-----NAPYESVEDVLNIPGL 97 (134)
T ss_dssp SCGGGGGGSTTCTHHHHHHHHH-----TCCCSSGGGGGGCTTC
T ss_pred cCHHHHHHCCCCCHHHHHHHHH-----cCCCCCHHHHHhCCCC
Confidence 4577899999999999999993 4578887777667663
No 22
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=89.17 E-value=0.21 Score=34.92 Aligned_cols=36 Identities=28% Similarity=0.522 Sum_probs=26.6
Q ss_pred HHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHHHhcC
Q 027775 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALG 147 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g 147 (219)
....|..++||||.+|..|+... +|-+-+-+..+.|
T Consensus 25 ~~~~L~~ipGIG~~~A~~Il~~r-----~~~s~~eL~~v~G 60 (75)
T 2duy_A 25 SLEELMALPGIGPVLARRIVEGR-----PYARVEDLLKVKG 60 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHTC-----CCSSGGGGGGSTT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHc-----ccCCHHHHHhCCC
Confidence 45678899999999999999964 5555554544544
No 23
>2i5h_A Hypothetical protein AF1531; PFAM:DUF655, PSI-2, structural genomics, protein structure initiative; 1.74A {Archaeoglobus fulgidus} SCOP: e.71.1.1
Probab=87.52 E-value=0.13 Score=43.95 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=41.1
Q ss_pred hHHHhhhCCHHHHHHHHHHHHhhCccHHHHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHHH-hcC
Q 027775 78 LLDFVSSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGA-ALG 147 (219)
Q Consensus 78 L~~lV~sN~~~~V~~~t~~Af~~l~d~~~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~-~~g 147 (219)
+.+.|..|....|. . |+....+.+.+..|..|+||||++|-+|+.--.- -||-|=|-+.. +.|
T Consensus 106 v~~iV~~~E~~fv~-f----~n~a~pITA~~~eL~~LpGIG~k~A~~IIeyRe~--G~F~s~eDL~~RV~G 169 (205)
T 2i5h_A 106 IEHIIKQDEKKYVD-F----FNKADSITTRMHQLELLPGVGKKMMWAIIEERKK--RPFESFEDIAQRVKG 169 (205)
T ss_dssp HHHHHHTTHHHHHH-H----HC--CCBCSSSBGGGGSTTCCHHHHHHHHHHHHH--SCCCSHHHHHHHSTT
T ss_pred HHHHHHhchhhhhh-h----ccccCCccCCHHHHhcCCCcCHHHHHHHHHHHhc--CCCCCHHHHHHhcCC
Confidence 34455555444443 2 3322334666778999999999999999997544 48988666643 655
No 24
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=86.44 E-value=1.3 Score=31.90 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=27.2
Q ss_pred hhCCHHHHHHHHHHHHhhCccHHHHHHHhhccCCCChHHHHHHHHhh
Q 027775 83 SSLDDSSVKSASEKAFKSLPDLTKAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 83 ~sN~~~~V~~~t~~Af~~l~d~~~al~~L~~LkGVGPATASaiLa~~ 129 (219)
++++++.++.-...-+ ....+..|+.++||||.+|-.||..+
T Consensus 11 ~~~~~~~~~~~~~~~~-----~~~~~~~L~~IpgIG~~~A~~Ll~~f 52 (91)
T 2a1j_B 11 SQDPADLLMEKLEQDF-----VSRVTECLTTVKSVNKTDSQTLLTTF 52 (91)
T ss_dssp --CCSHHHHHHHHHHH-----HHHHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHhhhccCCH-----HHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 4556666655544433 23456678889999999999888764
No 25
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=86.20 E-value=0.51 Score=32.16 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=19.6
Q ss_pred HHHHhhccCCCChHHHHHHHHhhc
Q 027775 107 AVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~ 130 (219)
..+.|+.++||||.+|..|.+...
T Consensus 44 ~~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 44 SVAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHhcCCCCCHHHHHHHHHHHh
Confidence 356788999999999999988763
No 26
>2edu_A Kinesin-like protein KIF22; kinesin-like DNA binding domain, helix turn helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.2.7
Probab=83.88 E-value=0.32 Score=35.84 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=32.7
Q ss_pred HHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHHHhcCCCCCCCHHHHHHHH
Q 027775 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAALGHSKDYSLRQYLLFA 161 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~~g~~~kYt~keY~~~~ 161 (219)
....|..++||||.+|..|+....... +|-+-+-+..+.| .+.+-+..++
T Consensus 38 ~~~~L~~ipGIG~~~A~~Il~~r~~~g-~f~s~edL~~v~G----ig~k~~~~l~ 87 (98)
T 2edu_A 38 SARDLRSLQRIGPKKAQLIVGWRELHG-PFSQVEDLERVEG----ITGKQMESFL 87 (98)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHHHHHC-CCSSGGGGGGSTT----CCHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHHHhcC-CcCCHHHHHhCCC----CCHHHHHHHH
Confidence 356788999999999999999864322 5655444444444 3444555544
No 27
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=83.41 E-value=0.63 Score=39.60 Aligned_cols=29 Identities=31% Similarity=0.321 Sum_probs=21.5
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHhhcCC
Q 027775 104 LTKAVSELTVLKGVGPATASAVLAAYAPG 132 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~~~P~ 132 (219)
.+.-+..|.+++||||.||-+||+.+.|+
T Consensus 83 Er~lf~~L~sv~GIGpk~A~~Ils~~~~~ 111 (212)
T 2ztd_A 83 TRDLFLTLLSVSGVGPRLAMAALAVHDAP 111 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHHSCHH
T ss_pred HHHHHHHhcCcCCcCHHHHHHHHHhCCHH
Confidence 34455667788888888888888876664
No 28
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=81.62 E-value=1.1 Score=36.28 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=34.6
Q ss_pred HHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHHHh---cCCCCCCCH
Q 027775 107 AVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA---LGHSKDYSL 154 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~~---~g~~~kYt~ 154 (219)
..-+||.++|||+.||-.||... +|+ .+=-.+|+-+..+ ...+.+|.+
T Consensus 28 v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~i 81 (146)
T 3u5c_S 28 IVYALTTIKGVGRRYSNLVCKKADVDLHKRAGELTQEELERIVQIMQNPTHYKI 81 (146)
T ss_dssp TTTTGGGSTTCCHHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHHTCTTTTTC
T ss_pred hHhhHhhhcCCCHHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHHHhhcccCc
Confidence 44568999999999999999985 565 5556777766543 345556655
No 29
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=81.33 E-value=0.85 Score=38.05 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=21.6
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhhcC
Q 027775 105 TKAVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P 131 (219)
+.-+..|..++||||.||-+||+.+.|
T Consensus 68 k~~f~~L~~v~GIGpk~A~~iL~~f~~ 94 (191)
T 1ixr_A 68 LALFELLLSVSGVGPKVALALLSALPP 94 (191)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHhCCh
Confidence 444567888999999999999998665
No 30
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=78.84 E-value=0.71 Score=31.67 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=18.8
Q ss_pred HHHhhccCCCChHHHHHHHHh
Q 027775 108 VSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~ 128 (219)
...|..++||||.++-.+|.-
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~ 23 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHH 23 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHH
T ss_pred HhHHHcCCCCCHHHHHHHHHH
Confidence 467899999999999999985
No 31
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=78.29 E-value=1.9 Score=29.18 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.3
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh
Q 027775 106 KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~ 129 (219)
.....|+.++||||.+|..|+..+
T Consensus 11 ~~~~~L~~i~giG~~~a~~Ll~~f 34 (75)
T 1x2i_A 11 RQRLIVEGLPHVSATLARRLLKHF 34 (75)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHc
Confidence 345678999999999999999864
No 32
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=78.15 E-value=1.8 Score=30.89 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.0
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh
Q 027775 106 KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~ 129 (219)
.....|+.++||||.+|-.|+..+
T Consensus 16 ~~~~~L~~IpgIG~~~A~~Ll~~f 39 (89)
T 1z00_A 16 RVTECLTTVKSVNKTDSQTLLTTF 39 (89)
T ss_dssp HHHHHHTTSSSCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHC
Confidence 356678899999999999999864
No 33
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.95 E-value=3 Score=33.83 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=35.1
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHHHh---cCCCCCCCHH
Q 027775 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA---LGHSKDYSLR 155 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~~---~g~~~kYt~k 155 (219)
+...-+||.++|||+.||-.||... +|+ .+=-.+|+-...+ ...+.+|.++
T Consensus 24 k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip 80 (152)
T 3iz6_M 24 QKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVP 80 (152)
T ss_dssp SBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCC
T ss_pred cEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcc
Confidence 4455678999999999999999985 554 5556777655533 3344455543
No 34
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=77.77 E-value=1.2 Score=37.47 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=20.8
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhhcC
Q 027775 105 TKAVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P 131 (219)
+.-+..|..++||||.+|-+||+.+.|
T Consensus 69 k~~f~~L~~V~GIGpk~A~~iL~~f~~ 95 (203)
T 1cuk_A 69 RTLFKELIKTNGVGPKLALAILSGMSA 95 (203)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHSCH
T ss_pred HHHHHHHhcCCCcCHHHHHHHHhhCCh
Confidence 344556778999999999999987655
No 35
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=77.69 E-value=1.6 Score=30.52 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=19.8
Q ss_pred HHHHhhccCCCChHHHHHHHHhh
Q 027775 107 AVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~ 129 (219)
..+.|+.++|||+.+|..|.+..
T Consensus 54 ~~eeL~~i~GIG~~~a~~I~~~~ 76 (78)
T 1kft_A 54 SVEEIAKVPGISQGLAEKIFWSL 76 (78)
T ss_dssp CHHHHTTSSSTTSHHHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHHHHH
Confidence 36789999999999999998865
No 36
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=76.22 E-value=1.8 Score=30.89 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.8
Q ss_pred HHHHhhccCCCChHHHHHHHHhhc
Q 027775 107 AVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~ 130 (219)
..+.|+.++|||+.+|..|.+...
T Consensus 49 ~~~eL~~i~GIG~~~a~~I~~~l~ 72 (89)
T 1z00_A 49 SREDLALCPGLGPQKARRLFDVLH 72 (89)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999864
No 37
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=76.19 E-value=3.1 Score=32.17 Aligned_cols=39 Identities=33% Similarity=0.398 Sum_probs=29.5
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHHH
Q 027775 106 KAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGA 144 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~ 144 (219)
...-+|+.++|||+.+|..||... +|+ .+--.+|+-+..
T Consensus 13 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~ 54 (114)
T 3r8n_M 13 HAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDT 54 (114)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHH
T ss_pred EeHhhHhhhcCcCHHHHHHHHHHcCcCcccCcccCCHHHHHH
Confidence 345578999999999999999985 565 555677775543
No 38
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=75.16 E-value=1.9 Score=31.09 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.0
Q ss_pred HHHhhccCCCChHHHHHHHHhh
Q 027775 108 VSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (219)
.+.|++++|||+.+|..|+...
T Consensus 63 ~~eL~~i~GIG~~~a~~I~~~l 84 (91)
T 2a1j_B 63 REDLALCPGLGPQKARRLFDVL 84 (91)
T ss_dssp HHHHHTSSSCCSHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHH
Confidence 5679999999999999999886
No 39
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=73.60 E-value=1.5 Score=30.68 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.2
Q ss_pred HHhhccCCCChHHHHHHHHhh
Q 027775 109 SELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 109 ~~L~~LkGVGPATASaiLa~~ 129 (219)
..|..++||||.+|-.|+..+
T Consensus 24 ~~L~~I~gIG~~~A~~Ll~~f 44 (78)
T 1kft_A 24 SSLETIEGVGPKRRQMLLKYM 44 (78)
T ss_dssp CGGGGCTTCSSSHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHc
Confidence 357889999999999999874
No 40
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=69.68 E-value=3.2 Score=30.20 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=20.6
Q ss_pred HHHHHhhccCCCChHHHHHHHHh
Q 027775 106 KAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~ 128 (219)
.+...|..|+||||.+.-.||.-
T Consensus 15 ~~~s~L~~IpGIG~kr~~~LL~~ 37 (84)
T 1z00_B 15 GPQDFLLKMPGVNAKNCRSLMHH 37 (84)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHH
T ss_pred cHHHHHHhCCCCCHHHHHHHHHH
Confidence 46788999999999999999985
No 41
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.92 E-value=4.8 Score=32.52 Aligned_cols=39 Identities=28% Similarity=0.343 Sum_probs=29.6
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHHH
Q 027775 106 KAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGA 144 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~ 144 (219)
...-+||.++|||+.+|-.||... +|+ .+=-.+||-+..
T Consensus 20 ~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~ 61 (148)
T 3j20_O 20 QLRWALTAIKGIGINFATMVCRVAGLDPFMKAGYLTDEQVKK 61 (148)
T ss_dssp CHHHHHHHSTTCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHH
T ss_pred EehhhhhhccCcCHHHHHHHHHHhCCCCCceeccCCHHHHHH
Confidence 345578999999999999999985 565 556677775543
No 42
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=68.54 E-value=5.4 Score=32.45 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=30.1
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHHH
Q 027775 105 TKAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGA 144 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~ 144 (219)
+...-+||.++|||+.||-.||... +|+ .+--.+|+-+..
T Consensus 26 k~v~~aLt~I~GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~ 68 (155)
T 2xzm_M 26 RITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNK 68 (155)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHH
T ss_pred CEEEEeeecccccCHHHHHHHHHHcCCCcccccccCCHHHHHH
Confidence 3345578999999999999999985 555 555677776653
No 43
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=68.12 E-value=2.7 Score=35.95 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=19.1
Q ss_pred HHHHHHHhhccCCCChHHHHHH
Q 027775 104 LTKAVSELTVLKGVGPATASAV 125 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASai 125 (219)
+...++.|.+||||||-||.=+
T Consensus 21 l~~LI~~l~~LPGIG~KsA~Rl 42 (212)
T 3vdp_A 21 VAKLIEELSKLPGIGPKTAQRL 42 (212)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHH
Confidence 6678999999999999998754
No 44
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=66.56 E-value=5.7 Score=35.46 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=37.9
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHH-------H-hcC------CCCCCCHHHHHHHHHHHHHHHHH
Q 027775 105 TKAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMG-------A-ALG------HSKDYSLRQYLLFADKLQAKAKE 170 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~-------~-~~g------~~~kYt~keY~~~~~~l~~~~~~ 170 (219)
..+|..|++++||||.||..+-.-.-- . + |+.-. . ..| ........+-..+.+.+.+.++.
T Consensus 94 ~~~l~~l~~V~GiGpk~a~~l~~~Gi~-t---l-edL~~a~~~l~~~~~~gl~~~~~~~~ripr~ea~~ia~~i~~~l~~ 168 (335)
T 2fmp_A 94 SSSINFLTRVSGIGPSAARKFVDEGIK-T---L-EDLRKNEDKLNHHQRIGLKYFGDFEKRIPREEMLQMQDIVLNEVKK 168 (335)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHTTCC-S---H-HHHHTCGGGSCHHHHHHHHTHHHHTSCEEHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhCCCCCCHHHHHHHHHcCCC-C---H-HHHHHhhhhhHHHHHHHHHHHHHhcCcEEHHHHHHHHHHHHHHHHh
Confidence 468999999999999999988543110 0 1 11111 0 011 13355666666777777776666
Q ss_pred hc
Q 027775 171 LV 172 (219)
Q Consensus 171 L~ 172 (219)
+.
T Consensus 169 ~~ 170 (335)
T 2fmp_A 169 VD 170 (335)
T ss_dssp HC
T ss_pred cC
Confidence 54
No 45
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=66.37 E-value=2 Score=38.44 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=17.1
Q ss_pred HHHhhccCCCChHHHHHHHHhhc
Q 027775 108 VSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~ 130 (219)
+..|+.|||||+.||..|--...
T Consensus 56 ~~~l~~lpGIG~~~A~kI~E~l~ 78 (335)
T 2bcq_A 56 YQEACSIPGIGKRMAEKIIEILE 78 (335)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHHHH
Confidence 44578888888888888877643
No 46
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=65.23 E-value=2.3 Score=38.07 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=23.7
Q ss_pred HhhCccHHHHHHHhhccCCCChHHHHHHHHhhc
Q 027775 98 FKSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 98 f~~l~d~~~al~~L~~LkGVGPATASaiLa~~~ 130 (219)
+..++..-..+..|+.|+|||+.||..|--...
T Consensus 46 l~~l~~~i~~~~~l~~LpGIG~~~A~kI~E~l~ 78 (335)
T 2fmp_A 46 IAKYPHKIKSGAEAKKLPGVGTKIAEKIDEFLA 78 (335)
T ss_dssp HHHCSSCCCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred HHhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 334443223444689999999999999988865
No 47
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=63.91 E-value=5.1 Score=31.56 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=29.3
Q ss_pred HHHHHhhccCCCChHHHHHHHHhh--cCC-CCCcccHHHHHHh
Q 027775 106 KAVSELTVLKGVGPATASAVLAAY--APG-VAPFMSDEAMGAA 145 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~--~P~-~~pFfsDEa~~~~ 145 (219)
...-.|+.+.|||+.+|..||... +|+ .+--.+|+-+..+
T Consensus 14 ~v~~aLt~I~GIG~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l 56 (126)
T 2vqe_M 14 RVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRL 56 (126)
T ss_dssp BHHHHHTTSSSCCSHHHHHHTTTTTCCTTSBGGGCCHHHHHHH
T ss_pred EeeeehhccccccHHHHHHHHHHcCCCcccccCcCCHHHHHHH
Confidence 344578999999999999999984 555 4455677655533
No 48
>3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus}
Probab=62.16 E-value=15 Score=33.20 Aligned_cols=70 Identities=19% Similarity=0.079 Sum_probs=45.1
Q ss_pred ccCCCChHHHHHHHHhh----------cCCCCCcccHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHHHhcccCC
Q 027775 113 VLKGVGPATASAVLAAY----------APGVAPFMSDEAMGAALGH------SKDYSLRQYLLFADKLQAKAKELVSEEN 176 (219)
Q Consensus 113 ~LkGVGPATASaiLa~~----------~P~~~pFfsDEa~~~~~g~------~~kYt~keY~~~~~~l~~~~~~L~~~~~ 176 (219)
.++||||-||.-+|.-+ +...+||=.+++....+.+ .+++..++...+.+-+++ +.
T Consensus 255 GVpGIG~KtA~kLl~~~gsle~il~~~~~~~~~~~~~~~~~~f~~p~v~~~~~~~w~~pd~~~l~~fl~~---~~----- 326 (363)
T 3ory_A 255 GFEGIGPKKALQLVKAYGGIEKIPKPILKSPIEVDVIAIKKYFLQPQVTDNYRIEWHTPDPDAVKRILVD---EH----- 326 (363)
T ss_dssp CSTTCCHHHHHHHHHHHTSSTTSCGGGCCCSSCCCHHHHHHHHHSCCCCSCCCCCCCCCCHHHHHHHHTT---TT-----
T ss_pred CCCCcCHHHHHHHHHHcCCHHHHHHhcccccCCCCHHHHHHHhcCCCCCCCCCCCCCCCCHHHHHHHHHh---cc-----
Confidence 46799999999999864 2224565456777665542 346666666665554432 22
Q ss_pred CCCHHHHHHHHHHH
Q 027775 177 CFTPFDVERALWSS 190 (219)
Q Consensus 177 ~~s~~~VEkalws~ 190 (219)
+||..+|+.++=-+
T Consensus 327 ~f~~~rv~~~~~~l 340 (363)
T 3ory_A 327 DFSIDRVSTALERY 340 (363)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 69999888876443
No 49
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=61.04 E-value=4.7 Score=38.38 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=21.7
Q ss_pred HHHHHHhhccCCCChHHHHHHHHh
Q 027775 105 TKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (219)
...+..|++++||||.||-.|++.
T Consensus 93 ~~~~~~L~~v~GVGpk~A~~i~~~ 116 (578)
T 2w9m_A 93 PPGLLDLLGVRGLGPKKIRSLWLA 116 (578)
T ss_dssp CHHHHHHTTSTTCCHHHHHHHHHT
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHc
Confidence 457889999999999999999985
No 50
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=60.33 E-value=5.3 Score=36.09 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.4
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHh
Q 027775 104 LTKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~ 128 (219)
+..+|..|++++||||.||..+-.-
T Consensus 97 ~~~~l~~l~~I~GvG~kta~~l~~~ 121 (360)
T 2ihm_A 97 RYQTMKLFTQVFGVGVKTANRWYQE 121 (360)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred chHHHHHHhCCCCCCHHHHHHHHHc
Confidence 5568999999999999999988543
No 51
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=60.11 E-value=4.7 Score=34.85 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=18.7
Q ss_pred HHHHHHHhhccCCCChHHHHHH
Q 027775 104 LTKAVSELTVLKGVGPATASAV 125 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASai 125 (219)
+..-++.|.+||||||-||.=+
T Consensus 7 l~~LI~~l~~LPGIG~KSA~Rl 28 (228)
T 1vdd_A 7 LVSLIRELSRLPGIGPKSAQRL 28 (228)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHH
T ss_pred HHHHHHHHhHCCCCCHHHHHHH
Confidence 4667899999999999999754
No 52
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=58.75 E-value=2 Score=37.06 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=0.0
Q ss_pred HHHHHhhccCCCChHHHHHHHHh
Q 027775 106 KAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~ 128 (219)
+....|..|+||||.+|-.|+..
T Consensus 12 a~~~~L~~IpGIGpk~a~~Ll~~ 34 (241)
T 1vq8_Y 12 EEYTELTDISGVGPSKAESLREA 34 (241)
T ss_dssp -----------------------
T ss_pred cchhHHhcCCCCCHHHHHHHHHc
Confidence 34557888999999999999985
No 53
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Probab=57.42 E-value=5.9 Score=37.59 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.4
Q ss_pred HHHHHHhhccCCCChHHHHHHHHh
Q 027775 105 TKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~ 128 (219)
...+..|+++.||||.||-+|++.
T Consensus 89 ~~~~~~l~~v~GvGpk~A~~~~~~ 112 (575)
T 3b0x_A 89 PRGVLEVMEVPGVGPKTARLLYEG 112 (575)
T ss_dssp CHHHHHHHTSTTTCHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcCHHHHHHHHHh
Confidence 356889999999999999999986
No 54
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=56.47 E-value=21 Score=30.04 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.0
Q ss_pred HHHhhccCCCChHHHHHHHHhhcCC
Q 027775 108 VSELTVLKGVGPATASAVLAAYAPG 132 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~ 132 (219)
.+.|++++|||+-||--|..-+...
T Consensus 122 ~~~L~~vpGIG~KtA~rIi~elk~k 146 (212)
T 2ztd_A 122 VAALTRVPGIGKRGAERMVLELRDK 146 (212)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHTTT
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999988776543
No 55
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=55.96 E-value=6.8 Score=35.68 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=21.4
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHh
Q 027775 104 LTKAVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 104 ~~~al~~L~~LkGVGPATASaiLa~ 128 (219)
+..+|..|++++||||.||..+-.-
T Consensus 116 ~~~~l~~l~~I~GvGpk~a~~ly~~ 140 (381)
T 1jms_A 116 RYKSFKLFTSVFGVGLKTAEKWFRM 140 (381)
T ss_dssp HHHHHHHHHTSTTCCHHHHHHHHHT
T ss_pred chhHHHHHHccCCCCHHHHHHHHHc
Confidence 4568999999999999999988543
No 56
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=53.98 E-value=6.5 Score=35.11 Aligned_cols=61 Identities=13% Similarity=0.143 Sum_probs=37.3
Q ss_pred HHHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHHHHh-------cC------CCCCCCHHHHHHHHHHHHHHHHHhc
Q 027775 107 AVSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAMGAA-------LG------HSKDYSLRQYLLFADKLQAKAKELV 172 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~~~~-------~g------~~~kYt~keY~~~~~~l~~~~~~L~ 172 (219)
.++.|++++||||.||..+-.-.-- . + |+.-..+ .| ........+-..+.+.+.+.++.+.
T Consensus 94 ~l~ll~~v~GiG~k~a~~l~~~Gi~-t---l-edL~~a~~~k~~q~Igl~~~~~~~~ripr~ea~~ia~~i~~~l~~~~ 167 (335)
T 2bcq_A 94 VLELFSNIWGAGTKTAQMWYQQGFR-S---L-EDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFN 167 (335)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHTTCC-S---H-HHHHHHCCCCHHHHHHHHTTTGGGCCEEHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCcCHHHHHHHHHcCCC-C---H-HHHHHHhcccHHHHHHHHHHHHhcCCEEHHHHHHHHHHHHHHHHhcC
Confidence 6788999999999999988543110 1 1 1221111 02 1335567777777777777776654
No 57
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=53.05 E-value=21 Score=26.32 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=31.7
Q ss_pred HHHhhccCCCChHHHHHHHHhhcCCCCCc---ccHHHHHHhcCCCCCCCHHHHHHHHHHH
Q 027775 108 VSELTVLKGVGPATASAVLAAYAPGVAPF---MSDEAMGAALGHSKDYSLRQYLLFADKL 164 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~~~pF---fsDEa~~~~~g~~~kYt~keY~~~~~~l 164 (219)
|..|+.||+|||+++-.+-.+.-.+.--+ =++++|.-++-...+=++.-|-.+..++
T Consensus 3 ~~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c~~~L~aL~gAi 62 (93)
T 3bqs_A 3 LANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCMSELYALEGAV 62 (93)
T ss_dssp CSCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred hHHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 34588999999999999888753221111 1344555554333334444444443333
No 58
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=52.54 E-value=3.4 Score=37.38 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=22.8
Q ss_pred hhCccHHHHHHHhhccCCCChHHHHHHHHhhc
Q 027775 99 KSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 99 ~~l~d~~~al~~L~~LkGVGPATASaiLa~~~ 130 (219)
..++..-..+..|+.|+|||+.||..|--...
T Consensus 51 ~~l~~~i~~~~~l~~lpGIG~~~A~kI~E~l~ 82 (360)
T 2ihm_A 51 KSLPCPVASLSQLHGLPYFGEHSTRVIQELLE 82 (360)
T ss_dssp HHCSSCCCSGGGGTTCTTCCHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34443222344599999999999999988754
No 59
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=51.23 E-value=3.9 Score=30.44 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=19.3
Q ss_pred HHHHhhccCCCChHHHHHHHHhh
Q 027775 107 AVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~ 129 (219)
+|..|+.||+|||+++-.+-.+.
T Consensus 2 sm~~L~dLPNig~~~e~~L~~~G 24 (93)
T 3mab_A 2 SLANLSELPNIGKVLEQDLIKAG 24 (93)
T ss_dssp -CCCGGGSTTCCHHHHHHHHHTT
T ss_pred CHHHHhhCCCCCHHHHHHHHHcC
Confidence 35678999999999999988875
No 60
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=49.16 E-value=10 Score=31.14 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.1
Q ss_pred HHHhhccCCCChHHHHHHHHhh
Q 027775 108 VSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (219)
...|..++||||.+|-.|+..+
T Consensus 161 ~~~L~~i~gVg~~~a~~Ll~~f 182 (219)
T 2bgw_A 161 LYILQSFPGIGRRTAERILERF 182 (219)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHc
Confidence 4468899999999999999974
No 61
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=49.13 E-value=6.5 Score=29.35 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=16.1
Q ss_pred HhhccCCCChHHHHHHHHh
Q 027775 110 ELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 110 ~L~~LkGVGPATASaiLa~ 128 (219)
.+++|+||||+++--+-.-
T Consensus 19 ~V~evpGIG~~~~~~L~~~ 37 (89)
T 1ci4_A 19 PVGSLAGIGEVLGKKLEER 37 (89)
T ss_dssp CGGGSTTCCHHHHHHHHHT
T ss_pred CcccCCCcCHHHHHHHHHc
Confidence 4789999999999887764
No 62
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=48.44 E-value=1.6 Score=30.70 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhCccHH-HHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHH
Q 027775 87 DSSVKSASEKAFKSLPDLT-KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDE 140 (219)
Q Consensus 87 ~~~V~~~t~~Af~~l~d~~-~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDE 140 (219)
+..+.+....+|..+.|+. .+.+.|+.++|++.++|..|.....- .|+|.++
T Consensus 17 ~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~--~~w~~~~ 69 (70)
T 1wcn_A 17 RDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN--ICWFGDE 69 (70)
T ss_dssp HHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH--HHTTCTT
T ss_pred HHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH--ccCcccc
Confidence 3334444444444333332 35778888888888888887776532 3566543
No 63
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=44.63 E-value=5.4 Score=36.38 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=22.8
Q ss_pred hhCccHHHHHHHhhccCCCChHHHHHHHHhhc
Q 027775 99 KSLPDLTKAVSELTVLKGVGPATASAVLAAYA 130 (219)
Q Consensus 99 ~~l~d~~~al~~L~~LkGVGPATASaiLa~~~ 130 (219)
..++..-..+..|++|+|||+.||..|--...
T Consensus 70 ~~l~~~i~~~~~l~~lpGIG~~ia~kI~E~l~ 101 (381)
T 1jms_A 70 KSLPFPITSMKDTEGIPCLGDKVKSIIEGIIE 101 (381)
T ss_dssp HTCSSCCCSGGGGTTCSSCCHHHHHHHHHHHH
T ss_pred HhCCccccCHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34443223344599999999999999987754
No 64
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=44.48 E-value=12 Score=32.01 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=18.8
Q ss_pred HHHhhccCCCChHHHHHHHHhh
Q 027775 108 VSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (219)
-..|..++||||.||-.+|.-+
T Consensus 167 ~s~LdgIpGIG~k~ak~Ll~~F 188 (220)
T 2nrt_A 167 RSVLDNVPGIGPIRKKKLIEHF 188 (220)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHH
T ss_pred cccccCCCCcCHHHHHHHHHHc
Confidence 3567899999999999999863
No 65
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=43.57 E-value=7.3 Score=28.48 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=19.5
Q ss_pred hhCccHHHHHHHhhccCCCChHHHHHHHH
Q 027775 99 KSLPDLTKAVSELTVLKGVGPATASAVLA 127 (219)
Q Consensus 99 ~~l~d~~~al~~L~~LkGVGPATASaiLa 127 (219)
+..|..-...+.+..|+||||-++.-|=.
T Consensus 48 k~~P~~i~s~~e~~~L~giG~ki~~~L~e 76 (87)
T 2kp7_A 48 QRYPLPLRSGKEAKILQHFGDRLCRMLDE 76 (87)
T ss_dssp HHCCSCCCSHHHHHTCTTTCHHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHhhcccHHHHHHHHH
Confidence 33443333455667899999999987643
No 66
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=40.54 E-value=23 Score=36.57 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=25.1
Q ss_pred HHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHH
Q 027775 108 VSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAM 142 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~ 142 (219)
-..|.-+.||||..|.+|+....-.+-+|-|-+-.
T Consensus 716 ~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L 750 (1030)
T 3psf_A 716 ASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQL 750 (1030)
T ss_dssp HTTGGGSTTCCHHHHHHHHHHHHHTCSCCCCTTHH
T ss_pred HHHHhhCCCCCHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 67788999999999999998652223355544433
No 67
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=40.25 E-value=14 Score=35.39 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.9
Q ss_pred HHHhhccCCCChHHHHHHHHh
Q 027775 108 VSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~ 128 (219)
...|+.++||||+||.-+|--
T Consensus 467 eamLtAIaGIGp~tAeRLLEk 487 (685)
T 4gfj_A 467 YASLISIRGIDRERAERLLKK 487 (685)
T ss_dssp HHHHHTSTTCCHHHHHHHHHH
T ss_pred eeeeeccCCCCHHHHHHHHHH
Confidence 578999999999999999975
No 68
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=38.93 E-value=17 Score=30.11 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=20.8
Q ss_pred HHHHhhccCCCChHHHHHHHHhhcC
Q 027775 107 AVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P 131 (219)
-.+.|++++|||+.||--|..-+-.
T Consensus 105 d~~~L~~vpGIG~K~A~rI~~~lk~ 129 (191)
T 1ixr_A 105 DARLLTSASGVGRRLAERIALELKG 129 (191)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHHHTT
T ss_pred CHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999876543
No 69
>3oao_A Uncharacterized protein from DUF2059 family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.72A {Pseudomonas aeruginosa} PDB: 2x3o_A
Probab=37.13 E-value=27 Score=27.89 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCcchHHHhhhCCH--HHHHHHHHHHH-hhCccHHHHHHHhh-ccCCCChH
Q 027775 54 PHINTTELSKLVRWKLTRGKWRPRLLDFVSSLDD--SSVKSASEKAF-KSLPDLTKAVSELT-VLKGVGPA 120 (219)
Q Consensus 54 ~~ltk~EL~~Lv~WKL~rGkfRP~L~~lV~sN~~--~~V~~~t~~Af-~~l~d~~~al~~L~-~LkGVGPA 120 (219)
.|+|.+||..|+.+=-+ |.-.+++..+|. .....+++.-. ...|.+.+.+..+. +|.++|||
T Consensus 78 ~~fT~~El~~l~~FY~s-----p~Gkk~~~~~p~~~~~~~~~~q~~~~~~~p~~~~~~~em~kel~~~~~~ 143 (147)
T 3oao_A 78 TNFTESELKDLNAFYQS-----PLGKKVLEKMPRLTAESAQLTQAKLQGAVEPVNKLMADMDKELGVAAPA 143 (147)
T ss_dssp HHSCHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHTTCC---
T ss_pred HHCCHHHHHHHHHHHCC-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcC
Confidence 59999999999998654 555577777764 22222333222 23455666666666 69999886
No 70
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=37.10 E-value=18 Score=30.10 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.6
Q ss_pred HHHHhhccCCCChHHHHHHHHhh
Q 027775 107 AVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~ 129 (219)
-.+.|++++|||+-||--|..-+
T Consensus 106 d~~~L~~vpGIG~K~A~rI~~el 128 (203)
T 1cuk_A 106 EVGALVKLPGIGKKTAERLIVEM 128 (203)
T ss_dssp CHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 46789999999999999987654
No 71
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=34.98 E-value=25 Score=36.89 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=25.1
Q ss_pred HHHhhccCCCChHHHHHHHHhhcCCCCCcccHHHH
Q 027775 108 VSELTVLKGVGPATASAVLAAYAPGVAPFMSDEAM 142 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~~P~~~pFfsDEa~ 142 (219)
-..|.-+.|+||..|.+|+....-.+-+|-|-+-.
T Consensus 713 ~~lL~~v~GlGp~kA~~Iv~~r~~~~G~f~sr~~L 747 (1219)
T 3psi_A 713 ASALKYISGFGKRKAIDFLQSLQRLNEPLLARQQL 747 (1219)
T ss_dssp HTTGGGSTTCCHHHHHHHHHHHHHHCSCCCCTTHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 67888999999999999998652223355554433
No 72
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=33.04 E-value=9.1 Score=32.77 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=0.0
Q ss_pred HHHhhccCCCChHHHHHHHHhh
Q 027775 108 VSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 108 l~~L~~LkGVGPATASaiLa~~ 129 (219)
-..|..++||||.||-.||.-+
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~F 193 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNYF 193 (226)
T ss_dssp ----------------------
T ss_pred cccccccCCCCHHHHHHHHHHh
Confidence 3568899999999999999864
No 73
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=32.35 E-value=9.5 Score=37.22 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHH
Q 027775 55 HINTTELSKLVRW 67 (219)
Q Consensus 55 ~ltk~EL~~Lv~W 67 (219)
.||.++|..|=.|
T Consensus 487 ~L~~~~L~~l~~~ 499 (615)
T 3sgi_A 487 ALTERDLLRTDLF 499 (615)
T ss_dssp -------------
T ss_pred hCCHHHHhhcccc
Confidence 5677777777555
No 74
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=31.22 E-value=26 Score=26.76 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhCccHH-HHHHHhhccCCCChHHHHHHHHhh
Q 027775 87 DSSVKSASEKAFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 87 ~~~V~~~t~~Af~~l~d~~-~al~~L~~LkGVGPATASaiLa~~ 129 (219)
+..+++.-..+|..+.++. +.-+.|+.++|||+++|--|+.+.
T Consensus 35 ~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA 78 (114)
T 1b22_A 35 ANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA 78 (114)
T ss_dssp HHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHH
Confidence 5666666666676554432 346789999999999999999985
No 75
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=30.19 E-value=28 Score=28.39 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=19.7
Q ss_pred HHHHhhccCCCChHHHHHHHHhh
Q 027775 107 AVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~ 129 (219)
..+.|.+++|||+.+|..|...+
T Consensus 192 ~~e~L~~v~GiG~~~a~~i~~~~ 214 (219)
T 2bgw_A 192 SKAEISKVEGIGEKRAEEIKKIL 214 (219)
T ss_dssp CHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CHHHHhhCCCCCHHHHHHHHHHH
Confidence 35678999999999999998765
No 76
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=29.59 E-value=11 Score=32.32 Aligned_cols=33 Identities=30% Similarity=0.440 Sum_probs=0.0
Q ss_pred HHhhCccHH-HHHHHhhccCCCChHHHHHHHHhh
Q 027775 97 AFKSLPDLT-KAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 97 Af~~l~d~~-~al~~L~~LkGVGPATASaiLa~~ 129 (219)
.|..+.++. +....|+.++|||+.||.-|+...
T Consensus 35 gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l 68 (241)
T 1vq8_Y 35 GFESVEDVRGADQSALADVSGIGNALAARIKADV 68 (241)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHH
Confidence 444444443 346789999999999999998764
No 77
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=29.35 E-value=7.8 Score=31.30 Aligned_cols=25 Identities=16% Similarity=0.377 Sum_probs=20.7
Q ss_pred HHHHHHhhccCCCChHHHHHHHHhh
Q 027775 105 TKAVSELTVLKGVGPATASAVLAAY 129 (219)
Q Consensus 105 ~~al~~L~~LkGVGPATASaiLa~~ 129 (219)
+...-.|+.++|||+.+|..||...
T Consensus 58 K~v~~aLt~IyGIG~~~A~~I~~~~ 82 (145)
T 3bbn_M 58 KRVEYSLQYIHGIGRSRSRQILLDL 82 (145)
T ss_dssp SBTTTGGGGSTTCCSSTTTGGGTTT
T ss_pred CEEEEeeeeecCccHHHHHHHHHHc
Confidence 4445578999999999999999864
No 78
>1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A
Probab=26.98 E-value=26 Score=30.77 Aligned_cols=16 Identities=13% Similarity=0.578 Sum_probs=14.4
Q ss_pred cCCCChHHHHHHHHhh
Q 027775 114 LKGVGPATASAVLAAY 129 (219)
Q Consensus 114 LkGVGPATASaiLa~~ 129 (219)
++||||-||.-+|.-+
T Consensus 208 VpGIG~KTA~kLL~~~ 223 (290)
T 1exn_A 208 VEGIGAKRGYNIIREF 223 (290)
T ss_dssp CTTCCHHHHHHHHHHH
T ss_pred CCcCCHhHHHHHHHHc
Confidence 8889999999999865
No 79
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=26.54 E-value=26 Score=33.25 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhCccHHHHH--HHhhccCCCChHHHHHHHHh
Q 027775 88 SSVKSASEKAFKSLPDLTKAV--SELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 88 ~~V~~~t~~Af~~l~d~~~al--~~L~~LkGVGPATASaiLa~ 128 (219)
...+.+-..+|..+.|+..|+ ..|+.++|||+-||.-|+..
T Consensus 108 k~A~~i~~~G~~s~edL~~a~~~~~L~~~~GiG~Ktaq~I~~~ 150 (578)
T 2w9m_A 108 KKIRSLWLAGIDSLERLREAAESGELAGLKGFGAKSAATILEN 150 (578)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHTTTTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHhhCccccCCCCCHHHHHHHHHH
Confidence 344444443444445666664 37889999999999999654
No 80
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=24.59 E-value=41 Score=28.99 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.2
Q ss_pred HHHHhhccCCCChHHHHHHHHhhcC
Q 027775 107 AVSELTVLKGVGPATASAVLAAYAP 131 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~~~P 131 (219)
.+..|..++||+|..|.+|+.. .|
T Consensus 235 ~~~mL~~IpGVs~~~A~~I~~~-yp 258 (311)
T 2ziu_A 235 FARQLMQISGVSGDKAAAVLEH-YS 258 (311)
T ss_dssp HHHHHTTBTTCCHHHHHHHHHH-CS
T ss_pred HHHHHHhccCCCHHHHHHHHHH-CC
Confidence 5778999999999999999996 44
No 81
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=22.50 E-value=58 Score=31.44 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=16.6
Q ss_pred HHHHhhccCCCChHHHHHHHHh
Q 027775 107 AVSELTVLKGVGPATASAVLAA 128 (219)
Q Consensus 107 al~~L~~LkGVGPATASaiLa~ 128 (219)
..+.|..+.||||-+|..|...
T Consensus 542 ~~e~l~~i~giG~~~A~si~~f 563 (586)
T 4glx_A 542 SIEELQKVPDVGIVVASHVHNF 563 (586)
T ss_dssp CHHHHTTSTTCCHHHHHHHHHH
T ss_pred CHHHHhcCCCccHHHHHHHHHH
Confidence 4667788888888888877764
No 82
>2fsu_A Protein PHNH; C-P lyase, phosphonate metabolism, structural genomics montreal-kingston bacterial structural genomics initiative; HET: MSE; 1.70A {Escherichia coli} SCOP: c.67.2.1
Probab=22.32 E-value=67 Score=27.13 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=18.8
Q ss_pred CCCChHHHHHHHHhhcCCCCCcc
Q 027775 115 KGVGPATASAVLAAYAPGVAPFM 137 (219)
Q Consensus 115 kGVGPATASaiLa~~~P~~~pFf 137 (219)
-|.+||+++++|++.|++. |++
T Consensus 58 ~~l~~A~~avlLTLlD~eT-plw 79 (210)
T 2fsu_A 58 QPLNIATTSVLLTLADNDT-PVW 79 (210)
T ss_dssp TTSCHHHHHHHHHHCCTTS-CEE
T ss_pred CCCCHHHHHHHHHHhCCCc-cce
Confidence 4679999999999999986 665
No 83
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Probab=22.29 E-value=44 Score=30.01 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=18.0
Q ss_pred HHHHhhc------cCCCChHHHHHHHHh
Q 027775 107 AVSELTV------LKGVGPATASAVLAA 128 (219)
Q Consensus 107 al~~L~~------LkGVGPATASaiLa~ 128 (219)
-+.+|+. ++||||-||--+|.-
T Consensus 224 d~~~L~G~D~~d~IpGIG~KtA~kLl~~ 251 (379)
T 1ul1_X 224 DLCILLGSDYCESIRGIGPKRAVDLIQK 251 (379)
T ss_dssp HHHHHHHCSSSCCCTTCCHHHHHHHHHH
T ss_pred HHHHHhCCCcCCCCCCcCHHHHHHHHHH
Confidence 4556666 999999999998875
No 84
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair, DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A {Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Probab=21.77 E-value=47 Score=30.52 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhhCccH-HHHHHHhhccCCCChHHHHHHHH
Q 027775 85 LDDSSVKSASEKAFKSLPDL-TKAVSELTVLKGVGPATASAVLA 127 (219)
Q Consensus 85 N~~~~V~~~t~~Af~~l~d~-~~al~~L~~LkGVGPATASaiLa 127 (219)
-++..++... +-|..++.+ .+.++.|.+..|||+.+|..|--
T Consensus 323 l~~~iae~Lv-~~FGsLq~Il~AS~eEL~~VeGIGe~rAr~Ire 365 (377)
T 3c1y_A 323 IPLSIGYNVV-RMFKTLDQISKASVEDLKKVEGIGEKRARAISE 365 (377)
T ss_dssp CCHHHHHHHH-HHHCSHHHHTTCCHHHHTTSTTCCHHHHHHHHH
T ss_pred CCHHHHHHHH-HHhCCHHHHHhCCHHHHHhccCccHHHHHHHHH
Confidence 3445555544 446555544 34588899999999999988743
No 85
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=21.30 E-value=29 Score=34.76 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=24.2
Q ss_pred HHHHHhhccCCCChHHHHHHHHhhcCCCCCcccHH
Q 027775 106 KAVSELTVLKGVGPATASAVLAAYAPGVAPFMSDE 140 (219)
Q Consensus 106 ~al~~L~~LkGVGPATASaiLa~~~P~~~pFfsDE 140 (219)
+....|..++||||.+|..|+.--. ..-+|-|-+
T Consensus 505 As~~~L~~v~GiG~~~A~~Iv~yR~-~~G~f~sr~ 538 (785)
T 3bzc_A 505 ASAALLARISGLNSTLAQNIVAHRD-ANGAFRTRD 538 (785)
T ss_dssp CCHHHHHTSTTCCHHHHHHHHHHHH-HHCCCSSGG
T ss_pred CCHHHHhhcCCCCHHHHHHHHHHHH-hcCCCCCHH
Confidence 3467889999999999999998632 223454433
Done!