Query 027779
Match_columns 219
No_of_seqs 194 out of 1264
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 15:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1314 DHHC-type Zn-finger pr 99.9 9.9E-26 2.1E-30 191.2 11.6 202 3-213 10-281 (414)
2 KOG1315 Predicted DHHC-type Zn 99.9 8.7E-26 1.9E-30 192.8 7.8 202 7-216 12-287 (307)
3 KOG1311 DHHC-type Zn-finger pr 99.1 6.1E-10 1.3E-14 96.2 10.8 91 117-215 204-298 (299)
4 KOG1313 DHHC-type Zn-finger pr 98.6 1.7E-07 3.7E-12 78.3 7.4 92 117-210 208-305 (309)
5 PF01529 zf-DHHC: DHHC palmito 98.4 1E-07 2.2E-12 75.6 2.3 37 118-154 137-173 (174)
6 COG5273 Uncharacterized protei 98.0 7.5E-06 1.6E-10 71.1 5.6 90 122-211 200-304 (309)
7 KOG0509 Ankyrin repeat and DHH 96.5 0.013 2.8E-07 54.6 8.0 46 139-185 538-583 (600)
8 PF05814 DUF843: Baculovirus p 55.0 46 0.00099 23.2 5.2 29 131-160 35-63 (83)
9 PF07010 Endomucin: Endomucin; 49.1 47 0.001 27.7 5.2 32 42-73 194-225 (259)
10 KOG1312 DHHC-type Zn-finger pr 47.2 1.9E+02 0.0042 25.1 11.8 34 40-73 96-129 (341)
11 PF06143 Baculo_11_kDa: Baculo 42.7 80 0.0017 22.1 4.9 29 122-150 39-67 (84)
12 PF07297 DPM2: Dolichol phosph 41.4 26 0.00056 24.1 2.3 59 1-62 1-68 (78)
13 PF12380 Peptidase_C62: Gill-a 34.1 17 0.00037 29.2 0.6 27 145-187 14-40 (284)
14 PF13150 DUF3989: Protein of u 26.8 1.3E+02 0.0028 21.0 4.0 30 125-154 36-68 (85)
15 PF14127 DUF4294: Domain of un 23.4 69 0.0015 25.1 2.3 32 143-187 103-134 (157)
16 CHL00031 psbT photosystem II p 22.3 1.6E+02 0.0036 16.7 3.4 27 47-73 5-32 (33)
17 KOG4019 Calcineurin-mediated s 20.5 59 0.0013 26.2 1.4 19 63-81 109-127 (193)
No 1
>KOG1314 consensus DHHC-type Zn-finger protein [General function prediction only]
Probab=99.93 E-value=9.9e-26 Score=191.18 Aligned_cols=202 Identities=26% Similarity=0.278 Sum_probs=145.6
Q ss_pred CCccceehhhhhhhhhhhhheeeehheeccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCC
Q 027779 3 KGFTFSLPVSVVVLAIFYIYFTTVFIFIDRWFGLMSSPGLMNAIVFTAVALMCVFSYTVAILRDPGRVPADYMPDVEDDQ 82 (219)
Q Consensus 3 ~~~~~~lpv~~v~~li~~~y~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~l~~~sy~~~~~t~PG~vP~~~~~~~~~~~ 82 (219)
+|++||.|+ +.++++..+-.+..+....+|....+..++.+.++|.+...|+++||+.|++++||+||.+|+|....|+
T Consensus 10 rr~~hwGpi-~alsiit~i~~~~~~~n~lww~p~ss~~g~~n~i~f~~~~~m~~~ny~~A~~~gPG~vp~~wkPe~~~D~ 88 (414)
T KOG1314|consen 10 RRFLHWGPI-TALSIITIITSTTGYMNSLWWFPLSSFLGVPNQITFLLWTSMILYNYFNAIFTGPGFVPLGWKPENPKDE 88 (414)
T ss_pred hheeccccH-HHHHHHHHHHHHHHHhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhH
Confidence 478999998 6888888776666666555566666789999999999999999999999999999999999999877553
Q ss_pred C-------------c--cccccce----------------------------------------EEEecccccccccccc
Q 027779 83 N-------------P--MHEIKRK----------------------------------------VLLVGSLTNDSLEDEL 107 (219)
Q Consensus 83 ~-------------~--~~~~k~~----------------------------------------~l~~~~~~~~~~~~~~ 107 (219)
. | .|-+||+ ..+++.+|......|+
T Consensus 89 ~~lqfCk~CqgYKapRSHHCrkCnrCvmkMDHHCPWinnCVG~aNh~~F~~FLlf~ivG~ih~tiI~~~~~~~~Iy~~W~ 168 (414)
T KOG1314|consen 89 MFLQFCKKCQGYKAPRSHHCRKCNRCVMKMDHHCPWINNCVGWANHAYFLRFLLFSIVGCIHGTIILVCAQYRGIYFRWY 168 (414)
T ss_pred HHHHHHhhccCcCCCccccchHHHHHHHhhccCCcchhhcccccccHHHHHHHHHHHHhcccceeeehhHHHHHHHHHHH
Confidence 1 1 2334444 1222233332222232
Q ss_pred c--c----C----CchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHHHHHH----hCCCcccCCC
Q 027779 108 Q--T----G----GSFRTAY-VISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAE----KGGTVYKHPY 172 (219)
Q Consensus 108 ~--~----~----~~~~~~~-~~~~~l~~~~~l~l~~l~~~h~~li~~N~TTiE~~~~~~~~~~~~----~~~~~~~~~y 172 (219)
. + + +..++.. ++...+++.+.+++++|++.|+..|++|+|.||.+..+++..+++ ++..++..||
T Consensus 169 ~~~g~~hlp~v~ft~~~li~~vfslgla~gv~la~t~Lf~~qlk~Il~nrt~IE~wi~~Ka~~rr~~~~~d~~~~f~ypy 248 (414)
T KOG1314|consen 169 IKYGLRHLPIVFFTLSSLIALVFSLGLAIGVVLALTMLFFIQLKQILNNRTGIESWIVEKAMDRREYYFNDDEGEFTYPY 248 (414)
T ss_pred hhcccccCceeeccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhhccCCCCceeeec
Confidence 1 1 1 1123333 223346677889999999999999999999999998666533331 1224678899
Q ss_pred ChhHHHHHHHhhCCCcceeeecCCCCCCCCeEeecCCCCCC
Q 027779 173 DLGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRTAYHNAV 213 (219)
Q Consensus 173 d~G~~~N~~~v~G~~~~~WllP~~~~~gdG~~~~~~~~~~~ 213 (219)
|+||+.|+++||-.+. .+.|||+.||+.++.+|
T Consensus 249 dlgWr~n~r~vf~~~~--------~~~gdg~~wPv~~gc~q 281 (414)
T KOG1314|consen 249 DLGWRINLREVFFQNK--------KEEGDGIEWPVVEGCVQ 281 (414)
T ss_pred cccccccHHHHhhhcc--------ccCCCCccccccCcccc
Confidence 9999999999995433 57999999999998765
No 2
>KOG1315 consensus Predicted DHHC-type Zn-finger protein [General function prediction only]
Probab=99.92 E-value=8.7e-26 Score=192.75 Aligned_cols=202 Identities=28% Similarity=0.414 Sum_probs=147.8
Q ss_pred ceehhhhhhhhhhhhheeeehheeccccccCChhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCc--
Q 027779 7 FSLPVSVVVLAIFYIYFTTVFIFIDRWFGLMSSPGLMNAIVFTAVALMCVFSYTVAILRDPGRVPADYMPDVEDDQNP-- 84 (219)
Q Consensus 7 ~~lpv~~v~~li~~~y~~~~~~~~~~~~~~~~~~~~~~~i~f~~l~~l~~~sy~~~~~t~PG~vP~~~~~~~~~~~~~-- 84 (219)
+|+|++++.++++|.||++++.+|.++... ...+.+.++.|+++++|+.|||++++++|||.+|..|.++.++.+..
T Consensus 12 r~~~~~~i~~~~~~~yy~~v~~~c~~~i~~-~~~~~~~ll~~~~ll~m~~~sy~~~vf~~pg~vp~~~~~~~~~~~~~~~ 90 (307)
T KOG1315|consen 12 RWIPVLIILLVIGWTYYVYVAVLCILSISL-TIPSVLLLLLFHLLLIMFLWSYFRTVFTDPGRVPDSYRPSVEDEDSLEN 90 (307)
T ss_pred cchhheeeeeeEEEEEEEeehhhhHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHheeEecCCCCccccCCCcCccccccc
Confidence 499999999999999999999999887654 36778899999999999999999999999999999998877643210
Q ss_pred ---------c-------c-c--ccce-----------------------EEEeccc-----ccccc--------------
Q 027779 85 ---------M-------H-E--IKRK-----------------------VLLVGSL-----TNDSL-------------- 103 (219)
Q Consensus 85 ---------~-------~-~--~k~~-----------------------~l~~~~~-----~~~~~-------------- 103 (219)
. . + .||+ |.++..+ |++|.
T Consensus 91 ~~~~~~~~~~~~~~~~g~~R~C~kC~~iKPdRaHHCsvC~rCvLKmDHHCpWi~nCVgf~NyKfF~lfl~y~~l~~~~~l 170 (307)
T KOG1315|consen 91 GSDNERDLPGYTRTSDGAVRYCDKCKCIKPDRAHHCSVCNRCVLKMDHHCPWINNCVGFRNYKFFLLFLFYTNLYSIYVL 170 (307)
T ss_pred cCcccccceeeEecCCCCceeecccccccCCccccchhhhhhhhccccCCcceeceecccchHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 0111 3333221 12111
Q ss_pred --------ccccc--cCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHHHHHHhCCCcccCCC
Q 027779 104 --------EDELQ--TGGS-FRTAYVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPY 172 (219)
Q Consensus 104 --------~~~~~--~~~~-~~~~~~~~~~l~~~~~l~l~~l~~~h~~li~~N~TTiE~~~~~~~~~~~~~~~~~~~~~y 172 (219)
..+.. +++. ....++++.++++.++++++.|+++|+++|++|+||+|.++.... ..|....+.+
T Consensus 171 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~i~l~~~l~~h~~Li~~N~TTiE~~~~~~~-----~~~~~~~~~~ 245 (307)
T KOG1315|consen 171 VTTLIGFTKYFQGGAGPSSLLLFFIVFLFLVAIAFSISLSGLLCFHTYLILKNKTTIEAYKSPVF-----RSGLHNKNGF 245 (307)
T ss_pred HHHHHHHHHHHhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhhccccc-----cccccccCCc
Confidence 01101 1122 234456666777889999999999999999999999999876321 1233345666
Q ss_pred ChhHHHHHHHhhCCCcceeeecCCCCCCCCeEeecCCCCCCCCC
Q 027779 173 DLGIFENLTSVLGPNIFSWVCPSSRHIGSGLNFRTAYHNAVGAS 216 (219)
Q Consensus 173 d~G~~~N~~~v~G~~~~~WllP~~~~~gdG~~~~~~~~~~~~~~ 216 (219)
++ ..|++|+||.++..|++|.....+||.+++.+....++.+
T Consensus 246 ~~--~~n~~~vfg~~~~~wl~P~~~s~~~~~~~~~~~~~~~~~~ 287 (307)
T KOG1315|consen 246 NL--YVNFREVFGSNLLYWLLPIDSSWGDGVSFPLRGDGLDFRT 287 (307)
T ss_pred ce--eecHHHHhCCCceEEeccccCccccCccccccccCCcccc
Confidence 66 8899999999999999999988888888887777555543
No 3
>KOG1311 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=99.11 E-value=6.1e-10 Score=96.16 Aligned_cols=91 Identities=32% Similarity=0.416 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHHHHHHhCCCcccCCCChhHHHHHHHhhCCC-cceeeecC
Q 027779 117 YVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPN-IFSWVCPS 195 (219)
Q Consensus 117 ~~~~~~l~~~~~l~l~~l~~~h~~li~~N~TTiE~~~~~~~~~~~~~~~~~~~~~yd~G~~~N~~~v~G~~-~~~WllP~ 195 (219)
.+++.++++.+...++.|+.+|++++.+|+||+|+.+.. ++....++||.|.++|++++||.+ ...|+.|.
T Consensus 204 ~~~l~~~~~~~~~~~~~l~~fh~~li~~~~Tt~e~~~~~--------~~~~~~~~~~~g~~~n~~~~~~~~~~~~~~~p~ 275 (299)
T KOG1311|consen 204 SALLGLLSALFLAFTSALLCFHIYLIKSGSTTYESIKSL--------DFVSRSNPYDLGLLKNLQEVFGGPLPLSWLSPF 275 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeeEecCcchhhhhhcc--------ccccccCCCchhHHHHHHHHhCCCCCccccccc
Confidence 344455667777778899999999999999999988641 111114899999999999999985 78999998
Q ss_pred C---CCCCCCeEeecCCCCCCCC
Q 027779 196 S---RHIGSGLNFRTAYHNAVGA 215 (219)
Q Consensus 196 ~---~~~gdG~~~~~~~~~~~~~ 215 (219)
. ..+.||-.++.....+.+.
T Consensus 276 ~~~~~~p~~~~~~~~~~~~~~~~ 298 (299)
T KOG1311|consen 276 ARSGPLPHDGEGGPPTPHVSIFA 298 (299)
T ss_pred ccCCCCCCCCCCCCccccccccC
Confidence 7 3678888887766665543
No 4
>KOG1313 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=98.58 E-value=1.7e-07 Score=78.27 Aligned_cols=92 Identities=22% Similarity=0.259 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHHHHHHhCCCcccCCCChhHHHHHHHhhCC--Cccee---
Q 027779 117 YVISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGP--NIFSW--- 191 (219)
Q Consensus 117 ~~~~~~l~~~~~l~l~~l~~~h~~li~~N~TTiE~~~~~~~~~~~~~~~~~~~~~yd~G~~~N~~~v~G~--~~~~W--- 191 (219)
...+.++++.+.++++.+..||.++|..++|++|+....+.++....+ ...|||+.|..+||+.++|- .+-.|
T Consensus 208 ~~~~~fls~~~lv~vg~l~~W~~vlI~~G~tsi~~~~~~~e~k~~~a~--~R~~~~n~g~k~nWr~fLg~~~~r~~wk~v 285 (309)
T KOG1313|consen 208 IANLWFLSVRVLVAVGLLTAWHAVLISRGETSIEQLINIKERKRYLAH--LRSNPTNFGGKANWRNFLGLFRGRHFWKTV 285 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhheeeehhhhhHHHHHHHHHhHhHHHh--ccCCCcccchHHHHHHhhccccCCceeEEE
Confidence 344667888888999999999999999999999998765543322111 22799999999999999985 24345
Q ss_pred eecCC-CCCCCCeEeecCCC
Q 027779 192 VCPSS-RHIGSGLNFRTAYH 210 (219)
Q Consensus 192 llP~~-~~~gdG~~~~~~~~ 210 (219)
++|.. +|.+.|..+++++.
T Consensus 286 ~lPt~~~p~~~~~~~~~~da 305 (309)
T KOG1313|consen 286 LLPTIRKPVKYGDSKEKSDA 305 (309)
T ss_pred eccccccccccCCcccccch
Confidence 89987 88899999986543
No 5
>PF01529 zf-DHHC: DHHC palmitoyltransferase; InterPro: IPR001594 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the DHHC-type zinc finger domain, which is also known as NEW1 []. The DHHC Zn-finger was first isolated in the Drosophila putative transcription factor DNZ1 and was named after a conserved sequence motif []. This domain has palmitoyltransferase activity; this post-translational modification attaches the C16 saturated fatty acid palmitate via a thioester linkage, predominantly to cysteine residues []. This domain is found in the DHHC proteins which are palmitoyl transferases []; the DHHC motif is found within a cysteine-rich domain which is thought to contain the catalytic site. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding
Probab=98.43 E-value=1e-07 Score=75.59 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhh
Q 027779 118 VISGLLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEG 154 (219)
Q Consensus 118 ~~~~~l~~~~~l~l~~l~~~h~~li~~N~TTiE~~~~ 154 (219)
+++.++++++++.++.+++.|++++++|+||+|.+++
T Consensus 137 ~~~~~~~~~~~~~~~~l~~~~~~~i~~n~Tt~E~~~~ 173 (174)
T PF01529_consen 137 IFLLIISIFFFIFVGFLLIFQLYLILRNITTYERIKR 173 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHc
Confidence 4455566888888999999999999999999999865
No 6
>COG5273 Uncharacterized protein containing DHHC-type Zn finger [General function prediction only]
Probab=98.04 E-value=7.5e-06 Score=71.09 Aligned_cols=90 Identities=31% Similarity=0.430 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHHHHHH------h---------CCCcccCCCChhHHHHHHHhhCC
Q 027779 122 LLLVPLSVALSVLLGWHIYLIFHNKTTIEYHEGVRALWLAE------K---------GGTVYKHPYDLGIFENLTSVLGP 186 (219)
Q Consensus 122 ~l~~~~~l~l~~l~~~h~~li~~N~TTiE~~~~~~~~~~~~------~---------~~~~~~~~yd~G~~~N~~~v~G~ 186 (219)
.+++.+++.+..++.+|.+++..|+||+|..+..+.....+ . +..+...|++.|.-+|+..++|.
T Consensus 200 ~~~~~~f~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~i~~~ 279 (309)
T COG5273 200 LLGVVFFIITTLLLLFLIYLILNNLTTIEFIQISRGGSTLEFFPLCRESNLPFTNIFDSSEGALPLDLGIGQNLSTIKGS 279 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccceecccccchhccCCcCceeccCCCccccccccCccccceeecCC
Confidence 44566778889999999999999999999987655432210 0 11224568899999999999999
Q ss_pred CcceeeecCCCCCCCCeEeecCCCC
Q 027779 187 NIFSWVCPSSRHIGSGLNFRTAYHN 211 (219)
Q Consensus 187 ~~~~WllP~~~~~gdG~~~~~~~~~ 211 (219)
+...|..|......+|..++.+.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (309)
T COG5273 280 NALYWLTPLHTNYCNSYDFSLRSDT 304 (309)
T ss_pred CceeeccccccCCCCccCcccchhh
Confidence 9999999966444777777776554
No 7
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=96.45 E-value=0.013 Score=54.62 Aligned_cols=46 Identities=24% Similarity=0.150 Sum_probs=35.4
Q ss_pred HHHHhccccchhhhhhhhHHHHHHhCCCcccCCCChhHHHHHHHhhC
Q 027779 139 IYLIFHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLG 185 (219)
Q Consensus 139 ~~li~~N~TTiE~~~~~~~~~~~~~~~~~~~~~yd~G~~~N~~~v~G 185 (219)
...++.+.||+|.+...|.+...-+.+ +..+|++.|+.+|+.+++=
T Consensus 538 ~~~~c~~~tt~e~~n~~r~~~~~~~~~-~~~~~~s~g~~~Nl~df~~ 583 (600)
T KOG0509|consen 538 YNCACLHLTTNEQINVKRYEHLGIKRG-PTRSPFSPGPIRNLVDFFL 583 (600)
T ss_pred cceeeecccHHHHHHHHHhhccccccC-cCCCCCCchhhhcchheee
Confidence 335788999999998877655543333 4678999999999999884
No 8
>PF05814 DUF843: Baculovirus protein of unknown function (DUF843); InterPro: IPR008561 This family consists of several unidentified baculovirus proteins of around 85 residues long with no known function.
Probab=54.97 E-value=46 Score=23.16 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhccccchhhhhhhhHHHH
Q 027779 131 LSVLLGWHIYLIFHNKTTIEYHEGVRALWL 160 (219)
Q Consensus 131 l~~l~~~h~~li~~N~TTiE~~~~~~~~~~ 160 (219)
+..+++.|+|.+ +.+++.+.+..++.+..
T Consensus 35 viF~~~L~~yy~-kteS~~~dL~t~k~K~~ 63 (83)
T PF05814_consen 35 VIFFCVLQVYYI-KTESTPQDLQTEKAKSI 63 (83)
T ss_pred HHHHHHHHHHHc-CCCCcHHHHhhhhhhhH
Confidence 344556788877 88888887766554333
No 9
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=49.12 E-value=47 Score=27.71 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 027779 42 LMNAIVFTAVALMCVFSYTVAILRDPGRVPAD 73 (219)
Q Consensus 42 ~~~~i~f~~l~~l~~~sy~~~~~t~PG~vP~~ 73 (219)
.+-++...++.+.++.-|..|..+|||.+-++
T Consensus 194 vIaliVitl~vf~LvgLyr~C~k~dPg~p~~g 225 (259)
T PF07010_consen 194 VIALIVITLSVFTLVGLYRMCWKTDPGTPENG 225 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcccC
Confidence 44556666777777788888899999966444
No 10
>KOG1312 consensus DHHC-type Zn-finger proteins [General function prediction only]
Probab=47.24 E-value=1.9e+02 Score=25.13 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 027779 40 PGLMNAIVFTAVALMCVFSYTVAILRDPGRVPAD 73 (219)
Q Consensus 40 ~~~~~~i~f~~l~~l~~~sy~~~~~t~PG~vP~~ 73 (219)
.+..+.+.-..+++.=..++.-++.+|||.+.++
T Consensus 96 lsl~~~il~~l~vivp~i~f~ltc~snpg~i~k~ 129 (341)
T KOG1312|consen 96 LSLHYLILPYLLVIVPLIFFTLTCGSNPGIITKA 129 (341)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhhcCCCCccchh
Confidence 4455666666677778888999999999998763
No 11
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=42.70 E-value=80 Score=22.06 Aligned_cols=29 Identities=21% Similarity=0.172 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchh
Q 027779 122 LLLVPLSVALSVLLGWHIYLIFHNKTTIE 150 (219)
Q Consensus 122 ~l~~~~~l~l~~l~~~h~~li~~N~TTiE 150 (219)
++|+.+.+.+.++|+.=++.|.+|.-..|
T Consensus 39 Vic~~lVfVii~lFi~ll~~i~~~~e~~~ 67 (84)
T PF06143_consen 39 VICCFLVFVIIVLFILLLYNINKNAEQDR 67 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 34433333333444444455555544333
No 12
>PF07297 DPM2: Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2); InterPro: IPR009914 This family consists of several eukaryotic dolichol phosphate-mannose biosynthesis regulatory (DPM2) proteins. Biosynthesis of glycosylphosphatidylinositol and N-glycan precursor is dependent upon a mannosyl donor, dolichol phosphate-mannose (DPM). DPM2, an 84 amino acid membrane protein expressed in the endoplasmic reticulum (ER), makes a complex with DPM1 that is essential for the ER localisation and stable expression of DPM1. Moreover, DPM2 enhances binding of dolichol phosphate, a substrate of DPM synthase. Biosynthesis of DPM in mammalian cells is regulated by DPM2 [].; GO: 0009059 macromolecule biosynthetic process, 0030176 integral to endoplasmic reticulum membrane
Probab=41.45 E-value=26 Score=24.14 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=31.6
Q ss_pred CCCCccceehhhhhhhhhhhhheeeehheeccccccC---------ChhHHHHHHHHHHHHHHHHHHHHHh
Q 027779 1 MTKGFTFSLPVSVVVLAIFYIYFTTVFIFIDRWFGLM---------SSPGLMNAIVFTAVALMCVFSYTVA 62 (219)
Q Consensus 1 ~~~~~~~~lpv~~v~~li~~~y~~~~~~~~~~~~~~~---------~~~~~~~~i~f~~l~~l~~~sy~~~ 62 (219)
|.||.++...+ ++++..+.||+....+. |..+.+ ...++..-++...+.+..+.+|.-.
T Consensus 1 ~~Dr~vG~~~l--~~a~~vF~YYt~Wvlll-PFvd~d~~i~~~F~Pr~yAi~lP~~lll~~~~~vg~f~g~ 68 (78)
T PF07297_consen 1 MSDRLVGLLML--AVALSVFTYYTIWVLLL-PFVDEDHPIHSFFPPREYAIILPIFLLLLGLSGVGTFLGY 68 (78)
T ss_pred ChHHHHHHHHH--HHHHHHHHHHHHHHHHh-cccCCCchHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666665544 66777888888644433 333221 1233444455555555555555443
No 13
>PF12380 Peptidase_C62: Gill-associated viral 3C-like peptidase; InterPro: IPR024348 This protease is found in polyproteins from the positive-stranded RNA virus of prawns called yellow head virus or gill-associated virus (GAV). The GAV cysteine proteinase (3C-like proteinase) is predicted to be the key enzyme in the processing of the GAV replicase polyprotein precursors, polyprotein 1a and polyprotein 1ab. This protease employs a Cys(2968)-His(2879) catalytic dyad []. It is classified as family C62 in the MEROPS database.
Probab=34.13 E-value=17 Score=29.20 Aligned_cols=27 Identities=37% Similarity=0.581 Sum_probs=21.5
Q ss_pred cccchhhhhhhhHHHHHHhCCCcccCCCChhHHHHHHHhhCCC
Q 027779 145 NKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPN 187 (219)
Q Consensus 145 N~TTiE~~~~~~~~~~~~~~~~~~~~~yd~G~~~N~~~v~G~~ 187 (219)
|.|+.|.++ ++||++ .++|+..|.|++
T Consensus 14 n~t~vedln---------------khpynk-yr~nivrvyger 40 (284)
T PF12380_consen 14 NNTRVEDLN---------------KHPYNK-YRSNIVRVYGER 40 (284)
T ss_pred Cccchhhhc---------------cCchhh-hhhhheEeeccc
Confidence 778888773 478886 889999999985
No 14
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=26.77 E-value=1.3e+02 Score=20.96 Aligned_cols=30 Identities=20% Similarity=0.029 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccc---cchhhhhh
Q 027779 125 VPLSVALSVLLGWHIYLIFHNK---TTIEYHEG 154 (219)
Q Consensus 125 ~~~~l~l~~l~~~h~~li~~N~---TTiE~~~~ 154 (219)
+++++....+++.-++-+.++. =.||+++.
T Consensus 36 ~~fa~l~ly~~~~ai~~~Gk~~g~~~~IeHI~~ 68 (85)
T PF13150_consen 36 VLFAALCLYMTVSAIYDIGKEDGERMEIEHIRP 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCccceeccc
Confidence 3344444455566667777666 34565543
No 15
>PF14127 DUF4294: Domain of unknown function (DUF4294)
Probab=23.37 E-value=69 Score=25.10 Aligned_cols=32 Identities=9% Similarity=0.127 Sum_probs=25.5
Q ss_pred hccccchhhhhhhhHHHHHHhCCCcccCCCChhHHHHHHHhhCCC
Q 027779 143 FHNKTTIEYHEGVRALWLAEKGGTVYKHPYDLGIFENLTSVLGPN 187 (219)
Q Consensus 143 ~~N~TTiE~~~~~~~~~~~~~~~~~~~~~yd~G~~~N~~~v~G~~ 187 (219)
-+|+|+.|-++. ..+++.-|+++.+..+||.+
T Consensus 103 etg~TsyelIK~-------------~rgg~~A~~~q~~A~~Fg~s 134 (157)
T PF14127_consen 103 ETGSTSYELIKE-------------LRGGWRAFWYQTFAWLFGIS 134 (157)
T ss_pred hcCCcHHHHHHH-------------hhCChhHHHHHHHHHHhCcc
Confidence 459999998754 34667789999999999974
No 16
>CHL00031 psbT photosystem II protein T
Probab=22.35 E-value=1.6e+02 Score=16.67 Aligned_cols=27 Identities=22% Similarity=0.539 Sum_probs=15.2
Q ss_pred HHHHHHHHHH-HHHHHhhhcCCCCCCCC
Q 027779 47 VFTAVALMCV-FSYTVAILRDPGRVPAD 73 (219)
Q Consensus 47 ~f~~l~~l~~-~sy~~~~~t~PG~vP~~ 73 (219)
.|.+++++.+ .-|+...+.||..++++
T Consensus 5 vYtfll~~tlgilFFAI~FRePPri~kk 32 (33)
T CHL00031 5 VYTFLLVSTLGIIFFAIFFREPPKVPTK 32 (33)
T ss_pred HHHHHHHHHHHHHHHhheecCCCCCCCC
Confidence 3444444433 33444567899888754
No 17
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=20.51 E-value=59 Score=26.17 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=15.6
Q ss_pred hhcCCCCCCCCCCCCCCCC
Q 027779 63 ILRDPGRVPADYMPDVEDD 81 (219)
Q Consensus 63 ~~t~PG~vP~~~~~~~~~~ 81 (219)
..++|+.+|.+|+++.|..
T Consensus 109 LISPPaSPPvgWe~~eda~ 127 (193)
T KOG4019|consen 109 LISPPASPPVGWEPIEDAP 127 (193)
T ss_pred eecCCCCCCCCCcccccCC
Confidence 4678999999999987754
Done!